Query 040719
Match_columns 205
No_of_seqs 113 out of 202
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 17:55:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2y_A 3300001G02RIK protein; 100.0 2.1E-29 7.1E-34 194.4 8.4 97 41-137 5-103 (105)
2 3phx_B Ubiquitin-like protein 99.6 2.4E-14 8.3E-19 100.7 10.9 76 42-131 3-78 (79)
3 3v6c_B Ubiquitin; structural g 99.6 2.4E-14 8.3E-19 104.0 10.3 77 41-131 15-91 (91)
4 3dbh_I NEDD8; cell cycle, acti 99.6 3.5E-14 1.2E-18 101.0 10.5 79 40-132 9-87 (88)
5 3mtn_B UBA80, ubcep1, ubiquiti 99.5 4.1E-14 1.4E-18 99.5 10.0 80 42-135 2-81 (85)
6 3n3k_B Ubiquitin; hydrolase, p 99.5 2.6E-14 8.8E-19 100.8 8.9 80 42-135 2-81 (85)
7 1ndd_A NEDD8, protein (ubiquit 99.5 5.6E-14 1.9E-18 96.5 10.0 75 44-132 1-75 (76)
8 3a9j_A Ubiquitin; protein comp 99.5 6.5E-14 2.2E-18 96.2 10.3 75 44-132 1-75 (76)
9 4fbj_B NEDD8; effector-HOST ta 99.5 4.1E-14 1.4E-18 102.9 9.2 80 44-137 1-80 (88)
10 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 6.6E-14 2.2E-18 101.7 10.2 80 43-136 1-80 (96)
11 4hcn_B Polyubiquitin, ubiquiti 99.5 4.5E-14 1.6E-18 104.4 9.2 79 40-132 19-97 (98)
12 2dzi_A Ubiquitin-like protein 99.5 7.5E-14 2.6E-18 97.6 9.6 76 41-130 5-80 (81)
13 2faz_A Ubiquitin-like containi 99.5 1E-13 3.6E-18 97.0 10.1 76 42-131 1-78 (78)
14 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 1.5E-13 5E-18 98.0 10.6 79 41-133 5-83 (87)
15 4eew_A Large proline-rich prot 99.5 1.1E-13 3.9E-18 99.2 9.7 74 41-129 15-88 (88)
16 4dwf_A HLA-B-associated transc 99.5 2.6E-13 8.9E-18 97.7 10.1 79 42-135 4-82 (90)
17 2bwf_A Ubiquitin-like protein 99.5 3.7E-13 1.3E-17 93.2 10.3 71 44-129 5-75 (77)
18 1sif_A Ubiquitin; hydrophobic 99.5 1.9E-13 6.6E-18 99.3 9.1 78 42-133 8-85 (88)
19 2kk8_A Uncharacterized protein 99.5 2.9E-13 9.8E-18 98.5 10.0 76 41-129 8-83 (84)
20 2wyq_A HHR23A, UV excision rep 99.5 4.7E-13 1.6E-17 94.8 10.7 76 42-131 4-82 (85)
21 1wy8_A NP95-like ring finger p 99.5 5.6E-13 1.9E-17 95.6 11.1 80 41-134 5-86 (89)
22 2ojr_A Ubiquitin; lanthide-bin 99.5 7.4E-13 2.5E-17 100.2 12.3 78 41-132 33-110 (111)
23 1uel_A HHR23B, UV excision rep 99.5 5.6E-13 1.9E-17 98.0 10.9 75 44-132 1-78 (95)
24 3rt3_B Ubiquitin-like protein 99.5 7.5E-13 2.6E-17 104.0 11.9 106 12-133 50-157 (159)
25 1wx8_A Riken cDNA 4931431F19; 99.4 3.2E-13 1.1E-17 98.7 8.8 78 41-133 15-92 (96)
26 1yx5_B Ubiquitin; proteasome, 99.4 6.3E-13 2.2E-17 97.7 10.2 76 44-133 1-76 (98)
27 2hj8_A Interferon-induced 17 k 99.4 3.5E-13 1.2E-17 97.7 8.7 78 42-133 3-80 (88)
28 3vdz_A Ubiquitin-40S ribosomal 99.4 7.2E-13 2.5E-17 100.7 10.5 77 42-132 34-110 (111)
29 2uyz_B Small ubiquitin-related 99.4 4.9E-13 1.7E-17 94.0 8.5 76 43-132 3-78 (79)
30 2klc_A Ubiquilin-1; ubiquitin- 99.4 1.3E-12 4.5E-17 97.7 10.8 86 32-132 13-99 (101)
31 3m62_B UV excision repair prot 99.4 4.9E-13 1.7E-17 100.9 7.4 75 44-132 2-76 (106)
32 1ttn_A DC-UBP, dendritic cell- 99.4 1.7E-12 5.9E-17 97.5 9.9 79 41-133 21-99 (106)
33 3b1l_X E3 ubiquitin-protein li 99.1 2.7E-14 9.3E-19 99.3 0.0 75 44-132 1-75 (76)
34 1wyw_B Ubiquitin-like protein 99.4 1.3E-12 4.6E-17 96.7 9.0 78 41-132 19-96 (97)
35 3b08_A Polyubiquitin-C, ubiqui 99.4 3.9E-12 1.3E-16 97.6 11.8 78 41-132 74-151 (152)
36 1wgd_A Homocysteine-responsive 99.4 1.4E-12 4.8E-17 95.2 8.6 78 42-133 6-89 (93)
37 1yqb_A Ubiquilin 3; structural 99.4 2E-12 6.9E-17 96.7 9.6 78 41-133 20-97 (100)
38 2daf_A FLJ35834 protein; hypot 99.4 2.7E-12 9.2E-17 101.6 10.7 83 39-135 11-94 (118)
39 2kan_A Uncharacterized protein 99.4 3.2E-12 1.1E-16 94.7 10.1 77 42-133 14-91 (94)
40 1v5o_A 1700011N24RIK protein; 99.4 2E-12 7E-17 96.5 8.8 81 43-136 7-91 (102)
41 2l7r_A Ubiquitin-like protein 99.4 2.2E-12 7.6E-17 94.9 8.4 76 41-132 17-92 (93)
42 1j8c_A Ubiquitin-like protein 99.4 8.3E-12 2.8E-16 97.3 12.2 79 41-134 30-108 (125)
43 1uh6_A Ubiquitin-like 5; beta- 99.4 1.8E-12 6.3E-17 99.3 8.2 71 43-127 28-98 (100)
44 1wia_A Hypothetical ubiquitin- 99.4 2.7E-12 9.1E-17 93.8 8.5 76 41-133 5-81 (95)
45 1wx7_A Ubiquilin 3; ubiquitin- 99.4 3.5E-12 1.2E-16 95.4 9.3 79 42-135 16-94 (106)
46 4a20_A Ubiquitin-like protein 99.4 3.6E-12 1.2E-16 96.3 9.4 76 40-129 16-95 (98)
47 1x1m_A Ubiquitin-like protein 99.3 4.7E-12 1.6E-16 95.4 9.4 83 37-132 6-102 (107)
48 2kdi_A Ubiquitin, vacuolar pro 99.3 8.8E-12 3E-16 95.4 10.7 81 41-135 7-87 (114)
49 1we6_A Splicing factor, putati 99.3 4.1E-12 1.4E-16 96.0 8.5 79 41-133 25-107 (111)
50 3l0w_B Monoubiquitinated proli 99.3 8.5E-12 2.9E-16 101.6 10.8 76 44-133 1-76 (169)
51 3b08_A Polyubiquitin-C, ubiqui 99.3 9.8E-12 3.4E-16 95.4 10.2 76 44-133 1-76 (152)
52 3u30_A Ubiquitin, linear DI-ub 99.3 1.4E-11 4.9E-16 98.4 10.9 86 36-135 13-98 (172)
53 1wxv_A BAG-family molecular ch 99.3 1.5E-11 5E-16 89.4 9.8 77 42-132 6-87 (92)
54 3u30_A Ubiquitin, linear DI-ub 99.3 1.2E-11 4.1E-16 98.8 9.8 102 15-132 69-171 (172)
55 1wju_A NEDD8 ultimate buster-1 99.3 1.1E-11 3.7E-16 95.0 8.3 72 45-131 17-92 (100)
56 3u5c_f 40S ribosomal protein S 99.3 4.8E-13 1.6E-17 108.3 0.6 96 44-153 1-97 (152)
57 2kd0_A LRR repeats and ubiquit 99.3 2.4E-11 8.3E-16 88.1 9.6 72 42-128 11-82 (85)
58 3m63_B Ubiquitin domain-contai 99.3 3.7E-12 1.2E-16 95.6 5.3 72 43-129 28-99 (101)
59 2dzj_A Synaptic glycoprotein S 99.3 9.9E-12 3.4E-16 91.6 7.3 72 43-128 10-87 (88)
60 2kdb_A Homocysteine-responsive 99.3 1.2E-11 4E-16 93.6 7.9 74 41-127 21-99 (99)
61 3q3f_A Ribonuclease/ubiquitin 99.3 2.2E-11 7.5E-16 102.0 10.3 86 36-135 98-183 (189)
62 3u5e_m 60S ribosomal protein L 99.3 4.8E-13 1.6E-17 103.7 0.0 78 44-135 1-78 (128)
63 3plu_A Ubiquitin-like modifier 99.3 2.6E-11 8.9E-16 92.3 9.4 73 41-127 19-91 (93)
64 3rt3_B Ubiquitin-like protein 99.3 2.7E-11 9.3E-16 95.1 9.7 74 43-130 2-77 (159)
65 1v5t_A 8430435I17RIK protein; 99.3 1.4E-11 4.7E-16 90.1 7.5 74 42-130 6-83 (90)
66 2lxa_A Ubiquitin-like protein 99.2 1.2E-11 4.1E-16 91.6 6.9 72 44-129 2-77 (87)
67 1we7_A SF3A1 protein; structur 99.2 3.3E-11 1.1E-15 91.6 9.6 83 37-133 19-111 (115)
68 1wgh_A Ubiquitin-like 3, HCG-1 99.2 8.4E-11 2.9E-15 91.8 11.5 88 40-134 13-103 (116)
69 1v86_A DNA segment, CHR 7, way 99.2 3E-11 1E-15 89.4 7.9 75 41-131 15-89 (95)
70 2gow_A HCG-1 protein, ubiquiti 99.2 3.9E-11 1.3E-15 94.6 8.9 85 41-132 15-102 (125)
71 1wgg_A Ubiquitin carboxyl-term 99.2 3.5E-11 1.2E-15 89.5 7.5 74 42-131 6-80 (96)
72 1wf9_A NPL4 family protein; be 99.2 5.4E-11 1.9E-15 89.9 7.1 74 43-130 7-95 (107)
73 4dbg_A Ranbp-type and C3HC4-ty 99.2 1.8E-10 6.1E-15 89.0 9.7 78 38-129 17-99 (105)
74 1se9_A Ubiquitin family; ubiqu 99.2 1.6E-10 5.3E-15 91.9 9.6 86 41-133 14-106 (126)
75 3ai5_A Yeast enhanced green fl 99.1 3.1E-10 1.1E-14 101.4 9.9 76 41-130 231-306 (307)
76 2kzr_A Ubiquitin thioesterase 99.1 1.3E-10 4.4E-15 84.1 5.4 72 44-129 1-77 (86)
77 2kjr_A CG11242; UBL, ubiquitin 99.1 7E-10 2.4E-14 83.1 9.5 75 41-128 13-94 (95)
78 1v6e_A Cytoskeleton-associated 99.0 8E-10 2.7E-14 81.4 8.5 73 44-129 8-87 (95)
79 1oqy_A HHR23A, UV excision rep 99.0 4.6E-10 1.6E-14 102.1 7.6 79 41-133 5-87 (368)
80 4ajy_B Transcription elongatio 99.0 1.1E-09 3.6E-14 86.5 7.9 68 51-132 9-83 (118)
81 2fnj_B Transcription elongatio 98.9 3.4E-09 1.2E-13 83.4 8.8 71 44-129 3-80 (118)
82 3shq_A UBLCP1; phosphatase, hy 98.9 1.5E-09 5.3E-14 96.5 7.4 78 41-133 3-83 (320)
83 2kj6_A Tubulin folding cofacto 98.9 5.9E-09 2E-13 78.5 9.5 74 42-128 13-94 (97)
84 2io1_B Small ubiquitin-related 98.9 5.4E-09 1.9E-13 78.1 9.2 82 41-136 5-86 (94)
85 2io0_B Small ubiquitin-related 98.9 7E-09 2.4E-13 77.3 9.4 84 39-136 1-84 (91)
86 4b6w_A Tubulin-specific chaper 98.9 2.3E-09 7.9E-14 78.9 6.4 73 44-130 3-84 (86)
87 1t0y_A Tubulin folding cofacto 98.9 5.7E-09 2E-13 80.5 8.9 74 43-129 6-86 (122)
88 2dzm_A FAS-associated factor 1 98.9 4.3E-09 1.5E-13 80.0 7.4 73 43-129 8-81 (100)
89 1wjn_A Tubulin-folding protein 98.9 9.1E-09 3.1E-13 75.8 8.4 78 39-129 5-92 (97)
90 1wm3_A Ubiquitin-like protein 98.8 4.8E-08 1.7E-12 68.9 9.0 70 44-127 2-71 (72)
91 3a4r_A Nfatc2-interacting prot 98.7 8.6E-08 3E-12 69.1 10.3 73 41-127 5-78 (79)
92 2d07_B Ubiquitin-like protein 98.7 8.6E-08 2.9E-12 71.2 9.2 77 41-131 15-91 (93)
93 1wz0_A Ubiquitin-like protein 98.7 8.6E-08 2.9E-12 73.2 8.5 80 41-134 22-101 (104)
94 2k8h_A Small ubiquitin protein 98.6 2.2E-07 7.5E-12 71.8 9.5 79 41-133 24-102 (110)
95 2xzm_9 RPS31E; ribosome, trans 98.6 9.6E-09 3.3E-13 86.5 0.8 73 44-135 1-73 (189)
96 2eke_C Ubiquitin-like protein 98.5 5.4E-07 1.9E-11 69.3 8.7 76 41-131 29-104 (106)
97 2pjh_A Protein NPL4, nuclear p 98.3 5.2E-07 1.8E-11 65.5 4.0 75 42-128 3-79 (80)
98 3kyd_D Small ubiquitin-related 98.2 1.1E-05 3.9E-10 63.1 9.6 75 41-129 38-112 (115)
99 3goe_A DNA repair protein RAD6 98.0 7E-05 2.4E-09 56.0 10.0 74 41-127 7-80 (82)
100 2bps_A YUKD protein; ubiquitin 97.9 3.9E-05 1.3E-09 56.8 8.2 75 43-126 4-80 (81)
101 3pge_A SUMO-modified prolifera 97.9 7.1E-05 2.4E-09 63.4 9.7 79 41-134 27-105 (200)
102 3tix_A Ubiquitin-like protein 97.7 6.3E-05 2.2E-09 64.4 7.0 80 41-135 55-134 (207)
103 2jxx_A Nfatc2-interacting prot 97.5 0.00047 1.6E-08 52.2 8.9 72 41-126 23-95 (97)
104 3v7o_A Minor nucleoprotein VP3 97.3 3.6E-05 1.2E-09 66.7 0.2 82 40-136 18-99 (227)
105 2kc2_A Talin-1, F1; FERM, adhe 97.2 0.0015 5E-08 52.0 8.7 73 45-129 13-122 (128)
106 2al3_A TUG long isoform; TUG U 97.1 0.0015 5E-08 49.5 7.2 76 41-130 7-82 (90)
107 3uf8_A Ubiquitin-like protein 96.2 0.016 5.6E-07 48.1 8.2 80 40-134 18-97 (209)
108 3ix6_A TS, tsase, thymidylate 96.1 0.00091 3.1E-08 61.1 0.0 79 40-133 18-96 (360)
109 3qx1_A FAS-associated factor 1 96.0 0.052 1.8E-06 38.7 8.8 74 41-128 5-82 (84)
110 4da1_A Protein phosphatase 1K, 95.7 0.0017 5.8E-08 57.9 0.0 80 41-135 28-107 (389)
111 2l76_A Nfatc2-interacting prot 95.5 0.12 4.2E-06 39.2 9.6 73 41-128 19-91 (95)
112 4a3p_A Ubiquitin carboxyl-term 94.9 0.15 5.3E-06 42.4 9.4 84 43-133 127-212 (217)
113 2dzk_A UBX domain-containing p 94.9 0.28 9.5E-06 37.0 9.9 76 41-129 11-90 (109)
114 3jyu_A Ubiquitin carboxyl-term 94.9 0.16 5.3E-06 42.8 9.4 81 43-133 139-224 (231)
115 1vjk_A Molybdopterin convertin 94.8 0.2 6.8E-06 36.5 8.8 78 41-131 7-96 (98)
116 1wj4_A KIAA0794 protein; UBX d 94.6 0.46 1.6E-05 36.7 10.8 75 41-129 41-119 (124)
117 2r2o_A Plexin-B1; effector dom 94.4 0.2 6.8E-06 40.5 8.4 98 39-136 20-135 (138)
118 3ivf_A Talin-1; FERM domain, c 94.1 0.29 9.9E-06 42.9 9.8 77 43-129 3-84 (371)
119 1s3s_G P47 protein; AAA ATPase 93.6 0.26 9E-06 38.1 7.6 69 42-122 51-121 (127)
120 4e71_A Plexin-B2, MM1; transme 93.3 0.49 1.7E-05 36.8 8.5 81 41-129 9-110 (111)
121 1ryj_A Unknown; beta/alpha pro 92.8 1.2 4.2E-05 30.6 9.3 66 43-132 4-69 (70)
122 1h4r_A Merlin; FERM, neurofibr 92.6 0.79 2.7E-05 39.0 9.7 78 41-131 20-102 (314)
123 2cr5_A Reproduction 8; UBX dom 92.5 0.64 2.2E-05 34.8 8.1 74 42-129 22-98 (109)
124 1wgk_A Riken cDNA 2900073H19 p 92.3 0.52 1.8E-05 36.0 7.5 84 42-136 10-111 (114)
125 2qjl_A URM1, ubiquitin-related 92.0 1.2 4.2E-05 32.3 8.9 76 44-131 2-97 (99)
126 2daj_A KIAA0977 protein, COBL- 91.3 1.4 4.7E-05 33.4 8.6 81 38-134 5-87 (91)
127 3po0_A Small archaeal modifier 90.7 0.71 2.4E-05 32.6 6.3 65 54-132 18-88 (89)
128 3ivf_A Talin-1; FERM domain, c 90.6 1.7 5.9E-05 37.9 10.0 79 41-131 83-169 (371)
129 1tyg_B YJBS; alpha beta barrel 90.4 1 3.5E-05 33.1 7.0 66 42-131 19-85 (87)
130 4e74_A Plexin-A4; RBD, structu 89.6 1.5 5.3E-05 34.2 7.9 91 41-131 11-116 (117)
131 3qij_A Protein 4.1; cytoskelet 89.3 1.5 5.2E-05 37.5 8.4 80 41-132 15-98 (296)
132 1f0z_A THis protein; ubiquitin 89.3 1.2 4.1E-05 30.1 6.3 65 44-132 1-65 (66)
133 1ef1_A Moesin; membrane, FERM 89.3 3 0.0001 34.9 10.0 77 43-132 1-83 (294)
134 3rpf_C Molybdopterin convertin 87.1 1.6 5.3E-05 30.1 5.8 72 44-132 1-73 (74)
135 3h6n_A Plexin-D1; structural g 86.5 7.1 0.00024 31.0 10.0 90 43-132 4-107 (127)
136 3dwg_C 9.5 kDa culture filtrat 86.3 0.8 2.7E-05 32.6 4.1 66 57-132 20-92 (93)
137 3hm6_X Plexin-B1; structural g 85.8 4.8 0.00016 39.4 10.4 114 24-137 233-369 (644)
138 2ns5_A Partitioning-defective 85.2 3.8 0.00013 30.4 7.4 75 43-125 2-78 (85)
139 3ig3_A Plxna3 protein; plexin 84.4 9.6 0.00033 37.3 11.7 114 24-137 209-342 (627)
140 1vd2_A Protein kinase C, IOTA 83.7 2.6 8.8E-05 31.3 5.9 80 41-125 4-83 (89)
141 2i1j_A Moesin; FERM, coiled-co 81.3 6.5 0.00022 37.3 9.1 78 42-132 3-86 (575)
142 3kuz_A Plexin-C1; structural g 80.0 12 0.00041 29.7 8.8 91 38-129 14-126 (126)
143 2kmm_A Guanosine-3',5'-BIS(dip 79.7 4.8 0.00016 26.8 5.7 67 44-133 1-67 (73)
144 1oey_A P67-PHOX, neutrophil cy 78.7 7.4 0.00025 28.6 6.8 39 43-83 5-43 (83)
145 2l52_A Methanosarcina acetivor 77.9 11 0.00036 27.4 7.5 83 43-131 3-97 (99)
146 3u7z_A Putative metal binding 76.6 8.7 0.0003 29.0 6.9 80 38-128 2-97 (101)
147 4a6q_A Histone deacetylase com 76.4 13 0.00046 29.9 8.3 74 55-129 55-138 (143)
148 3onh_A Ubiquitin-activating en 76.3 6.4 0.00022 31.3 6.3 53 63-129 19-79 (127)
149 2q5w_D Molybdopterin convertin 76.2 5.5 0.00019 26.9 5.3 60 54-131 16-75 (77)
150 4efo_A Serine/threonine-protei 75.7 5 0.00017 30.0 5.3 49 46-107 15-64 (94)
151 2kl0_A Putative thiamin biosyn 75.5 8 0.00027 27.0 6.0 66 44-134 1-66 (73)
152 2k9x_A Tburm1, uncharacterized 74.6 3.5 0.00012 31.3 4.2 82 43-133 4-102 (110)
153 1fm0_D Molybdopterin convertin 74.2 6.8 0.00023 26.6 5.3 60 55-132 18-80 (81)
154 2l32_A Small archaeal modifier 72.4 4.2 0.00014 28.6 3.9 66 44-134 1-67 (74)
155 1y8x_B Ubiquitin-activating en 72.1 4.9 0.00017 30.2 4.5 69 55-127 6-82 (98)
156 2g1e_A Hypothetical protein TA 71.4 17 0.0006 24.9 7.0 64 58-131 19-88 (90)
157 1q1o_A Cell division control p 71.0 11 0.00037 28.6 6.2 41 40-80 2-49 (98)
158 2k5p_A THis protein, thiamine- 68.6 8.4 0.00029 27.3 4.9 66 44-133 1-69 (78)
159 2cu3_A Unknown function protei 67.1 23 0.00077 23.5 6.6 61 50-132 3-63 (64)
160 1ip9_A BEM1 protein; ubiquitin 61.2 27 0.00091 26.0 6.5 37 42-79 11-47 (85)
161 2bb6_A TCII, TC II, transcobal 57.5 33 0.0011 31.7 7.8 78 43-127 318-410 (414)
162 2v1y_A Phosphatidylinositol-4, 53.9 30 0.001 26.5 5.9 47 34-80 8-56 (108)
163 3hvz_A Uncharacterized protein 49.8 42 0.0014 23.7 5.8 61 45-128 7-67 (78)
164 3pvl_A Myosin VIIA isoform 1; 49.2 51 0.0018 31.6 8.0 40 41-80 261-300 (655)
165 1t3q_A Quinoline 2-oxidoreduct 46.6 23 0.0008 28.1 4.5 30 41-71 7-36 (168)
166 2ylm_A Ubiquitin carboxyl-term 46.0 1.1E+02 0.0037 28.6 9.5 48 33-80 321-378 (530)
167 2pmv_A Gastric intrinsic facto 45.9 45 0.0015 30.7 6.7 67 56-127 315-395 (399)
168 2i1s_A Hypothetical protein; m 44.9 88 0.003 25.0 7.7 36 43-79 8-47 (188)
169 1wgr_A Growth factor receptor- 44.6 97 0.0033 23.2 8.4 80 42-130 8-93 (100)
170 3au4_A Myosin-X; protein-prote 44.4 43 0.0015 30.7 6.4 40 41-80 214-253 (555)
171 2eki_A DRG 1, developmentally- 43.6 18 0.00062 27.1 3.1 71 44-129 12-87 (93)
172 2ylm_A Ubiquitin carboxyl-term 43.4 24 0.00081 33.0 4.6 68 57-131 150-219 (530)
173 2kkc_A Sequestosome-1; P62, PB 43.0 80 0.0027 23.7 6.7 38 64-102 42-79 (102)
174 1j0g_A Hypothetical protein 18 38.3 81 0.0028 23.6 5.9 78 43-133 12-90 (92)
175 1p9y_A Trigger factor, TF; alp 36.0 47 0.0016 24.9 4.5 34 41-78 1-36 (121)
176 1v8c_A MOAD related protein; r 35.7 74 0.0025 25.3 5.9 68 57-134 17-88 (168)
177 1wgy_A RAP guanine nucleotide 35.3 1.4E+02 0.0049 22.5 7.5 33 46-78 12-44 (104)
178 3chb_D Cholera toxin; toxin/re 35.2 46 0.0016 25.1 4.2 46 32-77 24-70 (104)
179 4dxa_B KREV interaction trappe 35.1 30 0.001 29.5 3.6 29 42-70 4-34 (322)
180 1rws_A Hypothetical protein PF 33.8 11 0.00037 26.1 0.5 51 58-131 25-75 (77)
181 2hj1_A Hypothetical protein; s 32.6 1.5E+02 0.005 21.8 7.1 78 43-136 12-92 (97)
182 2zjd_A Microtubule-associated 32.0 1.6E+02 0.0055 22.8 7.1 73 42-127 34-117 (130)
183 2r2q_A Gamma-aminobutyric acid 30.9 99 0.0034 23.0 5.5 61 42-115 26-92 (110)
184 3u52_E Phenol hydroxylase comp 29.3 1.6E+02 0.0055 23.0 6.6 80 41-127 21-107 (119)
185 2kvr_A Ubiquitin carboxyl-term 28.6 60 0.002 25.0 4.0 27 57-83 59-85 (130)
186 3tca_A Amyloid beta A4 precurs 26.5 1.4E+02 0.0048 24.0 6.2 38 43-80 34-71 (291)
187 2nnz_A Hypothetical protein; b 25.8 34 0.0012 27.3 2.2 32 41-73 27-61 (153)
188 1mli_A Muconolactone isomerase 24.1 31 0.0011 26.0 1.6 37 55-95 6-45 (96)
189 2dhz_A RAP guanine nucleotide 23.3 2.4E+02 0.0082 21.8 6.6 37 43-79 9-45 (120)
190 3idw_A Actin cytoskeleton-regu 23.0 1.2 4.2E-05 32.4 -6.2 29 108-136 39-67 (72)
191 3r8s_T 50S ribosomal protein L 22.6 1E+02 0.0035 22.7 4.1 29 53-81 27-55 (93)
192 1ltr_D ETB-R2, heat-labIle ent 22.4 59 0.002 24.9 2.8 45 33-77 24-69 (113)
193 1n62_A Carbon monoxide dehydro 22.4 89 0.003 25.0 4.1 26 44-70 4-29 (166)
194 1vq8_S 50S ribosomal protein L 22.2 85 0.0029 22.8 3.6 28 53-80 22-49 (85)
195 2zjr_Q 50S ribosomal protein L 21.9 85 0.0029 23.2 3.6 25 56-80 25-49 (95)
196 2wlb_A ETP1-FD, electron trans 21.3 1.6E+02 0.0056 20.6 5.0 28 42-69 2-29 (103)
197 1ffv_A CUTS, iron-sulfur prote 20.7 1.1E+02 0.0036 24.5 4.2 26 44-70 4-29 (163)
198 3j21_T 50S ribosomal protein L 20.6 1.3E+02 0.0043 22.0 4.2 28 53-80 23-50 (86)
199 3lxf_A Ferredoxin; iron, iron- 20.3 1.1E+02 0.0039 21.9 4.0 25 45-69 2-26 (104)
200 2kmc_A Fermitin family homolog 20.1 2.9E+02 0.01 21.0 9.8 76 43-129 19-99 (102)
201 3hrd_D Nicotinate dehydrogenas 20.1 1E+02 0.0035 24.6 4.0 25 44-69 4-28 (160)
No 1
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.96 E-value=2.1e-29 Score=194.37 Aligned_cols=97 Identities=31% Similarity=0.565 Sum_probs=90.8
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCC--CCCCCcccccccccceEEeeCCeeecCCcchhcccCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSP--TEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRM 118 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~p--e~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGI 118 (205)
+.+|+|+|++++|+.|+|+|++++||+|||++|++++..++ ++|+++|||+|+|.+|||+|+|++|.+|+++|++|||
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 46899999999999999999999999999999999987655 5688999999999999999999888888999999999
Q ss_pred CCCCEEEEEEecccccccc
Q 040719 119 KDGDELQFSRHMSLDYLHS 137 (205)
Q Consensus 119 kDGd~L~Fk~rl~~~~~~~ 137 (205)
++|++|||+.|+...|.|.
T Consensus 85 ~~g~~l~lv~~lr~~~~~~ 103 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQKSGPS 103 (105)
T ss_dssp CSSEEEEEEECSCSCCCCC
T ss_pred CCCCEEEEEehhccCCCCC
Confidence 9999999999999998875
No 2
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.57 E-value=2.4e-14 Score=100.69 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=68.0
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
+.|.|+|+..+|+.+.++|+.++||++||+.|+.....+++. | .|+|.|+ .++|+.+|.+|||++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~--q-----------rL~~~G~-~L~d~~tL~~~~i~~~ 68 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL--F-----------WLTFEGK-PLEDQLPLGEYGLKPL 68 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGG--E-----------EEEETTE-ECCTTSBGGGGTCCTT
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHH--E-----------EEEECCE-ECCCCCcHHHCCCCCC
Confidence 579999999999999999999999999999999998776664 3 5999995 4578999999999999
Q ss_pred CEEEEEEecc
Q 040719 122 DELQFSRHMS 131 (205)
Q Consensus 122 d~L~Fk~rl~ 131 (205)
++|+++.|+.
T Consensus 69 ~~l~l~~rl~ 78 (79)
T 3phx_B 69 STVFMNLRLR 78 (79)
T ss_dssp CEEEEEECCB
T ss_pred CEEEEEEecC
Confidence 9999999875
No 3
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.56 E-value=2.4e-14 Score=103.99 Aligned_cols=77 Identities=16% Similarity=0.387 Sum_probs=68.4
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
...|+|+|+..+|+.|.|.|+.++||.+||+.|+..+..+++. | .|+|.|+ .++|+.+|.+|||++
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~--q-----------rL~~~Gk-~L~D~~tL~~~gi~~ 80 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQ--Q-----------RLIFAGK-QLEDGRTLSDYNIQK 80 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG--C-----------EEEETTE-ECCTTCBTGGGTCCT
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhh--E-----------EEEECCe-ECCCcCcHHHCCCCC
Confidence 4689999999999999999999999999999999998766664 3 5999995 557889999999999
Q ss_pred CCEEEEEEecc
Q 040719 121 GDELQFSRHMS 131 (205)
Q Consensus 121 Gd~L~Fk~rl~ 131 (205)
|++|+++.|+.
T Consensus 81 g~~i~l~~rlr 91 (91)
T 3v6c_B 81 ESTLHLVLRLR 91 (91)
T ss_dssp TCEEEEECCCC
T ss_pred CCEEEEEEecC
Confidence 99999998863
No 4
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.55 E-value=3.5e-14 Score=100.95 Aligned_cols=79 Identities=22% Similarity=0.408 Sum_probs=69.5
Q ss_pred CCCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC
Q 040719 40 PQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 40 ~~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk 119 (205)
++..|+|+|+..+|+.|.|+|+.++||.+||..|+.....+++. | .|+|.|+ .++|+.+|.+|||+
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~--q-----------rL~~~G~-~L~d~~tL~~~~i~ 74 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQ--Q-----------RLIYSGK-QMNDEKTAADYKIL 74 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG--C-----------CEEETTE-ECCTTSBGGGGTCC
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHH--E-----------EEEECCe-ECCCCCcHHHcCCC
Confidence 35689999999999999999999999999999999998766664 3 4999994 55789999999999
Q ss_pred CCCEEEEEEeccc
Q 040719 120 DGDELQFSRHMSL 132 (205)
Q Consensus 120 DGd~L~Fk~rl~~ 132 (205)
+|++|+++.|+..
T Consensus 75 ~~~~i~l~~rl~G 87 (88)
T 3dbh_I 75 GGSVLHLVLRLRG 87 (88)
T ss_dssp TTCEEEECCCCCC
T ss_pred CCCEEEEEEeCCC
Confidence 9999999988754
No 5
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=4.1e-14 Score=99.53 Aligned_cols=80 Identities=15% Similarity=0.287 Sum_probs=69.2
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
..|+|+|+..+|+.+.|+|+.++||.+||+.|++.+..+++. | .|+|.|+ .++|+.+|.+|||++|
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~--q-----------rL~~~g~-~L~d~~tL~~~~i~~~ 67 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ--Q-----------RLIFAGK-QLEDGRTLSDYNIQKW 67 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG--C-----------EEEETTE-ECCTTSBTGGGTCCTT
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHH--E-----------EEEECCE-ECCCCCCHHHcCCCCC
Confidence 479999999999999999999999999999999998776664 2 5899994 5578899999999999
Q ss_pred CEEEEEEecccccc
Q 040719 122 DELQFSRHMSLDYL 135 (205)
Q Consensus 122 d~L~Fk~rl~~~~~ 135 (205)
++|+++.|+.....
T Consensus 68 ~~l~l~~r~~GG~g 81 (85)
T 3mtn_B 68 STLFLLLRLRGGGG 81 (85)
T ss_dssp CEEEEECCCCCC--
T ss_pred CEEEEEEECcCCCC
Confidence 99999999876543
No 6
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=2.6e-14 Score=100.85 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=67.2
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
..|+|+|+..+|+.+.|+|+.++||.+||++|++.+..+++. ..|+|.|+ .++|+.+|.+|||++|
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~-------------qrL~~~g~-~L~d~~tL~~~~i~~~ 67 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQ-------------QRLIFAGK-QLEDGRTLSDYNIHNH 67 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGG-------------EEEEETBE-ECCTTCBTTTTTCCTT
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHH-------------EEEEECCe-ECCCCCCHHHCCCCCC
Confidence 479999999999999999999999999999999998776664 36999995 4578899999999999
Q ss_pred CEEEEEEecccccc
Q 040719 122 DELQFSRHMSLDYL 135 (205)
Q Consensus 122 d~L~Fk~rl~~~~~ 135 (205)
++|+++.|+.....
T Consensus 68 ~~i~l~~rl~GG~g 81 (85)
T 3n3k_B 68 SALYLLLKLRGGGG 81 (85)
T ss_dssp CEEEEEECCC----
T ss_pred CEEEEEEeccCCCC
Confidence 99999999876543
No 7
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.53 E-value=5.6e-14 Score=96.49 Aligned_cols=75 Identities=23% Similarity=0.441 Sum_probs=65.9
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+..+|+.+.++|+.++||.+||+.|++....+++. ..|+|.|+. ++|+.+|.+|||++|++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~-------------q~L~~~g~~-L~d~~tL~~~~i~~g~~ 66 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQ-------------QRLIYSGKQ-MNDEKTAADYKILGGSV 66 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGG-------------EEEEETTEE-CCTTSBGGGGTCCTTCE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHH-------------EEEEECCEE-CCCCCcHHHcCCCCCCE
Confidence 8999999999999999999999999999999998666654 369999955 47889999999999999
Q ss_pred EEEEEeccc
Q 040719 124 LQFSRHMSL 132 (205)
Q Consensus 124 L~Fk~rl~~ 132 (205)
|++..|+..
T Consensus 67 i~l~~~~~G 75 (76)
T 1ndd_A 67 LHLVLALRG 75 (76)
T ss_dssp EEEEECCC-
T ss_pred EEEEEeCCC
Confidence 999988753
No 8
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.53 E-value=6.5e-14 Score=96.15 Aligned_cols=75 Identities=17% Similarity=0.387 Sum_probs=66.3
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+..+|+.+.++|+.++||++||+.|++.+..+++. ..|+|.|+.| +|+.+|.+|||++|++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~-------------q~L~~~g~~L-~d~~tL~~~~i~~g~~ 66 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ-------------QRLIFAGKQL-EDGRTLSDYNIQREST 66 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGG-------------EEEEETTEEC-CTTCBTGGGTCCTTCE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHH-------------eEEEECCeEC-CCCCcHHHcCCCCCCE
Confidence 8999999999999999999999999999999998666553 4699999554 7889999999999999
Q ss_pred EEEEEeccc
Q 040719 124 LQFSRHMSL 132 (205)
Q Consensus 124 L~Fk~rl~~ 132 (205)
|++..|+..
T Consensus 67 i~l~~~~~G 75 (76)
T 3a9j_A 67 LHLVLRLRG 75 (76)
T ss_dssp EEEEECCCC
T ss_pred EEEEEeCCC
Confidence 999988753
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.53 E-value=4.1e-14 Score=102.86 Aligned_cols=80 Identities=23% Similarity=0.366 Sum_probs=67.4
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+..+|+.|.|+|+.++||++||+.|+.....+++. | .|+|.| ++++|+.+|.+|||++|++
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~--q-----------rLi~~G-k~L~D~~tL~~~~i~~g~~ 66 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQ--Q-----------RLIYSG-KQMNDEKTAADYKILGGSV 66 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGG--C-----------EEEETT-EECCTTSBTTTTTCCTTCE
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhH--E-----------EEEECC-eECCCCCcHHHcCCCCCCE
Confidence 8999999999999999999999999999999998766664 3 599999 5558899999999999999
Q ss_pred EEEEEecccccccc
Q 040719 124 LQFSRHMSLDYLHS 137 (205)
Q Consensus 124 L~Fk~rl~~~~~~~ 137 (205)
|+++.|+.....+-
T Consensus 67 l~l~~rl~Gg~~~~ 80 (88)
T 4fbj_B 67 LHLVLALRGGGGLR 80 (88)
T ss_dssp EEEECBCC------
T ss_pred EEEEEECCCCCCCC
Confidence 99999998876654
No 10
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.52 E-value=6.6e-14 Score=101.71 Aligned_cols=80 Identities=15% Similarity=0.307 Sum_probs=68.1
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
.|+|+|+..+|+.|.|+|+.++||.+||+.|++.+..+++. ..|+|.|+. ++|+.+|.+|||++|+
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~-------------qrL~~~G~~-L~d~~tL~~~~i~~~~ 66 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ-------------QRLIFAGKQ-LEDGRTLSDYNIQKES 66 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGG-------------EEEEETTEE-CCTTSBTGGGTCCTTC
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhH-------------EEEEECCEE-CCCCCcHHHcCCCCCC
Confidence 39999999999999999999999999999999998766664 369999955 5788999999999999
Q ss_pred EEEEEEeccccccc
Q 040719 123 ELQFSRHMSLDYLH 136 (205)
Q Consensus 123 ~L~Fk~rl~~~~~~ 136 (205)
+|+++.|+......
T Consensus 67 ~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 67 TLHLVLRLRGYADL 80 (96)
T ss_dssp EEEEEECCCC----
T ss_pred EEEEEEEcCCCCcc
Confidence 99999999887553
No 11
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.5e-14 Score=104.43 Aligned_cols=79 Identities=15% Similarity=0.351 Sum_probs=68.4
Q ss_pred CCCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC
Q 040719 40 PQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 40 ~~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk 119 (205)
++..|+|+|+..+|+.|.|+|+.++||.+||+.|+..+..+++. | .|+|.|+ .++|+.+|.+|||+
T Consensus 19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~--q-----------rLi~~Gk-~L~D~~tL~~~~i~ 84 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ--Q-----------RLIFAGK-QLEDGRTLSDYNIQ 84 (98)
T ss_dssp ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGG--C-----------EEEETTE-ECCTTCBSGGGTCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhH--E-----------EEEECCE-ECCCCCcHHHCCCC
Confidence 35689999999999999999999999999999999998766664 3 5999995 45889999999999
Q ss_pred CCCEEEEEEeccc
Q 040719 120 DGDELQFSRHMSL 132 (205)
Q Consensus 120 DGd~L~Fk~rl~~ 132 (205)
+|++|+++.|+..
T Consensus 85 ~g~~i~l~~rl~G 97 (98)
T 4hcn_B 85 KESTLHLVLRLRG 97 (98)
T ss_dssp TTEEEEEECBCSC
T ss_pred CCCEEEEEEecCC
Confidence 9999999998764
No 12
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=7.5e-14 Score=97.63 Aligned_cols=76 Identities=18% Similarity=0.377 Sum_probs=66.7
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
...|+|+|+..+|+.+.|+|+.++||++||+.|++.+..+++. | .|+|.|+.| +|+.+|.+|||++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~--q-----------rL~~~gk~L-~d~~tL~~~~i~~ 70 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQ--Q-----------RLLFKGKAL-ADGKRLSDYSIGP 70 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTT--C-----------EEEETTEEC-CTTSBGGGGTCCS
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHH--E-----------EEEECCeEC-CCCCcHHHcCCCC
Confidence 3579999999999999999999999999999999998766664 3 589999554 7889999999999
Q ss_pred CCEEEEEEec
Q 040719 121 GDELQFSRHM 130 (205)
Q Consensus 121 Gd~L~Fk~rl 130 (205)
|++|+++.++
T Consensus 71 g~~i~l~~~~ 80 (81)
T 2dzi_A 71 NSKLNLVVKP 80 (81)
T ss_dssp SBCCEEECCC
T ss_pred CCEEEEEEeC
Confidence 9999998775
No 13
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=1e-13 Score=96.98 Aligned_cols=76 Identities=28% Similarity=0.460 Sum_probs=65.9
Q ss_pred CCeEEEEEecCCcEE-EEE-eCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC
Q 040719 42 PRIRLSVLKLDGSRF-DVY-IERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 42 ~aMkLtVrkldGs~f-~V~-V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk 119 (205)
+.|+|+|+..+|+.+ .++ |+.++||++||+.|+.....+++. ..|+|.|+. ++|+.+|.+|||+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~-------------qrL~~~g~~-L~d~~tL~~~~i~ 66 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGL-------------QRLFYRGKQ-MEDGHTLFDYEVR 66 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGG-------------EEEEETTEE-CCTTCBTTTTTCC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhh-------------EEEEECCEE-CCCCCCHHHcCCC
Confidence 479999999999985 999 999999999999999998666654 359999955 4788999999999
Q ss_pred CCCEEEEEEecc
Q 040719 120 DGDELQFSRHMS 131 (205)
Q Consensus 120 DGd~L~Fk~rl~ 131 (205)
+|++|+++.|++
T Consensus 67 ~g~~i~l~~r~~ 78 (78)
T 2faz_A 67 LNDTIQLLVRQS 78 (78)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCEEEEEEeCC
Confidence 999999998763
No 14
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=1.5e-13 Score=98.01 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=69.6
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
...|+|+|+..+|+.+.++|+.++||.+||++|+.....+++. ..|+|.|+. ++|+.+|.+|||++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-------------qrL~~~Gk~-L~d~~tL~~~~i~~ 70 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQ-------------QQLEFQGQV-LQDWLGLGIYGIQD 70 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTT-------------EEEEETTEE-CCSSSBHHHHTCCT
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHH-------------EEEEECCEE-ccCCCCHHHCCCCC
Confidence 4679999999999999999999999999999999998666664 359999954 57889999999999
Q ss_pred CCEEEEEEecccc
Q 040719 121 GDELQFSRHMSLD 133 (205)
Q Consensus 121 Gd~L~Fk~rl~~~ 133 (205)
|++|+++.|+...
T Consensus 71 g~~i~l~~~~~GG 83 (87)
T 1wh3_A 71 SDTLILSKKKGSG 83 (87)
T ss_dssp TEEEEEEECSCCC
T ss_pred CCEEEEEEeccCC
Confidence 9999999998754
No 15
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=99.22 Aligned_cols=74 Identities=15% Similarity=0.383 Sum_probs=65.6
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
...|+|+|+..+|+.+.++|+.++||++||+.|+..+..+++. | .|+|.| ++++|+.+|.+||| +
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~--q-----------rLi~~G-k~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEK--Q-----------RLIYQG-RVLQDDKKLQEYNV-G 79 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGG--E-----------EEEETT-EECCTTSBGGGGTC-T
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHH--E-----------EEEECC-EECCCCCcHHHcCC-C
Confidence 4579999999999999999999999999999999998776664 3 599999 55588999999999 8
Q ss_pred CCEEEEEEe
Q 040719 121 GDELQFSRH 129 (205)
Q Consensus 121 Gd~L~Fk~r 129 (205)
|++||++.|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999875
No 16
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.48 E-value=2.6e-13 Score=97.71 Aligned_cols=79 Identities=14% Similarity=0.336 Sum_probs=67.6
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
..|+|+|+..+|+.|.|+|..+.||.+||+.|+..+..+++. | .|+|.| ++++|+.+|.+||| +|
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~--q-----------rLi~~G-k~L~d~~tL~~~~i-~g 68 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEK--Q-----------RLIYQG-RVLQDDKKLQEYNV-GG 68 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGG--E-----------EEEETT-EECCTTSBGGGGTC-TT
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHH--E-----------EEEECC-eECCCCCCHHHcCC-CC
Confidence 479999999999999999999999999999999998766654 3 599999 55588999999999 99
Q ss_pred CEEEEEEecccccc
Q 040719 122 DELQFSRHMSLDYL 135 (205)
Q Consensus 122 d~L~Fk~rl~~~~~ 135 (205)
++|+++.+....-.
T Consensus 69 ~~i~l~~~~~~~~~ 82 (90)
T 4dwf_A 69 KVIHLVERAPPQTH 82 (90)
T ss_dssp EEEEEEECCCC---
T ss_pred cEEEEEecCCCCCC
Confidence 99999998765443
No 17
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.47 E-value=3.7e-13 Score=93.25 Aligned_cols=71 Identities=15% Similarity=0.455 Sum_probs=62.7
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+. +|+.+.++|+.++||.+||+.|+.....+++. ..|+|.|+ .++|+.+|.+|||++|++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~-------------qrL~~~gk-~L~d~~tL~~~~i~~g~~ 69 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVAN-------------QRLIYSGK-ILKDDQTVESYHIQDGHS 69 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGG-------------EEEEETTE-ECCTTSBTGGGTCCTTCE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHH-------------EEEEECCe-EcCCCCCHHHcCCCCCCE
Confidence 8999988 99999999999999999999999998666654 35999995 557889999999999999
Q ss_pred EEEEEe
Q 040719 124 LQFSRH 129 (205)
Q Consensus 124 L~Fk~r 129 (205)
|+++.+
T Consensus 70 i~l~~~ 75 (77)
T 2bwf_A 70 VHLVKS 75 (77)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999865
No 18
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=1.9e-13 Score=99.27 Aligned_cols=78 Identities=21% Similarity=0.422 Sum_probs=64.5
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
+.|.|.|++.+|+.+.|+|+.++||++||++|++.+..+++. + .|+|.|+.| .|+.+|.+|||++|
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~--q-----------rL~~~Gk~L-~D~~tL~~~gi~~g 73 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQ--Q-----------RLIFAGKQL-EDGRTLSDYNIQKE 73 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGG--C-----------EEEETTEEC-CTTSBSGGGTCCTT
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhh--E-----------EEEECCEEC-CCCCcHHHcCCCCC
Confidence 579999999999999999999999999999999998766664 3 589999554 78899999999999
Q ss_pred CEEEEEEecccc
Q 040719 122 DELQFSRHMSLD 133 (205)
Q Consensus 122 d~L~Fk~rl~~~ 133 (205)
++|+++.++...
T Consensus 74 ~~i~l~~r~~GG 85 (88)
T 1sif_A 74 STLHLVLRLRGG 85 (88)
T ss_dssp CEEEEEC-----
T ss_pred CEEEEEEeCCCC
Confidence 999999887654
No 19
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.47 E-value=2.9e-13 Score=98.50 Aligned_cols=76 Identities=17% Similarity=0.335 Sum_probs=67.3
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+.-|+|+|++.+|+.+.|+|+.++||++||+.|+.....+++. | .|+|.|+.|++|+.+|.+|||++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~--Q-----------rLi~~Gk~lL~D~~tL~~y~I~~ 74 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSK--Q-----------TLIVDGIVILREDLTVEQCQIVP 74 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGG--E-----------EEEETTEECCCSSSBHHHHTCCT
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHH--E-----------EEEECCEEecCCcCCHHHcCCCC
Confidence 4679999999999999999999999999999999998766664 3 59999965268899999999999
Q ss_pred CCEEEEEEe
Q 040719 121 GDELQFSRH 129 (205)
Q Consensus 121 Gd~L~Fk~r 129 (205)
|++|+++.+
T Consensus 75 gs~i~lv~~ 83 (84)
T 2kk8_A 75 TSDIQLEVS 83 (84)
T ss_dssp TSCEEEEEC
T ss_pred CCEEEEEEc
Confidence 999998764
No 20
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.47 E-value=4.7e-13 Score=94.79 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=63.7
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHh---ccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVF---TLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRM 118 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f---~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGI 118 (205)
..|+|+|+..+|+.+.++|+.++||++||+.|+..+ ..+++. ..|+|.|+ .++|+.+|.+|||
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~-------------qrLi~~Gk-~L~D~~tL~~~~i 69 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAG-------------QKLIYAGK-ILSDDVPIRDYRI 69 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGG-------------EEEEETTE-ECCTTSBGGGGCC
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHH-------------eEEEECCE-ECcCCCCHHHcCC
Confidence 469999999999999999999999999999999984 234443 36999995 5578899999999
Q ss_pred CCCCEEEEEEecc
Q 040719 119 KDGDELQFSRHMS 131 (205)
Q Consensus 119 kDGd~L~Fk~rl~ 131 (205)
++|++|+++.+-+
T Consensus 70 ~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 70 DEKNFVVVMVTKT 82 (85)
T ss_dssp CTTSEEEEEEC--
T ss_pred CCCCEEEEEEcCC
Confidence 9999999987543
No 21
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=5.6e-13 Score=95.57 Aligned_cols=80 Identities=21% Similarity=0.342 Sum_probs=69.0
Q ss_pred CCCeEEEEEecCC-cEEEEE-eCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCC
Q 040719 41 QPRIRLSVLKLDG-SRFDVY-IERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRM 118 (205)
Q Consensus 41 ~~aMkLtVrkldG-s~f~V~-V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGI 118 (205)
.+.|+|+|+..+| +.+.|+ |+.++||.+||+.|+.....+++. ..|+|.|+ .++|+.+|.+|||
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~-------------qrL~~~gk-~L~d~~tL~~~~i 70 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPEC-------------QRLFYRGK-QLENGYTLFDYDV 70 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTT-------------EEEEETTE-ECCSSSBHHHHTC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhh-------------EEEEECCe-ECCCCCCHHHCCC
Confidence 3579999999999 799994 999999999999999998666664 35999995 4578999999999
Q ss_pred CCCCEEEEEEeccccc
Q 040719 119 KDGDELQFSRHMSLDY 134 (205)
Q Consensus 119 kDGd~L~Fk~rl~~~~ 134 (205)
++|++|+++.++....
T Consensus 71 ~~g~~i~l~~~~~gG~ 86 (89)
T 1wy8_A 71 GLNDIIQLLVRPDSGP 86 (89)
T ss_dssp CTTCEEEEEECCCCSS
T ss_pred CCCCEEEEEEeCCCCC
Confidence 9999999999987653
No 22
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.46 E-value=7.4e-13 Score=100.23 Aligned_cols=78 Identities=15% Similarity=0.347 Sum_probs=68.8
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
...|+|+|+..+|+.+.|+|+.++||++||++|+.....+++. ..|+|.|+. +.|+.+|.+|||++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-------------qrLi~~Gk~-L~D~~tL~~~gI~~ 98 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ-------------QRLIFAGKQ-LEDGRTLSDYNIQK 98 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTT-------------EEEEETTEE-CCSSCBTTTTTCCT
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCccc-------------EEEEECCEE-CCCCCcHHHcCCCC
Confidence 4589999999999999999999999999999999998766664 369999955 57899999999999
Q ss_pred CCEEEEEEeccc
Q 040719 121 GDELQFSRHMSL 132 (205)
Q Consensus 121 Gd~L~Fk~rl~~ 132 (205)
|++|+++.|+..
T Consensus 99 gs~I~l~~rl~G 110 (111)
T 2ojr_A 99 ESTLHLVLRLRG 110 (111)
T ss_dssp TCEEEEEECCCC
T ss_pred CCEEEEEEeCCC
Confidence 999999998754
No 23
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=5.6e-13 Score=98.03 Aligned_cols=75 Identities=19% Similarity=0.375 Sum_probs=64.3
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHh---ccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVF---TLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f---~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
|+|+|+..+|+.+.|+|+.++||++||+.|+..+ ..+++. ..|+|.|+ +++|+.+|.+|||++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~-------------qrLi~~Gk-~L~D~~tL~~ygI~~ 66 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAG-------------QKLIYAGK-ILNDDTALKEYKIDE 66 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTT-------------EEEEETTE-ECCTTSBGGGGTCCS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhh-------------EEEEECCE-ECCCcCcHHHCCCCC
Confidence 8999999999999999999999999999999984 244443 36999995 557889999999999
Q ss_pred CCEEEEEEeccc
Q 040719 121 GDELQFSRHMSL 132 (205)
Q Consensus 121 Gd~L~Fk~rl~~ 132 (205)
|++|+++.+...
T Consensus 67 g~~i~l~~~~~~ 78 (95)
T 1uel_A 67 KNFVVVMVTKPK 78 (95)
T ss_dssp SSEEEEEESSCC
T ss_pred CCEEEEEEeCCC
Confidence 999999876543
No 24
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.45 E-value=7.5e-13 Score=103.99 Aligned_cols=106 Identities=14% Similarity=0.182 Sum_probs=82.0
Q ss_pred CCccccCCCCcCCcCCCccccCCCcccc--CCCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCccc
Q 040719 12 APLTLDDVDDVGDCYEGNSVRTMPYLKL--PQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKIS 89 (205)
Q Consensus 12 s~l~~~d~~~~~~~~~~~~~~~~s~~al--~~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkIS 89 (205)
+.-.|+|....++|. +.-+..-+.-+ +.+.|.|+|+..+|+.+.++|+.+.||++||+.|+.....+++.
T Consensus 50 ~g~~L~d~~tL~~y~--i~~~~~l~l~~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~------ 121 (159)
T 3rt3_B 50 SGVALQDRVPLASQG--LGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL------ 121 (159)
T ss_dssp TCCBCCTTSCGGGGT--CCTTCEEEEEECCCCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGG------
T ss_pred CCCCCCCCCCHHHcC--CCCCCEEEEEccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHH------
Confidence 344567766666662 33343222222 25689999999999999999999999999999999998766664
Q ss_pred ccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEecccc
Q 040719 90 WTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSLD 133 (205)
Q Consensus 90 W~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~~~ 133 (205)
..|+|+| +.++|+.+|.+|||++|++|+++.|+...
T Consensus 122 -------q~L~~~G-~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 122 -------FWLTFEG-KPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp -------EEEEETT-EECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred -------EEEEECC-eecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 3699999 55578999999999999999999998754
No 25
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.44 E-value=3.2e-13 Score=98.68 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=67.5
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
...|+|+|+.. |+.+.|+|+.++||.+||+.|+.....+++. | .|+|.|+ +++|+.+|.+|||++
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~--q-----------rL~~~Gk-~L~D~~tL~~~gi~~ 79 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADR--L-----------VLIFTGK-ILRDQDILSQRGILD 79 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTT--B-----------CCEETTE-ECCTTSCHHHHTCCT
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHH--E-----------EEEECCE-ECCCcCCHHHCCCCC
Confidence 45799999888 9999999999999999999999998766664 3 4899995 557899999999999
Q ss_pred CCEEEEEEecccc
Q 040719 121 GDELQFSRHMSLD 133 (205)
Q Consensus 121 Gd~L~Fk~rl~~~ 133 (205)
|++|+++.++...
T Consensus 80 g~~i~l~~~~~~g 92 (96)
T 1wx8_A 80 GSTVHVVVRSHSG 92 (96)
T ss_dssp TEEEECCBCCSSC
T ss_pred CCEEEEEEeCCCC
Confidence 9999998887654
No 26
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.44 E-value=6.3e-13 Score=97.66 Aligned_cols=76 Identities=17% Similarity=0.385 Sum_probs=67.1
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+..+|+.+.|+|+.++||++||+.|+.....+++. ..|+|.|+.| +|+.+|.+|||++|++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~-------------qrL~~~Gk~L-~D~~tL~~~gi~~g~~ 66 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ-------------QRLIFAGKQL-EDGRTLSDYNIQKEST 66 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGG-------------EEEEETTEEC-CTTSBTGGGTCCTTCE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhh-------------EEEEECCEEC-CCCCCHHHcCCCCCCE
Confidence 8999999999999999999999999999999998666654 3699999554 7899999999999999
Q ss_pred EEEEEecccc
Q 040719 124 LQFSRHMSLD 133 (205)
Q Consensus 124 L~Fk~rl~~~ 133 (205)
|++..++...
T Consensus 67 i~l~~~~~gG 76 (98)
T 1yx5_B 67 LHLVLRLRGG 76 (98)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEeCCCC
Confidence 9999887654
No 27
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.44 E-value=3.5e-13 Score=97.72 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=66.0
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
..|+|+|+..+|+.+.++|+.++||++||+.|+.....+++. | .|+|.|+ .++|+.+|.+|||++|
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~--q-----------rL~~~Gk-~L~D~~tL~~~~I~~g 68 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL--F-----------WLTFEGK-PLEDQLPLGEYGLKPL 68 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTT--E-----------EEESSSS-CCCTTSBHHHHHCSTT
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhH--E-----------EEEECCE-ECCCCCcHHHcCCCCC
Confidence 369999999999999999999999999999999998766664 3 5999994 5578999999999999
Q ss_pred CEEEEEEecccc
Q 040719 122 DELQFSRHMSLD 133 (205)
Q Consensus 122 d~L~Fk~rl~~~ 133 (205)
++|+++.++...
T Consensus 69 ~~i~l~~~~~gg 80 (88)
T 2hj8_A 69 STVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEC----
T ss_pred CEEEEEEEcCCC
Confidence 999999887654
No 28
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.44 E-value=7.2e-13 Score=100.65 Aligned_cols=77 Identities=17% Similarity=0.347 Sum_probs=68.6
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
.+|+|+|+..+|+.|.|.|+.++||.+||+.|+..+..+++. ..|+|.| +++.|+.+|.+|||++|
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-------------QrLi~~G-k~L~D~~tL~~~gI~~g 99 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ-------------QRLIFAG-KQLEDGRTLSDYNIQKE 99 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG-------------EEEEETT-EECCTTSBTTTTTCCTT
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHH-------------EEEEECC-EECCCCCcHHHCCCCCC
Confidence 379999999999999999999999999999999998766664 3699999 55578899999999999
Q ss_pred CEEEEEEeccc
Q 040719 122 DELQFSRHMSL 132 (205)
Q Consensus 122 d~L~Fk~rl~~ 132 (205)
++|+++.|+..
T Consensus 100 s~I~l~~rl~G 110 (111)
T 3vdz_A 100 STLHLVLRLRG 110 (111)
T ss_dssp CEEEEEECCCC
T ss_pred CEEEEEEecCC
Confidence 99999998764
No 29
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.43 E-value=4.9e-13 Score=93.95 Aligned_cols=76 Identities=13% Similarity=0.301 Sum_probs=67.3
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
.|+|+|+..+|+.+.++|..+.||.+||++|+.....+++. ..|+|+|+.| .|+.+|.+|||++|+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~-------------qrL~~~G~~L-~d~~tl~~~~i~~~~ 68 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS-------------LRFLFEGQRI-ADNHTPKELGMEEED 68 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGG-------------EEEEETTEEC-CTTCCHHHHTCCTTE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCccc-------------EEEEECCEEe-CCCCCHHHcCCCCCC
Confidence 59999999999999999999999999999999998666653 4699999665 788999999999999
Q ss_pred EEEEEEeccc
Q 040719 123 ELQFSRHMSL 132 (205)
Q Consensus 123 ~L~Fk~rl~~ 132 (205)
+|++..++..
T Consensus 69 ~i~l~~~~~G 78 (79)
T 2uyz_B 69 VIEVYQEQTG 78 (79)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEeccC
Confidence 9999988753
No 30
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=97.73 Aligned_cols=86 Identities=12% Similarity=0.250 Sum_probs=67.1
Q ss_pred cCCCccccC-CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCc
Q 040719 32 RTMPYLKLP-QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDK 110 (205)
Q Consensus 32 ~~~s~~al~-~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ 110 (205)
++-.....+ ...|+|+|+.. |..+.|+|+.++||++||+.|+.....+++. ..|+|.|+ +++|+
T Consensus 13 ~~~~~~~~~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-------------qrLi~~Gk-~L~D~ 77 (101)
T 2klc_A 13 GRENLYFQGHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQ-------------LVLIFAGK-ILKDQ 77 (101)
T ss_dssp ----------CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGG-------------EEEEETTE-EECTT
T ss_pred cccccccCCCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhh-------------EEEEECCE-ECCCc
Confidence 343444444 46899999888 8999999999999999999999998766654 35999995 45789
Q ss_pred chhcccCCCCCCEEEEEEeccc
Q 040719 111 THIRDFRMKDGDELQFSRHMSL 132 (205)
Q Consensus 111 ktLsdyGIkDGd~L~Fk~rl~~ 132 (205)
.+|.+|||++|++|+++.+...
T Consensus 78 ~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 78 DTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCTGGGTCCTTCEEEEEECCSS
T ss_pred CcHHHcCCCCCCEEEEEEcCCC
Confidence 9999999999999999988754
No 31
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.40 E-value=4.9e-13 Score=100.87 Aligned_cols=75 Identities=19% Similarity=0.357 Sum_probs=64.6
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+..+|+.|.|+|+.+.||.+||+.|+.....+++. | .|+|.| +++.|+.+|.+|||++|++
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~--Q-----------rLi~~G-k~L~D~~tL~~~~i~~g~~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQ--I-----------KLIYSG-KVLQDSKTVSECGLKDGDQ 67 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGG--C-----------EEEETT-EECCTTSBTTTTTCCTTCE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhh--E-----------EEEECC-EECCCcCCHHHcCCCCCCE
Confidence 8999999999999999999999999999999998766654 3 599999 5558899999999999999
Q ss_pred EEEEEeccc
Q 040719 124 LQFSRHMSL 132 (205)
Q Consensus 124 L~Fk~rl~~ 132 (205)
|+++.+-..
T Consensus 68 i~lv~~~~~ 76 (106)
T 3m62_B 68 VVFMVSQKK 76 (106)
T ss_dssp EEEECCC--
T ss_pred EEEEEcCCC
Confidence 999987554
No 32
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=1.7e-12 Score=97.50 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=68.6
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+..|+|+|+..+|+.+.+.|+.++||++||..|+.....+++. | .|+|.|+ .+.|+.+|.+|||++
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~--q-----------rLi~~Gk-~L~D~~tL~~ygI~~ 86 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGS--Q-----------RWFFSGR-PLTDKMKFEELKIPK 86 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTT--C-----------EEEETTE-ECCTTSHHHHCCCSS
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCccc--E-----------EEEECCE-ECCCCCcHHHcCCCC
Confidence 4579999999999999999999999999999999987666654 3 5999995 557899999999999
Q ss_pred CCEEEEEEecccc
Q 040719 121 GDELQFSRHMSLD 133 (205)
Q Consensus 121 Gd~L~Fk~rl~~~ 133 (205)
|++|+++.+....
T Consensus 87 g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 87 DYVVQVIVSQPVQ 99 (106)
T ss_dssp SCEEEEECCCSSC
T ss_pred CCEEEEEEeCCCC
Confidence 9999999876544
No 33
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.10 E-value=2.7e-14 Score=99.29 Aligned_cols=75 Identities=7% Similarity=0.181 Sum_probs=65.6
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+..+|+.+.++|+.++||++||+.|+.....+++. + .|+|.|+. ++|+.+|.+|||++|++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~--q-----------rL~~~gk~-L~d~~tL~~~~i~~g~~ 66 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQ--L-----------RVIFAGKE-LPNHLTVQNCDLEQQSI 66 (76)
Confidence 8999999999999999999999999999999987666654 2 58899954 57889999999999999
Q ss_pred EEEEEeccc
Q 040719 124 LQFSRHMSL 132 (205)
Q Consensus 124 L~Fk~rl~~ 132 (205)
|+++.|+..
T Consensus 67 i~l~~rlrg 75 (76)
T 3b1l_X 67 VHIVQRPRR 75 (76)
Confidence 999988753
No 34
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.39 E-value=1.3e-12 Score=96.71 Aligned_cols=78 Identities=13% Similarity=0.287 Sum_probs=68.7
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
...|+|+|+..+|+.+.+.|..+.||.+||++|+.....+++. ..|+|+|+.| .|+.+|.+|||++
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~-------------qrLif~Gk~L-~d~~tl~dy~i~~ 84 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS-------------LRFLFEGQRI-ADNHTPKELGMEE 84 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGG-------------EEEEETTEEC-CTTCCHHHHTCCT
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhh-------------EEEEECCeEc-CCCCCHHHCCCCC
Confidence 4569999999999999999999999999999999998666653 4699999655 7889999999999
Q ss_pred CCEEEEEEeccc
Q 040719 121 GDELQFSRHMSL 132 (205)
Q Consensus 121 Gd~L~Fk~rl~~ 132 (205)
|++|+++.++..
T Consensus 85 g~~I~l~~~~~G 96 (97)
T 1wyw_B 85 EDVIEVYQEQTG 96 (97)
T ss_dssp TCEEEEEESSSC
T ss_pred CCEEEEEEecCC
Confidence 999999988753
No 35
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.39 E-value=3.9e-12 Score=97.59 Aligned_cols=78 Identities=17% Similarity=0.371 Sum_probs=68.8
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
.+.|.|+|+..+|+.+.++|+.++||++||+.|+.....+++. ..|+|.|+.| +|+.+|.+|||++
T Consensus 74 ~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-------------qrL~~~g~~L-~d~~tL~~~~i~~ 139 (152)
T 3b08_A 74 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ-------------QRLIFAGKQL-EDGRTLSDYNIQK 139 (152)
T ss_dssp TTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG-------------EEEEETTEEC-CTTSBTGGGTCCT
T ss_pred ccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhh-------------EEEEECCEEC-CCCCCHHHcCCCC
Confidence 4579999999999999999999999999999999998666654 4699999555 7899999999999
Q ss_pred CCEEEEEEeccc
Q 040719 121 GDELQFSRHMSL 132 (205)
Q Consensus 121 Gd~L~Fk~rl~~ 132 (205)
|++|+++.|+..
T Consensus 140 ~~~i~l~~r~~G 151 (152)
T 3b08_A 140 ESTLHLVLRLRG 151 (152)
T ss_dssp TCEEEEEECCCC
T ss_pred CCEEEEEEecCC
Confidence 999999998764
No 36
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=1.4e-12 Score=95.16 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=65.5
Q ss_pred CCeEEEEEecCCc--EEEEEeCCCCcHHHHHHHHHHHh--ccCCCCCCCcccccccccceEEeeCCeeecCCcchhccc-
Q 040719 42 PRIRLSVLKLDGS--RFDVYIERNATVGELRQAIEEVF--TLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDF- 116 (205)
Q Consensus 42 ~aMkLtVrkldGs--~f~V~V~~sATV~DLKkAI~~~f--~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdy- 116 (205)
..|+|+|+..+|. .+.|+|+.++||++||+.|+..+ ..+++. | .|+|.| ++++|+.+|.+|
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~--Q-----------rLi~~G-k~L~D~~tL~~~~ 71 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPED--Q-----------RLIYSG-KLLLDHQCLRDLL 71 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTT--C-----------EEEETT-EECCSSSCHHHHS
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHH--e-----------EEEECC-EECcCcCCHHHHh
Confidence 4699999999998 56777779999999999999997 455554 3 599999 555788999999
Q ss_pred -CCCCCCEEEEEEecccc
Q 040719 117 -RMKDGDELQFSRHMSLD 133 (205)
Q Consensus 117 -GIkDGd~L~Fk~rl~~~ 133 (205)
||++|++||++.++...
T Consensus 72 ~~i~~~~~i~lv~~~~gg 89 (93)
T 1wgd_A 72 PKQEKRHVLHLVCNVKSG 89 (93)
T ss_dssp CSSSCSEEEEEECCCCCC
T ss_pred cCCCCCCEEEEEeCCCCC
Confidence 99999999999887654
No 37
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=2e-12 Score=96.74 Aligned_cols=78 Identities=18% Similarity=0.355 Sum_probs=67.5
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
...|+|+|+..+|+ +.|+|+.++||.+||+.|+.....+++. ..|+|.| ++++|+.+|.+|||++
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~-------------QrLi~~G-k~L~D~~tL~~ygI~~ 84 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQ-------------LVLIFAG-KILKDPDSLAQCGVRD 84 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGG-------------EEEEETT-EECCTTSBHHHHTCCT
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhh-------------EEEEECC-EECCCcCcHHHCCCCC
Confidence 35799999999886 7999999999999999999998766654 3599999 5557899999999999
Q ss_pred CCEEEEEEecccc
Q 040719 121 GDELQFSRHMSLD 133 (205)
Q Consensus 121 Gd~L~Fk~rl~~~ 133 (205)
|++|+++.++...
T Consensus 85 gstI~l~~r~~~~ 97 (100)
T 1yqb_A 85 GLTVHLVIKRQHR 97 (100)
T ss_dssp TCEEEEEECCCCS
T ss_pred CCEEEEEEcCCCC
Confidence 9999999887654
No 38
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.7e-12 Score=101.62 Aligned_cols=83 Identities=11% Similarity=0.193 Sum_probs=70.9
Q ss_pred cCCCCeEEEEE-ecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccC
Q 040719 39 LPQPRIRLSVL-KLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFR 117 (205)
Q Consensus 39 l~~~aMkLtVr-kldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyG 117 (205)
+....|+|.|+ ..+|..+.|+++.++||+|||.+|+..+..+++. .+|+|+| |+++|++||.+||
T Consensus 11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~-------------qrLIy~G-KiLKD~eTL~~~g 76 (118)
T 2daf_A 11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSV-------------LQIRYSG-KILKNNETLVQHG 76 (118)
T ss_dssp CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTT-------------EEEEETT-EEECSSCCHHHHS
T ss_pred ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHH-------------EEEEECC-eEcCCcchHHHcC
Confidence 33456889987 6678899999999999999999999999777765 4799999 5668999999999
Q ss_pred CCCCCEEEEEEecccccc
Q 040719 118 MKDGDELQFSRHMSLDYL 135 (205)
Q Consensus 118 IkDGd~L~Fk~rl~~~~~ 135 (205)
|++|.+||++++-...-.
T Consensus 77 Ik~g~TIhLvi~s~~p~~ 94 (118)
T 2daf_A 77 VKPQEIVQVEIFSTNPDL 94 (118)
T ss_dssp CCSSCEEEEEEEESCTTT
T ss_pred CCCCCEEEEEEecCCCcc
Confidence 999999999998765443
No 39
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.37 E-value=3.2e-12 Score=94.68 Aligned_cols=77 Identities=21% Similarity=0.275 Sum_probs=67.0
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCc-chhcccCCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDK-THIRDFRMKD 120 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~-ktLsdyGIkD 120 (205)
..|+|+|+...| .+.|+|+.++||++||+.|+.....+++. | .|+|.|+.| .|+ .+|.+|||++
T Consensus 14 ~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~--Q-----------rLi~~Gk~L-~D~~~tL~~ygI~~ 78 (94)
T 2kan_A 14 RKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKR--M-----------QLYYSGIEL-ADDYRNLNEYGITE 78 (94)
T ss_dssp CCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTT--E-----------EEEETTEEE-CCTTSBHHHHTCCT
T ss_pred CCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHH--E-----------EEEECCEEC-CCCcccHHHCCCCC
Confidence 469999999888 89999999999999999999998776664 3 599999555 677 9999999999
Q ss_pred CCEEEEEEecccc
Q 040719 121 GDELQFSRHMSLD 133 (205)
Q Consensus 121 Gd~L~Fk~rl~~~ 133 (205)
|++|+++.++...
T Consensus 79 gstl~lv~r~~gg 91 (94)
T 2kan_A 79 FSEIVVFLKSINR 91 (94)
T ss_dssp TEEEEEEECCCSS
T ss_pred CCEEEEEEeCCCC
Confidence 9999999988653
No 40
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=2e-12 Score=96.49 Aligned_cols=81 Identities=15% Similarity=0.257 Sum_probs=67.7
Q ss_pred CeEEEEEecCC----cEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCC
Q 040719 43 RIRLSVLKLDG----SRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRM 118 (205)
Q Consensus 43 aMkLtVrkldG----s~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGI 118 (205)
.|+|+|+...+ +.|.|+|+.++||++||+.|+..+..+++. | .|+|.|+.|.+|..+|.+|||
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~--q-----------rL~~~gk~L~D~~~tL~~ygI 73 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEE--A-----------QIVYMEQLLTDDHCSLGSYGL 73 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGG--B-----------CEEETTEEECCSSSBHHHHTC
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHH--e-----------EEEECCEECCCCcccHHHCCC
Confidence 59999988654 689999999999999999999998777664 3 489999766555579999999
Q ss_pred CCCCEEEEEEeccccccc
Q 040719 119 KDGDELQFSRHMSLDYLH 136 (205)
Q Consensus 119 kDGd~L~Fk~rl~~~~~~ 136 (205)
++|++|+++.+....-++
T Consensus 74 ~~g~~l~l~~~~~gg~~~ 91 (102)
T 1v5o_A 74 KDGDMVVLLQKDNVGLRT 91 (102)
T ss_dssp CTTEEEEECBCCCCCCSS
T ss_pred CCCCEEEEEECCCCCCCC
Confidence 999999999887666443
No 41
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.36 E-value=2.2e-12 Score=94.86 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=64.3
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
...|+|+|+. |+.+.++|+.++||++||+.|++....+++. | .|+|.|+. ++|+.+|.+|||++
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~--q-----------rLi~~Gk~-L~D~~tL~~y~I~~ 80 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPED--Q-----------VVLLAGAP-LEDEATLGQCGVEA 80 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGG--C-----------EEEETTEE-CCTTSBHHHHTCCS
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhH--E-----------EEEECCEE-CCCCCcHHHCCCCC
Confidence 4569999977 8999999999999999999999998766664 3 59999955 57899999999999
Q ss_pred CCEEEEEEeccc
Q 040719 121 GDELQFSRHMSL 132 (205)
Q Consensus 121 Gd~L~Fk~rl~~ 132 (205)
|++|+++.|+..
T Consensus 81 gstI~lv~rl~G 92 (93)
T 2l7r_A 81 LTTLEVAGRMLG 92 (93)
T ss_dssp SCEEEEECCCCC
T ss_pred CCEEEEEEecCC
Confidence 999999988753
No 42
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=8.3e-12 Score=97.34 Aligned_cols=79 Identities=15% Similarity=0.305 Sum_probs=65.5
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
...|+|+|+.. |+.+.|+|+.+.||.+||+.|+..+..+++. ..|+|.|+. ++|+.+|.+|||++
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-------------QrLi~~Gk~-L~D~~tL~dygI~~ 94 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQ-------------LVLIFAGKI-LKDQDTLIQHGIHD 94 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSS-------------EEEEETTEE-ESTTSCGGGTTCSS
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcce-------------EEEEECCEE-cCCCCCHHHcCCCC
Confidence 35799999988 9999999999999999999999998766654 359999954 57889999999999
Q ss_pred CCEEEEEEeccccc
Q 040719 121 GDELQFSRHMSLDY 134 (205)
Q Consensus 121 Gd~L~Fk~rl~~~~ 134 (205)
|++|+++.++....
T Consensus 95 gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 95 GLTVHLVIKRDPNS 108 (125)
T ss_dssp SEEEEEEEC-----
T ss_pred CCEEEEEeccCCCC
Confidence 99999999886553
No 43
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.36 E-value=1.8e-12 Score=99.29 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=63.7
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
.|.|+|+.+.|+.+.|+|++++||++||+.|+.+...++++ | +|+|.| +.++|+.+|.+|||++|+
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~q--Q-----------rLi~~G-k~L~D~~TL~dygI~~gs 93 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNK--I-----------VLKKWY-TIFKDHVSLGDYEIHDGM 93 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGG--C-----------EEEETT-EECCSSCBHHHHTCCTTE
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHH--E-----------EEEECC-EECCCCCCHHHcCCCCCC
Confidence 49999999999999999999999999999999998777665 3 699999 555889999999999999
Q ss_pred EEEEE
Q 040719 123 ELQFS 127 (205)
Q Consensus 123 ~L~Fk 127 (205)
+|++.
T Consensus 94 tlhL~ 98 (100)
T 1uh6_A 94 NLELY 98 (100)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99875
No 44
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.35 E-value=2.7e-12 Score=93.83 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=64.6
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCc-chhcccCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDK-THIRDFRMK 119 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~-ktLsdyGIk 119 (205)
...|+|+|+..+|+.+.|+|+.+.||++||+.|+... ++. | .|+|.|+.| .|+ .+|.+|||+
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~--q-----------rLi~~Gk~L-~D~~~tL~~y~i~ 67 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQ--M-----------KLIYQGRLL-QDPARTLSSLNIT 67 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTT--C-----------EEEETTEEC-CCSSCBTTTTTCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCc--E-----------EEEECCEEc-cCCcCCHHHcCCC
Confidence 3579999999999999999999999999999999875 332 3 599999555 556 999999999
Q ss_pred CCCEEEEEEecccc
Q 040719 120 DGDELQFSRHMSLD 133 (205)
Q Consensus 120 DGd~L~Fk~rl~~~ 133 (205)
+|++||++.+....
T Consensus 68 ~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 68 NNCVIHCHRSPPGA 81 (95)
T ss_dssp TTEEEEEECCCCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999876543
No 45
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.35 E-value=3.5e-12 Score=95.44 Aligned_cols=79 Identities=18% Similarity=0.354 Sum_probs=67.6
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
..|+|+|+..+|+ +.|+|+.+.||.+||+.|+..+..+++. ..|+|.| ++++|+.+|.+|||++|
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~-------------qrLi~~G-k~L~D~~tL~~~gi~~g 80 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQ-------------LVLIFAG-KILKDPDSLAQCGVRDG 80 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTT-------------EEEEETT-EECCTTSCHHHHTCCTT
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhh-------------EEEEECC-EECCCcCcHHHcCCCCC
Confidence 4699999998886 7999999999999999999998766654 3589999 55578999999999999
Q ss_pred CEEEEEEecccccc
Q 040719 122 DELQFSRHMSLDYL 135 (205)
Q Consensus 122 d~L~Fk~rl~~~~~ 135 (205)
++|+++.++...-.
T Consensus 81 ~~i~l~~~~~~~~~ 94 (106)
T 1wx7_A 81 LTVHLVIKRQHRAM 94 (106)
T ss_dssp EEEEEEECCCCCSC
T ss_pred CEEEEEEcCCCCCC
Confidence 99999998775543
No 46
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.35 E-value=3.6e-12 Score=96.35 Aligned_cols=76 Identities=16% Similarity=0.299 Sum_probs=61.8
Q ss_pred CCCCeEEEEEecCCcEEEE--EeCCCCcHHHHHHHH-HHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhccc
Q 040719 40 PQPRIRLSVLKLDGSRFDV--YIERNATVGELRQAI-EEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDF 116 (205)
Q Consensus 40 ~~~aMkLtVrkldGs~f~V--~V~~sATV~DLKkAI-~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdy 116 (205)
....|+|+|+.++|+.|.+ +|+.++||++||+.| +.....+++. | .|+|.| +++.|+.+|++|
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~--Q-----------rLi~~G-k~L~D~~tL~dy 81 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISE--I-----------KLLLKG-KVLHDNLFLSDL 81 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGG--E-----------EEEETT-EEECTTCBGGGS
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhh--E-----------EEEECC-EECcCcCCHHHc
Confidence 4568999999999998777 566999999999999 6654444443 3 599999 555889999999
Q ss_pred CC-CCCCEEEEEEe
Q 040719 117 RM-KDGDELQFSRH 129 (205)
Q Consensus 117 GI-kDGd~L~Fk~r 129 (205)
|| ++|++|++...
T Consensus 82 ~I~~~g~ti~lmvs 95 (98)
T 4a20_A 82 KVTPANSTITVMIK 95 (98)
T ss_dssp CCBTTBCEEEEEEC
T ss_pred CcCCCCCEEEEEEe
Confidence 99 99999999864
No 47
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.34 E-value=4.7e-12 Score=95.42 Aligned_cols=83 Identities=19% Similarity=0.235 Sum_probs=67.6
Q ss_pred cccCCCCeEEEEEecCC---cEEEEEeCC---------CCcHHHHHHHHHHHh--ccCCCCCCCcccccccccceEEeeC
Q 040719 37 LKLPQPRIRLSVLKLDG---SRFDVYIER---------NATVGELRQAIEEVF--TLSPTEGQGKISWTNVWGHFCLCYD 102 (205)
Q Consensus 37 ~al~~~aMkLtVrkldG---s~f~V~V~~---------sATV~DLKkAI~~~f--~~~pe~g~qkISW~~VWk~fcLi~~ 102 (205)
..++...|+|+|+..++ ..|.|+|+. ++||.+||+.|+... ..+++.. ..|+|.
T Consensus 6 ~~~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~------------qrLi~~ 73 (107)
T 1x1m_A 6 SGMSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPEL------------IDLIYC 73 (107)
T ss_dssp CCCCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSS------------EEEEET
T ss_pred CCccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhc------------EEEEEC
Confidence 34566679999999999 889999655 599999999999987 5554420 259999
Q ss_pred CeeecCCcchhcccCCCCCCEEEEEEeccc
Q 040719 103 GRKLVNDKTHIRDFRMKDGDELQFSRHMSL 132 (205)
Q Consensus 103 G~KLldD~ktLsdyGIkDGd~L~Fk~rl~~ 132 (205)
|+.| +|+.+|.+|||++|++|+++.+...
T Consensus 74 Gk~L-~D~~tL~~y~i~~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 74 GRKL-KDDQTLDFYGIQPGSTVHVLRKSWS 102 (107)
T ss_dssp TEEC-CTTCBHHHHTCCTTCEEEEEESSCC
T ss_pred CeEC-CCCCcHHHcCCCCCCEEEEEeCCCC
Confidence 9555 7889999999999999999987654
No 48
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=8.8e-12 Score=95.36 Aligned_cols=81 Identities=14% Similarity=0.338 Sum_probs=72.0
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
++..+|.|+.++|+.+.++|+.++||++||+.|+.....+++. ..|+|.|+. ++|+.+|.+|||++
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-------------qrLi~~Gk~-L~D~~tL~~ygI~~ 72 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ-------------QRLIWAGKQ-LEDGRTLSDYNIQR 72 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGG-------------EEEEETTEE-CCTTCBTTTTTCCS
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHH-------------EEEEECCEE-CCCCCcHHHCCCCC
Confidence 5789999999999999999999999999999999998776664 359999954 57899999999999
Q ss_pred CCEEEEEEecccccc
Q 040719 121 GDELQFSRHMSLDYL 135 (205)
Q Consensus 121 Gd~L~Fk~rl~~~~~ 135 (205)
|++|+++.++.....
T Consensus 73 gstI~l~~~~~GG~~ 87 (114)
T 2kdi_A 73 ESTLHLVLRLRGGSM 87 (114)
T ss_dssp SCEEEEEECCCSSCC
T ss_pred CCEEEEEEEcCCCce
Confidence 999999999887654
No 49
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.33 E-value=4.1e-12 Score=95.97 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=69.2
Q ss_pred CCCeEEEEEec---CCcEEEEEeCC-CCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhccc
Q 040719 41 QPRIRLSVLKL---DGSRFDVYIER-NATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDF 116 (205)
Q Consensus 41 ~~aMkLtVrkl---dGs~f~V~V~~-sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdy 116 (205)
.+.|+|+|+.. +|+.+.++|+. ++||.+||+.|+..+..+++. | .|+|.| ++++|+.+|.+|
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~--Q-----------rL~~~G-k~L~D~~tL~~y 90 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANK--Q-----------KLSGKA-GFLKDNMSLAHY 90 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTT--S-----------EEECSS-SBCCTTSBTTTT
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHH--e-----------EEEECC-EECCCCCcHHHC
Confidence 35799999888 88999999998 999999999999998777664 3 589999 566889999999
Q ss_pred CCCCCCEEEEEEecccc
Q 040719 117 RMKDGDELQFSRHMSLD 133 (205)
Q Consensus 117 GIkDGd~L~Fk~rl~~~ 133 (205)
||++|++|+++.++...
T Consensus 91 ~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 91 NVGAGEILTLSLRERSG 107 (111)
T ss_dssp TCSSSCEEEEECSSCCS
T ss_pred CCCCCCEEEEEEEcCCC
Confidence 99999999999888654
No 50
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.32 E-value=8.5e-12 Score=101.56 Aligned_cols=76 Identities=16% Similarity=0.392 Sum_probs=68.2
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+.++|+.+.|+|+.++||.+||+.|+.....+++. | .|+|.|+. ++|+.+|.+|||++|++
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~--Q-----------rLi~~Gk~-L~D~~tL~~y~I~~gst 66 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ--Q-----------RLIFAGKQ-LEDGRTLSDYNIQKEST 66 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTT--E-----------EEEETTEE-CCTTSBGGGGTCCTTCE
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHH--E-----------EEEECCcc-ccCcCcHHHcCCCCCCE
Confidence 8999999999999999999999999999999998777765 3 59999955 58899999999999999
Q ss_pred EEEEEecccc
Q 040719 124 LQFSRHMSLD 133 (205)
Q Consensus 124 L~Fk~rl~~~ 133 (205)
||++.|+...
T Consensus 67 I~Lvlrl~GG 76 (169)
T 3l0w_B 67 LHLVLRLRGG 76 (169)
T ss_dssp EEEEECCCC-
T ss_pred EEEEEEeccc
Confidence 9999998765
No 51
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.32 E-value=9.8e-12 Score=95.35 Aligned_cols=76 Identities=16% Similarity=0.376 Sum_probs=67.3
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+..+|+.+.++|+.++||++||++|+..+..+++. ..|+|.|+. ++|+.+|.+|||++|++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-------------q~L~~~g~~-L~d~~tL~~~~i~~~~~ 66 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ-------------QRLIFAGKQ-LEDGRTLSDYNIQKEST 66 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGG-------------EEEEETTEE-CCTTSBTGGGTCCTTCE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHH-------------eEEEECCeE-CcCcccHHHhccCCCCe
Confidence 8999999999999999999999999999999998776664 358999955 47899999999999999
Q ss_pred EEEEEecccc
Q 040719 124 LQFSRHMSLD 133 (205)
Q Consensus 124 L~Fk~rl~~~ 133 (205)
|+++.+....
T Consensus 67 l~l~~~~~~~ 76 (152)
T 3b08_A 67 LHLVLRLRGG 76 (152)
T ss_dssp EEEEECCTTC
T ss_pred eEEEeecccc
Confidence 9999987554
No 52
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.30 E-value=1.4e-11 Score=98.39 Aligned_cols=86 Identities=16% Similarity=0.303 Sum_probs=71.0
Q ss_pred ccccCCCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcc
Q 040719 36 YLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRD 115 (205)
Q Consensus 36 ~~al~~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsd 115 (205)
.-..+...|+|+|+..+|+.+.|+|+.++||.+||+.|+.....+++. | .|+|.| +.++|+.+|.+
T Consensus 13 ~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~--Q-----------rL~~~g-~~L~d~~tL~~ 78 (172)
T 3u30_A 13 GLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ--Q-----------RLIFAG-KQLEDGRTLSD 78 (172)
T ss_dssp ------CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGG--E-----------EEEETT-EECCTTCBTGG
T ss_pred CCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHH--E-----------EEEECC-ccccccCCHhH
Confidence 333445789999999999999999999999999999999998777664 3 589999 55588999999
Q ss_pred cCCCCCCEEEEEEecccccc
Q 040719 116 FRMKDGDELQFSRHMSLDYL 135 (205)
Q Consensus 116 yGIkDGd~L~Fk~rl~~~~~ 135 (205)
|||++|++|+++.++.....
T Consensus 79 ~~i~~~~~l~l~~~~~gg~~ 98 (172)
T 3u30_A 79 YNIQKESTLHLVLRLRGGMQ 98 (172)
T ss_dssp GTCCTTCEEEEEECCCCCEE
T ss_pred cCCcccceeeeeeccccccc
Confidence 99999999999998876544
No 53
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=1.5e-11 Score=89.39 Aligned_cols=77 Identities=18% Similarity=0.326 Sum_probs=64.3
Q ss_pred CCeEEEEEecCCcEEEEEeCCC-----CcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhccc
Q 040719 42 PRIRLSVLKLDGSRFDVYIERN-----ATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDF 116 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~s-----ATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdy 116 (205)
..|+|+|+. .|+.+.|+|+.+ +||.+||+.|+.....+++. | .|+|.|+.|.+++.+|.+|
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~--q-----------rL~~~Gk~L~D~~~~L~~~ 71 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSF--Q-----------KLIFKGKSLKEMETPLSAL 71 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTT--C-----------EEEETTEEECCSSSBHHHH
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHH--E-----------EEEECCeecCCCcccHHHC
Confidence 369999976 588999999885 99999999999998767665 3 5999997665557799999
Q ss_pred CCCCCCEEEEEEeccc
Q 040719 117 RMKDGDELQFSRHMSL 132 (205)
Q Consensus 117 GIkDGd~L~Fk~rl~~ 132 (205)
||++|++|+++.+...
T Consensus 72 ~i~~g~~i~l~~~~~~ 87 (92)
T 1wxv_A 72 GIQDGCRVMLIGKKNS 87 (92)
T ss_dssp TCCSSEEEEEESCCSC
T ss_pred CCCCCCEEEEEecCCC
Confidence 9999999999875544
No 54
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.29 E-value=1.2e-11 Score=98.82 Aligned_cols=102 Identities=17% Similarity=0.307 Sum_probs=75.4
Q ss_pred cccCCCCcCCcCCCccccCCCccccC-CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCccccccc
Q 040719 15 TLDDVDDVGDCYEGNSVRTMPYLKLP-QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNV 93 (205)
Q Consensus 15 ~~~d~~~~~~~~~~~~~~~~s~~al~-~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~V 93 (205)
.|+|.....+|. +.-+..-+.-+. .+.|.|.|+..+|+.+.+.|..+.||.+||+.|+.....+++. |
T Consensus 69 ~L~d~~tL~~~~--i~~~~~l~l~~~~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~--q------- 137 (172)
T 3u30_A 69 QLEDGRTLSDYN--IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ--Q------- 137 (172)
T ss_dssp ECCTTCBTGGGT--CCTTCEEEEEECCCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGG--C-------
T ss_pred cccccCCHhHcC--CcccceeeeeecccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCcee--E-------
Confidence 345544444442 333332233333 4679999999999999999999999999999999998766664 3
Q ss_pred ccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEeccc
Q 040719 94 WGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSL 132 (205)
Q Consensus 94 Wk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~~ 132 (205)
+|+|.|+ .++|+.+|.+|||++|++|+++.|+..
T Consensus 138 ----~L~~~g~-~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 138 ----RLIFAGK-QLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp ----CEEETTE-ECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ----EEEECCc-cCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 5999995 457899999999999999999988754
No 55
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=1.1e-11 Score=95.02 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=61.1
Q ss_pred EEEEEecC----CcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 45 RLSVLKLD----GSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 45 kLtVrkld----Gs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+|.|+..+ ++.++|+|+.++||.+||+.|+.++..+++. | +|||+| |+++|+.||.+|||++
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~q--Q-----------rLI~~G-KiL~D~~TL~~y~I~~ 82 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENY--I-----------KIVINK-KQLQLGKTLEEQGVAH 82 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTT--C-----------EEEETT-EECCTTSBHHHHTCCS
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHH--e-----------EEEeCC-eECCCCCcHHHcCCCC
Confidence 77777777 7789999999999999999999998776664 3 699999 6668999999999999
Q ss_pred CCEEEEEEecc
Q 040719 121 GDELQFSRHMS 131 (205)
Q Consensus 121 Gd~L~Fk~rl~ 131 (205)
|++| ++-++.
T Consensus 83 gsti-~vl~lr 92 (100)
T 1wju_A 83 NVKA-MVLELK 92 (100)
T ss_dssp SEEE-EEECCC
T ss_pred CCEE-EEEEEC
Confidence 9999 444443
No 56
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.27 E-value=4.8e-13 Score=108.34 Aligned_cols=96 Identities=14% Similarity=0.275 Sum_probs=6.3
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|.|+|+.++|+.+.|+|+.++||++||+.|+..+..+++. | .|+|.|. .+.|+.+|.+|||.+|++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~--Q-----------rLi~~Gk-~L~D~~tL~dygI~~gst 66 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ--Q-----------RLIFAGK-QLEDGRTLSDYNIQKEST 66 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHH--E-----------EEEECCE-EccccCcHHHcCCCCCCE
Confidence 8899999999999999999999999999999998776664 3 4899995 457899999999999999
Q ss_pred EEEEEecccccccccc-ccccccccccceee
Q 040719 124 LQFSRHMSLDYLHSKR-RSKTQNVACQQFSR 153 (205)
Q Consensus 124 L~Fk~rl~~~~~~~~~-~~~~~~~~~~~~~~ 153 (205)
|+++.|+...--.++| ...++..+-|.+.-
T Consensus 67 L~Lvlrl~GGgKkrkKk~~t~Pkk~~~~~~~ 97 (152)
T 3u5c_f 67 LHLVLRLRGGGKKRKXXXXXXXXXXXXXXXX 97 (152)
T ss_dssp ---------------CCCCCCCSCCCCCCCC
T ss_pred EEEEeeccCCCcCcccccccccccccccccc
Confidence 9999999987443332 23334445554443
No 57
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.27 E-value=2.4e-11 Score=88.11 Aligned_cols=72 Identities=17% Similarity=0.417 Sum_probs=61.1
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
+.+.+ +++.+|+.+.|+|+.++||++||+.|+.....+++. | .|+|.|+ .++|+.+|.+|||++|
T Consensus 11 ~~~~~-~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~--q-----------rL~~~Gk-~L~D~~tL~~~gi~~g 75 (85)
T 2kd0_A 11 STIKL-TVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRG--Q-----------KLIFKGK-VLVETSTLKQSDVGSG 75 (85)
T ss_dssp CCEEE-EEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTT--C-----------EEEETTE-ECCTTCBTTTTTCCTT
T ss_pred CcEEE-EEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHH--E-----------EEEECCe-ECCCcCCHHHCCCCCC
Confidence 45555 448899999999999999999999999998777765 3 5889994 5588999999999999
Q ss_pred CEEEEEE
Q 040719 122 DELQFSR 128 (205)
Q Consensus 122 d~L~Fk~ 128 (205)
++|+++.
T Consensus 76 ~~l~l~~ 82 (85)
T 2kd0_A 76 AKLMLMA 82 (85)
T ss_dssp EEEEEEC
T ss_pred CEEEEEE
Confidence 9998864
No 58
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.27 E-value=3.7e-12 Score=95.65 Aligned_cols=72 Identities=17% Similarity=0.457 Sum_probs=62.1
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
.|+|+|+. +|+.|.|+|+.++||++||+.|+.....+++. | .|+|+| ++++|+.+|.+|||++|+
T Consensus 28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~--Q-----------rLi~~G-k~L~D~~tL~~~gI~~g~ 92 (101)
T 3m63_B 28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVAN--Q-----------RLIYSG-KILKDDQTVESYHIQDGH 92 (101)
T ss_dssp -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTT--C-----------CEEETT-EECCTTSBTTTTTCCTTE
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHH--E-----------EEEECC-EECCCcCcHHHCCCCCCC
Confidence 57888876 89999999999999999999999998777665 3 489999 555889999999999999
Q ss_pred EEEEEEe
Q 040719 123 ELQFSRH 129 (205)
Q Consensus 123 ~L~Fk~r 129 (205)
+|+++.+
T Consensus 93 tI~lv~~ 99 (101)
T 3m63_B 93 SVHLVKS 99 (101)
T ss_dssp EEEECCC
T ss_pred EEEEEeC
Confidence 9998764
No 59
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=9.9e-12 Score=91.65 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=59.2
Q ss_pred CeEEEEEecCCcEE--EE-EeCCCCcHHHHHHHHHHHh-ccCCCCCCCcccccccccceEEee--CCeeecCCcchhccc
Q 040719 43 RIRLSVLKLDGSRF--DV-YIERNATVGELRQAIEEVF-TLSPTEGQGKISWTNVWGHFCLCY--DGRKLVNDKTHIRDF 116 (205)
Q Consensus 43 aMkLtVrkldGs~f--~V-~V~~sATV~DLKkAI~~~f-~~~pe~g~qkISW~~VWk~fcLi~--~G~KLldD~ktLsdy 116 (205)
.|+|+|+.+.|+.+ .| +|++++||++||+.|++.. ..++++ | .|+| .| +.++|+.+|.+|
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~--Q-----------rL~~~~~G-k~L~D~~tL~~y 75 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPAR--Q-----------SLRLDPKG-KSLKDEDVLQKL 75 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTT--C-----------CEESSTTS-CCCCTTCBTTTS
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHH--e-----------EEEecCCC-cCcCCCCCHHHc
Confidence 49999999998875 58 8999999999999999964 445554 3 2555 48 556889999999
Q ss_pred CCCCCCEEEEEE
Q 040719 117 RMKDGDELQFSR 128 (205)
Q Consensus 117 GIkDGd~L~Fk~ 128 (205)
||++|++|+|+.
T Consensus 76 ~i~~~stl~~KD 87 (88)
T 2dzj_A 76 PVGTTATLYFRD 87 (88)
T ss_dssp SCCSEEEEEECC
T ss_pred CCCCCCEEEEEe
Confidence 999999999973
No 60
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.26 E-value=1.2e-11 Score=93.57 Aligned_cols=74 Identities=19% Similarity=0.307 Sum_probs=60.0
Q ss_pred CCCeEEEEEecCCc--EEEEEeCCCCcHHHHHHHHHHHhc-cCCCCCCCcccccccccceEEeeCCeeecCCcchhccc-
Q 040719 41 QPRIRLSVLKLDGS--RFDVYIERNATVGELRQAIEEVFT-LSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDF- 116 (205)
Q Consensus 41 ~~aMkLtVrkldGs--~f~V~V~~sATV~DLKkAI~~~f~-~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdy- 116 (205)
...|+|+|+..+|+ .+.|+|+.++||++||+.|+..+. .+|... | .|+|.| |++.|+.+|.+|
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~-Q-----------rLIy~G-k~L~D~~tL~~y~ 87 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKD-Q-----------RLVYSG-RLLPDHLQLKDIL 87 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTT-C-----------CEEETT-EEECTTSBTHHHH
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhh-E-----------EEEECC-EECCCCCCHHHHh
Confidence 35799999999998 568888999999999999999763 343222 3 499999 555799999999
Q ss_pred -CCCCCCEEEEE
Q 040719 117 -RMKDGDELQFS 127 (205)
Q Consensus 117 -GIkDGd~L~Fk 127 (205)
||++|++|+++
T Consensus 88 ~~I~~~~tihLv 99 (99)
T 2kdb_A 88 RKQDEYHMVHLV 99 (99)
T ss_dssp TTTCSEEEEEEC
T ss_pred cCCCCCCEEEeC
Confidence 99999999874
No 61
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.26 E-value=2.2e-11 Score=101.97 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=73.4
Q ss_pred ccccCCCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcc
Q 040719 36 YLKLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRD 115 (205)
Q Consensus 36 ~~al~~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsd 115 (205)
|.-..+-.|.|+|+.++|+.+.|+|+.++||.+||+.|+.....+++. | .|+|.| ++++|+.+|.+
T Consensus 98 y~T~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~--Q-----------rLi~~G-k~L~D~~tL~d 163 (189)
T 3q3f_A 98 YKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ--Q-----------RLIFAG-KQLEDGRTLSD 163 (189)
T ss_dssp EEESCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG--C-----------CEEETT-EECCTTCBGGG
T ss_pred EEcccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHH--E-----------EEEECC-EECCCCCCHHH
Confidence 334446689999999999999999999999999999999998776664 3 489999 55578999999
Q ss_pred cCCCCCCEEEEEEecccccc
Q 040719 116 FRMKDGDELQFSRHMSLDYL 135 (205)
Q Consensus 116 yGIkDGd~L~Fk~rl~~~~~ 135 (205)
|||++|++|+++.|+.....
T Consensus 164 ygI~~gstI~LvlrlrGG~~ 183 (189)
T 3q3f_A 164 YNIQKESTLHLVLRLRGGGQ 183 (189)
T ss_dssp GTCCTTCEEEECCCCCCCCC
T ss_pred CCCCCCCEEEEEEEcCCCCc
Confidence 99999999999999876543
No 62
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.26 E-value=4.8e-13 Score=103.74 Aligned_cols=78 Identities=17% Similarity=0.379 Sum_probs=0.9
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+|+..+|+.+.|+|+.++||++||+.|+..+..+++. | .|+|.| +.++|+.+|.+|||++|++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~--Q-----------rLi~~G-k~L~D~~tL~~~~I~~gst 66 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ--Q-----------RLIFAG-KQLEDGRTLSDYNIQKEST 66 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHH--E-----------EEEECC-EECCCCCchhhhccCCCCE
Confidence 8899999999999999999999999999999998777764 3 488999 4558899999999999999
Q ss_pred EEEEEecccccc
Q 040719 124 LQFSRHMSLDYL 135 (205)
Q Consensus 124 L~Fk~rl~~~~~ 135 (205)
|+++.++.....
T Consensus 67 i~l~~rl~GG~~ 78 (128)
T 3u5e_m 67 LHLVLRLRGGII 78 (128)
T ss_dssp ----------CC
T ss_pred EEEEEEcCCCCC
Confidence 999999887653
No 63
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.26 E-value=2.6e-11 Score=92.27 Aligned_cols=73 Identities=18% Similarity=0.335 Sum_probs=63.9
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
.+-|.|.|+.+.|+++.|.|.++.||++||+.|+.+...+++. ..|+|.| +.++|..||.+|||.+
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~q-------------QrLif~G-k~LkD~~TL~dY~I~d 84 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNK-------------IVLQKGG-SVLKDHISLEDYEVHD 84 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGG-------------EEEEETT-EECCTTSBTGGGTCCT
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHH-------------EEEEeCC-EEccCcCCHHHcCCCC
Confidence 3468999999999999999999999999999999998777764 2599999 5568899999999999
Q ss_pred CCEEEEE
Q 040719 121 GDELQFS 127 (205)
Q Consensus 121 Gd~L~Fk 127 (205)
|++|++.
T Consensus 85 gstLhL~ 91 (93)
T 3plu_A 85 QTNLELY 91 (93)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9999864
No 64
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.25 E-value=2.7e-11 Score=95.06 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=65.5
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe-e-CCeeecCCcchhcccCCCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC-Y-DGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi-~-~G~KLldD~ktLsdyGIkD 120 (205)
.|+|+|+.++|+.+.++|+.++||++||+.|+..+..+++. | .|+ | .|+. ++|+.+|.+|||++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~--Q-----------rL~~~~~g~~-L~d~~tL~~y~i~~ 67 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQ--Q-----------RLAVHPSGVA-LQDRVPLASQGLGP 67 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGG--E-----------EEEEETTCCB-CCTTSCGGGGTCCT
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHH--E-----------EEEEcCCCCC-CCCCCCHHHcCCCC
Confidence 48999999999999999999999999999999998777765 3 477 8 6844 58999999999999
Q ss_pred CCEEEEEEec
Q 040719 121 GDELQFSRHM 130 (205)
Q Consensus 121 Gd~L~Fk~rl 130 (205)
|++|+++.+.
T Consensus 68 ~~~l~l~~~~ 77 (159)
T 3rt3_B 68 GSTVLLVVDK 77 (159)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEccC
Confidence 9999999983
No 65
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.25 E-value=1.4e-11 Score=90.13 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=63.8
Q ss_pred CCeEEEEEecCCcEEEE-EeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe---eCCeeecCCcchhcccC
Q 040719 42 PRIRLSVLKLDGSRFDV-YIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC---YDGRKLVNDKTHIRDFR 117 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V-~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi---~~G~KLldD~ktLsdyG 117 (205)
..|+|+|+ ..|+.+.| +|+.++||.+||+.|+.....++++ | .|+ |.| ++++|+.+|.+||
T Consensus 6 ~~m~i~Vk-~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~--Q-----------kLi~~k~~G-k~L~D~~~L~~~~ 70 (90)
T 1v5t_A 6 SGLPIIVK-WGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPER--Q-----------KLLGLKVKG-KPAENDVKLGALK 70 (90)
T ss_dssp CSCCEEEE-ETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTT--C-----------EEESCEETT-EECCTTSBHHHHT
T ss_pred ceEEEEEE-ECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHH--e-----------EEEeeccCC-cCcCCCCCHHHcC
Confidence 46999996 47999999 9999999999999999998777775 4 488 999 5558889999999
Q ss_pred CCCCCEEEEEEec
Q 040719 118 MKDGDELQFSRHM 130 (205)
Q Consensus 118 IkDGd~L~Fk~rl 130 (205)
|++|++|+++...
T Consensus 71 i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 71 LKPNTKIMMMGTR 83 (90)
T ss_dssp CCTTEEEEEECCC
T ss_pred CCCCCEEEEEecC
Confidence 9999999987543
No 66
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.2e-11 Score=91.59 Aligned_cols=72 Identities=17% Similarity=0.314 Sum_probs=60.2
Q ss_pred eEEEEEecCCcEEEEEeC--CCCcHHHHHHHH-HHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCC-C
Q 040719 44 IRLSVLKLDGSRFDVYIE--RNATVGELRQAI-EEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRM-K 119 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~--~sATV~DLKkAI-~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGI-k 119 (205)
|+|+|+.++|+.|.|+|+ .++||++||+.| +.....+++. | .|+|.| +++.|+.+|++||| .
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~--Q-----------rLi~~G-k~L~D~~tL~~y~I~~ 67 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISE--I-----------KLLLKG-KVLHDNLFLSDLKVTP 67 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTT--E-----------EEEETT-EECCTTCBHHHHCCCG
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHH--E-----------EEEECC-EECcCcCCHHHcCCCC
Confidence 899999999998877755 999999999999 7766555554 3 699999 55689999999999 6
Q ss_pred CCCEEEEEEe
Q 040719 120 DGDELQFSRH 129 (205)
Q Consensus 120 DGd~L~Fk~r 129 (205)
+|.+|++.-+
T Consensus 68 ~~stl~v~~~ 77 (87)
T 2lxa_A 68 ANSTITVMIK 77 (87)
T ss_dssp GGCEEEEEEC
T ss_pred CCCEEEEEcC
Confidence 9999887643
No 67
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.25 E-value=3.3e-11 Score=91.62 Aligned_cols=83 Identities=14% Similarity=0.238 Sum_probs=68.9
Q ss_pred cccCCCCeEEEEEec----------CCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeee
Q 040719 37 LKLPQPRIRLSVLKL----------DGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKL 106 (205)
Q Consensus 37 ~al~~~aMkLtVrkl----------dGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KL 106 (205)
++...+.|+|.|+.. +|+.+.|+|+.++||.+||+.|+.....+++. | .|+|.|+.
T Consensus 19 l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~--Q-----------rL~~~Gk~- 84 (115)
T 1we7_A 19 LRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK--Q-----------KLQYEGIF- 84 (115)
T ss_dssp HHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTT--E-----------EEEETTEE-
T ss_pred HHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHH--E-----------EEEECCEE-
Confidence 344456888888764 47789999999999999999999998666664 3 59999954
Q ss_pred cCCcchhcccCCCCCCEEEEEEecccc
Q 040719 107 VNDKTHIRDFRMKDGDELQFSRHMSLD 133 (205)
Q Consensus 107 ldD~ktLsdyGIkDGd~L~Fk~rl~~~ 133 (205)
+.|+.+|.+|||++|++|+++.|+...
T Consensus 85 L~D~~tL~~y~i~~g~~i~lv~rl~GG 111 (115)
T 1we7_A 85 IKDSNSLAYYNMASGAVIHLALKERSG 111 (115)
T ss_dssp ECTTSBHHHHTCCSSCEEEEEECCCSC
T ss_pred CCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 578899999999999999999988654
No 68
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.23 E-value=8.4e-11 Score=91.79 Aligned_cols=88 Identities=13% Similarity=0.294 Sum_probs=66.2
Q ss_pred CCCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccC-CCCCCCcccccccccceEEeeCCeeecCCcchhcccCC
Q 040719 40 PQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLS-PTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRM 118 (205)
Q Consensus 40 ~~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~-pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGI 118 (205)
|...|.|+|+.++|..++|+|+.++||++||+.|+...... .+..+ .=.....|||.| |++.|+.+|.+|+|
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p------~p~~qqrLIy~G-K~LeD~~TL~~y~I 85 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQV------SSPNILRLIYQG-RFLHGNVTLGALKL 85 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCC------CCTTTEEEEETT-EEECSSCBTTTTTC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCC------CChHHEEEEECC-cCCCCCCcHHHcCC
Confidence 56689999999999999999999999999999999954211 00000 001135799999 56689999999999
Q ss_pred CCCC--EEEEEEeccccc
Q 040719 119 KDGD--ELQFSRHMSLDY 134 (205)
Q Consensus 119 kDGd--~L~Fk~rl~~~~ 134 (205)
..|+ +||++.|+...-
T Consensus 86 ~~~~~~tlhLvlr~~~~~ 103 (116)
T 1wgh_A 86 PFGKTTVMHLVARETLPE 103 (116)
T ss_dssp CSSCEEEEEEEECSSCSS
T ss_pred CCCCceEEEEEccCCCCC
Confidence 9886 477787776443
No 69
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.22 E-value=3e-11 Score=89.39 Aligned_cols=75 Identities=21% Similarity=0.393 Sum_probs=63.3
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
...|+|+|+ ..|+.+.|+|+.++||.+||+.|+.....++++ | .|+|.|+.| +|. +|.+|||++
T Consensus 15 ~~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~--Q-----------rL~~~Gk~L-dd~-tL~~~~i~~ 78 (95)
T 1v86_A 15 KELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAM--Q-----------KVMYKGLVP-EDK-TLREIKVTS 78 (95)
T ss_dssp CCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTT--C-----------CCBSSSBCC-SSS-BHHHHCCCT
T ss_pred CceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHH--e-----------EEEECCeeC-CcC-cHHHCCCCC
Confidence 457999996 679999999999999999999999998877775 3 388999555 554 999999999
Q ss_pred CCEEEEEEecc
Q 040719 121 GDELQFSRHMS 131 (205)
Q Consensus 121 Gd~L~Fk~rl~ 131 (205)
|++|+++....
T Consensus 79 g~~i~lv~~~~ 89 (95)
T 1v86_A 79 GAKIMVVGSTI 89 (95)
T ss_dssp TEEEEECCSSC
T ss_pred CCEEEEEeccc
Confidence 99999976543
No 70
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.22 E-value=3.9e-11 Score=94.63 Aligned_cols=85 Identities=12% Similarity=0.286 Sum_probs=65.4
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccC-CCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLS-PTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~-pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk 119 (205)
...|.|+|+.++|+.++++|+.++||++||+.|+...... .++.+. -.....|||.| |++.|+.+|.+|||.
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~------~~~~qrLIy~G-K~LeD~~TL~~y~I~ 87 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVS------SPNILRLIYQG-RFLHGNVTLGALKLP 87 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTC------CGGGEEEESSS-SEEESSCBTGGGCCC
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCC------ChHHEEEEECC-cCCCCCCcHHHcCCC
Confidence 4469999999999999999999999999999999854211 111000 01246799999 555899999999999
Q ss_pred CCC--EEEEEEeccc
Q 040719 120 DGD--ELQFSRHMSL 132 (205)
Q Consensus 120 DGd--~L~Fk~rl~~ 132 (205)
.|+ +||++.|+..
T Consensus 88 ~~~~~tlhlv~r~~~ 102 (125)
T 2gow_A 88 FGKTTVMHLVARETL 102 (125)
T ss_dssp TTSEEEEEEEECSCC
T ss_pred CCCceEEEEEecCCC
Confidence 888 4788888764
No 71
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.20 E-value=3.5e-11 Score=89.53 Aligned_cols=74 Identities=12% Similarity=0.221 Sum_probs=62.5
Q ss_pred CCeEEEEEecCCcEE-EEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 42 PRIRLSVLKLDGSRF-DVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 42 ~aMkLtVrkldGs~f-~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
..|+|+|+ ..|+.| .|+|+.++||.+||..|+.....++++ | .|+|.|+. ++|+ +|.+|||++
T Consensus 6 ~~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~--Q-----------kLi~~Gk~-L~D~-tL~~~~I~~ 69 (96)
T 1wgg_A 6 SGYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPAR--Q-----------KVMVKGGT-LKDD-DWGNIKMKN 69 (96)
T ss_dssp CEEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTT--S-----------CCEETTEE-CCSS-CCCSCCCCS
T ss_pred cEEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHH--e-----------EEEECCcC-CCCC-CHHHCCCCC
Confidence 36999996 578999 699999999999999999998777765 4 38899954 5677 999999999
Q ss_pred CCEEEEEEecc
Q 040719 121 GDELQFSRHMS 131 (205)
Q Consensus 121 Gd~L~Fk~rl~ 131 (205)
|++|+++....
T Consensus 70 g~~i~l~~~~~ 80 (96)
T 1wgg_A 70 GMTVLMMGSAD 80 (96)
T ss_dssp SCEEECCCCCC
T ss_pred CCEEEEEecch
Confidence 99999876544
No 72
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.16 E-value=5.4e-11 Score=89.91 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=63.1
Q ss_pred CeEEEEEecCCcEEEEEeC-CCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCe-----------ee---c
Q 040719 43 RIRLSVLKLDGSRFDVYIE-RNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGR-----------KL---V 107 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~-~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~-----------KL---l 107 (205)
.|.|.|++.+|.. .|+|+ .++||.+||+.|+..+..+++. | .|++.|. .| +
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~--Q-----------rL~~~~~~~~~k~~~~~~~l~~~l 72 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHN--Q-----------TLSTNRNLLLAKSPSDFLAFTDMA 72 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTT--C-----------CCBSSGGGGTCCSHHHHTTCCSSC
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCccc--C-----------EEEECCccccccCccccccccccC
Confidence 4999999999977 78999 9999999999999998777765 3 4777775 34 6
Q ss_pred CCcchhcccCCCCCCEEEEEEec
Q 040719 108 NDKTHIRDFRMKDGDELQFSRHM 130 (205)
Q Consensus 108 dD~ktLsdyGIkDGd~L~Fk~rl 130 (205)
+|+++|.+|||++|++||++...
T Consensus 73 ~d~~tL~~~gi~~G~~L~l~~~~ 95 (107)
T 1wf9_A 73 DPNLRISSLNLAHGSMVYLAYEG 95 (107)
T ss_dssp CTTCBGGGTCCCTTCEEECCCSS
T ss_pred CCCCCHHHCCCCCCCEEEEEeCC
Confidence 89999999999999999988663
No 73
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.15 E-value=1.8e-10 Score=89.01 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=63.9
Q ss_pred ccCCC--CeEEEEEecCC--cEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchh
Q 040719 38 KLPQP--RIRLSVLKLDG--SRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHI 113 (205)
Q Consensus 38 al~~~--aMkLtVrkldG--s~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktL 113 (205)
+.|.+ .|+|+|....+ ..+.|.|.+++||++||+.|+.++..+++. |+ ++|+| +|++|+.+|
T Consensus 17 ~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~--QR-----------li~gg-kll~D~~TL 82 (105)
T 4dbg_A 17 VSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVL--QQ-----------WVIGQ-RLARDQETL 82 (105)
T ss_dssp ---CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGG--EE-----------EEETT-EEECTTCBT
T ss_pred cCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHH--EE-----------EeccC-eEccCcCcH
Confidence 34533 68899988885 578999999999999999999999888875 32 67877 688999999
Q ss_pred cccCC-CCCCEEEEEEe
Q 040719 114 RDFRM-KDGDELQFSRH 129 (205)
Q Consensus 114 sdyGI-kDGd~L~Fk~r 129 (205)
.+||| .+|+++|+..-
T Consensus 83 ~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 83 HSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp GGGTCCSTTCEEEEEEC
T ss_pred HHcCCCCCCCEEEEEEE
Confidence 99999 59999998753
No 74
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.15 E-value=1.6e-10 Score=91.93 Aligned_cols=86 Identities=14% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCCeEEEEEecCCcEE-EEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC
Q 040719 41 QPRIRLSVLKLDGSRF-DVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f-~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk 119 (205)
+..|.|+|+..+|+.| +++|+.+.||++||+.|+.......++.+. -.....|||+| |++.|+.||++|+|.
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~------~~~qQrLIy~G-K~LeD~~TLsdy~I~ 86 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPK------TVKEVKLISAG-KVLENSKTVKDYRSP 86 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCC------SGGGEEEEETT-EECCTTSBGGGGSCC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCC------ChhhEEEEECC-eECcCCCcHHHcCCC
Confidence 4689999999999998 799999999999999998754211111000 00134699999 677999999999999
Q ss_pred CC------CEEEEEEecccc
Q 040719 120 DG------DELQFSRHMSLD 133 (205)
Q Consensus 120 DG------d~L~Fk~rl~~~ 133 (205)
+| .++|++.|+...
T Consensus 87 ~~~~~~~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 87 VSNLAGAVTTMHVIIQAPVT 106 (126)
T ss_dssp TTSCTTCCEEEEEEECCCSS
T ss_pred cCCccCCcEEEEEEeccCCc
Confidence 99 468999998865
No 75
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.09 E-value=3.1e-10 Score=101.37 Aligned_cols=76 Identities=16% Similarity=0.381 Sum_probs=66.4
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
.+.|+|+|+.++|+.+.|+|+.++||++||+.|+.....+++. | .|+|.|+ +++|+.+|.+|||++
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~--Q-----------RLi~~Gk-~L~D~~TLsdygI~~ 296 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ--Q-----------RLIFAGK-QLEDGRTLSDYNIQK 296 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG--C-----------EEEETTE-ECCTTSBTGGGTCCT
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHH--E-----------EEEeCCe-ecCCCCCHHHcCCCC
Confidence 4689999999999999999999999999999999998766664 3 5999995 557899999999999
Q ss_pred CCEEEEEEec
Q 040719 121 GDELQFSRHM 130 (205)
Q Consensus 121 Gd~L~Fk~rl 130 (205)
|++|+++.|+
T Consensus 297 gstL~LvlRL 306 (307)
T 3ai5_A 297 ESTLHLVLRL 306 (307)
T ss_dssp TCEEEEEC--
T ss_pred CCEEEEEEeC
Confidence 9999999876
No 76
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.08 E-value=1.3e-10 Score=84.13 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=58.2
Q ss_pred eEEEEEecCCcEEEEE-eCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeC--Ceeec--CCcchhcccCC
Q 040719 44 IRLSVLKLDGSRFDVY-IERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYD--GRKLV--NDKTHIRDFRM 118 (205)
Q Consensus 44 MkLtVrkldGs~f~V~-V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~--G~KLl--dD~ktLsdyGI 118 (205)
|+|.|+..+|+.. |. |+.++||.|||.+|++....+++. + .|+|. ++.|. +|+.+|++|||
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~--q-----------rL~~~~p~k~l~l~~~~~tL~~~gl 66 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGS--Q-----------RILVGYPPECLDLSDRDITLGDLPI 66 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTT--C-----------CCEESSCCCCCCCCCSSCBTTTSSC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccc--e-----------EEEeCCCCcccccCCCCCCHHHcCC
Confidence 8899999999764 88 899999999999999998766654 3 35554 44442 37899999999
Q ss_pred CCCCEEEEEEe
Q 040719 119 KDGDELQFSRH 129 (205)
Q Consensus 119 kDGd~L~Fk~r 129 (205)
++|++|+|+..
T Consensus 67 ~~g~~l~v~~~ 77 (86)
T 2kzr_A 67 QSGDMLIVEED 77 (86)
T ss_dssp CTTCEEECCCC
T ss_pred CCCCEEEEEeC
Confidence 99999999865
No 77
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.07 E-value=7e-10 Score=83.11 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=62.7
Q ss_pred CCCeEEEEEecCCc--EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeC--Ce---eecCCcchh
Q 040719 41 QPRIRLSVLKLDGS--RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYD--GR---KLVNDKTHI 113 (205)
Q Consensus 41 ~~aMkLtVrkldGs--~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~--G~---KLldD~ktL 113 (205)
...++|.|....++ .+++.|+.+.||++||+.|+..+..+++. | .|+|. |+ .|++|+.+|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~--Q-----------rL~~~~~g~~~~~L~~D~~tL 79 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGT--M-----------KVQVFKGDTCVSTMDNNDAQL 79 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTT--E-----------EEEEEETTEEEEECCCTTSBH
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHH--e-----------EEEEecCCcccceeCCCCCCH
Confidence 45688888776664 78999999999999999999999877775 3 48876 54 366899999
Q ss_pred cccCCCCCCEEEEEE
Q 040719 114 RDFRMKDGDELQFSR 128 (205)
Q Consensus 114 sdyGIkDGd~L~Fk~ 128 (205)
.+|||++|++|+++.
T Consensus 80 ~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 80 GYYANSDGLRLHVVD 94 (95)
T ss_dssp HHHCCSSSCEEEEEE
T ss_pred hHCCcCCCCEEEEEC
Confidence 999999999999875
No 78
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.04 E-value=8e-10 Score=81.40 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=60.7
Q ss_pred eEEEEEecCCc-EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCC---ee---ecCCcchhccc
Q 040719 44 IRLSVLKLDGS-RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG---RK---LVNDKTHIRDF 116 (205)
Q Consensus 44 MkLtVrkldGs-~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G---~K---LldD~ktLsdy 116 (205)
|+|+|....+. .+++.|+.+.||++||..|+.....+++. | .|+|.| +. |++|+.+|.+|
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~--q-----------rL~~~~~~g~~~~~l~~D~~tL~~y 74 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASC--M-----------ELELYGADDKFYSKLDQEDALLGSY 74 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTT--C-----------BCEEECSSSCEEEECCCSSSBTTSS
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHH--e-----------EEEEeCCCCccccccCCCcCCHhHC
Confidence 78888776553 68999999999999999999998777765 3 377765 43 56899999999
Q ss_pred CCCCCCEEEEEEe
Q 040719 117 RMKDGDELQFSRH 129 (205)
Q Consensus 117 GIkDGd~L~Fk~r 129 (205)
||.+|++||++..
T Consensus 75 ~i~~g~~l~v~d~ 87 (95)
T 1v6e_A 75 PVDDGCRIHVIDH 87 (95)
T ss_dssp SCCTTCEEEEBCC
T ss_pred CCCCCCEEEEEEC
Confidence 9999999999863
No 79
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.01 E-value=4.6e-10 Score=102.11 Aligned_cols=79 Identities=22% Similarity=0.381 Sum_probs=65.4
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhc---cCCCCCCCcccccccccceEEeeCCeeecCCcchhcccC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFT---LSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFR 117 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~---~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyG 117 (205)
...|+|+|+.++|+.|.|+|..+.||.+||+.|+..+. .+++. ..|+|.| |+++|+.+|.+||
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~-------------QrLiy~G-K~L~D~~tL~dyg 70 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAG-------------QKLIYAG-KILSDDVPIRDYR 70 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTE-------------EEEESSS-SEECSSSBTTTTC
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhh-------------eEEEECC-eecCCcCCHHHcC
Confidence 35799999999999999999999999999999999642 33332 3699999 5557889999999
Q ss_pred CCCCCEE-EEEEecccc
Q 040719 118 MKDGDEL-QFSRHMSLD 133 (205)
Q Consensus 118 IkDGd~L-~Fk~rl~~~ 133 (205)
|++|++| +++.|....
T Consensus 71 I~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 71 IDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCTTSCEEEEEECCCSS
T ss_pred CCCCCEEEEEEecCCCC
Confidence 9999998 777777543
No 80
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=98.99 E-value=1.1e-09 Score=86.55 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=58.8
Q ss_pred cCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC-------CCE
Q 040719 51 LDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD-------GDE 123 (205)
Q Consensus 51 ldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD-------Gd~ 123 (205)
.....+.++|..+.||.+||+.|+.....+++. | .|+|+| ++++|++||.+|||.+ +++
T Consensus 9 r~ktTI~ldve~sdTV~~lK~kI~~~~giPp~q--Q-----------rLI~~G-k~LeD~kTL~dy~I~~~ta~~q~~at 74 (118)
T 4ajy_B 9 RHKTTIFTDAKESSTVFELKRIVEGILKRPPDE--Q-----------RLYKDD-QLLDDGKTLGECGFTSQTARPQAPAT 74 (118)
T ss_dssp EBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGG--E-----------EEEETT-EECCTTSBTTTTTCCGGGSBTTBCEE
T ss_pred cCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHH--e-----------EEEeCC-eECCCcCCHHHcCCCcCcccCCCCCE
Confidence 334578889999999999999999998777764 3 599999 6779999999999999 999
Q ss_pred EEEEEeccc
Q 040719 124 LQFSRHMSL 132 (205)
Q Consensus 124 L~Fk~rl~~ 132 (205)
|+++-|...
T Consensus 75 l~Lvlr~~~ 83 (118)
T 4ajy_B 75 VGLAFRADD 83 (118)
T ss_dssp EEEEECCSS
T ss_pred EEEEEecCC
Confidence 999999743
No 81
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=98.93 E-value=3.4e-09 Score=83.35 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=59.7
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC----
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK---- 119 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk---- 119 (205)
|-|.|++. .+.+.++|..+.||++||+.|+.+...+++. | .|+|+| ++++|+.+|.+|||.
T Consensus 3 mfl~ir~~-ktti~lev~~sdTV~~lK~kI~~~egIP~~q--Q-----------rLi~~G-k~LeD~~TLsdy~I~~~~a 67 (118)
T 2fnj_B 3 VFLMIRRH-KTTIFTDAKESSTVFELKRIVEGILKRPPEE--Q-----------RLYKDD-QLLDDGKTLGECGFTSQTA 67 (118)
T ss_dssp EEEEEEEB-TEEEEEEEETTSBHHHHHHHHHHHHCCCGGG--E-----------EEEETT-EECCTTSBHHHHTCCTTTS
T ss_pred EEEEEecC-CEEEEEEeCCcChHHHHHHHHHHHhCCCHHH--e-----------EEEECC-eECCCCCCHHHcCcccccc
Confidence 56666543 2568899999999999999999998777764 3 699999 566999999999999
Q ss_pred ---CCCEEEEEEe
Q 040719 120 ---DGDELQFSRH 129 (205)
Q Consensus 120 ---DGd~L~Fk~r 129 (205)
++++|+++-|
T Consensus 68 ~~q~~stL~L~lr 80 (118)
T 2fnj_B 68 RPQAPATVGLAFR 80 (118)
T ss_dssp BTTBCEEEEEEEB
T ss_pred cCCCCCEEEEEec
Confidence 7999999988
No 82
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.92 E-value=1.5e-09 Score=96.54 Aligned_cols=78 Identities=23% Similarity=0.300 Sum_probs=64.1
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe---eCCeeecCCcchhcccC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC---YDGRKLVNDKTHIRDFR 117 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi---~~G~KLldD~ktLsdyG 117 (205)
...|+|+|+ ..|+.|+|+|+.++||++||+.|+.....+|++ | .|+ |.| ++++|+.+|++||
T Consensus 3 ~~~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~--Q-----------kLi~~k~~G-k~l~D~~~L~~~~ 67 (320)
T 3shq_A 3 VKEVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPER--Q-----------KLLNLKYKG-KTAADNVKISALE 67 (320)
T ss_dssp -CEEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGG--C-----------EETTCBSSS-SBCCTTSBTTSSC
T ss_pred CceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHH--e-----------EEeecccCC-cccCccccHHHcC
Confidence 457999995 689999999999999999999999999888876 4 377 788 6778999999999
Q ss_pred CCCCCEEEEEEecccc
Q 040719 118 MKDGDELQFSRHMSLD 133 (205)
Q Consensus 118 IkDGd~L~Fk~rl~~~ 133 (205)
|++|.+|+++.....+
T Consensus 68 ik~g~~l~L~gs~~~~ 83 (320)
T 3shq_A 68 LKPNFKLMMVGSTEAD 83 (320)
T ss_dssp CC--CEEEEECCCC--
T ss_pred CCCCCEEEEEccchhh
Confidence 9999999998765543
No 83
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.92 E-value=5.9e-09 Score=78.55 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=61.7
Q ss_pred CCeEEEEEecCCc--EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCe---e---ecCCcchh
Q 040719 42 PRIRLSVLKLDGS--RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGR---K---LVNDKTHI 113 (205)
Q Consensus 42 ~aMkLtVrkldGs--~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~---K---LldD~ktL 113 (205)
.-++|.|.....+ .+++.|+.+.||++||..|+..+..+++. | .|+|.|+ . |++|+.+|
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~--Q-----------rLi~~g~~g~~~~~L~~D~~tL 79 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNS--M-----------ALELYDDSGSKVAVLSDDSRPL 79 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTS--E-----------EEEEECSSSCBCCCSSGGGSCH
T ss_pred ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHH--e-----------EEEEecCCCcccceecCCcCCH
Confidence 3578888765443 68999999999999999999999877775 3 5888773 3 46899999
Q ss_pred cccCCCCCCEEEEEE
Q 040719 114 RDFRMKDGDELQFSR 128 (205)
Q Consensus 114 sdyGIkDGd~L~Fk~ 128 (205)
.+|||.+|++|+++.
T Consensus 80 ~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 80 GFFSPFDGFRLHIID 94 (97)
T ss_dssp HHHCCCSCCEEEEEE
T ss_pred HHCCCCCCCEEEEEe
Confidence 999999999999886
No 84
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.92 E-value=5.4e-09 Score=78.12 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=71.1
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+..|+|.|+..+|+.+.+.|..+.++..|+++++++...++. ++.|+|+|+.| .++.|+.+|+|.+
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~-------------~~rf~FdG~~l-~~~~Tp~dl~med 70 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR-------------QIRFRFDGQPI-NETDTPAQLEMED 70 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGG-------------GEEEEETTEEC-CTTCCTTTTTCCT
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcc-------------cEEEEECCEEc-CCCCCHHHcCCCC
Confidence 346999999999999999999999999999999998765553 35799999877 6779999999999
Q ss_pred CCEEEEEEeccccccc
Q 040719 121 GDELQFSRHMSLDYLH 136 (205)
Q Consensus 121 Gd~L~Fk~rl~~~~~~ 136 (205)
||+|+++.++...+.+
T Consensus 71 gD~Idv~~~~~GG~~~ 86 (94)
T 2io1_B 71 EDTIDVFQQQTGGVPE 86 (94)
T ss_dssp TCEEEEEECCEESCCC
T ss_pred CCEEEEEEeccCCCcc
Confidence 9999999998887543
No 85
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.91 E-value=7e-09 Score=77.32 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=70.9
Q ss_pred cCCCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCC
Q 040719 39 LPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRM 118 (205)
Q Consensus 39 l~~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGI 118 (205)
|++..|+|.|+..+|+.+.+.|..+.++..|+.++++....++. ++.++|+|+.| .+++|..+|||
T Consensus 1 ~~~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~-------------~~rf~FdG~~l-~~~~Tp~dl~m 66 (91)
T 2io0_B 1 MANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR-------------QIRFRFDGQPI-NETDTPAQLEM 66 (91)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCST-------------TEEEEETTEEC-CTTCCTTTTTC
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcc-------------cEEEEECCEEc-CCCCCHHHcCC
Confidence 45678999999999999999999999999999999998655443 36799999887 67799999999
Q ss_pred CCCCEEEEEEeccccccc
Q 040719 119 KDGDELQFSRHMSLDYLH 136 (205)
Q Consensus 119 kDGd~L~Fk~rl~~~~~~ 136 (205)
.|||+|.++.+....+..
T Consensus 67 edgD~Idv~~~q~gg~~~ 84 (91)
T 2io0_B 67 EDEDTIDVFQQQTGGVYL 84 (91)
T ss_dssp CTTEEEEEEECCCCCCCC
T ss_pred CCCCEEEEEEeccCCccc
Confidence 999999999988776553
No 86
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.90 E-value=2.3e-09 Score=78.87 Aligned_cols=73 Identities=10% Similarity=0.070 Sum_probs=58.4
Q ss_pred eEEEEE--ecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEee-------CCeeecCCcchhc
Q 040719 44 IRLSVL--KLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCY-------DGRKLVNDKTHIR 114 (205)
Q Consensus 44 MkLtVr--kldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~-------~G~KLldD~ktLs 114 (205)
++|.|. ......+++.++.+.||.+||..|+..+.-+++. | .|+| .| ++++|+.+|.
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~--Q-----------rLi~~~~~~~~~g-~~l~d~~tL~ 68 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEY--M-----------QLQLIDDRGITIE-KNMANDKQLG 68 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGG--E-----------EEEEECTTSCEEE-SSCCTTSBGG
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHH--E-----------EEEEecCCCCcee-eEcCCCCCHH
Confidence 355553 2344557899999999999999999998777764 3 4775 34 7889999999
Q ss_pred ccCCCCCCEEEEEEec
Q 040719 115 DFRMKDGDELQFSRHM 130 (205)
Q Consensus 115 dyGIkDGd~L~Fk~rl 130 (205)
+|||.+|.+||++..-
T Consensus 69 ~Y~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 69 YYQCRDEFVIHVVDLQ 84 (86)
T ss_dssp GGTCCTTCEEEEEECC
T ss_pred HCCCCCCCEEEEEeCC
Confidence 9999999999998754
No 87
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.90 E-value=5.7e-09 Score=80.53 Aligned_cols=74 Identities=11% Similarity=0.154 Sum_probs=61.7
Q ss_pred CeEEEEEecCCc-EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCC---ee---ecCCcchhcc
Q 040719 43 RIRLSVLKLDGS-RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG---RK---LVNDKTHIRD 115 (205)
Q Consensus 43 aMkLtVrkldGs-~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G---~K---LldD~ktLsd 115 (205)
.|+|+|....+. .+++.|+.++||++||..|+..+..++.. | .|+|.| +. |++|+.+|.+
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~--q-----------rL~~~g~~~~~~~~l~~D~~tL~~ 72 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDS--M-----------RIQLFDGDDQLKGELTDGAKSLKD 72 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTT--E-----------EEEEECSSSSEEEECCCCSSBTTT
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHH--e-----------EEEEecCCCccccccCCCcCCHHH
Confidence 488989776554 68899999999999999999998877765 3 588866 33 4689999999
Q ss_pred cCCCCCCEEEEEEe
Q 040719 116 FRMKDGDELQFSRH 129 (205)
Q Consensus 116 yGIkDGd~L~Fk~r 129 (205)
|||.+|++||++..
T Consensus 73 y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 73 LGVRDGYRIHAVDV 86 (122)
T ss_dssp TTCCSSEEEEEEEC
T ss_pred CCCCCCCEEEEEeC
Confidence 99999999999973
No 88
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=4.3e-09 Score=79.99 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=60.5
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEee-CCeeecCCcchhcccCCCCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCY-DGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~-~G~KLldD~ktLsdyGIkDG 121 (205)
.|-+.+++..|+.++|+|+.++||++||..|+.+...+|++ |+ |+| .+.+| +|+.+|++|||++|
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~--Qk-----------Li~~~~gkL-~D~~tLs~~~I~~g 73 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSK--ML-----------LKGWKTGDV-EDSTVLKSLHLPKN 73 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTT--CC-----------EECCSSSCC-CTTSBHHHHCCCSE
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhH--eE-----------EEccCCCCC-CCcCCHHHcCCCCC
Confidence 47666778999999999999999999999999999888875 43 554 33354 78899999999999
Q ss_pred CEEEEEEe
Q 040719 122 DELQFSRH 129 (205)
Q Consensus 122 d~L~Fk~r 129 (205)
++||++-.
T Consensus 74 stL~lvl~ 81 (100)
T 2dzm_A 74 NSLYVLTP 81 (100)
T ss_dssp EEEEECCS
T ss_pred CEEEEEec
Confidence 99988543
No 89
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.86 E-value=9.1e-09 Score=75.82 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=62.9
Q ss_pred cCCCCeEEEEEe---cCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCC-------eeecC
Q 040719 39 LPQPRIRLSVLK---LDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG-------RKLVN 108 (205)
Q Consensus 39 l~~~aMkLtVrk---ldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G-------~KLld 108 (205)
+..+.++|+|.. .+|..+++.++.+.||.+||..|++.|..++.. ++ |.|.+ ..|.+
T Consensus 5 ~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~--q~-----------L~~~~~~~~~~~~~L~~ 71 (97)
T 1wjn_A 5 SSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSE--LL-----------LSYESSKMPGREIELEN 71 (97)
T ss_dssp SSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTT--CE-----------EEEECTTSCSCEEECCC
T ss_pred ccCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhH--eE-----------EEEEcCCCCceeeccCC
Confidence 445668888864 578889999999999999999999999877765 43 44431 23669
Q ss_pred CcchhcccCCCCCCEEEEEEe
Q 040719 109 DKTHIRDFRMKDGDELQFSRH 129 (205)
Q Consensus 109 D~ktLsdyGIkDGd~L~Fk~r 129 (205)
|..+|.+|||.+|++|++...
T Consensus 72 d~~~L~~y~i~~G~~I~V~d~ 92 (97)
T 1wjn_A 72 DLQPLQFYSVENGDCLLVRWS 92 (97)
T ss_dssp SSSBSGGGTCCTTCEEEEECC
T ss_pred CcccHhhcCCCCCCEEEEEec
Confidence 999999999999999999864
No 90
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.76 E-value=4.8e-08 Score=68.89 Aligned_cols=70 Identities=27% Similarity=0.377 Sum_probs=61.9
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|.|+..+|+.+.+.|..+.++..|+.+++++...++. ++.++|+|+.| .+++|..++|+.+||+
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~-------------~~rf~fdG~~l-~~~~Tp~~l~medgD~ 67 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR-------------QIRFRFDGQPI-NETDTPAQLEMEDEDT 67 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTT-------------TCEEEETTEEC-CTTCCTTTTTCCTTEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcc-------------eEEEEECCEEc-CCCCCHHHcCCCCCCE
Confidence 899999999999999999999999999999998765553 25699999887 6779999999999999
Q ss_pred EEEE
Q 040719 124 LQFS 127 (205)
Q Consensus 124 L~Fk 127 (205)
|++.
T Consensus 68 Idv~ 71 (72)
T 1wm3_A 68 IDVF 71 (72)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
No 91
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.75 E-value=8.6e-08 Score=69.05 Aligned_cols=73 Identities=22% Similarity=0.367 Sum_probs=63.5
Q ss_pred CCCeEEEEEecCCc-EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC
Q 040719 41 QPRIRLSVLKLDGS-RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 41 ~~aMkLtVrkldGs-~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk 119 (205)
+..|+|.|+..+|+ .+.+.|..+.++..|+.+++++...++.. +.++|+|+.| .+++|..+|||.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~-------------~rf~fdG~~l-~~~~Tp~~l~me 70 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHK-------------LSFFFDGTKL-SGKELPADLGLE 70 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCC-------------CEEEETTEEC-CSCCCHHHHTCC
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCccc-------------EEEEECCEEc-CCCCCHHHcCCC
Confidence 56799999999996 89999999999999999999987655542 4699999877 678899999999
Q ss_pred CCCEEEEE
Q 040719 120 DGDELQFS 127 (205)
Q Consensus 120 DGd~L~Fk 127 (205)
+||+|++.
T Consensus 71 dgD~Idv~ 78 (79)
T 3a4r_A 71 SGDLIEVW 78 (79)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEe
Confidence 99999874
No 92
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.70 E-value=8.6e-08 Score=71.23 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=66.8
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+..|+|.|+..+|+.+.+.|..+.++..|+.+++.....++. ++.++|+|+.| .++.|..+|+|.+
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~-------------~~rf~fdG~~l-~~~~Tp~dl~med 80 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR-------------QIRFRFDGQPI-NETDTPAQLEMED 80 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGG-------------GEEEEETTEEC-CTTCCTTTTTCCT
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCcc-------------ceEEEECCEEc-CCCCCHHHcCCCC
Confidence 457999999999999999999999999999999998755443 36799999887 6789999999999
Q ss_pred CCEEEEEEecc
Q 040719 121 GDELQFSRHMS 131 (205)
Q Consensus 121 Gd~L~Fk~rl~ 131 (205)
||+|++..++.
T Consensus 81 gD~Idv~~~q~ 91 (93)
T 2d07_B 81 EDTIDVFQQQT 91 (93)
T ss_dssp TEEEEEEECC-
T ss_pred CCEEEEEeecc
Confidence 99999988764
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.66 E-value=8.6e-08 Score=73.18 Aligned_cols=80 Identities=24% Similarity=0.327 Sum_probs=69.4
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
...|+|.|+..+|+.+.+.|..+.++..|+.+++++...++.. +.|+|+|+.| .++.|..+|+|.+
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~-------------~rf~FdG~~l-~~~~Tp~dl~med 87 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQ-------------IRFRFDGQPI-NETDTPAQLEMED 87 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTT-------------SCEESSSSBC-CTTSCTTTTTCCT
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcce-------------EEEEECCEEc-CCCCCHHHcCCCC
Confidence 3579999999999999999999999999999999997665542 4599999887 6779999999999
Q ss_pred CCEEEEEEeccccc
Q 040719 121 GDELQFSRHMSLDY 134 (205)
Q Consensus 121 Gd~L~Fk~rl~~~~ 134 (205)
||+|+++.++...+
T Consensus 88 gD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 88 EDTIDVFQQQTSGP 101 (104)
T ss_dssp TEEEEECCCCCCCS
T ss_pred CCEEEEEEeccCCC
Confidence 99999998876654
No 94
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.61 E-value=2.2e-07 Score=71.80 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=69.1
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+..|+|.|+..+|+.+.+.|..+.++..|+.++++....++.. +.|+|+|+.| .+++|..+|+|.+
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~-------------~rfiFdG~~L-~~~~Tp~dl~mED 89 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNS-------------VRFLFDGTPI-DETKTPEELGMED 89 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSS-------------CEEESSSCBC-CSSSHHHHHHCSS
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCccc-------------EEEEECCEEc-CCCCCHHHcCCCC
Confidence 5689999999999999999999999999999999987655543 4699999887 6779999999999
Q ss_pred CCEEEEEEecccc
Q 040719 121 GDELQFSRHMSLD 133 (205)
Q Consensus 121 Gd~L~Fk~rl~~~ 133 (205)
||+|.+...+...
T Consensus 90 gD~Idv~~~q~Gg 102 (110)
T 2k8h_A 90 DDVIDAMVEQTGG 102 (110)
T ss_dssp EEEEEEECCCCCC
T ss_pred CCEEEEEEcccCc
Confidence 9999998877654
No 95
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.56 E-value=9.6e-09 Score=86.48 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=0.8
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|.|+|+.++|+.+.|+|+.+.||.+||..|+.....+++. | .|+|.|+ .+.|+.+|. +|++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~q--Q-----------RLIf~GK-~LeD~~TLs-----~~ST 61 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDM--M-----------TLVNNGF-IAPNTELVT-----DDVT 61 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhH--E-----------EEEecCe-ECCCCCccc-----CCCE
Confidence 8899999999999999999999999999999997666664 3 5999995 457888998 9999
Q ss_pred EEEEEecccccc
Q 040719 124 LQFSRHMSLDYL 135 (205)
Q Consensus 124 L~Fk~rl~~~~~ 135 (205)
|+++.|+...-.
T Consensus 62 LhLvlRLrGG~~ 73 (189)
T 2xzm_9 62 YYLSLKLLGGKK 73 (189)
T ss_dssp ----------CC
T ss_pred EEEEEecCCCcc
Confidence 999999976543
No 96
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.49 E-value=5.4e-07 Score=69.28 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=65.2
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
...|+|.|+. +|+.+.+.|..+.++..|+.++++....++. ++.++|+|+.| .++.|..+|||.+
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~-------------~~rF~FdG~rl-~~~~Tp~dl~med 93 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD-------------SLRFLYDGIRI-QADQTPEDLDMED 93 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGG-------------GEEEEETTEEC-CTTCCTTTTTCCT
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcc-------------cEEEEECCeEc-CCCCCHHHcCCCC
Confidence 3569999999 9999999999999999999999998754443 46799999877 6789999999999
Q ss_pred CCEEEEEEecc
Q 040719 121 GDELQFSRHMS 131 (205)
Q Consensus 121 Gd~L~Fk~rl~ 131 (205)
||+|.+..++.
T Consensus 94 gD~Idv~~~q~ 104 (106)
T 2eke_C 94 NDIIEAHREQI 104 (106)
T ss_dssp TEEEEEEECC-
T ss_pred CCEEEEEeecc
Confidence 99999987754
No 97
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.29 E-value=5.2e-07 Score=65.53 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=54.3
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCC-eee-cCCcchhcccCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG-RKL-VNDKTHIRDFRMK 119 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G-~KL-ldD~ktLsdyGIk 119 (205)
..|.|.|+..+|. +-|+|+.++||.+|+..|++.+..+.....- .+.+.. ..| ...+.+|+++||+
T Consensus 3 ~~m~lRvrs~~G~-~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l-----------~~~~~p~~~l~~~~~~~l~~lgl~ 70 (80)
T 2pjh_A 3 ESIIIRVQSPDGV-KRITATKRETAATFLKKVAKEFGFQNNGFSV-----------YINRNKTGEITASSSKSLHLLKIK 70 (80)
T ss_dssp CCCCCEEECSSEE-EECCCCSSCCHHHHHHHHHHHTCCCTTTCCC-----------CCSCCGGGGSSSCCCCTTTTTCCC
T ss_pred CcEEEEEECCCCC-EEEEcCCcChHHHHHHHHHHHcCCCCCcceE-----------EecCCCCCcccCCCCCCHHHcCCC
Confidence 4699999888885 4688999999999999999998755443211 222222 123 2367899999999
Q ss_pred CCCEEEEEE
Q 040719 120 DGDELQFSR 128 (205)
Q Consensus 120 DGd~L~Fk~ 128 (205)
.||.|++.+
T Consensus 71 hGd~l~l~~ 79 (80)
T 2pjh_A 71 HGDLLFLFP 79 (80)
T ss_dssp TTCCEEC--
T ss_pred CCCEEEEec
Confidence 999998764
No 98
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.17 E-value=1.1e-05 Score=63.07 Aligned_cols=75 Identities=13% Similarity=0.313 Sum_probs=64.8
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+..|+|.|+..+|..+.+.|..+.++..|+.++.+....++. ++.++|+|+.| .++.|..++|+.|
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~-------------~irFlFDG~rI-~~~~TP~dL~MED 103 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN-------------SLRFLFEGQRI-ADNHTPKELGMEE 103 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTT-------------SEEEEETTEEC-CTTCCTTTTTCCT
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChh-------------hEEEEECCeEC-CCCCCHHHcCCCC
Confidence 357999999999999999999999999999999998754443 36899999887 6789999999999
Q ss_pred CCEEEEEEe
Q 040719 121 GDELQFSRH 129 (205)
Q Consensus 121 Gd~L~Fk~r 129 (205)
||+|.+...
T Consensus 104 gD~IdV~~~ 112 (115)
T 3kyd_D 104 EDVIEVYQE 112 (115)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEee
Confidence 999988764
No 99
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.97 E-value=7e-05 Score=56.05 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=62.6
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+..|++-+++....-|.+.|+.++||.+|=+|+..+...++.. .+-|.|+|..| +.++++.+|+|.|
T Consensus 7 ~~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~------------~IrllFDGdRL-dp~~tp~DlemeD 73 (82)
T 3goe_A 7 HKLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHE------------RIRLEFEGEWL-DPNDQVQSTELED 73 (82)
T ss_dssp CCEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCT------------TCEEEETTEEC-CTTSBGGGSSCCT
T ss_pred hHHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCc------------eEEEEEcCccc-CccCChhhhCCcC
Confidence 4578888888888889999999999999999999986554443 35799999887 7889999999999
Q ss_pred CCEEEEE
Q 040719 121 GDELQFS 127 (205)
Q Consensus 121 Gd~L~Fk 127 (205)
||+|-++
T Consensus 74 ~D~IDvm 80 (82)
T 3goe_A 74 EDQVSVV 80 (82)
T ss_dssp TCEEEEE
T ss_pred Cceeeee
Confidence 9998654
No 100
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.94 E-value=3.9e-05 Score=56.75 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=55.6
Q ss_pred CeEEEEEe--cCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 43 RIRLSVLK--LDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 43 aMkLtVrk--ldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
-|.|||.- -.|+.|++.||..-||.+|...+-+.+......... | .+.....+ .++.++++|.+|||+|
T Consensus 4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~---~-----~irv~NK~-~~L~~~~~L~d~~Itn 74 (81)
T 2bps_A 4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREG---H-----WIRVVNKD-KVFSGECKLSDCGITN 74 (81)
T ss_dssp EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTT---C-----EEEEGGGT-EEEETTSBTGGGTCCT
T ss_pred EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCC---C-----EEEEecCC-EEEcCCCEEeeCCcCC
Confidence 36777743 478899999999999999999999998654322111 1 13334445 5668999999999999
Q ss_pred CCEEEE
Q 040719 121 GDELQF 126 (205)
Q Consensus 121 Gd~L~F 126 (205)
||.|.+
T Consensus 75 GD~Lei 80 (81)
T 2bps_A 75 GDRLEI 80 (81)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 998753
No 101
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.87 E-value=7.1e-05 Score=63.36 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=67.9
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+.-|+|.|+ .+|..+.+.|..+.++..|++++.+....++. ++.++|+|++| .++.|..++||.|
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~-------------~~RF~FdG~rI-~~~~TP~dL~MEd 91 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD-------------SLRFLYDGIRI-QADQTPEDLDMED 91 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGG-------------GEEEEETTEEC-CTTCCTTTTTCCT
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChh-------------hEEEEECCEEc-CCCCCHHHcCCCC
Confidence 456999995 69999999999999999999999998754433 46899999888 6789999999999
Q ss_pred CCEEEEEEeccccc
Q 040719 121 GDELQFSRHMSLDY 134 (205)
Q Consensus 121 Gd~L~Fk~rl~~~~ 134 (205)
||+|.+...+....
T Consensus 92 gD~Idv~~~q~gg~ 105 (200)
T 3pge_A 92 NDIIEAHREQIGGG 105 (200)
T ss_dssp TEEEEEEECCSCCC
T ss_pred CCEEEEEeccCcCc
Confidence 99999998887654
No 102
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.72 E-value=6.3e-05 Score=64.43 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=68.3
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+..|+|.|. .+|..+.+.|..+.++..|++++.+....++. ++.++|+|++| .++.|..+++|.|
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~-------------sIRFLFDGqRI-~~ddTPeDLdMED 119 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD-------------SLTFLYDGIEI-QADQTPEDLDMED 119 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGG-------------GSCEEETTEEC-CSSCCTTTTTCCT
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcc-------------cEEEEECCeec-CCCCCHHHcCCCC
Confidence 346999995 69999999999999999999999998755443 35699999888 6789999999999
Q ss_pred CCEEEEEEecccccc
Q 040719 121 GDELQFSRHMSLDYL 135 (205)
Q Consensus 121 Gd~L~Fk~rl~~~~~ 135 (205)
||+|.+..+....+.
T Consensus 120 GDtIDV~leQ~GG~~ 134 (207)
T 3tix_A 120 NDIIEAHREQIGGLP 134 (207)
T ss_dssp TEEEEECCCCCTTGG
T ss_pred CCEEEEEEeccCCCc
Confidence 999999999887754
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.54 E-value=0.00047 Score=52.21 Aligned_cols=72 Identities=24% Similarity=0.423 Sum_probs=60.6
Q ss_pred CCCeEEEEEecCCc-EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC
Q 040719 41 QPRIRLSVLKLDGS-RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 41 ~~aMkLtVrkldGs-~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk 119 (205)
...|+|.|+..+|. .+.+.|..+.+..-|..|..+.....+. ++.+.|+|.+| ..++|-.++|+.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~-------------~vrF~FDG~rI-~~~~TP~dLdME 88 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGR-------------KLSFFFDGTKL-SGRELPADLGME 88 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSS-------------CCEEEETTEEC-CSCSCHHHHTCC
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcc-------------cEEEEECCEEc-CCCCCHHHcCCC
Confidence 46799999999995 7889999999999999999887644333 46799999887 567899999999
Q ss_pred CCCEEEE
Q 040719 120 DGDELQF 126 (205)
Q Consensus 120 DGd~L~F 126 (205)
|||+|-+
T Consensus 89 DgD~IDv 95 (97)
T 2jxx_A 89 SGDLIEV 95 (97)
T ss_dssp TTEEEEE
T ss_pred CCCEEEE
Confidence 9999865
No 104
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.31 E-value=3.6e-05 Score=66.69 Aligned_cols=82 Identities=20% Similarity=0.249 Sum_probs=2.3
Q ss_pred CCCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC
Q 040719 40 PQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 40 ~~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk 119 (205)
|+.-|+|.| ..+|+.+.+.|..+.++..|++|+.+....++. ++.++|+|++| .+++|..++|+.
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~-------------siRFLFDGqRI-~dddTPadL~ME 82 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD-------------SLRFLYDGIRI-QADQTPEDLDME 82 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCcc-------------ceEEEECCEec-CCCCCHHHcCCC
Confidence 356799999 889999999999999999999999998755443 35699999888 578999999999
Q ss_pred CCCEEEEEEeccccccc
Q 040719 120 DGDELQFSRHMSLDYLH 136 (205)
Q Consensus 120 DGd~L~Fk~rl~~~~~~ 136 (205)
|||+|.+.......+..
T Consensus 83 DGDtIDV~leQ~GG~~~ 99 (227)
T 3v7o_A 83 DNDIIEAHREQIGGLTL 99 (227)
T ss_dssp -------------CCCH
T ss_pred CCCEEEEEecccCCchH
Confidence 99999999988887654
No 105
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.23 E-value=0.0015 Score=52.00 Aligned_cols=73 Identities=16% Similarity=0.314 Sum_probs=56.3
Q ss_pred EEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe------------------------
Q 040719 45 RLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC------------------------ 100 (205)
Q Consensus 45 kLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi------------------------ 100 (205)
.|+|+-.||....+.|+.+.||.+++..|..++..+.... |.|+
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e------------y~L~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE------------YSLVRELMEEKKDEGTGTLRKDKTLLRD 80 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS------------EEEEEECCCCCCCCCSSCCSSSSSCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc------------ccccccccccccccCchhhccccccccc
Confidence 6899999999999999999999999999999986432210 1111
Q ss_pred -------------eCCeeecCCcchhcccCCCCCCEEEEEEe
Q 040719 101 -------------YDGRKLVNDKTHIRDFRMKDGDELQFSRH 129 (205)
Q Consensus 101 -------------~~G~KLldD~ktLsdyGIkDGd~L~Fk~r 129 (205)
-++...++++.+|.++||.+|++|.+..+
T Consensus 81 ~~~~~~~k~kL~~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 81 EKKMEKLKQKLHTDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp SCCSCSSCCSCCCSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred hhHHHHHHHHhcccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 11224457789999999999999888765
No 106
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.12 E-value=0.0015 Score=49.46 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=60.7
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
++.|.|+|...+|..+.|.|.++.|+.|+=+..-++|...++ .|+|.|.+ |.++-+-.++-.||-+
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~-------------~~~Lkh~~-k~lDLSlpfRlsgLpn 72 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPS-------------EYDLKFQR-TVLDLSLQWRFANLPN 72 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGG-------------GCEEEETT-EEESSSCBHHHHCCCS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChh-------------hCeEEeCC-EeccccceeEecCCCC
Confidence 678999999999999999999999999965555566655443 37999999 5558889999999999
Q ss_pred CCEEEEEEec
Q 040719 121 GDELQFSRHM 130 (205)
Q Consensus 121 Gd~L~Fk~rl 130 (205)
|..|..+..-
T Consensus 73 nAkLELv~~s 82 (90)
T 2al3_A 73 NAKLEMVPVS 82 (90)
T ss_dssp SCEEEEECSS
T ss_pred CCEEEEEEcc
Confidence 9999987653
No 107
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.23 E-value=0.016 Score=48.13 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=67.5
Q ss_pred CCCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC
Q 040719 40 PQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 40 ~~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk 119 (205)
++..|+|.|+. +|+...+.|..+.+..-|+++..+....++.. +.++|+|+++ .+++|-.+..+.
T Consensus 18 ~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~-------------~~f~fdG~~i-~~~~Tpk~L~~e 82 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDS-------------LRFLYDGIRI-QADQTPEDLDME 82 (209)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGG-------------CEEEETTEEC-CTTCCTTTTTCC
T ss_pred CCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChhe-------------EEEEECCEec-cCCCChHHhhhc
Confidence 35679999976 88888899999999999999999997665543 5799999887 678999999999
Q ss_pred CCCEEEEEEeccccc
Q 040719 120 DGDELQFSRHMSLDY 134 (205)
Q Consensus 120 DGd~L~Fk~rl~~~~ 134 (205)
|||+|.+.......+
T Consensus 83 d~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 83 DNDIIEAHREQIGGS 97 (209)
T ss_dssp TTEEEEEECSCTTCC
T ss_pred ccccchhhccccccc
Confidence 999998887766644
No 108
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.12 E-value=0.00091 Score=61.11 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC
Q 040719 40 PQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 40 ~~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk 119 (205)
|+.-|+|.|+. +|+.+.+.|..+.++..|++|+.+.....+. ++.+.|+|++| .++.|..++|+.
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~-------------~~rFlFdG~rI-~~~~TP~~L~ME 82 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD-------------SLRFLYDGIRI-QADQTPEDLDME 82 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcc-------------eEEEEECCeEC-CCCCChHHcCCC
Confidence 45678999976 7888888899999999999999988654443 35789999888 577999999999
Q ss_pred CCCEEEEEEecccc
Q 040719 120 DGDELQFSRHMSLD 133 (205)
Q Consensus 120 DGd~L~Fk~rl~~~ 133 (205)
|||+|.+.......
T Consensus 83 DgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 83 DNDIIEAHREQIGG 96 (360)
T ss_dssp --------------
T ss_pred ccchhhhhhccCch
Confidence 99999998887654
No 109
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=95.98 E-value=0.052 Score=38.70 Aligned_cols=74 Identities=9% Similarity=0.244 Sum_probs=55.9
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe--eCCeeec--CCcchhccc
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC--YDGRKLV--NDKTHIRDF 116 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi--~~G~KLl--dD~ktLsdy 116 (205)
.+..+|.|+.-||+.+.-....+.||.+|...|... ... +..|.|+ |-.+.+. +.+.+|.+.
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~-~~~-------------~~~f~L~t~fPrk~l~~~d~~~TL~e~ 70 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFP-------------WDEYKLLSTFPRRDVTQLDPNKSLLEV 70 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHT-TCC-------------TTTEEEECSSSCCBGGGSCTTSBTTTT
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHc-CCC-------------CCCeEEEeCCCCCCCcCCCCCCCHHHC
Confidence 346789999999998877778899999999999873 111 2345666 3344554 667899999
Q ss_pred CCCCCCEEEEEE
Q 040719 117 RMKDGDELQFSR 128 (205)
Q Consensus 117 GIkDGd~L~Fk~ 128 (205)
|+.+++.|.+..
T Consensus 71 gL~p~a~L~ve~ 82 (84)
T 3qx1_A 71 KLFPQETLFLEA 82 (84)
T ss_dssp TCCSEEEEEEEE
T ss_pred CCCCCCEEEEEe
Confidence 999999888754
No 110
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=95.73 E-value=0.0017 Score=57.85 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+..|+|.|+. +|....+.|..+.+..-|+++..+....++.. +.+.|+|++| .++.|-.++||.|
T Consensus 28 ~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~-------------~~f~f~G~~i-~~~~Tp~~l~med 92 (389)
T 4da1_A 28 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDS-------------LRFLYDGIRI-QADQAPEDLDMED 92 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcce-------------EEEEECCEEc-CCCCCHHHcCCCC
Confidence 4568899976 78888888999999999999999987655543 5789999887 6789999999999
Q ss_pred CCEEEEEEecccccc
Q 040719 121 GDELQFSRHMSLDYL 135 (205)
Q Consensus 121 Gd~L~Fk~rl~~~~~ 135 (205)
||+|.+.........
T Consensus 93 ~d~i~~~~~q~gg~n 107 (389)
T 4da1_A 93 NDIIEAHREQIGGEN 107 (389)
T ss_dssp ---------------
T ss_pred CCEeeeeeccccccc
Confidence 999988887776554
No 111
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=95.49 E-value=0.12 Score=39.24 Aligned_cols=73 Identities=10% Similarity=0.164 Sum_probs=60.6
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+..|+|.|+ .+|..+-+.|-.+.-..-|.+|........+.. .-+.|+|++| .++.|-.++|+.|
T Consensus 19 ~~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~s-------------irFlfDG~rI-~~~~TP~~L~meD 83 (95)
T 2l76_A 19 PRLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSR-------------ILLLFGETEL-SPTATPRTLKLGV 83 (95)
T ss_dssp CCCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGG-------------EEEEETTEEC-CTTSCHHHHTCCS
T ss_pred CCeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhh-------------EEEEECCcCC-CCCCCHhHcCCCC
Confidence 557999998 578888888999999999999988876555543 5789999998 6788999999999
Q ss_pred CCEEEEEE
Q 040719 121 GDELQFSR 128 (205)
Q Consensus 121 Gd~L~Fk~ 128 (205)
||+|-+..
T Consensus 84 ~DiID~~~ 91 (95)
T 2l76_A 84 ADIIDCVV 91 (95)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEE
Confidence 99987654
No 112
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.92 E-value=0.15 Score=42.36 Aligned_cols=84 Identities=12% Similarity=0.230 Sum_probs=57.5
Q ss_pred CeEEEEEecCCc--EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 43 RIRLSVLKLDGS--RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 43 aMkLtVrkldGs--~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
++.+++...... .+.+.++..+||.+|++.+.+.|..+++... ++|.-+-- .....|.+++.||.+++|.+
T Consensus 127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~------RlW~~~~~-~~~~~L~~~~~tl~~~~l~~ 199 (217)
T 4a3p_A 127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKET------RLWNKYMS-NTFEPLNKPDSTIQDAGLYQ 199 (217)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCE------EEEEEEET-TEEEECCCTTSBHHHHTCCT
T ss_pred ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCce------EEEEecCC-CCeeecCCCCCCHHHhCCCC
Confidence 566777666543 2556779999999999999999987765322 24432210 01124445568999999999
Q ss_pred CCEEEEEEecccc
Q 040719 121 GDELQFSRHMSLD 133 (205)
Q Consensus 121 Gd~L~Fk~rl~~~ 133 (205)
|..|.+-.|....
T Consensus 200 ~Q~illE~r~~dg 212 (217)
T 4a3p_A 200 GQVLVIEQKNEDG 212 (217)
T ss_dssp TCEEEEEECCCC-
T ss_pred CCEEEEEEecCCC
Confidence 9999998886543
No 113
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=94.88 E-value=0.28 Score=36.98 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=56.8
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe--eCCeeec--CCcchhccc
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC--YDGRKLV--NDKTHIRDF 116 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi--~~G~KLl--dD~ktLsdy 116 (205)
....+|.|+.-||+.+.-....+.||.+|...|....... +..|.|+ |-.+.+. +.+.+|.+.
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~-------------~~~f~L~t~fPrk~l~~~d~~~TL~el 77 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNT-------------YGNFSLATMFPRREFTREDYKRRLLDL 77 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTS-------------SCSCEEECSSSCCBCCTTTTTSBTGGG
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCC-------------CCceEEEcCCCCcCCcccccCCCHHHC
Confidence 3468999999999998888899999999999999874211 1234444 3343444 457899999
Q ss_pred CCCCCCEEEEEEe
Q 040719 117 RMKDGDELQFSRH 129 (205)
Q Consensus 117 GIkDGd~L~Fk~r 129 (205)
|+.+...|++...
T Consensus 78 gL~psa~L~v~~~ 90 (109)
T 2dzk_A 78 ELAPSASVVLLPA 90 (109)
T ss_dssp TCSSEEEEEEECC
T ss_pred CCCCceEEEEEEC
Confidence 9999987777653
No 114
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.87 E-value=0.16 Score=42.81 Aligned_cols=81 Identities=11% Similarity=0.204 Sum_probs=58.9
Q ss_pred CeEEEEEecCCcE--EEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCC---eeecCCcchhcccC
Q 040719 43 RIRLSVLKLDGSR--FDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG---RKLVNDKTHIRDFR 117 (205)
Q Consensus 43 aMkLtVrkldGs~--f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G---~KLldD~ktLsdyG 117 (205)
++.+++....... +.+.++..+||.+|++.+.+.|..+++...+ +|.++.+ ..|.+.+.+|.+++
T Consensus 139 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~R----------LW~~~~~~~~~~L~~~~~tl~d~~ 208 (231)
T 3jyu_A 139 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETR----------LWNKYMSNTYEQLSKLDNTIQDAG 208 (231)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEE----------EEECSSSSSCEECCCTTSBTTTTT
T ss_pred cceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEE----------EEEecCCCCHhhhcCCCCCHHHhC
Confidence 6677776665543 4556699999999999999999876653222 3444422 34555679999999
Q ss_pred CCCCCEEEEEEecccc
Q 040719 118 MKDGDELQFSRHMSLD 133 (205)
Q Consensus 118 IkDGd~L~Fk~rl~~~ 133 (205)
|.+|..|.+-.|....
T Consensus 209 L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 209 LYQGQVLVIEPQNEDG 224 (231)
T ss_dssp CCTTEEEEEEECCTTS
T ss_pred CCCCCEEEEEEecCCC
Confidence 9999999998887554
No 115
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.84 E-value=0.2 Score=36.50 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=48.1
Q ss_pred CCCeEEEEEecC-------CcEEEEEeCCCCcHHHHHHHHHHHhccCCC-----CCCCcccccccccceEEeeCCeeecC
Q 040719 41 QPRIRLSVLKLD-------GSRFDVYIERNATVGELRQAIEEVFTLSPT-----EGQGKISWTNVWGHFCLCYDGRKLVN 108 (205)
Q Consensus 41 ~~aMkLtVrkld-------Gs~f~V~V~~sATV~DLKkAI~~~f~~~pe-----~g~qkISW~~VWk~fcLi~~G~KLld 108 (205)
++.|+|+|+-.- .....++++..+||.||.+.+...+..... .|. +...+.+.-+| ....
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~-------~~~~v~v~VNg-~~v~ 78 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYD-------EDADVNIAVNG-RYVS 78 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSC-------TTSSBEEEETT-BCCC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccc-------cCCcEEEEECC-EECC
Confidence 689999997542 245678888889999999999887531110 010 11223333455 3333
Q ss_pred CcchhcccCCCCCCEEEEEEecc
Q 040719 109 DKTHIRDFRMKDGDELQFSRHMS 131 (205)
Q Consensus 109 D~ktLsdyGIkDGd~L~Fk~rl~ 131 (205)
.++-+++||+|.|.+-++
T Consensus 79 -----~~~~L~dGDeV~i~ppv~ 96 (98)
T 1vjk_A 79 -----WDEELKDGDVVGVFPPVS 96 (98)
T ss_dssp -----TTCBCCTTCEEEEESCC-
T ss_pred -----CCCCCCCCCEEEEECCCC
Confidence 256799999999987654
No 116
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=94.62 E-value=0.46 Score=36.73 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=57.4
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe--eCCeee--cCCcchhccc
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC--YDGRKL--VNDKTHIRDF 116 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi--~~G~KL--ldD~ktLsdy 116 (205)
....+|.|+.-||+.+.-....+.||.+|...|... ... +..|.|+ |-.+.| .+.+.+|.+.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~-------------~~~F~L~t~fPrk~l~~~d~~~TL~e~ 106 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYP-------------NERFELLTNFPRRKLSHLDYDITLQEA 106 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCC-------------TTTEEEECSSSCCEETSSCSSSCTTTT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCC-------------CCCeEEecCCCCcCCccCCCCCCHHHC
Confidence 457899999999999888889999999999999875 221 1235555 345556 3568999999
Q ss_pred CCCCCCEEEEEEe
Q 040719 117 RMKDGDELQFSRH 129 (205)
Q Consensus 117 GIkDGd~L~Fk~r 129 (205)
|+.+...|++...
T Consensus 107 gL~psa~Liv~~~ 119 (124)
T 1wj4_A 107 GLCPQETVFVQES 119 (124)
T ss_dssp TCCSSBCCEEEEC
T ss_pred CCCCceEEEEEEc
Confidence 9999887877654
No 117
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.37 E-value=0.2 Score=40.47 Aligned_cols=98 Identities=12% Similarity=0.243 Sum_probs=52.1
Q ss_pred cCCCCeEEEEEecCC------cEEEEEeCCCCcHHHHHHHHHHHh-ccCCC-----CCCCccccccccc-ceEEeeCC--
Q 040719 39 LPQPRIRLSVLKLDG------SRFDVYIERNATVGELRQAIEEVF-TLSPT-----EGQGKISWTNVWG-HFCLCYDG-- 103 (205)
Q Consensus 39 l~~~aMkLtVrkldG------s~f~V~V~~sATV~DLKkAI~~~f-~~~pe-----~g~qkISW~~VWk-~fcLi~~G-- 103 (205)
++-.+|+|.|.-.+| ..++|.|-.-.||.++|+.|-..+ +..|- ...--+-|+.==. ...|.-..
T Consensus 20 vey~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~t 99 (138)
T 2r2o_A 20 VEYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVT 99 (138)
T ss_dssp --CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTT
T ss_pred ceeEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCc
Confidence 344678888866533 458999998999999999888876 22221 1111223432110 11111100
Q ss_pred eeecC---CcchhcccCCCCCCEEEEEEeccccccc
Q 040719 104 RKLVN---DKTHIRDFRMKDGDELQFSRHMSLDYLH 136 (205)
Q Consensus 104 ~KLld---D~ktLsdyGIkDGd~L~Fk~rl~~~~~~ 136 (205)
.++.. --.||..|+|.||.+|.++++.+..|+.
T Consensus 100 S~~~~~wkrLNTL~HY~V~Dga~l~l~~~~~~~~~~ 135 (138)
T 2r2o_A 100 SEVQGLWRRLNTLQHYKVPDGATVALVPCLTKHVLR 135 (138)
T ss_dssp CCEETTEEECCBHHHHTCCTTCEEEEEEC-------
T ss_pred ccccCCceeecchhccCCCCCCEEEEEECCCccccc
Confidence 00000 0138999999999999999998877754
No 118
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.14 E-value=0.29 Score=42.87 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=54.2
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCC---e--eecCCcchhcccC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG---R--KLVNDKTHIRDFR 117 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G---~--KLldD~ktLsdyG 117 (205)
+|.|.|.-- +..-.+..+++.||+|.-+.|.++++....+ -|..|.|.-.. + .-++.+.+|..||
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~---------~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~ 72 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAG---------PPNDFGLFLSDDDPKKGIWLEAGKALDYYM 72 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSS---------CGGGEEEEECCSSGGGCEECCTTSBGGGGT
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCC---------CHHHCeEeccCCCCCcCEeccCCCCHHHhC
Confidence 445555333 7777888999999999999999987432111 25667776622 1 2245677999999
Q ss_pred CCCCCEEEEEEe
Q 040719 118 MKDGDELQFSRH 129 (205)
Q Consensus 118 IkDGd~L~Fk~r 129 (205)
+.+|+.+.|.++
T Consensus 73 ~~~~~~l~~~~~ 84 (371)
T 3ivf_A 73 LRNGDTMEYRKK 84 (371)
T ss_dssp CCTTCEEEEEEC
T ss_pred CCCCceeeccCc
Confidence 999999998754
No 119
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.63 E-value=0.26 Score=38.12 Aligned_cols=69 Identities=13% Similarity=0.297 Sum_probs=53.2
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe--eCCeeecCCcchhcccCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC--YDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi--~~G~KLldD~ktLsdyGIk 119 (205)
...+|.|+.-||+.+.-....+.||.+|..-|....... -+..|.|+ |-.+.|.+++.||.+.|+.
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~------------~~~~f~L~t~fPrk~l~d~~~TL~eagL~ 118 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAM------------AATSFVLMTTFPNKELADENQTLKEANLL 118 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGG------------GTSCEEEEETTTTEECCSTTCBHHHHTCS
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCC------------CCCCeEEecCCCCCCCCCCCCcHHHCCCc
Confidence 478999999999998888899999999999999874211 12345555 4455666678999999999
Q ss_pred CCC
Q 040719 120 DGD 122 (205)
Q Consensus 120 DGd 122 (205)
+..
T Consensus 119 psa 121 (127)
T 1s3s_G 119 NAV 121 (127)
T ss_dssp SCE
T ss_pred Cce
Confidence 854
No 120
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.26 E-value=0.49 Score=36.78 Aligned_cols=81 Identities=15% Similarity=0.271 Sum_probs=50.1
Q ss_pred CCCeEEEEEec--CCcEEEEEeCCCCcHHHHHHHHHHHhc-cCC-----CCCCCcccccccccceEEeeCCeeecCC---
Q 040719 41 QPRIRLSVLKL--DGSRFDVYIERNATVGELRQAIEEVFT-LSP-----TEGQGKISWTNVWGHFCLCYDGRKLVND--- 109 (205)
Q Consensus 41 ~~aMkLtVrkl--dGs~f~V~V~~sATV~DLKkAI~~~f~-~~p-----e~g~qkISW~~VWk~fcLi~~G~KLldD--- 109 (205)
-.+|+|.|.-. ++..++|.|-.-.||.+.|+.|-..+- ..| ....-.+-|+.== .|. ++.|
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~-------~~~-iL~D~D~ 80 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGS-------TAQ-ILSDLDL 80 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--C-------CCE-ECCSSCT
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCC-------CCc-cccccCc
Confidence 45677777543 345688888888999999998888762 111 1111223343200 122 2222
Q ss_pred ----------cchhcccCCCCCCEEEEEEe
Q 040719 110 ----------KTHIRDFRMKDGDELQFSRH 129 (205)
Q Consensus 110 ----------~ktLsdyGIkDGd~L~Fk~r 129 (205)
=.||..|+|.||.+|-++++
T Consensus 81 ts~~~~~wkrLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 81 TSQREGRWKRVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp TSCC---CCCCCBHHHHTCCTTCEEEEEEC
T ss_pred cceecCcceEecchhhcCCCCCCEEEEEeC
Confidence 15899999999999999876
No 121
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=92.77 E-value=1.2 Score=30.56 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=43.3
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
.|+|+|.-.. ....++++..+||.||.+.+. ..+. .+....+|.-+ ..+. -+++||
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l~----~~~~-------------~v~vavN~~~v-~~~~-----~L~~gD 59 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGELE----IPIE-------------TVVVKKNGQIV-IDEE-----EIFDGD 59 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHTT----CCTT-------------TEEEEETTEEC-CTTS-----BCCTTC
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHhC----CCCC-------------CEEEEECCEEC-CCcc-----cCCCCC
Confidence 4888884333 334677888899999998763 2222 13456677444 3322 599999
Q ss_pred EEEEEEeccc
Q 040719 123 ELQFSRHMSL 132 (205)
Q Consensus 123 ~L~Fk~rl~~ 132 (205)
+|-|.+-++.
T Consensus 60 ~V~ii~~V~G 69 (70)
T 1ryj_A 60 IIEVIRVIYG 69 (70)
T ss_dssp EEEEEECTTC
T ss_pred EEEEEecccc
Confidence 9999886653
No 122
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=92.59 E-value=0.79 Score=39.01 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=57.3
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEee--CCee-ecCCcchhcccC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCY--DGRK-LVNDKTHIRDFR 117 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~--~G~K-LldD~ktLsdyG 117 (205)
+..|.+.|...|| .+.|.|..++|+.||=..|...+...... -|.|.| +|.. -++.+++|.+.+
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~------------~FgL~~~~~~~~~wL~~~~~i~~q~ 86 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETW------------FFGLQYTIKDTVAWLKMDKKVLDHD 86 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGG------------GEEEEEEETTEEEECCTTSBGGGSS
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCc------------cceEEEEeCCcCeeCCCccCHHHcC
Confidence 5689999999999 78899999999999999999998553211 255555 4433 367778898888
Q ss_pred CCCCCE--EEEEEecc
Q 040719 118 MKDGDE--LQFSRHMS 131 (205)
Q Consensus 118 IkDGd~--L~Fk~rl~ 131 (205)
++.+.. ++|.++.=
T Consensus 87 ~~~~~~~~l~fr~kf~ 102 (314)
T 1h4r_A 87 VSKEEPVTFHFLAKFY 102 (314)
T ss_dssp CCCSSSEEEEEEESSC
T ss_pred CCCCCCEEEEEEEEEe
Confidence 766554 56666553
No 123
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=92.52 E-value=0.64 Score=34.81 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=55.7
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEe--eCCeeec-CCcchhcccCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLC--YDGRKLV-NDKTHIRDFRM 118 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi--~~G~KLl-dD~ktLsdyGI 118 (205)
+..+|.|+.-||+.+.-.-..+.||.+|...|...- . .+..|.|+ |-.+.|. +.+.||.+.||
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~-~-------------~~~~f~L~t~fPrk~l~~d~~~TL~e~gL 87 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG-Y-------------HKSLYRLSTSFPRRALEVEGGSSLEDIGI 87 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHT-C-------------CTTTEEEECSSSCCBCCCCSSCBHHHHTC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcC-C-------------CCCCeEEEeCCCCcCCCCCCCCCHHHcCC
Confidence 368999999999988777788999999999999641 1 12345554 4455664 56899999999
Q ss_pred CCCCEEEEEEe
Q 040719 119 KDGDELQFSRH 129 (205)
Q Consensus 119 kDGd~L~Fk~r 129 (205)
.+...|.+..+
T Consensus 88 ~p~a~L~Ve~~ 98 (109)
T 2cr5_A 88 TVDTVLNVEEK 98 (109)
T ss_dssp SSCEEEEEEEC
T ss_pred CCCeEEEEEeC
Confidence 99987766553
No 124
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=92.30 E-value=0.52 Score=36.03 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=51.1
Q ss_pred CCeEEEEEecCC--------cEEEEEeC---CCCcHHHHHHHHHHHhccC-C----CCCCCcccccccccceEEeeCCee
Q 040719 42 PRIRLSVLKLDG--------SRFDVYIE---RNATVGELRQAIEEVFTLS-P----TEGQGKISWTNVWGHFCLCYDGRK 105 (205)
Q Consensus 42 ~aMkLtVrkldG--------s~f~V~V~---~sATV~DLKkAI~~~f~~~-p----e~g~qkISW~~VWk~fcLi~~G~K 105 (205)
..|+|+|+-..+ +...|+++ ..+||.||-..+.+.+..- + +.|. + +.|++++-+.
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~-------l-r~~i~VlVN~- 80 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS-------V-RPGILVLIND- 80 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSS-------C-CSSEEEEESS-
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCc-------c-cCCeEEEECC-
Confidence 459999875433 24568888 3479999999998876211 0 1111 1 1234444220
Q ss_pred ecCCcchhc--ccCCCCCCEEEEEEeccccccc
Q 040719 106 LVNDKTHIR--DFRMKDGDELQFSRHMSLDYLH 136 (205)
Q Consensus 106 LldD~ktLs--dyGIkDGd~L~Fk~rl~~~~~~ 136 (205)
.|-..|. ++-+++||+|.|++-+...+.+
T Consensus 81 --~di~~l~gldt~L~dGDeV~iip~vaGG~~~ 111 (114)
T 1wgk_A 81 --ADWELLGELDYQLQDQDSILFISTLHGGSGP 111 (114)
T ss_dssp --SBHHHHCTTTCBCCSSEEEEEEECSCCCCCS
T ss_pred --eeeeccCCcCcCCCCCCEEEEeCCCCCCCCc
Confidence 1222333 5779999999999988877543
No 125
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=92.02 E-value=1.2 Score=32.35 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=43.8
Q ss_pred eEEEEEec-------C-CcEEEEEeC--CCCcHHHHHHHHHHHhccCCCCCCCccccccc--c------cceEEeeCCee
Q 040719 44 IRLSVLKL-------D-GSRFDVYIE--RNATVGELRQAIEEVFTLSPTEGQGKISWTNV--W------GHFCLCYDGRK 105 (205)
Q Consensus 44 MkLtVrkl-------d-Gs~f~V~V~--~sATV~DLKkAI~~~f~~~pe~g~qkISW~~V--W------k~fcLi~~G~K 105 (205)
|+|+|+-. + .+...++++ ..+||.||...+.+.+... |..+ + +.+++++-+..
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~---------~~~l~~~~~~~~lr~~~~v~VN~~ 72 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINN---------PNDVSIFIEDDSIRPGIITLINDT 72 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSS---------GGGHHHHEETTEECTTEEEEETTE
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchh---------hHHHhhhccCCccccCeEEEECCE
Confidence 56666532 2 245677777 6799999999998875210 1111 1 11233332212
Q ss_pred ecCCcchh--cccCCCCCCEEEEEEecc
Q 040719 106 LVNDKTHI--RDFRMKDGDELQFSRHMS 131 (205)
Q Consensus 106 LldD~ktL--sdyGIkDGd~L~Fk~rl~ 131 (205)
- -..+ -++-+++||+|.|.+-++
T Consensus 73 ~---~~~~~~~d~~L~dgDeVa~~Ppv~ 97 (99)
T 2qjl_A 73 D---WELEGEKDYILEDGDIISFTSTLH 97 (99)
T ss_dssp E---GGGGTGGGCBCCTTCEEEEEECTT
T ss_pred E---ccccCCCCcCcCCCCEEEEECCCC
Confidence 1 0112 245699999999987665
No 126
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.34 E-value=1.4 Score=33.42 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=62.4
Q ss_pred ccCCCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCC--eeecCCcchhcc
Q 040719 38 KLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG--RKLVNDKTHIRD 115 (205)
Q Consensus 38 al~~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G--~KLldD~ktLsd 115 (205)
.+|+...+|-|.-...+..-|-|.+.++..+|=-+|-++....|+. +.|.-.. ..-++-+++|.|
T Consensus 5 ~~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~-------------~~Ll~d~~~~e~LdLskSLnd 71 (91)
T 2daj_A 5 SSGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLH-------------TLLLKDYQSQEPLDLTKSLND 71 (91)
T ss_dssp SCCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTS-------------EEEESCSSCCCBCCTTSCHHH
T ss_pred CCCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhh-------------EEEecCCCCCcccchhcchhh
Confidence 4678899999987777888888999999999999999998777763 4555433 123478899999
Q ss_pred cCCCCCCEEEEEEeccccc
Q 040719 116 FRMKDGDELQFSRHMSLDY 134 (205)
Q Consensus 116 yGIkDGd~L~Fk~rl~~~~ 134 (205)
|||++ |+.+..-...|
T Consensus 72 lgirE---Lya~d~~~e~~ 87 (91)
T 2daj_A 72 LGLRE---LYAMDVNRESG 87 (91)
T ss_dssp HTCSE---EEEEECCCCCC
T ss_pred hhhhh---hheeccccccC
Confidence 99994 77766544444
No 127
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=90.73 E-value=0.71 Score=32.56 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=41.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhccC-----CCCCCCcccccccccceEEee-CCeeecCCcchhcccCCCCCCEEEEE
Q 040719 54 SRFDVYIERNATVGELRQAIEEVFTLS-----PTEGQGKISWTNVWGHFCLCY-DGRKLVNDKTHIRDFRMKDGDELQFS 127 (205)
Q Consensus 54 s~f~V~V~~sATV~DLKkAI~~~f~~~-----pe~g~qkISW~~VWk~fcLi~-~G~KLldD~ktLsdyGIkDGd~L~Fk 127 (205)
....++++..+||.||.+++...+... .+.|. ++.++.++ +| ..... ++-+++||+|.|.
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~--------l~~~~~v~VN~-~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGE--------LYDHINVLRNG-EAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSC--------BCTTSEEEETT-EECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCc--------ccccEEEEECC-EECCC-----CcccCCCCEEEEE
Confidence 456788888899999999998875311 11110 12223444 44 44332 4569999999998
Q ss_pred Eeccc
Q 040719 128 RHMSL 132 (205)
Q Consensus 128 ~rl~~ 132 (205)
+-++.
T Consensus 84 Ppv~G 88 (89)
T 3po0_A 84 PPVSG 88 (89)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 76653
No 128
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=90.61 E-value=1.7 Score=37.94 Aligned_cols=79 Identities=14% Similarity=0.271 Sum_probs=58.6
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCC--------eeecCCcch
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG--------RKLVNDKTH 112 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G--------~KLldD~kt 112 (205)
...+.+.|...||+...|.|+.++|+.||=..|.......... -|.|.+.. ..-++-.++
T Consensus 83 ~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~------------~FgL~~~~~~~~~~~~~~wL~~~k~ 150 (371)
T 3ivf_A 83 KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHD------------EYSLVRELMEEKKDDELNWLDHGRT 150 (371)
T ss_dssp ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGG------------GEEEECCC----------CCCTTSB
T ss_pred CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcc------------ccEEEEEecccccchHHHHHhcCch
Confidence 3568999999999999999999999999999999987543211 36665532 123455677
Q ss_pred hcccCCCCCCEEEEEEecc
Q 040719 113 IRDFRMKDGDELQFSRHMS 131 (205)
Q Consensus 113 LsdyGIkDGd~L~Fk~rl~ 131 (205)
|.+.|+...-.++|.++.=
T Consensus 151 l~~q~~~~~~~l~frvKf~ 169 (371)
T 3ivf_A 151 LREQGVEEHETLLLRRKFF 169 (371)
T ss_dssp TGGGTCCTTCEEEEEECCC
T ss_pred hHhhCCCCCceEEEEEEEe
Confidence 8888877777899976653
No 129
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=90.37 E-value=1 Score=33.06 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=42.2
Q ss_pred CCeEEEEEecCCcEEEEEeCCC-CcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERN-ATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~s-ATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
..|+|+| +|+. ++++.. +||.||-+.+. ..+.. +.+..+|+-+ . .....+.-+++
T Consensus 19 ~~M~I~v---NGe~--~el~~~~~Tv~dLL~~L~----~~~~~-------------vaVavNg~iV-~-~~~~~~~~L~d 74 (87)
T 1tyg_B 19 GRHMLQL---NGKD--VKWKKDTGTIQDLLASYQ----LENKI-------------VIVERNKEII-G-KERYHEVELCD 74 (87)
T ss_dssp ---CEEE---TTEE--ECCSSSCCBHHHHHHHTT----CTTSC-------------CEEEETTEEE-C-GGGTTTSBCCS
T ss_pred cceEEEE---CCEE--EECCCCCCcHHHHHHHhC----CCCCC-------------EEEEECCEEC-C-hhhcCCcCCCC
Confidence 4677776 7776 455777 99999988763 22221 3455667443 2 33455667999
Q ss_pred CCEEEEEEecc
Q 040719 121 GDELQFSRHMS 131 (205)
Q Consensus 121 Gd~L~Fk~rl~ 131 (205)
||+|-|++-+.
T Consensus 75 GD~Vei~~~V~ 85 (87)
T 1tyg_B 75 RDVIEIVHFVG 85 (87)
T ss_dssp SSEEEEEEECC
T ss_pred CCEEEEEcccc
Confidence 99999987664
No 130
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=89.59 E-value=1.5 Score=34.22 Aligned_cols=91 Identities=15% Similarity=0.256 Sum_probs=52.4
Q ss_pred CCCeEEEEEecC---CcEEEEEeCCCCcHHHHHHHHHHHh-ccCC-----CCCCCccccccc-ccceEEeeCC--eeecC
Q 040719 41 QPRIRLSVLKLD---GSRFDVYIERNATVGELRQAIEEVF-TLSP-----TEGQGKISWTNV-WGHFCLCYDG--RKLVN 108 (205)
Q Consensus 41 ~~aMkLtVrkld---Gs~f~V~V~~sATV~DLKkAI~~~f-~~~p-----e~g~qkISW~~V-Wk~fcLi~~G--~KLld 108 (205)
-.+|+|.|.-.+ ...++|.|-.-.||.+.|+.|-..+ +..| ....-.+-|+.= =+++.|.-.. .++.+
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence 456777775433 3458888888899999999888776 2211 111122334331 1122221100 01110
Q ss_pred ---CcchhcccCCCCCCEEEEEEecc
Q 040719 109 ---DKTHIRDFRMKDGDELQFSRHMS 131 (205)
Q Consensus 109 ---D~ktLsdyGIkDGd~L~Fk~rl~ 131 (205)
--.||..|+|.||.+|.+++|-+
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~~~~~ 116 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALVSKQV 116 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEEECCC
T ss_pred cceEeccccccCCCCCCEEEEEeCCc
Confidence 11589999999999999988754
No 131
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=89.33 E-value=1.5 Score=37.48 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=56.7
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeC---C-eeecCCcchhccc
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYD---G-RKLVNDKTHIRDF 116 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~---G-~KLldD~ktLsdy 116 (205)
...|.+.|..+||+...+.|+.++|+.||=..|.......... -|-|.+. | ...++..++|.+.
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~------------~FgL~~~~~~~~~~wLd~~k~i~~q 82 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEED------------YFGLAIWDNATSKTWLDSAKEIKKQ 82 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGG------------GEEEEEEEETTEEEECCTTSBHHHH
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcc------------eeEEEEEcCCCccchhccchhHHHh
Confidence 4579999999999999999999999999999999998654221 1444442 3 2345667778777
Q ss_pred CCCCCCEEEEEEeccc
Q 040719 117 RMKDGDELQFSRHMSL 132 (205)
Q Consensus 117 GIkDGd~L~Fk~rl~~ 132 (205)
+....-.++|.++.=.
T Consensus 83 ~~~~~~~l~frvkfy~ 98 (296)
T 3qij_A 83 VRGVPWNFTFNVKFYP 98 (296)
T ss_dssp C---CCEEEEEESSCC
T ss_pred cCCCCcEEEEEEEEeC
Confidence 5544557888887754
No 132
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=89.33 E-value=1.2 Score=30.08 Aligned_cols=65 Identities=14% Similarity=0.252 Sum_probs=41.5
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+| +|+.+ +++..+||.||-+.+. ..+. .+.+..+| .+.. .....+.-+++||+
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l~----~~~~-------------~v~vavN~-~~v~-~~~~~~~~L~~gD~ 56 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQLD----QRQA-------------GAALAINQ-QIVP-REQWAQHIVQDGDQ 56 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHHT----CCCS-------------SEEEEETT-EEEC-HHHHTTCCCCTTEE
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHcC----CCCC-------------CEEEEECC-EECC-chhcCCcCCCCCCE
Confidence 55555 77764 5578899999998773 2222 13444566 4432 23344567999999
Q ss_pred EEEEEeccc
Q 040719 124 LQFSRHMSL 132 (205)
Q Consensus 124 L~Fk~rl~~ 132 (205)
|.|.+-++.
T Consensus 57 v~i~~~V~G 65 (66)
T 1f0z_A 57 ILLFQVIAG 65 (66)
T ss_dssp ECEEESCCC
T ss_pred EEEEeeccc
Confidence 999886653
No 133
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=89.29 E-value=3 Score=34.90 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=55.4
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEee---CCe-eecCCcchhcccCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCY---DGR-KLVNDKTHIRDFRM 118 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~---~G~-KLldD~ktLsdyGI 118 (205)
+|.|.|...|| .+.+.|..++|+.||=..|.......... -|.|.+ +|. ..++.+++|.+.++
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~------------~FgL~~~~~~~~~~wLd~~~~l~~q~~ 67 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVW------------FFGLQYQDTKGFSTWLKLNKKVTAQDV 67 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGG------------GEEEEEEBTTSCEEECCSSSBGGGSCB
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcc------------eeEEEEECCCCceeecccccCHHhhcc
Confidence 47899999998 67899999999999999999998553221 266665 332 33567788888877
Q ss_pred CCCCE--EEEEEeccc
Q 040719 119 KDGDE--LQFSRHMSL 132 (205)
Q Consensus 119 kDGd~--L~Fk~rl~~ 132 (205)
+.+.. ++|.++.=.
T Consensus 68 ~~~~~~~l~fr~kf~~ 83 (294)
T 1ef1_A 68 RKESPLLFKFRAKFYP 83 (294)
T ss_dssp CCCSSEEEEEEESSCC
T ss_pred CCCCCEEEEEEEEEEC
Confidence 66554 666666543
No 134
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=87.07 E-value=1.6 Score=30.07 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=39.9
Q ss_pred eEEEEEecCCcE-EEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 44 IRLSVLKLDGSR-FDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 44 MkLtVrkldGs~-f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
|+|+|+-...-. -.+++ ..+||.||.+.+... +.- . .+-..+.+.-+| ....+ .+.-+++||
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~----~~l--~-----~~l~~~~vavN~-~~v~~----~~~~l~~gD 63 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEK----EGL--K-----EWLGVCAIALND-HLIDN----LNTPLKDGD 63 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTC----TTT--T-----TTTTTCEEEESS-SEECC----TTCCCCTTC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHC----cCH--H-----HHhhccEEEECC-EEcCC----CCcCCCCCC
Confidence 555554332211 23556 578999999999753 110 0 011222333344 33222 245699999
Q ss_pred EEEEEEeccc
Q 040719 123 ELQFSRHMSL 132 (205)
Q Consensus 123 ~L~Fk~rl~~ 132 (205)
+|.|.+-++.
T Consensus 64 eV~i~PpvsG 73 (74)
T 3rpf_C 64 VISLLPPVCG 73 (74)
T ss_dssp EEEEECCBCC
T ss_pred EEEEECCCCC
Confidence 9999887654
No 135
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=86.46 E-value=7.1 Score=30.97 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=48.9
Q ss_pred CeEEEEEe--cCCcEEEEEeCCCCcHHHHHHHHHHHhc-cCC-----CCCCCcccccccc-cceEEee-CC-eeecC---
Q 040719 43 RIRLSVLK--LDGSRFDVYIERNATVGELRQAIEEVFT-LSP-----TEGQGKISWTNVW-GHFCLCY-DG-RKLVN--- 108 (205)
Q Consensus 43 aMkLtVrk--ldGs~f~V~V~~sATV~DLKkAI~~~f~-~~p-----e~g~qkISW~~VW-k~fcLi~-~G-~KLld--- 108 (205)
+|+|.+.- .++..++|.|-.-.||.+.|+.|-..+- ..| ....-.+-|+.== +++.|.- +. .++..
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 34555542 3456688888888999999998888762 111 1111222232100 0111111 00 01110
Q ss_pred CcchhcccCCCCCCEEEEEEeccc
Q 040719 109 DKTHIRDFRMKDGDELQFSRHMSL 132 (205)
Q Consensus 109 D~ktLsdyGIkDGd~L~Fk~rl~~ 132 (205)
--.||..|+|.||.+|-++++.+.
T Consensus 84 rLNTL~HY~V~dgatv~l~~~~~~ 107 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSLIDKK 107 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEECC--
T ss_pred EeccccccCCCCCCEEEEEEcccc
Confidence 115899999999999999877543
No 136
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=86.28 E-value=0.8 Score=32.60 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=37.9
Q ss_pred EEEeCCCCcHHHHHHHHHHHhccC-----CC--CCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEe
Q 040719 57 DVYIERNATVGELRQAIEEVFTLS-----PT--EGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRH 129 (205)
Q Consensus 57 ~V~V~~sATV~DLKkAI~~~f~~~-----pe--~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~r 129 (205)
.|++ ..+||.||..++...+... .+ .| .++..+.+.-+| .......-+ ++-+++||+|.|.+-
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g-------~~~~~~~v~VN~-~~v~~~~~~-~~~L~~gDeV~i~Pp 89 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPG-------KLHRFVNIYVND-EDVRFSGGL-ATAIADGDSVTILPA 89 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTT-------SBCTTEEEEETT-EEGGGTTGG-GCBCCTTCEEEEEEC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCC-------cccCCEEEEECC-EEccCcCCC-CcCCCCCCEEEEECC
Confidence 4564 4689999999998875311 10 11 122223333455 333321112 456999999999987
Q ss_pred ccc
Q 040719 130 MSL 132 (205)
Q Consensus 130 l~~ 132 (205)
++.
T Consensus 90 v~G 92 (93)
T 3dwg_C 90 VAG 92 (93)
T ss_dssp CTT
T ss_pred CCC
Confidence 653
No 137
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=85.83 E-value=4.8 Score=39.45 Aligned_cols=114 Identities=15% Similarity=0.250 Sum_probs=60.5
Q ss_pred CcCCCccccCCCccccC-----CCCeEEEEEecCC------cEEEEEeCCCCcHHHHHHHHHHHh-ccCC-----CCCCC
Q 040719 24 DCYEGNSVRTMPYLKLP-----QPRIRLSVLKLDG------SRFDVYIERNATVGELRQAIEEVF-TLSP-----TEGQG 86 (205)
Q Consensus 24 ~~~~~~~~~~~s~~al~-----~~aMkLtVrkldG------s~f~V~V~~sATV~DLKkAI~~~f-~~~p-----e~g~q 86 (205)
|++-+-.+-+.+-.+|= ...|+|.|.-.+| ..++|.|-.-.||.+.|+.|-..+ +..| ....-
T Consensus 233 DaiTg~ArYtLsE~~LLre~ie~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~ 312 (644)
T 3hm6_X 233 DSVTGKAKYTLNDNRLLREDVEYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTL 312 (644)
T ss_dssp CTTTCCBSSCSCSSSBCCSCCCCCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGE
T ss_pred hhhhhhhhccccHHHhhhhhccceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCc
Confidence 44544555555555543 3578888876543 458899988899999999888664 2212 11112
Q ss_pred cccccccc-cceEEeeCC--eeecCC---cchhcccCCCCCCEEEEEEecccccccc
Q 040719 87 KISWTNVW-GHFCLCYDG--RKLVND---KTHIRDFRMKDGDELQFSRHMSLDYLHS 137 (205)
Q Consensus 87 kISW~~VW-k~fcLi~~G--~KLldD---~ktLsdyGIkDGd~L~Fk~rl~~~~~~~ 137 (205)
-+-|+.== ++..|.-.. .++..+ -.||..|+|.||.+|.++++....++..
T Consensus 313 dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dga~v~L~p~~~~~~~~~ 369 (644)
T 3hm6_X 313 DVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVPCLTKHVLRE 369 (644)
T ss_dssp EEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTTCEEEEEEC--------
T ss_pred ceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCCcEEEEEeccccccccc
Confidence 22343310 011111100 011000 1589999999999999999988877654
No 138
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=85.20 E-value=3.8 Score=30.41 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=47.4
Q ss_pred CeEEEEEecCCcEEEEEe-CCCCcHHHH-HHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 43 RIRLSVLKLDGSRFDVYI-ERNATVGEL-RQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V-~~sATV~DL-KkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+|||||+-. +..+-|.- +.+-||.+| ++|+.+..+..+.... +|-+|= .|-+.|-.|++.++.|.+- +.|
T Consensus 2 ~MKvtV~fg-~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~---~~v~V~---~l~~~~ggiLD~DD~l~dV-ldD 73 (85)
T 2ns5_A 2 EFKVTVCFG-RTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPN---YWIQVH---RLEHGDGGILDLDDILCDV-ADD 73 (85)
T ss_dssp CEEEEEEET-TEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTT---SCEEEE---EEECSSSCEECTTSCHHHH-SCT
T ss_pred ccEEEEEEC-CEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCC---cEEEEE---EEEeCCCcEeCcccchhhh-ccC
Confidence 799999555 66666655 335699999 5677777665554211 343321 1344455888888888887 557
Q ss_pred CCEEE
Q 040719 121 GDELQ 125 (205)
Q Consensus 121 Gd~L~ 125 (205)
+++|.
T Consensus 74 ~e~i~ 78 (85)
T 2ns5_A 74 KDRLV 78 (85)
T ss_dssp TEEEE
T ss_pred cceEE
Confidence 77653
No 139
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=84.43 E-value=9.6 Score=37.27 Aligned_cols=114 Identities=12% Similarity=0.204 Sum_probs=62.3
Q ss_pred CcCCCccccCCCccccC-----CCCeEEEEEecC---CcEEEEEeCCCCcHHHHHHHHHHHh-ccCC-----CCCCCccc
Q 040719 24 DCYEGNSVRTMPYLKLP-----QPRIRLSVLKLD---GSRFDVYIERNATVGELRQAIEEVF-TLSP-----TEGQGKIS 89 (205)
Q Consensus 24 ~~~~~~~~~~~s~~al~-----~~aMkLtVrkld---Gs~f~V~V~~sATV~DLKkAI~~~f-~~~p-----e~g~qkIS 89 (205)
|++-+=.+-+.+-.+|= ...|+|.|.-.+ ...++|.|-.-.||.+.|+.|-..+ +..| ....--+-
T Consensus 209 DaiTg~ArYtLnE~~LLre~ie~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLE 288 (627)
T 3ig3_A 209 DAITGEARYSLSEDKLIRQQIDYKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLE 288 (627)
T ss_dssp CTTTCCBTTCSSGGGBCCSCCCCCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEE
T ss_pred hhhhhhhhccccHhhhhhhhccceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCcccee
Confidence 44545555566655544 357888887544 3568999988999999999888775 2211 11112223
Q ss_pred ccccc-cceEEeeCC--eeecCC---cchhcccCCCCCCEEEEEEecccccccc
Q 040719 90 WTNVW-GHFCLCYDG--RKLVND---KTHIRDFRMKDGDELQFSRHMSLDYLHS 137 (205)
Q Consensus 90 W~~VW-k~fcLi~~G--~KLldD---~ktLsdyGIkDGd~L~Fk~rl~~~~~~~ 137 (205)
|++== ++..|.-.. .++..+ -.||..|+|.||.+|.++++....|+..
T Consensus 289 wr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dga~v~L~p~~~~~~~~~ 342 (627)
T 3ig3_A 289 WRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDGSLVALVPKQVSAYNMA 342 (627)
T ss_dssp EESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTTCEEEEEEC--------
T ss_pred EeeCCCCceeeccCCccccccCceeEecchhhcCCCCCceEEEEeccccccccc
Confidence 43211 111121100 011111 1589999999999999999998777654
No 140
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=83.69 E-value=2.6 Score=31.31 Aligned_cols=80 Identities=14% Similarity=0.258 Sum_probs=55.2
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
+++|+|.+ ...|..+-+.|+.+.|..+|.+.|...++..+. .+=.+.|+.=-+.+|.+.+..-| ...|+-|-+..
T Consensus 4 ~~~vkvK~-~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~-~~f~lky~DEeGD~itisSd~EL---~eAl~l~~~n~ 78 (89)
T 1vd2_A 4 GSQVRVKA-YYRGDIMITHFEPSISFEGLCNEVRDMCSFDNE-QLFTMKWIDEEGDPCTVSSQLEL---EEAFRLYELNK 78 (89)
T ss_dssp SSCEEEEE-ESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSS-CCEEEEECCSSSCCEECCSHHHH---HHHHHHHHHTS
T ss_pred CCeEEEEE-EeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCC-CeEEEEEECCCCCcccccCHHHH---HHHHHHHHccC
Confidence 46899999 667888888899999999999999999875433 22345666655667777666444 34455444444
Q ss_pred CCEEE
Q 040719 121 GDELQ 125 (205)
Q Consensus 121 Gd~L~ 125 (205)
..+|+
T Consensus 79 ~~~l~ 83 (89)
T 1vd2_A 79 DSELL 83 (89)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 44433
No 141
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=81.30 E-value=6.5 Score=37.25 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=56.3
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeC---C-eeecCCcchhcccC
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYD---G-RKLVNDKTHIRDFR 117 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~---G-~KLldD~ktLsdyG 117 (205)
..|.+.|...|| .+.|.|..++|+.||=..|...+...... -|.|.|. | ...++.+++|.+.+
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~------------~FGL~~~d~~~~~~WLd~~k~i~~q~ 69 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVW------------FFGLQYTDSKGDLTWIKLYKKVMQQD 69 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGG------------GEEEEEEBTTSCEEECCTTSBGGGSC
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCcc------------ceeEEEEecCcchhHhhccccHHHhc
Confidence 578999999998 67899999999999999999998553211 2556552 2 23466778888888
Q ss_pred CCCCCE--EEEEEeccc
Q 040719 118 MKDGDE--LQFSRHMSL 132 (205)
Q Consensus 118 IkDGd~--L~Fk~rl~~ 132 (205)
++.+.. ++|.++.=.
T Consensus 70 ~~~~~~~~L~FRvkfy~ 86 (575)
T 2i1j_A 70 VKKENPLQFKFRAKFYP 86 (575)
T ss_dssp BCCCSSEEEEEEESSCC
T ss_pred ccCCCCeEEEEEEEEcC
Confidence 776665 556665543
No 142
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=79.99 E-value=12 Score=29.67 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=51.2
Q ss_pred ccCCCCeEEEEEe---cCC------cEEEEEeCCCCcHHHHHHHHHHHhc---cCCCC---CCCcccccccccceEEeeC
Q 040719 38 KLPQPRIRLSVLK---LDG------SRFDVYIERNATVGELRQAIEEVFT---LSPTE---GQGKISWTNVWGHFCLCYD 102 (205)
Q Consensus 38 al~~~aMkLtVrk---ldG------s~f~V~V~~sATV~DLKkAI~~~f~---~~pe~---g~qkISW~~VWk~fcLi~~ 102 (205)
++.-.+|+|.|.. ..| ..++|.|-.-.||.+.|..|-..+- ..|.. ..-.+-|+.== ...+..+
T Consensus 14 ~vey~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~-~~~~L~D 92 (126)
T 3kuz_A 14 LYFQGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGT-RQKELLD 92 (126)
T ss_dssp ---CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETT-EEEEECS
T ss_pred ceeeEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCC-Ccceeec
Confidence 3344678888876 222 4588989888999999988876652 22221 11223343211 1111121
Q ss_pred C---eeecCC----cchhcccCCCCCCEEEEEEe
Q 040719 103 G---RKLVND----KTHIRDFRMKDGDELQFSRH 129 (205)
Q Consensus 103 G---~KLldD----~ktLsdyGIkDGd~L~Fk~r 129 (205)
. .++..+ -.||..|+|.||.+|-+.++
T Consensus 93 ~D~tS~~~e~~wkrLNTL~HY~V~Dgatlal~kk 126 (126)
T 3kuz_A 93 IDSSSVILEDGITKLNTIGHYEISNGSTIKVFKK 126 (126)
T ss_dssp SCTTCCBCTTSCBCCCBTGGGTCCTTCEEEEEEC
T ss_pred cCCcceEecCCeeEeccccccCCCCCCEEEEeeC
Confidence 1 111111 25889999999999987753
No 143
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=79.72 E-value=4.8 Score=26.79 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=42.5
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|.++|..-+|+. ++++..+|+.||-+.+...+.... .....+| ++.+- ++-+++|+.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~~~~---------------vaa~vNg-~lvdl-----~~~L~~~~~ 57 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLGDHC---------------IGAKVNH-KLVPL-----SYVLNSGDQ 57 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHHHTE---------------EEEEETT-EECCT-----TCBCCSSSB
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccccce---------------EEEEECC-EEeCC-----CcCcCCCCE
Confidence 667775557886 566889999999888754331110 1123456 44433 356788999
Q ss_pred EEEEEecccc
Q 040719 124 LQFSRHMSLD 133 (205)
Q Consensus 124 L~Fk~rl~~~ 133 (205)
|.|+.-....
T Consensus 58 Veivt~~~~~ 67 (73)
T 2kmm_A 58 VEVLSSKSLE 67 (73)
T ss_dssp EEEEECCCCC
T ss_pred EEEEECCCCc
Confidence 9998765544
No 144
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=78.69 E-value=7.4 Score=28.58 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=33.7
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTE 83 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~ 83 (205)
.|+|+|.-. -.+.|.|+.+++..+|...|.+++..+++.
T Consensus 5 ~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~ 43 (83)
T 1oey_A 5 AYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEH 43 (83)
T ss_dssp CEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGG
T ss_pred cEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcce
Confidence 589999777 578899999999999999999999776554
No 145
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=77.93 E-value=11 Score=27.37 Aligned_cols=83 Identities=11% Similarity=0.096 Sum_probs=42.9
Q ss_pred CeEEEEEecCCcE-----EEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccce-------EEeeCCeeecCCc
Q 040719 43 RIRLSVLKLDGSR-----FDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHF-------CLCYDGRKLVNDK 110 (205)
Q Consensus 43 aMkLtVrkldGs~-----f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~f-------cLi~~G~KLldD~ 110 (205)
.|+|+|+-...-. -.++++ .+||.||.+++...+...... -..+..+...+ .+.-+|+-+ ...
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~-~~tv~~ll~~L~~~~p~l~~~---l~~~g~l~~~v~~~~~~~~v~VNg~~v-~~~ 77 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS-GEKVIDVLLSLTDKYPALKYV---IFEKGDEKSEILILCGSINILINGNNI-RHL 77 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE-CSSHHHHHHHHHHHCGGGTTT---SBCSCCTTSSCCCBCSSCEEEETTSCG-GGT
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe-CCcHHHHHHHHHHHChhHHHH---HhcccccccceeccccccEEEECCEEc-ccc
Confidence 3778875442200 133444 689999999998875311110 00000011122 344455322 111
Q ss_pred chhcccCCCCCCEEEEEEecc
Q 040719 111 THIRDFRMKDGDELQFSRHMS 131 (205)
Q Consensus 111 ktLsdyGIkDGd~L~Fk~rl~ 131 (205)
. -.++-+++||+|.|.+-++
T Consensus 78 ~-~~~~~L~~gD~V~i~ppv~ 97 (99)
T 2l52_A 78 E-GLETLLKDSDEIGILPPVS 97 (99)
T ss_dssp T-STTSCCCTTEEEEEECCCS
T ss_pred C-CCCCCCCCCCEEEEECCCC
Confidence 0 1245699999999987665
No 146
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=76.64 E-value=8.7 Score=29.02 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=46.0
Q ss_pred ccCC-CCeEEEEEecCCcE--EEEEeCCCCcHHHHHHHHHHHhccCC-------------CCCCCcccccccccceEEee
Q 040719 38 KLPQ-PRIRLSVLKLDGSR--FDVYIERNATVGELRQAIEEVFTLSP-------------TEGQGKISWTNVWGHFCLCY 101 (205)
Q Consensus 38 al~~-~aMkLtVrkldGs~--f~V~V~~sATV~DLKkAI~~~f~~~p-------------e~g~qkISW~~VWk~fcLi~ 101 (205)
|++| ..++|+|...++.. |.|. +...|+.|+=++....-.... +...++ .||...
T Consensus 2 ~~~g~k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~~ve~e~s~~G~fITsI~G~~ad~~~~--------~yW~~~ 72 (101)
T 3u7z_A 2 ASEGEKHITVTVIHGDQTENVFEFD-TDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQ--------QWWCIT 72 (101)
T ss_dssp ---CCEEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTTCEEEECCTTSCEEEEETTEECCGGGT--------EEEEEE
T ss_pred CccceeEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcCccccccccccceEEEEcCEecCCCCC--------CEEEEE
Confidence 3453 47999999888866 6666 667888876655442111110 000122 344444
Q ss_pred CCeeecCCcchhcccCCCCCCEEEEEE
Q 040719 102 DGRKLVNDKTHIRDFRMKDGDELQFSR 128 (205)
Q Consensus 102 ~G~KLldD~ktLsdyGIkDGd~L~Fk~ 128 (205)
.+.++. ..-..+|-|+|||.+.|.-
T Consensus 73 vng~~~--~~Ga~~~~v~dGD~i~~~~ 97 (101)
T 3u7z_A 73 KGGEQV--NTSADQTPVSDGDAFELTL 97 (101)
T ss_dssp ETTEEC--CSCGGGCBCCTTCEEEEEE
T ss_pred ECCEEh--hhchhheEecCCCEEEEEE
Confidence 332443 3467789999999998864
No 147
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=76.43 E-value=13 Score=29.90 Aligned_cols=74 Identities=20% Similarity=0.325 Sum_probs=53.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccc----------cccccceEEeeCCeeecCCcchhcccCCCCCCEE
Q 040719 55 RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISW----------TNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDEL 124 (205)
Q Consensus 55 ~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW----------~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L 124 (205)
++.|-.=.+||+.||=..|.......+..|. +++. +|+-+.+-.++.|.+-.+|.+||.+.+..-||.|
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gt-rl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 133 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPEARKKGT-HFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYL 133 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGGGGSTTC-EEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCccccCCCC-EEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEE
Confidence 3555567899999999999998754333331 2222 3455556666777777789999999999999998
Q ss_pred EEEEe
Q 040719 125 QFSRH 129 (205)
Q Consensus 125 ~Fk~r 129 (205)
-+.+-
T Consensus 134 dvaI~ 138 (143)
T 4a6q_A 134 DIAIT 138 (143)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77763
No 148
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=76.33 E-value=6.4 Score=31.25 Aligned_cols=53 Identities=13% Similarity=0.327 Sum_probs=37.1
Q ss_pred CCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEee-CCeeec-------CCcchhcccCCCCCCEEEEEEe
Q 040719 63 NATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCY-DGRKLV-------NDKTHIRDFRMKDGDELQFSRH 129 (205)
Q Consensus 63 sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~-~G~KLl-------dD~ktLsdyGIkDGd~L~Fk~r 129 (205)
.||..+|=+.+..++.+..+ |.+.- ++.+|+ +-.++|.+.||++|..|++..-
T Consensus 19 ~~TL~dLV~~l~~~~gy~~e--------------iSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQD--------------ISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSS--------------EEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred ccCHHHHHHHHHHhcCCCCc--------------EEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 48999999888887744322 22321 233443 3458999999999999999875
No 149
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=76.21 E-value=5.5 Score=26.91 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=38.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEecc
Q 040719 54 SRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMS 131 (205)
Q Consensus 54 s~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~ 131 (205)
....++++..+||.||.+.+...+ |+ |..+ .+.+.-+|+-+ +. +.-+++||+|.|.+-++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~---p~-------~~~v--~~~v~vNg~~v-~~-----~~~L~~gD~V~i~ppv~ 75 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERY---PQ-------INNK--KFQVAVNEEFV-QK-----SDFIQPNDTVALIPPVS 75 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHC---GG-------GTTC--CCEEEETTEEE-CT-----TSEECTTCEEEEECSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC---cc-------hhcc--eEEEEECCEEC-CC-----CCCcCCCCEEEEECCCC
Confidence 345677788899999999988764 21 1112 12344566433 32 35699999999987654
No 150
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=75.67 E-value=5 Score=30.04 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=36.6
Q ss_pred EEEEecC-CcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeec
Q 040719 46 LSVLKLD-GSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLV 107 (205)
Q Consensus 46 LtVrkld-Gs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLl 107 (205)
|.|...+ ++...|.|...-||..||++|++...-+++. | -|+|+|+.|.
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~--Q-----------~LL~eg~~l~ 64 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSN--Q-----------ELIYEGRRLV 64 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGG--E-----------EEEETTEEEC
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHH--H-----------HHHhCCCccc
Confidence 3444443 3446788889999999999999998777664 3 4999996664
No 151
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=75.55 E-value=8 Score=26.99 Aligned_cols=66 Identities=14% Similarity=0.267 Sum_probs=43.9
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCE
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDE 123 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~ 123 (205)
|+|+| +|+.+++ ...||.||-+.+ ...++. +.+..+|.-+ ......++-+++||.
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~~l----~~~~~~-------------vAV~vNg~iV--pr~~~~~~~L~dGD~ 55 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMTEL----DCTGGH-------------FAVALNYDVV--PRGKWDETPVTAGDE 55 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHHHT----TCCSSS-------------CEEEESSSEE--CHHHHTTCBCCTTCE
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHHHc----CCCCCc-------------EEEEECCEEC--ChHHcCcccCCCCCE
Confidence 55655 7876554 568999997644 233332 3566677444 255666778999999
Q ss_pred EEEEEeccccc
Q 040719 124 LQFSRHMSLDY 134 (205)
Q Consensus 124 L~Fk~rl~~~~ 134 (205)
|-++.-+....
T Consensus 56 veIv~~VgGG~ 66 (73)
T 2kl0_A 56 IEILTPRQGGL 66 (73)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccccCCc
Confidence 99988776543
No 152
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=74.56 E-value=3.5 Score=31.29 Aligned_cols=82 Identities=13% Similarity=0.255 Sum_probs=44.7
Q ss_pred CeEEEEEecCC------cEEEEEeCC----CCcHHHHHHHHHHHhccC-C----CCCCCcccccccccceEEeeCCeeec
Q 040719 43 RIRLSVLKLDG------SRFDVYIER----NATVGELRQAIEEVFTLS-P----TEGQGKISWTNVWGHFCLCYDGRKLV 107 (205)
Q Consensus 43 aMkLtVrkldG------s~f~V~V~~----sATV~DLKkAI~~~f~~~-p----e~g~qkISW~~VWk~fcLi~~G~KLl 107 (205)
.|+|+|+-..| +...|+|+. .+||.||=+.+.+.+... + +.|. | .|...+.+.-+|
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~----~-~lrpgIlVLVNg---- 74 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTG----Q-TLRPGILVLVNS---- 74 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSS----S-SBCTTEEEEESS----
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCC----c-ccCCCeEEEECC----
Confidence 46777755443 334677773 369999988888865211 0 1110 0 011222222222
Q ss_pred CCcchhc--ccCCCCCCEEEEEEecccc
Q 040719 108 NDKTHIR--DFRMKDGDELQFSRHMSLD 133 (205)
Q Consensus 108 dD~ktLs--dyGIkDGd~L~Fk~rl~~~ 133 (205)
.|-..|. +|-+++||+|.|..-+...
T Consensus 75 ~d~e~l~gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 75 CDAEVVGGMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp SBHHHHTSSCCCCCSSCEEEEEECCCCC
T ss_pred eeeeccCCcccCCCCcCEEEEeCCCccc
Confidence 2222333 4779999999998766554
No 153
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=74.17 E-value=6.8 Score=26.65 Aligned_cols=60 Identities=25% Similarity=0.267 Sum_probs=36.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhccC---CCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEecc
Q 040719 55 RFDVYIERNATVGELRQAIEEVFTLS---PTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMS 131 (205)
Q Consensus 55 ~f~V~V~~sATV~DLKkAI~~~f~~~---pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~ 131 (205)
.+.++ +..+||.||.+++...+... ...+ .+.+.-+| .+.. .+.-+++||+|.|.+-++
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~-----------~~~v~vN~-~~v~-----~~~~l~~gD~V~i~Ppv~ 79 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDG-----------KLLAAVNQ-TLVS-----FDHPLTDGDEVAFFPPVT 79 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCT-----------TCEEEETT-EECC-----TTCBCCTTCEEEEECCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCC-----------CEEEEECC-EECC-----CCCCCCCCCEEEEeCCCC
Confidence 45555 67789999999987653210 0111 12344455 3333 245699999999987665
Q ss_pred c
Q 040719 132 L 132 (205)
Q Consensus 132 ~ 132 (205)
.
T Consensus 80 G 80 (81)
T 1fm0_D 80 G 80 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 154
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=72.41 E-value=4.2 Score=28.59 Aligned_cols=66 Identities=24% Similarity=0.386 Sum_probs=42.2
Q ss_pred eEEEEEecCCcE-EEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCC
Q 040719 44 IRLSVLKLDGSR-FDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGD 122 (205)
Q Consensus 44 MkLtVrkldGs~-f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd 122 (205)
|+|+|+-. |.. -.++++..+||+||=+. +..+++. ....-+|..+..|. +.+||
T Consensus 1 M~v~Vkl~-g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~-------------VvV~vNG~~v~~d~-------~l~GD 55 (74)
T 2l32_A 1 MNVTVEVV-GEETSEVAVDDDGTYADLVRA----VDLSPHE-------------VTVLVDGRPVPEDQ-------SVEVD 55 (74)
T ss_dssp CEEEEECS-SSSEEEEECSTTCSHHHHHHT----TCCCSSC-------------CCEECCCCCCCTTS-------SSCCC
T ss_pred CEEEEEEe-CccceeEEcCCCCcHHHHHHH----cCCCcce-------------EEEEECCEECCHHH-------CCCCC
Confidence 88888544 543 45889999999998543 3344443 23445665544433 44699
Q ss_pred EEEEEEeccccc
Q 040719 123 ELQFSRHMSLDY 134 (205)
Q Consensus 123 ~L~Fk~rl~~~~ 134 (205)
.|.+.+-++...
T Consensus 56 ~VeIv~~V~G~~ 67 (74)
T 2l32_A 56 RVKVLRLIKGGL 67 (74)
T ss_dssp CEEECSSCSCC-
T ss_pred EEEEEEeecccc
Confidence 999887776543
No 155
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=72.06 E-value=4.9 Score=30.17 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=39.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCccccccc--ccceEEeeCCe-ee-----cCCcchhcccCCCCCCEEEE
Q 040719 55 RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNV--WGHFCLCYDGR-KL-----VNDKTHIRDFRMKDGDELQF 126 (205)
Q Consensus 55 ~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~V--Wk~fcLi~~G~-KL-----ldD~ktLsdyGIkDGd~L~F 126 (205)
..+|+|+.++|+.||=+.+...-..+-.. + .| .+. -++--|...+- .| -+-.++|.+.|+.+|++|++
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~-P-Sl--tt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~V 81 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKS-P-AI--TATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAV 81 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSS-C-EE--EEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccC-C-ee--eeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEE
Confidence 34688899999999999888853221111 0 00 000 00011222221 11 13467899999999999988
Q ss_pred E
Q 040719 127 S 127 (205)
Q Consensus 127 k 127 (205)
-
T Consensus 82 t 82 (98)
T 1y8x_B 82 A 82 (98)
T ss_dssp E
T ss_pred E
Confidence 4
No 156
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=71.40 E-value=17 Score=24.93 Aligned_cols=64 Identities=11% Similarity=0.212 Sum_probs=36.8
Q ss_pred EEeCCCCcHHHHHHHHHHHhc------cCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEecc
Q 040719 58 VYIERNATVGELRQAIEEVFT------LSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMS 131 (205)
Q Consensus 58 V~V~~sATV~DLKkAI~~~f~------~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~ 131 (205)
++++..+||.||.+++...+. ...+.| +...+.+..+|+ ..... .-.+.-+++||+|.|.+-++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g--------~~~~v~v~vN~~-~v~~~-~~~~~~l~~gD~V~i~ppv~ 88 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNN--------LFKNVIILVNGN-NITSM-KGLDTEIKDDDKIDLFPPVA 88 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSC--------STTTCEEEESSS-BGGGT-CSSSCBCCTTCEEEEECCTT
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccC--------cCcceEEEECCE-Ecccc-CCCCcCCCCCCEEEEeCCCC
Confidence 456667899999999988742 110111 011233444553 32211 11244699999999987665
No 157
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=71.05 E-value=11 Score=28.57 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=33.5
Q ss_pred CCCCeEEEEEecC-------CcEEEEEeCCCCcHHHHHHHHHHHhccC
Q 040719 40 PQPRIRLSVLKLD-------GSRFDVYIERNATVGELRQAIEEVFTLS 80 (205)
Q Consensus 40 ~~~aMkLtVrkld-------Gs~f~V~V~~sATV~DLKkAI~~~f~~~ 80 (205)
|-++|+|.|.-.+ +..+.+.|+.+.+..||...|..+|...
T Consensus 2 ~~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 2 PLGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CSSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4567999997553 4468999999999999999999998643
No 158
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=68.59 E-value=8.4 Score=27.27 Aligned_cols=66 Identities=23% Similarity=0.386 Sum_probs=44.0
Q ss_pred eEEEEEecCCcEEEEEeC--CCCcHHHHHHHHHHHhccC-CCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCC
Q 040719 44 IRLSVLKLDGSRFDVYIE--RNATVGELRQAIEEVFTLS-PTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKD 120 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~--~sATV~DLKkAI~~~f~~~-pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkD 120 (205)
|+|+| +|+.+ +++ ...||.||-+.+. .. ++. +.+..+|.-+ ......++-+++
T Consensus 1 M~I~v---NGe~~--e~~~~~~~Tl~~LL~~l~----~~~~~~-------------vAVavNg~iV--pr~~~~~~~L~d 56 (78)
T 2k5p_A 1 MNLTV---NGKPS--TVDGAESLNVTELLSALK----VAQAEY-------------VTVELNGEVL--EREAFDATTVKD 56 (78)
T ss_dssp CEEEE---TTEEE--ECSSCSCEEHHHHHHHHT----CSCTTT-------------CCEEETTEEC--CTTHHHHCEECS
T ss_pred CEEEE---CCEEE--EcCCCCCCcHHHHHHHcC----CCCCCc-------------EEEEECCEEC--ChHHcCcccCCC
Confidence 66666 78764 456 7789999977553 22 222 3466777444 245666778999
Q ss_pred CCEEEEEEecccc
Q 040719 121 GDELQFSRHMSLD 133 (205)
Q Consensus 121 Gd~L~Fk~rl~~~ 133 (205)
||.|-++.-+...
T Consensus 57 GD~IEIv~~VgGG 69 (78)
T 2k5p_A 57 GDAVEFLYFMGGG 69 (78)
T ss_dssp SBCEEECCCCCCS
T ss_pred CCEEEEEeeecCC
Confidence 9999888766544
No 159
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=67.05 E-value=23 Score=23.49 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=38.6
Q ss_pred ecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEe
Q 040719 50 KLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRH 129 (205)
Q Consensus 50 kldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~r 129 (205)
..+|+.++ + ..+||.||-+.+. ..+. .+.+..+|+-+ . ...-.+.-+++||+|.|.+-
T Consensus 3 ~vNg~~~~--~-~~~tv~~ll~~l~----~~~~-------------~v~vavN~~~v-~-~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 3 WLNGEPRP--L-EGKTLKEVLEEMG----VELK-------------GVAVLLNEEAF-L-GLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp EETTEEEC--C-TTCCHHHHHHHHT----BCGG-------------GEEEEETTEEE-E-GGGCCCCCCCTTCEEEEEEC
T ss_pred EECCEEEE--c-CCCcHHHHHHHcC----CCCC-------------cEEEEECCEEC-C-ccccCCcCCCCCCEEEEEee
Confidence 34777754 4 6789999988773 1222 13445566433 2 22334556999999999986
Q ss_pred ccc
Q 040719 130 MSL 132 (205)
Q Consensus 130 l~~ 132 (205)
++.
T Consensus 61 V~G 63 (64)
T 2cu3_A 61 MQG 63 (64)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 160
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=61.17 E-value=27 Score=25.98 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=33.0
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhcc
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTL 79 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~ 79 (205)
++|||.+ --++.-|-|-||.+.+..||+..|......
T Consensus 11 ~~~KVK~-yy~DDIiAIrvP~di~~~~L~dKi~~RLk~ 47 (85)
T 1ip9_A 11 KTTKIKF-YYKDDIFALMLKGDTTYKELRSKIAPRIDT 47 (85)
T ss_dssp CCEEEEE-CBTTCCEEEEECSCCCHHHHHHHHHHHHTS
T ss_pred CceEEEE-EecCcEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999 666789999999999999999999998754
No 161
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=57.52 E-value=33 Score=31.71 Aligned_cols=78 Identities=19% Similarity=0.340 Sum_probs=47.8
Q ss_pred CeEEEEEecC-CcEEEEEeCCCCcHHHHHHHHHHH--hcc----CCC-------CCCCcccccccccceEEeeCC-eeec
Q 040719 43 RIRLSVLKLD-GSRFDVYIERNATVGELRQAIEEV--FTL----SPT-------EGQGKISWTNVWGHFCLCYDG-RKLV 107 (205)
Q Consensus 43 aMkLtVrkld-Gs~f~V~V~~sATV~DLKkAI~~~--f~~----~pe-------~g~qkISW~~VWk~fcLi~~G-~KLl 107 (205)
.++++|...+ -..+.|.|+.+.|+.+.=++.++. |.+ .+. .|.. .. =++||..+.+ .+.+
T Consensus 318 ~VtytV~~~~~~~~~~Vtv~~gssll~vLk~A~e~~~F~F~~~es~~G~fItSInG~~----~~-~~~YW~l~~~p~~pl 392 (414)
T 2bb6_A 318 DVLLKVSGISPSYRHSVSVPAGSSLEDILKNAQEHGRFRFRTQASLSGPFLTSVLGRK----AG-EREFWQVLRDPDTPL 392 (414)
T ss_dssp EEEEEEESSSSCEEEEEEEETTCCHHHHHHHHHHSSSCCEEEECCTTSCEEEEETTEE----CC-TTEEEEEEETTTEEC
T ss_pred EEEEEEeeCCCccceEEEecCCCCHHHHHHHHHhccCCceEeeecCCCceEEEECCCc----cC-CCceEEEEECCCCcc
Confidence 3555665322 233789999999999987777775 211 110 0100 01 2467777766 2332
Q ss_pred CCcchhcccCCCCCCEEEEE
Q 040719 108 NDKTHIRDFRMKDGDELQFS 127 (205)
Q Consensus 108 dD~ktLsdyGIkDGd~L~Fk 127 (205)
..=..+|.++||+.|.|.
T Consensus 393 --~~Gv~~y~~~~ge~I~f~ 410 (414)
T 2bb6_A 393 --QQGIADYRPKDGETIELR 410 (414)
T ss_dssp --SSCTTTCCCCTTCEEEEE
T ss_pred --cccccceecCCCCEEEEE
Confidence 355788999999999885
No 162
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=53.86 E-value=30 Score=26.46 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=33.8
Q ss_pred CCccccC--CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccC
Q 040719 34 MPYLKLP--QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLS 80 (205)
Q Consensus 34 ~s~~al~--~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~ 80 (205)
..+.+.+ ...+.|.+.--+|--+.+.|+.++|+.|+|..+-+..+.+
T Consensus 8 ~~~W~~~~~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~ 56 (108)
T 2v1y_A 8 GELWGIHLMPPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKY 56 (108)
T ss_dssp --------CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGS
T ss_pred cccccccCCCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhC
Confidence 4455553 4578899988999999999999999999999777765444
No 163
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=49.79 E-value=42 Score=23.72 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=39.4
Q ss_pred EEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEE
Q 040719 45 RLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDEL 124 (205)
Q Consensus 45 kLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L 124 (205)
.|+|..-+|+. ++++..+|+.|+=.+|...+.... ..-..+| ++.+- ++-+++||.|
T Consensus 7 ~i~v~tP~G~~--~~lp~GaT~~D~A~~Ih~~lg~~~---------------v~AkVNG-~~v~L-----~~~L~~gd~V 63 (78)
T 3hvz_A 7 EVFVFTPKGDV--ISLPIGSTVIDFAYAIHSAVGNRM---------------IGAKVDG-RIVPI-----DYKVKTGEII 63 (78)
T ss_dssp EEEEECTTSCE--EEEETTCBHHHHHHHHCHHHHHTE---------------EEEEETT-EEECT-----TCBCCTTCBE
T ss_pred eEEEECCCCCE--EEecCCCCHHHHHHHhhhhhhcce---------------EEEEECC-EEcCC-----CcccCCCCEE
Confidence 57787778887 456999999999888866542111 1112355 33332 3568999988
Q ss_pred EEEE
Q 040719 125 QFSR 128 (205)
Q Consensus 125 ~Fk~ 128 (205)
.++.
T Consensus 64 eIit 67 (78)
T 3hvz_A 64 DVLT 67 (78)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7764
No 164
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=49.24 E-value=51 Score=31.61 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=36.3
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLS 80 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~ 80 (205)
+..|.+.|...||+...|.|...+|+.||=..|.......
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~ 300 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLK 300 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCS
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCc
Confidence 4689999999999999999999999999999999997543
No 165
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=46.59 E-value=23 Score=28.07 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=24.7
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHH
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQ 71 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKk 71 (205)
...|.|++ +.+|+.+.|+|+++.||.|.=.
T Consensus 7 ~~~m~i~~-~ing~~~~~~v~~~~tlL~~Lr 36 (168)
T 1t3q_A 7 SQLMRISA-TINGKPRVFYVEPRMHLADALR 36 (168)
T ss_dssp CCCEEEEE-EETTEEEEEEECTTSBHHHHHH
T ss_pred CCcceEEE-EECCEEEEEecCCCCcHHHHHH
Confidence 35688877 7899999999999999988544
No 166
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=45.97 E-value=1.1e+02 Score=28.56 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=35.0
Q ss_pred CCCccccC-C-------CCeEEEEEecCCc--EEEEEeCCCCcHHHHHHHHHHHhccC
Q 040719 33 TMPYLKLP-Q-------PRIRLSVLKLDGS--RFDVYIERNATVGELRQAIEEVFTLS 80 (205)
Q Consensus 33 ~~s~~al~-~-------~aMkLtVrkldGs--~f~V~V~~sATV~DLKkAI~~~f~~~ 80 (205)
.+-|.-|+ . ..|+|+......+ .+.|.|+.++||.||-.++++++...
T Consensus 321 ~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~ 378 (530)
T 2ylm_A 321 KLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELG 378 (530)
T ss_dssp EEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCC
T ss_pred eEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCC
Confidence 45566555 1 4799988744333 36777899999999999999887554
No 167
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=45.86 E-value=45 Score=30.67 Aligned_cols=67 Identities=6% Similarity=0.082 Sum_probs=41.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHH-----hcc--CCC-------CCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 56 FDVYIERNATVGELRQAIEEV-----FTL--SPT-------EGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 56 f~V~V~~sATV~DLKkAI~~~-----f~~--~pe-------~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
+.|.|+.+.|+.+.=++.++. |.. .+. .|. .=..==++||..+.+.+.. ..=..+|.++||
T Consensus 315 ~~Vtv~~gssll~vLk~a~e~n~~F~F~~~e~~~G~fItSInG~---~~~~~~~~YW~l~~~g~~~--~~G~~~y~~~~g 389 (399)
T 2pmv_A 315 INVSVKSGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVSSINNI---AENVNHKTYWQFLSGVTPL--NEGVADYIPFNH 389 (399)
T ss_dssp EEEESSSCSCHHHHHHHHHHSCCSCCEEEEEETTEEEEEEESSC---BCCGGGTEEEEEEETTEEC--SSCTTTCCCCTT
T ss_pred eEEEecCCCCHHHHHHHHHHhCcCCceEEeecCCCceEEeECCC---ccCcCCCeeEEEEECCeec--ccchhheecCCC
Confidence 689999999999988887776 211 000 000 0000013566666553433 345788999999
Q ss_pred CEEEEE
Q 040719 122 DELQFS 127 (205)
Q Consensus 122 d~L~Fk 127 (205)
|.|.|.
T Consensus 390 d~I~f~ 395 (399)
T 2pmv_A 390 EHITAN 395 (399)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999985
No 168
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=44.94 E-value=88 Score=24.97 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=27.1
Q ss_pred CeEEEEEecCCc-E---EEEEeCCCCcHHHHHHHHHHHhcc
Q 040719 43 RIRLSVLKLDGS-R---FDVYIERNATVGELRQAIEEVFTL 79 (205)
Q Consensus 43 aMkLtVrkldGs-~---f~V~V~~sATV~DLKkAI~~~f~~ 79 (205)
..+|.| .+.|. . -.|.|+.++|..+|=.+|+.+|.-
T Consensus 8 iy~lrV-~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afgw 47 (188)
T 2i1s_A 8 VYHLKL-SIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDW 47 (188)
T ss_dssp EEEEEE-EETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTC
T ss_pred EEEEEE-EECCCCCCeEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 455666 33432 1 389999999999999999999953
No 169
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=44.59 E-value=97 Score=23.19 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=53.3
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccc--cccceEEeeCCeeecCCcch----hcc
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTN--VWGHFCLCYDGRKLVNDKTH----IRD 115 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~--VWk~fcLi~~G~KLldD~kt----Lsd 115 (205)
+.+-|.|-..||++..|.|+...|+.|+=+.+..+....... +|.- .|..+ .....+.|... |..
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~-----~WaLvE~~P~L----~~ER~~EDHE~vvevl~~ 78 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDE-----TWGLVECHPHL----ALERGLEDHESVVEVQAA 78 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCC-----CCCEEEEETTT----TEEEEECSSSCHHHHHTT
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCC-----CeEEEEecCCC----CcEEeccCchhHHHHHhh
Confidence 467888889999999999999999999999999887443332 2421 01110 12233444433 455
Q ss_pred cCCCCCCEEEEEEec
Q 040719 116 FRMKDGDELQFSRHM 130 (205)
Q Consensus 116 yGIkDGd~L~Fk~rl 130 (205)
.++.....++|.+|.
T Consensus 79 W~~~s~nr~~F~kr~ 93 (100)
T 1wgr_A 79 WPVGGDSRFVFRKNF 93 (100)
T ss_dssp SCSSSCCEEEECSCC
T ss_pred CccCCCcEEEEecch
Confidence 667777778887764
No 170
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=44.41 E-value=43 Score=30.74 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=36.1
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccC
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLS 80 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~ 80 (205)
+..|.+.|...||+...|.|..++|+.||=..|.......
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~ 253 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAME 253 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCT
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCC
Confidence 3579999999999999999999999999999999998554
No 171
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=43.58 E-value=18 Score=27.07 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=45.3
Q ss_pred eEEEEEecCCcE--E--EEEe-CCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCC
Q 040719 44 IRLSVLKLDGSR--F--DVYI-ERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRM 118 (205)
Q Consensus 44 MkLtVrkldGs~--f--~V~V-~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGI 118 (205)
|+|+- +..|.. | +|.+ +..+||.|+=.+|...+.. +. --..||+. ..-++|+++-. +|-+
T Consensus 12 IrVYt-k~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~------~f-kyA~VwG~-saK~~~qrVgl------dh~L 76 (93)
T 2eki_A 12 VRIYT-KPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIK------EF-KYALVWGL-SVKHNPQKVGK------DHTL 76 (93)
T ss_dssp EEEEE-CCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTT------TE-EEEEEBST-TSSSSSEEECS------SCCC
T ss_pred EEEEe-CCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHh------hc-cEEEEecc-cccCCCEECCC------CcEe
Confidence 56665 445543 2 6888 9999999999999887621 11 11125553 22346777632 4568
Q ss_pred CCCCEEEEEEe
Q 040719 119 KDGDELQFSRH 129 (205)
Q Consensus 119 kDGd~L~Fk~r 129 (205)
+|||.|.++.+
T Consensus 77 ~d~DVV~Iv~~ 87 (93)
T 2eki_A 77 EDEDVIQIVKK 87 (93)
T ss_dssp CSSEEECEEEC
T ss_pred cCCCEEEEEeC
Confidence 89999988876
No 172
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=43.41 E-value=24 Score=33.00 Aligned_cols=68 Identities=9% Similarity=0.146 Sum_probs=48.6
Q ss_pred EEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhccc--CCCCCCEEEEEEecc
Q 040719 57 DVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDF--RMKDGDELQFSRHMS 131 (205)
Q Consensus 57 ~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdy--GIkDGd~L~Fk~rl~ 131 (205)
.+.|+.+++|.+|-..|.+.+..+++.... +|.-+.-. .-.+|.+.+.|+.+. +|.+||.|.|-+...
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~------lyEEi~~~-~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~~ 219 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLI------LYEEVKPN-LTERIQDYDVSLDKALDELMDGDIIVFQKDDP 219 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEE------EEEEEETT-EEEECCCSSSBHHHHSTTCCTTEEEEEEECCG
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceE------EEEecCCC-ceeEcccccccHHHHHhcccCCCEEEEEecCC
Confidence 577899999999999999998777764211 22222110 012444367899999 999999999999876
No 173
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=42.98 E-value=80 Score=23.70 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=22.1
Q ss_pred CcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeC
Q 040719 64 ATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYD 102 (205)
Q Consensus 64 ATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~ 102 (205)
.|..+|+..|+..|+..... .=.|.|+.-=+..+.+.+
T Consensus 42 ~s~~~L~~~V~~lFp~l~~~-~f~l~Y~DedGDlItiSs 79 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRPG-GFQAHYRAERGDLVAFSS 79 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCSS-CEEEEEECTTCCEEEECS
T ss_pred ccHHHHHHHHHHHccccCCC-cEEEEEECCCCCEEEecC
Confidence 38999999999998543321 123444443334444433
No 174
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=38.26 E-value=81 Score=23.60 Aligned_cols=78 Identities=12% Similarity=0.200 Sum_probs=53.4
Q ss_pred CeEEEEEecCCcEEE-EEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCC
Q 040719 43 RIRLSVLKLDGSRFD-VYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDG 121 (205)
Q Consensus 43 aMkLtVrkldGs~f~-V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDG 121 (205)
..||++-+.....|. +.||+++-...+=+-..+.|+.+++. .-++..+|..+ +-..+--..-+|-|
T Consensus 12 tFkItltSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~T------------sAiiT~dGiGI-nP~QtAGnvFlKhG 78 (92)
T 1j0g_A 12 SFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAAT------------SAIITNDGIGI-NPAQTAGNVFLKHG 78 (92)
T ss_dssp EEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSS------------EEEECTTSCCC-CCSSBHHHHHHHTC
T ss_pred EEEEEEccCCCCCceEEecCccCchHHHHHHHHHHcCCCccc------------eEEEecCCccc-ChhhccchhhhhcC
Confidence 356776555555564 45899988887777777888776653 12455677666 44556666668899
Q ss_pred CEEEEEEecccc
Q 040719 122 DELQFSRHMSLD 133 (205)
Q Consensus 122 d~L~Fk~rl~~~ 133 (205)
++|.+++|=...
T Consensus 79 seLrlIPRDRVG 90 (92)
T 1j0g_A 79 SELRIIPRDRVG 90 (92)
T ss_dssp SEEEEEECCSSC
T ss_pred ceeEeccccccc
Confidence 999999885543
No 175
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=35.98 E-value=47 Score=24.88 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=22.6
Q ss_pred CCCeEEEEEecCCcE--EEEEeCCCCcHHHHHHHHHHHhc
Q 040719 41 QPRIRLSVLKLDGSR--FDVYIERNATVGELRQAIEEVFT 78 (205)
Q Consensus 41 ~~aMkLtVrkldGs~--f~V~V~~sATV~DLKkAI~~~f~ 78 (205)
|.+|++++.+.++.. +.|+|+ -+++++++.+.+.
T Consensus 1 ~~~M~v~~e~~~~~~~~l~v~v~----~~~~~~~~~~~~~ 36 (121)
T 1p9y_A 1 GSHMQVSVETTQGLGRRVTITIA----ADSIETAVKSELV 36 (121)
T ss_dssp ---CEEEEEECSTTEEEEEEEEC----HHHHHHHHHHHHH
T ss_pred CCcceEEEEECCCcEEEEEEEEC----HHHHHHHHHHHHH
Confidence 357999999999987 455554 4667777776664
No 176
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=35.74 E-value=74 Score=25.35 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=40.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHhccCCC----CCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEeccc
Q 040719 57 DVYIERNATVGELRQAIEEVFTLSPT----EGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMSL 132 (205)
Q Consensus 57 ~V~V~~sATV~DLKkAI~~~f~~~pe----~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~~ 132 (205)
.++|+. +||.||.+.+...+..... .+ -+...+.+.-+| ........ .++-+++||+|.|.+-++.
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~-------~l~~~v~VaVNg-~~v~~~~~-~dt~L~dGDeVai~PpVsG 86 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGE-------GLAERVSVFLEG-RDVRYLQG-LSTPLSPGATLDLFPPVAG 86 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETT-------EECTTCEEEETT-EEGGGTTG-GGCBCCTTCEEEEECSCCS
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhccc-------ccCCcEEEEECC-EECCCcCC-CccCCCCCCEEEEECcccc
Confidence 355665 8999999999877421100 00 011223344455 34332211 2456999999999999987
Q ss_pred cc
Q 040719 133 DY 134 (205)
Q Consensus 133 ~~ 134 (205)
.+
T Consensus 87 G~ 88 (168)
T 1v8c_A 87 GG 88 (168)
T ss_dssp EE
T ss_pred cc
Confidence 74
No 177
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=35.35 E-value=1.4e+02 Score=22.53 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=28.1
Q ss_pred EEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhc
Q 040719 46 LSVLKLDGSRFDVYIERNATVGELRQAIEEVFT 78 (205)
Q Consensus 46 LtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~ 78 (205)
..|-..|.+.+.|.++-++|+.|++.++..++.
T Consensus 12 ~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~ 44 (104)
T 1wgy_A 12 CHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQ 44 (104)
T ss_dssp EEEECSSSCEEEECCCTTCBSHHHHHHHHHHHT
T ss_pred EEEEeccCceEEEEEeccchHHHHHHHHHHHhc
Confidence 445556888899999999999999999999984
No 178
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=35.17 E-value=46 Score=25.14 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=34.9
Q ss_pred cCCCcc-ccCCCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 040719 32 RTMPYL-KLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVF 77 (205)
Q Consensus 32 ~~~s~~-al~~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f 77 (205)
+-++|. .|+|..=-+.|-..+|-.|.|+||.+--+..-|++|++-.
T Consensus 24 ~i~syteslagkremviisf~ngatfqvevpgsqh~~sqk~~~ermk 70 (104)
T 3chb_D 24 KIFSYTESLAGKREMAIITFKNGATFQVEVPGSQHIDSQKKAIERMK 70 (104)
T ss_dssp CCSEEEEECSTTCCEEEEECTTCCEEEECCCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCceeEEEEEecCCcEEEEecCcchhhhhhhhHHHHHH
Confidence 345554 4566543455558899999999999999999999999864
No 179
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=35.09 E-value=30 Score=29.51 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=25.8
Q ss_pred CCeEEEEEecCCcEEEEEeCC--CCcHHHHH
Q 040719 42 PRIRLSVLKLDGSRFDVYIER--NATVGELR 70 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~--sATV~DLK 70 (205)
+-++|.|..+||+...|+|.. ++|+.||-
T Consensus 4 ~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~ 34 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYRSVELKHGNNTTVQQIM 34 (322)
T ss_dssp -CCEEEEECTTSCEEEEECTTGGGCCHHHHH
T ss_pred CceEEEEEEECCcEEEEEEcCCCCCcHHHHH
Confidence 357899999999999999998 99999993
No 180
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=33.79 E-value=11 Score=26.08 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=31.6
Q ss_pred EEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCCCCCEEEEEEecc
Q 040719 58 VYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMKDGDELQFSRHMS 131 (205)
Q Consensus 58 V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIkDGd~L~Fk~rl~ 131 (205)
++++..+||.||.+.+. .++.. ..+.-+|+-+ +. +.-+++||+|-|.+-++
T Consensus 25 ~~~~~~~Tv~dLl~~L~----~~~~~-------------v~VavNg~~v-~~-----~~~L~dGD~V~i~ppv~ 75 (77)
T 1rws_A 25 IEWREGMKVRDILRAVG----FNTES-------------AIAKVNGKVV-LE-----DDEVKDGDFVEVIPVVS 75 (77)
T ss_dssp CCCCSSCCHHHHHHTTT----CSSCS-------------SCEEETTEEE-CS-----SSCCCSSCCCBCSCCCC
T ss_pred EECCCCCcHHHHHHHhC----CCCcC-------------EEEEECCEEC-CC-----CCCcCCCCEEEEEcccc
Confidence 45677899999987764 12221 2244556333 32 25699999988766544
No 181
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=32.62 E-value=1.5e+02 Score=21.81 Aligned_cols=78 Identities=12% Similarity=0.047 Sum_probs=43.5
Q ss_pred CeEEEEEecCCc---EEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcccCCC
Q 040719 43 RIRLSVLKLDGS---RFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRDFRMK 119 (205)
Q Consensus 43 aMkLtVrkldGs---~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsdyGIk 119 (205)
.|.|.|.-..-. .+.++++..+||.|+=++..-.- ..|+-. +++.-..+|+. .+ + .++-++
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~-~~peId--------l~~~~V~Vng~-~v-~-----~d~~L~ 75 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILS-QFPEID--------LSTNKIGIFSR-PI-K-----LTDVLK 75 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHH-HCTTCC--------TTTSEEEEEEC-SC-C-----TTCBCC
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCc-cCCccc--------ccccEEEEcCE-EC-C-----CCccCC
Confidence 466766544333 36788999999999876664421 122211 11222344433 22 2 455699
Q ss_pred CCCEEEEEEeccccccc
Q 040719 120 DGDELQFSRHMSLDYLH 136 (205)
Q Consensus 120 DGd~L~Fk~rl~~~~~~ 136 (205)
+||.|-+.+-+..+---
T Consensus 76 dGDRVEIyrpl~~DPk~ 92 (97)
T 2hj1_A 76 EGDRIEIYRPLLADPKE 92 (97)
T ss_dssp TTCEEEECCCCC-----
T ss_pred CCCEEEEEecccCCHHH
Confidence 99999998887776543
No 182
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=32.05 E-value=1.6e+02 Score=22.85 Aligned_cols=73 Identities=21% Similarity=0.373 Sum_probs=47.7
Q ss_pred CCeEEEEEecCCcE-E------EEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhc
Q 040719 42 PRIRLSVLKLDGSR-F------DVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIR 114 (205)
Q Consensus 42 ~aMkLtVrkldGs~-f------~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLs 114 (205)
..+-|.|.+..++. . ..-|+.+.||+++-..|.+.....++. .+.|.|-++.+-.-+.++.
T Consensus 34 ~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~------------alFl~~vn~~~p~~~~~m~ 101 (130)
T 2zjd_A 34 TKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQ------------AFFLLVNGHSMVSVSTPIS 101 (130)
T ss_dssp TEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTC------------CEEEEETTTEECCTTSBHH
T ss_pred CceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCc------------eEEEEEECCccCCccchHH
Confidence 35667776665544 2 345799999999999999998777764 2455455545666666666
Q ss_pred c----cCCCCCCEEEEE
Q 040719 115 D----FRMKDGDELQFS 127 (205)
Q Consensus 115 d----yGIkDGd~L~Fk 127 (205)
+ |+-.|| .|++.
T Consensus 102 ~lY~~~kdeDG-fLyv~ 117 (130)
T 2zjd_A 102 EVYESEKDEDG-FLYMV 117 (130)
T ss_dssp HHHHHHCCTTS-CEEEE
T ss_pred HHHHHhCCCCC-EEEEE
Confidence 5 344444 46554
No 183
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=30.92 E-value=99 Score=23.00 Aligned_cols=61 Identities=16% Similarity=0.286 Sum_probs=39.5
Q ss_pred CCeEEEEEecCCcEE------EEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCCeeecCCcchhcc
Q 040719 42 PRIRLSVLKLDGSRF------DVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDGRKLVNDKTHIRD 115 (205)
Q Consensus 42 ~aMkLtVrkldGs~f------~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G~KLldD~ktLsd 115 (205)
..+-|.|.+..++.+ ...|+.+.||+++...|.+.+...++.. +.|.-++ .+..-+.++.+
T Consensus 26 ~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~a------------lfl~vn~-~~p~~~~~m~~ 92 (110)
T 2r2q_A 26 DRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDA------------LFFFVNN-TIPPTSATMGQ 92 (110)
T ss_dssp TEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSC------------CEEEBTT-BCCCTTSBHHH
T ss_pred CceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCc------------EEEEECC-EecCccChHHH
Confidence 346666766655433 2367889999999999999987666542 3343344 35555666654
No 184
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=29.25 E-value=1.6e+02 Score=23.00 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=55.3
Q ss_pred CCCeEEEEEecCC-----cEEEEEeCCCCcHHHHHHHHHHH-hccCCCCCCCcccccccccceEEeeCCeeec-CCcchh
Q 040719 41 QPRIRLSVLKLDG-----SRFDVYIERNATVGELRQAIEEV-FTLSPTEGQGKISWTNVWGHFCLCYDGRKLV-NDKTHI 113 (205)
Q Consensus 41 ~~aMkLtVrkldG-----s~f~V~V~~sATV~DLKkAI~~~-f~~~pe~g~qkISW~~VWk~fcLi~~G~KLl-dD~ktL 113 (205)
++++-|+| .=++ +.+.+-|++..|.++|=..+-.. +..-|+- .+|.|.-|= |+ -+|+... +.+++|
T Consensus 21 ~g~qLlYi-gWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDf--a~idws~v~---W~-l~g~pftPD~~kSL 93 (119)
T 3u52_E 21 HGMQLLYV-YWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDS--AKADFLNAE---WL-LNDEPFTPKADASL 93 (119)
T ss_dssp TTCEEEEE-ECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTG--GGCCTTSSE---EE-ETTEEECCCTTSBT
T ss_pred CCCEEEEE-EecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCcc--ccCCcchhe---EE-ECCccCCCChhhhH
Confidence 56777787 3333 33678889999999997655544 4444543 567774431 33 3466775 457999
Q ss_pred cccCCCCCCEEEEE
Q 040719 114 RDFRMKDGDELQFS 127 (205)
Q Consensus 114 sdyGIkDGd~L~Fk 127 (205)
.+.||.=.+.|.|.
T Consensus 94 aenG~~HKs~lrf~ 107 (119)
T 3u52_E 94 KEQGIDHKSMLTVT 107 (119)
T ss_dssp TTTTCCTTEEEEEE
T ss_pred HHcCCCchheEEEe
Confidence 99999999999986
No 185
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=28.59 E-value=60 Score=24.99 Aligned_cols=27 Identities=11% Similarity=0.289 Sum_probs=23.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHhccCCCC
Q 040719 57 DVYIERNATVGELRQAIEEVFTLSPTE 83 (205)
Q Consensus 57 ~V~V~~sATV~DLKkAI~~~f~~~pe~ 83 (205)
.+-|..++|+.+|+..|++.+..+++.
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~ 85 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQ 85 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGG
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCccc
Confidence 457789999999999999999876654
No 186
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=26.51 E-value=1.4e+02 Score=24.03 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=32.7
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhccC
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTLS 80 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~~ 80 (205)
.+.|.|-..||....|.|+.+.|+.||-+.+..+++..
T Consensus 34 k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~ 71 (291)
T 3tca_A 34 KLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCD 71 (291)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCC
T ss_pred ceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCC
Confidence 46788888999999999999999999999988887543
No 187
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=25.77 E-value=34 Score=27.32 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=25.5
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCC---cHHHHHHHH
Q 040719 41 QPRIRLSVLKLDGSRFDVYIERNA---TVGELRQAI 73 (205)
Q Consensus 41 ~~aMkLtVrkldGs~f~V~V~~sA---TV~DLKkAI 73 (205)
+..|+|.| +.+|..|.+++.+++ |+.+|.+++
T Consensus 27 ~~~~~I~i-~~~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 27 GVEMRLRI-RFESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp SSCCCEEE-EETTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred cCCeEEEE-EECCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 44788888 457788999999999 999887754
No 188
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=24.11 E-value=31 Score=26.00 Aligned_cols=37 Identities=19% Similarity=0.472 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHH---HHHHHHHHhccCCCCCCCccccccccc
Q 040719 55 RFDVYIERNATVGE---LRQAIEEVFTLSPTEGQGKISWTNVWG 95 (205)
Q Consensus 55 ~f~V~V~~sATV~D---LKkAI~~~f~~~pe~g~qkISW~~VWk 95 (205)
.++|.+|.+.+-.+ +|..=.+........| -|+|+|+
T Consensus 6 ~m~V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G----~~~~lWR 45 (96)
T 1mli_A 6 KMTVKLPVDMDPAKATQLKADEKELAQRLQREG----TWRHLWR 45 (96)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHHHHHhCC----eeEEEEE
Confidence 35677787755544 4443333333333444 3888887
No 189
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=23.28 E-value=2.4e+02 Score=21.83 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=30.3
Q ss_pred CeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHhcc
Q 040719 43 RIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVFTL 79 (205)
Q Consensus 43 aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f~~ 79 (205)
-+-..|-..|-+.+.|.++-++||.|++.++..++..
T Consensus 9 ei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~ 45 (120)
T 2dhz_A 9 EIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQY 45 (120)
T ss_dssp CEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTT
T ss_pred cEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhcc
Confidence 3445566678888899999999999999999999853
No 190
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=22.96 E-value=1.2 Score=32.38 Aligned_cols=29 Identities=14% Similarity=0.454 Sum_probs=23.5
Q ss_pred CCcchhcccCCCCCCEEEEEEeccccccc
Q 040719 108 NDKTHIRDFRMKDGDELQFSRHMSLDYLH 136 (205)
Q Consensus 108 dD~ktLsdyGIkDGd~L~Fk~rl~~~~~~ 136 (205)
-+..+|++.||+.||.|-+.+++...|.-
T Consensus 39 l~~~~Lr~LGi~eGDIIrVmk~l~~k~~r 67 (72)
T 3idw_A 39 INNSMLRTLGLREGDIVRVMKHLDKKFGR 67 (72)
T ss_dssp CCHHHHHHTTCCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHcCCchhhHHHHHHHHHHHhCc
Confidence 35689999999999998888887766653
No 191
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=22.60 E-value=1e+02 Score=22.71 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=24.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhccCC
Q 040719 53 GSRFDVYIERNATVGELRQAIEEVFTLSP 81 (205)
Q Consensus 53 Gs~f~V~V~~sATV~DLKkAI~~~f~~~p 81 (205)
...+.+.|+..||=-|.|+||+..|....
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV 55 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEV 55 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCce
Confidence 35678889999999999999999996543
No 192
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=22.45 E-value=59 Score=24.89 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=33.6
Q ss_pred CCCcc-ccCCCCeEEEEEecCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 040719 33 TMPYL-KLPQPRIRLSVLKLDGSRFDVYIERNATVGELRQAIEEVF 77 (205)
Q Consensus 33 ~~s~~-al~~~aMkLtVrkldGs~f~V~V~~sATV~DLKkAI~~~f 77 (205)
-++|. .|+|..--+.|-..+|-.|.|+||.+--+..-|++|++-.
T Consensus 24 i~syteslagkremviisf~ngatfqvevpgsqh~~sqk~~~ermk 69 (113)
T 1ltr_D 24 ILSYTESMAGKREMVIITFKSGATFQVEVPGSQHIDSQKKAIERMK 69 (113)
T ss_dssp CSEEEEECSTTCCCEEEECTTSCEEEECCCSTTSCSHHHHHHHHHH
T ss_pred HHHHHHhhcCceeEEEEEecCCcEEEEecCcchhhhhhhhHHHHHH
Confidence 34553 4556533344558899999999999999999999998864
No 193
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=22.43 E-value=89 Score=25.02 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=21.3
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHH
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELR 70 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLK 70 (205)
|+|++ +.||+.+.|+|+++.|+.++=
T Consensus 4 ~~i~~-~vNG~~~~~~v~~~~tLLd~L 29 (166)
T 1n62_A 4 AHIEL-TINGHPVEALVEPRTLLIHFI 29 (166)
T ss_dssp EEEEE-EETTEEEEEEECTTCBHHHHH
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHH
Confidence 56666 679999999999999999843
No 194
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=22.18 E-value=85 Score=22.81 Aligned_cols=28 Identities=21% Similarity=0.516 Sum_probs=24.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhccC
Q 040719 53 GSRFDVYIERNATVGELRQAIEEVFTLS 80 (205)
Q Consensus 53 Gs~f~V~V~~sATV~DLKkAI~~~f~~~ 80 (205)
...+.+.|+..||=-|.|+||++.|.-.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~Vk 49 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVT 49 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 4567888999999999999999999643
No 195
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=21.91 E-value=85 Score=23.23 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=22.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhccC
Q 040719 56 FDVYIERNATVGELRQAIEEVFTLS 80 (205)
Q Consensus 56 f~V~V~~sATV~DLKkAI~~~f~~~ 80 (205)
+.+.|+..||=-|.|+||+..|...
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~Vk 49 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVR 49 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCC
Confidence 7888999999999999999999643
No 196
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=21.34 E-value=1.6e+02 Score=20.58 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCcEEEEEeCCCCcHHHH
Q 040719 42 PRIRLSVLKLDGSRFDVYIERNATVGEL 69 (205)
Q Consensus 42 ~aMkLtVrkldGs~f~V~V~~sATV~DL 69 (205)
..++|++...+|....|+++...|+.|.
T Consensus 2 ~~~~v~~~~~~g~~~~~~~~~g~tlL~a 29 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIMIEGNEGDSILDL 29 (103)
T ss_dssp CCEEEEEECTTCCEEEEEECTTCBHHHH
T ss_pred CceEEEEEeCCCCEEEEEECCCCHHHHH
Confidence 4578888658897778888999999774
No 197
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=20.71 E-value=1.1e+02 Score=24.49 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=20.9
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHH
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGELR 70 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DLK 70 (205)
|.|++ +.||+.+.++|+++.|+.|+=
T Consensus 4 ~~i~~-~vNG~~~~~~v~~~~tLLd~L 29 (163)
T 1ffv_A 4 KIITV-NVNGKAQEKAVEPRTLLIHFL 29 (163)
T ss_dssp EEEEE-EETTEEEEEEECTTCBHHHHH
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHH
Confidence 45555 669999999999999999843
No 198
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.64 E-value=1.3e+02 Score=21.95 Aligned_cols=28 Identities=25% Similarity=0.621 Sum_probs=24.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhccC
Q 040719 53 GSRFDVYIERNATVGELRQAIEEVFTLS 80 (205)
Q Consensus 53 Gs~f~V~V~~sATV~DLKkAI~~~f~~~ 80 (205)
...+.+.|+..||=-|.|+||+..|.-.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~Vk 50 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVK 50 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCC
Confidence 4567888999999999999999999643
No 199
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=20.29 E-value=1.1e+02 Score=21.89 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=22.1
Q ss_pred EEEEEecCCcEEEEEeCCCCcHHHH
Q 040719 45 RLSVLKLDGSRFDVYIERNATVGEL 69 (205)
Q Consensus 45 kLtVrkldGs~f~V~V~~sATV~DL 69 (205)
+|++...+|....|+++...|+.|.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a 26 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEA 26 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHH
Confidence 6889899999999999999999773
No 200
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=20.14 E-value=2.9e+02 Score=21.02 Aligned_cols=76 Identities=12% Similarity=0.318 Sum_probs=53.9
Q ss_pred CeEEEEEecCC---cEEEEEeCCCCcHHHHHHHHHHHhccCCCCCCCcccccccccceEEeeCC--eeecCCcchhcccC
Q 040719 43 RIRLSVLKLDG---SRFDVYIERNATVGELRQAIEEVFTLSPTEGQGKISWTNVWGHFCLCYDG--RKLVNDKTHIRDFR 117 (205)
Q Consensus 43 aMkLtVrkldG---s~f~V~V~~sATV~DLKkAI~~~f~~~pe~g~qkISW~~VWk~fcLi~~G--~KLldD~ktLsdyG 117 (205)
.++|+|--.+. ..+.+.|..+.-|+.+--.+-+...... -|..+-|-... +=|+.-.-||..||
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~-----------dWSDhaLWW~~k~~WLlkt~~tLDkyg 87 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQ-----------DWSDYALWWEQKRCWLLKTHWTLDKCG 87 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSS-----------CCSSEEEEETTTTEEECCTTSBHHHHT
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhccccc-----------chHHhhhhhhhhchhhhhhhhhhhhhc
Confidence 46777766554 4578888888999999877776653211 35656555533 34567788999999
Q ss_pred CCCCCEEEEEEe
Q 040719 118 MKDGDELQFSRH 129 (205)
Q Consensus 118 IkDGd~L~Fk~r 129 (205)
|.-...|+|-+.
T Consensus 88 iqADa~L~ftp~ 99 (102)
T 2kmc_A 88 VQADANLLFTPQ 99 (102)
T ss_dssp CCTTSCEEEEEC
T ss_pred eeeeeeeeccCC
Confidence 999999999764
No 201
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=20.10 E-value=1e+02 Score=24.64 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.5
Q ss_pred eEEEEEecCCcEEEEEeCCCCcHHHH
Q 040719 44 IRLSVLKLDGSRFDVYIERNATVGEL 69 (205)
Q Consensus 44 MkLtVrkldGs~f~V~V~~sATV~DL 69 (205)
|.|++ +.||+.+.|+|++..|+.|+
T Consensus 4 ~~i~~-~vNG~~~~v~v~p~~tLLd~ 28 (160)
T 3hrd_D 4 ITINL-NLNGEARSIVTEPNKRLLDL 28 (160)
T ss_dssp EEEEE-EETTEEEEEEECSSSBHHHH
T ss_pred ceEEE-EECCEEEEEecCCCCCHHHH
Confidence 66776 78999999999999999885
Done!