BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040719
         (205 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8VIK1|SNR25_MOUSE U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus
           musculus GN=Snrnp25 PE=1 SV=1
          Length = 123

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 46  LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
           + V K+DG    V + +NATV +L++AI+    L      G   ISW+ VW  + L   G
Sbjct: 34  VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAG 93

Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
            KL  D+  +RD+ +++ DE+ F + +
Sbjct: 94  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120


>sp|Q3ZBQ4|SNR25_BOVIN U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos
           taurus GN=SNRNP25 PE=2 SV=2
          Length = 123

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 46  LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDG 103
           + V K+DG    V + +NATV +L++AI+    L      G   ISW+ VW  + L   G
Sbjct: 34  VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYHLTSAG 93

Query: 104 RKLVNDKTHIRDFRMKDGDELQFSRHM 130
            KL  D+  +RD+ +++ DE+ F + +
Sbjct: 94  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120


>sp|Q9BV90|SNR25_HUMAN U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo
           sapiens GN=SNRNP25 PE=1 SV=1
          Length = 132

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 48  VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE--GQGKISWTNVWGHFCLCYDGRK 105
           V K+DG    V + ++ATV +L++AI+    L      G   ISW+ VW  + L   G K
Sbjct: 45  VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEK 104

Query: 106 LVNDKTHIRDFRMKDGDELQFSRHM 130
           L  D+  +RD+ +++ DE+ F + +
Sbjct: 105 LTEDRKKLRDYGIRNRDEVSFIKKL 129


>sp|C6DJR2|RHAA_PECCP L-rhamnose isomerase OS=Pectobacterium carotovorum subsp.
           carotovorum (strain PC1) GN=rhaA PE=3 SV=1
          Length = 420

 Score = 30.8 bits (68), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 60  IERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYD 102
           +E   T+ +L Q  +    L+  E Q  + W  VW H+C C+D
Sbjct: 354 LEPTETLRKLEQNGDYTARLALLEEQKSLPWQAVWEHYCQCHD 396


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,544,312
Number of Sequences: 539616
Number of extensions: 3241023
Number of successful extensions: 7661
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7652
Number of HSP's gapped (non-prelim): 8
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)