Query 040719
Match_columns 205
No_of_seqs 113 out of 202
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 11:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01804 midnolin_N Ubiquitin-l 99.6 2.7E-14 5.9E-19 104.2 9.1 76 43-133 1-76 (78)
2 cd01791 Ubl5 UBL5 ubiquitin-li 99.5 3.9E-14 8.6E-19 103.3 8.2 71 43-127 1-71 (73)
3 cd01806 Nedd8 Nebb8-like ubiq 99.4 7.2E-13 1.6E-17 93.3 9.3 75 44-132 1-75 (76)
4 cd01792 ISG15_repeat1 ISG15 ub 99.4 4E-13 8.6E-18 98.0 8.1 72 44-129 3-76 (80)
5 cd01807 GDX_N ubiquitin-like d 99.4 6E-13 1.3E-17 95.3 8.7 72 44-129 1-72 (74)
6 cd01803 Ubiquitin Ubiquitin. U 99.4 9.6E-13 2.1E-17 92.6 8.7 75 44-132 1-75 (76)
7 cd01805 RAD23_N Ubiquitin-like 99.4 1.1E-12 2.5E-17 93.3 9.1 73 44-130 1-75 (77)
8 cd01809 Scythe_N Ubiquitin-lik 99.4 1.5E-12 3.2E-17 90.8 8.7 72 44-129 1-72 (72)
9 cd01808 hPLIC_N Ubiquitin-like 99.4 2.3E-12 5E-17 91.6 8.2 71 44-129 1-71 (71)
10 cd01797 NIRF_N amino-terminal 99.4 2.4E-12 5.3E-17 94.5 8.3 75 44-132 1-77 (78)
11 cd01810 ISG15_repeat2 ISG15 ub 99.4 2.8E-12 6E-17 92.0 8.2 73 46-132 1-73 (74)
12 PTZ00044 ubiquitin; Provisiona 99.3 7.4E-12 1.6E-16 89.1 8.9 75 44-132 1-75 (76)
13 cd01802 AN1_N ubiquitin-like d 99.3 8.9E-12 1.9E-16 96.3 9.9 78 41-132 25-102 (103)
14 cd01790 Herp_N Homocysteine-re 99.3 4.3E-12 9.3E-17 95.0 7.6 72 43-127 1-77 (79)
15 PF00240 ubiquitin: Ubiquitin 99.3 8.8E-12 1.9E-16 86.8 8.3 68 49-130 1-68 (69)
16 cd01793 Fubi Fubi ubiquitin-li 99.3 1.2E-11 2.5E-16 88.7 8.6 73 44-132 1-73 (74)
17 cd01798 parkin_N amino-termina 99.3 8.8E-12 1.9E-16 88.2 7.7 70 46-129 1-70 (70)
18 cd01794 DC_UbP_C dendritic cel 99.3 1.4E-11 3E-16 88.9 7.5 70 46-129 1-70 (70)
19 cd01812 BAG1_N Ubiquitin-like 99.3 1.8E-11 3.9E-16 85.5 7.8 69 44-127 1-69 (71)
20 cd01813 UBP_N UBP ubiquitin pr 99.3 1.8E-11 3.8E-16 89.2 7.0 69 44-127 1-72 (74)
21 cd01796 DDI1_N DNA damage indu 99.2 3.6E-11 7.9E-16 86.2 7.4 68 46-126 1-69 (71)
22 KOG0010 Ubiquitin-like protein 99.2 4.2E-11 9E-16 114.1 7.3 80 42-136 14-93 (493)
23 smart00213 UBQ Ubiquitin homol 99.1 1.9E-10 4.2E-15 77.5 7.1 64 44-122 1-64 (64)
24 cd01800 SF3a120_C Ubiquitin-li 99.1 2.5E-10 5.4E-15 82.5 7.5 69 50-132 4-72 (76)
25 TIGR00601 rad23 UV excision re 99.1 2.9E-10 6.3E-15 105.4 8.7 72 44-129 1-75 (378)
26 cd01763 Sumo Small ubiquitin-r 99.0 2.6E-09 5.7E-14 79.4 10.0 78 41-132 9-86 (87)
27 cd01769 UBL Ubiquitin-like dom 99.0 1.3E-09 2.8E-14 74.2 7.5 67 48-128 2-68 (69)
28 PF11976 Rad60-SLD: Ubiquitin- 98.9 5.2E-09 1.1E-13 73.7 8.1 71 44-127 1-71 (72)
29 cd01815 BMSC_UbP_N Ubiquitin-l 98.9 3.5E-09 7.6E-14 78.9 5.2 55 61-129 18-75 (75)
30 cd01799 Hoil1_N Ubiquitin-like 98.8 1.2E-08 2.5E-13 74.8 6.5 63 51-127 10-73 (75)
31 cd01801 Tsc13_N Ubiquitin-like 98.8 1.3E-08 2.7E-13 73.9 6.5 71 45-128 2-76 (77)
32 PLN02560 enoyl-CoA reductase 98.7 3.2E-08 6.9E-13 89.6 7.9 72 44-128 1-82 (308)
33 cd01795 USP48_C USP ubiquitin- 98.7 6.9E-08 1.5E-12 76.3 7.1 65 55-132 16-80 (107)
34 KOG0011 Nucleotide excision re 98.6 6.6E-08 1.4E-12 89.0 6.9 75 44-131 1-76 (340)
35 cd01789 Alp11_N Ubiquitin-like 98.5 7.1E-07 1.5E-11 66.3 8.6 73 44-129 2-81 (84)
36 PF14560 Ubiquitin_2: Ubiquiti 98.4 2.1E-06 4.6E-11 63.4 8.5 75 44-129 2-83 (87)
37 KOG0004 Ubiquitin/40S ribosoma 98.4 3.4E-07 7.3E-12 76.7 4.4 82 44-139 1-82 (156)
38 PF11543 UN_NPL4: Nuclear pore 98.3 9.3E-07 2E-11 65.9 5.4 73 42-128 3-79 (80)
39 cd01814 NTGP5 Ubiquitin-like N 98.3 1.1E-06 2.5E-11 70.2 6.3 88 42-136 3-97 (113)
40 PF13881 Rad60-SLD_2: Ubiquiti 98.2 1.9E-05 4.1E-10 62.3 11.0 84 43-133 2-92 (111)
41 cd00196 UBQ Ubiquitin-like pro 98.1 2.3E-05 4.9E-10 48.5 7.4 64 51-128 5-68 (69)
42 KOG0003 Ubiquitin/60s ribosoma 98.1 6.9E-07 1.5E-11 71.9 0.3 76 44-133 1-76 (128)
43 PF08817 YukD: WXG100 protein 98.1 1.2E-05 2.5E-10 58.8 6.7 75 44-126 3-78 (79)
44 KOG0005 Ubiquitin-like protein 98.1 6.6E-06 1.4E-10 60.3 4.7 70 44-127 1-70 (70)
45 KOG0001 Ubiquitin and ubiquiti 97.7 0.00074 1.6E-08 44.7 9.1 72 46-131 2-73 (75)
46 KOG4248 Ubiquitin-like protein 97.4 0.00024 5.3E-09 73.5 6.3 74 45-133 4-77 (1143)
47 cd01788 ElonginB Ubiquitin-lik 97.0 0.003 6.5E-08 51.2 7.5 62 44-120 3-64 (119)
48 cd01770 p47_UBX p47-like ubiqu 96.7 0.014 3E-07 43.3 8.3 69 42-122 3-73 (79)
49 PF00789 UBX: UBX domain; Int 96.5 0.04 8.6E-07 39.7 9.5 75 41-127 4-81 (82)
50 KOG1639 Steroid reductase requ 96.5 0.007 1.5E-07 55.1 6.3 75 44-128 1-78 (297)
51 PF10302 DUF2407: DUF2407 ubiq 96.2 0.014 3E-07 45.2 5.9 59 46-116 3-64 (97)
52 COG5417 Uncharacterized small 96.0 0.051 1.1E-06 41.4 7.8 73 44-125 5-79 (81)
53 KOG1769 Ubiquitin-like protein 96.0 0.076 1.6E-06 42.0 9.1 79 41-133 18-96 (99)
54 PF09379 FERM_N: FERM N-termin 95.6 0.12 2.5E-06 36.7 8.1 70 48-129 1-77 (80)
55 KOG1872 Ubiquitin-specific pro 95.0 0.057 1.2E-06 52.3 6.3 74 44-132 4-78 (473)
56 cd01767 UBX UBX (ubiquitin reg 94.6 0.36 7.8E-06 34.7 8.3 69 43-126 2-74 (77)
57 PF14453 ThiS-like: ThiS-like 94.6 0.15 3.3E-06 36.5 6.1 56 44-129 1-56 (57)
58 cd01811 OASL_repeat1 2'-5' oli 94.2 0.36 7.7E-06 36.9 7.6 74 44-127 1-74 (80)
59 smart00166 UBX Domain present 93.9 0.69 1.5E-05 33.5 8.5 74 41-127 2-79 (80)
60 KOG3493 Ubiquitin-like protein 93.8 0.033 7.2E-07 41.6 1.5 67 45-125 3-69 (73)
61 PF11470 TUG-UBL1: GLUT4 regul 93.4 0.41 8.9E-06 34.7 6.6 62 50-125 3-64 (65)
62 PF15044 CLU_N: Mitochondrial 93.4 0.15 3.3E-06 37.6 4.4 56 60-128 1-57 (76)
63 cd01772 SAKS1_UBX SAKS1-like U 93.2 0.7 1.5E-05 33.8 7.7 73 43-127 4-78 (79)
64 KOG4495 RNA polymerase II tran 93.0 0.18 3.9E-06 40.3 4.6 64 44-120 3-66 (110)
65 PLN02799 Molybdopterin synthas 92.8 0.35 7.7E-06 34.9 5.6 73 44-132 2-81 (82)
66 smart00295 B41 Band 4.1 homolo 92.8 1.7 3.6E-05 35.0 10.0 80 42-133 2-87 (207)
67 PF13019 Telomere_Sde2: Telome 91.6 1.2 2.7E-05 37.8 8.2 79 44-134 1-89 (162)
68 cd01774 Faf1_like2_UBX Faf1 ik 90.9 3 6.5E-05 31.3 8.9 71 42-126 3-82 (85)
69 TIGR01687 moaD_arch MoaD famil 90.9 2.2 4.9E-05 31.0 8.0 67 54-132 16-87 (88)
70 cd00754 MoaD Ubiquitin domain 90.8 0.99 2.2E-05 31.8 5.9 63 55-132 17-79 (80)
71 TIGR01682 moaD molybdopterin c 90.3 1.5 3.3E-05 31.5 6.6 62 55-132 17-79 (80)
72 TIGR02958 sec_mycoba_snm4 secr 89.2 2.2 4.8E-05 40.8 8.6 78 44-130 3-81 (452)
73 PF02597 ThiS: ThiS family; I 88.0 1.3 2.7E-05 30.9 4.7 63 55-132 13-76 (77)
74 COG5227 SMT3 Ubiquitin-like pr 87.7 2.2 4.7E-05 33.9 6.2 70 42-125 23-92 (103)
75 PRK06488 sulfur carrier protei 85.1 7 0.00015 27.2 7.2 63 44-131 1-63 (65)
76 KOG0006 E3 ubiquitin-protein l 84.6 2.1 4.5E-05 40.8 5.5 56 56-125 16-71 (446)
77 PRK08364 sulfur carrier protei 84.1 11 0.00023 26.9 8.0 63 44-132 5-69 (70)
78 cd01775 CYR1_RA Ubiquitin doma 83.3 6 0.00013 31.2 6.8 38 45-82 4-41 (97)
79 PF10209 DUF2340: Uncharacteri 82.7 3.4 7.3E-05 33.8 5.4 70 60-129 22-108 (122)
80 PRK08053 sulfur carrier protei 82.3 14 0.00031 25.8 7.9 64 44-131 1-64 (66)
81 PF14836 Ubiquitin_3: Ubiquiti 77.6 6.2 0.00014 30.5 5.1 68 55-132 15-83 (88)
82 KOG3391 Transcriptional co-rep 77.5 3.9 8.5E-05 34.5 4.3 72 63-134 61-141 (151)
83 KOG0012 DNA damage inducible p 76.9 4.2 9.2E-05 38.8 4.8 75 46-133 5-80 (380)
84 PF08337 Plexin_cytopl: Plexin 76.3 15 0.00032 36.6 8.6 114 24-137 165-297 (539)
85 KOG3206 Alpha-tubulin folding 75.4 11 0.00023 34.0 6.6 67 56-134 15-86 (234)
86 PRK11130 moaD molybdopterin sy 75.0 13 0.00027 27.0 6.0 56 63-132 25-80 (81)
87 PF11834 DUF3354: Domain of un 74.9 5.1 0.00011 29.5 3.8 47 58-127 22-69 (69)
88 PRK05863 sulfur carrier protei 74.7 22 0.00048 24.9 7.0 63 44-131 1-63 (65)
89 PF06487 SAP18: Sin3 associate 74.2 13 0.00029 30.0 6.4 74 53-127 36-119 (120)
90 cd01771 Faf1_UBX Faf1 UBX doma 74.2 32 0.0007 25.4 8.0 75 41-127 2-78 (80)
91 smart00666 PB1 PB1 domain. Pho 74.1 20 0.00043 25.3 6.7 37 44-81 2-38 (81)
92 KOG4583 Membrane-associated ER 74.0 2.7 5.8E-05 40.0 2.7 68 41-120 7-76 (391)
93 PRK07440 hypothetical protein; 71.1 36 0.00078 24.5 8.1 65 43-131 4-68 (70)
94 PRK06944 sulfur carrier protei 69.0 34 0.00073 23.4 7.7 63 44-131 1-63 (65)
95 PRK07696 sulfur carrier protei 68.4 40 0.00086 23.9 7.5 64 44-131 1-65 (67)
96 cd01773 Faf1_like1_UBX Faf1 ik 67.8 51 0.0011 25.0 9.0 74 42-129 4-81 (82)
97 PF07929 PRiA4_ORF3: Plasmid p 66.6 28 0.00061 28.6 7.0 24 56-79 20-43 (179)
98 PF00788 RA: Ras association ( 66.1 36 0.00079 24.0 6.7 34 46-79 5-42 (93)
99 cd00565 ThiS ThiaminS ubiquiti 66.0 29 0.00063 24.0 6.0 61 51-132 4-64 (65)
100 PF14533 USP7_C2: Ubiquitin-sp 65.8 11 0.00024 32.4 4.5 41 42-82 19-62 (213)
101 PRK06437 hypothetical protein; 65.3 47 0.001 23.6 7.3 56 53-131 10-65 (67)
102 TIGR01683 thiS thiamine biosyn 64.6 44 0.00095 23.1 6.6 60 51-131 3-62 (64)
103 PF12053 DUF3534: Domain of un 62.3 28 0.0006 29.2 6.1 80 44-130 1-81 (145)
104 cd06407 PB1_NLP A PB1 domain i 61.6 37 0.00079 25.4 6.1 57 44-102 1-57 (82)
105 KOG2086 Protein tyrosine phosp 60.9 27 0.00059 33.5 6.5 69 42-122 304-374 (380)
106 PF00564 PB1: PB1 domain; Int 59.8 58 0.0012 22.9 6.7 37 44-80 2-38 (84)
107 PF14732 UAE_UbL: Ubiquitin/SU 58.6 9.1 0.0002 28.8 2.4 61 62-131 7-71 (87)
108 PRK05659 sulfur carrier protei 57.8 59 0.0013 22.3 7.6 64 44-131 1-64 (66)
109 COG1977 MoaD Molybdopterin con 57.0 18 0.00038 26.8 3.7 57 63-132 27-83 (84)
110 PRK01777 hypothetical protein; 55.4 47 0.001 25.6 6.0 78 43-136 3-83 (95)
111 PF02991 Atg8: Autophagy prote 55.0 47 0.001 26.1 6.0 45 58-115 37-81 (104)
112 cd01666 TGS_DRG_C TGS_DRG_C: 54.7 69 0.0015 23.6 6.5 69 44-127 2-74 (75)
113 cd05992 PB1 The PB1 domain is 54.0 60 0.0013 22.6 6.0 36 45-81 2-38 (81)
114 KOG4146 Ubiquitin-like protein 54.0 1.1E+02 0.0024 24.4 8.4 62 62-130 34-98 (101)
115 KOG0013 Uncharacterized conser 52.7 20 0.00043 32.2 4.0 73 44-131 148-220 (231)
116 smart00314 RA Ras association 51.5 81 0.0018 22.7 6.5 28 53-80 15-42 (90)
117 COG2104 ThiS Sulfur transfer p 50.8 92 0.002 22.7 6.6 64 44-131 3-66 (68)
118 PRK06083 sulfur carrier protei 49.8 1.1E+02 0.0024 23.0 7.9 65 43-131 18-82 (84)
119 cd06408 PB1_NoxR The PB1 domai 49.0 63 0.0014 24.8 5.7 56 43-103 2-57 (86)
120 PF12436 USP7_ICP0_bdg: ICP0-b 48.5 22 0.00047 31.3 3.6 63 57-132 88-155 (249)
121 cd01768 RA RA (Ras-associating 47.2 1E+02 0.0022 22.0 8.5 28 53-80 12-39 (87)
122 PRK08640 sdhB succinate dehydr 46.3 49 0.0011 29.3 5.4 36 41-76 3-45 (249)
123 cd01764 Urm1 Urm1-like ubuitin 45.8 74 0.0016 24.1 5.7 61 60-131 25-92 (94)
124 PF09269 DUF1967: Domain of un 43.9 12 0.00027 27.0 1.1 17 110-126 46-62 (69)
125 PF02824 TGS: TGS domain; Int 43.9 96 0.0021 21.4 5.6 58 47-127 2-59 (60)
126 cd01766 Ufm1 Urm1-like ubiquit 43.4 1.1E+02 0.0025 23.5 6.2 74 44-130 5-79 (82)
127 PF03931 Skp1_POZ: Skp1 family 43.3 26 0.00056 24.3 2.6 25 44-68 1-28 (62)
128 PF08825 E2_bind: E2 binding d 43.2 38 0.00082 25.6 3.7 64 58-128 1-70 (84)
129 cd01787 GRB7_RA RA (RAS-associ 42.6 1.1E+02 0.0024 23.6 6.2 38 45-82 4-41 (85)
130 PF02192 PI3K_p85B: PI3-kinase 41.3 41 0.00089 25.2 3.6 26 56-81 2-27 (78)
131 cd06411 PB1_p51 The PB1 domain 41.1 51 0.0011 25.1 4.0 29 56-84 9-37 (78)
132 TIGR03595 Obg_CgtA_exten Obg f 41.0 17 0.00036 26.4 1.4 18 110-127 46-63 (69)
133 PF10790 DUF2604: Protein of U 40.5 96 0.0021 23.4 5.4 67 52-129 4-71 (76)
134 PF04126 Cyclophil_like: Cyclo 39.3 27 0.00058 27.6 2.5 29 44-73 1-29 (120)
135 TIGR03221 muco_delta muconolac 38.8 21 0.00046 27.8 1.8 38 55-96 5-45 (90)
136 cd01611 GABARAP Ubiquitin doma 38.6 1.6E+02 0.0035 23.3 6.8 56 58-127 45-104 (112)
137 PF00794 PI3K_rbd: PI3-kinase 37.6 1E+02 0.0022 23.2 5.4 38 39-76 12-50 (106)
138 cd04938 TGS_Obg-like TGS_Obg-l 37.5 76 0.0016 23.3 4.5 51 57-127 25-75 (76)
139 PF01376 Enterotoxin_b: Heat-l 33.7 59 0.0013 25.6 3.5 45 33-77 24-69 (102)
140 PRK11840 bifunctional sulfur c 33.2 1.9E+02 0.004 27.4 7.2 68 44-135 1-68 (326)
141 PRK13552 frdB fumarate reducta 32.5 84 0.0018 27.6 4.7 35 42-76 3-46 (239)
142 cd06406 PB1_P67 A PB1 domain i 32.1 1.7E+02 0.0037 22.3 5.6 29 55-83 12-40 (80)
143 cd01669 TGS_Ygr210_C TGS_Ygr21 29.3 2.2E+02 0.0047 21.0 5.7 21 57-77 24-44 (76)
144 PRK10872 relA (p)ppGpp synthet 28.9 1.5E+02 0.0033 30.7 6.5 60 45-129 405-466 (743)
145 PF12754 Blt1: Cell-cycle cont 28.7 19 0.00041 33.7 0.0 84 42-135 77-183 (309)
146 COG5100 NPL4 Nuclear pore prot 27.5 1.9E+02 0.004 28.9 6.4 73 44-128 1-78 (571)
147 PRK07570 succinate dehydrogena 27.2 1.4E+02 0.0031 26.6 5.2 48 44-94 3-58 (250)
148 cd01777 SNX27_RA Ubiquitin dom 27.0 2.5E+02 0.0055 21.8 5.9 63 45-136 3-65 (87)
149 smart00143 PI3K_p85B PI3-kinas 26.6 84 0.0018 23.8 3.2 25 56-80 2-26 (78)
150 PF00276 Ribosomal_L23: Riboso 26.2 1.2E+02 0.0025 23.0 3.9 28 54-81 21-48 (91)
151 PF11069 DUF2870: Protein of u 26.0 71 0.0015 25.4 2.8 33 98-132 3-35 (98)
152 PTZ00490 Ferredoxin superfamil 25.5 1.5E+02 0.0033 24.5 4.8 30 40-69 32-61 (143)
153 PF10407 Cytokin_check_N: Cdc1 24.1 1.3E+02 0.0027 22.5 3.7 29 55-83 4-33 (73)
154 TIGR00691 spoT_relA (p)ppGpp s 24.0 2E+02 0.0043 29.3 6.2 63 44-131 360-424 (683)
155 PTZ00380 microtubule-associate 23.9 87 0.0019 25.5 3.0 58 59-131 46-107 (121)
156 PRK12765 flagellar capping pro 23.2 1.4E+02 0.0031 29.8 4.9 35 41-76 130-164 (595)
157 COG0089 RplW Ribosomal protein 23.0 1.3E+02 0.0028 23.6 3.7 31 51-81 19-49 (94)
158 CHL00030 rpl23 ribosomal prote 22.7 1.4E+02 0.003 23.1 3.8 27 53-79 19-45 (93)
159 TIGR03636 L23_arch archaeal ri 22.1 1.6E+02 0.0035 21.9 4.0 28 54-81 15-42 (77)
160 COG5131 URM1 Ubiquitin-like pr 21.3 4.2E+02 0.0092 21.0 6.5 32 94-130 60-93 (96)
161 COG1163 DRG Predicted GTPase [ 21.2 2.1E+02 0.0045 27.6 5.4 73 42-128 289-364 (365)
162 smart00144 PI3K_rbd PI3-kinase 21.0 3.4E+02 0.0074 20.9 5.8 39 38-76 12-51 (108)
163 PF09138 Urm1: Urm1 (Ubiquitin 20.7 2.7E+02 0.006 21.7 5.1 69 55-130 19-93 (96)
164 PRK05738 rplW 50S ribosomal pr 20.3 1.7E+02 0.0037 22.2 3.8 29 53-81 20-48 (92)
No 1
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.55 E-value=2.7e-14 Score=104.22 Aligned_cols=76 Identities=18% Similarity=0.379 Sum_probs=66.4
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
+|+|+|+...|+.++|+|+.++||+|||+.|++.+..++++ .+|+|.|+ +++|+ +|.+|||++|+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~-------------qrL~~~Gk-~L~d~-~L~~~gi~~~~ 65 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKER-------------LALLHRET-RLSSG-KLQDLGLGDGS 65 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHH-------------EEEEECCc-CCCCC-cHHHcCCCCCC
Confidence 59999999999999999999999999999999998666654 36999995 55677 99999999999
Q ss_pred EEEEEEecccc
Q 040719 123 ELQFSRHMSLD 133 (205)
Q Consensus 123 ~L~Fk~rl~~~ 133 (205)
+|+++..+...
T Consensus 66 ~i~l~~~~~~~ 76 (78)
T cd01804 66 KLTLVPTVEAG 76 (78)
T ss_pred EEEEEeecccc
Confidence 99999887543
No 2
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.53 E-value=3.9e-14 Score=103.25 Aligned_cols=71 Identities=20% Similarity=0.275 Sum_probs=63.8
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
.|+|+|+.+.|+.+.++|++++||+|||++|++.+..++++ | .|+|.| ++++|+.+|.+|||++|+
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~--q-----------rLi~~G-k~L~D~~tL~~ygi~~~s 66 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEK--I-----------VLKKWY-TIFKDHISLGDYEIHDGM 66 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHH--E-----------EEEeCC-cCCCCCCCHHHcCCCCCC
Confidence 38999999999999999999999999999999998766665 2 699999 677889999999999999
Q ss_pred EEEEE
Q 040719 123 ELQFS 127 (205)
Q Consensus 123 ~L~Fk 127 (205)
+||+-
T Consensus 67 tv~l~ 71 (73)
T cd01791 67 NLELY 71 (73)
T ss_pred EEEEE
Confidence 99874
No 3
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.45 E-value=7.2e-13 Score=93.29 Aligned_cols=75 Identities=23% Similarity=0.459 Sum_probs=66.0
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+..+|+.+.++|+.+.||++||+.|+..+..++.. ..|+|+|+.| .|+.+|.+|||++|++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~-------------qrL~~~g~~L-~d~~tl~~~~i~~g~~ 66 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQ-------------QRLIYSGKQM-NDDKTAADYKLEGGSV 66 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhh-------------EEEEECCeEc-cCCCCHHHcCCCCCCE
Confidence 8999999999999999999999999999999998666654 3588999665 6789999999999999
Q ss_pred EEEEEeccc
Q 040719 124 LQFSRHMSL 132 (205)
Q Consensus 124 L~Fk~rl~~ 132 (205)
|+++.+++.
T Consensus 67 i~l~~~~~g 75 (76)
T cd01806 67 LHLVLALRG 75 (76)
T ss_pred EEEEEEccC
Confidence 999998753
No 4
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.45 E-value=4e-13 Score=98.00 Aligned_cols=72 Identities=21% Similarity=0.256 Sum_probs=63.1
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEE--eeCCeeecCCcchhcccCCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCL--CYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcL--i~~G~KLldD~ktLsdyGIkDG 121 (205)
|.|+|+..+|+.+.++|+.++||+|||+.|++.+..++++ ++| +|+| ++++|+.+|.+|||++|
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~-------------qrL~~~~~G-~~L~D~~tL~~~gi~~g 68 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQ-------------QRLAHLDSR-EVLQDGVPLVSQGLGPG 68 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHH-------------EEEEeccCC-CCCCCCCCHHHcCCCCC
Confidence 8999999999999999999999999999999998665554 356 8888 55678899999999999
Q ss_pred CEEEEEEe
Q 040719 122 DELQFSRH 129 (205)
Q Consensus 122 d~L~Fk~r 129 (205)
++|++..+
T Consensus 69 s~l~l~~~ 76 (80)
T cd01792 69 STVLLVVQ 76 (80)
T ss_pred CEEEEEEE
Confidence 99988765
No 5
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.44 E-value=6e-13 Score=95.25 Aligned_cols=72 Identities=18% Similarity=0.386 Sum_probs=64.3
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+..+|+.+.++|..+.||++||+.|+..+..+++. +.|+|+|+.| .|+.+|.+|||++|++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~-------------q~L~~~G~~L-~d~~~L~~~~i~~~~~ 66 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQ-------------QRLLFKGKAL-ADDKRLSDYSIGPNAK 66 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHH-------------eEEEECCEEC-CCCCCHHHCCCCCCCE
Confidence 8999999999999999999999999999999998665553 3699999665 7789999999999999
Q ss_pred EEEEEe
Q 040719 124 LQFSRH 129 (205)
Q Consensus 124 L~Fk~r 129 (205)
|+++.+
T Consensus 67 l~l~~~ 72 (74)
T cd01807 67 LNLVVR 72 (74)
T ss_pred EEEEEc
Confidence 999876
No 6
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.43 E-value=9.6e-13 Score=92.63 Aligned_cols=75 Identities=16% Similarity=0.380 Sum_probs=66.0
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+..+|+.+.++|+.+.||++||+.|+..+..+++. ..|+|+|.. +.|+.+|.+|||++|++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~-------------q~L~~~g~~-L~d~~~L~~~~i~~~~~ 66 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ-------------QRLIFAGKQ-LEDGRTLSDYNIQKEST 66 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHH-------------eEEEECCEE-CCCCCcHHHcCCCCCCE
Confidence 8999999999999999999999999999999998665543 358899955 57889999999999999
Q ss_pred EEEEEeccc
Q 040719 124 LQFSRHMSL 132 (205)
Q Consensus 124 L~Fk~rl~~ 132 (205)
|++..++..
T Consensus 67 i~l~~~~~g 75 (76)
T cd01803 67 LHLVLRLRG 75 (76)
T ss_pred EEEEEEccC
Confidence 999998753
No 7
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.42 E-value=1.1e-12 Score=93.31 Aligned_cols=73 Identities=23% Similarity=0.436 Sum_probs=63.4
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhcc--CCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTL--SPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~--~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
|+|+|+..+|..+.++|+.++||++||+.|+..... +++. ..|+|+|+.| .|+.+|.+|||++|
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~-------------q~L~~~G~~L-~d~~~L~~~~i~~~ 66 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQ-------------QKLIYSGKIL-KDDTTLEEYKIDEK 66 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhH-------------eEEEECCEEc-cCCCCHHHcCCCCC
Confidence 899999999999999999999999999999999765 4443 3699999555 78899999999999
Q ss_pred CEEEEEEec
Q 040719 122 DELQFSRHM 130 (205)
Q Consensus 122 d~L~Fk~rl 130 (205)
++|++..+-
T Consensus 67 ~~i~~~~~~ 75 (77)
T cd01805 67 DFVVVMVSK 75 (77)
T ss_pred CEEEEEEec
Confidence 999987653
No 8
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.41 E-value=1.5e-12 Score=90.84 Aligned_cols=72 Identities=22% Similarity=0.481 Sum_probs=63.4
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+..+|..+.++|+.++||++||+.|+..+..++.. ..|+|+| ++++|+.+|.+|||++|++
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-------------q~L~~~g-~~L~d~~~L~~~~i~~~~~ 66 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQ-------------QRLIYSG-RVLKDDETLSEYKVEDGHT 66 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHH-------------eEEEECC-EECCCcCcHHHCCCCCCCE
Confidence 7999999999999999999999999999999998665553 2588999 5667889999999999999
Q ss_pred EEEEEe
Q 040719 124 LQFSRH 129 (205)
Q Consensus 124 L~Fk~r 129 (205)
|+++.|
T Consensus 67 l~l~~~ 72 (72)
T cd01809 67 IHLVKR 72 (72)
T ss_pred EEEEeC
Confidence 998864
No 9
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.38 E-value=2.3e-12 Score=91.58 Aligned_cols=71 Identities=18% Similarity=0.431 Sum_probs=60.1
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+...|. +.|+|+.++||++||+.|++....+++ .+.|+|+|+ .+.|+.+|.+|||++|++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~-------------~~~Li~~Gk-~L~d~~tL~~~~i~~~st 65 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQE-------------QLVLIFAGK-ILKDTDTLTQHNIKDGLT 65 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHH-------------HEEEEECCe-EcCCCCcHHHcCCCCCCE
Confidence 68999999997 589999999999999999998754333 257999995 557889999999999999
Q ss_pred EEEEEe
Q 040719 124 LQFSRH 129 (205)
Q Consensus 124 L~Fk~r 129 (205)
|+++.|
T Consensus 66 l~l~~~ 71 (71)
T cd01808 66 VHLVIK 71 (71)
T ss_pred EEEEEC
Confidence 998764
No 10
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.37 E-value=2.4e-12 Score=94.51 Aligned_cols=75 Identities=28% Similarity=0.416 Sum_probs=65.0
Q ss_pred eEEEEEecCCcE-EEEE-eCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 44 IRLSVLKLDGSR-FDVY-IERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 44 MkLtVrkldGs~-f~V~-V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
|+|+|+..+|+. +.++ |+.+.||.+||+.|++....+++. .+|+|+| +.++|+.+|.+|||++|
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~-------------QrLi~~G-k~L~D~~tL~~y~i~~~ 66 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPEC-------------QRLFYRG-KQMEDGHTLFDYNVGLN 66 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHH-------------eEEEeCC-EECCCCCCHHHcCCCCC
Confidence 899999999997 7895 889999999999999987655543 3699999 55689999999999999
Q ss_pred CEEEEEEeccc
Q 040719 122 DELQFSRHMSL 132 (205)
Q Consensus 122 d~L~Fk~rl~~ 132 (205)
++|++..|.-+
T Consensus 67 ~~i~l~~~~~~ 77 (78)
T cd01797 67 DIIQLLVRQDP 77 (78)
T ss_pred CEEEEEEecCC
Confidence 99999988754
No 11
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.37 E-value=2.8e-12 Score=92.00 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=63.5
Q ss_pred EEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEE
Q 040719 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQ 125 (205)
Q Consensus 46 LtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~ 125 (205)
|.|+...|+.+.++|..++||++||+.|+.....+++. ++|+|+|+.| .|+.+|.+|||++|++|+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-------------q~L~~~G~~L-~D~~tL~~~~i~~~~tl~ 66 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQ-------------FWLSFEGRPM-EDEHPLGEYGLKPGCTVF 66 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHH-------------eEEEECCEEC-CCCCCHHHcCCCCCCEEE
Confidence 57899999999999999999999999999987655553 4799999665 678999999999999999
Q ss_pred EEEeccc
Q 040719 126 FSRHMSL 132 (205)
Q Consensus 126 Fk~rl~~ 132 (205)
+..++..
T Consensus 67 l~~~l~g 73 (74)
T cd01810 67 MNLRLRG 73 (74)
T ss_pred EEEEccC
Confidence 9988753
No 12
>PTZ00044 ubiquitin; Provisional
Probab=99.34 E-value=7.4e-12 Score=89.11 Aligned_cols=75 Identities=17% Similarity=0.404 Sum_probs=66.2
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|.|+..+|..+.+.|..+.||++||+.|+.....+++. ..|+|+|+.| .|+.+|.+|||.+|++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~-------------q~L~~~g~~L-~d~~~l~~~~i~~~~~ 66 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQ-------------IRLIYSGKQM-SDDLKLSDYKVVPGST 66 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHH-------------eEEEECCEEc-cCCCcHHHcCCCCCCE
Confidence 8899999999999999999999999999999998655553 4699999655 6889999999999999
Q ss_pred EEEEEeccc
Q 040719 124 LQFSRHMSL 132 (205)
Q Consensus 124 L~Fk~rl~~ 132 (205)
|++..++..
T Consensus 67 i~l~~~~~g 75 (76)
T PTZ00044 67 IHMVLQLRG 75 (76)
T ss_pred EEEEEEccC
Confidence 999988643
No 13
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.34 E-value=8.9e-12 Score=96.30 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=68.2
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
.+.|+|+|+.+.|+.+.++|+.++||++||+.|+.....+++. +.|+|+| +.++|+.+|.+|||++
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~-------------QrLi~~G-k~L~D~~tL~dy~I~~ 90 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQ-------------QHLIWNN-MELEDEYCLNDYNISE 90 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHH-------------EEEEECC-EECCCCCcHHHcCCCC
Confidence 5689999999999999999999999999999999987555443 3699999 5558889999999999
Q ss_pred CCEEEEEEeccc
Q 040719 121 GDELQFSRHMSL 132 (205)
Q Consensus 121 Gd~L~Fk~rl~~ 132 (205)
|++|++..++..
T Consensus 91 ~stL~l~~~l~G 102 (103)
T cd01802 91 GCTLKLVLAMRG 102 (103)
T ss_pred CCEEEEEEecCC
Confidence 999999988753
No 14
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.33 E-value=4.3e-12 Score=94.97 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=59.5
Q ss_pred CeEEEEEecCCcEE--EEEeCCCCcHHHHHHHHHHHhc-cCCCCCCCcccccccccceEEeeCCeeecCCcchhcccC--
Q 040719 43 RIRLSVLKLDGSRF--DVYIERNATVGELRQAIEEVFT-LSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFR-- 117 (205)
Q Consensus 43 aMkLtVrkldGs~f--~V~V~~sATV~DLKkAI~~~f~-~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyG-- 117 (205)
+|+|+|++.+++.+ .|+++.++||+|||+.|+..+. .++.. .| .|||+| |+++|+.+|.+|+
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~-~Q-----------rLIy~G-KiLkD~~tL~~~~~~ 67 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQ-DQ-----------RLIYSG-KLLPDHLKLRDVLRK 67 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChh-He-----------EEEEcC-eeccchhhHHHHhhc
Confidence 48999999999995 4555899999999999999874 33322 23 599999 6778999999997
Q ss_pred CCCCCEEEEE
Q 040719 118 MKDGDELQFS 127 (205)
Q Consensus 118 IkDGd~L~Fk 127 (205)
|.+|.++|++
T Consensus 68 ~~~~~tiHLV 77 (79)
T cd01790 68 QDEYHMVHLV 77 (79)
T ss_pred ccCCceEEEE
Confidence 9999999987
No 15
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.32 E-value=8.8e-12 Score=86.84 Aligned_cols=68 Identities=28% Similarity=0.560 Sum_probs=59.6
Q ss_pred EecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEE
Q 040719 49 LKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSR 128 (205)
Q Consensus 49 rkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~ 128 (205)
+..+|+.|.|+|+.+.||++||+.|+..+..+++. ..|+|+|+.| +|+.+|.+|||++|++|++..
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~-------------~~L~~~G~~L-~d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQ-------------QRLIYNGKEL-DDDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGG-------------EEEEETTEEE-STTSBTGGGTTSTTEEEEEEE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhccccccccccc-------------ceeeeeeecc-cCcCcHHHcCCCCCCEEEEEE
Confidence 46789999999999999999999999998766654 4699999666 999999999999999999887
Q ss_pred ec
Q 040719 129 HM 130 (205)
Q Consensus 129 rl 130 (205)
+.
T Consensus 67 k~ 68 (69)
T PF00240_consen 67 KP 68 (69)
T ss_dssp SS
T ss_pred ec
Confidence 63
No 16
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.31 E-value=1.2e-11 Score=88.74 Aligned_cols=73 Identities=11% Similarity=0.173 Sum_probs=62.2
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|.|+. ++.+.++|+++.||++||..|+.....+++. ..|+|+|+. +.|+.+|.+|||++|++
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-------------q~Li~~Gk~-L~D~~tL~~~~i~~~~t 64 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVED-------------QVLLLAGVP-LEDDATLGQCGVEELCT 64 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHH-------------EEEEECCeE-CCCCCCHHHcCCCCCCE
Confidence 7899966 4678999999999999999999997655553 369999955 57889999999999999
Q ss_pred EEEEEeccc
Q 040719 124 LQFSRHMSL 132 (205)
Q Consensus 124 L~Fk~rl~~ 132 (205)
|+++.|+..
T Consensus 65 l~l~~~l~G 73 (74)
T cd01793 65 LEVAGRLLG 73 (74)
T ss_pred EEEEEecCC
Confidence 999988753
No 17
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.31 E-value=8.8e-12 Score=88.19 Aligned_cols=70 Identities=17% Similarity=0.381 Sum_probs=61.4
Q ss_pred EEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEE
Q 040719 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQ 125 (205)
Q Consensus 46 LtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~ 125 (205)
|.|+..+|..+.++|+++.||++||+.|++....++.. +.|+|+|+.| .|+.+|.+|||++|++||
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-------------q~Li~~G~~L-~d~~~l~~~~i~~~stl~ 66 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQ-------------LRVIFAGKEL-RNTTTIQECDLGQQSILH 66 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHH-------------eEEEECCeEC-CCCCcHHHcCCCCCCEEE
Confidence 57889999999999999999999999999998655543 4699999665 788999999999999999
Q ss_pred EEEe
Q 040719 126 FSRH 129 (205)
Q Consensus 126 Fk~r 129 (205)
++.|
T Consensus 67 l~~~ 70 (70)
T cd01798 67 AVRR 70 (70)
T ss_pred EEeC
Confidence 9875
No 18
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.28 E-value=1.4e-11 Score=88.86 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=60.2
Q ss_pred EEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEE
Q 040719 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQ 125 (205)
Q Consensus 46 LtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~ 125 (205)
|.|+..+|+.++++|++++||++||+.|++....+++. | .|+|+| +.++|+.+|.+|||++|.+||
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~--q-----------~Li~~G-~~L~D~~~l~~~~i~~~~tv~ 66 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCC--Q-----------RWFFSG-KLLTDKTRLQETKIQKDYVVQ 66 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHH--e-----------EEEECC-eECCCCCCHHHcCCCCCCEEE
Confidence 45788999999999999999999999999987655553 2 599999 556889999999999999999
Q ss_pred EEEe
Q 040719 126 FSRH 129 (205)
Q Consensus 126 Fk~r 129 (205)
++.+
T Consensus 67 ~~~~ 70 (70)
T cd01794 67 VIVN 70 (70)
T ss_pred EEeC
Confidence 8753
No 19
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.28 E-value=1.8e-11 Score=85.52 Aligned_cols=69 Identities=26% Similarity=0.444 Sum_probs=59.8
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+.. |..++++|+.++||++||+.|+..+..+++. +.|+|.|+.| .|+.+|.+|||++|++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~-------------q~L~~~g~~l-~d~~~L~~~~i~~g~~ 65 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRD-------------QKLIFKGKER-DDAETLDMSGVKDGSK 65 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHH-------------eEEeeCCccc-CccCcHHHcCCCCCCE
Confidence 68999775 9999999999999999999999998766664 3588999655 6789999999999999
Q ss_pred EEEE
Q 040719 124 LQFS 127 (205)
Q Consensus 124 L~Fk 127 (205)
|++.
T Consensus 66 l~v~ 69 (71)
T cd01812 66 VMLL 69 (71)
T ss_pred EEEe
Confidence 9875
No 20
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.26 E-value=1.8e-11 Score=89.16 Aligned_cols=69 Identities=23% Similarity=0.333 Sum_probs=60.8
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEee---CCeeecCCcchhcccCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCY---DGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~---~G~KLldD~ktLsdyGIkD 120 (205)
|+|+| +..|+.|+|+|+.++||++||+.|++....++++ | .|+| .| ++++|+.+|++|||++
T Consensus 1 ~~i~v-k~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~--Q-----------KLi~~~~~G-k~l~D~~~L~~~~i~~ 65 (74)
T cd01813 1 VPVIV-KWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPER--Q-----------KLLGLKVKG-KPAEDDVKISALKLKP 65 (74)
T ss_pred CEEEE-EECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHH--E-----------EEEeecccC-CcCCCCcCHHHcCCCC
Confidence 67888 8899999999999999999999999998777775 3 3775 77 6778999999999999
Q ss_pred CCEEEEE
Q 040719 121 GDELQFS 127 (205)
Q Consensus 121 Gd~L~Fk 127 (205)
|+.|+++
T Consensus 66 g~~i~lm 72 (74)
T cd01813 66 NTKIMMM 72 (74)
T ss_pred CCEEEEE
Confidence 9999875
No 21
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.23 E-value=3.6e-11 Score=86.19 Aligned_cols=68 Identities=21% Similarity=0.415 Sum_probs=58.3
Q ss_pred EEEEec-CCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEE
Q 040719 46 LSVLKL-DGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDEL 124 (205)
Q Consensus 46 LtVrkl-dGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L 124 (205)
|+|+.. .|..+.|+|++++||++||..|+..+..+++. .+|+|+|+.|.++..+|.+|||++|+.|
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~-------------q~Li~~Gk~L~D~~~~L~~~gi~~~~~l 67 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQ-------------QQLIYNGRELVDNKRLLALYGVKDGDLV 67 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHH-------------eEEEECCeEccCCcccHHHcCCCCCCEE
Confidence 578888 89999999999999999999999998666553 3699999777555578999999999998
Q ss_pred EE
Q 040719 125 QF 126 (205)
Q Consensus 125 ~F 126 (205)
++
T Consensus 68 ~l 69 (71)
T cd01796 68 VL 69 (71)
T ss_pred EE
Confidence 86
No 22
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.18 E-value=4.2e-11 Score=114.14 Aligned_cols=80 Identities=19% Similarity=0.446 Sum_probs=70.6
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
..|+|+|++.++ +++|.|+.++||.+||++|...|..+++. .+|||.| |+++|.+||..|||+||
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dq-------------lvLIfaG-rILKD~dTL~~~gI~Dg 78 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQ-------------LVLIYAG-RILKDDDTLKQYGIQDG 78 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhH-------------eeeeecC-ccccChhhHHHcCCCCC
Confidence 359999988777 89999999999999999999999777774 5899999 77789999999999999
Q ss_pred CEEEEEEeccccccc
Q 040719 122 DELQFSRHMSLDYLH 136 (205)
Q Consensus 122 d~L~Fk~rl~~~~~~ 136 (205)
-+||+|++....-..
T Consensus 79 ~TvHLVik~~~~~~~ 93 (493)
T KOG0010|consen 79 HTVHLVIKSQPRPTG 93 (493)
T ss_pred cEEEEEeccCCCCCC
Confidence 999999998754443
No 23
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.14 E-value=1.9e-10 Score=77.46 Aligned_cols=64 Identities=28% Similarity=0.526 Sum_probs=55.0
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
|+|+|+..+ ..+.++|+.++||++||..|+..+..++.. +.|+|+|+. +.|+.+|.+|||++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~-------------~~L~~~g~~-L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQ-------------QRLIYKGKV-LEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHH-------------EEEEECCEE-CCCCCCHHHcCCcCCC
Confidence 789998888 789999999999999999999998766553 468899955 5678999999999985
No 24
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.12 E-value=2.5e-10 Score=82.53 Aligned_cols=69 Identities=17% Similarity=0.323 Sum_probs=60.1
Q ss_pred ecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEe
Q 040719 50 KLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRH 129 (205)
Q Consensus 50 kldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~r 129 (205)
+++|+.++|+|+.++||++||+.|+.....+++. ..|+|.| ++++|+.+|.+|||++|++|++..+
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~-------------q~L~~~G-~~L~d~~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGK-------------QKLQYEG-IFIKDSNSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHH-------------EEEEECC-EEcCCCCcHHHcCCCCCCEEEEEEe
Confidence 5789999999999999999999999998766654 3699999 5567889999999999999999988
Q ss_pred ccc
Q 040719 130 MSL 132 (205)
Q Consensus 130 l~~ 132 (205)
+..
T Consensus 70 ~~g 72 (76)
T cd01800 70 ERG 72 (76)
T ss_pred cCC
Confidence 754
No 25
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=2.9e-10 Score=105.41 Aligned_cols=72 Identities=25% Similarity=0.448 Sum_probs=62.3
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhc---cCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFT---LSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~---~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
|+|+|++++|+.|.|+|+.+.||.+||+.|+.... .+.+. ..|+|+| |+++|+.+|.+|||++
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~-------------QkLIy~G-kiL~Dd~tL~dy~I~e 66 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQ-------------QKLIYSG-KILSDDKTVREYKIKE 66 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhH-------------eEEEECC-EECCCCCcHHHcCCCC
Confidence 89999999999999999999999999999999875 33332 3699999 6668889999999999
Q ss_pred CCEEEEEEe
Q 040719 121 GDELQFSRH 129 (205)
Q Consensus 121 Gd~L~Fk~r 129 (205)
|++|++...
T Consensus 67 ~~~Ivvmv~ 75 (378)
T TIGR00601 67 KDFVVVMVS 75 (378)
T ss_pred CCEEEEEec
Confidence 999887644
No 26
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.03 E-value=2.6e-09 Score=79.37 Aligned_cols=78 Identities=26% Similarity=0.355 Sum_probs=68.6
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+..|.|.|+..+|+.+.+.|..+.|+..||.+++.....+++. +.|+|+|..| .++.|+.+|||.+
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~-------------~rf~f~G~~L-~~~~T~~~l~m~d 74 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNS-------------VRFLFDGQRI-RDNQTPDDLGMED 74 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccc-------------eEEEECCeEC-CCCCCHHHcCCCC
Confidence 4679999999999999999999999999999999997665543 5799999777 6788999999999
Q ss_pred CCEEEEEEeccc
Q 040719 121 GDELQFSRHMSL 132 (205)
Q Consensus 121 Gd~L~Fk~rl~~ 132 (205)
||+|++.-++..
T Consensus 75 ~d~I~v~l~l~G 86 (87)
T cd01763 75 GDEIEVMLEQTG 86 (87)
T ss_pred CCEEEEEEeccc
Confidence 999999987753
No 27
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.03 E-value=1.3e-09 Score=74.19 Aligned_cols=67 Identities=27% Similarity=0.505 Sum_probs=57.3
Q ss_pred EEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEE
Q 040719 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFS 127 (205)
Q Consensus 48 VrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk 127 (205)
|+..+|..+.+.++.++||.+||+.|++.+..++.. ++|+|+|+. ++|+.+|.+|||++|++|+++
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~-------------~~l~~~g~~-l~d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQ-------------QRLIYAGKI-LKDDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHH-------------EEEEECCcC-CCCcCCHHHCCCCCCCEEEEE
Confidence 667789999999999999999999999998655543 468899955 588999999999999999987
Q ss_pred E
Q 040719 128 R 128 (205)
Q Consensus 128 ~ 128 (205)
.
T Consensus 68 ~ 68 (69)
T cd01769 68 L 68 (69)
T ss_pred E
Confidence 4
No 28
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.94 E-value=5.2e-09 Score=73.74 Aligned_cols=71 Identities=25% Similarity=0.448 Sum_probs=61.3
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+..+|+.+.+.|..+.||..|.+++.+....+++. ++.|.|+|+.| ++++|+.++||++||.
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~------------~~~l~fdG~~L-~~~~T~~~~~ied~d~ 67 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEE------------SIRLIFDGKRL-DPNDTPEDLGIEDGDT 67 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-T------------TEEEEETTEEE--TTSCHHHHT-STTEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccc------------eEEEEECCEEc-CCCCCHHHCCCCCCCE
Confidence 7999999999999999999999999999999998666632 37899999887 6778999999999999
Q ss_pred EEEE
Q 040719 124 LQFS 127 (205)
Q Consensus 124 L~Fk 127 (205)
|.++
T Consensus 68 Idv~ 71 (72)
T PF11976_consen 68 IDVI 71 (72)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
No 29
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=98.86 E-value=3.5e-09 Score=78.87 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=45.7
Q ss_pred CCCCcHHHHHHHHHHHhc--cC-CCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEe
Q 040719 61 ERNATVGELRQAIEEVFT--LS-PTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRH 129 (205)
Q Consensus 61 ~~sATV~DLKkAI~~~f~--~~-pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~r 129 (205)
|.++||.+||+.|+..+. .+ ++. +.|||.| |+++|+.+|.+|||++|++||++++
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dq-------------QrLIy~G-KiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPEL-------------IDLIHCG-RKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHH-------------eEEEeCC-cCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 557999999999999973 23 332 4699999 5668999999999999999999874
No 30
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.82 E-value=1.2e-08 Score=74.83 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=53.7
Q ss_pred cCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC-CCCEEEEE
Q 040719 51 LDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK-DGDELQFS 127 (205)
Q Consensus 51 ldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk-DGd~L~Fk 127 (205)
..|..+.++|+.+.||++||..|+..+..+++. | .| |.|..|.+|..+|.+|||+ +|++|++-
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~--Q-----------rL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAV--Q-----------RW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHH--E-----------EE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 346778899999999999999999998777764 2 57 8998888888999999999 88998864
No 31
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.81 E-value=1.3e-08 Score=73.92 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=51.0
Q ss_pred EEEEEecCCcE---EEEEeCCCCcHHHHHHHHHHHhcc-CCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 45 RLSVLKLDGSR---FDVYIERNATVGELRQAIEEVFTL-SPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 45 kLtVrkldGs~---f~V~V~~sATV~DLKkAI~~~f~~-~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
.|.+.+...+. ++++ +.+|||.|||++|++.+.. ++++ ++ +++.+.|. .+.|+++|.+|||++
T Consensus 2 ~i~~~~~~~k~~~~~~~~-~~~aTV~dlk~~i~~~~~~~~~~R--qr---------l~~~~~g~-~L~d~~tL~~~gv~~ 68 (77)
T cd01801 2 EILDAKRSDKPIGKLKVS-SGDATIADLKKLIAKSSPQLTVNR--QS---------LRLEPKGK-SLKDDDTLVDLGVGA 68 (77)
T ss_pred eeeccccCcCceeecccC-CCCccHHHHHHHHHHHcCCCCcce--eE---------EEeCCCCc-ccCCcccHhhcCCCC
Confidence 34554444133 3444 6889999999999998754 3454 22 34678884 557888999999999
Q ss_pred CCEEEEEE
Q 040719 121 GDELQFSR 128 (205)
Q Consensus 121 Gd~L~Fk~ 128 (205)
|++|+|+.
T Consensus 69 g~~lyvKD 76 (77)
T cd01801 69 GATLYVRD 76 (77)
T ss_pred CCEEEEee
Confidence 99999984
No 32
>PLN02560 enoyl-CoA reductase
Probab=98.73 E-value=3.2e-08 Score=89.55 Aligned_cols=72 Identities=22% Similarity=0.506 Sum_probs=58.6
Q ss_pred eEEEEEecCCcEE---EEEeCCCCcHHHHHHHHHHHhcc-CCCCCCCcccccccccceEEee---CCe---eecCCcchh
Q 040719 44 IRLSVLKLDGSRF---DVYIERNATVGELRQAIEEVFTL-SPTEGQGKISWTNVWGHFCLCY---DGR---KLVNDKTHI 113 (205)
Q Consensus 44 MkLtVrkldGs~f---~V~V~~sATV~DLKkAI~~~f~~-~pe~g~qkISW~~VWk~fcLi~---~G~---KLldD~ktL 113 (205)
|+|+|+.++|+.+ .|+|+.++||+|||++|+++.+. ++++ |+ |++ .|+ +.++|+++|
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~R--qR-----------L~~~~~~gk~~g~~L~d~ktL 67 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSR--QR-----------LTLPLPPGKTRPTVLDDSKSL 67 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhh--eE-----------EEEecCCCCcCccccCCCCCH
Confidence 7899998889887 79999999999999999999754 4554 32 554 231 356788999
Q ss_pred cccCCCCCCEEEEEE
Q 040719 114 RDFRMKDGDELQFSR 128 (205)
Q Consensus 114 sdyGIkDGd~L~Fk~ 128 (205)
+++|+++|++|+||.
T Consensus 68 ~d~gv~~gstLy~kD 82 (308)
T PLN02560 68 KDYGLGDGGTVVFKD 82 (308)
T ss_pred HhcCCCCCceEEEEe
Confidence 999999999999986
No 33
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.67 E-value=6.9e-08 Score=76.34 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=57.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEeccc
Q 040719 55 RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSL 132 (205)
Q Consensus 55 ~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~~ 132 (205)
...++|+.++||.+||..|..+|..+|.. | .|+|+|+-|.+|..||++|||..|+.|++....+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~d--Q-----------kL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP~ 80 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFD--Q-----------NLSIDGKILSDDCATLGTLGVIPESVILLKADEPI 80 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCccc--c-----------eeeecCceeccCCccHHhcCCCCCCEEEEEecCCc
Confidence 35788999999999999999999998886 4 38889999999999999999999999999976543
No 34
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.63 E-value=6.6e-08 Score=88.98 Aligned_cols=75 Identities=24% Similarity=0.392 Sum_probs=65.1
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhc-cCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFT-LSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~-~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
|+|||+.++++.|.++|.++-||.+||+.|+.... .||..+ + .|||+| |++.|..++.+|+|++++
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~-Q-----------kLIy~G-kiL~D~~tv~Eykv~E~~ 67 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQ-Q-----------KLIYSG-KILKDETTVGEYKVKEKK 67 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhh-h-----------eeeecc-eeccCCcchhhhccccCc
Confidence 89999999999999999999999999999999864 355543 3 499999 777999999999999999
Q ss_pred EEEEEEecc
Q 040719 123 ELQFSRHMS 131 (205)
Q Consensus 123 ~L~Fk~rl~ 131 (205)
+|.|+.+-.
T Consensus 68 fiVvMlsK~ 76 (340)
T KOG0011|consen 68 FIVVMLSKD 76 (340)
T ss_pred eEEEEEecC
Confidence 988876544
No 35
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.52 E-value=7.1e-07 Score=66.29 Aligned_cols=73 Identities=21% Similarity=0.352 Sum_probs=55.5
Q ss_pred eEEEEEecC-CcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEE-eeCCe-----eecCCcchhccc
Q 040719 44 IRLSVLKLD-GSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCL-CYDGR-----KLVNDKTHIRDF 116 (205)
Q Consensus 44 MkLtVrkld-Gs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcL-i~~G~-----KLldD~ktLsdy 116 (205)
++|.|.... ....+..++.+.||.+||..++..+..++.. + -| +|+|. .|.+|.++|.+|
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~--m-----------rL~l~~~~~~~~~~l~~d~~~L~~y 68 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASS--M-----------RLQLFDGDDKLVSKLDDDDALLGSY 68 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccc--e-----------EEEEEcCCCCeEeecCCCccEeeec
Confidence 456664432 2224445899999999999999999777765 2 24 46665 478999999999
Q ss_pred CCCCCCEEEEEEe
Q 040719 117 RMKDGDELQFSRH 129 (205)
Q Consensus 117 GIkDGd~L~Fk~r 129 (205)
|++||..||++.-
T Consensus 69 ~~~dg~~IhVvD~ 81 (84)
T cd01789 69 PVDDGCRIHVIDV 81 (84)
T ss_pred cCCCCCEEEEEeC
Confidence 9999999999863
No 36
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.40 E-value=2.1e-06 Score=63.35 Aligned_cols=75 Identities=20% Similarity=0.394 Sum_probs=55.1
Q ss_pred eEEEEEecCCc--EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe--eCC---eeecCCcchhccc
Q 040719 44 IRLSVLKLDGS--RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC--YDG---RKLVNDKTHIRDF 116 (205)
Q Consensus 44 MkLtVrkldGs--~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi--~~G---~KLldD~ktLsdy 116 (205)
++|.|.....+ ..+..++.+.||.|||..|+..+..+++. ++ +.+. .++ ..+.+|.++|.+|
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~--m~---------L~l~~~~~~~~~~~~~dd~~~L~~y 70 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSD--MR---------LQLKSDKDDSKIEELDDDDATLGSY 70 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTT--EE---------EEEE-TSSSSEEEESSGSSSBCCHH
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCccc--EE---------EEEEecCCCccccccCCCccEeecC
Confidence 56777555543 78888999999999999999999877765 22 2232 122 3456889999999
Q ss_pred CCCCCCEEEEEEe
Q 040719 117 RMKDGDELQFSRH 129 (205)
Q Consensus 117 GIkDGd~L~Fk~r 129 (205)
|++||++||++..
T Consensus 71 ~~~dg~~i~V~D~ 83 (87)
T PF14560_consen 71 GIKDGMRIHVVDT 83 (87)
T ss_dssp T-STTEEEEEEE-
T ss_pred CCCCCCEEEEEeC
Confidence 9999999998754
No 37
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=3.4e-07 Score=76.71 Aligned_cols=82 Identities=18% Similarity=0.397 Sum_probs=70.7
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|.|.|+.+.|+.+..+|+.++||..+|..|+..-.-+++. |+ |||.|..|. |..+|+||+|.--.+
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dq--qr-----------lifag~qLe-dgrtlSDY~Iqkest 66 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQ--QR-----------LIFAGKQLE-DGRTLSDYNIQKEST 66 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchh--hh-----------hhhhhcccc-cCCccccccccccce
Confidence 7789999999999999999999999999999875455543 43 999998885 569999999999999
Q ss_pred EEEEEecccccccccc
Q 040719 124 LQFSRHMSLDYLHSKR 139 (205)
Q Consensus 124 L~Fk~rl~~~~~~~~~ 139 (205)
|+++-++...+.-+++
T Consensus 67 l~l~l~l~Gg~kkrkk 82 (156)
T KOG0004|consen 67 LHLVLRLRGGAKKRKK 82 (156)
T ss_pred EEEEEEecCCcccccc
Confidence 9999999998876655
No 38
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.34 E-value=9.3e-07 Score=65.88 Aligned_cols=73 Identities=21% Similarity=0.398 Sum_probs=42.0
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEee--CC-eee-cCCcchhcccC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCY--DG-RKL-VNDKTHIRDFR 117 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~--~G-~KL-ldD~ktLsdyG 117 (205)
+.|-|.|++.+|.. -|+|++++|+.+|++.|++.+..+... + .|.. ++ +.| ..++++|+++|
T Consensus 3 ~~milRvrS~dG~~-Rie~~~~~t~~~L~~kI~~~l~~~~~~--~-----------~L~~~~~~~~~l~s~~~~tl~~lg 68 (80)
T PF11543_consen 3 SSMILRVRSKDGMK-RIEVSPSSTLSDLKEKISEQLSIPDSS--Q-----------SLSKDRNNKEELKSSDSKTLSSLG 68 (80)
T ss_dssp ---EEEEE-SSEEE-EEEE-TTSBHHHHHHHHHHHS---TTT----------------BSSGGGGGCSSS-TT-CCCCT-
T ss_pred ccEEEEEECCCCCE-EEEcCCcccHHHHHHHHHHHcCCCCcc--e-----------EEEecCCCCcccccCCcCCHHHcC
Confidence 57999999998875 788899999999999999998765542 1 1211 12 233 25789999999
Q ss_pred CCCCCEEEEEE
Q 040719 118 MKDGDELQFSR 128 (205)
Q Consensus 118 IkDGd~L~Fk~ 128 (205)
|+.||.|++++
T Consensus 69 lkHGdmlyL~~ 79 (80)
T PF11543_consen 69 LKHGDMLYLKP 79 (80)
T ss_dssp --TT-EEE---
T ss_pred CCCccEEEEec
Confidence 99999887753
No 39
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.34 E-value=1.1e-06 Score=70.19 Aligned_cols=88 Identities=15% Similarity=0.162 Sum_probs=65.1
Q ss_pred CCeEEEEEecCCcEE-EEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccC---
Q 040719 42 PRIRLSVLKLDGSRF-DVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFR--- 117 (205)
Q Consensus 42 ~aMkLtVrkldGs~f-~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyG--- 117 (205)
..+.|..+-.||+-+ +..++.++||++||+.|+.....--+.++ +-+....|||+| |++.|+.||.+|+
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P------~~~~~qKLIysG-KiLeD~~TL~d~~~p~ 75 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGP------KTVNEVKLISAG-KILENSKTVGECRSPV 75 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCC------CCHHHeEEEeCC-eecCCCCcHHHhCCcc
Confidence 357788888999775 56678899999999999987632111111 123345799999 6778999999999
Q ss_pred ---CCCCCEEEEEEeccccccc
Q 040719 118 ---MKDGDELQFSRHMSLDYLH 136 (205)
Q Consensus 118 ---IkDGd~L~Fk~rl~~~~~~ 136 (205)
+....++|++.|-+..-..
T Consensus 76 g~~~~~~~TmHvvlr~~~~~~~ 97 (113)
T cd01814 76 GDIAGGVITMHVVVQPPLADKK 97 (113)
T ss_pred cccCCCceEEEEEecCCCCCcc
Confidence 7777889998887765543
No 40
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.24 E-value=1.9e-05 Score=62.33 Aligned_cols=84 Identities=20% Similarity=0.295 Sum_probs=57.6
Q ss_pred CeEEEEEecCCc-EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 43 RIRLSVLKLDGS-RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 43 aMkLtVrkldGs-~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
.+.|..+..+|+ .-++..+.+.||++||+.|...-+.--+.. -.| +..+.|||.| +++.|+++|.++++.-|
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~--p~s----~~~lRLI~~G-riL~d~~tL~~~~~~~~ 74 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEER--PKS----PSDLRLIYAG-RILEDNKTLSDCRLPSG 74 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSST--T-S----GGGEEEEETT-EEE-SSSBTGGGT--TT
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccC--CCC----hhhEEEEeCC-eecCCcCcHHHhCCCCC
Confidence 578899999999 678888999999999999998652211111 122 3458999999 68899999999999988
Q ss_pred CE------EEEEEecccc
Q 040719 122 DE------LQFSRHMSLD 133 (205)
Q Consensus 122 d~------L~Fk~rl~~~ 133 (205)
+. +|++.|-...
T Consensus 75 ~~~~~~~vmHlvvrp~~~ 92 (111)
T PF13881_consen 75 ETPGGPTVMHLVVRPNAP 92 (111)
T ss_dssp SETT--EEEEEEE-SSSS
T ss_pred CCCCCCEEEEEEecCCCC
Confidence 84 5555554433
No 41
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.11 E-value=2.3e-05 Score=48.53 Aligned_cols=64 Identities=25% Similarity=0.512 Sum_probs=52.1
Q ss_pred cCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEE
Q 040719 51 LDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSR 128 (205)
Q Consensus 51 ldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~ 128 (205)
.+|....+.++.++||.+|++.|...+...+. .|.|.+.|.. ..+...+.++++.+|+.++|..
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~-------------~~~l~~~~~~-~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLPPE-------------QQRLLVNGKI-LPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcChH-------------HeEEEECCeE-CCCCCcHHHcCCCCCCEEEEEe
Confidence 37888889999999999999999999853333 3678888844 4667777899999999999875
No 42
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=6.9e-07 Score=71.87 Aligned_cols=76 Identities=17% Similarity=0.374 Sum_probs=67.5
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|.+.+.++.|+...|+|+++.||..||..|+.+-..+|+. + .|+|+| +.+.|+.||.+|||.--++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~--~-----------~L~~~~-k~LED~~Tla~Y~i~~~~T 66 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQ--Q-----------RLIFAG-KQLEDGRTLADYNIQKEST 66 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHH--H-----------HHHhcc-cccccCCcccccCccchhh
Confidence 5677889999999999999999999999999997777764 2 499999 7779999999999999999
Q ss_pred EEEEEecccc
Q 040719 124 LQFSRHMSLD 133 (205)
Q Consensus 124 L~Fk~rl~~~ 133 (205)
||.+.|+...
T Consensus 67 l~~~~rL~GG 76 (128)
T KOG0003|consen 67 LHLVLRLRGG 76 (128)
T ss_pred hhhhHHHhcC
Confidence 9999998764
No 43
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=98.10 E-value=1.2e-05 Score=58.75 Aligned_cols=75 Identities=24% Similarity=0.398 Sum_probs=51.1
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe-eCCeeecCCcchhcccCCCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC-YDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi-~~G~KLldD~ktLsdyGIkDGd 122 (205)
++|+|.-.+|..+++.+|.+.+|++|-..|-+.+.......... | .|.|. ..|. .++++.+|.++||.||+
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~------~-~~~L~~~~g~-~L~~~~tL~~~gV~dGd 74 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGH------G-QWVLARAGGR-PLDPDQTLADAGVRDGD 74 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-------E--EEEG-GGTE-EEETTSBCGGGT--TT-
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCc------c-eEEEEecCCc-ccCCcCcHhHcCCCCCC
Confidence 68899776789999999999999999999999987543322111 1 35777 6775 56899999999999999
Q ss_pred EEEE
Q 040719 123 ELQF 126 (205)
Q Consensus 123 ~L~F 126 (205)
.|++
T Consensus 75 ~L~L 78 (79)
T PF08817_consen 75 VLVL 78 (79)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9875
No 44
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=6.6e-06 Score=60.32 Aligned_cols=70 Identities=23% Similarity=0.470 Sum_probs=61.5
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|.|.|+++.|+.++++|+++.+|...|..|+++-..+|.. | -|+|.|+.+ .|+.+-.+|.+.-|+.
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~q--q-----------rli~~gkqm-~DD~tA~~Y~~~~GSV 66 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQ--Q-----------RLIYAGKQM-NDDKTAAHYNLLGGSV 66 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchh--h-----------hhhhccccc-cccccHHHhhhcccee
Confidence 7899999999999999999999999999999997777754 4 399999555 7889999999999999
Q ss_pred EEEE
Q 040719 124 LQFS 127 (205)
Q Consensus 124 L~Fk 127 (205)
||++
T Consensus 67 lHlv 70 (70)
T KOG0005|consen 67 LHLV 70 (70)
T ss_pred EeeC
Confidence 8864
No 45
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.65 E-value=0.00074 Score=44.65 Aligned_cols=72 Identities=18% Similarity=0.383 Sum_probs=58.6
Q ss_pred EEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEE
Q 040719 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQ 125 (205)
Q Consensus 46 LtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~ 125 (205)
+.+....|+.+.++|...-+|..+|..|+.....+... .++.+.|+.| .|..+|.+|+|..+..++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~-------------q~~~~~~~~l-~d~~~l~~~~i~~~~~~~ 67 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQ-------------QRLIFGGKPL-EDGRTLADYNIQEGSTLH 67 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCee-------------EEEEECCEEC-cCCCcHHHhCCCCCCEEE
Confidence 45667899999999999999999999999985333332 3588888554 677999999999999999
Q ss_pred EEEecc
Q 040719 126 FSRHMS 131 (205)
Q Consensus 126 Fk~rl~ 131 (205)
+..++.
T Consensus 68 l~~~~~ 73 (75)
T KOG0001|consen 68 LVLSLR 73 (75)
T ss_pred EEEecC
Confidence 888765
No 46
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00024 Score=73.55 Aligned_cols=74 Identities=18% Similarity=0.385 Sum_probs=64.2
Q ss_pred EEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEE
Q 040719 45 RLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDEL 124 (205)
Q Consensus 45 kLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L 124 (205)
.|+|+++|...-.+.|....||.+||..|.+....+.+. | -|||.| +++.|++++++||| ||-.|
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~--q-----------r~i~~g-rvl~~~k~vq~~~v-dgk~~ 68 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEK--Q-----------RLIYQG-RVLQDDKKVQEYNV-DGKVI 68 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhccccccc--c-----------eeeecc-eeeccchhhhhccC-CCeEE
Confidence 489999999999999999999999999999998766665 4 399999 55578999999999 99999
Q ss_pred EEEEecccc
Q 040719 125 QFSRHMSLD 133 (205)
Q Consensus 125 ~Fk~rl~~~ 133 (205)
|++.|-...
T Consensus 69 hlverppp~ 77 (1143)
T KOG4248|consen 69 HLVERPPPQ 77 (1143)
T ss_pred EeeccCCCC
Confidence 999994443
No 47
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.04 E-value=0.003 Score=51.19 Aligned_cols=62 Identities=19% Similarity=0.339 Sum_probs=48.1
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
|=|-| ++..+.+=+....+.||.|||+.|+...+.+|+. |+ |+-++ -+++|++||.+||+.+
T Consensus 3 vFlmI-rR~KTTiF~dakes~tVlelK~~iegI~k~pp~d--Qr-----------L~kd~-qvLeD~kTL~d~g~t~ 64 (119)
T cd01788 3 VFLMI-RRHKTTIFTDAKESTTVYELKRIVEGILKRPPED--QR-----------LYKDD-QLLDDGKTLGDCGFTS 64 (119)
T ss_pred eEEEE-EecceEEEeecCCcccHHHHHHHHHHHhcCChhH--he-----------eecCc-eeecccccHHHcCccc
Confidence 44556 4556666677788999999999999999888876 32 55444 6779999999999954
No 48
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.73 E-value=0.014 Score=43.26 Aligned_cols=69 Identities=14% Similarity=0.257 Sum_probs=54.4
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe--eCCeeecCCcchhcccCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC--YDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi--~~G~KLldD~ktLsdyGIk 119 (205)
+..+|-|+--||+.+......+.||.+|...|........ + +.|.|+ |-.+.|.+++.||.+.|+.
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~--~----------~~f~L~t~fP~k~l~~~~~Tl~eagL~ 70 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFA--A----------RPFTLMTAFPVKELSDESLTLKEANLL 70 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCC--C----------CCEEEecCCCCcccCCCCCcHHHCCCc
Confidence 4578999999999998889999999999999998642211 1 136665 5667788889999999999
Q ss_pred CCC
Q 040719 120 DGD 122 (205)
Q Consensus 120 DGd 122 (205)
+..
T Consensus 71 ~s~ 73 (79)
T cd01770 71 NAV 73 (79)
T ss_pred CcE
Confidence 754
No 49
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.53 E-value=0.04 Score=39.66 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=58.6
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe--eCCeeecCCc-chhcccC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC--YDGRKLVNDK-THIRDFR 117 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi--~~G~KLldD~-ktLsdyG 117 (205)
....+|.|+--||+.+.-....++||.+|..-|.......... .|.|+ |-...+..++ .+|.+.|
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~------------~f~L~~~~Pr~~l~~~~~~tl~e~~ 71 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEES------------DFELITAFPRRELTDEDSKTLEEAG 71 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTS------------SEEEEESSSTEECCSTTTSBTCCCT
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCc------------cEEEEeCCCCcCCCccccccHHHhc
Confidence 3568999999999999888899999999999999886433321 25554 4555665555 7999999
Q ss_pred CCCCCEEEEE
Q 040719 118 MKDGDELQFS 127 (205)
Q Consensus 118 IkDGd~L~Fk 127 (205)
+..+..|++.
T Consensus 72 l~p~~~l~v~ 81 (82)
T PF00789_consen 72 LLPSATLIVE 81 (82)
T ss_dssp TSSCEEEEEE
T ss_pred CCCCeEEEEE
Confidence 9999988875
No 50
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.47 E-value=0.007 Score=55.06 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=52.1
Q ss_pred eEEEEEecCCcE-EE-EEeCCCCcHHHHHHHHHHHhc-cCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 44 IRLSVLKLDGSR-FD-VYIERNATVGELRQAIEEVFT-LSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 44 MkLtVrkldGs~-f~-V~V~~sATV~DLKkAI~~~f~-~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
|.|++.++.+.. .. ..++.++|++||+++|.+... ..+.+..+ ++-+-..|+.| .|+.+|++||..+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~---------tlr~e~kgkpl-~~~s~l~e~~~~s 70 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRL---------TLRVEPKGKPL-IDNSKLQEYGDGS 70 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhh---------eeeccCCCccc-cchhHHHHhccCC
Confidence 778888777733 33 334668999999999988743 33322111 34555667666 5677899999999
Q ss_pred CCEEEEEE
Q 040719 121 GDELQFSR 128 (205)
Q Consensus 121 Gd~L~Fk~ 128 (205)
|+++.|+.
T Consensus 71 ~~~i~vKD 78 (297)
T KOG1639|consen 71 GATIYVKD 78 (297)
T ss_pred CCEEEEec
Confidence 99887764
No 51
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.21 E-value=0.014 Score=45.21 Aligned_cols=59 Identities=29% Similarity=0.400 Sum_probs=40.8
Q ss_pred EEEEecCCcE-EEEEeC--CCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhccc
Q 040719 46 LSVLKLDGSR-FDVYIE--RNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDF 116 (205)
Q Consensus 46 LtVrkldGs~-f~V~V~--~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdy 116 (205)
|+|+..++-. +++.|+ .+.||.+||+.|.....-.+.. + .+.|||+| +++.|...|..-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~--~---------rLRlI~~G-r~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSR--R---------RLRLIYAG-RLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCcc--c---------cEEeeecC-cccCccchhhhh
Confidence 5565555322 455555 7899999999999987222222 2 47899999 777888777654
No 52
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.01 E-value=0.051 Score=41.43 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=50.7
Q ss_pred eEEEE--EecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 44 IRLSV--LKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 44 MkLtV--rkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
|+||| .--+|+.|++.+|.--+|..|=.-+-+..+ ||-..+-+++.=+-+..+|+.++..|.+|||.||
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~k---------is~~~reg~~Ikv~nKa~llsgd~kL~d~~IadG 75 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLK---------ISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADG 75 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhh---------ccccccCCCEEEEeccceEecCCceEEeccccCC
Confidence 55555 344689999999998888777666665532 2222233344444444578889999999999999
Q ss_pred CEEE
Q 040719 122 DELQ 125 (205)
Q Consensus 122 d~L~ 125 (205)
|.|.
T Consensus 76 D~Le 79 (81)
T COG5417 76 DILE 79 (81)
T ss_pred CEEE
Confidence 9875
No 53
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.076 Score=41.95 Aligned_cols=79 Identities=27% Similarity=0.410 Sum_probs=64.7
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+.-++|.|...+++..-+.|..+++..-|.+|..+.- | +| |+.|-..|+|++| .+..|=.++++++
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~------G---l~----~~s~RFlFdG~rI-~~~~TP~~L~mEd 83 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQ------G---LS----MNSLRFLFDGQRI-RETHTPADLEMED 83 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHc------C---Cc----cceEEEEECCcCc-CCCCChhhhCCcC
Confidence 4568999988888888888999999999999988863 2 22 4678999999998 6788999999999
Q ss_pred CCEEEEEEecccc
Q 040719 121 GDELQFSRHMSLD 133 (205)
Q Consensus 121 Gd~L~Fk~rl~~~ 133 (205)
||+|-+.......
T Consensus 84 ~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 84 GDEIEVVQEQTGG 96 (99)
T ss_pred CcEEEEEeecccC
Confidence 9999887655443
No 54
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=95.60 E-value=0.12 Score=36.67 Aligned_cols=70 Identities=23% Similarity=0.281 Sum_probs=52.3
Q ss_pred EEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEee----CC-eeecCCcchhcccCCC--C
Q 040719 48 VLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCY----DG-RKLVNDKTHIRDFRMK--D 120 (205)
Q Consensus 48 VrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~----~G-~KLldD~ktLsdyGIk--D 120 (205)
|.-+||+...++|+.++|+.||=..|.......... -|.|.+ +| ..-++.+++|.+++.+ .
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~------------~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~ 68 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKE------------YFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNP 68 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGG------------GEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSS
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCcc------------EEEEEEeecCCCcceeccCcccHHHHcCCCCC
Confidence 567899999999999999999999999998553221 277777 22 3446888899999888 4
Q ss_pred CCEEEEEEe
Q 040719 121 GDELQFSRH 129 (205)
Q Consensus 121 Gd~L~Fk~r 129 (205)
.-.++|..+
T Consensus 69 ~~~l~frvk 77 (80)
T PF09379_consen 69 PFTLYFRVK 77 (80)
T ss_dssp SEEEEEEES
T ss_pred CEEEEEEEE
Confidence 445777655
No 55
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.057 Score=52.33 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=61.7
Q ss_pred eEEEEEecCCcEEEEE-eCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 44 IRLSVLKLDGSRFDVY-IERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 44 MkLtVrkldGs~f~V~-V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
.+|.| +-.|+.++++ +..++|+..||..+......+|++ |+ +...| ++..|+-.+...+||+|.
T Consensus 4 ~~v~V-KW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeR--QK-----------v~vKG-g~a~dd~~~~al~iKpn~ 68 (473)
T KOG1872|consen 4 DTVIV-KWGGKKYPVETLSTDETPSVLKAQLFALTGVPPER--QK-----------VMVKG-GLAKDDVDWGALQIKPNE 68 (473)
T ss_pred ceEee-eecCccccceeccCCCchHHHHHHHHHhcCCCccc--ee-----------EEEec-ccccccccccccccCCCC
Confidence 35666 7789999999 899999999999999999889997 43 78888 777888788899999999
Q ss_pred EEEEEEeccc
Q 040719 123 ELQFSRHMSL 132 (205)
Q Consensus 123 ~L~Fk~rl~~ 132 (205)
+|+..--...
T Consensus 69 ~lmMmGt~e~ 78 (473)
T KOG1872|consen 69 TLMMMGTAEA 78 (473)
T ss_pred EEEeeccccc
Confidence 9887654443
No 56
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=94.63 E-value=0.36 Score=34.67 Aligned_cols=69 Identities=13% Similarity=0.222 Sum_probs=50.2
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe--eCCeeecC--CcchhcccCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC--YDGRKLVN--DKTHIRDFRM 118 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi--~~G~KLld--D~ktLsdyGI 118 (205)
..+|.|+.-||+.+....+.++||.+|...|...... +..|.|+ |-.+.+.+ .+.+|.+.|+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~--------------~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL 67 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP--------------AEPFTLMTSFPRRVLTDLDYELTLQEAGL 67 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC--------------CCCEEEEeCCCCccCCCCCccCcHHHcCC
Confidence 4578999999999888889999999999999876311 1124444 34445544 6899999999
Q ss_pred CCCCEEEE
Q 040719 119 KDGDELQF 126 (205)
Q Consensus 119 kDGd~L~F 126 (205)
.+ ..+.+
T Consensus 68 ~~-s~~~~ 74 (77)
T cd01767 68 VN-EVVFQ 74 (77)
T ss_pred cc-ceEEE
Confidence 95 43443
No 57
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=94.57 E-value=0.15 Score=36.46 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=40.5
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|.| +|+. +++..++|+.+||+.+... .+ .++++|=... .++-+++||.
T Consensus 1 M~I~v---N~k~--~~~~~~~tl~~lr~~~k~~----~D---------------I~I~NGF~~~------~d~~L~e~D~ 50 (57)
T PF14453_consen 1 MKIKV---NEKE--IETEENTTLFELRKESKPD----AD---------------IVILNGFPTK------EDIELKEGDE 50 (57)
T ss_pred CEEEE---CCEE--EEcCCCcCHHHHHHhhCCC----CC---------------EEEEcCcccC------CccccCCCCE
Confidence 55655 6776 5568889999999876542 11 4688885543 3456899999
Q ss_pred EEEEEe
Q 040719 124 LQFSRH 129 (205)
Q Consensus 124 L~Fk~r 129 (205)
|+|++|
T Consensus 51 v~~Ikk 56 (57)
T PF14453_consen 51 VFLIKK 56 (57)
T ss_pred EEEEeC
Confidence 999986
No 58
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=94.15 E-value=0.36 Score=36.88 Aligned_cols=74 Identities=14% Similarity=0.260 Sum_probs=54.4
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
+.|+|....+..+.+.|.+..+|..||..|.+....+ |.|++|..- -.+...|+.+..+|.+|||=..-.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~---g~qrLsfQe-------pgg~rqlL~s~~sLA~yGiFs~~~ 70 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS---GLQRLSFQE-------PGGERQLLSSRKSLADYGIFSKTN 70 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc---cceEEEeec-------CCcccccccccccHhhhcceeccE
Confidence 5799999999999999999999999999999986443 234422211 012246778999999999977655
Q ss_pred EEEE
Q 040719 124 LQFS 127 (205)
Q Consensus 124 L~Fk 127 (205)
+.+.
T Consensus 71 i~ll 74 (80)
T cd01811 71 ICLL 74 (80)
T ss_pred EEEE
Confidence 5443
No 59
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=93.87 E-value=0.69 Score=33.48 Aligned_cols=74 Identities=18% Similarity=0.287 Sum_probs=52.0
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe--eCCeeecCC--cchhccc
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC--YDGRKLVND--KTHIRDF 116 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi--~~G~KLldD--~ktLsdy 116 (205)
+...+|.|+.-||+.+....+.+.||.+|.+.|..... ..+ ..|.|+ |-.+.+.++ +.+|.+.
T Consensus 2 ~~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~---~~~----------~~f~L~t~~Prk~l~~~d~~~tL~e~ 68 (80)
T smart00166 2 SDQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALT---DGN----------DPFTLNSPFPRRTFTKDDYSKTLLEL 68 (80)
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHccc---CCC----------CCEEEEeCCCCcCCccccccCCHHHC
Confidence 45678999999999998889999999999999944321 111 124443 444344333 5799999
Q ss_pred CCCCCCEEEEE
Q 040719 117 RMKDGDELQFS 127 (205)
Q Consensus 117 GIkDGd~L~Fk 127 (205)
|+-.+..|.+.
T Consensus 69 gL~p~~~l~v~ 79 (80)
T smart00166 69 ALLPSSTLVLE 79 (80)
T ss_pred CCCCceEEEEe
Confidence 99888776653
No 60
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.033 Score=41.55 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=47.8
Q ss_pred EEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEE
Q 040719 45 RLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDEL 124 (205)
Q Consensus 45 kLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L 124 (205)
.+.+.-+=|++..|.-..+.||+|||+.|+....-.++.. .+-..--+.+|.-+|++|-|.+|..+
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~ki--------------vl~k~~~i~kd~I~L~dyeihdg~~l 68 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKI--------------VLKKWYTIFKDHITLSDYEIHDGMNL 68 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHh--------------HHHhhhhhhhcccceeeEEeccCccE
Confidence 3444445577777777889999999999999876555531 11122245678889999999999865
Q ss_pred E
Q 040719 125 Q 125 (205)
Q Consensus 125 ~ 125 (205)
-
T Consensus 69 e 69 (73)
T KOG3493|consen 69 E 69 (73)
T ss_pred E
Confidence 4
No 61
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=93.42 E-value=0.41 Score=34.74 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=41.4
Q ss_pred ecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEE
Q 040719 50 KLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQ 125 (205)
Q Consensus 50 kldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~ 125 (205)
.-++..+.|.|.++.|+.|+=+..-++|...++. |.|.|.+ |.++.+-.++-.|+-+|..|.
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~-------------~~L~h~~-k~ldlslp~R~snL~n~akLe 64 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSS-------------YDLKHNN-KPLDLSLPFRLSNLPNNAKLE 64 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG--------------EEEETT-EEESSS-BHHHH---SS-EEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccc-------------eEEEECC-EEeccccceeecCCCCCCEEe
Confidence 5678899999999999999988888888766653 5899999 555889999999999999875
No 62
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.37 E-value=0.15 Score=37.63 Aligned_cols=56 Identities=25% Similarity=0.402 Sum_probs=44.2
Q ss_pred eCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhccc-CCCCCCEEEEEE
Q 040719 60 IERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDF-RMKDGDELQFSR 128 (205)
Q Consensus 60 V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdy-GIkDGd~L~Fk~ 128 (205)
|..+.||.|+++.+.....-.. -.+|-|.++|+.| ++...|.++ |+++|..|.++.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~------------~Tn~~L~~~g~~L-~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCY------------LTNFSLEHNGQRL-DDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccccc------------eeEEEEEECCCcc-CCchhhhhhhCCCCCcEEEEEe
Confidence 4567899999999988632111 2378999999887 888899988 899999998883
No 63
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.19 E-value=0.7 Score=33.81 Aligned_cols=73 Identities=10% Similarity=0.171 Sum_probs=51.8
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecC--CcchhcccCCCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVN--DKTHIRDFRMKD 120 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLld--D~ktLsdyGIkD 120 (205)
..+|.|+--||+.+....+.++|+.+|...|....... . . + .+...|-.+.+.. .+.||.+.|+.+
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~--~--~---f-----~L~t~fPrk~~~~~d~~~TL~elgL~P 71 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG--G--P---F-----TLMTPFPRKVFTEDDMEKPLQELGLVP 71 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC--C--C---E-----EEEeCCCCeECCcccccCCHHHCCCCC
Confidence 35789999999998888899999999999998753111 1 0 0 2334444544543 368999999999
Q ss_pred CCEEEEE
Q 040719 121 GDELQFS 127 (205)
Q Consensus 121 Gd~L~Fk 127 (205)
...|.+-
T Consensus 72 sa~L~v~ 78 (79)
T cd01772 72 SAVLIVT 78 (79)
T ss_pred ceEEEEe
Confidence 8877653
No 64
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=93.03 E-value=0.18 Score=40.26 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=45.8
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
|=+.| ++..+.+=+.-..+.||.|||..++...+.++.. ++ +|+.-.. -|++|.++|.+.|...
T Consensus 3 ~f~~V-rR~kttif~da~es~tV~elK~~l~gi~~~Pvn~--qr---------L~kmd~e-qlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 3 VFLRV-RRHKTTIFTDAKESSTVFELKRKLEGILKRPVNE--QR---------LYKMDTE-QLLDDGKTLGDCGFTS 66 (110)
T ss_pred eeeee-eecceeEEeecCccccHHHHHHHHHHHHhCCCcc--hh---------eeecCHH-HHhhccchhhhccccc
Confidence 44556 3445555566688999999999999998777654 32 2333333 6779999999998765
No 65
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=92.79 E-value=0.35 Score=34.94 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=44.8
Q ss_pred eEEEEEecC------C-cEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhccc
Q 040719 44 IRLSVLKLD------G-SRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDF 116 (205)
Q Consensus 44 MkLtVrkld------G-s~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdy 116 (205)
|+|+|+-.. | ....++++..+||.+|.+.+...++...+ |...+.+.-+....+ .++
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~-----------~~~~~~vavN~~~v~-----~~~ 65 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEE-----------VRSCCVLALNEEYTT-----ESA 65 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHH-----------HhhCcEEEECCEEcC-----CCc
Confidence 667765432 2 44677888899999999999876521111 111223333324433 345
Q ss_pred CCCCCCEEEEEEeccc
Q 040719 117 RMKDGDELQFSRHMSL 132 (205)
Q Consensus 117 GIkDGd~L~Fk~rl~~ 132 (205)
=+++||+|.|.+-++.
T Consensus 66 ~l~dgDeVai~PpvsG 81 (82)
T PLN02799 66 ALKDGDELAIIPPISG 81 (82)
T ss_pred CcCCCCEEEEeCCCCC
Confidence 6899999999876653
No 66
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=92.75 E-value=1.7 Score=34.96 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=58.8
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCe-----eecCCcchhccc
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGR-----KLVNDKTHIRDF 116 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~-----KLldD~ktLsdy 116 (205)
+.+.|.|...||+...|.|..++||.|+-..|...+.... +.-|.|.+... .-++...+|.+.
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~------------~~~F~L~~~~~~~~~~~~l~~~~~l~~~ 69 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRE------------SEYFGLQFEDPDEDLSHWLDPAKTLLDQ 69 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCc------------cceeEEEEEcCCCCcCeeCCCccCHHHh
Confidence 4678999999999999999999999999999999986522 12366665321 224456677777
Q ss_pred CCC-CCCEEEEEEecccc
Q 040719 117 RMK-DGDELQFSRHMSLD 133 (205)
Q Consensus 117 GIk-DGd~L~Fk~rl~~~ 133 (205)
..+ ..-.++|.+|.-..
T Consensus 70 ~~~~~~~~l~fr~r~~~~ 87 (207)
T smart00295 70 DVKSEPLTLYFRVKFYPP 87 (207)
T ss_pred cCCCCCcEEEEEEEEccC
Confidence 766 45678888887644
No 67
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=91.62 E-value=1.2 Score=37.83 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=55.2
Q ss_pred eEEEEEecCC----cEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEee-CCeeec-CCcchhcccC
Q 040719 44 IRLSVLKLDG----SRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCY-DGRKLV-NDKTHIRDFR 117 (205)
Q Consensus 44 MkLtVrkldG----s~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~-~G~KLl-dD~ktLsdyG 117 (205)
|.|-|...+| ..+.+.++.++||.+|+..|......++.. + +.|.+ .+.+|. .+...+.++.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~--~----------~~L~~~~n~~l~~~~~~~~s~l~ 68 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSS--Q----------LYLTTNSNGQLSPSSDIPLSSLL 68 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccc--e----------eEEEEeCCCeeCCCccccHHhhc
Confidence 6789999999 578999999999999999999987544432 1 23444 454663 4556667766
Q ss_pred CCCCC----EEEEEEeccccc
Q 040719 118 MKDGD----ELQFSRHMSLDY 134 (205)
Q Consensus 118 IkDGd----~L~Fk~rl~~~~ 134 (205)
-.+++ .|++..++...-
T Consensus 69 ~~~~~~~~~~l~l~~rl~GGK 89 (162)
T PF13019_consen 69 SSSQDSDFITLRLSLRLRGGK 89 (162)
T ss_pred cCcCCCCceEEEEEEeccCCC
Confidence 55554 467777776543
No 68
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.95 E-value=3 Score=31.31 Aligned_cols=71 Identities=10% Similarity=0.153 Sum_probs=50.6
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCC--eeec-------CCcch
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG--RKLV-------NDKTH 112 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G--~KLl-------dD~kt 112 (205)
.+.+|.|+--+|+.+.-....+.||.+|...|... ...+ .+|-|+.+= +.+. +.+.|
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~-------------~~f~L~t~FPrr~~~~~~~~~~~~~~T 68 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETP-------------EKFQIVTNFPRRVLPCLPSEGDPPPPT 68 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCC-------------CcEEEecCCCCccccccccccCcCCCC
Confidence 46899999999999888888999999999999542 1222 235555422 3332 34679
Q ss_pred hcccCCCCCCEEEE
Q 040719 113 IRDFRMKDGDELQF 126 (205)
Q Consensus 113 LsdyGIkDGd~L~F 126 (205)
|.+.||.+...|.+
T Consensus 69 L~eaGL~~s~~L~V 82 (85)
T cd01774 69 LLEAGLSNSEVLFV 82 (85)
T ss_pred HHHcCCCCccEEEE
Confidence 99999997765543
No 69
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=90.88 E-value=2.2 Score=30.96 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=41.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhccC-----CCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEE
Q 040719 54 SRFDVYIERNATVGELRQAIEEVFTLS-----PTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSR 128 (205)
Q Consensus 54 s~f~V~V~~sATV~DLKkAI~~~f~~~-----pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~ 128 (205)
....|+++ .+||.||.+++...++.. .+.+. ++.++.+.-+|+-+ +.... .-|++||+|.|.+
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~-------~~~~~~v~vN~~~v-~~~~~---~~l~dgdev~i~P 83 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLG-------LVPNVIILVNGRNV-DWGLG---TELKDGDVVAIFP 83 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCc-------ccccEEEEECCEec-CccCC---CCCCCCCEEEEeC
Confidence 34667777 899999999999886320 11110 22233334455433 32211 5699999999988
Q ss_pred eccc
Q 040719 129 HMSL 132 (205)
Q Consensus 129 rl~~ 132 (205)
-++.
T Consensus 84 pvsG 87 (88)
T TIGR01687 84 PVSG 87 (88)
T ss_pred CCcC
Confidence 7664
No 70
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=90.76 E-value=0.99 Score=31.77 Aligned_cols=63 Identities=25% Similarity=0.174 Sum_probs=41.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEeccc
Q 040719 55 RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSL 132 (205)
Q Consensus 55 ~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~~ 132 (205)
...++++.+.||.||.+.+...+... .+ -+..++.++-+.+... .++-|++||+|.|.+-++.
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~--~~--------~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~G 79 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGL--LE--------ELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSG 79 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchH--HH--------hhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCC
Confidence 35677788999999999999876321 00 1112344443335444 3566999999999887654
No 71
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=90.28 E-value=1.5 Score=31.54 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=41.8
Q ss_pred EEEEEeCCC-CcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEeccc
Q 040719 55 RFDVYIERN-ATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSL 132 (205)
Q Consensus 55 ~f~V~V~~s-ATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~~ 132 (205)
...++++.+ +||.||...+...+..... +...+.++-+.+...+ +.-|++||+|.|.+-++.
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~-----------~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsG 79 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAA-----------SRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSG 79 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhh-----------hccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCC
Confidence 356788877 8999999999988631000 2233444444355443 567999999999987764
No 72
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=89.24 E-value=2.2 Score=40.85 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=58.1
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCC-CCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSP-TEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~p-e~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
-+|||. .+.+..++.+|.+..|+||=-.|-+.+.... +.+. + +.|.|.--|..-++.+.+|.+.||.||+
T Consensus 3 ~RVtV~-~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~-~-------~~w~L~r~gG~pL~~~~sL~~~gV~DG~ 73 (452)
T TIGR02958 3 CRVTVL-AGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELG-A-------VRWALARAGGSPLDPDASLAEAGVRDGE 73 (452)
T ss_pred EEEEEe-eCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCC-C-------cceEEecCCCCCCCCCCCHHHcCCCCCC
Confidence 478885 4456799999999999999999999874322 1111 1 1346666554555889999999999999
Q ss_pred EEEEEEec
Q 040719 123 ELQFSRHM 130 (205)
Q Consensus 123 ~L~Fk~rl 130 (205)
.|++.++-
T Consensus 74 ~L~L~p~~ 81 (452)
T TIGR02958 74 LLVLVPAS 81 (452)
T ss_pred eEEEeeCC
Confidence 99998743
No 73
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=88.02 E-value=1.3 Score=30.93 Aligned_cols=63 Identities=24% Similarity=0.330 Sum_probs=43.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCccccccccc-ceEEeeCCeeecCCcchhcccCCCCCCEEEEEEeccc
Q 040719 55 RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWG-HFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSL 132 (205)
Q Consensus 55 ~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk-~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~~ 132 (205)
...+.++..+||.||.+++...+.... +. .+.+.-+| .+..+ .-.+.-+++||+|.|.+=++.
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~------------~~~~~~v~vN~-~~v~~--~~~~~~l~~gD~V~i~ppvsG 76 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELA------------LRDRVAVAVNG-EIVPD--DGLDTPLKDGDEVAILPPVSG 76 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGH------------TTTTEEEEETT-EEEGG--GTTTSBEETTEEEEEEESTST
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccc------------cCccEEEEECC-EEcCC--ccCCcCcCCCCEEEEECCCCC
Confidence 456778999999999999988763211 11 23444466 55454 355677999999999886653
No 74
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=87.68 E-value=2.2 Score=33.88 Aligned_cols=70 Identities=23% Similarity=0.390 Sum_probs=56.3
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
.-+.|.|.-.+|+.+-+.|..+.|..-|-+|+.+....... .|-..|+|+.+ +-+.|=.++++.+|
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~-------------slRfL~dG~rI-~~dqTP~dldmEdn 88 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMS-------------SLRFLFDGKRI-DLDQTPGDLDMEDN 88 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcc-------------eeEEEEcceec-CCCCChhhcCCccc
Confidence 46788998899999888889999999999998887533222 36788999888 56789999999999
Q ss_pred CEEE
Q 040719 122 DELQ 125 (205)
Q Consensus 122 d~L~ 125 (205)
|+|-
T Consensus 89 d~iE 92 (103)
T COG5227 89 DEIE 92 (103)
T ss_pred hHHH
Confidence 9864
No 75
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=85.10 E-value=7 Score=27.16 Aligned_cols=63 Identities=22% Similarity=0.433 Sum_probs=41.4
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+| +|+.+.+ + .+||.+|-+.+. ..++ .+.+..++ .+.. .....++-+++||+
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l~----~~~~-------------~vavavN~-~iv~-~~~~~~~~L~dgD~ 55 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAELD----YEGN-------------WLATAVNG-ELVH-KEARAQFVLHEGDR 55 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHcC----CCCC-------------eEEEEECC-EEcC-HHHcCccccCCCCE
Confidence 56665 8887776 3 469999987652 2222 13455666 4433 45556778999999
Q ss_pred EEEEEecc
Q 040719 124 LQFSRHMS 131 (205)
Q Consensus 124 L~Fk~rl~ 131 (205)
|-|.+-+.
T Consensus 56 Ieiv~~V~ 63 (65)
T PRK06488 56 IEILSPMQ 63 (65)
T ss_pred EEEEEecc
Confidence 99987664
No 76
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=84.57 E-value=2.1 Score=40.78 Aligned_cols=56 Identities=9% Similarity=0.342 Sum_probs=43.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEE
Q 040719 56 FDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQ 125 (205)
Q Consensus 56 f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~ 125 (205)
|+|+|..+..|.+||+.++.....+++. +-+||.|++| .++.++++..+.--..+|
T Consensus 16 l~v~v~~~t~I~~lke~Vak~~gvp~D~-------------L~viFaGKeL-s~~ttv~~cDL~qqs~~h 71 (446)
T KOG0006|consen 16 LPVEVDSDTSIFQLKEVVAKRQGVPADQ-------------LRVIFAGKEL-SNDTTVQNCDLSQQSATH 71 (446)
T ss_pred eeEEEecCCCHHHHHHHHHHhhCCChhh-------------eEEEEecccc-ccCceeecccccccchhh
Confidence 8999999999999999999998777764 5699999777 556677755554434333
No 77
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=84.12 E-value=11 Score=26.90 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=41.4
Q ss_pred eEEEEEecCCc--EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 44 IRLSVLKLDGS--RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 44 MkLtVrkldGs--~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
|+|++ +|. ...++++.++||.||-+.+. ..++. ..+..+|+-+ . .++-+++|
T Consensus 5 m~v~v---ng~~~~~~~~~~~~~tv~~ll~~l~----~~~~~-------------v~v~vNg~iv-~-----~~~~l~~g 58 (70)
T PRK08364 5 IRVKV---IGRGIEKEIEWRKGMKVADILRAVG----FNTES-------------AIAKVNGKVA-L-----EDDPVKDG 58 (70)
T ss_pred EEEEE---eccccceEEEcCCCCcHHHHHHHcC----CCCcc-------------EEEEECCEEC-C-----CCcCcCCC
Confidence 55555 455 56788899999999987662 22221 3445566333 2 25669999
Q ss_pred CEEEEEEeccc
Q 040719 122 DELQFSRHMSL 132 (205)
Q Consensus 122 d~L~Fk~rl~~ 132 (205)
|.|-|.+-++.
T Consensus 59 D~Veii~~V~G 69 (70)
T PRK08364 59 DYVEVIPVVSG 69 (70)
T ss_pred CEEEEEccccC
Confidence 99999876653
No 78
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=83.26 E-value=6 Score=31.24 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=32.7
Q ss_pred EEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCC
Q 040719 45 RLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPT 82 (205)
Q Consensus 45 kLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe 82 (205)
-|.|-+.||+.-.+..+.++||.||=..+.+++-..+.
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~ 41 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSG 41 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCC
Confidence 46788999999999999999999999999999854443
No 79
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=82.66 E-value=3.4 Score=33.83 Aligned_cols=70 Identities=13% Similarity=0.324 Sum_probs=40.2
Q ss_pred eCC-CCcHHHHHHHHHHHhcc----CCCCCCC----cc-ccccc--ccceEEeeCCe--eec---CCcchhcccCCCCCC
Q 040719 60 IER-NATVGELRQAIEEVFTL----SPTEGQG----KI-SWTNV--WGHFCLCYDGR--KLV---NDKTHIRDFRMKDGD 122 (205)
Q Consensus 60 V~~-sATV~DLKkAI~~~f~~----~pe~g~q----kI-SW~~V--Wk~fcLi~~G~--KLl---dD~ktLsdyGIkDGd 122 (205)
|+. +.||.||++.+.+.+.. +|-+..+ +| .=.|= -.++.+.+++- -++ +++.+|.++||.|..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 444 78999999999998742 1211000 00 00000 01222333221 244 788999999999999
Q ss_pred EEEEEEe
Q 040719 123 ELQFSRH 129 (205)
Q Consensus 123 ~L~Fk~r 129 (205)
+|.|=.+
T Consensus 102 EiSfF~~ 108 (122)
T PF10209_consen 102 EISFFNM 108 (122)
T ss_pred eeeeeCH
Confidence 9988543
No 80
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=82.29 E-value=14 Score=25.82 Aligned_cols=64 Identities=13% Similarity=0.246 Sum_probs=41.5
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+| +|+.+++ +.+.||.+|-+.+. ..+. .+.+-.+++-+ . .+.-.++-+++||.
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~l~----~~~~-------------~vaVavN~~iv-~-r~~w~~~~L~~gD~ 56 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQLN----QLQP-------------GAALAINQQII-P-REQWAQHIVQDGDQ 56 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHHcC----CCCC-------------cEEEEECCEEe-C-hHHcCccccCCCCE
Confidence 56666 7887554 77889999986532 2221 14566677444 2 34455667999999
Q ss_pred EEEEEecc
Q 040719 124 LQFSRHMS 131 (205)
Q Consensus 124 L~Fk~rl~ 131 (205)
|-++.-+.
T Consensus 57 Ieii~~v~ 64 (66)
T PRK08053 57 ILLFQVIA 64 (66)
T ss_pred EEEEEEcc
Confidence 98887654
No 81
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=77.65 E-value=6.2 Score=30.49 Aligned_cols=68 Identities=13% Similarity=0.323 Sum_probs=41.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCC-eeecCCcchhcccCCCCCCEEEEEEeccc
Q 040719 55 RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG-RKLVNDKTHIRDFRMKDGDELQFSRHMSL 132 (205)
Q Consensus 55 ~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G-~KLldD~ktLsdyGIkDGd~L~Fk~rl~~ 132 (205)
.+........||+.+.+.+.+.|....+ - ++|..|- -++ ..|.+...||.+.||.+|..|.+-.|...
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i~~E---~-----RLW~~~~--~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~D 83 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNIQEE---T-----RLWNKYS--ENSYELLNNPEITVEDAGLYDGQVVLIEERNED 83 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT-TS----E-----EEEEECT--TTCEEEE--TTSBTTTTT--TTEEEEEEE--TT
T ss_pred HhHhhccccChHHHHHHHHHHHhCCCcc---c-----eehhccC--CcchhhhCCCCccHHHccCcCCCEEEEEeeccC
Confidence 3455668889999999999999977222 1 2444331 112 34556678999999999999988877643
No 82
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=77.50 E-value=3.9 Score=34.47 Aligned_cols=72 Identities=22% Similarity=0.219 Sum_probs=47.9
Q ss_pred CCcHHHHHHHHHHHhccCCCCCCC---------cccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEecccc
Q 040719 63 NATVGELRQAIEEVFTLSPTEGQG---------KISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLD 133 (205)
Q Consensus 63 sATV~DLKkAI~~~f~~~pe~g~q---------kISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~~~ 133 (205)
+||..||-..|.+........|-. +-+=+|+-+..-....|.|..+|+++|++.+++=||.|-+.+.....
T Consensus 61 datL~ELtsLvkevnpeaR~kgt~f~fa~Vf~d~~~~~y~~RevG~t~~g~Kg~ddnktL~~~kf~iGD~lDVaI~~p~~ 140 (151)
T KOG3391|consen 61 DATLRELTSLVKEVNPEARKKGTSFDFAVVFPDKKSPRYIVREVGTTCLGRKGIDDNKTLQQTKFEIGDYLDVAITPPNR 140 (151)
T ss_pred hhhHHHHHHHHHHcCHHHhccCceEEEEEEeccCCCCCceeeeecccccCcccCCccchhhhCCccccceEEEEecCccc
Confidence 599999999999864321111100 00112444444444457899999999999999999999888776544
Q ss_pred c
Q 040719 134 Y 134 (205)
Q Consensus 134 ~ 134 (205)
.
T Consensus 141 ~ 141 (151)
T KOG3391|consen 141 R 141 (151)
T ss_pred C
Confidence 3
No 83
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=76.91 E-value=4.2 Score=38.78 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=56.3
Q ss_pred EEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCC-cchhcccCCCCCCEE
Q 040719 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVND-KTHIRDFRMKDGDEL 124 (205)
Q Consensus 46 LtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD-~ktLsdyGIkDGd~L 124 (205)
|++....-+.|+++|...-....|+.-+......+... .-|+|++-++..+ ...|.++|+++||.|
T Consensus 5 vs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~-------------~~li~n~~~l~s~~s~~l~Q~g~~~~dsl 71 (380)
T KOG0012|consen 5 VSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDP-------------SDLIYNPRPLVSNESQGLTQIGLKDGDSL 71 (380)
T ss_pred EEEEecceeeeccccccccchhhHHHHHHHHhCcccch-------------hhcccCCCccccchhhhhhhcccccceeE
Confidence 33333366778998888888888888887776443332 1377888788766 788999999999999
Q ss_pred EEEEecccc
Q 040719 125 QFSRHMSLD 133 (205)
Q Consensus 125 ~Fk~rl~~~ 133 (205)
.|-.+-+..
T Consensus 72 ~lr~ks~d~ 80 (380)
T KOG0012|consen 72 ALRCKSSDP 80 (380)
T ss_pred eccCCCCCC
Confidence 998887766
No 84
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=76.32 E-value=15 Score=36.58 Aligned_cols=114 Identities=17% Similarity=0.271 Sum_probs=56.2
Q ss_pred CcCCCccccCCCccccCC-----CCeEEEEEecCC--cEEEEEeCCCCcHHHHHHHHHHHh-ccCC-----CCCCCcccc
Q 040719 24 DCYEGNSVRTMPYLKLPQ-----PRIRLSVLKLDG--SRFDVYIERNATVGELRQAIEEVF-TLSP-----TEGQGKISW 90 (205)
Q Consensus 24 ~~~~~~~~~~~s~~al~~-----~aMkLtVrkldG--s~f~V~V~~sATV~DLKkAI~~~f-~~~p-----e~g~qkISW 90 (205)
|++-|=++-+.+..+|=. ..|+|.|.-.++ ..++|.|-.-.||.+.|+.|-.++ +..| ....--+-|
T Consensus 165 DaiTg~ArYTLnE~~LLre~id~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEw 244 (539)
T PF08337_consen 165 DAITGKARYTLNEDKLLREQIDYKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEW 244 (539)
T ss_dssp -TTT--BTT-SSCCCB--SSS-S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEE
T ss_pred hhhhcceeeeechhhhhccccceEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceee
Confidence 455555555666666552 468888765443 458999988899999998888775 2211 111112234
Q ss_pred cccccce-EEeeCC--eeecCC---cchhcccCCCCCCEEEEEEecccccccc
Q 040719 91 TNVWGHF-CLCYDG--RKLVND---KTHIRDFRMKDGDELQFSRHMSLDYLHS 137 (205)
Q Consensus 91 ~~VWk~f-cLi~~G--~KLldD---~ktLsdyGIkDGd~L~Fk~rl~~~~~~~ 137 (205)
++==... .|--.+ .++..+ =.||..|||.||.+|.++.+....++..
T Consensus 245 r~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dga~vaLv~k~~~~~~~~ 297 (539)
T PF08337_consen 245 RQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDGATVALVPKQHSSYNQS 297 (539)
T ss_dssp EETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TTEEEEEEES--------
T ss_pred ecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCCceEEEeeccccccccC
Confidence 3321111 111110 011111 1589999999999999999987666654
No 85
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=75.38 E-value=11 Score=33.95 Aligned_cols=67 Identities=13% Similarity=0.236 Sum_probs=50.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCC-----eeecCCcchhcccCCCCCCEEEEEEec
Q 040719 56 FDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG-----RKLVNDKTHIRDFRMKDGDELQFSRHM 130 (205)
Q Consensus 56 f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G-----~KLldD~ktLsdyGIkDGd~L~Fk~rl 130 (205)
++...+.+.||++||..++-...-.++.. . .-.|.| ..|.++++.|..|+..||-.||++..-
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M-~-----------l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~ 82 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESM-E-----------LELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN 82 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccce-E-----------EEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence 56677999999999999999875544421 1 122333 377889999999999999999999887
Q ss_pred cccc
Q 040719 131 SLDY 134 (205)
Q Consensus 131 ~~~~ 134 (205)
...-
T Consensus 83 ~~~~ 86 (234)
T KOG3206|consen 83 AQSI 86 (234)
T ss_pred cccc
Confidence 6554
No 86
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=75.01 E-value=13 Score=27.03 Aligned_cols=56 Identities=27% Similarity=0.227 Sum_probs=32.6
Q ss_pred CCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEeccc
Q 040719 63 NATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSL 132 (205)
Q Consensus 63 sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~~ 132 (205)
.+||.+|++.+.+.+...... . ..+++ .++-+..+..+ +.=|++||+|-|.+-++.
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~-----~---~~~~~-~~aVN~~~~~~-----~~~l~dgDeVai~PPVsG 80 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALA-----L---EDGKL-LAAVNQTLVSF-----DHPLTDGDEVAFFPPVTG 80 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhh-----h---cCCCE-EEEECCEEcCC-----CCCCCCCCEEEEeCCCCC
Confidence 589999999999876321000 0 01122 22223244321 335999999999887664
No 87
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=74.90 E-value=5.1 Score=29.50 Aligned_cols=47 Identities=30% Similarity=0.487 Sum_probs=32.1
Q ss_pred EEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhccc-CCCCCCEEEEE
Q 040719 58 VYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDF-RMKDGDELQFS 127 (205)
Q Consensus 58 V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdy-GIkDGd~L~Fk 127 (205)
|.+|. |+.||.+...++|...+. ..+.-+|..+. |- =|+|||.|+|+
T Consensus 22 i~lP~--SleeLl~ia~~kfg~~~~--------------~v~~~dgaeId-------DI~~IRDgD~L~~~ 69 (69)
T PF11834_consen 22 IWLPD--SLEELLKIASEKFGFSAT--------------KVLNEDGAEID-------DIDVIRDGDHLYLV 69 (69)
T ss_pred EEcCc--cHHHHHHHHHHHhCCCce--------------EEEcCCCCEEe-------EEEEEEcCCEEEEC
Confidence 33465 999999999999966422 24555555552 22 38999998874
No 88
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=74.71 E-value=22 Score=24.90 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=39.6
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+| +|..+++ +.++||.||=... ..+++. +.+..++.-+ . ......+ +++||.
T Consensus 1 m~i~v---NG~~~~~--~~~~tl~~ll~~l----~~~~~~-------------vav~~N~~iv-~-r~~~~~~-L~~gD~ 55 (65)
T PRK05863 1 MIVVV---NEEQVEV--DEQTTVAALLDSL----GFPEKG-------------IAVAVDWSVL-P-RSDWATK-LRDGAR 55 (65)
T ss_pred CEEEE---CCEEEEc--CCCCcHHHHHHHc----CCCCCc-------------EEEEECCcCc-C-hhHhhhh-cCCCCE
Confidence 56666 7887554 7788988876543 233332 4666777433 2 3334456 999999
Q ss_pred EEEEEecc
Q 040719 124 LQFSRHMS 131 (205)
Q Consensus 124 L~Fk~rl~ 131 (205)
|-++.-+.
T Consensus 56 ieIv~~Vg 63 (65)
T PRK05863 56 LEVVTAVQ 63 (65)
T ss_pred EEEEeecc
Confidence 98876553
No 89
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=74.25 E-value=13 Score=29.96 Aligned_cols=74 Identities=24% Similarity=0.330 Sum_probs=44.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCccc----------ccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 53 GSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKIS----------WTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 53 Gs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkIS----------W~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
..++.|-.=.+||..||=.-|.......+..|. +++ -+|+=+.+-.+..|.+..+|++||.+.+..-||
T Consensus 36 ~~elqIYtW~d~TLrEL~~Lik~~~~~~r~~~t-r~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGD 114 (120)
T PF06487_consen 36 RNELQIYTWMDATLRELADLIKDVNPPARRRGT-RLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGD 114 (120)
T ss_dssp TTEEEEEE-TT-BHHHHHHHHHHH-HHHHSTT--EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-
T ss_pred cCeeEEEEcccCCHHHHHHHHHHhCcccCCCCC-EEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccCC
Confidence 344556667899999999999886532222221 111 245555666777777778999999999999999
Q ss_pred EEEEE
Q 040719 123 ELQFS 127 (205)
Q Consensus 123 ~L~Fk 127 (205)
.|-+.
T Consensus 115 yidva 119 (120)
T PF06487_consen 115 YIDVA 119 (120)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87654
No 90
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=74.20 E-value=32 Score=25.45 Aligned_cols=75 Identities=11% Similarity=0.189 Sum_probs=52.0
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeec--CCcchhcccCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLV--NDKTHIRDFRM 118 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLl--dD~ktLsdyGI 118 (205)
.+..+|.|+--+|+.+.-.-..++|+.+|-..|... ...+. +| .++..|=-+.+. +.+.+|.+.|+
T Consensus 2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~------~f-----~L~t~fPRk~~~~~d~~~TL~e~gL 69 (80)
T cd01771 2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPID------EY-----KLLSSWPRRDLTQLDPNFTLLELKL 69 (80)
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCC------CE-----EEecCCCCCCCcCCCCCCcHHHcCC
Confidence 457899999999999888889999999999999764 11111 11 122233333442 44579999999
Q ss_pred CCCCEEEEE
Q 040719 119 KDGDELQFS 127 (205)
Q Consensus 119 kDGd~L~Fk 127 (205)
.....|.+-
T Consensus 70 ~p~~~L~Ve 78 (80)
T cd01771 70 YPQETLILE 78 (80)
T ss_pred CCCcEEEEE
Confidence 988877653
No 91
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=74.13 E-value=20 Score=25.34 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=29.5
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSP 81 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~p 81 (205)
++|.+. ..|....+.|+.+.|..||+.+|...|....
T Consensus 2 ~~vK~~-~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~ 38 (81)
T smart00666 2 VDVKLR-YGGETRRLSVPRDISFEDLRSKVAKRFGLDN 38 (81)
T ss_pred ccEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 455563 3677788999999999999999999996543
No 92
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=73.97 E-value=2.7 Score=40.02 Aligned_cols=68 Identities=26% Similarity=0.368 Sum_probs=47.0
Q ss_pred CCCeEEEEEecCCcEEEEE--eCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCC
Q 040719 41 QPRIRLSVLKLDGSRFDVY--IERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRM 118 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~--V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGI 118 (205)
+-..+|.|+.-+-+.-+++ ....-||++||.-.+..+...|-.. +-.|+|+| ||+.|...|+|.=+
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~-----------dqrliYsg-kllld~qcl~d~lr 74 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLEL-----------DQRLIYSG-KLLLDHQCLTDWLR 74 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchh-----------hHHHHhhc-cccccchhHHHHHH
Confidence 3456777755544443444 4567899999999999875433221 22499999 88899999998866
Q ss_pred CC
Q 040719 119 KD 120 (205)
Q Consensus 119 kD 120 (205)
|.
T Consensus 75 kq 76 (391)
T KOG4583|consen 75 KQ 76 (391)
T ss_pred HH
Confidence 64
No 93
>PRK07440 hypothetical protein; Provisional
Probab=71.07 E-value=36 Score=24.47 Aligned_cols=65 Identities=20% Similarity=0.362 Sum_probs=43.4
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
.|+|+| +|+. ++++...||.||=+.+ ...++. +.+..+|+-+. .....++-+++||
T Consensus 4 ~m~i~v---NG~~--~~~~~~~tl~~lL~~l----~~~~~~-------------vav~~N~~iv~--r~~w~~~~L~~gD 59 (70)
T PRK07440 4 PITLQV---NGET--RTCSSGTSLPDLLQQL----GFNPRL-------------VAVEYNGEILH--RQFWEQTQVQPGD 59 (70)
T ss_pred ceEEEE---CCEE--EEcCCCCCHHHHHHHc----CCCCCe-------------EEEEECCEEeC--HHHcCceecCCCC
Confidence 577777 7886 5568889999887533 223332 46677775542 4456667799999
Q ss_pred EEEEEEecc
Q 040719 123 ELQFSRHMS 131 (205)
Q Consensus 123 ~L~Fk~rl~ 131 (205)
.|-++.-+.
T Consensus 60 ~IEIv~~v~ 68 (70)
T PRK07440 60 RLEIVTIVG 68 (70)
T ss_pred EEEEEEEec
Confidence 988776543
No 94
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=69.03 E-value=34 Score=23.36 Aligned_cols=63 Identities=19% Similarity=0.367 Sum_probs=38.6
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+| +|+. ++++..+||.||-+++.- .+. +.+..+| .+... ..-.+.=+++||+
T Consensus 1 m~i~v---Ng~~--~~~~~~~tl~~ll~~l~~----~~~--------------~~v~vN~-~~v~~-~~~~~~~L~~gD~ 55 (65)
T PRK06944 1 MDIQL---NQQT--LSLPDGATVADALAAYGA----RPP--------------FAVAVNG-DFVAR-TQHAARALAAGDR 55 (65)
T ss_pred CEEEE---CCEE--EECCCCCcHHHHHHhhCC----CCC--------------eEEEECC-EEcCc-hhcccccCCCCCE
Confidence 55555 7776 455888999999876532 111 2345566 33321 2223444999999
Q ss_pred EEEEEecc
Q 040719 124 LQFSRHMS 131 (205)
Q Consensus 124 L~Fk~rl~ 131 (205)
|-|.+=+.
T Consensus 56 vei~~~v~ 63 (65)
T PRK06944 56 LDLVQPVA 63 (65)
T ss_pred EEEEeecc
Confidence 99887554
No 95
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=68.39 E-value=40 Score=23.92 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=40.9
Q ss_pred eEEEEEecCCcEEEEEeCCC-CcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIERN-ATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~s-ATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
|+|+| +|+.+ +++.+ .||.||=+.+ ...++. ..+-.+++-+- .....++-+++||
T Consensus 1 m~I~v---NG~~~--~~~~~~~tv~~lL~~l----~~~~~~-------------vav~vN~~iv~--r~~w~~~~L~~gD 56 (67)
T PRK07696 1 MNLKI---NGNQI--EVPESVKTVAELLTHL----ELDNKI-------------VVVERNKDILQ--KDDHTDTSVFDGD 56 (67)
T ss_pred CEEEE---CCEEE--EcCCCcccHHHHHHHc----CCCCCe-------------EEEEECCEEeC--HHHcCceecCCCC
Confidence 55655 78865 44665 6888886543 223332 45667774442 4556677799999
Q ss_pred EEEEEEecc
Q 040719 123 ELQFSRHMS 131 (205)
Q Consensus 123 ~L~Fk~rl~ 131 (205)
.|-++.-+.
T Consensus 57 ~iEIv~~Vg 65 (67)
T PRK07696 57 QIEIVTFVG 65 (67)
T ss_pred EEEEEEEec
Confidence 988876553
No 96
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=67.77 E-value=51 Score=24.96 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=52.3
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe--eCCeee--cCCcchhcccC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC--YDGRKL--VNDKTHIRDFR 117 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi--~~G~KL--ldD~ktLsdyG 117 (205)
+.-+|.|+.-+|+.+.-....+.|+.+|-..|... ...++. |.|+ |=-+.+ .+.+.||++.|
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~-g~~~~~-------------f~L~t~FPRr~~~~~d~~~TL~e~G 69 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQSK-GYPNER-------------FELLTNFPRRKLSHLDYDITLQEAG 69 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCC-------------EEEecCCCCcccCCcccCCCHHHcC
Confidence 45689999999999988888899999999988873 222221 2332 212222 24458999999
Q ss_pred CCCCCEEEEEEe
Q 040719 118 MKDGDELQFSRH 129 (205)
Q Consensus 118 IkDGd~L~Fk~r 129 (205)
+....+|.+-.|
T Consensus 70 L~P~~~LfVq~r 81 (82)
T cd01773 70 LCPQETVFVQER 81 (82)
T ss_pred CCCCcEEEEecC
Confidence 999998877544
No 97
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=66.65 E-value=28 Score=28.56 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhcc
Q 040719 56 FDVYIERNATVGELRQAIEEVFTL 79 (205)
Q Consensus 56 f~V~V~~sATV~DLKkAI~~~f~~ 79 (205)
=.|.|+.++|..+|=.+|+.+|.-
T Consensus 20 Rri~Vp~~~tl~~Lh~~Iq~afgw 43 (179)
T PF07929_consen 20 RRIEVPADITLADLHEVIQAAFGW 43 (179)
T ss_dssp EEEEEETT-BHHHHHHHHHHHTT-
T ss_pred EEEEECCCCCHHHHHHHHHHHhCc
Confidence 388999999999999999999953
No 98
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=66.14 E-value=36 Score=24.01 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=27.6
Q ss_pred EEEEecCCc----EEEEEeCCCCcHHHHHHHHHHHhcc
Q 040719 46 LSVLKLDGS----RFDVYIERNATVGELRQAIEEVFTL 79 (205)
Q Consensus 46 LtVrkldGs----~f~V~V~~sATV~DLKkAI~~~f~~ 79 (205)
|.|-..+++ .-.|.|+.++|+.|+=+++-++|..
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l 42 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGL 42 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 444456666 7788899999999999999999866
No 99
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=66.01 E-value=29 Score=24.01 Aligned_cols=61 Identities=20% Similarity=0.394 Sum_probs=39.4
Q ss_pred cCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEec
Q 040719 51 LDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHM 130 (205)
Q Consensus 51 ldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl 130 (205)
.+|+. ++++..+||.||.+.+. ..++ .+.+..+|+-+ . ...-.++-|++||+|.|..-+
T Consensus 4 iNg~~--~~~~~~~tv~~ll~~l~----~~~~-------------~i~V~vNg~~v-~-~~~~~~~~L~~gD~V~ii~~v 62 (65)
T cd00565 4 VNGEP--REVEEGATLAELLEELG----LDPR-------------GVAVALNGEIV-P-RSEWASTPLQDGDRIEIVTAV 62 (65)
T ss_pred ECCeE--EEcCCCCCHHHHHHHcC----CCCC-------------cEEEEECCEEc-C-HHHcCceecCCCCEEEEEEec
Confidence 46776 44578899999987764 1222 24556677443 2 333444669999999998766
Q ss_pred cc
Q 040719 131 SL 132 (205)
Q Consensus 131 ~~ 132 (205)
+.
T Consensus 63 ~G 64 (65)
T cd00565 63 GG 64 (65)
T ss_pred cC
Confidence 53
No 100
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=65.78 E-value=11 Score=32.39 Aligned_cols=41 Identities=12% Similarity=0.305 Sum_probs=25.2
Q ss_pred CCeEEEEEecCCcE---EEEEeCCCCcHHHHHHHHHHHhccCCC
Q 040719 42 PRIRLSVLKLDGSR---FDVYIERNATVGELRQAIEEVFTLSPT 82 (205)
Q Consensus 42 ~aMkLtVrkldGs~---f~V~V~~sATV~DLKkAI~~~f~~~pe 82 (205)
..|+|+....+... +.+.|+.++||.||-.++++++....+
T Consensus 19 k~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~ 62 (213)
T PF14533_consen 19 KQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEE 62 (213)
T ss_dssp --EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT
T ss_pred eEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcC
Confidence 47899997655433 788899999999999999999866433
No 101
>PRK06437 hypothetical protein; Provisional
Probab=65.25 E-value=47 Score=23.61 Aligned_cols=56 Identities=18% Similarity=0.305 Sum_probs=38.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEecc
Q 040719 53 GSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMS 131 (205)
Q Consensus 53 Gs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~ 131 (205)
+..-.++++..+||.||=+.+ ...++. +.+.-+|..+ . .++-+++||.|.+.+-++
T Consensus 10 ~~~~~~~i~~~~tv~dLL~~L----gi~~~~-------------vaV~vNg~iv-~-----~~~~L~dgD~Veiv~~V~ 65 (67)
T PRK06437 10 HINKTIEIDHELTVNDIIKDL----GLDEEE-------------YVVIVNGSPV-L-----EDHNVKKEDDVLILEVFS 65 (67)
T ss_pred CcceEEEcCCCCcHHHHHHHc----CCCCcc-------------EEEEECCEEC-C-----CceEcCCCCEEEEEeccc
Confidence 344667788899999986554 233332 4566677444 3 566799999999887654
No 102
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=64.61 E-value=44 Score=23.10 Aligned_cols=60 Identities=18% Similarity=0.447 Sum_probs=39.2
Q ss_pred cCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEec
Q 040719 51 LDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHM 130 (205)
Q Consensus 51 ldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl 130 (205)
.+|+.++ ++.++||.||.+.+. ..++ .+.+..+|+-+. ...-.++-+++||+|-+.+-+
T Consensus 3 iNg~~~~--~~~~~tv~~ll~~l~----~~~~-------------~v~v~vN~~iv~--~~~~~~~~L~~gD~veii~~V 61 (64)
T TIGR01683 3 VNGEPVE--VEDGLTLAALLESLG----LDPR-------------RVAVAVNGEIVP--RSEWDDTILKEGDRIEIVTFV 61 (64)
T ss_pred ECCeEEE--cCCCCcHHHHHHHcC----CCCC-------------eEEEEECCEEcC--HHHcCceecCCCCEEEEEEec
Confidence 4677644 588899999988653 2232 245566774442 333455679999999988765
Q ss_pred c
Q 040719 131 S 131 (205)
Q Consensus 131 ~ 131 (205)
.
T Consensus 62 ~ 62 (64)
T TIGR01683 62 G 62 (64)
T ss_pred c
Confidence 4
No 103
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=62.25 E-value=28 Score=29.21 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=38.2
Q ss_pred eEEEEEecCCcEEEEEeCC-CCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIER-NATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~-sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
||||| ......+-|-... +-||.+|=+.--..+.......+. +|-+| +-|-+.+-.|++.++.|.+- +-|.+
T Consensus 1 mkvtV-~fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~~~~--~~v~V---~~l~~~dggiLd~DD~l~dV-~dd~d 73 (145)
T PF12053_consen 1 MKVTV-CFGRTRVVVPCGDGQLTVRDLIQQALRRYRKAKEKDPD--YWVVV---HHLEYTDGGILDPDDVLCDV-VDDRD 73 (145)
T ss_dssp -EEEE-EETTEEEEEEESSS---HHHHHHHHHHHHHHHTT--TT--S-EEE---EEEE-SSS-EE-TTS-HHHH-S-TTE
T ss_pred CeEEE-EeCCeEEEEEeCCCCccHHHHHHHHhHhHHHhhccCCC--ceEEE---eeEEecCCceeccccceeEe-ccChh
Confidence 89999 4556665555544 589999964444433332322222 45444 23333333677777888776 44777
Q ss_pred EEEEEEec
Q 040719 123 ELQFSRHM 130 (205)
Q Consensus 123 ~L~Fk~rl 130 (205)
+|.-+-.-
T Consensus 74 ~liAvydE 81 (145)
T PF12053_consen 74 QLIAVYDE 81 (145)
T ss_dssp EEEEEEEE
T ss_pred hhheeecc
Confidence 76544443
No 104
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=61.60 E-value=37 Score=25.40 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=36.9
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYD 102 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~ 102 (205)
|+|.+ ..+|...-+.++.+.+..+|+..|.+.|+.... +.=.|+|..--+.+|++-+
T Consensus 1 ~~vK~-~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~-~~f~LkY~Ddegd~v~lts 57 (82)
T cd06407 1 VRVKA-TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDM-SAFDLKYLDDDEEWVLLTC 57 (82)
T ss_pred CEEEE-EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCC-CeeEEEEECCCCCeEEeec
Confidence 45666 556778888899999999999999999864321 2233444333333444433
No 105
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=60.93 E-value=27 Score=33.50 Aligned_cols=69 Identities=16% Similarity=0.317 Sum_probs=53.5
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe--eCCeeecCCcchhcccCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC--YDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi--~~G~KLldD~ktLsdyGIk 119 (205)
+.-.|-|+..||+.+-.....+-||.|++..|...-.-.+.. .|.|+ |=.+.|.+++.||++.|+.
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~------------~F~L~~~FPpk~l~D~sqTle~AgL~ 371 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSST------------YFILMMAFPPKPLSDDSQTLEEAGLL 371 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCC------------ceeeeecCCCcccCCcchhHHhccch
Confidence 567899999999998777888899999999999874322221 23443 3557888999999999999
Q ss_pred CCC
Q 040719 120 DGD 122 (205)
Q Consensus 120 DGd 122 (205)
|--
T Consensus 372 Nsv 374 (380)
T KOG2086|consen 372 NSV 374 (380)
T ss_pred hhh
Confidence 854
No 106
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=59.81 E-value=58 Score=22.87 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=27.6
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLS 80 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~ 80 (205)
++|.+.-.++....+.++.+.|..+|+..|...|...
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~ 38 (84)
T PF00564_consen 2 VRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLL 38 (84)
T ss_dssp EEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTS
T ss_pred EEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4566633433333488999999999999999999665
No 107
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=58.62 E-value=9.1 Score=28.82 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHHHH-hccCCCCCCCcccccccccceEEeeCCee---ecCCcchhcccCCCCCCEEEEEEecc
Q 040719 62 RNATVGELRQAIEEV-FTLSPTEGQGKISWTNVWGHFCLCYDGRK---LVNDKTHIRDFRMKDGDELQFSRHMS 131 (205)
Q Consensus 62 ~sATV~DLKkAI~~~-f~~~pe~g~qkISW~~VWk~fcLi~~G~K---LldD~ktLsdyGIkDGd~L~Fk~rl~ 131 (205)
..+|+.+|-+.|-+. +. +.+ .-|+. .--++|+..- =....++|+++||++|..|++..-..
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg-~~~---P~v~~-----~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~q 71 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLG-MNE---PDVSV-----GGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFDQ 71 (87)
T ss_dssp TT-BHHHHHHHCCCCCS---SS---EEEEE-----S-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETTT
T ss_pred hhCcHHHHHHHHHHhccC-CCC---CEEEe-----CCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcCC
Confidence 358999887765442 21 111 01111 1235554422 23457899999999999998865443
No 108
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=57.81 E-value=59 Score=22.28 Aligned_cols=64 Identities=11% Similarity=0.264 Sum_probs=38.9
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+| +|+. ++++...||.||=.+. ...++. ..+..+|+-+ . ...-.++=+++||.
T Consensus 1 m~i~v---NG~~--~~~~~~~tl~~lL~~l----~~~~~~-------------vav~vNg~iv-~-r~~~~~~~l~~gD~ 56 (66)
T PRK05659 1 MNIQL---NGEP--RELPDGESVAALLARE----GLAGRR-------------VAVEVNGEIV-P-RSQHASTALREGDV 56 (66)
T ss_pred CEEEE---CCeE--EEcCCCCCHHHHHHhc----CCCCCe-------------EEEEECCeEe-C-HHHcCcccCCCCCE
Confidence 55555 7886 4568889988876543 222322 3455666333 2 23344556999999
Q ss_pred EEEEEecc
Q 040719 124 LQFSRHMS 131 (205)
Q Consensus 124 L~Fk~rl~ 131 (205)
|-+..-+.
T Consensus 57 vei~~~vg 64 (66)
T PRK05659 57 VEIVHALG 64 (66)
T ss_pred EEEEEEec
Confidence 88876543
No 109
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=56.98 E-value=18 Score=26.80 Aligned_cols=57 Identities=28% Similarity=0.221 Sum_probs=33.3
Q ss_pred CCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEeccc
Q 040719 63 NATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSL 132 (205)
Q Consensus 63 sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~~ 132 (205)
.+||.+|.+.+.+.+......... ..+......+.+. +. ++-|++||+|.|.+.++.
T Consensus 27 ~~tv~~L~~~l~~~~~~~~~~~~~--------~~~v~~~~~~~~~-~~----~t~L~dGDeVa~~PPVsG 83 (84)
T COG1977 27 GATVGELEELLPKEGERWLLALED--------NIVVNAANNEFLV-GL----DTPLKDGDEVAFFPPVSG 83 (84)
T ss_pred HHHHHHHHHHHHhhhhhHHhccCc--------cceEEeeeceeec-cc----cccCCCCCEEEEeCCCCC
Confidence 589999998887765322221100 0122233333443 22 345999999999998875
No 110
>PRK01777 hypothetical protein; Validated
Probab=55.35 E-value=47 Score=25.60 Aligned_cols=78 Identities=21% Similarity=0.183 Sum_probs=45.5
Q ss_pred CeEEEEEec-CCcE--EEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC
Q 040719 43 RIRLSVLKL-DGSR--FDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 43 aMkLtVrkl-dGs~--f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk 119 (205)
.|+|+|.-. +... +.++|+.++||.|+=++..=. ...|+ |.| +.....+|+- .... ++-++
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~sgi~-~~~pe-----i~~---~~~~vgI~Gk-~v~~------d~~L~ 66 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRASGLL-ELRTD-----IDL---AKNKVGIYSR-PAKL------TDVLR 66 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHcCCC-ccCcc-----ccc---ccceEEEeCe-ECCC------CCcCC
Confidence 577777653 3322 578889999999865544211 11222 111 1122344433 3211 45699
Q ss_pred CCCEEEEEEeccccccc
Q 040719 120 DGDELQFSRHMSLDYLH 136 (205)
Q Consensus 120 DGd~L~Fk~rl~~~~~~ 136 (205)
+||.|-+-+=|..+---
T Consensus 67 dGDRVeIyrPL~~DPk~ 83 (95)
T PRK01777 67 DGDRVEIYRPLLADPKE 83 (95)
T ss_pred CCCEEEEecCCCCCHHH
Confidence 99999999999887653
No 111
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=54.97 E-value=47 Score=26.08 Aligned_cols=45 Identities=20% Similarity=0.393 Sum_probs=33.0
Q ss_pred EEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcc
Q 040719 58 VYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRD 115 (205)
Q Consensus 58 V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsd 115 (205)
.-||.+.||++|...|.+.....++. .+.|..++ .|...+.++.+
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~------------alfl~Vn~-~lp~~s~tm~e 81 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQ------------ALFLFVNN-TLPSTSSTMGE 81 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-------------EEEEBTT-BESSTTSBHHH
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCc------------eEEEEEcC-cccchhhHHHH
Confidence 45799999999999999998766653 35566666 77777777765
No 112
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=54.68 E-value=69 Score=23.63 Aligned_cols=69 Identities=20% Similarity=0.227 Sum_probs=41.0
Q ss_pred eEEEEEecCCcE---EEEEeCCCCcHHHHHHHHHHHh-ccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC
Q 040719 44 IRLSVLKLDGSR---FDVYIERNATVGELRQAIEEVF-TLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 44 MkLtVrkldGs~---f~V~V~~sATV~DLKkAI~~~f-~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk 119 (205)
|+|+-++..+.. =++.++..+||.|+=.+|...+ ...... .||+.= .-+.|+++-. ++-++
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A--------~v~g~s-~~~~gq~Vgl------~~~L~ 66 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYA--------LVWGSS-VKHSPQRVGL------DHVLE 66 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCee--------EEeccC-CcCCCeECCC------CCEec
Confidence 566664433322 3788899999999999999754 111111 244311 1246666532 35688
Q ss_pred CCCEEEEE
Q 040719 120 DGDELQFS 127 (205)
Q Consensus 120 DGd~L~Fk 127 (205)
|||.|.+.
T Consensus 67 d~DvVeI~ 74 (75)
T cd01666 67 DEDVVQIV 74 (75)
T ss_pred CCCEEEEe
Confidence 99988764
No 113
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=54.05 E-value=60 Score=22.60 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=27.1
Q ss_pred EEEEEecCCcEEEEEeC-CCCcHHHHHHHHHHHhccCC
Q 040719 45 RLSVLKLDGSRFDVYIE-RNATVGELRQAIEEVFTLSP 81 (205)
Q Consensus 45 kLtVrkldGs~f~V~V~-~sATV~DLKkAI~~~f~~~p 81 (205)
+|.+ ..+|....+.++ .++|..+|+..|...|....
T Consensus 2 ~vK~-~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~ 38 (81)
T cd05992 2 RVKV-KYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDA 38 (81)
T ss_pred cEEE-EecCCCEEEEEecCCCCHHHHHHHHHHHhCCCC
Confidence 3444 334666677777 89999999999999996543
No 114
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.98 E-value=1.1e+02 Score=24.38 Aligned_cols=62 Identities=26% Similarity=0.288 Sum_probs=37.6
Q ss_pred CCCcHHHHHHHHHHHhccCCCCCCCcccc-cccccceEEeeCCeeecCCcchhc--ccCCCCCCEEEEEEec
Q 040719 62 RNATVGELRQAIEEVFTLSPTEGQGKISW-TNVWGHFCLCYDGRKLVNDKTHIR--DFRMKDGDELQFSRHM 130 (205)
Q Consensus 62 ~sATV~DLKkAI~~~f~~~pe~g~qkISW-~~VWk~fcLi~~G~KLldD~ktLs--dyGIkDGd~L~Fk~rl 130 (205)
..+||.+|=.-|...+-..+.. -+|-- .-+.+..||+.+- |-..|. +|.+++||.|.|+.-+
T Consensus 34 ~~~tvgdll~yi~~~~ie~r~~--lFi~~gsvrpGii~lINd~-----DWEllekedy~ledgD~ivfiSTl 98 (101)
T KOG4146|consen 34 SPATVGDLLDYIFGKYIETRDS--LFIHHGSVRPGIIVLINDM-----DWELLEKEDYPLEDGDHIVFISTL 98 (101)
T ss_pred CcccHHHHHHHHHHHHhcCCcc--eEeeCCcCcCcEEEEEecc-----chhhhcccccCcccCCEEEEEEec
Confidence 3599999988888765222210 00000 1134566777654 334443 7999999999998755
No 115
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.69 E-value=20 Score=32.23 Aligned_cols=73 Identities=18% Similarity=0.383 Sum_probs=52.7
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
.++.+ +..++.|-+.++.-.||.|+|.+.+.+-...+- -|+ ..|+| +++.|+..|...+|..|..
T Consensus 148 lk~rl-TtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~--sQr-----------if~Sg-~~l~dkt~LeEc~iekg~r 212 (231)
T KOG0013|consen 148 LKLRL-TTTREDFWLTAPHYDTVGEIKRALRAAEGVDPL--SQR-----------IFFSG-GVLVDKTDLEECKIEKGQR 212 (231)
T ss_pred hHHHh-hhhhhheeecccCcCcHHHHHHHHHHhhccchh--hhe-----------eeccC-CceeccccceeeeecCCCE
Confidence 44444 335777888888899999999999998543321 121 45677 7778999999999999987
Q ss_pred EEEEEecc
Q 040719 124 LQFSRHMS 131 (205)
Q Consensus 124 L~Fk~rl~ 131 (205)
-.|-.+|.
T Consensus 213 YvlqviVl 220 (231)
T KOG0013|consen 213 YVLQVIVL 220 (231)
T ss_pred EEEEEEec
Confidence 66655554
No 116
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=51.49 E-value=81 Score=22.73 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=24.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhccC
Q 040719 53 GSRFDVYIERNATVGELRQAIEEVFTLS 80 (205)
Q Consensus 53 Gs~f~V~V~~sATV~DLKkAI~~~f~~~ 80 (205)
+....|.|..++|+.|+=+++.++|...
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~ 42 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLT 42 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 6778899999999999999999998543
No 117
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=50.83 E-value=92 Score=22.67 Aligned_cols=64 Identities=22% Similarity=0.460 Sum_probs=41.3
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|.+ +|+. ++++...||+||=..+. ..++. +.+..+|+-+ . ...-.++-+++||.
T Consensus 3 m~i~~---ng~~--~e~~~~~tv~dLL~~l~----~~~~~-------------vav~vNg~iV-p-r~~~~~~~l~~gD~ 58 (68)
T COG2104 3 MTIQL---NGKE--VEIAEGTTVADLLAQLG----LNPEG-------------VAVAVNGEIV-P-RSQWADTILKEGDR 58 (68)
T ss_pred EEEEE---CCEE--EEcCCCCcHHHHHHHhC----CCCce-------------EEEEECCEEc-c-chhhhhccccCCCE
Confidence 44444 5776 55677789999865432 23332 6777888554 3 33445667999999
Q ss_pred EEEEEecc
Q 040719 124 LQFSRHMS 131 (205)
Q Consensus 124 L~Fk~rl~ 131 (205)
|.++.-+.
T Consensus 59 ievv~~v~ 66 (68)
T COG2104 59 IEVVRVVG 66 (68)
T ss_pred EEEEEeec
Confidence 98887654
No 118
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=49.76 E-value=1.1e+02 Score=23.02 Aligned_cols=65 Identities=8% Similarity=0.295 Sum_probs=43.0
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
.|+|+| +|+.+. ++.+.||.+|=+.+ ...+.. ..+-.+|+-+ ..+...++-+++||
T Consensus 18 ~m~I~V---NG~~~~--~~~~~tl~~LL~~l----~~~~~~-------------vAVevNg~iV--pr~~w~~t~L~egD 73 (84)
T PRK06083 18 LITISI---NDQSIQ--VDISSSLAQIIAQL----SLPELG-------------CVFAINNQVV--PRSEWQSTVLSSGD 73 (84)
T ss_pred eEEEEE---CCeEEE--cCCCCcHHHHHHHc----CCCCce-------------EEEEECCEEe--CHHHcCcccCCCCC
Confidence 355655 888755 47788998886643 333332 4566777544 35667777899999
Q ss_pred EEEEEEecc
Q 040719 123 ELQFSRHMS 131 (205)
Q Consensus 123 ~L~Fk~rl~ 131 (205)
.|-++.-+.
T Consensus 74 ~IEIv~~Vg 82 (84)
T PRK06083 74 AISLFQAIA 82 (84)
T ss_pred EEEEEEEec
Confidence 988876543
No 119
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=49.02 E-value=63 Score=24.84 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=41.9
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG 103 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G 103 (205)
.|+|.|. ..|..+-+.|+.+.+..||...|...|... ++=.|.|+.= +.+|.+.+.
T Consensus 2 ~ikVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~---~~~~iKykDE-GD~iti~sq 57 (86)
T cd06408 2 KIRVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFGFK---RRLKIKMKDD-GDMITMGDQ 57 (86)
T ss_pred cEEEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC---CceEEEEEcC-CCCccccCH
Confidence 4677774 567788899999999999999999999653 2345667665 666665554
No 120
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=48.54 E-value=22 Score=31.26 Aligned_cols=63 Identities=29% Similarity=0.426 Sum_probs=42.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCe-----eecCCcchhcccCCCCCCEEEEEEecc
Q 040719 57 DVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGR-----KLVNDKTHIRDFRMKDGDELQFSRHMS 131 (205)
Q Consensus 57 ~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~-----KLldD~ktLsdyGIkDGd~L~Fk~rl~ 131 (205)
.+.|+.+++|.+|=..|.+....++... .++|+.. ..++.+.++....|.+||.|.|-+..+
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~-------------l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~ 154 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTP-------------LLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPS 154 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT---------------EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--G
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCc-------------eEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccc
Confidence 6788999999999999999877665431 3455432 224788999999999999999999776
Q ss_pred c
Q 040719 132 L 132 (205)
Q Consensus 132 ~ 132 (205)
.
T Consensus 155 ~ 155 (249)
T PF12436_consen 155 E 155 (249)
T ss_dssp G
T ss_pred c
Confidence 4
No 121
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=47.25 E-value=1e+02 Score=21.97 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhccC
Q 040719 53 GSRFDVYIERNATVGELRQAIEEVFTLS 80 (205)
Q Consensus 53 Gs~f~V~V~~sATV~DLKkAI~~~f~~~ 80 (205)
+..-.|.|+.++|..|+=+++.++|...
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 6777899999999999999999998543
No 122
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=46.29 E-value=49 Score=29.34 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=28.7
Q ss_pred CCCeEEEEEecCC-------cEEEEEeCCCCcHHHHHHHHHHH
Q 040719 41 QPRIRLSVLKLDG-------SRFDVYIERNATVGELRQAIEEV 76 (205)
Q Consensus 41 ~~aMkLtVrkldG-------s~f~V~V~~sATV~DLKkAI~~~ 76 (205)
+..|+|.|.+-++ ++|.|++.+..||.|+=..|...
T Consensus 3 ~~~~~~~i~R~~~~~~~~~~q~y~v~~~~~~tvLdaL~~I~~~ 45 (249)
T PRK08640 3 EKTVRLIIKRQDGPDSKPYWEEFEIPYRPNMNVISALMEIRRN 45 (249)
T ss_pred CcEEEEEEEeeCCCCCCceeEEEEecCCCCCcHHHHHHHHHhc
Confidence 3467888887763 34788888999999999999775
No 123
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=45.83 E-value=74 Score=24.15 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=34.8
Q ss_pred eCCCCcHHHHHHHHHHHhccC-----CCCCCCcccccccccceEEeeCCeeecCCcchh--cccCCCCCCEEEEEEecc
Q 040719 60 IERNATVGELRQAIEEVFTLS-----PTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHI--RDFRMKDGDELQFSRHMS 131 (205)
Q Consensus 60 V~~sATV~DLKkAI~~~f~~~-----pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktL--sdyGIkDGd~L~Fk~rl~ 131 (205)
+...+||.||=+.+...+... .+.+. -+.+.+++-+ ..|-..| -++-+++||+|.|.+=++
T Consensus 25 ~~~~~tV~dll~~L~~~~~~~~~~lf~~~g~--------lr~~i~VlvN---~~di~~l~g~~t~L~dgD~v~i~P~v~ 92 (94)
T cd01764 25 GEKPVTVGDLLDYVASNLLEERPDLFIEGGS--------VRPGIIVLIN---DTDWELLGEEDYILEDGDHVVFISTLH 92 (94)
T ss_pred CCCCCcHHHHHHHHHHhCchhhhhhEecCCc--------ccCCEEEEEC---CccccccCCcccCCCCcCEEEEECCCC
Confidence 335789999999998876211 11110 0123333322 0222334 256799999999987554
No 124
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=43.89 E-value=12 Score=26.96 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=11.8
Q ss_pred cchhcccCCCCCCEEEE
Q 040719 110 KTHIRDFRMKDGDELQF 126 (205)
Q Consensus 110 ~ktLsdyGIkDGd~L~F 126 (205)
.+.|...|+++||+|.+
T Consensus 46 ~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHHTTT--TT-EEEE
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 57899999999999864
No 125
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=43.86 E-value=96 Score=21.41 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=36.7
Q ss_pred EEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEE
Q 040719 47 SVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQF 126 (205)
Q Consensus 47 tVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~F 126 (205)
+|..-||+..+ ++..+|+.|+=+.|...+....- .-..+|+... - ++-|++||.|.|
T Consensus 2 ~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~---------------~A~Vng~~vd-l-----~~~L~~~d~v~i 58 (60)
T PF02824_consen 2 RVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRAV---------------AAKVNGQLVD-L-----DHPLEDGDVVEI 58 (60)
T ss_dssp EEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCEE---------------EEEETTEEEE-T-----TSBB-SSEEEEE
T ss_pred EEECCCCCeee--CCCCCCHHHHHHHHCHHHHhhee---------------EEEEcCEECC-C-----CCCcCCCCEEEE
Confidence 45557888755 68999999999999987632111 1123443332 1 345888888887
Q ss_pred E
Q 040719 127 S 127 (205)
Q Consensus 127 k 127 (205)
.
T Consensus 59 i 59 (60)
T PF02824_consen 59 I 59 (60)
T ss_dssp E
T ss_pred E
Confidence 5
No 126
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=43.37 E-value=1.1e+02 Score=23.47 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=50.5
Q ss_pred eEEEEEecCCcEEEE-EeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 44 IRLSVLKLDGSRFDV-YIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 44 MkLtVrkldGs~f~V-~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
.+|+.-+.....|.| .||++|-....=+-..+.|+.++... -++..+|..+ +-..+-.+.-+|-|.
T Consensus 5 FkitltSdp~lpfkvlsVpE~aPftAvlkfaAEeFkv~~~Ts------------AiiTndGvGI-NP~qtAGnvflkhgs 71 (82)
T cd01766 5 FKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATS------------AIITNDGIGI-NPAQTAGNVFLKHGS 71 (82)
T ss_pred EEEEecCCCCCcceEEeccccCchHHHHHHHHHhcCCCccce------------eEEecCcccc-ChhhcccceeeecCC
Confidence 566665566666644 58888877666666667776665531 2667778776 456666777788899
Q ss_pred EEEEEEec
Q 040719 123 ELQFSRHM 130 (205)
Q Consensus 123 ~L~Fk~rl 130 (205)
+|.+++|=
T Consensus 72 elrliPRD 79 (82)
T cd01766 72 ELRLIPRD 79 (82)
T ss_pred Eeeecccc
Confidence 88888763
No 127
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=43.32 E-value=26 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=18.1
Q ss_pred eEEEEEecCCcEEEEEe---CCCCcHHH
Q 040719 44 IRLSVLKLDGSRFDVYI---ERNATVGE 68 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V---~~sATV~D 68 (205)
|.|++++.||..|.|.. ..+.|+.+
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ 28 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKN 28 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHH
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHH
Confidence 78999999999999873 44555544
No 128
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=43.24 E-value=38 Score=25.63 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=38.3
Q ss_pred EEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCe-ee-----cCCcchhcccCCCCCCEEEEEE
Q 040719 58 VYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGR-KL-----VNDKTHIRDFRMKDGDELQFSR 128 (205)
Q Consensus 58 V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~-KL-----ldD~ktLsdyGIkDGd~L~Fk~ 128 (205)
|+|+.++|+.||=..+.......-.. -.|+ . .+--|...+- .| -+-.++|.+. +.+|++|++-.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~--PSlt--~--~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKK--PSLT--T--ANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS---EEE--S--SEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCC--Cccc--C--CCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 67899999999999998873221110 0000 0 0112333221 11 1557899999 99999998854
No 129
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=42.57 E-value=1.1e+02 Score=23.55 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=32.0
Q ss_pred EEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCC
Q 040719 45 RLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPT 82 (205)
Q Consensus 45 kLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe 82 (205)
-|.|-..||++..|.|+...|+.|+=+.+..+......
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~ 41 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDD 41 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCC
Confidence 46677899999999999999999999999888654444
No 130
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=41.27 E-value=41 Score=25.24 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhccCC
Q 040719 56 FDVYIERNATVGELRQAIEEVFTLSP 81 (205)
Q Consensus 56 f~V~V~~sATV~DLKkAI~~~f~~~p 81 (205)
+++.|+.+||+.++|+.+=+....+|
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~P 27 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYP 27 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGST
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCC
Confidence 46888999999999998777655444
No 131
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=41.08 E-value=51 Score=25.09 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=24.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhccCCCCC
Q 040719 56 FDVYIERNATVGELRQAIEEVFTLSPTEG 84 (205)
Q Consensus 56 f~V~V~~sATV~DLKkAI~~~f~~~pe~g 84 (205)
+.|.|+..++..+|...|.+++.++++.+
T Consensus 9 Vai~v~~g~~y~~L~~~ls~kL~l~~~~~ 37 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQALPQQAQRG 37 (78)
T ss_pred EEEEccCCCCHHHHHHHHHHHhcCChhhc
Confidence 45667999999999999999998887753
No 132
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=41.03 E-value=17 Score=26.37 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.5
Q ss_pred cchhcccCCCCCCEEEEE
Q 040719 110 KTHIRDFRMKDGDELQFS 127 (205)
Q Consensus 110 ~ktLsdyGIkDGd~L~Fk 127 (205)
.+.|...|+++||+|.+-
T Consensus 46 ~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHcCCCCCCEEEEc
Confidence 578999999999998753
No 133
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=40.53 E-value=96 Score=23.42 Aligned_cols=67 Identities=24% Similarity=0.360 Sum_probs=38.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe-eCCeeecCCcchhcccCCCCCCEEEEEEe
Q 040719 52 DGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC-YDGRKLVNDKTHIRDFRMKDGDELQFSRH 129 (205)
Q Consensus 52 dGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi-~~G~KLldD~ktLsdyGIkDGd~L~Fk~r 129 (205)
+|+..+|+-..+|. |--+++.++......|+--=+| -|- -+| -+++-++++.|||+.+|-+|.+.-+
T Consensus 4 NGqPv~VEANvnaP---Lh~v~akALe~sgNvgQP~ENW-------ElkDe~G-~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAP---LHPVRAKALEQSGNVGQPPENW-------ELKDESG-QVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCc---chHHHHHHHhhccccCCCcccc-------eeeccCC-cEeeccchhhhccccccceEEEEee
Confidence 56766666555554 3334444443222222222234 222 245 4557889999999999998876543
No 134
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=39.27 E-value=27 Score=27.60 Aligned_cols=29 Identities=7% Similarity=0.375 Sum_probs=22.7
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHH
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAI 73 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI 73 (205)
|+|.| +.++..+.+++.+++|..+|.+++
T Consensus 1 mkI~i-~i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKI-TIGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEE-EETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEE-EECCEEEEEEECCCHHHHHHHHhC
Confidence 77888 566999999999998887776554
No 135
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=38.84 E-value=21 Score=27.78 Aligned_cols=38 Identities=18% Similarity=0.427 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcH---HHHHHHHHHHhccCCCCCCCcccccccccc
Q 040719 55 RFDVYIERNATV---GELRQAIEEVFTLSPTEGQGKISWTNVWGH 96 (205)
Q Consensus 55 ~f~V~V~~sATV---~DLKkAI~~~f~~~pe~g~qkISW~~VWk~ 96 (205)
.++|.+|.+... .++|..=.+.....+..| -|+|+|+-
T Consensus 5 ~m~V~~P~~~~~~~~~~i~a~Eka~a~eLq~~G----k~~~lWRv 45 (90)
T TIGR03221 5 RMDVNLPVDMPAEKAAAIKAREKAYAQELQREG----KWRHLWRV 45 (90)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHHHHHhCC----ceEEEEEe
Confidence 467888887554 444443333333334444 38888874
No 136
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=38.62 E-value=1.6e+02 Score=23.27 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=37.6
Q ss_pred EEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcc----cCCCCCCEEEEE
Q 040719 58 VYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRD----FRMKDGDELQFS 127 (205)
Q Consensus 58 V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsd----yGIkDGd~L~Fk 127 (205)
.-|+.+.||+++...|.+.....++. .+.|.-++ .+..-+.++.+ |+-.|| .|++.
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~------------slfl~Vn~-~~p~~~~~~~~lY~~~kd~DG-fLyl~ 104 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEK------------ALFLFVNN-SLPPTSATMSQLYEEHKDEDG-FLYMT 104 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccc------------eEEEEECC-ccCCchhHHHHHHHHhCCCCC-EEEEE
Confidence 35799999999999999988665554 23344444 56566667665 565555 46554
No 137
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=37.57 E-value=1e+02 Score=23.22 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=30.0
Q ss_pred cCCCCeEEEEEec-CCcEEEEEeCCCCcHHHHHHHHHHH
Q 040719 39 LPQPRIRLSVLKL-DGSRFDVYIERNATVGELRQAIEEV 76 (205)
Q Consensus 39 l~~~aMkLtVrkl-dGs~f~V~V~~sATV~DLKkAI~~~ 76 (205)
+....++|.|... ++..+.+.|+.+.|+.+|-..+-.+
T Consensus 12 ~~~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k 50 (106)
T PF00794_consen 12 LQNNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKK 50 (106)
T ss_dssp SSSSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHH
T ss_pred CCCCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHH
Confidence 5566899999888 5677999999999999998666665
No 138
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=37.49 E-value=76 Score=23.26 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=34.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEE
Q 040719 57 DVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFS 127 (205)
Q Consensus 57 ~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk 127 (205)
++.|+..+||.|+=..|..-+...-.. .-||+ ++..-. +|=+.|||.|+|+
T Consensus 25 ~~~l~~g~tv~d~a~~IH~d~~~~F~~-------A~v~~-------~~~vg~------d~~l~d~DVv~i~ 75 (76)
T cd04938 25 CVLVKKGTTVGDVARKIHGDLEKGFIE-------AVGGR-------RRLEGK------DVILGKNDILKFK 75 (76)
T ss_pred eEEEcCCCCHHHHHHHHhHHHHhccEE-------EEEcc-------CEEECC------CEEecCCCEEEEE
Confidence 788899999999999999765221110 02444 434321 5678999999886
No 139
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=33.68 E-value=59 Score=25.57 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=31.2
Q ss_pred CCCcc-ccCCCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 040719 33 TMPYL-KLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVF 77 (205)
Q Consensus 33 ~~s~~-al~~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f 77 (205)
-++|. .|+|..--+.|-..+|..|.|+||.+--+..-|++|++-.
T Consensus 24 i~syteslagkrem~iitf~ngatfqvevpgsqhi~sqkk~iermk 69 (102)
T PF01376_consen 24 IFSYTESLAGKREMVIITFKNGATFQVEVPGSQHIDSQKKAIERMK 69 (102)
T ss_dssp ESEEEEEESTTEEEEEEEETTS-EEEE--SSTTSTTTHHHHHHHHH
T ss_pred HHHHHHhhcCceeEEEEEecCCcEEEEecCCccchhhhHHHHHHHH
Confidence 35554 4566644455558899999999999999999999998864
No 140
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=33.16 E-value=1.9e+02 Score=27.37 Aligned_cols=68 Identities=15% Similarity=0.287 Sum_probs=45.8
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+| +|+. ++++.+.||.||=+.+ ...++. +.+..+|+-+ ......++-+++||.
T Consensus 1 M~I~V---NGk~--~el~e~~TL~dLL~~L----~i~~~~-------------VAVeVNgeIV--pr~~w~~t~LkeGD~ 56 (326)
T PRK11840 1 MRIRL---NGEP--RQVPAGLTIAALLAEL----GLAPKK-------------VAVERNLEIV--PRSEYGQVALEEGDE 56 (326)
T ss_pred CEEEE---CCEE--EecCCCCcHHHHHHHc----CCCCCe-------------EEEEECCEEC--CHHHcCccccCCCCE
Confidence 55555 7886 4457888999887643 233332 5677788554 244556677999999
Q ss_pred EEEEEecccccc
Q 040719 124 LQFSRHMSLDYL 135 (205)
Q Consensus 124 L~Fk~rl~~~~~ 135 (205)
|-++.-+...-.
T Consensus 57 IEII~~VgGGs~ 68 (326)
T PRK11840 57 LEIVHFVGGGSD 68 (326)
T ss_pred EEEEEEecCCCC
Confidence 998888877554
No 141
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=32.46 E-value=84 Score=27.63 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=28.7
Q ss_pred CCeEEEEEecCC---------cEEEEEeCCCCcHHHHHHHHHHH
Q 040719 42 PRIRLSVLKLDG---------SRFDVYIERNATVGELRQAIEEV 76 (205)
Q Consensus 42 ~aMkLtVrkldG---------s~f~V~V~~sATV~DLKkAI~~~ 76 (205)
..|+|.|.+-+. +.|.|++++..||.|+=..|...
T Consensus 3 ~~~~~~i~R~~p~~~~~~~~~~~y~v~~~~~~tvLdaL~~Ik~~ 46 (239)
T PRK13552 3 RTLTFNIFRYNPQDPGSKPHMVTYQLEETPGMTLFIALNRIREE 46 (239)
T ss_pred ceEEEEEEeeCCCCCCCCcceEEEEecCCCCCCHHHHHHHHHhc
Confidence 358899988763 33888888999999999999875
No 142
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=32.06 E-value=1.7e+02 Score=22.31 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=25.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhccCCCC
Q 040719 55 RFDVYIERNATVGELRQAIEEVFTLSPTE 83 (205)
Q Consensus 55 ~f~V~V~~sATV~DLKkAI~~~f~~~pe~ 83 (205)
.+-|.|+...+..+|...|.++++.+++.
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~ 40 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEH 40 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchh
Confidence 77888999999999999999999877654
No 143
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=29.25 E-value=2.2e+02 Score=20.95 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=18.6
Q ss_pred EEEeCCCCcHHHHHHHHHHHh
Q 040719 57 DVYIERNATVGELRQAIEEVF 77 (205)
Q Consensus 57 ~V~V~~sATV~DLKkAI~~~f 77 (205)
++.++..+||.|+=.+|+..+
T Consensus 24 ~~~l~~GaTv~D~A~~IHtdi 44 (76)
T cd01669 24 AFLLPKGSTARDLAYAIHTDI 44 (76)
T ss_pred eEEECCCCCHHHHHHHHHHHH
Confidence 677899999999999999876
No 144
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=28.92 E-value=1.5e+02 Score=30.69 Aligned_cols=60 Identities=20% Similarity=0.399 Sum_probs=41.6
Q ss_pred EEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEE--eeCCeeecCCcchhcccCCCCCC
Q 040719 45 RLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCL--CYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 45 kLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcL--i~~G~KLldD~ktLsdyGIkDGd 122 (205)
.|+|-+-+|.. +.+|..||+.|+=-+|+..+ |.+ |. -.+| ++.. -+|-+++||
T Consensus 405 ~V~VfTPkG~~--~~Lp~gaT~lDfAy~iHt~i------G~~-----------~~gAkvng-~~v~-----l~~~L~~GD 459 (743)
T PRK10872 405 RVYVFTPKGDV--VDLPAGSTPLDFAYHIHSDV------GHR-----------CIGAKIGG-RIVP-----FTYQLQMGD 459 (743)
T ss_pred eEEEECCCCCe--EEcCCCCcHHHHHHHHhHHH------Hhh-----------ceEEEECC-EECC-----CCcCCCCCC
Confidence 58888888885 66799999999988887765 222 11 1344 3322 356799999
Q ss_pred EEEEEEe
Q 040719 123 ELQFSRH 129 (205)
Q Consensus 123 ~L~Fk~r 129 (205)
+|-+..-
T Consensus 460 ~VeIits 466 (743)
T PRK10872 460 QIEIITQ 466 (743)
T ss_pred EEEEEeC
Confidence 9887753
No 145
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=28.71 E-value=19 Score=33.68 Aligned_cols=84 Identities=17% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCcEEEEEeCC-----CCcHHHHHHHHHHHhcc-C----CCCCC-CcccccccccceE-----EeeCCee
Q 040719 42 PRIRLSVLKLDGSRFDVYIER-----NATVGELRQAIEEVFTL-S----PTEGQ-GKISWTNVWGHFC-----LCYDGRK 105 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~-----sATV~DLKkAI~~~f~~-~----pe~g~-qkISW~~VWk~fc-----Li~~G~K 105 (205)
..|.|+++.+-+-.+.+.++. +.||.|||.+++..+.. + ..+.+ .+ +. |.|+.+.
T Consensus 77 ~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dK---------ik~~~~~lL~~kkP 147 (309)
T PF12754_consen 77 KSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDK---------IKNFRCRLLYKKKP 147 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHH---------hhhhhhhheecCcc
Confidence 468888888888777666532 58999999999996521 1 11110 11 23 6666655
Q ss_pred ecCCcchhcccCCC-------CCCEEEEEEecccccc
Q 040719 106 LVNDKTHIRDFRMK-------DGDELQFSRHMSLDYL 135 (205)
Q Consensus 106 LldD~ktLsdyGIk-------DGd~L~Fk~rl~~~~~ 135 (205)
+ -|.++|.+..=. .|.+|-|-.-+.....
T Consensus 148 v-~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa~ 183 (309)
T PF12754_consen 148 V-GDSKTLAEVLADSESRLLSGGKEVEFGVMVLGGAA 183 (309)
T ss_dssp -------------------------------------
T ss_pred C-CCcCcHHHHHhcccchhccCCceEEEEEEEECCcc
Confidence 5 788899887543 3666777776666555
No 146
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=27.49 E-value=1.9e+02 Score=28.87 Aligned_cols=73 Identities=21% Similarity=0.377 Sum_probs=47.9
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhc--cCCCCCCCcccccccccceEEeeCCeee---cCCcchhcccCC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFT--LSPTEGQGKISWTNVWGHFCLCYDGRKL---VNDKTHIRDFRM 118 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~--~~pe~g~qkISW~~VWk~fcLi~~G~KL---ldD~ktLsdyGI 118 (205)
|-+.++...|.. .|++..+.+.+-|-..+-.-|. +.|+. | +.|-..+|+.. +..+.|+.+.|+
T Consensus 1 Mi~rfRsk~G~~-Rve~qe~d~lg~l~~kll~~~~~n~~~e~----~-------svc~~p~~qG~~~s~l~dqt~~dlGL 68 (571)
T COG5100 1 MIFRFRSKEGQR-RVEVQESDVLGMLSPKLLAFFEVNYSPEQ----I-------SVCSAPDGQGEIFSLLKDQTPDDLGL 68 (571)
T ss_pred CeEEEecCCCce-eeeccccchhhhhhHHHHhhhccCCCccc----e-------EEEeCCCCCceeeecccccChhhhcc
Confidence 567777777765 6888888888877766666552 22331 1 12323344443 455789999999
Q ss_pred CCCCEEEEEE
Q 040719 119 KDGDELQFSR 128 (205)
Q Consensus 119 kDGd~L~Fk~ 128 (205)
+.|+.|++--
T Consensus 69 ~hGqmLyl~y 78 (571)
T COG5100 69 RHGQMLYLEY 78 (571)
T ss_pred ccCcEEEEEe
Confidence 9999887743
No 147
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=27.15 E-value=1.4e+02 Score=26.58 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=31.6
Q ss_pred eEEEEEecCC-------cEEEEE-eCCCCcHHHHHHHHHHHhccCCCCCCCcccccccc
Q 040719 44 IRLSVLKLDG-------SRFDVY-IERNATVGELRQAIEEVFTLSPTEGQGKISWTNVW 94 (205)
Q Consensus 44 MkLtVrkldG-------s~f~V~-V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VW 94 (205)
|+++|.+.++ +.|.|+ +.+..||.|+=..|.+......+ ..|+|++--
T Consensus 3 ~~~~i~R~~~~~~~~~~q~y~v~~~~~~~tvLd~L~~Ik~~~~~~~~---~~l~fr~sC 58 (250)
T PRK07570 3 LTLKIWRQKGPDDKGKFETYEVDDISPDMSFLEMLDVLNEQLIEKGE---EPVAFDHDC 58 (250)
T ss_pred EEEEEEecCCCCCCceeEEEEecCCCCCCcHHHHHHHHHHHhhccCC---CCeeEeccc
Confidence 5677877652 337787 67889999999999775421111 237776643
No 148
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=26.98 E-value=2.5e+02 Score=21.77 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=45.8
Q ss_pred EEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEE
Q 040719 45 RLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDEL 124 (205)
Q Consensus 45 kLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L 124 (205)
.|.|---||..+.|.|-.+.|..++=+++.++...+.+.. + -|||.--+ ..
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~-~---------YFaLFev~-------------------~~ 53 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQ-N---------YFALFEVI-------------------NH 53 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHH-h---------heeeeEEe-------------------cc
Confidence 4666667899999999889999999999999987666642 2 24554332 16
Q ss_pred EEEEeccccccc
Q 040719 125 QFSRHMSLDYLH 136 (205)
Q Consensus 125 ~Fk~rl~~~~~~ 136 (205)
.|++||+..-+|
T Consensus 54 ~f~RKL~dfE~P 65 (87)
T cd01777 54 SFVRKLAPNEFP 65 (87)
T ss_pred eEEEeccCccCC
Confidence 788888777666
No 149
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=26.58 E-value=84 Score=23.79 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=19.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhccC
Q 040719 56 FDVYIERNATVGELRQAIEEVFTLS 80 (205)
Q Consensus 56 f~V~V~~sATV~DLKkAI~~~f~~~ 80 (205)
+.+.|+.+||+.++|..+-+....+
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~~~ 26 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQARKM 26 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHHhC
Confidence 4678899999999998887765443
No 150
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=26.16 E-value=1.2e+02 Score=22.96 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhccCC
Q 040719 54 SRFDVYIERNATVGELRQAIEEVFTLSP 81 (205)
Q Consensus 54 s~f~V~V~~sATV~DLKkAI~~~f~~~p 81 (205)
..+.+.|+.+||=.|+|+||+..|....
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V 48 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKV 48 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCe
Confidence 4578889999999999999999996543
No 151
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=25.97 E-value=71 Score=25.38 Aligned_cols=33 Identities=12% Similarity=0.369 Sum_probs=23.1
Q ss_pred EEeeCCeeecCCcchhcccCCCCCCEEEEEEeccc
Q 040719 98 CLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSL 132 (205)
Q Consensus 98 cLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~~ 132 (205)
+|.|.|+.| ..+++|++| |.-++.-.++.+|..
T Consensus 3 ~LW~aGK~l-~~~k~l~dy-~GkNEKtKiivKl~~ 35 (98)
T PF11069_consen 3 QLWWAGKEL-QRGKKLSDY-IGKNEKTKIIVKLQK 35 (98)
T ss_pred eEEeccccc-cCCCcHHHh-cCCCcceeEEEEecc
Confidence 678999555 788999999 555555555555543
No 152
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=25.50 E-value=1.5e+02 Score=24.54 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=26.6
Q ss_pred CCCCeEEEEEecCCcEEEEEeCCCCcHHHH
Q 040719 40 PQPRIRLSVLKLDGSRFDVYIERNATVGEL 69 (205)
Q Consensus 40 ~~~aMkLtVrkldGs~f~V~V~~sATV~DL 69 (205)
+.+..+|+|...+|+...|+++...|+.|.
T Consensus 32 ~~g~v~I~~~~~dG~~~~v~~~~G~sLLea 61 (143)
T PTZ00490 32 TPGKVKVCVKKRDGTHCDVEVPVGMSLMHA 61 (143)
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCccHHHH
Confidence 367999999999999999999999998875
No 153
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=24.05 E-value=1.3e+02 Score=22.52 Aligned_cols=29 Identities=38% Similarity=0.613 Sum_probs=22.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhc-cCCCC
Q 040719 55 RFDVYIERNATVGELRQAIEEVFT-LSPTE 83 (205)
Q Consensus 55 ~f~V~V~~sATV~DLKkAI~~~f~-~~pe~ 83 (205)
+|=+-..++.|+.+|+..|.+.|. .||..
T Consensus 4 KFLhlt~~~~tl~~L~~eI~~~f~kLYP~~ 33 (73)
T PF10407_consen 4 KFLHLTDPNNTLSQLKEEIEERFKKLYPNE 33 (73)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHHHHCCCC
Confidence 444446789999999999999996 46654
No 154
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=23.99 E-value=2e+02 Score=29.27 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=42.7
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEE--eeCCeeecCCcchhcccCCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCL--CYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcL--i~~G~KLldD~ktLsdyGIkDG 121 (205)
=.|+|-+-+|.. +.+|..|||.|+=-+|...+ |.. |+ .-+|+ +.. -++-+++|
T Consensus 360 ~~i~vfTPkG~~--~~lp~gst~~DfAy~ih~~~------g~~-----------~~~a~vng~-~v~-----l~~~l~~g 414 (683)
T TIGR00691 360 EEIYVFTPKGDV--VELPSGSTPVDFAYAVHTDV------GNK-----------CTGAKVNGK-IVP-----LDKELENG 414 (683)
T ss_pred CceEEECCCCeE--EEcCCCCCHHHHHHHHhHHh------Hhc-----------eeEEEECCE-ECC-----CCccCCCC
Confidence 467888888887 55699999999988888665 221 22 12342 222 25679999
Q ss_pred CEEEEEEecc
Q 040719 122 DELQFSRHMS 131 (205)
Q Consensus 122 d~L~Fk~rl~ 131 (205)
|+|.++-.-.
T Consensus 415 d~vei~t~~~ 424 (683)
T TIGR00691 415 DVVEIITGKN 424 (683)
T ss_pred CEEEEEeCCC
Confidence 9998875443
No 155
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=23.92 E-value=87 Score=25.54 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=36.5
Q ss_pred EeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcc----cCCCCCCEEEEEEecc
Q 040719 59 YIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRD----FRMKDGDELQFSRHMS 131 (205)
Q Consensus 59 ~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsd----yGIkDGd~L~Fk~rl~ 131 (205)
-||.+.||+++...|.+.....++. +.|.-++ .|..-+.++.+ |.=.|| .|++.-.-.
T Consensus 46 lVP~d~tV~qF~~iIRkrl~l~~~k-------------~flfVnn-~lp~~s~~mg~lYe~~KDeDG-FLYi~Ys~e 107 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALGTSAKK-------------VTLAIEG-STPAVTATVGDIADACKRDDG-FLYVSVRTE 107 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcCCChhH-------------EEEEECC-ccCCccchHHHHHHHhcCCCC-eEEEEEccc
Confidence 5899999999999999998766663 1233344 55555566654 333333 366554333
No 156
>PRK12765 flagellar capping protein; Provisional
Probab=23.18 E-value=1.4e+02 Score=29.84 Aligned_cols=35 Identities=17% Similarity=0.404 Sum_probs=29.2
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHH
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEV 76 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~ 76 (205)
.+.++|++ ..+|..+.|.|+.+.|+.+|..+|-..
T Consensus 130 ~gt~tlti-~~~g~~~tI~i~~~~TL~dl~~aIN~a 164 (595)
T PRK12765 130 TGETDLTI-FSNGKEYTITVDKSTTYRDLADKINEA 164 (595)
T ss_pred CCceEEEE-EeCCEEEEEEECCCCCHHHHHHHHhcC
Confidence 45667777 557889999999999999999999764
No 157
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=23.00 E-value=1.3e+02 Score=23.57 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=25.6
Q ss_pred cCCcEEEEEeCCCCcHHHHHHHHHHHhccCC
Q 040719 51 LDGSRFDVYIERNATVGELRQAIEEVFTLSP 81 (205)
Q Consensus 51 ldGs~f~V~V~~sATV~DLKkAI~~~f~~~p 81 (205)
.+...+.+.|...||=.|+|+||++.|...+
T Consensus 19 ~~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV 49 (94)
T COG0089 19 EKENKYVFIVDPDATKPEIKAAVEELFGVKV 49 (94)
T ss_pred hhCCEEEEEECCCCCHHHHHHHHHHHhCCeE
Confidence 3445678889999999999999999996543
No 158
>CHL00030 rpl23 ribosomal protein L23
Probab=22.74 E-value=1.4e+02 Score=23.12 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=24.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhcc
Q 040719 53 GSRFDVYIERNATVGELRQAIEEVFTL 79 (205)
Q Consensus 53 Gs~f~V~V~~sATV~DLKkAI~~~f~~ 79 (205)
...+.+.|+.+||=.|.|+||+..|..
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~V 45 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGV 45 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 457889999999999999999999864
No 159
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=22.14 E-value=1.6e+02 Score=21.93 Aligned_cols=28 Identities=25% Similarity=0.655 Sum_probs=24.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhccCC
Q 040719 54 SRFDVYIERNATVGELRQAIEEVFTLSP 81 (205)
Q Consensus 54 s~f~V~V~~sATV~DLKkAI~~~f~~~p 81 (205)
..+.+.|+..||=.|.|+||+..|....
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV 42 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKV 42 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCce
Confidence 5688899999999999999999996543
No 160
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.28 E-value=4.2e+02 Score=21.02 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=22.9
Q ss_pred ccceEEeeCCeeecCCcchhcc--cCCCCCCEEEEEEec
Q 040719 94 WGHFCLCYDGRKLVNDKTHIRD--FRMKDGDELQFSRHM 130 (205)
Q Consensus 94 Wk~fcLi~~G~KLldD~ktLsd--yGIkDGd~L~Fk~rl 130 (205)
.+..||+.+- |...|.. |-+++||.+.|+.-+
T Consensus 60 pGiI~LINd~-----DWeLleke~y~ledgDiIvfistl 93 (96)
T COG5131 60 PGIICLINDM-----DWELLEKERYPLEDGDIIVFISTL 93 (96)
T ss_pred ccEEEEEcCc-----cHhhhhcccccCCCCCEEEEEecc
Confidence 3456666543 5566665 999999999998754
No 161
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=21.25 E-value=2.1e+02 Score=27.55 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=50.7
Q ss_pred CCeEEEEEecCCcE---EEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCC
Q 040719 42 PRIRLSVLKLDGSR---FDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRM 118 (205)
Q Consensus 42 ~aMkLtVrkldGs~---f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGI 118 (205)
+-++|+-+.-.+.. -|+.|...+||.|+=+.|++-|-.. +-...||+. ..-|.||+.=. +|=+
T Consensus 289 ~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~l~~~-------FryA~VWGk-Svk~~~QrVG~------dHvL 354 (365)
T COG1163 289 GLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKIHRDLVEN-------FRYARVWGK-SVKHPGQRVGL------DHVL 354 (365)
T ss_pred CeEEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHh-------cceEEEecc-CCCCCccccCc------CcCc
Confidence 45888885444433 3889999999999999999987321 112348887 66678877632 4567
Q ss_pred CCCCEEEEEE
Q 040719 119 KDGDELQFSR 128 (205)
Q Consensus 119 kDGd~L~Fk~ 128 (205)
.|+|.|....
T Consensus 355 eD~DIV~I~~ 364 (365)
T COG1163 355 EDEDIVEIHA 364 (365)
T ss_pred cCCCeEEEee
Confidence 8889887654
No 162
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=21.02 E-value=3.4e+02 Score=20.87 Aligned_cols=39 Identities=13% Similarity=-0.014 Sum_probs=29.3
Q ss_pred ccCCCCeEEEEEecC-CcEEEEEeCCCCcHHHHHHHHHHH
Q 040719 38 KLPQPRIRLSVLKLD-GSRFDVYIERNATVGELRQAIEEV 76 (205)
Q Consensus 38 al~~~aMkLtVrkld-Gs~f~V~V~~sATV~DLKkAI~~~ 76 (205)
++..+.+.|.|...+ ...+.+.|+.++|+.+|-+.+-.+
T Consensus 12 k~~~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k 51 (108)
T smart00144 12 KTIANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTK 51 (108)
T ss_pred cccCCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHH
Confidence 345567888886654 355889999999999998776665
No 163
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=20.75 E-value=2.7e+02 Score=21.71 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=33.0
Q ss_pred EEEEEeC---CCCcHHHHHHHHHHHhccCCCCCCCccc-ccccccceEEeeCCeeecCCcchhc--ccCCCCCCEEEEEE
Q 040719 55 RFDVYIE---RNATVGELRQAIEEVFTLSPTEGQGKIS-WTNVWGHFCLCYDGRKLVNDKTHIR--DFRMKDGDELQFSR 128 (205)
Q Consensus 55 ~f~V~V~---~sATV~DLKkAI~~~f~~~pe~g~qkIS-W~~VWk~fcLi~~G~KLldD~ktLs--dyGIkDGd~L~Fk~ 128 (205)
...|.++ ..+||.+|=.-|.... ..++..-++. ..=-.+-++|+.+- |..-+. +|-+++||.|.|+.
T Consensus 19 ~h~v~l~~~~~~~ti~~Li~~l~~nl--l~~r~elF~~~~~vrPGILvLINd~-----DwEl~g~~~y~l~~~D~I~FiS 91 (96)
T PF09138_consen 19 KHKVSLPSDGEPATIKDLIDYLRDNL--LKERPELFLEGGSVRPGILVLINDA-----DWELLGEEDYVLKDGDNITFIS 91 (96)
T ss_dssp EEEEEE-SSCSC-BHHHHHHHHCCCT---SSGHHHHBSSSSB-TTEEEEETTC-----EHHHHTCCCSB--TTEEEEEEE
T ss_pred eEEEEcCCCCCCcCHHHHHHHHHHhc--cCCCHhHEecCCeEcCcEEEEEcCc-----cceeecCcceEcCCCCEEEEEc
Confidence 3466666 6799999987776643 1111000000 00001223343332 333433 58999999999986
Q ss_pred ec
Q 040719 129 HM 130 (205)
Q Consensus 129 rl 130 (205)
-+
T Consensus 92 TL 93 (96)
T PF09138_consen 92 TL 93 (96)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 164
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=20.26 E-value=1.7e+02 Score=22.25 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=25.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhccCC
Q 040719 53 GSRFDVYIERNATVGELRQAIEEVFTLSP 81 (205)
Q Consensus 53 Gs~f~V~V~~sATV~DLKkAI~~~f~~~p 81 (205)
...+.+.|+.+||=.|.|+||+..|....
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV 48 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKV 48 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCce
Confidence 45788889999999999999999996543
Done!