Query 040720
Match_columns 77
No_of_seqs 116 out of 1011
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 17:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 99.8 2.7E-20 9.4E-25 110.0 10.2 76 1-76 13-135 (159)
2 3u30_A Ubiquitin, linear DI-ub 99.8 1.8E-20 6.3E-25 112.2 9.3 75 2-76 32-150 (172)
3 3b08_A Polyubiquitin-C, ubiqui 99.8 1.1E-18 3.8E-23 101.8 10.3 75 1-75 11-129 (152)
4 3plu_A Ubiquitin-like modifier 99.4 2.2E-13 7.5E-18 74.5 5.7 48 1-48 32-80 (93)
5 1wju_A NEDD8 ultimate buster-1 99.4 3.3E-13 1.1E-17 74.8 6.4 57 2-66 31-88 (100)
6 1uh6_A Ubiquitin-like 5; beta- 99.4 4.3E-13 1.5E-17 74.4 4.7 48 1-48 39-87 (100)
7 2lxa_A Ubiquitin-like protein 99.4 5.2E-13 1.8E-17 72.4 4.4 47 2-48 13-63 (87)
8 2fnj_B Transcription elongatio 99.4 5.9E-13 2E-17 75.7 4.7 47 2-48 13-60 (118)
9 4ajy_B Transcription elongatio 99.3 6.3E-13 2.2E-17 75.5 3.0 48 2-49 13-61 (118)
10 3plu_A Ubiquitin-like modifier 99.3 3.9E-12 1.3E-16 69.6 5.4 41 36-76 35-75 (93)
11 2kk8_A Uncharacterized protein 99.3 3.2E-12 1.1E-16 68.6 5.0 48 1-48 21-70 (84)
12 1wju_A NEDD8 ultimate buster-1 99.3 5.8E-12 2E-16 69.8 5.6 42 35-76 32-73 (100)
13 2kjr_A CG11242; UBL, ubiquitin 99.3 1.6E-11 5.4E-16 67.4 6.6 47 2-48 29-82 (95)
14 3phx_B Ubiquitin-like protein 99.3 3.5E-12 1.2E-16 67.3 3.8 48 1-48 15-63 (79)
15 2dzm_A FAS-associated factor 1 99.2 1.4E-11 4.8E-16 68.2 5.5 48 1-48 19-68 (100)
16 4dbg_A Ranbp-type and C3HC4-ty 99.2 5.2E-12 1.8E-16 70.5 3.5 47 2-48 38-85 (105)
17 2uyz_B Small ubiquitin-related 99.2 1.3E-11 4.5E-16 65.0 4.7 48 1-48 14-62 (79)
18 2kj6_A Tubulin folding cofacto 99.2 2E-11 6.9E-16 67.3 5.3 47 2-48 28-82 (97)
19 2lxa_A Ubiquitin-like protein 99.2 2.1E-11 7.1E-16 66.0 5.2 40 37-76 18-58 (87)
20 4ajy_B Transcription elongatio 99.2 2.5E-11 8.5E-16 68.9 5.6 45 31-75 10-54 (118)
21 2hj8_A Interferon-induced 17 k 99.2 1.4E-11 5E-16 66.3 4.3 48 1-48 15-63 (88)
22 4fbj_B NEDD8; effector-HOST ta 99.2 2.2E-11 7.7E-16 65.6 5.1 48 1-48 11-59 (88)
23 2kan_A Uncharacterized protein 99.2 5.7E-11 2E-15 64.9 6.5 47 2-48 26-74 (94)
24 2fnj_B Transcription elongatio 99.2 3.4E-11 1.2E-15 68.4 5.7 44 33-76 12-55 (118)
25 1uh6_A Ubiquitin-like 5; beta- 99.2 3.1E-11 1.1E-15 66.8 5.3 41 36-76 42-82 (100)
26 4eew_A Large proline-rich prot 99.2 1.8E-11 6.1E-16 65.8 4.1 47 2-48 29-76 (88)
27 2l7r_A Ubiquitin-like protein 99.2 8.2E-11 2.8E-15 64.1 6.7 48 1-48 28-76 (93)
28 1wyw_B Ubiquitin-like protein 99.2 7.5E-11 2.6E-15 64.6 6.5 47 2-48 33-80 (97)
29 4dwf_A HLA-B-associated transc 99.2 1.9E-11 6.6E-16 65.9 4.1 48 1-48 16-64 (90)
30 1wgh_A Ubiquitin-like 3, HCG-1 99.2 3.3E-11 1.1E-15 68.3 5.1 48 1-48 27-83 (116)
31 3dbh_I NEDD8; cell cycle, acti 99.2 5.1E-11 1.7E-15 63.7 5.2 47 2-48 24-71 (88)
32 3v6c_B Ubiquitin; structural g 99.2 7.2E-11 2.5E-15 63.8 5.7 47 2-48 29-76 (91)
33 2gow_A HCG-1 protein, ubiquiti 99.2 3.5E-11 1.2E-15 69.0 4.6 48 1-48 28-84 (125)
34 3phx_B Ubiquitin-like protein 99.2 8.6E-11 3E-15 61.8 5.8 42 35-76 17-58 (79)
35 2kd0_A LRR repeats and ubiquit 99.2 4.9E-11 1.7E-15 64.0 4.7 47 2-48 23-70 (85)
36 1ndd_A NEDD8, protein (ubiquit 99.2 8.5E-11 2.9E-15 61.0 5.5 47 2-48 12-59 (76)
37 2bwf_A Ubiquitin-like protein 99.2 6.2E-11 2.1E-15 61.9 5.0 47 2-48 15-62 (77)
38 1sif_A Ubiquitin; hydrophobic 99.2 7E-11 2.4E-15 63.7 5.3 48 1-48 20-68 (88)
39 3n3k_B Ubiquitin; hydrolase, p 99.2 7.9E-11 2.7E-15 62.5 5.5 47 2-48 15-62 (85)
40 1wh3_A 59 kDa 2'-5'-oligoadeny 99.1 4.9E-11 1.7E-15 63.8 4.5 47 2-48 19-66 (87)
41 3m62_B UV excision repair prot 99.1 5.7E-11 2E-15 66.1 4.7 48 1-48 12-60 (106)
42 1v5t_A 8430435I17RIK protein; 99.1 2E-10 6.9E-15 62.1 6.7 47 2-48 18-69 (90)
43 2wyq_A HHR23A, UV excision rep 99.1 1.1E-10 3.8E-15 62.0 5.5 47 2-48 17-67 (85)
44 1wy8_A NP95-like ring finger p 99.1 2.3E-10 7.8E-15 61.4 6.8 47 2-48 20-68 (89)
45 4a20_A Ubiquitin-like protein 99.1 3E-11 1E-15 66.6 3.3 43 6-48 37-81 (98)
46 3mtn_B UBA80, ubcep1, ubiquiti 99.1 2.5E-10 8.5E-15 60.5 6.7 48 1-48 14-62 (85)
47 2kk8_A Uncharacterized protein 99.1 1.5E-10 5.1E-15 62.0 5.8 40 36-75 24-64 (84)
48 1wgd_A Homocysteine-responsive 99.1 6.7E-11 2.3E-15 64.2 4.5 47 2-48 21-70 (93)
49 4a20_A Ubiquitin-like protein 99.1 2.1E-10 7.3E-15 63.2 6.4 41 36-76 35-76 (98)
50 2faz_A Ubiquitin-like containi 99.1 1E-10 3.5E-15 61.3 4.9 46 3-48 16-63 (78)
51 2dzi_A Ubiquitin-like protein 99.1 1.2E-10 4.2E-15 61.3 5.2 47 2-48 19-66 (81)
52 1v5o_A 1700011N24RIK protein; 99.1 1E-10 3.6E-15 64.6 5.1 47 2-48 23-71 (102)
53 4b6w_A Tubulin-specific chaper 99.1 7.5E-11 2.6E-15 63.6 4.3 47 2-48 16-70 (86)
54 4hcn_B Polyubiquitin, ubiquiti 99.1 1.3E-10 4.4E-15 63.7 5.1 47 2-48 34-81 (98)
55 4eew_A Large proline-rich prot 99.1 1.9E-10 6.4E-15 61.7 5.7 41 36-76 31-71 (88)
56 3a9j_A Ubiquitin; protein comp 99.1 1.9E-10 6.4E-15 59.7 5.4 47 2-48 12-59 (76)
57 4fbj_B NEDD8; effector-HOST ta 99.1 1.7E-10 6E-15 62.1 5.4 42 35-76 13-54 (88)
58 1uel_A HHR23B, UV excision rep 99.1 1.5E-10 5.2E-15 63.1 5.1 48 1-48 11-62 (95)
59 2kan_A Uncharacterized protein 99.1 2.6E-10 8.9E-15 62.3 6.0 41 35-75 27-67 (94)
60 2klc_A Ubiquilin-1; ubiquitin- 99.1 2.3E-10 7.9E-15 63.2 5.8 47 2-48 36-83 (101)
61 1wx8_A Riken cDNA 4931431F19; 99.1 1.2E-10 4.1E-15 63.5 4.5 48 1-48 27-75 (96)
62 3k9o_B Ubiquitin, UBB+1; E2-25 99.1 2E-10 6.9E-15 62.4 5.4 48 1-48 12-60 (96)
63 4dwf_A HLA-B-associated transc 99.1 2.5E-10 8.5E-15 61.4 5.7 41 36-76 19-59 (90)
64 2kdb_A Homocysteine-responsive 99.1 1.1E-10 3.7E-15 64.5 4.2 46 3-48 38-86 (99)
65 1yqb_A Ubiquilin 3; structural 99.1 5.5E-10 1.9E-14 61.6 6.7 46 3-48 34-80 (100)
66 1we7_A SF3A1 protein; structur 99.1 1.4E-10 4.7E-15 65.4 4.3 47 2-48 47-94 (115)
67 1wh3_A 59 kDa 2'-5'-oligoadeny 99.1 8.9E-10 3.1E-14 58.8 7.3 40 36-75 21-60 (87)
68 3m63_B Ubiquitin domain-contai 99.1 5.1E-11 1.7E-15 65.9 2.3 46 3-48 40-86 (101)
69 1v86_A DNA segment, CHR 7, way 99.1 1.6E-10 5.5E-15 63.2 4.2 47 2-48 28-74 (95)
70 2kdi_A Ubiquitin, vacuolar pro 99.1 2.4E-10 8.3E-15 64.4 5.0 48 1-48 20-68 (114)
71 1se9_A Ubiquitin family; ubiqu 99.1 6.7E-11 2.3E-15 67.9 2.7 46 4-49 31-84 (126)
72 1yx5_B Ubiquitin; proteasome, 99.1 3.4E-10 1.2E-14 61.9 5.4 47 2-48 12-59 (98)
73 2uyz_B Small ubiquitin-related 99.1 3.5E-10 1.2E-14 59.5 5.1 42 35-76 16-57 (79)
74 1wgh_A Ubiquitin-like 3, HCG-1 99.1 9.1E-10 3.1E-14 62.4 7.1 41 36-76 30-78 (116)
75 1wgd_A Homocysteine-responsive 99.0 4.7E-10 1.6E-14 60.8 5.7 42 35-76 22-65 (93)
76 3m62_B UV excision repair prot 99.0 3.2E-10 1.1E-14 63.1 5.1 42 35-76 14-55 (106)
77 2kd0_A LRR repeats and ubiquit 99.0 5.2E-10 1.8E-14 60.0 5.7 41 35-75 24-64 (85)
78 3v6c_B Ubiquitin; structural g 99.0 5.2E-10 1.8E-14 60.4 5.6 41 36-76 31-71 (91)
79 4dbg_A Ranbp-type and C3HC4-ty 99.0 4.8E-10 1.6E-14 62.5 5.5 40 36-75 40-79 (105)
80 1ttn_A DC-UBP, dendritic cell- 99.0 3.4E-10 1.2E-14 62.9 4.9 47 2-48 35-82 (106)
81 3dbh_I NEDD8; cell cycle, acti 99.0 4.2E-10 1.4E-14 60.1 5.2 41 36-76 26-66 (88)
82 2faz_A Ubiquitin-like containi 99.0 5.6E-10 1.9E-14 58.5 5.5 41 35-75 16-57 (78)
83 3vdz_A Ubiquitin-40S ribosomal 99.0 4.1E-10 1.4E-14 63.1 5.2 47 2-48 47-94 (111)
84 1v6e_A Cytoskeleton-associated 99.0 1.9E-10 6.5E-15 62.8 3.7 47 2-48 20-74 (95)
85 3rt3_B Ubiquitin-like protein 99.0 1.8E-10 6.3E-15 67.6 3.8 48 1-48 92-140 (159)
86 3b1l_X E3 ubiquitin-protein li 98.6 2.6E-11 8.7E-16 63.4 0.0 47 2-48 12-59 (76)
87 2bwf_A Ubiquitin-like protein 99.0 7.9E-10 2.7E-14 57.6 5.8 41 35-75 16-56 (77)
88 2hj8_A Interferon-induced 17 k 99.0 4.6E-10 1.6E-14 60.4 4.9 40 36-75 18-57 (88)
89 4hcn_B Polyubiquitin, ubiquiti 99.0 6.2E-10 2.1E-14 61.0 5.4 41 36-76 36-76 (98)
90 3n3k_B Ubiquitin; hydrolase, p 99.0 6.8E-10 2.3E-14 58.8 5.3 42 35-76 16-57 (85)
91 2xzm_9 RPS31E; ribosome, trans 99.0 3.1E-11 1.1E-15 73.4 0.0 46 1-46 11-57 (189)
92 2l7r_A Ubiquitin-like protein 99.0 7.8E-10 2.7E-14 60.1 5.4 42 35-76 30-71 (93)
93 1j8c_A Ubiquitin-like protein 99.0 7.5E-10 2.6E-14 63.3 5.5 47 2-48 43-90 (125)
94 1wxv_A BAG-family molecular ch 99.0 2.3E-09 7.9E-14 57.9 7.2 47 2-48 18-71 (92)
95 1sif_A Ubiquitin; hydrophobic 99.0 8.2E-10 2.8E-14 59.4 5.4 41 35-75 22-62 (88)
96 3mtn_B UBA80, ubcep1, ubiquiti 99.0 1E-09 3.4E-14 58.1 5.6 42 35-76 16-57 (85)
97 3l0w_B Monoubiquitinated proli 99.0 2.8E-10 9.7E-15 68.0 3.8 48 1-48 11-59 (169)
98 2kdb_A Homocysteine-responsive 99.0 7.6E-10 2.6E-14 61.1 5.2 41 36-76 39-81 (99)
99 1wgg_A Ubiquitin carboxyl-term 99.0 3.2E-10 1.1E-14 62.1 3.6 46 2-48 18-65 (96)
100 1wyw_B Ubiquitin-like protein 99.0 8.9E-10 3E-14 60.3 5.4 41 36-76 35-75 (97)
101 2dzi_A Ubiquitin-like protein 99.0 1.4E-09 4.8E-14 57.1 5.9 41 35-75 20-60 (81)
102 1v5o_A 1700011N24RIK protein; 99.0 9.2E-10 3.2E-14 60.8 5.4 41 35-75 24-64 (102)
103 3q3f_A Ribonuclease/ubiquitin 99.0 3.2E-10 1.1E-14 69.0 3.7 48 1-48 116-164 (189)
104 1ndd_A NEDD8, protein (ubiquit 99.0 1.3E-09 4.3E-14 56.5 5.6 41 35-75 13-53 (76)
105 1we6_A Splicing factor, putati 99.0 5.5E-10 1.9E-14 62.5 4.3 47 2-48 42-90 (111)
106 1wx7_A Ubiquilin 3; ubiquitin- 99.0 2E-09 6.8E-14 59.7 6.4 46 3-48 29-75 (106)
107 1wgg_A Ubiquitin carboxyl-term 99.0 8.1E-10 2.8E-14 60.5 4.8 40 36-75 21-60 (96)
108 3k9o_B Ubiquitin, UBB+1; E2-25 99.0 1.4E-09 4.8E-14 59.0 5.6 42 35-76 14-55 (96)
109 2wyq_A HHR23A, UV excision rep 99.0 1.9E-09 6.6E-14 57.2 5.9 41 35-75 18-61 (85)
110 2klc_A Ubiquilin-1; ubiquitin- 99.0 1.7E-09 5.9E-14 59.6 5.7 42 35-76 37-78 (101)
111 1wy8_A NP95-like ring finger p 99.0 2.3E-09 7.8E-14 57.4 6.1 41 35-75 21-62 (89)
112 1yqb_A Ubiquilin 3; structural 99.0 1.5E-09 5E-14 59.8 5.4 40 36-75 35-74 (100)
113 3u5e_m 60S ribosomal protein L 99.0 7.3E-11 2.5E-15 67.6 0.0 47 2-48 12-59 (128)
114 1uel_A HHR23B, UV excision rep 98.9 2.2E-09 7.4E-14 58.5 5.8 41 35-75 13-56 (95)
115 3vdz_A Ubiquitin-40S ribosomal 98.9 2E-09 6.9E-14 60.3 5.8 41 36-76 49-89 (111)
116 1t0y_A Tubulin folding cofacto 98.9 1.1E-09 3.8E-14 62.3 4.7 47 2-48 19-73 (122)
117 3a9j_A Ubiquitin; protein comp 98.9 2.3E-09 8E-14 55.4 5.6 41 35-75 13-53 (76)
118 1se9_A Ubiquitin family; ubiqu 98.9 1.7E-09 5.8E-14 62.0 5.4 41 36-76 31-78 (126)
119 2gow_A HCG-1 protein, ubiquiti 98.9 1.3E-09 4.5E-14 62.4 4.9 41 36-76 31-79 (125)
120 2ojr_A Ubiquitin; lanthide-bin 98.9 1.8E-09 6.3E-14 60.3 5.2 47 2-48 47-94 (111)
121 2daf_A FLJ35834 protein; hypot 98.9 8.8E-10 3E-14 62.4 3.9 46 3-48 29-75 (118)
122 1v5t_A 8430435I17RIK protein; 98.9 1.7E-09 5.9E-14 58.4 4.9 41 35-75 19-63 (90)
123 1wx8_A Riken cDNA 4931431F19; 98.9 2E-09 6.7E-14 58.6 5.0 41 36-76 30-70 (96)
124 2kdi_A Ubiquitin, vacuolar pro 98.9 2.7E-09 9.1E-14 60.1 5.6 40 36-75 23-62 (114)
125 3u5c_f 40S ribosomal protein S 98.9 1.2E-10 4.2E-15 68.7 0.0 47 2-48 12-59 (152)
126 3m63_B Ubiquitin domain-contai 98.9 8.6E-10 2.9E-14 60.9 3.4 41 36-76 41-81 (101)
127 3u30_A Ubiquitin, linear DI-ub 98.9 7.7E-10 2.6E-14 65.8 3.4 48 1-48 107-155 (172)
128 1we7_A SF3A1 protein; structur 98.9 3E-09 1E-13 59.8 5.5 41 35-75 48-88 (115)
129 1yx5_B Ubiquitin; proteasome, 98.9 3.6E-09 1.2E-13 57.8 5.7 41 35-75 13-53 (98)
130 1ttn_A DC-UBP, dendritic cell- 98.9 3.6E-09 1.2E-13 58.7 5.7 40 36-75 37-76 (106)
131 1j8c_A Ubiquitin-like protein 98.9 4.7E-09 1.6E-13 60.0 6.1 42 35-76 44-85 (125)
132 1wxv_A BAG-family molecular ch 98.9 4.5E-09 1.5E-13 56.8 5.8 39 36-74 20-63 (92)
133 1v2y_A 3300001G02RIK protein; 98.9 1.1E-09 3.8E-14 61.1 3.3 48 1-48 18-82 (105)
134 1wx7_A Ubiquilin 3; ubiquitin- 98.9 4.7E-09 1.6E-13 58.2 5.8 41 36-76 30-70 (106)
135 2daf_A FLJ35834 protein; hypot 98.9 3.5E-09 1.2E-13 60.0 5.3 42 35-76 29-70 (118)
136 3l0w_B Monoubiquitinated proli 98.9 4E-09 1.4E-13 63.0 5.7 42 35-76 13-54 (169)
137 3b08_A Polyubiquitin-C, ubiqui 98.9 4.8E-09 1.7E-13 60.7 5.6 48 1-48 87-135 (152)
138 1v86_A DNA segment, CHR 7, way 98.9 1.7E-09 5.8E-14 59.1 3.4 40 35-74 29-68 (95)
139 1we6_A Splicing factor, putati 98.8 4.5E-09 1.6E-13 58.7 4.7 41 35-75 43-84 (111)
140 1x1m_A Ubiquitin-like protein 98.8 3.7E-09 1.3E-13 58.8 4.2 47 2-48 27-86 (107)
141 2xzm_9 RPS31E; ribosome, trans 98.8 3.8E-10 1.3E-14 68.6 0.0 41 35-75 13-53 (189)
142 2dzj_A Synaptic glycoprotein S 98.8 5.4E-10 1.8E-14 60.4 0.5 45 4-48 26-75 (88)
143 4b6w_A Tubulin-specific chaper 98.8 5.7E-09 2E-13 56.2 4.3 40 36-75 18-64 (86)
144 2ojr_A Ubiquitin; lanthide-bin 98.8 1.3E-08 4.6E-13 56.8 5.9 40 36-75 49-88 (111)
145 3q3f_A Ribonuclease/ubiquitin 98.8 7.3E-09 2.5E-13 63.0 5.2 41 36-76 119-159 (189)
146 3b1l_X E3 ubiquitin-protein li 98.3 7.2E-10 2.5E-14 57.7 0.0 40 36-75 14-53 (76)
147 3shq_A UBLCP1; phosphatase, hy 98.8 3.5E-09 1.2E-13 68.7 3.1 47 2-48 16-66 (320)
148 1x1m_A Ubiquitin-like protein 98.8 1.7E-08 5.8E-13 56.1 5.2 38 39-76 40-81 (107)
149 2kjr_A CG11242; UBL, ubiquitin 98.7 2.4E-08 8.2E-13 54.6 5.4 42 34-75 29-76 (95)
150 2kj6_A Tubulin folding cofacto 98.7 1.9E-08 6.4E-13 55.3 4.9 36 35-70 29-64 (97)
151 3u5e_m 60S ribosomal protein L 98.7 1.3E-09 4.6E-14 62.3 0.0 42 35-76 13-54 (128)
152 3ai5_A Yeast enhanced green fl 98.7 9.4E-09 3.2E-13 66.5 3.9 47 2-48 245-292 (307)
153 2dzm_A FAS-associated factor 1 98.7 1.7E-08 5.9E-13 55.7 4.4 39 36-75 22-62 (100)
154 2dzj_A Synaptic glycoprotein S 98.7 2.1E-08 7.2E-13 54.1 4.2 41 35-75 25-69 (88)
155 1v2y_A 3300001G02RIK protein; 98.7 8.7E-09 3E-13 57.4 2.7 39 36-74 21-74 (105)
156 4efo_A Serine/threonine-protei 98.7 4.9E-08 1.7E-12 53.3 5.5 34 3-36 26-59 (94)
157 3u5c_f 40S ribosomal protein S 98.7 2.2E-09 7.5E-14 63.3 0.0 42 35-76 13-54 (152)
158 4efo_A Serine/threonine-protei 98.7 4.5E-08 1.5E-12 53.5 5.2 39 35-73 26-64 (94)
159 1wf9_A NPL4 family protein; be 98.6 6.4E-09 2.2E-13 57.9 1.3 35 3-37 19-54 (107)
160 1oqy_A HHR23A, UV excision rep 98.6 8.4E-09 2.9E-13 68.1 1.0 47 2-48 19-69 (368)
161 1v6e_A Cytoskeleton-associated 98.6 7.4E-08 2.5E-12 52.4 4.2 36 34-69 20-55 (95)
162 1wia_A Hypothetical ubiquitin- 98.5 6.1E-08 2.1E-12 52.5 3.4 44 2-48 19-64 (95)
163 3ai5_A Yeast enhanced green fl 98.5 1.5E-07 5.1E-12 60.9 5.6 40 36-75 247-286 (307)
164 1wia_A Hypothetical ubiquitin- 98.5 2E-07 6.8E-12 50.5 5.2 38 35-75 20-57 (95)
165 2io1_B Small ubiquitin-related 98.5 1.1E-07 3.6E-12 51.9 3.1 47 2-48 19-66 (94)
166 1oqy_A HHR23A, UV excision rep 98.5 1.7E-07 6E-12 61.8 4.5 41 35-75 20-63 (368)
167 3shq_A UBLCP1; phosphatase, hy 98.5 1E-07 3.5E-12 61.9 3.3 41 35-75 17-60 (320)
168 2kzr_A Ubiquitin thioesterase 98.4 2.3E-07 7.8E-12 49.5 3.9 45 4-48 13-64 (86)
169 1t0y_A Tubulin folding cofacto 98.4 3.9E-07 1.3E-11 51.7 4.9 36 34-69 19-54 (122)
170 3a4r_A Nfatc2-interacting prot 98.4 1.9E-06 6.5E-11 45.4 7.0 47 2-48 20-67 (79)
171 1wm3_A Ubiquitin-like protein 98.4 2.1E-07 7E-12 48.3 3.0 47 2-48 13-60 (72)
172 1wjn_A Tubulin-folding protein 98.4 6.2E-07 2.1E-11 48.8 5.0 47 2-48 24-79 (97)
173 2io0_B Small ubiquitin-related 98.3 3.9E-07 1.3E-11 49.4 3.1 47 2-48 17-64 (91)
174 2io1_B Small ubiquitin-related 98.2 2.3E-06 7.7E-11 46.6 4.9 41 36-76 21-61 (94)
175 2k8h_A Small ubiquitin protein 98.2 1.3E-06 4.6E-11 48.8 3.9 47 2-48 38-85 (110)
176 2d07_B Ubiquitin-like protein 98.2 1.2E-06 4.2E-11 47.5 3.4 38 37-74 32-69 (93)
177 1wm3_A Ubiquitin-like protein 98.2 3.8E-06 1.3E-10 43.4 4.9 41 36-76 15-55 (72)
178 3a4r_A Nfatc2-interacting prot 98.1 7.2E-06 2.5E-10 43.1 5.5 41 36-76 22-62 (79)
179 2io0_B Small ubiquitin-related 98.1 7.3E-06 2.5E-10 44.3 5.2 41 36-76 19-59 (91)
180 1wz0_A Ubiquitin-like protein 98.1 1.7E-06 5.7E-11 48.0 2.2 46 3-48 37-83 (104)
181 2eke_C Ubiquitin-like protein 98.1 2.9E-06 9.8E-11 47.2 3.1 47 2-48 42-89 (106)
182 1wf9_A NPL4 family protein; be 98.1 1.6E-06 5.5E-11 48.0 2.0 35 36-70 20-55 (107)
183 2d07_B Ubiquitin-like protein 98.0 1.7E-05 5.8E-10 42.9 5.4 47 2-48 29-76 (93)
184 2kzr_A Ubiquitin thioesterase 97.9 7.5E-06 2.6E-10 43.5 2.8 35 39-73 17-53 (86)
185 2eke_C Ubiquitin-like protein 97.9 2.8E-05 9.6E-10 43.2 4.9 41 36-76 44-84 (106)
186 2k8h_A Small ubiquitin protein 97.9 1.8E-05 6.1E-10 44.3 3.9 40 36-75 40-79 (110)
187 1wz0_A Ubiquitin-like protein 97.8 2E-05 6.9E-10 43.6 3.9 41 36-76 38-78 (104)
188 1wjn_A Tubulin-folding protein 97.7 7E-05 2.4E-09 40.5 5.0 34 36-69 26-59 (97)
189 3kyd_D Small ubiquitin-related 97.4 0.00046 1.6E-08 38.8 5.0 41 36-76 54-94 (115)
190 3pge_A SUMO-modified prolifera 97.4 0.00036 1.2E-08 42.7 4.9 41 36-76 42-82 (200)
191 2pjh_A Protein NPL4, nuclear p 97.3 0.00013 4.4E-09 38.4 2.3 36 2-37 15-50 (80)
192 3kyd_D Small ubiquitin-related 97.3 0.00022 7.5E-09 40.1 3.1 47 2-48 52-99 (115)
193 3pge_A SUMO-modified prolifera 97.1 0.00028 9.5E-09 43.2 2.8 47 2-48 40-87 (200)
194 3goe_A DNA repair protein RAD6 96.9 0.0013 4.3E-08 34.7 3.5 45 4-48 23-69 (82)
195 3tix_A Ubiquitin-like protein 96.8 0.00083 2.8E-08 41.1 2.9 39 37-75 71-109 (207)
196 3tix_A Ubiquitin-like protein 96.8 0.0019 6.5E-08 39.5 4.4 47 2-48 68-115 (207)
197 3goe_A DNA repair protein RAD6 96.8 0.0058 2E-07 32.2 5.4 41 36-76 23-64 (82)
198 1oey_A P67-PHOX, neutrophil cy 96.5 0.0075 2.6E-07 32.0 4.7 34 2-35 15-48 (83)
199 3uf8_A Ubiquitin-like protein 96.5 0.0052 1.8E-07 37.5 4.7 39 37-75 35-73 (209)
200 2kvr_A Ubiquitin carboxyl-term 96.4 0.0066 2.3E-07 34.6 4.4 32 4-35 59-90 (130)
201 3v7o_A Minor nucleoprotein VP3 96.3 0.00067 2.3E-08 42.0 0.0 45 4-48 34-79 (227)
202 2jxx_A Nfatc2-interacting prot 96.2 0.04 1.4E-06 29.9 6.9 46 3-48 39-85 (97)
203 3uf8_A Ubiquitin-like protein 96.2 0.0041 1.4E-07 38.0 3.2 47 3-49 33-80 (209)
204 3v7o_A Minor nucleoprotein VP3 95.8 0.0016 5.5E-08 40.3 0.0 41 36-76 34-74 (227)
205 2kc2_A Talin-1, F1; FERM, adhe 95.7 0.085 2.9E-06 30.0 6.9 28 2-29 23-50 (128)
206 2jxx_A Nfatc2-interacting prot 95.7 0.045 1.6E-06 29.7 5.5 41 36-76 40-80 (97)
207 2ylm_A Ubiquitin carboxyl-term 95.6 0.068 2.3E-06 36.8 7.6 33 3-35 38-70 (530)
208 2al3_A TUG long isoform; TUG U 94.9 0.086 3E-06 28.3 5.0 38 37-74 24-61 (90)
209 2pjh_A Protein NPL4, nuclear p 94.7 0.015 5.1E-07 30.3 1.7 36 36-71 17-52 (80)
210 3ix6_A TS, tsase, thymidylate 94.4 0.0073 2.5E-07 39.9 0.0 36 38-73 36-71 (360)
211 2l76_A Nfatc2-interacting prot 93.8 0.2 6.7E-06 27.1 5.0 37 38-74 36-72 (95)
212 2l76_A Nfatc2-interacting prot 93.8 0.15 5E-06 27.6 4.5 46 3-48 33-79 (95)
213 2al3_A TUG long isoform; TUG U 93.7 0.4 1.4E-05 25.6 6.4 48 1-48 20-68 (90)
214 2kvr_A Ubiquitin carboxyl-term 93.5 0.094 3.2E-06 29.8 3.5 31 36-66 59-89 (130)
215 4da1_A Protein phosphatase 1K, 92.8 0.019 6.6E-07 37.7 0.0 43 5-47 44-87 (389)
216 4da1_A Protein phosphatase 1K, 92.8 0.02 6.7E-07 37.7 0.0 41 36-76 43-83 (389)
217 4a3p_A Ubiquitin carboxyl-term 92.8 0.97 3.3E-05 27.5 7.8 59 3-69 142-209 (217)
218 3ix6_A TS, tsase, thymidylate 92.6 0.021 7.2E-07 37.7 0.0 47 3-49 33-80 (360)
219 4eut_A Serine/threonine-protei 92.1 0.21 7.1E-06 32.3 4.2 32 4-35 325-356 (396)
220 2r2o_A Plexin-B1; effector dom 91.6 0.31 1E-05 28.1 4.0 27 2-28 42-70 (138)
221 3jyu_A Ubiquitin carboxyl-term 90.3 1.1 3.7E-05 27.6 5.9 33 3-35 154-187 (231)
222 4e74_A Plexin-A4; RBD, structu 90.3 0.49 1.7E-05 26.5 4.0 27 3-29 29-57 (117)
223 3qa8_A MGC80376 protein; kinas 89.7 0.28 9.4E-06 34.8 3.2 45 3-47 324-370 (676)
224 4e71_A Plexin-B2, MM1; transme 89.4 0.39 1.3E-05 26.6 3.1 27 3-29 26-54 (111)
225 3h6n_A Plexin-D1; structural g 88.4 0.8 2.8E-05 26.0 4.0 26 3-28 19-46 (127)
226 3kuz_A Plexin-C1; structural g 88.1 0.58 2E-05 26.5 3.2 28 2-29 40-71 (126)
227 1oey_A P67-PHOX, neutrophil cy 86.9 1.6 5.6E-05 22.9 4.4 36 35-70 16-51 (83)
228 2ylm_A Ubiquitin carboxyl-term 84.2 1.1 3.9E-05 30.7 3.7 31 36-66 39-69 (530)
229 4eut_A Serine/threonine-protei 82.4 2.6 8.9E-05 27.1 4.8 35 36-70 325-359 (396)
230 4gdk_A Ubiquitin-like protein 79.8 3.3 0.00011 21.9 3.8 49 5-53 24-75 (91)
231 1pqs_A Cell division control p 76.3 4.8 0.00016 20.7 3.7 50 2-51 3-63 (77)
232 1wgr_A Growth factor receptor- 75.2 4.8 0.00016 21.8 3.7 47 2-48 21-75 (100)
233 3qa8_A MGC80376 protein; kinas 72.9 4.8 0.00016 28.5 4.1 35 36-70 325-359 (676)
234 3ivf_A Talin-1; FERM domain, c 69.1 20 0.00068 23.1 7.7 65 3-67 15-131 (371)
235 1ip9_A BEM1 protein; ubiquitin 68.6 11 0.00037 19.8 4.7 25 2-26 23-47 (85)
236 3m95_A Autophagy related prote 66.4 15 0.00051 20.6 4.9 52 6-57 58-111 (125)
237 3ig3_A Plxna3 protein; plexin 66.1 8.7 0.0003 27.2 4.2 27 2-28 248-276 (627)
238 3he4_B Synzip5; heterodimeric 66.1 4.7 0.00016 18.1 1.9 15 10-24 2-16 (46)
239 3hm6_X Plexin-B1; structural g 66.0 8.2 0.00028 27.4 4.0 27 3-29 276-304 (644)
240 2v1y_A Phosphatidylinositol-4, 63.9 10 0.00034 20.8 3.4 21 3-23 32-52 (108)
241 2juo_A GA-binding protein alph 62.4 15 0.00052 19.3 4.4 28 7-34 9-36 (89)
242 2r2q_A Gamma-aminobutyric acid 62.1 17 0.00058 19.7 5.0 49 6-54 49-99 (110)
243 3rui_B Autophagy-related prote 61.0 19 0.00064 19.9 5.2 52 6-57 52-105 (118)
244 2bps_A YUKD protein; ubiquitin 60.7 12 0.00041 19.3 3.2 28 1-28 17-44 (81)
245 4gmv_A RAS-associated and plec 59.9 16 0.00056 23.1 4.3 30 2-31 43-72 (281)
246 3ra3_A P1C; coiled coil domain 59.2 7.1 0.00024 15.7 1.7 12 12-23 15-26 (28)
247 3po0_A Small archaeal modifier 58.7 13 0.00045 18.8 3.2 22 3-24 20-41 (89)
248 1wgy_A RAP guanine nucleotide 58.6 15 0.00052 19.9 3.5 32 3-34 22-53 (104)
249 3qx1_A FAS-associated factor 1 58.3 17 0.00057 18.4 4.9 31 3-34 20-50 (84)
250 1c1y_B Proto-onkogene serine/t 57.6 16 0.00054 18.8 3.3 30 4-33 15-44 (77)
251 3h9d_A ATG8, microtubule-assoc 57.2 23 0.00077 19.6 6.4 52 6-57 53-106 (119)
252 2dzk_A UBX domain-containing p 55.8 22 0.00075 19.0 4.9 34 2-35 25-58 (109)
253 1eo6_A GATE-16, golgi-associat 55.5 24 0.00081 19.3 5.0 50 6-55 50-101 (117)
254 2l05_A Serine/threonine-protei 52.2 23 0.00077 19.0 3.5 30 4-33 31-60 (95)
255 3r8s_T 50S ribosomal protein L 51.1 26 0.00089 18.5 3.9 26 36-61 31-56 (93)
256 1wj4_A KIAA0794 protein; UBX d 50.4 30 0.001 19.0 4.2 32 3-35 56-87 (124)
257 2zjd_A Microtubule-associated 49.3 33 0.0011 19.2 5.7 49 6-54 58-109 (130)
258 1vq8_S 50S ribosomal protein L 47.8 29 0.00098 18.0 3.9 29 2-30 24-52 (85)
259 1wxm_A A-RAF proto-oncogene se 47.4 22 0.00074 18.7 2.9 29 4-32 21-49 (86)
260 3tve_T 50S ribosomal protein L 47.0 31 0.0011 18.2 3.8 26 3-28 24-49 (92)
261 4a3p_A Ubiquitin carboxyl-term 46.9 44 0.0015 20.0 4.6 31 36-66 143-174 (217)
262 1q1o_A Cell division control p 46.0 20 0.00068 19.3 2.7 26 2-27 24-49 (98)
263 2qjl_A URM1, ubiquitin-related 45.9 31 0.0011 17.9 3.8 22 3-24 22-45 (99)
264 3tca_A Amyloid beta A4 precurs 44.2 52 0.0018 19.9 5.4 30 2-31 46-75 (291)
265 1ef1_A Moesin; membrane, FERM 41.2 39 0.0013 20.8 3.9 27 2-28 12-38 (294)
266 3j21_T 50S ribosomal protein L 40.9 39 0.0013 17.6 3.8 29 2-30 25-53 (86)
267 2zjr_Q 50S ribosomal protein L 39.9 39 0.0013 17.9 3.2 29 3-31 25-53 (95)
268 2l5g_A GPS2 protein, G protein 38.6 4.2 0.00014 18.1 -0.6 17 7-23 4-20 (38)
269 2l32_A Small archaeal modifier 38.6 38 0.0013 16.8 3.4 31 38-72 16-46 (74)
270 1rrb_A RAF-1 RBD, RAF proto-on 38.3 49 0.0017 18.1 3.5 28 4-31 32-59 (107)
271 3ny5_A Serine/threonine-protei 37.6 48 0.0016 17.7 3.3 29 4-32 27-55 (96)
272 1h4r_A Merlin; FERM, neurofibr 37.3 52 0.0018 20.5 4.1 34 2-35 33-67 (314)
273 2kjs_A Putative acyl carrier p 37.0 23 0.00078 18.1 2.0 50 11-60 2-54 (87)
274 1pdo_A Mannose permease; phosp 35.9 55 0.0019 17.9 4.4 32 3-34 31-63 (135)
275 3lfh_A Manxa, phosphotransfera 35.8 47 0.0016 18.6 3.4 33 3-35 33-67 (144)
276 3qij_A Protein 4.1; cytoskelet 35.1 53 0.0018 20.5 3.8 34 2-35 29-63 (296)
277 4f2d_A L-arabinose isomerase; 35.1 90 0.0031 21.3 5.1 42 4-54 450-491 (500)
278 2dhz_A RAP guanine nucleotide 34.3 56 0.0019 18.1 3.4 32 3-34 22-59 (120)
279 1vjk_A Molybdopterin convertin 33.9 51 0.0018 16.9 3.5 21 3-23 29-49 (98)
280 2zkr_s 60S ribosomal protein L 33.5 71 0.0024 18.6 3.9 29 2-30 95-123 (156)
281 3hk0_A Growth factor receptor- 33.4 40 0.0014 21.0 3.0 28 2-29 20-47 (256)
282 3syn_E ATP-binding protein YLX 33.0 16 0.00056 14.0 0.7 18 7-24 3-20 (23)
283 1xez_A Hemolysin, cytolysin; p 32.9 77 0.0026 22.9 4.5 55 12-72 44-102 (721)
284 3rpf_C Molybdopterin convertin 32.8 47 0.0016 16.1 2.9 20 5-25 16-35 (74)
285 3e20_C Eukaryotic peptide chai 31.5 91 0.0031 20.9 4.6 63 3-72 40-106 (441)
286 3ivf_A Talin-1; FERM domain, c 30.8 75 0.0026 20.3 4.1 27 2-28 97-123 (371)
287 4dxe_H ACP, acyl carrier prote 29.7 43 0.0015 17.5 2.4 58 4-61 19-79 (101)
288 3gx1_A LIN1832 protein; APC633 29.1 76 0.0026 17.4 4.8 33 3-35 34-67 (130)
289 3azd_A Short alpha-tropomyosin 27.7 28 0.00096 15.1 1.2 14 10-23 3-16 (37)
290 1f80_D Acyl carrier protein; t 27.6 21 0.00073 17.3 0.9 52 9-61 5-60 (81)
291 3u5e_X 60S ribosomal protein L 26.8 95 0.0032 17.8 3.8 29 2-30 81-109 (142)
292 1wmh_B Partitioning defective- 26.4 76 0.0026 16.5 4.1 35 1-35 18-52 (86)
293 4a17_R RPL23A, 60S ribosomal p 26.2 1E+02 0.0034 17.8 3.8 29 2-30 89-117 (150)
294 1e0g_A Membrane-bound lytic mu 25.8 49 0.0017 14.1 2.4 22 3-28 3-24 (48)
295 1s3s_G P47 protein; AAA ATPase 25.7 89 0.003 17.1 3.6 46 3-48 65-115 (127)
296 3da8_A Probable 5'-phosphoribo 25.7 63 0.0022 19.5 2.9 21 3-23 162-182 (215)
297 3ipr_A PTS system, IIA compone 25.7 95 0.0032 17.4 3.5 19 4-22 32-50 (150)
298 2c7h_A RBBP6, retinoblastoma-b 25.7 79 0.0027 16.5 3.2 19 10-28 28-46 (86)
299 1h1j_S THO1 protein; SAP domai 25.6 60 0.0021 15.1 2.2 19 10-29 7-25 (51)
300 2ywr_A Phosphoribosylglycinami 25.4 65 0.0022 19.3 2.9 21 3-23 153-173 (216)
301 3av3_A Phosphoribosylglycinami 25.4 65 0.0022 19.2 2.9 21 3-23 155-175 (212)
302 1vd2_A Protein kinase C, IOTA 25.3 80 0.0027 16.4 5.1 28 3-30 18-45 (89)
303 2jsx_A Protein NAPD; TAT, proo 25.1 82 0.0028 16.5 4.5 55 3-58 10-69 (95)
304 3au4_A Myosin-X; protein-prote 25.0 99 0.0034 21.0 4.0 27 2-28 228-254 (555)
305 3kcq_A Phosphoribosylglycinami 24.9 67 0.0023 19.4 2.9 22 3-24 155-176 (215)
306 1dd4_C 50S ribosomal protein L 24.6 57 0.0019 14.4 2.2 14 15-28 20-33 (40)
307 3p9x_A Phosphoribosylglycinami 24.5 69 0.0024 19.3 2.9 21 3-23 154-174 (211)
308 3cjl_A Domain of unknown funct 24.5 71 0.0024 16.7 2.6 27 2-28 19-45 (88)
309 4ds3_A Phosphoribosylglycinami 24.3 70 0.0024 19.2 2.9 21 3-23 159-179 (209)
310 3auf_A Glycinamide ribonucleot 24.1 70 0.0024 19.4 2.9 21 3-23 174-194 (229)
311 3mb2_A 4-oxalocrotonate tautom 24.1 69 0.0024 15.3 5.5 33 3-35 4-43 (72)
312 4dh4_A MIF; trimer, isomerase; 24.0 87 0.003 16.4 3.2 22 14-35 78-99 (114)
313 3b64_A Macrophage migration in 24.0 85 0.0029 16.3 3.2 22 14-35 78-99 (112)
314 1meo_A Phosophoribosylglycinam 23.8 72 0.0025 19.0 2.9 21 3-23 152-172 (209)
315 2q5w_D Molybdopterin convertin 23.8 46 0.0016 16.0 1.7 20 4-23 19-38 (77)
316 1he7_A High affinity nerve gro 23.4 75 0.0026 17.3 2.7 19 56-74 25-43 (126)
317 2ktr_A Sequestosome-1; autopha 23.3 1E+02 0.0035 17.0 3.5 26 10-35 56-82 (117)
318 1jkx_A GART;, phosphoribosylgl 23.3 75 0.0026 19.0 2.9 21 3-23 152-172 (212)
319 1uiz_A MIF, macrophage migrati 23.0 91 0.0031 16.2 6.9 59 13-71 20-103 (115)
320 3iz5_X 60S ribosomal protein L 22.9 1.1E+02 0.0036 17.7 3.3 29 2-30 91-119 (152)
321 2al6_A Focal adhesion kinase 1 22.8 1.2E+02 0.004 19.6 3.9 50 2-51 23-80 (375)
322 3tqr_A Phosphoribosylglycinami 22.6 79 0.0027 19.1 2.9 21 3-23 156-176 (215)
323 3o1l_A Formyltetrahydrofolate 22.5 75 0.0026 20.2 2.9 22 3-24 254-275 (302)
324 3lou_A Formyltetrahydrofolate 22.5 76 0.0026 20.1 2.9 22 3-24 244-265 (292)
325 3djh_A Macrophage migration in 22.2 97 0.0033 16.2 3.2 22 14-35 77-98 (114)
326 2y3a_A Phosphatidylinositol-4, 22.0 93 0.0032 23.6 3.6 22 2-23 63-84 (1092)
327 3n0v_A Formyltetrahydrofolate 21.9 79 0.0027 19.9 2.9 22 3-24 239-260 (286)
328 2cr5_A Reproduction 8; UBX dom 21.7 1E+02 0.0035 16.3 6.0 45 3-48 36-85 (109)
329 3nrb_A Formyltetrahydrofolate 21.7 80 0.0028 19.9 2.9 22 3-24 238-259 (287)
330 3obi_A Formyltetrahydrofolate 21.7 81 0.0028 19.9 2.9 22 3-24 239-260 (288)
331 2i1j_A Moesin; FERM, coiled-co 21.1 1.3E+02 0.0046 20.8 4.1 27 2-28 15-41 (575)
332 2os5_A Acemif; macrophage migr 20.4 1.1E+02 0.0037 16.1 7.1 59 13-71 20-103 (119)
333 3kan_A D-dopachrome tautomeras 20.2 1.1E+02 0.0038 16.2 3.2 22 14-35 78-99 (117)
334 1zrj_A E1B-55KDA-associated pr 20.1 82 0.0028 14.6 2.2 18 10-28 12-29 (50)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.84 E-value=2.7e-20 Score=110.01 Aligned_cols=76 Identities=28% Similarity=0.390 Sum_probs=70.9
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEE-E--------------------------------------------
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLI-T-------------------------------------------- 35 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~-------------------------------------------- 35 (77)
++++++|++++||++||.+|++..|+|+++|+|+ |
T Consensus 13 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m~i~vk~~~g~ 92 (159)
T 3rt3_B 13 NEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPLSILVRNNKGR 92 (159)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCEEEEEECTTSC
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcEEEEEECCCCC
Confidence 4689999999999999999999999999999999 7
Q ss_pred --EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 --TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 --~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+++++++||.++|..|++..|+|+++|+|+|+|+.|+|..
T Consensus 93 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~ 135 (159)
T 3rt3_B 93 SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQL 135 (159)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCC
Confidence 35788899999999999999999999999999999999863
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=112.16 Aligned_cols=75 Identities=69% Similarity=0.910 Sum_probs=70.8
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEE--------------------------------------------EE
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLIT--------------------------------------------TL 37 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~--------------------------------------------~~ 37 (77)
++.++|++++||++||.+|++..|+|+++|+|+| .+
T Consensus 32 ~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~Vk~~~g~~~~l 111 (172)
T 3u30_A 32 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL 111 (172)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEEEEESSCCEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccceeecccCcceeE
Confidence 5889999999999999999999999999999999 45
Q ss_pred EecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 38 EVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 38 ~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+++++||.++|.+|+...|+|+++|+|+|+|+.|+|..
T Consensus 112 ~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~ 150 (172)
T 3u30_A 112 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 150 (172)
T ss_dssp EECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTS
T ss_pred EecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCC
Confidence 788999999999999999999999999999999999863
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.79 E-value=1.1e-18 Score=101.84 Aligned_cols=75 Identities=69% Similarity=0.931 Sum_probs=70.2
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEE--------------------------------------------E
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLIT--------------------------------------------T 36 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~--------------------------------------------~ 36 (77)
+++.++|++++||++||.+|++..|+|++.|+|+| .
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~Vk~~~g~~~~ 90 (152)
T 3b08_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 90 (152)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEEEEESSSCEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccccceeeeecCCCEEE
Confidence 36789999999999999999999999999999999 3
Q ss_pred EEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 37 LEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 37 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.+++++||.++|..|+...|+|+++|+|+|+|+.|+|.
T Consensus 91 ~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~ 129 (152)
T 3b08_A 91 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 129 (152)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT
T ss_pred EEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCC
Confidence 567889999999999999999999999999999999875
No 4
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.44 E-value=2.2e-13 Score=74.53 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=37.9
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++++|+|||++||++|++++|+|+++|+|+|.+ .+++..|+.++
T Consensus 32 kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY 80 (93)
T 3plu_A 32 KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY 80 (93)
T ss_dssp CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGG
T ss_pred CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHc
Confidence 4577888888888888888888888888888888875 55777777776
No 5
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=3.3e-13 Score=74.83 Aligned_cols=57 Identities=12% Similarity=0.278 Sum_probs=48.7
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHHHHHHhhccCCCccceEEE
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNVKSKIQDKEGIPPDQQRLI 66 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~lK~~i~~~~gip~~~q~l~ 66 (77)
+++++|++++||++||++|++++|+|+++|+|+|.+ .+.++.|+.++ ++......++
T Consensus 31 ~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y--------~I~~gsti~v 88 (100)
T 1wju_A 31 KNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQ--------GVAHNVKAMV 88 (100)
T ss_dssp SEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHH--------TCCSSEEEEE
T ss_pred EEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHc--------CCCCCCEEEE
Confidence 688999999999999999999999999999999986 56888899988 6666555444
No 6
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=4.3e-13 Score=74.35 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=43.1
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++|+|++||++||++|++++|+|+++|+|+|.+ .++++.++.++
T Consensus 39 k~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dy 87 (100)
T 1uh6_A 39 KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 87 (100)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHc
Confidence 3588999999999999999999999999999999986 55788899988
No 7
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.38 E-value=5.2e-13 Score=72.36 Aligned_cols=47 Identities=4% Similarity=0.198 Sum_probs=41.5
Q ss_pred eEEEEee--CCCcHHHHHHHh-hhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWK--APTPLINVKAKI-QDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~--~~~tv~~lK~~i-~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++++|+ +++||++||++| ++.+|+|+++|+|+|.+ .+.++.+++++
T Consensus 13 ~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 13 KFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDL 63 (87)
T ss_dssp CEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHH
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHc
Confidence 4677766 999999999999 99999999999999986 56888999988
No 8
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.37 E-value=5.9e-13 Score=75.70 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=44.0
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||++||.+|++++|||+++|+|+|.+ .++++.++.++
T Consensus 13 ti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy 60 (118)
T 2fnj_B 13 TIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHH
T ss_pred EEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHc
Confidence 588999999999999999999999999999999986 66889999998
No 9
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.33 E-value=6.3e-13 Score=75.50 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=43.9
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNVK 49 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~lK 49 (77)
++.+++++++||.+||.+|++++|||+++|+|+|.+ .++++.|+.+++
T Consensus 13 TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~ 61 (118)
T 4ajy_B 13 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 61 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTT
T ss_pred EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcC
Confidence 678899999999999999999999999999999986 568899999883
No 10
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.31 E-value=3.9e-12 Score=69.58 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=39.0
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+.+++||.++|+.|+++.|+|+++|+|+|+|++|+|..
T Consensus 35 ~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~ 75 (93)
T 3plu_A 35 RVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHI 75 (93)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTS
T ss_pred EEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcC
Confidence 57889999999999999999999999999999999999975
No 11
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.31 E-value=3.2e-12 Score=68.65 Aligned_cols=48 Identities=25% Similarity=0.280 Sum_probs=42.8
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-E-ecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-E-VKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~-v~~~~tv~~l 48 (77)
+++.++|++++||++||++|++..|+|+++|+|+|.+ . ++++.+++++
T Consensus 21 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y 70 (84)
T 2kk8_A 21 SSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70 (84)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHH
T ss_pred cEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHc
Confidence 4688999999999999999999999999999999986 4 5788888888
No 12
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=5.8e-12 Score=69.79 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=39.2
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
+.+++++++||.++|+.|++++|+|+++|+|+|+|++|+|.-
T Consensus 32 ~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~ 73 (100)
T 1wju_A 32 NLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGK 73 (100)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTS
T ss_pred EEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCC
Confidence 467899999999999999999999999999999999999863
No 13
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.27 E-value=1.6e-11 Score=67.44 Aligned_cols=47 Identities=6% Similarity=0.041 Sum_probs=41.9
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE------Ee-cCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL------EV-KSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~------~v-~~~~tv~~l 48 (77)
++.+++++++||++||++|+..+|||+++|+|+|.. .+ +++.++.++
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y 82 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYY 82 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHH
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHC
Confidence 578999999999999999999999999999999973 34 678888887
No 14
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.27 E-value=3.5e-12 Score=67.26 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=39.2
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++|++++||++||.+|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 15 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~ 63 (79)
T 3phx_B 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY 63 (79)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG
T ss_pred CEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHC
Confidence 3577888888888888888888888888888888875 56777777776
No 15
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.4e-11 Score=68.24 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=42.6
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEE--EEEecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLIT--TLEVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~--~~~v~~~~tv~~l 48 (77)
+++++++++++||++||++|++++||||++|+|+| ...+.++.++.++
T Consensus 19 k~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~ 68 (100)
T 2dzm_A 19 RNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSL 68 (100)
T ss_dssp CEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHH
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHc
Confidence 46889999999999999999999999999999986 3457778888888
No 16
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.24 E-value=5.2e-12 Score=70.50 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=40.7
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEEEe-cCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTLEV-KSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~~v-~~~~tv~~l 48 (77)
+++++|+|++||++||++|++++|||++.|||+|...+ +++.|+.++
T Consensus 38 ~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~y 85 (105)
T 4dbg_A 38 TIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSH 85 (105)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGG
T ss_pred eEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHc
Confidence 57899999999999999999999999999998887644 678888887
No 17
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.23 E-value=1.3e-11 Score=65.02 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=42.4
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++|++++||++||++|++..|+|+++|+|+|.+ .+.++.|+.++
T Consensus 14 ~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~ 62 (79)
T 2uyz_B 14 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 62 (79)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHH
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHc
Confidence 3578899999999999999999999999999999985 67888899888
No 18
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.22 E-value=2e-11 Score=67.26 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=41.0
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEEE--------ecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTLE--------VKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~~--------v~~~~tv~~l 48 (77)
.+.+++++++||++||++|+..+|||+++|+|+|... .+++.++.++
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y 82 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFF 82 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHH
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHC
Confidence 5789999999999999999999999999999999752 2667788877
No 19
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.22 E-value=2.1e-11 Score=66.00 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=36.4
Q ss_pred EEecCCccHHHHHHHH-hhccCCCccceEEEECCeEcCccc
Q 040720 37 LEVKSSDTINNVKSKI-QDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 37 ~~v~~~~tv~~lK~~i-~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
+++++++||.++|+.| ++..|+|+++|+|+|+|++|+|..
T Consensus 18 v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~ 58 (87)
T 2lxa_A 18 HDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNL 58 (87)
T ss_dssp EECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTC
T ss_pred EcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcC
Confidence 3455999999999999 999999999999999999999863
No 20
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.22 E-value=2.5e-11 Score=68.92 Aligned_cols=45 Identities=24% Similarity=0.228 Sum_probs=40.9
Q ss_pred ceEEEEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 31 QRLITTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 31 q~L~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
++..+.+++.+++||.++|..|+...|+|+++|+|+|+|++|+|.
T Consensus 10 ~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~ 54 (118)
T 4ajy_B 10 HKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDG 54 (118)
T ss_dssp BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT
T ss_pred CCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCc
Confidence 445556789999999999999999999999999999999999885
No 21
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.21 E-value=1.4e-11 Score=66.35 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=42.4
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++|++++||++||.+|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 15 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~ 63 (88)
T 2hj8_A 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY 63 (88)
T ss_dssp CEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHH
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHc
Confidence 3578999999999999999999999999999999986 56788888888
No 22
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.21 E-value=2.2e-11 Score=65.63 Aligned_cols=48 Identities=27% Similarity=0.505 Sum_probs=41.4
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++|++++||++||.+|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 11 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~ 59 (88)
T 4fbj_B 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY 59 (88)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHc
Confidence 3678899999999999999999999999999999975 56778888876
No 23
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.20 E-value=5.7e-11 Score=64.89 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=40.1
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCC-ccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSS-DTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~-~tv~~l 48 (77)
++.++|++++||++||.+|++..|+|+++|+|+|.+ .+.++ .++.++
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~y 74 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEY 74 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHC
Confidence 577899999999999999999999999999999875 56677 788887
No 24
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.20 E-value=3.4e-11 Score=68.41 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=40.1
Q ss_pred EEEEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 33 LITTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 33 L~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
..+.+++++++||.++|..|+.+.|+|+++|+|+|+|++|+|.-
T Consensus 12 tti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~ 55 (118)
T 2fnj_B 12 TTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGK 55 (118)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTS
T ss_pred EEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCC
Confidence 34567899999999999999999999999999999999999863
No 25
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.20 E-value=3.1e-11 Score=66.83 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=38.5
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+++++++||.++|+.|++++|+|+++|+|+|+|++|+|..
T Consensus 42 ~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~ 82 (100)
T 1uh6_A 42 RVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHV 82 (100)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCC
Confidence 57889999999999999999999999999999999999863
No 26
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.19 E-value=1.8e-11 Score=65.76 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=28.5
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||++||.+|++..|+|+++|+|+|.+ .+.++.++.++
T Consensus 29 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~ 76 (88)
T 4eew_A 29 TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76 (88)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHc
Confidence 355666666666666666666666666666666653 34555555554
No 27
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.19 E-value=8.2e-11 Score=64.06 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=41.0
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++|++++||++||.+|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y 76 (93)
T 2l7r_A 28 ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQC 76 (93)
T ss_dssp SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHC
Confidence 3578899999999999999999999999999999875 56778888887
No 28
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.19 E-value=7.5e-11 Score=64.65 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=39.1
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|.+++||++||.+|++..|+|+++|+|+|.+ .+.++.|+.++
T Consensus 33 ~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy 80 (97)
T 1wyw_B 33 EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 80 (97)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHC
Confidence 577888888888888888888888888888888875 56778888887
No 29
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.19 E-value=1.9e-11 Score=65.87 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=40.8
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++|++++||++||.+|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 16 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~ 64 (90)
T 4dwf_A 16 QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 64 (90)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHc
Confidence 3578899999999999999999999999999999875 56777788877
No 30
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.18 E-value=3.3e-11 Score=68.34 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=41.7
Q ss_pred CeEEEEeeCCCcHHHHHHHhhh------hhCC--CcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQD------KEGI--PPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~------~~gi--~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++++++|++++||++||++|++ ++|+ |+++|+|+|++ .+.++.++.++
T Consensus 27 ~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y 83 (116)
T 1wgh_A 27 KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL 83 (116)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTT
T ss_pred CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHc
Confidence 4689999999999999999998 6786 58999999986 66888898887
No 31
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.17 E-value=5.1e-11 Score=63.71 Aligned_cols=47 Identities=28% Similarity=0.497 Sum_probs=37.8
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||++||.+|++..|+|++.|+|+|.+ .++++.++.++
T Consensus 24 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~ 71 (88)
T 3dbh_I 24 EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY 71 (88)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHc
Confidence 577888888888888888888888888888888874 55677777776
No 32
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.17 E-value=7.2e-11 Score=63.85 Aligned_cols=47 Identities=47% Similarity=0.660 Sum_probs=35.4
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||++||.+|++..|+|++.|+|+|.+ .++++.++.++
T Consensus 29 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~ 76 (91)
T 3v6c_B 29 HITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 76 (91)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGG
T ss_pred EEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHC
Confidence 567778888888888888888888888888888764 45666676665
No 33
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.16 E-value=3.5e-11 Score=69.00 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=42.7
Q ss_pred CeEEEEeeCCCcHHHHHHHhhh------hhCCC--cccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQD------KEGIP--PDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~------~~gi~--~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++++++|++++||++||++|++ ++|+| +++|+|+|++ -+.++.+++++
T Consensus 28 ~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y 84 (125)
T 2gow_A 28 KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL 84 (125)
T ss_dssp CEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGG
T ss_pred CEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHc
Confidence 4689999999999999999998 78984 8999999987 66888999987
No 34
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.16 E-value=8.6e-11 Score=61.82 Aligned_cols=42 Identities=29% Similarity=0.440 Sum_probs=38.7
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
+.+.+++++||.++|..|++..|+|+++|+|+|+|+.|+|..
T Consensus 17 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~ 58 (79)
T 3phx_B 17 STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQL 58 (79)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTS
T ss_pred EEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCC
Confidence 357889999999999999999999999999999999998863
No 35
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.16 E-value=4.9e-11 Score=64.03 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=38.1
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.+++++++||++||.+|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 23 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~ 70 (85)
T 2kd0_A 23 SIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQS 70 (85)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTT
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHC
Confidence 567888888999999999988889988889988875 45667777666
No 36
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.16 E-value=8.5e-11 Score=61.02 Aligned_cols=47 Identities=28% Similarity=0.497 Sum_probs=40.1
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.+++++++||++||.+|++..|+|++.|+|+|.+ .++++.++.++
T Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~ 59 (76)
T 1ndd_A 12 EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY 59 (76)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGG
T ss_pred EEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHc
Confidence 578899999999999999999999999999999875 55777777776
No 37
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.16 E-value=6.2e-11 Score=61.86 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=38.7
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.+++++++||++||.+|++..|+|++.|+|+|.+ .+.++.++.++
T Consensus 15 ~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~ 62 (77)
T 2bwf_A 15 KWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62 (77)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG
T ss_pred EEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHc
Confidence 567888899999999999999999999999998875 55677777776
No 38
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.16 E-value=7e-11 Score=63.68 Aligned_cols=48 Identities=42% Similarity=0.639 Sum_probs=41.4
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++|++++||++||.+|++..|+|++.|+|+|.+ .+.++.++.++
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~ 68 (88)
T 1sif_A 20 KTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68 (88)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGG
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHc
Confidence 4678999999999999999999999999999999975 56777787776
No 39
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.15 E-value=7.9e-11 Score=62.51 Aligned_cols=47 Identities=47% Similarity=0.683 Sum_probs=39.5
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.+++++++||++||++|++..|+|++.|+|+|.. .++++.++.++
T Consensus 15 ~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~ 62 (85)
T 3n3k_B 15 TIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62 (85)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTT
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHC
Confidence 578889999999999999999999999999999875 56777777776
No 40
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.15 E-value=4.9e-11 Score=63.76 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=40.5
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||++||.+|++..|+|++.|+|+|.. .++++.++.++
T Consensus 19 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~ 66 (87)
T 1wh3_A 19 SYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66 (87)
T ss_dssp EEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHH
T ss_pred EEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHC
Confidence 578889999999999999999999999999999875 56778888887
No 41
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.14 E-value=5.7e-11 Score=66.13 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=39.7
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++|++++||++||.+|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 12 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~ 60 (106)
T 3m62_B 12 EKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSEC 60 (106)
T ss_dssp CEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTT
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHc
Confidence 3578888999999999999999999999999998875 55777777776
No 42
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.14 E-value=2e-10 Score=62.15 Aligned_cols=47 Identities=11% Similarity=0.285 Sum_probs=41.3
Q ss_pred eEEE-EeeCCCcHHHHHHHhhhhhCCCcccceEE---EEE-EecCCccHHHH
Q 040720 2 RLLL-MWKAPTPLINVKAKIQDKEGIPPDQQRLI---TTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~-~v~~~~tv~~lK~~i~~~~gi~~~~q~L~---~~~-~v~~~~tv~~l 48 (77)
++.+ ++++++||++||++|++.+|+|+++|+|+ |.+ .+.++.++.++
T Consensus 18 ~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~ 69 (90)
T 1v5t_A 18 EYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL 69 (90)
T ss_dssp EEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHc
Confidence 5778 99999999999999999999999999999 864 55777888887
No 43
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.14 E-value=1.1e-10 Score=62.05 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=39.5
Q ss_pred eEEEEeeCCCcHHHHHHHhhhh---hCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDK---EGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~---~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||++||++|++. +|+|+++|+|+|.+ .++++.++.++
T Consensus 17 ~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~ 67 (85)
T 2wyq_A 17 TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 67 (85)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGG
T ss_pred EEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHc
Confidence 5788999999999999999987 88999999999875 55677787776
No 44
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.14 E-value=2.3e-10 Score=61.41 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=41.7
Q ss_pred eEEE-EeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLL-MWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~-~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.+ +|++++||++||.+|++..|+|+++|+|+|.. .+.++.++.++
T Consensus 20 ~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~ 68 (89)
T 1wy8_A 20 TCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDY 68 (89)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHC
Confidence 6788 49999999999999999999999999999975 56788888888
No 45
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.13 E-value=3e-11 Score=66.64 Aligned_cols=43 Identities=5% Similarity=0.197 Sum_probs=29.6
Q ss_pred EeeCCCcHHHHHHHh-hhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 6 MWKAPTPLINVKAKI-QDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 6 ~v~~~~tv~~lK~~i-~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+|++++||++||++| ++..|+|+++|+|+|.+ .+.++.++.++
T Consensus 37 ~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy 81 (98)
T 4a20_A 37 DFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDL 81 (98)
T ss_dssp EECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGS
T ss_pred ecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHc
Confidence 455777777777777 66677777777777764 45666666665
No 46
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.13 E-value=2.5e-10 Score=60.50 Aligned_cols=48 Identities=46% Similarity=0.659 Sum_probs=40.3
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.+++++++||.+||++|++..|+|++.|+|+|.. .++++.++.++
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~ 62 (85)
T 3mtn_B 14 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62 (85)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHc
Confidence 3578899999999999999999999999999999874 56777777776
No 47
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.13 E-value=1.5e-10 Score=62.05 Aligned_cols=40 Identities=43% Similarity=0.512 Sum_probs=37.9
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeE-cCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGIN-LKLV 75 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~-L~d~ 75 (77)
.+++++++||.++|..|++..|+|+++|+|+|+|++ |+|.
T Consensus 24 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~ 64 (84)
T 2kk8_A 24 ELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILRED 64 (84)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSS
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCc
Confidence 578899999999999999999999999999999999 9875
No 48
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.13 E-value=6.7e-11 Score=64.23 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=37.1
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhh--CCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKE--GIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~--gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.+++++++||++||++|++.. |+|+++|+|+|.+ .+.++.++.++
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~ 70 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDL 70 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHH
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHH
Confidence 45667778888888888888887 8888888888875 55677777776
No 49
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.12 E-value=2.1e-10 Score=63.22 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=36.9
Q ss_pred EEEecCCccHHHHHHHH-hhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKI-QDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i-~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+++++++||.++|+.| ++..|+|+++|+|+|+|++|+|..
T Consensus 35 ~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~ 76 (98)
T 4a20_A 35 EHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNL 76 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTC
T ss_pred EEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcC
Confidence 44667999999999999 888899999999999999998863
No 50
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.12 E-value=1e-10 Score=61.35 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=37.1
Q ss_pred EEEE-eeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 3 LLLM-WKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 3 ~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+.++ |++++||++||.+|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 16 ~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~ 63 (78)
T 2faz_A 16 HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDY 63 (78)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTT
T ss_pred EEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHc
Confidence 3788 8888888888888888888888888888874 45667777766
No 51
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=1.2e-10 Score=61.27 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=36.3
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.+++++++||++||.+|++..|+|++.|+|+|.+ .++++.++.++
T Consensus 19 ~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~ 66 (81)
T 2dzi_A 19 ECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66 (81)
T ss_dssp EEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGG
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHc
Confidence 467788888888888888888888888888888864 45666677665
No 52
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.12 E-value=1e-10 Score=64.60 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=40.5
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCC-ccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSS-DTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~-~tv~~l 48 (77)
++.++|++++||++||++|++..|+|+++|+|+|.+ .+.++ .++.++
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~y 71 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSY 71 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHC
Confidence 678999999999999999999999999999999974 55555 578887
No 53
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.12 E-value=7.5e-11 Score=63.62 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=39.4
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEE-------EE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLIT-------TL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-------~~-~v~~~~tv~~l 48 (77)
.+.+.+++++||++||++|+..+||||++|+|+| .+ ..+++.++.++
T Consensus 16 ~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y 70 (86)
T 4b6w_A 16 VPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYY 70 (86)
T ss_dssp EEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGG
T ss_pred EEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHC
Confidence 3567899999999999999999999999999997 34 34677787776
No 54
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.3e-10 Score=63.73 Aligned_cols=47 Identities=45% Similarity=0.643 Sum_probs=34.3
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||++||.+|++..|+|++.|+|+|.+ .++++.++.++
T Consensus 34 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~ 81 (98)
T 4hcn_B 34 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 81 (98)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGG
T ss_pred EEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHC
Confidence 467777777778888877777777777777777764 45666666665
No 55
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.11 E-value=1.9e-10 Score=61.69 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=38.2
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+++++||.++|..|++..|+|+++|+|+|+|+.|+|..
T Consensus 31 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~ 71 (88)
T 4eew_A 31 TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDK 71 (88)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTS
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCC
Confidence 56788999999999999999999999999999999998853
No 56
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.11 E-value=1.9e-10 Score=59.68 Aligned_cols=47 Identities=47% Similarity=0.654 Sum_probs=39.6
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.+++++++||++||.+|++..|+|++.|+|+|.+ .++++.++.++
T Consensus 12 ~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~ 59 (76)
T 3a9j_A 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59 (76)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGG
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHc
Confidence 578889999999999999999999999999999875 55677777776
No 57
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.10 E-value=1.7e-10 Score=62.09 Aligned_cols=42 Identities=33% Similarity=0.760 Sum_probs=38.8
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
|.+.+++++||.++|..|++..|+|+++|+|+|+|+.|+|..
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~ 54 (88)
T 4fbj_B 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEK 54 (88)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTS
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCC
Confidence 467889999999999999999999999999999999998863
No 58
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.10 E-value=1.5e-10 Score=63.12 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=41.4
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhh---hCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDK---EGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~---~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++|++++||++||.+|++. +|+|+++|+|+|.+ .++++.++.++
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~y 62 (95)
T 1uel_A 11 QTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62 (95)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGG
T ss_pred CEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHC
Confidence 35789999999999999999998 88999999999985 56777788776
No 59
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.10 E-value=2.6e-10 Score=62.26 Aligned_cols=41 Identities=32% Similarity=0.472 Sum_probs=38.7
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.+.+++++||.++|..|++..|+|+++|+|+|+|++|+|.
T Consensus 27 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~ 67 (94)
T 2kan_A 27 FTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADD 67 (94)
T ss_dssp EEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCT
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCC
Confidence 56789999999999999999999999999999999999886
No 60
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.10 E-value=2.3e-10 Score=63.16 Aligned_cols=47 Identities=19% Similarity=0.139 Sum_probs=36.5
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||++||.+|++..|+|++.|+|+|.+ .++++.++.++
T Consensus 36 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~ 83 (101)
T 2klc_A 36 KEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQH 83 (101)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHc
Confidence 467788888888888888888888888888888864 45666777766
No 61
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.09 E-value=1.2e-10 Score=63.47 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=41.5
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++|++++||++||.+|++..|+|++.|+|+|.. .++++.++.++
T Consensus 27 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~ 75 (96)
T 1wx8_A 27 DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQR 75 (96)
T ss_dssp SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHC
Confidence 3578899999999999999999999999999999975 56778888887
No 62
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.09 E-value=2e-10 Score=62.40 Aligned_cols=48 Identities=46% Similarity=0.659 Sum_probs=41.9
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++|++++||++||.+|++..|+|++.|+|+|.+ .+.++.++.++
T Consensus 12 ~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~ 60 (96)
T 3k9o_B 12 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60 (96)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG
T ss_pred CEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHc
Confidence 3578999999999999999999999999999999975 56778888887
No 63
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.09 E-value=2.5e-10 Score=61.44 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=38.2
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+++++||.++|..|++..|+|+++|+|+|+|+.|+|..
T Consensus 19 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~ 59 (90)
T 4dwf_A 19 TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDK 59 (90)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTS
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCC
Confidence 56888999999999999999999999999999999998863
No 64
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.09 E-value=1.1e-10 Score=64.50 Aligned_cols=46 Identities=11% Similarity=0.123 Sum_probs=29.0
Q ss_pred EEEEeeCCCcHHHHHHHhhhh-hCCC-cccceEEEEE-EecCCccHHHH
Q 040720 3 LLLMWKAPTPLINVKAKIQDK-EGIP-PDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~-~gi~-~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++++|++++||++||++|++. .|+| +++|||+|.+ .+.++.++.++
T Consensus 38 i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y 86 (99)
T 2kdb_A 38 QTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDI 86 (99)
T ss_dssp EEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHH
Confidence 566667777777777777764 4554 3667777664 44566666655
No 65
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.07 E-value=5.5e-10 Score=61.57 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=39.5
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+.++|++++||++||.+|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 34 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y 80 (100)
T 1yqb_A 34 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC 80 (100)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHC
Confidence 57889999999999999999999999999999875 56778888887
No 66
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.07 E-value=1.4e-10 Score=65.37 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=40.7
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||++||.+|++..|+|++.|+|+|.+ .+.++.++.++
T Consensus 47 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y 94 (115)
T 1we7_A 47 GLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYY 94 (115)
T ss_dssp EEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHC
Confidence 578899999999999999999999999999999875 56778888887
No 67
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.07 E-value=8.9e-10 Score=58.77 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=37.7
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
.+.+++++||.++|..|++..|+|+++|+|+|+|+.|+|.
T Consensus 21 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~ 60 (87)
T 1wh3_A 21 AYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW 60 (87)
T ss_dssp EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSS
T ss_pred EEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCC
Confidence 5688999999999999999999999999999999999875
No 68
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.06 E-value=5.1e-11 Score=65.90 Aligned_cols=46 Identities=24% Similarity=0.337 Sum_probs=27.4
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+.++|++++||++||++|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 40 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 40 WEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 86 (101)
T ss_dssp CCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHC
Confidence 44556666666666666666666666666666653 34555555554
No 69
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.06 E-value=1.6e-10 Score=63.16 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=38.8
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEEEecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTLEVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~~v~~~~tv~~l 48 (77)
++.+++++++||.+||++|++..|+|+++|+|+|....-++.++.++
T Consensus 28 ~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd~tL~~~ 74 (95)
T 1v86_A 28 KHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDKTLREI 74 (95)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSSSBHHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCcCcHHHC
Confidence 57889999999999999999999999999999987533244477777
No 70
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.06 E-value=2.4e-10 Score=64.38 Aligned_cols=48 Identities=44% Similarity=0.639 Sum_probs=42.1
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++|++++||++||.+|++..|+|++.|+|+|.+ .++++.++.++
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y 68 (114)
T 2kdi_A 20 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDY 68 (114)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTT
T ss_pred cEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHC
Confidence 3678999999999999999999999999999999975 56777788776
No 71
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.06 E-value=6.7e-11 Score=67.89 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=39.9
Q ss_pred EEEeeCCCcHHHHHHHh-----hhhhCCCc--ccceEEEEE-EecCCccHHHHH
Q 040720 4 LLMWKAPTPLINVKAKI-----QDKEGIPP--DQQRLITTL-EVKSSDTINNVK 49 (77)
Q Consensus 4 ~~~v~~~~tv~~lK~~i-----~~~~gi~~--~~q~L~~~~-~v~~~~tv~~lK 49 (77)
++++++++||++||++| ++.+|+|+ ++|+|+|++ .+.++.|+++++
T Consensus 31 ~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~ 84 (126)
T 1se9_A 31 PKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYR 84 (126)
T ss_dssp EEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGS
T ss_pred eeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcC
Confidence 68999999999999999 56789986 899999986 568889999873
No 72
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.06 E-value=3.4e-10 Score=61.90 Aligned_cols=47 Identities=47% Similarity=0.654 Sum_probs=41.8
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||++||.+|++..|+|++.|+|+|.+ .+.++.++.++
T Consensus 12 ~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~ 59 (98)
T 1yx5_B 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59 (98)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGG
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHc
Confidence 578999999999999999999999999999999975 56778888877
No 73
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.05 E-value=3.5e-10 Score=59.47 Aligned_cols=42 Identities=19% Similarity=0.414 Sum_probs=38.7
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
+.+.++++++|..+|..++++.|+|+++|+|+|+|++|+|.-
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~ 57 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNH 57 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTC
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCC
Confidence 356888999999999999999999999999999999998864
No 74
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.05 E-value=9.1e-10 Score=62.37 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=36.6
Q ss_pred EEEecCCccHHHHHHHHhh------ccCC--CccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQD------KEGI--PPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~------~~gi--p~~~q~l~~~g~~L~d~~ 76 (77)
.+++++++||.++|+.|++ ++++ |+++|+|+|+|++|+|..
T Consensus 30 ~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~ 78 (116)
T 1wgh_A 30 EFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNV 78 (116)
T ss_dssp EEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSC
T ss_pred EEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCC
Confidence 5789999999999999999 5675 699999999999999863
No 75
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.05 E-value=4.7e-10 Score=60.84 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=37.9
Q ss_pred EEEEecCCccHHHHHHHHhhcc--CCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKE--GIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~--gip~~~q~l~~~g~~L~d~~ 76 (77)
+.+.+++++||.++|..|++.. ++|+++|+|+|+|+.|+|..
T Consensus 22 ~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~ 65 (93)
T 1wgd_A 22 LELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65 (93)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSS
T ss_pred EEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcC
Confidence 4556779999999999999998 99999999999999998863
No 76
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.05 E-value=3.2e-10 Score=63.06 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=38.9
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
|.+.+++++||.++|..|++..|+|+++|+|+|+|+.|+|..
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~ 55 (106)
T 3m62_B 14 VPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSK 55 (106)
T ss_dssp EEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTS
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcC
Confidence 467889999999999999999999999999999999998863
No 77
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.05 E-value=5.2e-10 Score=59.95 Aligned_cols=41 Identities=32% Similarity=0.441 Sum_probs=38.1
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
|.+.+++++||.++|..|++..|+|+++|+|+|+|+.|+|.
T Consensus 24 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~ 64 (85)
T 2kd0_A 24 IPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVET 64 (85)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTT
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCc
Confidence 35688999999999999999999999999999999999875
No 78
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.04 E-value=5.2e-10 Score=60.41 Aligned_cols=41 Identities=76% Similarity=0.986 Sum_probs=38.3
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+++++||.++|..|++..|+|+++|+|+|+|+.|+|..
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~ 71 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 71 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTC
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcC
Confidence 56889999999999999999999999999999999998863
No 79
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.04 E-value=4.8e-10 Score=62.53 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=37.2
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
.+++.+++||.++|++|++++|+|+++|||+|+|+.++|.
T Consensus 40 ~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~ 79 (105)
T 4dbg_A 40 WLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQ 79 (105)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTT
T ss_pred EEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCc
Confidence 5678899999999999999999999999999999998775
No 80
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.04 E-value=3.4e-10 Score=62.90 Aligned_cols=47 Identities=17% Similarity=0.355 Sum_probs=36.8
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|.+++||++||.+|++..|+|+++|+|+|.+ .+.++.++.++
T Consensus 35 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y 82 (106)
T 1ttn_A 35 DLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEEL 82 (106)
T ss_dssp EEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHC
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHc
Confidence 467888888888888888888888888888888875 45666677766
No 81
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.04 E-value=4.2e-10 Score=60.06 Aligned_cols=41 Identities=34% Similarity=0.784 Sum_probs=38.3
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+++++||.++|..|++..|+|+++|+|+|+|+.|+|..
T Consensus 26 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~ 66 (88)
T 3dbh_I 26 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEK 66 (88)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTS
T ss_pred EEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCC
Confidence 57889999999999999999999999999999999998853
No 82
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.04 E-value=5.6e-10 Score=58.46 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=38.1
Q ss_pred EEEE-ecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTLE-VKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~-v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.++ +++++||.++|..|++..|+|+++|+|+|+|++|+|.
T Consensus 16 ~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~ 57 (78)
T 2faz_A 16 HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDG 57 (78)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT
T ss_pred EEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCC
Confidence 3577 9999999999999999999999999999999999875
No 83
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.03 E-value=4.1e-10 Score=63.08 Aligned_cols=47 Identities=47% Similarity=0.654 Sum_probs=30.0
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|.+++||++||.+|++..|+|++.|+|+|.+ .+.++.++.++
T Consensus 47 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~ 94 (111)
T 3vdz_A 47 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 94 (111)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHC
Confidence 456666666777777777776667776667766653 44555555554
No 84
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.03 E-value=1.9e-10 Score=62.80 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=39.6
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-------Ee-cCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-------EV-KSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-------~v-~~~~tv~~l 48 (77)
.+.+++++++||++||++|+..+|+|+++|+|+|.. .+ +++.++.++
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y 74 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSY 74 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSS
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHC
Confidence 478899999999999999999999999999999974 23 566677665
No 85
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.03 E-value=1.8e-10 Score=67.63 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=43.9
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++++++|++++||++||.+|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 92 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y 140 (159)
T 3rt3_B 92 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY 140 (159)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHc
Confidence 4688999999999999999999999999999999985 66888898887
No 86
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.60 E-value=2.6e-11 Score=63.35 Aligned_cols=47 Identities=23% Similarity=0.394 Sum_probs=40.8
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.+++++++||++||.+|++..|+|++.|+|+|.+ .++++.++.++
T Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~ 59 (76)
T 3b1l_X 12 GFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNC 59 (76)
Confidence 567899999999999999999999999999999986 55677777776
No 87
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.03 E-value=7.9e-10 Score=57.58 Aligned_cols=41 Identities=34% Similarity=0.454 Sum_probs=38.3
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.+.+++++||.++|..|++..|+|++.|+|+|+|+.|+|.
T Consensus 16 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~ 56 (77)
T 2bwf_A 16 WEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD 56 (77)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCC
Confidence 46788999999999999999999999999999999999875
No 88
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.02 E-value=4.6e-10 Score=60.36 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=37.7
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
.+.+++++||.++|..|++..|+|+++|+|+|+|++|+|.
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~ 57 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ 57 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTT
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCC
Confidence 5688899999999999999999999999999999999875
No 89
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.02 E-value=6.2e-10 Score=60.99 Aligned_cols=41 Identities=80% Similarity=1.020 Sum_probs=38.3
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+++++||.++|..|++..|+|+++|+|+|+|+.|+|..
T Consensus 36 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~ 76 (98)
T 4hcn_B 36 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 76 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTC
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCC
Confidence 56889999999999999999999999999999999998863
No 90
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.01 E-value=6.8e-10 Score=58.83 Aligned_cols=42 Identities=71% Similarity=0.934 Sum_probs=38.8
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
+.+.+++++||.++|..|++..++|+++|+|+|+|+.|+|..
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~ 57 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 57 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCC
Confidence 467889999999999999999999999999999999998863
No 91
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.01 E-value=3.1e-11 Score=73.39 Aligned_cols=46 Identities=13% Similarity=0.254 Sum_probs=0.0
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTIN 46 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~ 46 (77)
++++++|++++||.+||.+|++.+|||+++|+|+|.+ .+.++.++.
T Consensus 11 ktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs 57 (189)
T 2xzm_9 11 ETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT 57 (189)
T ss_dssp -----------------------------------------------
T ss_pred CEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc
Confidence 3578999999999999999999999999999999986 556666665
No 92
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.01 E-value=7.8e-10 Score=60.14 Aligned_cols=42 Identities=31% Similarity=0.553 Sum_probs=38.7
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
+.+++++++||.++|..|++..|+|+++|+|+|+|++|+|..
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~ 71 (93)
T 2l7r_A 30 HTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEA 71 (93)
T ss_dssp EEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTS
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCC
Confidence 357889999999999999999999999999999999998753
No 93
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.00 E-value=7.5e-10 Score=63.33 Aligned_cols=47 Identities=19% Similarity=0.108 Sum_probs=38.9
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||.+||.+|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 43 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dy 90 (125)
T 1j8c_A 43 KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQH 90 (125)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGT
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHc
Confidence 577888888999999999999899999999998874 55677777776
No 94
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.00 E-value=2.3e-09 Score=57.93 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=38.2
Q ss_pred eEEEEeeCC-----CcHHHHHHHhhhhhCCCcccceEEEEE-EecC-CccHHHH
Q 040720 2 RLLLMWKAP-----TPLINVKAKIQDKEGIPPDQQRLITTL-EVKS-SDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~-----~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~-~~tv~~l 48 (77)
++.++++++ +||++||++|++..|+|+++|+|+|.+ .+.+ +.++.++
T Consensus 18 ~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~ 71 (92)
T 1wxv_A 18 KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSAL 71 (92)
T ss_dssp EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHH
T ss_pred EEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHC
Confidence 567888885 999999999999999999999999874 4555 4578777
No 95
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.00 E-value=8.2e-10 Score=59.41 Aligned_cols=41 Identities=68% Similarity=0.939 Sum_probs=38.1
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.+.+++++||.++|..|++..|+|++.|+|+|+|+.|+|.
T Consensus 22 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~ 62 (88)
T 1sif_A 22 FTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDG 62 (88)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCC
Confidence 35788999999999999999999999999999999999875
No 96
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.00 E-value=1e-09 Score=58.10 Aligned_cols=42 Identities=74% Similarity=0.958 Sum_probs=38.7
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
+.+.+++++||.++|..|++..++|++.|+|+|+|+.|+|..
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~ 57 (85)
T 3mtn_B 16 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 57 (85)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTS
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCC
Confidence 467889999999999999999999999999999999998863
No 97
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.00 E-value=2.8e-10 Score=68.00 Aligned_cols=48 Identities=44% Similarity=0.648 Sum_probs=42.9
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.++|++++||++||.+|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 11 k~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y 59 (169)
T 3l0w_B 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59 (169)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGG
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHc
Confidence 4688999999999999999999999999999999985 66788888887
No 98
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.00 E-value=7.6e-10 Score=61.07 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=35.7
Q ss_pred EEEecCCccHHHHHHHHhhc-cCCC-ccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDK-EGIP-PDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~-~gip-~~~q~l~~~g~~L~d~~ 76 (77)
.+.+++++||.++|+.|+++ .|+| +++|+|+|+|++|+|..
T Consensus 39 ~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~ 81 (99)
T 2kdb_A 39 TISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHL 81 (99)
T ss_dssp EEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTS
T ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCC
Confidence 56779999999999999986 5665 59999999999999863
No 99
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.99 E-value=3.2e-10 Score=62.13 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=36.2
Q ss_pred eE-EEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RL-LLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~-~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++ .+++++++||++||++|++.+|+|+++|+|+|.+ .+.++ ++.++
T Consensus 18 ~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~ 65 (96)
T 1wgg_A 18 KFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65 (96)
T ss_dssp EEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSC
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHC
Confidence 46 4888889999999999999999999999998874 44555 66655
No 100
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=98.99 E-value=8.9e-10 Score=60.33 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=38.3
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+.++++|..+|..|+++.|+|+++|+|+|+|++|+|.-
T Consensus 35 ~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~ 75 (97)
T 1wyw_B 35 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNH 75 (97)
T ss_dssp EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTC
T ss_pred EEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCC
Confidence 57889999999999999999999999999999999998863
No 101
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=1.4e-09 Score=57.12 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=38.0
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.+.+++++||.++|..|++..|+|++.|+|+|+|+.|+|.
T Consensus 20 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~ 60 (81)
T 2dzi_A 20 CSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADG 60 (81)
T ss_dssp EEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTT
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCC
Confidence 35688999999999999999999999999999999999875
No 102
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.99 E-value=9.2e-10 Score=60.75 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=38.1
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
|.+++++++||.++|..|++..|+|+++|+|+|+|++|+|.
T Consensus 24 ~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~ 64 (102)
T 1v5o_A 24 FSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDD 64 (102)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCS
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCC
Confidence 45788999999999999999999999999999999999875
No 103
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.99 E-value=3.2e-10 Score=69.00 Aligned_cols=48 Identities=46% Similarity=0.659 Sum_probs=42.4
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++++++|++++||.+||++|++.+|+|+++|+|+|.+ .++++.++.++
T Consensus 116 kt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dy 164 (189)
T 3q3f_A 116 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164 (189)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGG
T ss_pred CEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHC
Confidence 3688999999999999999999999999999999985 66788888887
No 104
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.99 E-value=1.3e-09 Score=56.48 Aligned_cols=41 Identities=34% Similarity=0.793 Sum_probs=38.1
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.+.+++++||.++|..|++..|+|++.|+|+|+|+.|+|.
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~ 53 (76)
T 1ndd_A 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE 53 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCC
Confidence 35688899999999999999999999999999999999875
No 105
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.98 E-value=5.5e-10 Score=62.46 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=35.8
Q ss_pred eEEEEeeC-CCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKA-PTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~-~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++ ++||++||.+|++..|+|++.|+|+|.+ .++++.++.++
T Consensus 42 ~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y 90 (111)
T 1we6_A 42 FMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHY 90 (111)
T ss_dssp CEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTT
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHC
Confidence 46778887 8888888888888888888888888765 44566666665
No 106
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.98 E-value=2e-09 Score=59.70 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=39.2
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+.++|++++||.+||.+|++..|+|++.|+|+|.+ .+.++.++.++
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~ 75 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC 75 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHc
Confidence 57888999999999999999999999999998875 56777888887
No 107
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.97 E-value=8.1e-10 Score=60.50 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=37.6
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
.+++++++||.++|..|++..|+|+++|+|+|+|++|+|.
T Consensus 21 ~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~ 60 (96)
T 1wgg_A 21 GVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD 60 (96)
T ss_dssp EEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC
Confidence 4788999999999999999999999999999999999875
No 108
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.97 E-value=1.4e-09 Score=59.01 Aligned_cols=42 Identities=74% Similarity=0.958 Sum_probs=38.8
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
|.+.+++++||.++|..|++..|+|++.|+|+|+|+.|+|..
T Consensus 14 ~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~ 55 (96)
T 3k9o_B 14 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 55 (96)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTS
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCC
Confidence 467889999999999999999999999999999999998863
No 109
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=98.97 E-value=1.9e-09 Score=57.17 Aligned_cols=41 Identities=27% Similarity=0.450 Sum_probs=37.6
Q ss_pred EEEEecCCccHHHHHHHHhhc---cCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDK---EGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~---~gip~~~q~l~~~g~~L~d~ 75 (77)
|.+.+++++||.++|..|++. .|+|+++|+|+|+|+.|+|.
T Consensus 18 ~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~ 61 (85)
T 2wyq_A 18 FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD 61 (85)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTT
T ss_pred EEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCC
Confidence 357889999999999999998 89999999999999999875
No 110
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.96 E-value=1.7e-09 Score=59.62 Aligned_cols=42 Identities=29% Similarity=0.305 Sum_probs=38.6
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
+.+.+++++||.++|..|++..|+|++.|+|+|+|+.|+|..
T Consensus 37 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~ 78 (101)
T 2klc_A 37 EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQD 78 (101)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcC
Confidence 457889999999999999999999999999999999998753
No 111
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.96 E-value=2.3e-09 Score=57.43 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=38.0
Q ss_pred EEE-EecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTL-EVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~-~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
|.+ ++++++||.++|..|++..|+|+++|+|+|+|+.|+|.
T Consensus 21 ~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~ 62 (89)
T 1wy8_A 21 CTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENG 62 (89)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSS
T ss_pred EEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCC
Confidence 467 58999999999999999999999999999999999875
No 112
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.96 E-value=1.5e-09 Score=59.83 Aligned_cols=40 Identities=38% Similarity=0.431 Sum_probs=37.8
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
.+++++++||.++|..|++..|+|+++|+|+|+|+.|+|.
T Consensus 35 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~ 74 (100)
T 1yqb_A 35 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP 74 (100)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCc
Confidence 5788999999999999999999999999999999999875
No 113
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.95 E-value=7.3e-11 Score=67.63 Aligned_cols=47 Identities=45% Similarity=0.643 Sum_probs=0.0
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||++||.+|++..|+|++.|+|+|.+ .++++.++.++
T Consensus 12 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~ 59 (128)
T 3u5e_m 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59 (128)
T ss_dssp ------------------------------------------------
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhh
Confidence 578999999999999999999999999999999986 56778888877
No 114
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.95 E-value=2.2e-09 Score=58.48 Aligned_cols=41 Identities=27% Similarity=0.500 Sum_probs=37.9
Q ss_pred EEEEecCCccHHHHHHHHhhc---cCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDK---EGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~---~gip~~~q~l~~~g~~L~d~ 75 (77)
|.+.+++++||.++|..|++. .|+|+++|+|+|+|+.|+|.
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~ 56 (95)
T 1uel_A 13 FKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDD 56 (95)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTT
T ss_pred EEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCc
Confidence 467889999999999999999 78999999999999999875
No 115
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.95 E-value=2e-09 Score=60.26 Aligned_cols=41 Identities=76% Similarity=0.986 Sum_probs=38.2
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+++++||.++|..|+...|+|+++|+|+|+|+.|+|..
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~ 89 (111)
T 3vdz_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 89 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTS
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCC
Confidence 56889999999999999999999999999999999998853
No 116
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.94 E-value=1.1e-09 Score=62.29 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=40.3
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-------Ee-cCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-------EV-KSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-------~v-~~~~tv~~l 48 (77)
.+.+++++++||++||.+|+...|||+++|+|+|.. .+ +++.++.++
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y 73 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 73 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTT
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHC
Confidence 478899999999999999999999999999999965 23 566677776
No 117
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.94 E-value=2.3e-09 Score=55.45 Aligned_cols=41 Identities=76% Similarity=0.998 Sum_probs=38.0
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.+.+++++||.++|..|++..|+|++.|+|+|+|+.|+|.
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~ 53 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCC
Confidence 35688899999999999999999999999999999999875
No 118
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.94 E-value=1.7e-09 Score=62.03 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=36.1
Q ss_pred EEEecCCccHHHHHHHH-----hhccCCCc--cceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKI-----QDKEGIPP--DQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i-----~~~~gip~--~~q~l~~~g~~L~d~~ 76 (77)
.+.+++++||.++|+.| ++.+|+|+ ++|+|+|+|++|+|.-
T Consensus 31 ~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~ 78 (126)
T 1se9_A 31 PKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSK 78 (126)
T ss_dssp EEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTS
T ss_pred eeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCC
Confidence 46788999999999999 66788986 8999999999999863
No 119
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=98.94 E-value=1.3e-09 Score=62.42 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=37.0
Q ss_pred EEEecCCccHHHHHHHHhh------ccCC--CccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQD------KEGI--PPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~------~~gi--p~~~q~l~~~g~~L~d~~ 76 (77)
.+.+++++||.++|+.|++ ++|+ |+++|+|+|+|++|+|.-
T Consensus 31 ~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~ 79 (125)
T 2gow_A 31 EFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNV 79 (125)
T ss_dssp EEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSC
T ss_pred EEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCC
Confidence 6789999999999999999 7788 489999999999999863
No 120
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.93 E-value=1.8e-09 Score=60.34 Aligned_cols=47 Identities=47% Similarity=0.654 Sum_probs=31.4
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||++||.+|++..|+|++.|+|+|.. .+.++.++.++
T Consensus 47 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~ 94 (111)
T 2ojr_A 47 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 94 (111)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHc
Confidence 456677777777777777777777777777777653 44555566555
No 121
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=8.8e-10 Score=62.43 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=33.9
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++++++++.||++||+++++..++|++.|+|+|.+ -+.+++|+.++
T Consensus 29 ~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~ 75 (118)
T 2daf_A 29 IVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQH 75 (118)
T ss_dssp EEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHc
Confidence 56777777777777777777777777777777775 45677777776
No 122
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=98.93 E-value=1.7e-09 Score=58.44 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=38.1
Q ss_pred EEE-EecCCccHHHHHHHHhhccCCCccceEEE---ECCeEcCcc
Q 040720 35 TTL-EVKSSDTINNVKSKIQDKEGIPPDQQRLI---FAGINLKLV 75 (77)
Q Consensus 35 ~~~-~v~~~~tv~~lK~~i~~~~gip~~~q~l~---~~g~~L~d~ 75 (77)
|.+ ++++++||.++|..|++..|+|+++|+|+ |+|++|+|.
T Consensus 19 ~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~ 63 (90)
T 1v5t_A 19 YSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEND 63 (90)
T ss_dssp EEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCC
Confidence 357 88999999999999999999999999999 999999875
No 123
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.92 E-value=2e-09 Score=58.58 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=38.1
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+++++||.++|..|+...|+|+++|+|+|+|+.|+|..
T Consensus 30 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~ 70 (96)
T 1wx8_A 30 EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQD 70 (96)
T ss_dssp EEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTS
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcC
Confidence 56888999999999999999999999999999999998863
No 124
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=98.92 E-value=2.7e-09 Score=60.06 Aligned_cols=40 Identities=80% Similarity=1.034 Sum_probs=37.8
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
.+.+++++||.++|..|++..|+|+++|+|+|+|+.|+|.
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~ 62 (114)
T 2kdi_A 23 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDG 62 (114)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCC
Confidence 5788999999999999999999999999999999999875
No 125
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.92 E-value=1.2e-10 Score=68.68 Aligned_cols=47 Identities=45% Similarity=0.643 Sum_probs=0.0
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||++||++|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dy 59 (152)
T 3u5c_f 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59 (152)
T ss_dssp ------------------------------------------------
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHc
Confidence 578899999999999999999999999999999986 56778888877
No 126
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.91 E-value=8.6e-10 Score=60.91 Aligned_cols=41 Identities=34% Similarity=0.470 Sum_probs=37.8
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+++++||.++|..|++..|+|+++|+|+|+|+.|+|..
T Consensus 41 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~ 81 (101)
T 3m63_B 41 EVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQ 81 (101)
T ss_dssp CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTS
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcC
Confidence 45788999999999999999999999999999999998863
No 127
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.91 E-value=7.7e-10 Score=65.83 Aligned_cols=48 Identities=46% Similarity=0.659 Sum_probs=43.8
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++++++|++++||.+||.+|+..+|+|+++|+|+|.+ .++++.++.++
T Consensus 107 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y 155 (172)
T 3u30_A 107 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 155 (172)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGG
T ss_pred cceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHh
Confidence 4688999999999999999999999999999999985 67888888887
No 128
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.91 E-value=3e-09 Score=59.84 Aligned_cols=41 Identities=27% Similarity=0.515 Sum_probs=38.4
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.+.+++++||.++|..|+...|+|+++|+|+|+|+.|+|.
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~ 88 (115)
T 1we7_A 48 LVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDS 88 (115)
T ss_dssp EEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTT
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCC
Confidence 46788999999999999999999999999999999999875
No 129
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.91 E-value=3.6e-09 Score=57.77 Aligned_cols=41 Identities=76% Similarity=0.998 Sum_probs=38.2
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.+.+++++||.++|..|++..|+|++.|+|+|+|+.|+|.
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~ 53 (98)
T 1yx5_B 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTT
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCC
Confidence 36788999999999999999999999999999999999875
No 130
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.90 E-value=3.6e-09 Score=58.73 Aligned_cols=40 Identities=35% Similarity=0.577 Sum_probs=37.6
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
.+.+++++||.++|..|+...|+|+++|+|+|+|+.|+|.
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~ 76 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDK 76 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTT
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCC
Confidence 4688999999999999999999999999999999999875
No 131
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.90 E-value=4.7e-09 Score=60.00 Aligned_cols=42 Identities=29% Similarity=0.299 Sum_probs=38.6
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
|.+.+++++||.+||..|+...|+|+++|+|+|+|+.|+|..
T Consensus 44 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~ 85 (125)
T 1j8c_A 44 EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQD 85 (125)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTS
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCC
Confidence 357889999999999999999999999999999999998763
No 132
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.90 E-value=4.5e-09 Score=56.77 Aligned_cols=39 Identities=31% Similarity=0.543 Sum_probs=35.9
Q ss_pred EEEecCC-----ccHHHHHHHHhhccCCCccceEEEECCeEcCc
Q 040720 36 TLEVKSS-----DTINNVKSKIQDKEGIPPDQQRLIFAGINLKL 74 (77)
Q Consensus 36 ~~~v~~~-----~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d 74 (77)
.+.++++ .||.+||..|++..|+|+++|+|+|+|+.|+|
T Consensus 20 ~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D 63 (92)
T 1wxv_A 20 DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKE 63 (92)
T ss_dssp EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECC
T ss_pred EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCC
Confidence 5677774 99999999999999999999999999999987
No 133
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.89 E-value=1.1e-09 Score=61.07 Aligned_cols=48 Identities=8% Similarity=0.169 Sum_probs=39.8
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcc---------------cceEEEEE-Ee-cCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPD---------------QQRLITTL-EV-KSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~---------------~q~L~~~~-~v-~~~~tv~~l 48 (77)
++++++|++++||++||++|++..|+|+. +|+|+|.+ .+ +++.++.++
T Consensus 18 ~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dy 82 (105)
T 1v2y_A 18 EVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY 82 (105)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHc
Confidence 46899999999999999999999999884 45888875 44 456788887
No 134
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.89 E-value=4.7e-09 Score=58.16 Aligned_cols=41 Identities=37% Similarity=0.397 Sum_probs=38.2
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.++.++||.+||..|++..|+|+++|+|+|+|+.|+|..
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~ 70 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPD 70 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTS
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcC
Confidence 57888999999999999999999999999999999998863
No 135
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=3.5e-09 Score=59.96 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=38.9
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
+.+.++++.+|.+||..++...++|+++|+|+|+|+.|.|.-
T Consensus 29 ~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~e 70 (118)
T 2daf_A 29 IVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNE 70 (118)
T ss_dssp EEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSC
T ss_pred EEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcc
Confidence 367789999999999999999999999999999999998864
No 136
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.88 E-value=4e-09 Score=62.98 Aligned_cols=42 Identities=79% Similarity=0.991 Sum_probs=38.9
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
+.+.+++++||.++|..|++..|+|+++|+|+|+|++|+|..
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~ 54 (169)
T 3l0w_B 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 54 (169)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcC
Confidence 357889999999999999999999999999999999998863
No 137
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.87 E-value=4.8e-09 Score=60.67 Aligned_cols=48 Identities=46% Similarity=0.659 Sum_probs=43.2
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+++.+++++++||++||.+|++..|+|++.|+|+|.+ .++++.++.++
T Consensus 87 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~ 135 (152)
T 3b08_A 87 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 135 (152)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHc
Confidence 3678999999999999999999999999999999985 66788888877
No 138
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.86 E-value=1.7e-09 Score=59.06 Aligned_cols=40 Identities=25% Similarity=0.467 Sum_probs=37.1
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKL 74 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d 74 (77)
|.+.++++.||.+||..|++..|+|+++|+|+|+|++|+|
T Consensus 29 ~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd 68 (95)
T 1v86_A 29 HDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED 68 (95)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc
Confidence 3578899999999999999999999999999999999955
No 139
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.84 E-value=4.5e-09 Score=58.69 Aligned_cols=41 Identities=29% Similarity=0.328 Sum_probs=37.9
Q ss_pred EEEEecC-CccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKS-SDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~-~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.+.+++ ++||.++|..|+...|+|+++|+|+|+|+.|+|.
T Consensus 43 ~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~ 84 (111)
T 1we6_A 43 MEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDN 84 (111)
T ss_dssp EEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCC
Confidence 3578887 9999999999999999999999999999999875
No 140
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.84 E-value=3.7e-09 Score=58.77 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=39.4
Q ss_pred eEEEE--------eeCC-CcHHHHHHHhhhhh--CCCccc-ceEEEEE-EecCCccHHHH
Q 040720 2 RLLLM--------WKAP-TPLINVKAKIQDKE--GIPPDQ-QRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~--------v~~~-~tv~~lK~~i~~~~--gi~~~~-q~L~~~~-~v~~~~tv~~l 48 (77)
++.++ |+++ +||++||++|++.. |+|++. |+|+|.+ .+.++.++.++
T Consensus 27 ~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y 86 (107)
T 1x1m_A 27 KSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFY 86 (107)
T ss_dssp CEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHH
T ss_pred EEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHc
Confidence 46677 4454 99999999999999 999999 9999975 56788888888
No 141
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.83 E-value=3.8e-10 Score=68.59 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=0.0
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.+++++++||.++|..|+..+|+|+++|+|+|+|++|+|.
T Consensus 13 itLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~ 53 (189)
T 2xzm_9 13 KIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNT 53 (189)
T ss_dssp -----------------------------------------
T ss_pred EEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCC
Confidence 35788899999999999999999999999999999999985
No 142
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=5.4e-10 Score=60.43 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=32.0
Q ss_pred EE-EeeCCCcHHHHHHHhhhh-hCCCcccceEEEE--E-EecCCccHHHH
Q 040720 4 LL-MWKAPTPLINVKAKIQDK-EGIPPDQQRLITT--L-EVKSSDTINNV 48 (77)
Q Consensus 4 ~~-~v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~~--~-~v~~~~tv~~l 48 (77)
.+ +|+|++||++||++|++. .|+|+++|+|+|. + .+.++.++.++
T Consensus 26 ~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y 75 (88)
T 2dzj_A 26 FLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKL 75 (88)
T ss_dssp EEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTS
T ss_pred EEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHc
Confidence 46 788888888888888873 7888888888764 3 34556666665
No 143
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.81 E-value=5.7e-09 Score=56.16 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=36.0
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEE-------CCeEcCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIF-------AGINLKLV 75 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-------~g~~L~d~ 75 (77)
...+++++||.++|.+|+..+|+|+++|+|+| .|+.|+|.
T Consensus 18 E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~ 64 (86)
T 4b6w_A 18 EKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMAND 64 (86)
T ss_dssp EEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTT
T ss_pred EEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCC
Confidence 56789999999999999999999999999996 57778775
No 144
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.81 E-value=1.3e-08 Score=56.80 Aligned_cols=40 Identities=78% Similarity=1.027 Sum_probs=37.5
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
.+.+++++||.++|..|++..|+|++.|+|+|+|+.|+|.
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~ 88 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 88 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSS
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCC
Confidence 5678899999999999999999999999999999999875
No 145
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.80 E-value=7.3e-09 Score=62.97 Aligned_cols=41 Identities=76% Similarity=0.986 Sum_probs=38.3
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+++++||.++|..|++..|+|+++|+|+|+|++|+|..
T Consensus 119 ~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~ 159 (189)
T 3q3f_A 119 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 159 (189)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTC
T ss_pred EEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCC
Confidence 57889999999999999999999999999999999998853
No 146
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.26 E-value=7.2e-10 Score=57.72 Aligned_cols=40 Identities=38% Similarity=0.605 Sum_probs=37.2
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
.+.+++++||.++|..|++..|+|++.|+|+|+|+.|+|.
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~ 53 (76)
T 3b1l_X 14 PVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNH 53 (76)
Confidence 5678899999999999999999999999999999999875
No 147
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.77 E-value=3.5e-09 Score=68.73 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=41.2
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEE---EEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLI---TTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~---~~~-~v~~~~tv~~l 48 (77)
++++++++++||++||++|++.+|||+++|+|+ |.+ .+.++.++.++
T Consensus 16 ~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~ 66 (320)
T 3shq_A 16 EYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISAL 66 (320)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSS
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHc
Confidence 588999999999999999999999999999999 665 55677777776
No 148
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.76 E-value=1.7e-08 Score=56.08 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=34.1
Q ss_pred ecC-CccHHHHHHHHhhcc--CCCccc-eEEEECCeEcCccc
Q 040720 39 VKS-SDTINNVKSKIQDKE--GIPPDQ-QRLIFAGINLKLVV 76 (77)
Q Consensus 39 v~~-~~tv~~lK~~i~~~~--gip~~~-q~l~~~g~~L~d~~ 76 (77)
+++ ++||.++|..|+... |+|+++ |+|+|+|+.|+|..
T Consensus 40 v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~ 81 (107)
T 1x1m_A 40 YSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQ 81 (107)
T ss_dssp SCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTC
T ss_pred cCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCC
Confidence 444 499999999999999 999999 99999999998863
No 149
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.74 E-value=2.4e-08 Score=54.62 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=36.0
Q ss_pred EEEEEecCCccHHHHHHHHhhccCCCccceEEEEC--Ce---Ec-Ccc
Q 040720 34 ITTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFA--GI---NL-KLV 75 (77)
Q Consensus 34 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~--g~---~L-~d~ 75 (77)
.+.+.+++++||.++|.+|+..+|+|+++|+|+|+ |+ +| +|.
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~ 76 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNND 76 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTT
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCC
Confidence 34678899999999999999999999999999997 55 45 554
No 150
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.74 E-value=1.9e-08 Score=55.27 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=33.5
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCe
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGI 70 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~ 70 (77)
+...+++++||.++|.+|+..+|+|+++|+|+|.|+
T Consensus 29 ~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~ 64 (97)
T 2kj6_A 29 ADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDD 64 (97)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECS
T ss_pred EEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecC
Confidence 467899999999999999999999999999999884
No 151
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.72 E-value=1.3e-09 Score=62.33 Aligned_cols=42 Identities=79% Similarity=0.991 Sum_probs=0.0
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
|.+.+++++||.++|..|++..|+|+++|+|+|+|+.|+|..
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~ 54 (128)
T 3u5e_m 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 54 (128)
T ss_dssp ------------------------------------------
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCC
Confidence 356788999999999999999999999999999999998863
No 152
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.72 E-value=9.4e-09 Score=66.48 Aligned_cols=47 Identities=47% Similarity=0.654 Sum_probs=35.0
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||++||++|++..|+|+++|+|+|.+ .++++.++.++
T Consensus 245 ~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdy 292 (307)
T 3ai5_A 245 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 292 (307)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGG
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHc
Confidence 467778888888888888888888888888887764 45666666665
No 153
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=1.7e-08 Score=55.75 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=34.7
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEE--CCeEcCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIF--AGINLKLV 75 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~--~g~~L~d~ 75 (77)
.+.+++++||.++|.+|++++|||+++|+|+| +|+ |+|.
T Consensus 22 ~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~ 62 (100)
T 2dzm_A 22 DVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDS 62 (100)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTT
T ss_pred EEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCc
Confidence 56789999999999999999999999999986 666 7764
No 154
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=2.1e-08 Score=54.10 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=36.7
Q ss_pred EEE-EecCCccHHHHHHHHhh-ccCCCccceEEEEC--CeEcCcc
Q 040720 35 TTL-EVKSSDTINNVKSKIQD-KEGIPPDQQRLIFA--GINLKLV 75 (77)
Q Consensus 35 ~~~-~v~~~~tv~~lK~~i~~-~~gip~~~q~l~~~--g~~L~d~ 75 (77)
+.+ ++++++||.++|+.|++ ..|+|+++|+|+|. |++|+|.
T Consensus 25 ~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~ 69 (88)
T 2dzj_A 25 CFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDE 69 (88)
T ss_dssp EEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTT
T ss_pred eEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCC
Confidence 457 89999999999999999 48999999999976 9999775
No 155
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.69 E-value=8.7e-09 Score=57.40 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=35.1
Q ss_pred EEEecCCccHHHHHHHHhhccCCCc---------------cceEEEECCeEcCc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPP---------------DQQRLIFAGINLKL 74 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~---------------~~q~l~~~g~~L~d 74 (77)
.+.+++++||.+||+.|++++++|+ ++|+|+|+|++|.|
T Consensus 21 ~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~d 74 (105)
T 1v2y_A 21 PVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTE 74 (105)
T ss_dssp EEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECC
T ss_pred EEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccC
Confidence 6789999999999999999999987 46799999999964
No 156
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.68 E-value=4.9e-08 Score=53.34 Aligned_cols=34 Identities=12% Similarity=0.045 Sum_probs=23.2
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEE
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITT 36 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 36 (77)
+.+.+.+.+|+..+|++|++.+|||+++|+|+|.
T Consensus 26 h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~e 59 (94)
T 4efo_A 26 HKIYIHSYNTATIFHELVYKQTKIISSNQELIYE 59 (94)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 5566667777777777777777777777777664
No 157
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.68 E-value=2.2e-09 Score=63.29 Aligned_cols=42 Identities=79% Similarity=0.991 Sum_probs=0.0
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
+.+.+++++||.++|..|++..|+|+++|+|+|+|++|+|..
T Consensus 13 ~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~ 54 (152)
T 3u5c_f 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 54 (152)
T ss_dssp ------------------------------------------
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccC
Confidence 356788999999999999999999999999999999998863
No 158
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.67 E-value=4.5e-08 Score=53.51 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=36.3
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcC
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLK 73 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~ 73 (77)
+.+.+.+++++..+|..|++++|||+++|+|+|+|+.|.
T Consensus 26 h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 26 HKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred EEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 467888999999999999999999999999999998875
No 159
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.65 E-value=6.4e-09 Score=57.88 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=31.5
Q ss_pred EEEEee-CCCcHHHHHHHhhhhhCCCcccceEEEEE
Q 040720 3 LLLMWK-APTPLINVKAKIQDKEGIPPDQQRLITTL 37 (77)
Q Consensus 3 ~~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~L~~~~ 37 (77)
..++|+ +++||.+||++|++..|+|++.|+|+|..
T Consensus 19 ~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~ 54 (107)
T 1wf9_A 19 ERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNR 54 (107)
T ss_dssp EEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSG
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECC
Confidence 468899 99999999999999999999999998754
No 160
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.59 E-value=8.4e-09 Score=68.10 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=39.9
Q ss_pred eEEEEeeCCCcHHHHHHHhhh---hhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQD---KEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~---~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
++.++|++++||.+||.+|++ ++|||+++|+|+|.+ .+.++.++.++
T Consensus 19 ~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dy 69 (368)
T 1oqy_A 19 TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 69 (368)
T ss_dssp EEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTT
T ss_pred EEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHc
Confidence 578899999999999999998 677999999999986 56777788776
No 161
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.57 E-value=7.4e-08 Score=52.38 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=33.5
Q ss_pred EEEEEecCCccHHHHHHHHhhccCCCccceEEEECC
Q 040720 34 ITTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAG 69 (77)
Q Consensus 34 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 69 (77)
.+.+.+++++||.++|.+|+..+|+|+++|+|+|.|
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~ 55 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYG 55 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEEC
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeC
Confidence 356789999999999999999999999999999986
No 162
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.55 E-value=6.1e-08 Score=52.51 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=28.6
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCC-ccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSS-DTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~-~tv~~l 48 (77)
++.++|++++||++||.+|++.. +++|+|+|.+ .+.++ .++.++
T Consensus 19 ~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y 64 (95)
T 1wia_A 19 EELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSL 64 (95)
T ss_dssp EEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTT
T ss_pred EEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHc
Confidence 35667777777777777777665 5677777764 44555 566555
No 163
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.54 E-value=1.5e-07 Score=60.87 Aligned_cols=40 Identities=78% Similarity=1.027 Sum_probs=37.8
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
.+.+++++||.++|..|++..|+|+++|+|+|+|++|+|.
T Consensus 247 ~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~ 286 (307)
T 3ai5_A 247 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 286 (307)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCC
Confidence 5788999999999999999999999999999999999875
No 164
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.53 E-value=2e-07 Score=50.46 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=34.7
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.+.++++++|.++|..|+... +++|+|+|+|+.|+|.
T Consensus 20 ~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~ 57 (95)
T 1wia_A 20 ELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDP 57 (95)
T ss_dssp EEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCS
T ss_pred EEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCC
Confidence 3578899999999999999998 8999999999999876
No 165
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.47 E-value=1.1e-07 Score=51.93 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=38.8
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
.+.++|.+++++..|+++++++.|+|+++++|+|.+ .+.++.|+.++
T Consensus 19 ~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl 66 (94)
T 2io1_B 19 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 66 (94)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTT
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc
Confidence 467888888888888888888888888888888874 67788888777
No 166
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.46 E-value=1.7e-07 Score=61.85 Aligned_cols=41 Identities=27% Similarity=0.462 Sum_probs=37.3
Q ss_pred EEEEecCCccHHHHHHHHhh---ccCCCccceEEEECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQD---KEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~---~~gip~~~q~l~~~g~~L~d~ 75 (77)
|.+.++.++||.++|..|+. +.|+|+++|+|+|+|+.|+|.
T Consensus 20 ~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~ 63 (368)
T 1oqy_A 20 FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD 63 (368)
T ss_dssp EEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSS
T ss_pred EEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCc
Confidence 35788999999999999999 678999999999999999875
No 167
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.46 E-value=1e-07 Score=61.90 Aligned_cols=41 Identities=20% Similarity=0.417 Sum_probs=38.4
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEE---ECCeEcCcc
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLI---FAGINLKLV 75 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~---~~g~~L~d~ 75 (77)
|.+.+++++||.++|+.|++.+|+|+++|+|+ |+|++|+|.
T Consensus 17 ~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~ 60 (320)
T 3shq_A 17 YPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADN 60 (320)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTT
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCcc
Confidence 46789999999999999999999999999999 899999885
No 168
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.44 E-value=2.3e-07 Score=49.51 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=36.4
Q ss_pred EEE-eeCCCcHHHHHHHhhhhhCCCcccceEEEEE---Ee--c-CCccHHHH
Q 040720 4 LLM-WKAPTPLINVKAKIQDKEGIPPDQQRLITTL---EV--K-SSDTINNV 48 (77)
Q Consensus 4 ~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~---~v--~-~~~tv~~l 48 (77)
.++ +++++||++||++|++..|+|++.|+|+|.+ .+ . ++.++.++
T Consensus 13 ~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~ 64 (86)
T 2kzr_A 13 LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDL 64 (86)
T ss_dssp EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTS
T ss_pred EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHc
Confidence 466 8999999999999999999999999999853 12 2 45566666
No 169
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.43 E-value=3.9e-07 Score=51.67 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=33.2
Q ss_pred EEEEEecCCccHHHHHHHHhhccCCCccceEEEECC
Q 040720 34 ITTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAG 69 (77)
Q Consensus 34 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 69 (77)
.+...+++++||.++|.+|+...|+|+++|+|+|.|
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g 54 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFD 54 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEEC
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEec
Confidence 356788999999999999999999999999999987
No 170
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.41 E-value=1.9e-06 Score=45.41 Aligned_cols=47 Identities=9% Similarity=0.164 Sum_probs=39.3
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
.+.+.|.+++++..|+.++++..|+++++++|+|.+ .+.++.|+.++
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l 67 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADL 67 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc
Confidence 467888888888888888888888888888888875 77888888887
No 171
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.40 E-value=2.1e-07 Score=48.30 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=32.8
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
.+.+.|.++++++.|+.++++..|+|+..++|+|.+ .+.++.|+.++
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l 60 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 60 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHc
Confidence 356677777777777777777777777777777764 56666666665
No 172
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.39 E-value=6.2e-07 Score=48.79 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=37.4
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEE-------E-Ee-cCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITT-------L-EV-KSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-------~-~v-~~~~tv~~l 48 (77)
.+.+.+.++.||++||.+|+...|+|+..|+|+|. . .+ ++..++..+
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y 79 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFY 79 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhc
Confidence 35677889999999999999999999999999886 1 23 455566665
No 173
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.32 E-value=3.9e-07 Score=49.42 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=36.9
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
.+.+.|.+++++..|+..+++..|+|+.+++|+|.+ .+.+++|+.++
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl 64 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 64 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc
Confidence 466778888888888888888888888888888874 67777777776
No 174
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.24 E-value=2.3e-06 Score=46.59 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=37.9
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+..++++..++..++++.|+|+++++|+|+|+.|++.-
T Consensus 21 ~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~ 61 (94)
T 2io1_B 21 QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD 61 (94)
T ss_dssp EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTC
T ss_pred EEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCC
Confidence 46788999999999999999999999999999999998764
No 175
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.22 E-value=1.3e-06 Score=48.85 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=37.1
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
.+.+.|.+++++..|+..+++..|+|+++++|+|.+ .+.++.|+.++
T Consensus 38 ~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl 85 (110)
T 2k8h_A 38 EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEEL 85 (110)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc
Confidence 356778888888888888888888888888888875 67777788777
No 176
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.20 E-value=1.2e-06 Score=47.52 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=18.9
Q ss_pred EEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCc
Q 040720 37 LEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKL 74 (77)
Q Consensus 37 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d 74 (77)
+.+..++++..++..++++.|+++++++|+|+|+.|.+
T Consensus 32 ~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~ 69 (93)
T 2d07_B 32 FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE 69 (93)
T ss_dssp EEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred EEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCC
Confidence 34444445555555555555555555555555555443
No 177
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.19 E-value=3.8e-06 Score=43.41 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=37.8
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+..++++..++...+++.|+|+++++++|+|+.|++.-
T Consensus 15 ~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~ 55 (72)
T 1wm3_A 15 QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD 55 (72)
T ss_dssp EEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTC
T ss_pred EEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCC
Confidence 56788999999999999999999999999999999998764
No 178
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.14 E-value=7.2e-06 Score=43.14 Aligned_cols=41 Identities=12% Similarity=0.271 Sum_probs=37.6
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+..++++..++...+++.|+++++++++|+|+.|.+.-
T Consensus 22 ~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~ 62 (79)
T 3a4r_A 22 EISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKE 62 (79)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCC
T ss_pred EEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCC
Confidence 46788999999999999999999999999999999998764
No 179
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.11 E-value=7.3e-06 Score=44.34 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=37.7
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+..++++..++...+++.|+|+++++++|+|+.|++.-
T Consensus 19 ~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~ 59 (91)
T 2io0_B 19 QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD 59 (91)
T ss_dssp EEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTC
T ss_pred EEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCC
Confidence 56788999999999999999999999999999999998764
No 180
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.07 E-value=1.7e-06 Score=47.98 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=26.2
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+.+.|.+++++..|+.++++..|+++..++|+|.+ .+.++.|+.++
T Consensus 37 i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl 83 (104)
T 1wz0_A 37 VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 83 (104)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTT
T ss_pred EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHc
Confidence 44555556666666666666666665555665554 44555555554
No 181
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.06 E-value=2.9e-06 Score=47.23 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=29.8
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
.+.+.|.+++++..|+..+++..|+++..++|+|.+ .+.++.|..++
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl 89 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 89 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHc
Confidence 345666666666666666666666666666666653 55666666555
No 182
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.05 E-value=1.6e-06 Score=48.02 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=32.6
Q ss_pred EEEec-CCccHHHHHHHHhhccCCCccceEEEECCe
Q 040720 36 TLEVK-SSDTINNVKSKIQDKEGIPPDQQRLIFAGI 70 (77)
Q Consensus 36 ~~~v~-~~~tv~~lK~~i~~~~gip~~~q~l~~~g~ 70 (77)
.++++ +++||.+||.+|++..|+|+++|+|+|.|+
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~ 55 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRN 55 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGG
T ss_pred EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCc
Confidence 46788 999999999999999999999999999988
No 183
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.00 E-value=1.7e-05 Score=42.94 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=43.5
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
.+.+.|.+++++..|+..+++..|++++.++|+|.+ .+.++.|+.++
T Consensus 29 ~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl 76 (93)
T 2d07_B 29 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 76 (93)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTT
T ss_pred EEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHc
Confidence 477899999999999999999999999999999985 78899999887
No 184
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=97.91 E-value=7.5e-06 Score=43.51 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=31.6
Q ss_pred ecCCccHHHHHHHHhhccCCCccceEEEECC--eEcC
Q 040720 39 VKSSDTINNVKSKIQDKEGIPPDQQRLIFAG--INLK 73 (77)
Q Consensus 39 v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g--~~L~ 73 (77)
+++++||.++|..|+++.|+|+++|+|+|++ ++|+
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~ 53 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLD 53 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCC
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccc
Confidence 7889999999999999999999999999874 6663
No 185
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=97.88 E-value=2.8e-05 Score=43.19 Aligned_cols=41 Identities=15% Similarity=0.384 Sum_probs=37.3
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+..++++..++..++++.|+++++++++|+|+.|.+.-
T Consensus 44 ~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~ 84 (106)
T 2eke_C 44 FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ 84 (106)
T ss_dssp EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTC
T ss_pred EEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCC
Confidence 46788899999999999999999999999999999998753
No 186
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=97.86 E-value=1.8e-05 Score=44.26 Aligned_cols=40 Identities=20% Similarity=0.409 Sum_probs=37.3
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
.+.+..++++..++..++++.|+|+++++|+|+|+.|.+.
T Consensus 40 ~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~ 79 (110)
T 2k8h_A 40 FFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDET 79 (110)
T ss_dssp EEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSS
T ss_pred EEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC
Confidence 5678899999999999999999999999999999999875
No 187
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.84 E-value=2e-05 Score=43.58 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=37.7
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+..++++..++..++++.|+++++++|+|+|+.|.+.-
T Consensus 38 ~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~ 78 (104)
T 1wz0_A 38 QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD 78 (104)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTS
T ss_pred EEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCC
Confidence 46788999999999999999999999999999999998763
No 188
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.74 E-value=7e-05 Score=40.51 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=30.9
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECC
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAG 69 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 69 (77)
...++.+.||.+||..|+..+|+|+..|+|.|.+
T Consensus 26 e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 26 EKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 4577899999999999999999999999999873
No 189
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.36 E-value=0.00046 Score=38.80 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=34.9
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+..++++..|+...+++.|+++.+++++|+|+.|.+..
T Consensus 54 ~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~ 94 (115)
T 3kyd_D 54 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNH 94 (115)
T ss_dssp EEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTC
T ss_pred EEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCC
Confidence 45778888899999999999999999999999999987754
No 190
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00036 Score=42.68 Aligned_cols=41 Identities=15% Similarity=0.384 Sum_probs=30.9
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+..++.+..|+...+++.|+|+.++|++|+|+.|.+..
T Consensus 42 ~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~ 82 (200)
T 3pge_A 42 FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ 82 (200)
T ss_dssp EEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTC
T ss_pred EEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCC
Confidence 45667777788888888888888888888888888776653
No 191
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.32 E-value=0.00013 Score=38.44 Aligned_cols=36 Identities=6% Similarity=-0.045 Sum_probs=30.7
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL 37 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~ 37 (77)
++-+++++++|+.+|+++|++..+++++.|.+.+..
T Consensus 15 ~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~ 50 (80)
T 2pjh_A 15 VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINR 50 (80)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSC
T ss_pred CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecC
Confidence 456789999999999999999999998888776543
No 192
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.28 E-value=0.00022 Score=40.13 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=42.8
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
.+.+.|.+++++..|+...++..|+++..++|+|.+ .+.++.|..++
T Consensus 52 ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL 99 (115)
T 3kyd_D 52 EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 99 (115)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTT
T ss_pred EEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHc
Confidence 367889999999999999999999999999999985 78888898887
No 193
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00028 Score=43.16 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=42.6
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
.+.+.|.+++++..|+...++..|+|+.++||+|.+ .+.++.|..++
T Consensus 40 ~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL 87 (200)
T 3pge_A 40 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 87 (200)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTT
T ss_pred EEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHc
Confidence 467899999999999999999999999999999975 78888888877
No 194
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=96.89 E-value=0.0013 Score=34.71 Aligned_cols=45 Identities=11% Similarity=0.024 Sum_probs=25.3
Q ss_pred EEEeeCCCcHHHHHHHhhhhhCCCcc-cceEEEEE-EecCCccHHHH
Q 040720 4 LLMWKAPTPLINVKAKIQDKEGIPPD-QQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 4 ~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~~~~-~v~~~~tv~~l 48 (77)
-++|.++.||.++-...+...|||++ ..+|.|.+ .++++.++.++
T Consensus 23 ~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~Dl 69 (82)
T 3goe_A 23 RLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQST 69 (82)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGS
T ss_pred EEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhh
Confidence 34555566666666666666666555 55555554 45555555543
No 195
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.00083 Score=41.06 Aligned_cols=39 Identities=13% Similarity=0.399 Sum_probs=23.5
Q ss_pred EEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 37 LEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 37 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.+..++.+..|+....++.|+++.+++++|+|+.|.+.
T Consensus 71 FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~d 109 (207)
T 3tix_A 71 FKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQAD 109 (207)
T ss_dssp EEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSS
T ss_pred EEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCC
Confidence 455556666666666666666666666666666665543
No 196
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0019 Score=39.49 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=43.4
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
.+.+.|.+++++..|+...++..|+++..++|+|.+ .+.++.|..++
T Consensus 68 eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDL 115 (207)
T 3tix_A 68 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDL 115 (207)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTT
T ss_pred EEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHc
Confidence 467899999999999999999999999999999985 88999999888
No 197
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=96.75 E-value=0.0058 Score=32.17 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=37.0
Q ss_pred EEEecCCccHHHHHHHHhhccCCCcc-ceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPD-QQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~-~q~l~~~g~~L~d~~ 76 (77)
.+.++.+.++..+-.....+.|||++ ..+|+|.|..|+...
T Consensus 23 ~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~ 64 (82)
T 3goe_A 23 RLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPND 64 (82)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTS
T ss_pred EEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccC
Confidence 56788999999999999999999998 999999999987653
No 198
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=96.46 E-value=0.0075 Score=31.99 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=32.2
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEE
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLIT 35 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 35 (77)
|+.|.|+++.+..+|.++|+++.++|++.-+|.|
T Consensus 15 tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsY 48 (83)
T 1oey_A 15 TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSY 48 (83)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEe
Confidence 6889999999999999999999999999999988
No 199
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.45 E-value=0.0052 Score=37.49 Aligned_cols=39 Identities=15% Similarity=0.435 Sum_probs=23.5
Q ss_pred EEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCcc
Q 040720 37 LEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLV 75 (77)
Q Consensus 37 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~ 75 (77)
+.+..++.+..|+...+++.|+|+++++++|.|+.+.+.
T Consensus 35 ~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~ 73 (209)
T 3uf8_A 35 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD 73 (209)
T ss_dssp EEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTT
T ss_pred EEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCC
Confidence 445556666666666666666666666666666665443
No 200
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=96.35 E-value=0.0066 Score=34.64 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=28.2
Q ss_pred EEEeeCCCcHHHHHHHhhhhhCCCcccceEEE
Q 040720 4 LLMWKAPTPLINVKAKIQDKEGIPPDQQRLIT 35 (77)
Q Consensus 4 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 35 (77)
++.|..++|+.+++..|++..|+|++.|||..
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 56788889999999999999999999999886
No 201
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=96.28 E-value=0.00067 Score=41.98 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=0.0
Q ss_pred EEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 4 LLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 4 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
.+.|.++++...|+...++..|+++..++++|.+ .+.+++|..++
T Consensus 34 ~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL 79 (227)
T 3v7o_A 34 FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 79 (227)
T ss_dssp ----------------------------------------------
T ss_pred EEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHc
Confidence 3455556666666666666666666666666654 45555555554
No 202
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.20 E-value=0.04 Score=29.89 Aligned_cols=46 Identities=9% Similarity=0.179 Sum_probs=27.3
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+.+.|.++++...|....++..|+++...+++|.+ .+.+++|..++
T Consensus 39 v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dL 85 (97)
T 2jxx_A 39 LEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADL 85 (97)
T ss_dssp EEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHc
Confidence 44555666666666666666666666666665553 55556666555
No 203
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.19 E-value=0.0041 Score=37.98 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=39.8
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHHH
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNVK 49 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~lK 49 (77)
+.+.+..+++...|+...++..|+|+++++|+|.+ .+.+++|..++.
T Consensus 33 v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~ 80 (209)
T 3uf8_A 33 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 80 (209)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTT
T ss_pred EEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhh
Confidence 56889999999999999999999999999999963 566666666553
No 204
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=95.77 E-value=0.0016 Score=40.31 Aligned_cols=41 Identities=15% Similarity=0.384 Sum_probs=0.0
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+..++.+..++...+++.|+++.+++++|+|+.+.+.-
T Consensus 34 ~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~ddd 74 (227)
T 3v7o_A 34 FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ 74 (227)
T ss_dssp -----------------------------------------
T ss_pred EEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCC
Confidence 45778899999999999999999999999999999997653
No 205
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.65 E-value=0.085 Score=30.02 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=25.3
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPD 29 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 29 (77)
..++.|+.+.||.+++..|+.+.||+..
T Consensus 23 ~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 23 VKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred EEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 4688999999999999999999999844
No 206
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=95.65 E-value=0.045 Score=29.66 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=36.1
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+..++.+..|....+++.|+++...+++|+|..|...-
T Consensus 40 ~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~ 80 (97)
T 2jxx_A 40 EVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRE 80 (97)
T ss_dssp EEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCS
T ss_pred EEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCC
Confidence 35677889999999999999999999999999999997653
No 207
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=95.64 E-value=0.068 Score=36.75 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=30.7
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEEE
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLIT 35 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 35 (77)
.++.|..++|+.+++.+|++..|+|++.|||+.
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 367899999999999999999999999999986
No 208
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.88 E-value=0.086 Score=28.28 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=21.3
Q ss_pred EEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCc
Q 040720 37 LEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKL 74 (77)
Q Consensus 37 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d 74 (77)
+.+.++.++.++=..-..++|+.+++..|.|++++|+.
T Consensus 24 VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDL 61 (90)
T 2al3_A 24 VKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDL 61 (90)
T ss_dssp ECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESS
T ss_pred EEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccc
Confidence 44555555555555555555555555555566655543
No 209
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=94.73 E-value=0.015 Score=30.33 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=29.9
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeE
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGIN 71 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~ 71 (77)
-+++++++++.+++..|++..+++++.|.+.++..+
T Consensus 17 Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p 52 (80)
T 2pjh_A 17 RITATKRETAATFLKKVAKEFGFQNNGFSVYINRNK 52 (80)
T ss_dssp ECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCG
T ss_pred EEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCC
Confidence 356789999999999999999999888877665544
No 210
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=94.36 E-value=0.0073 Score=39.87 Aligned_cols=36 Identities=17% Similarity=0.491 Sum_probs=0.0
Q ss_pred EecCCccHHHHHHHHhhccCCCccceEEEECCeEcC
Q 040720 38 EVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLK 73 (77)
Q Consensus 38 ~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~ 73 (77)
.+..++.+..++...+++.|+++++++++|+|+.+.
T Consensus 36 kIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~ 71 (360)
T 3ix6_A 36 KIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ 71 (360)
T ss_dssp ------------------------------------
T ss_pred EEecCChHHHHHHHHHHHhCCCcceEEEEECCeECC
Confidence 334444444444444444444444444445444443
No 211
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=93.82 E-value=0.2 Score=27.14 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=18.9
Q ss_pred EecCCccHHHHHHHHhhccCCCccceEEEECCeEcCc
Q 040720 38 EVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKL 74 (77)
Q Consensus 38 ~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d 74 (77)
.+..++.+..+....+.+.|++++..+++|+|..+.+
T Consensus 36 kIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~ 72 (95)
T 2l76_A 36 PLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSP 72 (95)
T ss_dssp EECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCT
T ss_pred EEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCC
Confidence 3444445555555555555555555555555555443
No 212
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=93.80 E-value=0.15 Score=27.62 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=41.5
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHH
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNV 48 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~l 48 (77)
+-+.+..++....|....++..|+++...++.|.+ .+.+++|..+|
T Consensus 33 v~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L 79 (95)
T 2l76_A 33 VRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTL 79 (95)
T ss_dssp EEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHH
T ss_pred EEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHc
Confidence 45677888999999999999999999999999984 89999999998
No 213
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.70 E-value=0.4 Score=25.65 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=39.0
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEE-EEecCCccHHHH
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITT-LEVKSSDTINNV 48 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-~~v~~~~tv~~l 48 (77)
|...+.|.|+.|+.+|=+.-.++.|+.+++-.|.|. -.++.+....-.
T Consensus 20 rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRls 68 (90)
T 2al3_A 20 RRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFA 68 (90)
T ss_dssp CEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHH
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEec
Confidence 467899999999999999999999999999988886 356666554443
No 214
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=93.45 E-value=0.094 Score=29.80 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=28.3
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEE
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLI 66 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~ 66 (77)
.+.+..+.++.+++..|+...|+|++++||-
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW 89 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 89 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEE
Confidence 4688889999999999999999999999964
No 215
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=92.84 E-value=0.019 Score=37.71 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=0.0
Q ss_pred EEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHH
Q 040720 5 LMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINN 47 (77)
Q Consensus 5 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~ 47 (77)
+.|.++++...|+...+++.|+++.++++.|.+ .+.++.|..+
T Consensus 44 ~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~ 87 (389)
T 4da1_A 44 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPED 87 (389)
T ss_dssp --------------------------------------------
T ss_pred EEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHH
Confidence 444455555555555555555555555555543 3344444433
No 216
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=92.81 E-value=0.02 Score=37.68 Aligned_cols=41 Identities=15% Similarity=0.384 Sum_probs=0.0
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCeEcCccc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINLKLVV 76 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~ 76 (77)
.+.+..++.+..|+....++.|+++.++++.|+|+.+.+..
T Consensus 43 ~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~ 83 (389)
T 4da1_A 43 FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ 83 (389)
T ss_dssp -----------------------------------------
T ss_pred EEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCC
Confidence 46778899999999999999999999999999999987653
No 217
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.79 E-value=0.97 Score=27.47 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=43.4
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcc-cceEEEE-----E-Eec-CCccHHHHHHHHhhccCCCccceEEE-ECC
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPD-QQRLITT-----L-EVK-SSDTINNVKSKIQDKEGIPPDQQRLI-FAG 69 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~~~-----~-~v~-~~~tv~~lK~~i~~~~gip~~~q~l~-~~g 69 (77)
+++.++..+||.+|+.++....++|++ .-||... . .+. .+.|+.++ ++..+|+.|+ +.+
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~--------~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDA--------GLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHH--------TCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHh--------CCCCCCEEEEEEec
Confidence 467789999999999999999999987 6888641 2 233 35688887 6666666654 444
No 218
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=92.65 E-value=0.021 Score=37.69 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=0.0
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHHH
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNVK 49 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~lK 49 (77)
+.+.|.++++...|+...++..|++++.+++.|.+ .+.+++|..++.
T Consensus 33 v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~ 80 (360)
T 3ix6_A 33 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 80 (360)
T ss_dssp ------------------------------------------------
T ss_pred EEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcC
Confidence 56788999999999999999999999999999986 789999999984
No 219
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=92.15 E-value=0.21 Score=32.28 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=17.7
Q ss_pred EEEeeCCCcHHHHHHHhhhhhCCCcccceEEE
Q 040720 4 LLMWKAPTPLINVKAKIQDKEGIPPDQQRLIT 35 (77)
Q Consensus 4 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 35 (77)
.+.+.+.+|+.++++++++..|++++.|.|.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~ 356 (396)
T 4eut_A 325 KIYIHSYNTATIFHELVYKQTKIISSNQELIY 356 (396)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCSTTEEEES
T ss_pred EEEcCchhHHHHHHHHHHHhcCCChhhhHHHh
Confidence 34445555555555555555555555555554
No 220
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=91.60 E-value=0.31 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=22.0
Q ss_pred eEEEEeeCCCcHHHHHHHhhhh--hCCCc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDK--EGIPP 28 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~--~gi~~ 28 (77)
.+++.|-.+|||.++|+||-+. .|+|.
T Consensus 42 ~i~VkVLdCDTItQvKeKiLDavYk~~Py 70 (138)
T 2r2o_A 42 GVPVKVLDCDTISQAKEKMLDQLYKGVPL 70 (138)
T ss_dssp CEEEEEETTCBHHHHHHHHHHHHTTTSCG
T ss_pred ceeEEEeccccHHHHHHHHHHHHHcCCcc
Confidence 3678888999999999999765 66664
No 221
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=90.28 E-value=1.1 Score=27.56 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=28.0
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcc-cceEEE
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPD-QQRLIT 35 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~~ 35 (77)
++..++..+||.+|+.++....+|+++ .-||..
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~ 187 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWN 187 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEE
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 456678899999999999999999987 588865
No 222
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=90.27 E-value=0.49 Score=26.49 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=21.6
Q ss_pred EEEEeeCCCcHHHHHHHhhhh--hCCCcc
Q 040720 3 LLLMWKAPTPLINVKAKIQDK--EGIPPD 29 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~--~gi~~~ 29 (77)
+++.|-.+|||.++|+||-.. .|.|..
T Consensus 29 i~VkVLdCDTItQvKeKiLd~vyk~~p~S 57 (117)
T 4e74_A 29 VPVKILNCDTITQVKEKILDAIFKNVPCS 57 (117)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTTSCGG
T ss_pred eEeeeecCCchHHHHHHHHHHHhcCCCcc
Confidence 678888999999999999654 566643
No 223
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=89.72 E-value=0.28 Score=34.77 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=33.7
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE--EecCCccHHH
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL--EVKSSDTINN 47 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~--~v~~~~tv~~ 47 (77)
+.+.+.+..|+.+++..|++.+|||++.|.+++.. .+.++....+
T Consensus 324 ~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~ 370 (676)
T 3qa8_A 324 HTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQ 370 (676)
T ss_dssp CEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGG
T ss_pred ceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhh
Confidence 45678889999999999999999999999988752 3344444333
No 224
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=89.38 E-value=0.39 Score=26.64 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=18.9
Q ss_pred EEEEeeCCCcHHHHHHHhhhh--hCCCcc
Q 040720 3 LLLMWKAPTPLINVKAKIQDK--EGIPPD 29 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~--~gi~~~ 29 (77)
+++.|-.+|||.++|+||-.. .|.|..
T Consensus 26 i~vkVLdCDTItQvKeKiLd~vyk~~pyS 54 (111)
T 4e71_A 26 IPVKVLNCDTISQVKEKIIDQVYRGQPCS 54 (111)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTC-----
T ss_pred eeeeeeccCcHHHHHHHHHHHHHcCCccc
Confidence 678888999999999999654 566643
No 225
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=88.39 E-value=0.8 Score=25.98 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=21.1
Q ss_pred EEEEeeCCCcHHHHHHHhhhh--hCCCc
Q 040720 3 LLLMWKAPTPLINVKAKIQDK--EGIPP 28 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~--~gi~~ 28 (77)
+++.|-.+|||.++|+||-+. .|.|.
T Consensus 19 i~VkVLdCDTItQvKeKiLd~vyk~~p~ 46 (127)
T 3h6n_A 19 LSVRAMDTDTLTQVKEKILEAFCKNVPY 46 (127)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHSTTSCG
T ss_pred eeeeeeccCchhhhhHHHHHHHhccCCc
Confidence 678888999999999999655 56654
No 226
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=88.12 E-value=0.58 Score=26.53 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=22.3
Q ss_pred eEEEEeeCCCcHHHHHHHhhhh----hCCCcc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDK----EGIPPD 29 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~----~gi~~~ 29 (77)
.+++.|-.+|||.++|+||-.. .|+|..
T Consensus 40 ~v~VkVLdCDTItQVKEKILdavYk~k~~pys 71 (126)
T 3kuz_A 40 NISVNVLDCDTIGQAKEKIFQAFLSKNGSPYG 71 (126)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHHHHHSSCCS
T ss_pred ceEeeeecCCcHHHHHHHHHHHHhccCCCcCC
Confidence 3678889999999999999543 488753
No 227
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=86.93 E-value=1.6 Score=22.85 Aligned_cols=36 Identities=8% Similarity=0.194 Sum_probs=32.3
Q ss_pred EEEEecCCccHHHHHHHHhhccCCCccceEEEECCe
Q 040720 35 TTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGI 70 (77)
Q Consensus 35 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~ 70 (77)
+++.++.+.+..++..+|.++.++|++.-.|.|...
T Consensus 16 vairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 16 VVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 467899999999999999999999999888998764
No 228
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=84.18 E-value=1.1 Score=30.73 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=28.4
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEE
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLI 66 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~ 66 (77)
.+.+..+.++.+++..|++..|+|+++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 4688899999999999999999999999964
No 229
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=82.37 E-value=2.6 Score=27.06 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=31.5
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCe
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGI 70 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~ 70 (77)
.+.+.+..++.+++..++...+++++.|.+++.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~ 359 (396)
T 4eut_A 325 KIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR 359 (396)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSS
T ss_pred EEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCC
Confidence 45677889999999999999999999999999983
No 230
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=79.79 E-value=3.3 Score=21.94 Aligned_cols=49 Identities=6% Similarity=0.007 Sum_probs=35.3
Q ss_pred EEeeCCCcHHHHHHHhhhhhCCCcccceEEEEEE---ecCCccHHHHHHHHh
Q 040720 5 LMWKAPTPLINVKAKIQDKEGIPPDQQRLITTLE---VKSSDTINNVKSKIQ 53 (77)
Q Consensus 5 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~~---v~~~~tv~~lK~~i~ 53 (77)
.-|+.+.|++++..-|+...++++++--..|--+ ..++++++++=..-.
T Consensus 24 flVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k 75 (91)
T 4gdk_A 24 WAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG 75 (91)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC
Confidence 4578899999999999999999877655444322 245678888755433
No 231
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=76.32 E-value=4.8 Score=20.67 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=36.6
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCC-----cccceEEE------EEEecCCccHHHHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIP-----PDQQRLIT------TLEVKSSDTINNVKSK 51 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~-----~~~q~L~~------~~~v~~~~tv~~lK~~ 51 (77)
.+++-|+++-+..+|..+|..+.+.. ....+|-| .+.+..++-+....+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~ 63 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 63 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence 57899999999999999999999865 35567777 2345555555555443
No 232
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=75.24 E-value=4.8 Score=21.76 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=33.1
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEE--------EEEecCCccHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLIT--------TLEVKSSDTINNV 48 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~--------~~~v~~~~tv~~l 48 (77)
+-+|+|++++|+.++=+.+.++.++..+.--=++ .-.+.+...+-+.
T Consensus 21 sksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 21 CRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp EEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 4689999999999999999999887644432222 1135566666665
No 233
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=72.88 E-value=4.8 Score=28.55 Aligned_cols=35 Identities=34% Similarity=0.528 Sum_probs=30.9
Q ss_pred EEEecCCccHHHHHHHHhhccCCCccceEEEECCe
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGI 70 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~ 70 (77)
.+.+.++.++.+++..|...+|+|++.|.+++.+.
T Consensus 325 ~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~ 359 (676)
T 3qa8_A 325 TYPVTENENLQNLKSWLQQDTGIPEEEQELLQASG 359 (676)
T ss_dssp EEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSS
T ss_pred eeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccC
Confidence 46778999999999999999999999999887653
No 234
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=69.10 E-value=20 Score=23.06 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=48.4
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhC----CCcccceEEE-------------------------------------------
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEG----IPPDQQRLIT------------------------------------------- 35 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~g----i~~~~q~L~~------------------------------------------- 35 (77)
-++.++|+.||.++-.+|.++.. -++++--|+.
T Consensus 15 ~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~~~~~V~l~d 94 (371)
T 3ivf_A 15 KTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIRMLD 94 (371)
T ss_dssp EEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECEEEEEEECTT
T ss_pred EEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCceeEEEEECcC
Confidence 47889999999999999977643 2455555554
Q ss_pred ----EEEecCCccHHHHHHHHhhccCCCc-cceEEEE
Q 040720 36 ----TLEVKSSDTINNVKSKIQDKEGIPP-DQQRLIF 67 (77)
Q Consensus 36 ----~~~v~~~~tv~~lK~~i~~~~gip~-~~q~l~~ 67 (77)
.+.++..+++.++-..|....|+.. +-..|.+
T Consensus 95 g~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 95 GTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 4677889999999999999888753 4444544
No 235
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=68.62 E-value=11 Score=19.83 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=18.9
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCC
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGI 26 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi 26 (77)
.|.+.|+++-+..+|+.+|.....+
T Consensus 23 IiAIrvP~di~~~~L~dKi~~RLk~ 47 (85)
T 1ip9_A 23 IFALMLKGDTTYKELRSKIAPRIDT 47 (85)
T ss_dssp CEEEEECSCCCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3677777777888888888777776
No 236
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=66.38 E-value=15 Score=20.58 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=32.8
Q ss_pred EeeCCCcHHHHHHHhhhhhCCCcccceEEEEE--EecCCccHHHHHHHHhhccC
Q 040720 6 MWKAPTPLINVKAKIQDKEGIPPDQQRLITTL--EVKSSDTINNVKSKIQDKEG 57 (77)
Q Consensus 6 ~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~--~v~~~~tv~~lK~~i~~~~g 57 (77)
-|+.+.||+++..-|....++++++--.+|-. -.+.+.+++++=+.-.+..|
T Consensus 58 lVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDG 111 (125)
T 3m95_A 58 LVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDF 111 (125)
T ss_dssp EEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTS
T ss_pred EcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCC
Confidence 46778888888888888888876665444421 22456677776555444333
No 237
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=66.15 E-value=8.7 Score=27.23 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=21.4
Q ss_pred eEEEEeeCCCcHHHHHHHhhhh--hCCCc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDK--EGIPP 28 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~--~gi~~ 28 (77)
.+++.|-.+|||.++|+||-+. .|.|.
T Consensus 248 ~i~vkVLdCDTItQVKeKiLdavYk~~py 276 (627)
T 3ig3_A 248 QVPVKVLNCDSITQAKDKLLDTVYKGIPY 276 (627)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTTTSCG
T ss_pred ceeeEeeccCcHHHHHHHHHHHHHcCCCc
Confidence 3678889999999999999655 56553
No 238
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=66.12 E-value=4.7 Score=18.09 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=11.6
Q ss_pred CCcHHHHHHHhhhhh
Q 040720 10 PTPLINVKAKIQDKE 24 (77)
Q Consensus 10 ~~tv~~lK~~i~~~~ 24 (77)
+.||.++|..|++.+
T Consensus 2 sntvkelknyiqele 16 (46)
T 3he4_B 2 SNTVKELKNYIQELE 16 (46)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 578999999888754
No 239
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=66.04 E-value=8.2 Score=27.44 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=21.6
Q ss_pred EEEEeeCCCcHHHHHHHhhhh--hCCCcc
Q 040720 3 LLLMWKAPTPLINVKAKIQDK--EGIPPD 29 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~--~gi~~~ 29 (77)
+++.|-.+|||.++|+||-.. .|+|..
T Consensus 276 i~VkVLdCDTItQVKeKiLDavYk~~pyS 304 (644)
T 3hm6_X 276 VPVKVLDCDTISQAKEKMLDQLYKGVPLT 304 (644)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTTSCGG
T ss_pred eeeEeeccCcHHHHHHHHHHHHHcCCCcc
Confidence 678888999999999999644 666643
No 240
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=63.86 E-value=10 Score=20.81 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.4
Q ss_pred EEEEeeCCCcHHHHHHHhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDK 23 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~ 23 (77)
+++++..+.|+.++|+.+.+.
T Consensus 32 i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 32 VTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEeeccccHHHHHHHHHHH
Confidence 578899999999999998765
No 241
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=62.42 E-value=15 Score=19.34 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=15.7
Q ss_pred eeCCCcHHHHHHHhhhhhCCCcccceEE
Q 040720 7 WKAPTPLINVKAKIQDKEGIPPDQQRLI 34 (77)
Q Consensus 7 v~~~~tv~~lK~~i~~~~gi~~~~q~L~ 34 (77)
++=..++.+||.-++.+.|++.+.-.++
T Consensus 9 mDI~epL~~Lk~LLe~Rl~i~L~~y~f~ 36 (89)
T 2juo_A 9 IDINEPIGNLKKLLEPRLQCSLDAHEIC 36 (89)
T ss_dssp EESSSBGGGHHHHSHHHHCSCCSSCEEE
T ss_pred ccccCcHHHHHHHHHHHhcCCcccCeEE
Confidence 3444556666666666666665555443
No 242
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=62.07 E-value=17 Score=19.69 Aligned_cols=49 Identities=8% Similarity=0.066 Sum_probs=29.5
Q ss_pred EeeCCCcHHHHHHHhhhhhCCCcccceEEEEE--EecCCccHHHHHHHHhh
Q 040720 6 MWKAPTPLINVKAKIQDKEGIPPDQQRLITTL--EVKSSDTINNVKSKIQD 54 (77)
Q Consensus 6 ~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~--~v~~~~tv~~lK~~i~~ 54 (77)
-|+.+.|++++..-|....++++++--.+|.. ..+.+.+++++=+.-..
T Consensus 49 lVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd 99 (110)
T 2r2q_A 49 LVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHE 99 (110)
T ss_dssp EEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCC
T ss_pred EeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCC
Confidence 45667788888877777777776554333321 22456667766544433
No 243
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=61.04 E-value=19 Score=19.89 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=32.3
Q ss_pred EeeCCCcHHHHHHHhhhhhCCCcccceEEEEE--EecCCccHHHHHHHHhhccC
Q 040720 6 MWKAPTPLINVKAKIQDKEGIPPDQQRLITTL--EVKSSDTINNVKSKIQDKEG 57 (77)
Q Consensus 6 ~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~--~v~~~~tv~~lK~~i~~~~g 57 (77)
-|+.+.|++++..-|....++++++--.+|-. ..+.+.+++++=+.-....|
T Consensus 52 lVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDG 105 (118)
T 3rui_B 52 LVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDG 105 (118)
T ss_dssp EEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTS
T ss_pred EcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCC
Confidence 36777888888888888888876554433321 22456677776555444433
No 244
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=60.73 E-value=12 Score=19.35 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=22.3
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCc
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPP 28 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 28 (77)
+++.+.++..-|+..|.+-+.+..+++.
T Consensus 17 ~~~DLRIP~~~tvK~Li~~l~ea~~l~~ 44 (81)
T 2bps_A 17 SVFDLRLSDYHPVKKVIDIAWQAQSVSM 44 (81)
T ss_dssp CEEEEEEETTSBTTHHHHHHHHHSCCCS
T ss_pred ceEEEECCCchhHHHHHHHHHHHhCCCc
Confidence 3577888888888888888888888763
No 245
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=59.89 E-value=16 Score=23.12 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=24.7
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQ 31 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 31 (77)
+.+|+|++++|+++|=+.+..+.+++...-
T Consensus 43 s~~l~V~~~~TA~dv~~~L~~k~~~~~~~~ 72 (281)
T 4gmv_A 43 SKTMMVDERQTVRQVLDNLMDKSHCGYSLD 72 (281)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHSCCCCCTT
T ss_pred EEEEEECCCCcHHHHHHHHHHhcCCCCCCC
Confidence 578999999999999998888877754443
No 246
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=59.23 E-value=7.1 Score=15.71 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=8.7
Q ss_pred cHHHHHHHhhhh
Q 040720 12 PLINVKAKIQDK 23 (77)
Q Consensus 12 tv~~lK~~i~~~ 23 (77)
.|+.+|++|++.
T Consensus 15 kiaalkqkiasl 26 (28)
T 3ra3_A 15 KIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 467788888764
No 247
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=58.74 E-value=13 Score=18.82 Aligned_cols=22 Identities=0% Similarity=-0.073 Sum_probs=16.3
Q ss_pred EEEEeeCCCcHHHHHHHhhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDKE 24 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~ 24 (77)
..++++.+.||++|.+.+....
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~ 41 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAH 41 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHHHC
Confidence 4567777788888888887653
No 248
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=58.58 E-value=15 Score=19.95 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=26.3
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEE
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLI 34 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~ 34 (77)
+++.+....|+.+|+..++++.+..-+.+.|.
T Consensus 22 ~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv 53 (104)
T 1wgy_A 22 VSVKAKVSSIAQEILKVVAEKIQYAEEDLALV 53 (104)
T ss_dssp EEECCCTTCBSHHHHHHHHHHHTSCGGGEEEE
T ss_pred EEEEEeccchHHHHHHHHHHHhcCCccceEEE
Confidence 56778888999999999999999876677664
No 249
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=58.31 E-value=17 Score=18.38 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=24.6
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEE
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLI 34 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~ 34 (77)
+.-.+..++||.+|.+-|.. .|.++....|.
T Consensus 20 ~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~ 50 (84)
T 3qx1_A 20 LERRFLASNKLQIVFDFVAS-KGFPWDEYKLL 50 (84)
T ss_dssp EEEEEETTSBHHHHHHHHHH-TTCCTTTEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEE
Confidence 45567889999999999988 67777777766
No 250
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=57.65 E-value=16 Score=18.82 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=24.7
Q ss_pred EEEeeCCCcHHHHHHHhhhhhCCCcccceE
Q 040720 4 LLMWKAPTPLINVKAKIQDKEGIPPDQQRL 33 (77)
Q Consensus 4 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L 33 (77)
.++|.|+.|+.+-=.|.-+..|+.++.=..
T Consensus 15 ~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V 44 (77)
T 1c1y_B 15 VVNVRNGMSLHDCLMKALKVRGLQPECCAV 44 (77)
T ss_dssp EEECCTTCBHHHHHHHHHHTTTCCGGGEEE
T ss_pred EEEecCCcCHHHHHHHHHHHcCCCHHHeEE
Confidence 588999999998888888999998765433
No 251
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=57.18 E-value=23 Score=19.60 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=35.5
Q ss_pred EeeCCCcHHHHHHHhhhhhCCCcccceEEEE--EEecCCccHHHHHHHHhhccC
Q 040720 6 MWKAPTPLINVKAKIQDKEGIPPDQQRLITT--LEVKSSDTINNVKSKIQDKEG 57 (77)
Q Consensus 6 ~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~--~~v~~~~tv~~lK~~i~~~~g 57 (77)
-|+.+.|++++..-|....++++++--.+|- .-.+.+.+++++=+.-....|
T Consensus 53 lVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DG 106 (119)
T 3h9d_A 53 LVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDG 106 (119)
T ss_dssp EEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTS
T ss_pred EcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCC
Confidence 4778889999999999888888766544443 123567778777655444444
No 252
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=55.77 E-value=22 Score=19.05 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=27.1
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEE
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLIT 35 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 35 (77)
.+.-.+..++||.+|.+-|....+.+.....|+-
T Consensus 25 rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t 58 (109)
T 2dzk_A 25 SFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLAT 58 (109)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEc
Confidence 3566788999999999999998887766666653
No 253
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=55.47 E-value=24 Score=19.34 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=31.7
Q ss_pred EeeCCCcHHHHHHHhhhhhCCCcccceEEEEE--EecCCccHHHHHHHHhhc
Q 040720 6 MWKAPTPLINVKAKIQDKEGIPPDQQRLITTL--EVKSSDTINNVKSKIQDK 55 (77)
Q Consensus 6 ~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~--~v~~~~tv~~lK~~i~~~ 55 (77)
-|+.+.|++++..-|....++++++--.+|.. -.+.+.+++++=+.-...
T Consensus 50 lVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~ 101 (117)
T 1eo6_A 50 LVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDE 101 (117)
T ss_dssp EEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCT
T ss_pred EcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCC
Confidence 46677888888888888888877654433321 224566777765544433
No 254
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=52.20 E-value=23 Score=18.99 Aligned_cols=30 Identities=10% Similarity=0.088 Sum_probs=25.3
Q ss_pred EEEeeCCCcHHHHHHHhhhhhCCCcccceE
Q 040720 4 LLMWKAPTPLINVKAKIQDKEGIPPDQQRL 33 (77)
Q Consensus 4 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L 33 (77)
.++|.|+.|+.+-=.|.-+..|+.++.=..
T Consensus 31 ~V~VrpG~tlrdAL~KaLk~R~L~pe~C~V 60 (95)
T 2l05_A 31 VVPARCGVTVRDSLKKALMMRGLIPECCAV 60 (95)
T ss_dssp EEECCTTCBHHHHHHHHHHHHTCCGGGEEE
T ss_pred EEEecCCcCHHHHHHHHHHHcCCCHHHcEE
Confidence 589999999999989999999998766443
No 255
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=51.06 E-value=26 Score=18.50 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=13.1
Q ss_pred EEEecCCccHHHHHHHHhhccCCCcc
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPD 61 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~ 61 (77)
.+.++...+=.++|+.++..+++.+.
T Consensus 31 ~F~V~~~AnK~eIK~AVE~lf~VkV~ 56 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKLFEVEVE 56 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHHSCCCCC
T ss_pred EEEECCCCCHHHHHHHHHHHcCCceE
Confidence 34444455555555555555555443
No 256
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=50.44 E-value=30 Score=19.03 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=25.1
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEEE
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLIT 35 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 35 (77)
+.-.+..++||.+|..-|... |.++....|+.
T Consensus 56 l~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t 87 (124)
T 1wj4_A 56 EQITLPEQAKLLALVKHVQSK-GYPNERFELLT 87 (124)
T ss_dssp EEEEEETTSCHHHHHHHHHHH-HCCTTTEEEEC
T ss_pred EEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEec
Confidence 556788999999999999876 77766666653
No 257
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=49.30 E-value=33 Score=19.22 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=31.2
Q ss_pred EeeCCCcHHHHHHHhhhhhCCCcccceEE-EE--EEecCCccHHHHHHHHhh
Q 040720 6 MWKAPTPLINVKAKIQDKEGIPPDQQRLI-TT--LEVKSSDTINNVKSKIQD 54 (77)
Q Consensus 6 ~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~--~~v~~~~tv~~lK~~i~~ 54 (77)
-|+.+.|++++..-|....++++++--.+ |. .-.+.+.+++++=+.-..
T Consensus 58 lVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kd 109 (130)
T 2zjd_A 58 LVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKD 109 (130)
T ss_dssp EEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCC
T ss_pred EcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCC
Confidence 46777888888888888888887655444 32 122456677766544433
No 258
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=47.82 E-value=29 Score=18.04 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=20.4
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCccc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQ 30 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~ 30 (77)
++++.|++.+|=.++|+.++...|+.+..
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~ 52 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQ 52 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceE
Confidence 45677777777777777777777776543
No 259
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=47.39 E-value=22 Score=18.70 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=24.5
Q ss_pred EEEeeCCCcHHHHHHHhhhhhCCCcccce
Q 040720 4 LLMWKAPTPLINVKAKIQDKEGIPPDQQR 32 (77)
Q Consensus 4 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 32 (77)
.++|.|+.|+.+-=.|.-+..|+.++.=.
T Consensus 21 ~V~VrpG~tlrdaL~KaLk~R~L~pe~C~ 49 (86)
T 1wxm_A 21 VVTVRDGMSVYDSLDKALKVRGLNQDCCV 49 (86)
T ss_dssp EEECCSSCBSHHHHHHHHHTTTCCSSSEE
T ss_pred EEEecCCcCHHHHHHHHHHHcCCCHHHeE
Confidence 58999999999988999999999876543
No 260
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=46.98 E-value=31 Score=18.17 Aligned_cols=26 Identities=4% Similarity=0.028 Sum_probs=13.5
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCc
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPP 28 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~ 28 (77)
+++.|++.+|=.++|+.++...|+.+
T Consensus 24 ~~F~V~~~AnK~qIK~aVe~lf~VkV 49 (92)
T 3tve_T 24 YTFWVHPKATKTEIKNAVETAFKVKV 49 (92)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCce
Confidence 34455555555555555555555543
No 261
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=46.92 E-value=44 Score=20.02 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=26.5
Q ss_pred EEEecCCccHHHHHHHHhhccCCCcc-ceEEE
Q 040720 36 TLEVKSSDTINNVKSKIQDKEGIPPD-QQRLI 66 (77)
Q Consensus 36 ~~~v~~~~tv~~lK~~i~~~~gip~~-~q~l~ 66 (77)
...++..+|+.+++..+...+++|.+ ..||-
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW 174 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLW 174 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEE
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEE
Confidence 45678899999999999999999986 67754
No 262
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=46.02 E-value=20 Score=19.28 Aligned_cols=26 Identities=12% Similarity=-0.004 Sum_probs=22.3
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCC
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIP 27 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~ 27 (77)
++++-|+++-+-.+|..+|.++.+++
T Consensus 24 ~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 24 IFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 37888999999999999999988865
No 263
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=45.89 E-value=31 Score=17.89 Aligned_cols=22 Identities=9% Similarity=0.077 Sum_probs=16.8
Q ss_pred EEEEee--CCCcHHHHHHHhhhhh
Q 040720 3 LLLMWK--APTPLINVKAKIQDKE 24 (77)
Q Consensus 3 ~~~~v~--~~~tv~~lK~~i~~~~ 24 (77)
..+++. ++.||++|.+.+.+..
T Consensus 22 ~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 22 HKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp EEEEECSCSCCBHHHHHHHHHHHT
T ss_pred EEEecCCCCCCcHHHHHHHHHHHC
Confidence 455665 6789999999988765
No 264
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=44.22 E-value=52 Score=19.94 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=25.2
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcccc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQQ 31 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 31 (77)
+-++.|+++.|+.+|-+.+..+.+++.+..
T Consensus 46 ~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~ 75 (291)
T 3tca_A 46 TKSLMVDERQLARDVLDNLFEKTHCDCNVD 75 (291)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCCCCCTT
T ss_pred eEEEEeCCCCcHHHHHHHHHHHhCCCCCCC
Confidence 357899999999999999999999876543
No 265
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=41.19 E-value=39 Score=20.78 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=24.2
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPP 28 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~ 28 (77)
++.++++++.|+.++=+.|.+..|+..
T Consensus 12 ~~~~~v~~~tt~~el~~~v~~~l~L~e 38 (294)
T 1ef1_A 12 ELEFAIQPNTTGKQLFDQVVKTIGLRE 38 (294)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHTCCC
T ss_pred eEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 456889999999999999999999974
No 266
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.89 E-value=39 Score=17.58 Aligned_cols=29 Identities=7% Similarity=0.201 Sum_probs=19.2
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCccc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQ 30 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~ 30 (77)
++++.|++.+|=.++|+.++...|+.+..
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~ 53 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEK 53 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceE
Confidence 45666777777777777777777765433
No 267
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=39.86 E-value=39 Score=17.89 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=21.9
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccc
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQ 31 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 31 (77)
+++.|++.+|=.++|+.++...|+.+..-
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~V 53 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGI 53 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEE
Confidence 46778888888888888888888776543
No 268
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.62 E-value=4.2 Score=18.06 Aligned_cols=17 Identities=18% Similarity=0.136 Sum_probs=12.0
Q ss_pred eeCCCcHHHHHHHhhhh
Q 040720 7 WKAPTPLINVKAKIQDK 23 (77)
Q Consensus 7 v~~~~tv~~lK~~i~~~ 23 (77)
++..+|+++.|+.|+..
T Consensus 4 ~ee~mTLeEtkeQi~~l 20 (38)
T 2l5g_A 4 MEERMSLEETKEQILKL 20 (38)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHH
Confidence 44557888888888754
No 269
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=38.57 E-value=38 Score=16.81 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=15.1
Q ss_pred EecCCccHHHHHHHHhhccCCCccceEEEECCeEc
Q 040720 38 EVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINL 72 (77)
Q Consensus 38 ~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L 72 (77)
+++...|+.++- +..|+|++.-.+..+|+.+
T Consensus 16 ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v 46 (74)
T 2l32_A 16 AVDDDGTYADLV----RAVDLSPHEVTVLVDGRPV 46 (74)
T ss_dssp ECSTTCSHHHHH----HTTCCCSSCCCEECCCCCC
T ss_pred EcCCCCcHHHHH----HHcCCCcceEEEEECCEEC
Confidence 444555555442 2345555555555555544
No 270
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=38.30 E-value=49 Score=18.07 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=23.9
Q ss_pred EEEeeCCCcHHHHHHHhhhhhCCCcccc
Q 040720 4 LLMWKAPTPLINVKAKIQDKEGIPPDQQ 31 (77)
Q Consensus 4 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q 31 (77)
.++|.|+.|+.+-=.|.-+..|+.++.=
T Consensus 32 ~V~VrpG~tlrdaL~KaLk~R~L~pe~C 59 (107)
T 1rrb_A 32 VVNVRNGMSLHDCLMKALKVRGLQPECC 59 (107)
T ss_dssp EEECCTTCBHHHHHHHHHHHHTCCTTTE
T ss_pred EEEecCCcCHHHHHHHHHHHcCCCHHHc
Confidence 5899999999998888889999876654
No 271
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=37.64 E-value=48 Score=17.74 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=24.1
Q ss_pred EEEeeCCCcHHHHHHHhhhhhCCCcccce
Q 040720 4 LLMWKAPTPLINVKAKIQDKEGIPPDQQR 32 (77)
Q Consensus 4 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 32 (77)
.++|.|+.|+.+-=.|.-+..|+.++.=.
T Consensus 27 ~V~VrpG~tlrdaL~KaLk~R~L~pe~C~ 55 (96)
T 3ny5_A 27 VVPARCGVTVRDSLKKALMMRGLIPECCA 55 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHTTTCCGGGEE
T ss_pred EEEecCCcCHHHHHHHHHHHcCCChHHeE
Confidence 58899999999888888888999766543
No 272
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=37.30 E-value=52 Score=20.47 Aligned_cols=34 Identities=6% Similarity=-0.180 Sum_probs=26.8
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCc-ccceEEE
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPP-DQQRLIT 35 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~ 35 (77)
++.++++++.|+.+|=+.|....|+.. +---|.|
T Consensus 33 ~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~ 67 (314)
T 1h4r_A 33 EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQY 67 (314)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEE
Confidence 456899999999999999999999973 3334443
No 273
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=36.96 E-value=23 Score=18.10 Aligned_cols=50 Identities=10% Similarity=-0.001 Sum_probs=30.7
Q ss_pred CcHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHH--HHHHHHhhccCCCc
Q 040720 11 TPLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTIN--NVKSKIQDKEGIPP 60 (77)
Q Consensus 11 ~tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~--~lK~~i~~~~gip~ 60 (77)
+|...|+.-+++..++++.....-..+ +...-+++. ++-..+++.+|+..
T Consensus 2 ~tle~l~~I~~e~l~~d~~~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~i 54 (87)
T 2kjs_A 2 PTLDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKF 54 (87)
T ss_dssp CSHHHHHHHHHHHHTCSSCCCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHhCCCccccCCCCCcccCCCCChHHHHHHHHHHHHHhCcee
Confidence 477888888888888876654432222 222233444 56677888888644
No 274
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=35.93 E-value=55 Score=17.88 Aligned_cols=32 Identities=6% Similarity=-0.002 Sum_probs=17.0
Q ss_pred EEEEeeCCCcHHHHHHHhhhh-hCCCcccceEE
Q 040720 3 LLLMWKAPTPLINVKAKIQDK-EGIPPDQQRLI 34 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~-~gi~~~~q~L~ 34 (77)
..+.+.+++++.++.+++.+. ..++..+..|+
T Consensus 31 ~ai~~~~~~~~~~~~~~i~~~i~~~~~~~gvli 63 (135)
T 1pdo_A 31 GWIDFVPGENAETLIEKYNAQLAKLDTTKGVLF 63 (135)
T ss_dssp EEECBCTTCCHHHHHHHHHHHHTTSCCTTCEEE
T ss_pred EEEEeeCCCCHHHHHHHHHHHHHhcCCCCCEEE
Confidence 345566666666666666544 33443344444
No 275
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=35.84 E-value=47 Score=18.62 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=16.9
Q ss_pred EEEEeeCCCcHHHHHHHhhhh-hCC-CcccceEEE
Q 040720 3 LLLMWKAPTPLINVKAKIQDK-EGI-PPDQQRLIT 35 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~-~gi-~~~~q~L~~ 35 (77)
..+.+.+++++.++.+++.+. ..+ +..+..|++
T Consensus 33 ~av~~~~~~~~~~~~~~i~~~i~~~~~~~~gvliL 67 (144)
T 3lfh_A 33 HTVGLNLGDNIEVVRKEVEKIIKEKLQEDKEIIIV 67 (144)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred EEEEccCCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 345566666666666665543 223 334444443
No 276
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=35.11 E-value=53 Score=20.47 Aligned_cols=34 Identities=6% Similarity=-0.057 Sum_probs=27.3
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCc-ccceEEE
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPP-DQQRLIT 35 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~ 35 (77)
...+++++..|+.+|-+.|.+..|+.. +.--|.|
T Consensus 29 ~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 63 (296)
T 3qij_A 29 VYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAI 63 (296)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEE
Confidence 467899999999999999999999963 3345544
No 277
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=35.07 E-value=90 Score=21.34 Aligned_cols=42 Identities=7% Similarity=0.146 Sum_probs=32.6
Q ss_pred EEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEEEecCCccHHHHHHHHhh
Q 040720 4 LLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTLEVKSSDTINNVKSKIQD 54 (77)
Q Consensus 4 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~~v~~~~tv~~lK~~i~~ 54 (77)
..-+..++++..|+. +++..||+ ...++.++++.++|+.+.-
T Consensus 450 H~~~~~g~~~~~L~~-~a~~lgie--------~~~i~~~~~~~~~~~~~~~ 491 (500)
T 4f2d_A 450 HTVFSHALNLNDMRQ-FAEMHDIE--------ITVIDNDTRLPAFKDALRW 491 (500)
T ss_dssp EEEEESSCCHHHHHH-HHHHTTCE--------EEEESTTCCHHHHHHHHHH
T ss_pred eEEEECCCCHHHHHH-HHHHcCCE--------EEEECCCCCHHHHHHHHHH
Confidence 344567889999966 88889987 3456889999999988753
No 278
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=34.31 E-value=56 Score=18.14 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=24.9
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcc------cceEE
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPD------QQRLI 34 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~------~q~L~ 34 (77)
+++.+.-..|+.+|+..++++.+..-+ .+.|.
T Consensus 22 ~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv 59 (120)
T 2dhz_A 22 VTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILV 59 (120)
T ss_dssp CCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEE
T ss_pred EEEEEeccccHHHHHHHHHHHhccccccccccCceEEE
Confidence 356778889999999999999887543 67665
No 279
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=33.93 E-value=51 Score=16.94 Aligned_cols=21 Identities=5% Similarity=0.053 Sum_probs=15.4
Q ss_pred EEEEeeCCCcHHHHHHHhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDK 23 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~ 23 (77)
..+++.++.||.+|.+.+...
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~ 49 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKR 49 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhH
Confidence 456666778888888887664
No 280
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=33.47 E-value=71 Score=18.57 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=19.6
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCccc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQ 30 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~ 30 (77)
++++.|++..|=.+||+.|+...|+.+..
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~k 123 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAK 123 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEE
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceE
Confidence 45667777777777777777777766544
No 281
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=33.43 E-value=40 Score=21.01 Aligned_cols=28 Identities=11% Similarity=-0.083 Sum_probs=20.6
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCcc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPD 29 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 29 (77)
+.+|.|+++.|+++|=..+..+.++..+
T Consensus 20 s~~l~V~~~mta~ev~~~l~~k~~~~~~ 47 (256)
T 3hk0_A 20 SKVVEILADMTARDLCQLLVYKSHSVDD 47 (256)
T ss_dssp EEEEEECTTCBHHHHHHHHHCCC-----
T ss_pred EEEEEECCCCCHHHHHHHHHHhcCCCCC
Confidence 4789999999999999988887766543
No 282
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=33.00 E-value=16 Score=13.96 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=12.1
Q ss_pred eeCCCcHHHHHHHhhhhh
Q 040720 7 WKAPTPLINVKAKIQDKE 24 (77)
Q Consensus 7 v~~~~tv~~lK~~i~~~~ 24 (77)
++..|..+.++.+++..+
T Consensus 3 mnrydqaatlrakmekre 20 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKRE 20 (26)
T ss_pred cchHHHHHHHHHHHHHHh
Confidence 455667777887777654
No 283
>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A {Vibrio cholerae} PDB: 3o44_A
Probab=32.91 E-value=77 Score=22.86 Aligned_cols=55 Identities=13% Similarity=0.324 Sum_probs=37.9
Q ss_pred cHHHHHHHhhhhhCCCcccceEEEEE-EecCCccHHHHHHHHhhccCCCccceEEE---ECCeEc
Q 040720 12 PLINVKAKIQDKEGIPPDQQRLITTL-EVKSSDTINNVKSKIQDKEGIPPDQQRLI---FAGINL 72 (77)
Q Consensus 12 tv~~lK~~i~~~~gi~~~~q~L~~~~-~v~~~~tv~~lK~~i~~~~gip~~~q~l~---~~g~~L 72 (77)
+...+++.+=. ..++.++.+ .+.+++-...+|++++...|+......++ |.|+.|
T Consensus 44 ~l~~~~~~Vl~------~~~r~liDfS~i~d~~~~~~~~~~~r~~~G~~f~~~f~~it~~kgell 102 (721)
T 1xez_A 44 SLAELRDLVIN------QQKRVLVDFSQISDAEGQAEMQAQFRKAYGVGFANQFIVITEHKGELL 102 (721)
T ss_dssp CHHHHHHHHTT------SCCEEEEECTTCCSHHHHHHHHHHHHHHHSCBCCSSEEEEEEETTEEE
T ss_pred hHHHHHHHHHh------cCceEEEEcccccChhHHHHHHHHHHHhhCccccccEEEEEcccCcEE
Confidence 44455555433 455655555 57788888899999999999977654443 888875
No 284
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=32.83 E-value=47 Score=16.12 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=13.0
Q ss_pred EEeeCCCcHHHHHHHhhhhhC
Q 040720 5 LMWKAPTPLINVKAKIQDKEG 25 (77)
Q Consensus 5 ~~v~~~~tv~~lK~~i~~~~g 25 (77)
+++ ...|+++|.+.+....+
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~ 35 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEG 35 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTT
T ss_pred Eee-CCCcHHHHHHHHHHCcC
Confidence 445 55788888877765433
No 285
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=31.49 E-value=91 Score=20.94 Aligned_cols=63 Identities=13% Similarity=0.284 Sum_probs=29.6
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCc----ccceEEEEEEecCCccHHHHHHHHhhccCCCccceEEEECCeEc
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPP----DQQRLITTLEVKSSDTINNVKSKIQDKEGIPPDQQRLIFAGINL 72 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~----~~q~L~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L 72 (77)
+++=++|++.|.++..++.+..|... ..++. .-...+.+.++.+..-..+|+... +.|+|...
T Consensus 40 isl~ipp~~~i~~v~~~l~~e~~~asnIksk~~r~------~v~~ai~s~~~rlkl~~~vp~~g~-v~~~G~~~ 106 (441)
T 3e20_C 40 ITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRL------SVLSAITSTRERLKLYNKVPDNGL-VIYCGEVI 106 (441)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHTTCCCCHHHHH------HHHHHHHHHHHHHTTCSSCTTSCC-EEEEEEEC
T ss_pred EEEEeCCCCcHHHHHHHHHHHHhhhhhhhhhhhcc------chhhHHHHHHHHHhhhccCCCCCE-EEEeceee
Confidence 45556666666666666665544221 11110 112233344444433344555443 46777765
No 286
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=30.84 E-value=75 Score=20.33 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=24.2
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPP 28 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~ 28 (77)
...++++++.|+.++=+.|+...|+..
T Consensus 97 ~~~~~vd~~tt~~el~~~v~~~l~L~e 123 (371)
T 3ivf_A 97 VKTIMVDDSKTVTDMLMTICARIGITN 123 (371)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTCSC
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 357899999999999999999999973
No 287
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=29.71 E-value=43 Score=17.51 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=33.7
Q ss_pred EEEeeCCCcHHHHHHHhhhhhCCCcccceEEEEE-E-e-cCCccHHHHHHHHhhccCCCcc
Q 040720 4 LLMWKAPTPLINVKAKIQDKEGIPPDQQRLITTL-E-V-KSSDTINNVKSKIQDKEGIPPD 61 (77)
Q Consensus 4 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~~-~-v-~~~~tv~~lK~~i~~~~gip~~ 61 (77)
...+++-+....|+..|++..|++++....--.+ . + -++-..-++-..+++++|+..+
T Consensus 19 ~~~m~~mei~~~l~~iiae~l~~~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~ 79 (101)
T 4dxe_H 19 YFQSNAMENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIP 79 (101)
T ss_dssp -----CTTHHHHHHHHHHHTTCCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCC
T ss_pred HHhcCHHHHHHHHHHHHHHHHCcChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCC
Confidence 3456677888999999999999987654221111 0 0 0112233677888888887543
No 288
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=29.09 E-value=76 Score=17.40 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=22.7
Q ss_pred EEEEeeCCCcHHHHHHHhhhh-hCCCcccceEEE
Q 040720 3 LLLMWKAPTPLINVKAKIQDK-EGIPPDQQRLIT 35 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~ 35 (77)
..+++.+++++.++.+++.+. ..+...+..|++
T Consensus 34 ~aid~~~~~~~~~~~~~i~~~i~~~d~~~GVLiL 67 (130)
T 3gx1_A 34 IALDMPLTVEVKAMYEKLKQTVVKLNPVKGVLIL 67 (130)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTSCCTTCEEEE
T ss_pred EEEEecCCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 467888888888888887665 445555555554
No 289
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=27.73 E-value=28 Score=15.12 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=8.6
Q ss_pred CCcHHHHHHHhhhh
Q 040720 10 PTPLINVKAKIQDK 23 (77)
Q Consensus 10 ~~tv~~lK~~i~~~ 23 (77)
+.++..||.||+..
T Consensus 3 ~~~i~avKkKiq~l 16 (37)
T 3azd_A 3 SSSLEAVRRKIRSL 16 (37)
T ss_dssp ---CHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 45778888888764
No 290
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=27.65 E-value=21 Score=17.28 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHhhhhhCCCcccceEEEEE----EecCCccHHHHHHHHhhccCCCcc
Q 040720 9 APTPLINVKAKIQDKEGIPPDQQRLITTL----EVKSSDTINNVKSKIQDKEGIPPD 61 (77)
Q Consensus 9 ~~~tv~~lK~~i~~~~gi~~~~q~L~~~~----~v~~~~tv~~lK~~i~~~~gip~~ 61 (77)
..+....++..+++..|++++....--.+ .+ ++-..-++...+++++|+...
T Consensus 5 ~~~i~~~l~~~l~~~l~~~~~~i~~~~~l~~dlG~-DSl~~vel~~~le~~fgi~i~ 60 (81)
T 1f80_D 5 SADTLERVTKIIVDRLGVDEADVKLEASFKEDLGA-DXLDVVELVMELEDEFDMEIS 60 (81)
T ss_dssp CCHHHHHHHHHHHHHSSCCSSCCCTTCBHHHHSCC-CHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCHHhCCCccchHHHcCC-cHHHHHHHHHHHHHHhCCccC
Confidence 34456688888999889876543211011 11 122333677888888887543
No 291
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=26.83 E-value=95 Score=17.75 Aligned_cols=29 Identities=7% Similarity=0.043 Sum_probs=19.7
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCccc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQ 30 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~ 30 (77)
++++.|++.++=.++|+.++...|+.+..
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~k 109 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLK 109 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeE
Confidence 45667777777777777777777766543
No 292
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=26.43 E-value=76 Score=16.53 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=26.7
Q ss_pred CeEEEEeeCCCcHHHHHHHhhhhhCCCcccceEEE
Q 040720 1 RRLLLMWKAPTPLINVKAKIQDKEGIPPDQQRLIT 35 (77)
Q Consensus 1 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 35 (77)
|.|+++=+...+-.++..+++..+.++...-.+.|
T Consensus 18 RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y 52 (86)
T 1wmh_B 18 RRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGY 52 (86)
T ss_dssp EEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEE
T ss_pred eEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEE
Confidence 45677656668999999999999998766665555
No 293
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=26.19 E-value=1e+02 Score=17.83 Aligned_cols=29 Identities=3% Similarity=0.083 Sum_probs=19.4
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCccc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQ 30 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~ 30 (77)
++++.|++..+=.++|+.++...|+.+..
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~k 117 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRS 117 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeE
Confidence 45666777777777777777777765533
No 294
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=25.79 E-value=49 Score=14.12 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=14.9
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCc
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPP 28 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~ 28 (77)
....|.++||...+-.+ .|++.
T Consensus 3 ~~y~V~~GDtl~~Ia~~----~~~~~ 24 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKR----HGVNI 24 (48)
T ss_dssp CEEEECTTCCHHHHHHH----HTCCH
T ss_pred EEEEEcCCCcHHHHHHH----HCcCH
Confidence 35678899998886544 46553
No 295
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=25.74 E-value=89 Score=17.08 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=30.2
Q ss_pred EEEEeeCCCcHHHHHHHhhhh-hCCCcccceEEEE---EEe-cCCccHHHH
Q 040720 3 LLLMWKAPTPLINVKAKIQDK-EGIPPDQQRLITT---LEV-KSSDTINNV 48 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~~---~~v-~~~~tv~~l 48 (77)
+.-.+..++||.+|.+-|... .+.+.....|+.. -.+ +.+.|+.++
T Consensus 65 l~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~ea 115 (127)
T 1s3s_G 65 LVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEA 115 (127)
T ss_dssp EEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHC
Confidence 556778899999999999885 3444455566542 122 345677776
No 296
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=25.69 E-value=63 Score=19.47 Aligned_cols=21 Identities=5% Similarity=-0.140 Sum_probs=17.4
Q ss_pred EEEEeeCCCcHHHHHHHhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDK 23 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~ 23 (77)
-.+.+.++||.++|.+++.+.
T Consensus 162 ~~v~I~~~dt~~~L~~rl~~~ 182 (215)
T 3da8_A 162 QPVPVLDGDDEETLHERIKVT 182 (215)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHH
Confidence 357788999999999998864
No 297
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=25.67 E-value=95 Score=17.37 Aligned_cols=19 Identities=5% Similarity=0.090 Sum_probs=10.0
Q ss_pred EEEeeCCCcHHHHHHHhhh
Q 040720 4 LLMWKAPTPLINVKAKIQD 22 (77)
Q Consensus 4 ~~~v~~~~tv~~lK~~i~~ 22 (77)
.+.+.+++++.++.+++.+
T Consensus 32 av~~~~~~~~~~~~~~i~~ 50 (150)
T 3ipr_A 32 TVNLNSGDDVQALGGQIKT 50 (150)
T ss_dssp EEEECTTCCHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHH
Confidence 4455555555555555543
No 298
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=25.67 E-value=79 Score=16.47 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.9
Q ss_pred CCcHHHHHHHhhhhhCCCc
Q 040720 10 PTPLINVKAKIQDKEGIPP 28 (77)
Q Consensus 10 ~~tv~~lK~~i~~~~gi~~ 28 (77)
+-+|.+||..|-...+.-.
T Consensus 28 ~Isv~dLKr~I~~~~kl~~ 46 (86)
T 2c7h_A 28 HISLCDLKKQIMGREKLKA 46 (86)
T ss_dssp EEEHHHHHHHHHHHHTCCT
T ss_pred EEEHHHHHHHHHHHhCCCC
Confidence 4789999999998888754
No 299
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=25.60 E-value=60 Score=15.10 Aligned_cols=19 Identities=5% Similarity=0.230 Sum_probs=14.3
Q ss_pred CCcHHHHHHHhhhhhCCCcc
Q 040720 10 PTPLINVKAKIQDKEGIPPD 29 (77)
Q Consensus 10 ~~tv~~lK~~i~~~~gi~~~ 29 (77)
..||.+||+.+.. .|++..
T Consensus 7 kltV~eLK~~Lk~-RGL~~~ 25 (51)
T 1h1j_S 7 SLTVVQLKDLLTK-RNLSVG 25 (51)
T ss_dssp GCCHHHHHHHHHH-TTCCCC
T ss_pred HCcHHHHHHHHHH-cCCCCC
Confidence 4789999997665 777753
No 300
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=25.42 E-value=65 Score=19.26 Aligned_cols=21 Identities=5% Similarity=-0.116 Sum_probs=17.5
Q ss_pred EEEEeeCCCcHHHHHHHhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDK 23 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~ 23 (77)
-.+.+.++||.++|.+++.+.
T Consensus 153 ~~~~i~~~dt~~~L~~rl~~~ 173 (216)
T 2ywr_A 153 AVVPVLPEDDENTLADRILKW 173 (216)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 357889999999999998764
No 301
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=25.40 E-value=65 Score=19.22 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=17.5
Q ss_pred EEEEeeCCCcHHHHHHHhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDK 23 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~ 23 (77)
-.+.+.++||.++|..++.+.
T Consensus 155 ~~v~I~~~dt~~~L~~r~~~~ 175 (212)
T 3av3_A 155 RVVPIVPGEPIEALEERIHQV 175 (212)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 357789999999999998764
No 302
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=25.35 E-value=80 Score=16.43 Aligned_cols=28 Identities=7% Similarity=0.216 Sum_probs=20.0
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCccc
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQ 30 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~ 30 (77)
+.+.++++.+-.+|.+++++.-+++.++
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~ 45 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQ 45 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 4566777777888888888877776433
No 303
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=25.11 E-value=82 Score=16.45 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=37.7
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCc-----ccceEEEEEEecCCccHHHHHHHHhhccCC
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPP-----DQQRLITTLEVKSSDTINNVKSKIQDKEGI 58 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~-----~~q~L~~~~~v~~~~tv~~lK~~i~~~~gi 58 (77)
+.+.+.|+ .+.++++.|....|+.. +.-+++..++.+....+.+.-..|+.-.|+
T Consensus 10 lvV~~~p~-~~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i~~I~~i~GV 69 (95)
T 2jsx_A 10 LVVQAKSE-RISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIESVRNVEGV 69 (95)
T ss_dssp EEEEECTT-SHHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHTTSTTE
T ss_pred EEEEECCC-CHHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHHHHHhcCCCc
Confidence 45666664 48999999999999863 235787777776665555555666665554
No 304
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=25.02 E-value=99 Score=21.02 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=24.4
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPP 28 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~ 28 (77)
...++++++.|+.+|-+.|+...|+..
T Consensus 228 ~~~~~v~~~tt~~el~~~v~~~lgL~e 254 (555)
T 3au4_A 228 SCKITINSHTTAGEVVEKLIRGLAMED 254 (555)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCTT
T ss_pred eEEEEeCCCCcHHHHHHHHHHHcCCCC
Confidence 367899999999999999999999974
No 305
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=24.89 E-value=67 Score=19.36 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=17.8
Q ss_pred EEEEeeCCCcHHHHHHHhhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDKE 24 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~ 24 (77)
-.+.+.++||.++|.+++.+..
T Consensus 155 ~~v~I~~~dt~~~L~~rl~~~e 176 (215)
T 3kcq_A 155 AAVPVLREDTAESLASRILAAE 176 (215)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHH
Confidence 3578899999999999987643
No 306
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=24.59 E-value=57 Score=14.43 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=8.2
Q ss_pred HHHHHhhhhhCCCc
Q 040720 15 NVKAKIQDKEGIPP 28 (77)
Q Consensus 15 ~lK~~i~~~~gi~~ 28 (77)
+|-..++++.|+++
T Consensus 20 eLvk~leekfGVsa 33 (40)
T 1dd4_C 20 ELVKKLEDKFGVTA 33 (40)
T ss_dssp HHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHCCCc
Confidence 44455566677764
No 307
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=24.51 E-value=69 Score=19.29 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=17.5
Q ss_pred EEEEeeCCCcHHHHHHHhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDK 23 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~ 23 (77)
-.+.+.++||.++|..++.+.
T Consensus 154 ~~v~I~~~dt~~~L~~rl~~~ 174 (211)
T 3p9x_A 154 EAVSIEEEDTLETLTTKIQAV 174 (211)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 357889999999999998764
No 308
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=24.51 E-value=71 Score=16.74 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=16.6
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPP 28 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~ 28 (77)
++..++...|-+-.|=+++....|+++
T Consensus 19 ~l~Fe~~nhDDi~~Ive~~~~~~~~~~ 45 (88)
T 3cjl_A 19 TLSFEFSLHDDLFKLLEKVDGKMDMTP 45 (88)
T ss_dssp EEEEEEEESSCHHHHHHHHTTTSSSCH
T ss_pred CeEEeccChHHHHHHHHHhhccCCCCH
Confidence 455666666666666666655555543
No 309
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=24.27 E-value=70 Score=19.18 Aligned_cols=21 Identities=5% Similarity=-0.073 Sum_probs=17.3
Q ss_pred EEEEeeCCCcHHHHHHHhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDK 23 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~ 23 (77)
-.+.+.++||..+|.+++.+.
T Consensus 159 ~~v~I~~~dt~~~L~~r~~~~ 179 (209)
T 4ds3_A 159 AAVPVLDGDTAETLAARVLKA 179 (209)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 357788999999999998764
No 310
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=24.11 E-value=70 Score=19.41 Aligned_cols=21 Identities=5% Similarity=0.034 Sum_probs=17.3
Q ss_pred EEEEeeCCCcHHHHHHHhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDK 23 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~ 23 (77)
-.+.+.++||.++|.+++.+.
T Consensus 174 ~~v~I~~~dt~~~L~~rl~~~ 194 (229)
T 3auf_A 174 AAVPVLEGDTVEDLRRRILAE 194 (229)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 357788999999999998764
No 311
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=24.07 E-value=69 Score=15.26 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=18.7
Q ss_pred EEEEeeCCCcHHHHHH-------HhhhhhCCCcccceEEE
Q 040720 3 LLLMWKAPTPLINVKA-------KIQDKEGIPPDQQRLIT 35 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~-------~i~~~~gi~~~~q~L~~ 35 (77)
+.+.+.++-|.++-+. .+.+..|+|++.-..++
T Consensus 4 I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i 43 (72)
T 3mb2_A 4 LRITMLEGRSTEQKAELARALSAAAAAAFDVPLAEVRLII 43 (72)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEE
Confidence 3456666666554333 33455888877654443
No 312
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=24.04 E-value=87 Score=16.36 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=15.0
Q ss_pred HHHHHHhhhhhCCCcccceEEE
Q 040720 14 INVKAKIQDKEGIPPDQQRLIT 35 (77)
Q Consensus 14 ~~lK~~i~~~~gi~~~~q~L~~ 35 (77)
+.+-+.+++..|+|+++.-+.|
T Consensus 78 ~~i~~~l~~~Lgi~~~riyI~f 99 (114)
T 4dh4_A 78 AALSAACERHLGVPKNRIYTTF 99 (114)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEE
T ss_pred HHHHHHHHHHhCcCcccEEEEE
Confidence 3455556677899988876554
No 313
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=24.01 E-value=85 Score=16.27 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=14.6
Q ss_pred HHHHHHhhhhhCCCcccceEEE
Q 040720 14 INVKAKIQDKEGIPPDQQRLIT 35 (77)
Q Consensus 14 ~~lK~~i~~~~gi~~~~q~L~~ 35 (77)
+.+-+.+++..|+|+++....|
T Consensus 78 ~~i~~~l~~~lgi~~~~v~I~~ 99 (112)
T 3b64_A 78 SIVTAAITKECGIVADRIFVLY 99 (112)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEE
T ss_pred HHHHHHHHHHhCcCcceEEEEE
Confidence 3455556677899988765543
No 314
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=23.84 E-value=72 Score=19.03 Aligned_cols=21 Identities=5% Similarity=0.006 Sum_probs=17.2
Q ss_pred EEEEeeCCCcHHHHHHHhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDK 23 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~ 23 (77)
-.+.+.++||.++|.+++.+.
T Consensus 152 ~~v~I~~~dt~~~L~~rl~~~ 172 (209)
T 1meo_A 152 EAVPVKRGDTVATLSERVKLA 172 (209)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 357788999999999988764
No 315
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=23.78 E-value=46 Score=16.05 Aligned_cols=20 Identities=0% Similarity=0.084 Sum_probs=13.4
Q ss_pred EEEeeCCCcHHHHHHHhhhh
Q 040720 4 LLMWKAPTPLINVKAKIQDK 23 (77)
Q Consensus 4 ~~~v~~~~tv~~lK~~i~~~ 23 (77)
.+++..+.||.++.+.+...
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~ 38 (77)
T 2q5w_D 19 DIVLEQALTVQQFEDLLFER 38 (77)
T ss_dssp ECCCSSCEEHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 44555667888887776654
No 316
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=23.43 E-value=75 Score=17.29 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=16.2
Q ss_pred cCCCccceEEEECCeEcCc
Q 040720 56 EGIPPDQQRLIFAGINLKL 74 (77)
Q Consensus 56 ~gip~~~q~l~~~g~~L~d 74 (77)
.|.|.-...|+++|+.|..
T Consensus 25 ~G~P~P~I~W~knG~~l~~ 43 (126)
T 1he7_A 25 DGQPAPSLRWLFNGSVLNE 43 (126)
T ss_dssp CCSSCCEEEEEETTEECCC
T ss_pred eeeCCCeEEEEECCEECCC
Confidence 3888888999999999864
No 317
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=23.35 E-value=1e+02 Score=16.96 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=18.0
Q ss_pred CCcHHHHHHHhhhhh-CCCcccceEEE
Q 040720 10 PTPLINVKAKIQDKE-GIPPDQQRLIT 35 (77)
Q Consensus 10 ~~tv~~lK~~i~~~~-gi~~~~q~L~~ 35 (77)
..+...|+.+++... ++....-.|.|
T Consensus 56 ~~s~~~L~~kV~~lFp~L~~~~f~l~Y 82 (117)
T 2ktr_A 56 PGPSERLLSRVAVLFPALRPGGFQAHY 82 (117)
T ss_dssp CCHHHHHHHHHHHHCTTSCSSCEEEEE
T ss_pred CCCHHHHHHHHHHHccccCCCcEEEEE
Confidence 358889999999987 55544444444
No 318
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=23.30 E-value=75 Score=18.98 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=17.4
Q ss_pred EEEEeeCCCcHHHHHHHhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDK 23 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~ 23 (77)
..+.+.++||.++|.+++.+.
T Consensus 152 ~~v~I~~~dt~~~L~~rl~~~ 172 (212)
T 1jkx_A 152 AKVPVFAGDSEDDITARVQTQ 172 (212)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 357788999999999998764
No 319
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=23.02 E-value=91 Score=16.21 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=37.1
Q ss_pred HHHHHHHhhhhhCCCcccceEEE------------------EEEecCCccHHHHH-------HHHhhccCCCccceEEEE
Q 040720 13 LINVKAKIQDKEGIPPDQQRLIT------------------TLEVKSSDTINNVK-------SKIQDKEGIPPDQQRLIF 67 (77)
Q Consensus 13 v~~lK~~i~~~~gi~~~~q~L~~------------------~~~v~~~~tv~~lK-------~~i~~~~gip~~~q~l~~ 67 (77)
...+-+.+++..|.|.+.+...+ .+.+-...+.++-+ ..+++..|+|++...+.|
T Consensus 20 ~~~~~~~l~~~lgkP~~~~~v~~~~~~~~~~~g~~~~~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~ 99 (115)
T 1uiz_A 20 LSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINY 99 (115)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred HHHHHHHHHHHHCcChhHEEEEEECCcceEECCCCCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEE
Confidence 55777778888999988666555 22333334544333 445556799988877766
Q ss_pred CCeE
Q 040720 68 AGIN 71 (77)
Q Consensus 68 ~g~~ 71 (77)
..-.
T Consensus 100 ~e~~ 103 (115)
T 1uiz_A 100 YDLN 103 (115)
T ss_dssp EECC
T ss_pred EECC
Confidence 5433
No 320
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=22.89 E-value=1.1e+02 Score=17.75 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=20.0
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCccc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPPDQ 30 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~ 30 (77)
++++.|+...+=.++|+.++...|+.+..
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~k 119 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKK 119 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceE
Confidence 45667777777777777777777766543
No 321
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=22.83 E-value=1.2e+02 Score=19.62 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=36.1
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCc-ccceEEE-------EEEecCCccHHHHHHH
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPP-DQQRLIT-------TLEVKSSDTINNVKSK 51 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~-------~~~v~~~~tv~~lK~~ 51 (77)
...++++++.|+.+|=..|+...|+.. +.--|.+ ..+++++..+.+...+
T Consensus 23 ~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~~~k 80 (375)
T 2al6_A 23 ASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVREK 80 (375)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhhhhh
Confidence 467899999999999999999999942 3334433 1256777787765443
No 322
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=22.64 E-value=79 Score=19.05 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=17.4
Q ss_pred EEEEeeCCCcHHHHHHHhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDK 23 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~ 23 (77)
..+.+.++||.++|.+++.+.
T Consensus 156 ~~v~I~~~dt~~~L~~rl~~~ 176 (215)
T 3tqr_A 156 ARLSITPQDTPETLKTRVHAL 176 (215)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 357788999999999998764
No 323
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=22.54 E-value=75 Score=20.23 Aligned_cols=22 Identities=14% Similarity=-0.034 Sum_probs=17.6
Q ss_pred EEEEeeCCCcHHHHHHHhhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDKE 24 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~ 24 (77)
-.+.+.++||.++|..++.+.+
T Consensus 254 ~~v~I~~~dt~~~L~~r~~~~e 275 (302)
T 3o1l_A 254 DVVRVSHRDSIENMVRFGRDVE 275 (302)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 3567889999999999887653
No 324
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=22.50 E-value=76 Score=20.07 Aligned_cols=22 Identities=14% Similarity=-0.096 Sum_probs=17.7
Q ss_pred EEEEeeCCCcHHHHHHHhhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDKE 24 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~ 24 (77)
-.+.+.++||.++|..++.+.+
T Consensus 244 ~~v~i~~~dt~~~L~~r~~~~e 265 (292)
T 3lou_A 244 VVERVDHSYRPEQLLAVGRDVE 265 (292)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 3577889999999999887653
No 325
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=22.16 E-value=97 Score=16.23 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=15.6
Q ss_pred HHHHHHhhhhhCCCcccceEEE
Q 040720 14 INVKAKIQDKEGIPPDQQRLIT 35 (77)
Q Consensus 14 ~~lK~~i~~~~gi~~~~q~L~~ 35 (77)
+.|-+.+++..|+|+++.-+.|
T Consensus 77 ~~i~~~l~~~Lgi~~~riyI~f 98 (114)
T 3djh_A 77 KLLCGLLAERLRISPDRVYINY 98 (114)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEE
T ss_pred HHHHHHHHHHhCcCcceEEEEE
Confidence 4555667778999988876544
No 326
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=22.00 E-value=93 Score=23.65 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=19.2
Q ss_pred eEEEEeeCCCcHHHHHHHhhhh
Q 040720 2 RLLLMWKAPTPLINVKAKIQDK 23 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~ 23 (77)
.++++|..+.|++++|+.+.+.
T Consensus 63 ~i~~~v~~~~Tl~~iK~~lw~~ 84 (1092)
T 2y3a_A 63 YIQLEVPREATISYIKQMLWKQ 84 (1092)
T ss_dssp EEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEEecCcccHHHHHHHHHHH
Confidence 3678999999999999999765
No 327
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=21.89 E-value=79 Score=19.88 Aligned_cols=22 Identities=18% Similarity=-0.058 Sum_probs=17.6
Q ss_pred EEEEeeCCCcHHHHHHHhhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDKE 24 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~ 24 (77)
-.+.+.++||.++|..++.+.+
T Consensus 239 ~~~~i~~~dt~~~L~~r~~~~e 260 (286)
T 3n0v_A 239 GVEVVDHSHYPEDLIAKGRDIE 260 (286)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 3567889999999999887654
No 328
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=21.74 E-value=1e+02 Score=16.28 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=30.9
Q ss_pred EEEEeeCCCcHHHHHHHhhhhhCCCcccceEEEE-----EEecCCccHHHH
Q 040720 3 LLLMWKAPTPLINVKAKIQDKEGIPPDQQRLITT-----LEVKSSDTINNV 48 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-----~~v~~~~tv~~l 48 (77)
+.-.+..++||.+|..-|.. .+..+....|+-. +..+.+.|+.++
T Consensus 36 ~~rrF~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~d~~~TL~e~ 85 (109)
T 2cr5_A 36 LRRRFFKSWNSQVLLDWMMK-VGYHKSLYRLSTSFPRRALEVEGGSSLEDI 85 (109)
T ss_dssp EEEEEESSSBTHHHHHHHHH-HTCCTTTEEEECSSSCCBCCCCSSCBHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHh-cCCCCCCeEEEeCCCCcCCCCCCCCCHHHc
Confidence 45678899999999999986 4555566666532 222456777777
No 329
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=21.72 E-value=80 Score=19.87 Aligned_cols=22 Identities=14% Similarity=-0.087 Sum_probs=17.5
Q ss_pred EEEEeeCCCcHHHHHHHhhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDKE 24 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~ 24 (77)
-.+.+.++||.++|..++.+.+
T Consensus 238 ~~v~i~~~dt~~~L~~r~~~~e 259 (287)
T 3nrb_A 238 DVEHVSHRDSAEDLVRKGRDIE 259 (287)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 3567889999999998887653
No 330
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=21.70 E-value=81 Score=19.88 Aligned_cols=22 Identities=14% Similarity=-0.073 Sum_probs=17.5
Q ss_pred EEEEeeCCCcHHHHHHHhhhhh
Q 040720 3 LLLMWKAPTPLINVKAKIQDKE 24 (77)
Q Consensus 3 ~~~~v~~~~tv~~lK~~i~~~~ 24 (77)
-.+.+.++||.++|..++.+.+
T Consensus 239 ~~v~i~~~dt~~~L~~r~~~~e 260 (288)
T 3obi_A 239 DVERISHRDTPADLVRKGRDIE 260 (288)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 3567889999999999887653
No 331
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=21.11 E-value=1.3e+02 Score=20.82 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=24.2
Q ss_pred eEEEEeeCCCcHHHHHHHhhhhhCCCc
Q 040720 2 RLLLMWKAPTPLINVKAKIQDKEGIPP 28 (77)
Q Consensus 2 ~~~~~v~~~~tv~~lK~~i~~~~gi~~ 28 (77)
++.+.++++.|+.+|=..|+...|+..
T Consensus 15 t~e~~vd~~tt~~ell~~V~~~LgL~e 41 (575)
T 2i1j_A 15 ELEFAIQQTTTGKQLFDQVVKTIGLRE 41 (575)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCC
T ss_pred eEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 467889999999999999999999963
No 332
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=20.44 E-value=1.1e+02 Score=16.09 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=37.3
Q ss_pred HHHHHHHhhhhhCCCcccceEEE------------------EEEecCCccHHHHH-------HHHhhccCCCccceEEEE
Q 040720 13 LINVKAKIQDKEGIPPDQQRLIT------------------TLEVKSSDTINNVK-------SKIQDKEGIPPDQQRLIF 67 (77)
Q Consensus 13 v~~lK~~i~~~~gi~~~~q~L~~------------------~~~v~~~~tv~~lK-------~~i~~~~gip~~~q~l~~ 67 (77)
...+-+.+++..|.|.+.+...+ .+.+-...+.++-+ ..+++..|+|++...+.|
T Consensus 20 ~~~~~~~l~~~lgkP~~~~~v~~~~~~~~~~~g~~~~~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~ 99 (119)
T 2os5_A 20 EERLTDLLAESMNKPRNRIAIEVLAGQRITHGASRNPVAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDKVIITY 99 (119)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSCEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred HHHHHHHHHHHHCcChHHEEEEEECCccEEEcCCCCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEE
Confidence 55777777888999988776665 22333334544333 445556799988877766
Q ss_pred CCeE
Q 040720 68 AGIN 71 (77)
Q Consensus 68 ~g~~ 71 (77)
..-.
T Consensus 100 ~e~~ 103 (119)
T 2os5_A 100 FDLQ 103 (119)
T ss_dssp EECC
T ss_pred EECC
Confidence 5433
No 333
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=20.21 E-value=1.1e+02 Score=16.19 Aligned_cols=22 Identities=5% Similarity=-0.037 Sum_probs=15.9
Q ss_pred HHHHHHhhhhhCCCcccceEEE
Q 040720 14 INVKAKIQDKEGIPPDQQRLIT 35 (77)
Q Consensus 14 ~~lK~~i~~~~gi~~~~q~L~~ 35 (77)
+.+-+.+++..|||+++.-+.|
T Consensus 78 ~~i~~~l~~~Lgi~~~RiyI~f 99 (117)
T 3kan_A 78 AHFFEFLTKELALGQDRILIRF 99 (117)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHHHHHHHhCcCcCeEEEEE
Confidence 4555667778999998876654
No 334
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.11 E-value=82 Score=14.58 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=13.5
Q ss_pred CCcHHHHHHHhhhhhCCCc
Q 040720 10 PTPLINVKAKIQDKEGIPP 28 (77)
Q Consensus 10 ~~tv~~lK~~i~~~~gi~~ 28 (77)
..||.+||+.+.. .|+|.
T Consensus 12 klkV~eLK~eLk~-RgL~~ 29 (50)
T 1zrj_A 12 RLKVNELREELQR-RGLDT 29 (50)
T ss_dssp GSCHHHHHHHHHH-TTCCC
T ss_pred HCcHHHHHHHHHH-cCCCC
Confidence 4789999997665 66664
Done!