BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040719
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V2Y|A Chain A, Solution Structure Of Mouse Hypothetical Gene (Riken Cdna
3300001g02) Product Homologous To Ubiquitin Fold
Length = 105
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQG--KISWTNVWGHFCLCYDGRK 105
V K+DG V + +NATV +L++AI+ L G ISW+ VW + L G K
Sbjct: 12 VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEK 71
Query: 106 LVNDKTHIRDFRMKDGDELQFSRHMS 131
L D+ +RD+ +++ DE+ F + +
Sbjct: 72 LTEDRKKLRDYGIRNRDEVSFIKKLG 97
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 75 EVFTLSPTEGQGKISWTNVWGHFCL-CYDGRKLVNDKTHIRDFRM 118
+V L P +GK+S NVW +C+ C+D L+ + + F++
Sbjct: 31 QVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQL 75
>pdb|1E5N|A Chain A, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
In Complex With Xylopentaose
pdb|1E5N|B Chain B, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
In Complex With Xylopentaose
Length = 348
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 27 EGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERN-ATVGELRQAIEEVFTLSPT 82
E N +T + L Q R+ + + +DG F +++ + ++ +RQA++++ LSPT
Sbjct: 185 EENGAKTTALVNLVQ-RLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT 240
>pdb|1XYS|A Chain A, Catalytic Core Of Xylanase A E246c Mutant
pdb|1XYS|B Chain B, Catalytic Core Of Xylanase A E246c Mutant
Length = 347
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 27 EGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERN-ATVGELRQAIEEVFTLSPT 82
E N +T + L Q R+ + + +DG F +++ + ++ +RQA++++ LSPT
Sbjct: 184 EENGAKTTALVNLVQ-RLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT 239
>pdb|1W2P|A Chain A, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
Cellvibrio Japonicus
pdb|1W2P|B Chain B, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
Cellvibrio Japonicus
Length = 348
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 27 EGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERN-ATVGELRQAIEEVFTLSPT 82
E N +T + L Q R+ + + +DG F +++ + ++ +RQA++++ LSPT
Sbjct: 185 EENGAKTTALVNLVQ-RLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT 240
>pdb|1CLX|A Chain A, Catalytic Core Of Xylanase A
pdb|1CLX|B Chain B, Catalytic Core Of Xylanase A
pdb|1CLX|C Chain C, Catalytic Core Of Xylanase A
pdb|1CLX|D Chain D, Catalytic Core Of Xylanase A
Length = 347
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 27 EGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERN-ATVGELRQAIEEVFTLSPT 82
E N +T + L Q R+ + + +DG F +++ + ++ +RQA++++ LSPT
Sbjct: 184 EENGAKTTALVNLVQ-RLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT 239
>pdb|1W32|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W32|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 348
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 27 EGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERN-ATVGELRQAIEEVFTLSPT 82
E N +T + L Q R+ + + +DG F +++ + ++ +RQA++++ LSPT
Sbjct: 185 EENGAKTTALVNLVQ-RLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT 240
>pdb|1W3H|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W3H|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 359
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 27 EGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERN-ATVGELRQAIEEVFTLSPT 82
E N +T + L Q R+ + + +DG F +++ + ++ +RQA++++ LSPT
Sbjct: 196 EENGAKTTALVNLVQ-RLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT 251
>pdb|1W2V|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W2V|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 348
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 27 EGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERN-ATVGELRQAIEEVFTLSPT 82
E N +T + L Q R+ + + +DG F +++ + ++ +RQA++++ LSPT
Sbjct: 185 EENGAKTTALVNLVQ-RLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT 240
>pdb|3TFH|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFH|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFI|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFI|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFJ|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
pdb|3TFJ|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
Length = 369
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 14 LTLD-DVDDVGDCYEGNSVRTMPYLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQA 72
++LD D++ +G P KL +I + + L GS+ ++Y E N +GELR A
Sbjct: 266 VSLDSDINFLGKEKLKEIKLKGPQKKLRGVKIDIKEISLTGSK-NIYDENNNVIGELRSA 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,328,513
Number of Sequences: 62578
Number of extensions: 251713
Number of successful extensions: 485
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 11
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)