BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040722
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 190/318 (59%), Gaps = 11/318 (3%)
Query: 40 ISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQG 99
++ I+ LFTHL C AD+NS T Q+++S ++ + + F TV++ NPS+ LLSIG G
Sbjct: 18 VTDIDSSLFTHLFCAFADLNSQTNQVTVS-SANQPKFSTFTQTVQRRNPSVKTLLSIGGG 76
Query: 100 MDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEW 159
+ + + Y+SM N + RKSFIDSSIR+AR YGF GLD W P+++T+M N G L EW
Sbjct: 77 I-ADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSSATEMTNFGTLLREW 135
Query: 160 RIAATKLEAKNSSRQQSQLILTARFLYSPPANS--YLLNSIQRNLNWVHAVTASYYEPVS 217
R A + A+ SS + +L+L A YS S Y ++++ +L+WV+ + +Y P
Sbjct: 136 RSA---VVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMAYDFYGPGW 192
Query: 218 TNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGI 277
+ T PPAAL+ S+ G S D ++WI+ GL A K V+G P+YGYAW L +
Sbjct: 193 SRVTGPPAALFDPSNAG--PSGDAGTRSWIQAGLPAKKAVLGFPYYGYAWRLTNANSHSY 250
Query: 278 GAAATGPALHGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFSTRTIWFGFDDVEAVR 337
A TG A+ +G + Y +I+ +I + +YN+ V +Y T W G+DD +++
Sbjct: 251 YAPTTGAAISPDGSIGYGQIRKFIVD--NGATTVYNSTVVGDYCYAGTNWIGYDDNQSIV 308
Query: 338 AKIAYAKEKRLLGYYVWR 355
K+ YAK++ LLGY+ W
Sbjct: 309 TKVRYAKQRGLLGYFSWH 326
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 128/334 (38%), Positives = 184/334 (55%), Gaps = 16/334 (4%)
Query: 27 IRVGYLNLSKVSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKE 86
++ GY ++ I+ LFTHL C AD+N QL +S P + + +F TV+++
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIIS-PENQDSFRQFTSTVQRK 62
Query: 87 NPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS 146
NPS+ LSI G N + Y M R + RKSFIDSSIR+AR GF GLD W P ++
Sbjct: 63 NPSVKTFLSIAGGR-ANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLSA 121
Query: 147 TDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN--SYLLNSIQRNLNW 204
DM N+G L +EWR A EA+NS R + L+LTA SP N +Y + S+ RNL+W
Sbjct: 122 ADMTNLGTLLNEWR-TAINTEARNSGR--AALLLTAAVSNSPRVNGLNYPVESLARNLDW 178
Query: 205 VHAVTASYYEPV-STNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFY 263
++ + +Y P S + T A L+ + S + AWI+ G+ KLV+G+PFY
Sbjct: 179 INLMAYDFYGPNWSPSQTNSHAQLFDPVN---HVSGSDGINAWIQAGVPTKKLVLGIPFY 235
Query: 264 GYAWTLVKPEDNGIGAAATGPALHG---NGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNY 320
GYAW LV +G+ A A G + G +G +TY I++YI +YN V +Y
Sbjct: 236 GYAWRLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNATIVGDY 293
Query: 321 FSTRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVW 354
+ + W +DD + VR K+ Y K + LLGY+ W
Sbjct: 294 CYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAW 327
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 128/334 (38%), Positives = 184/334 (55%), Gaps = 16/334 (4%)
Query: 27 IRVGYLNLSKVSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKE 86
++ GY ++ I+ LFTHL C AD+N QL +S P + + +F TV+++
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIIS-PENQDSFRQFTSTVQRK 62
Query: 87 NPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS 146
NPS+ LSI G N + Y M R + RKSFIDSSIR+AR GF GLD W P ++
Sbjct: 63 NPSVKTFLSIAGGR-ANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLSA 121
Query: 147 TDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN--SYLLNSIQRNLNW 204
DM N+G L +EWR A EA+NS R + L+LTA SP N +Y + S+ RNL+W
Sbjct: 122 ADMTNLGTLLNEWR-TAINTEARNSGR--AALLLTAAVSNSPRVNGLNYPVESLARNLDW 178
Query: 205 VHAVTASYYEPV-STNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFY 263
++ + +Y P S + T A L+ + S + AWI+ G+ KLV+G+PFY
Sbjct: 179 INLMAYDFYGPNWSPSQTNSHAQLFDPVN---HVSGSDGINAWIQAGVPTKKLVLGIPFY 235
Query: 264 GYAWTLVKPEDNGIGAAATGPALHG---NGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNY 320
GYAW LV +G+ A A G + G +G +TY I++YI +YN V +Y
Sbjct: 236 GYAWRLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNATIVGDY 293
Query: 321 FSTRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVW 354
+ + W +DD + VR K+ Y K + LLGY+ W
Sbjct: 294 CYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAW 327
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 162/327 (49%), Gaps = 37/327 (11%)
Query: 47 LFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSI 106
L THLI A + T +QLS + +D+ +F + ++K NP + LL+IG G +
Sbjct: 29 LCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNPKLKTLLAIG-GWNFGTQK 84
Query: 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166
++ MV +++R++F++S+IR R Y F GLD W P + D+ R
Sbjct: 85 FTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSP-----AVDKERFTTLVQ 139
Query: 167 EAKNSSRQQSQLILTARFLYS---PPANSYL-----LNSIQRNLNWVHAVTASYY---EP 215
+ N+ +Q++Q R L S P +Y+ ++ I +NL++V+ + ++ E
Sbjct: 140 DLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEK 199
Query: 216 VSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDN 275
V T +P S + + D ++ W+E+G A KL++G+P YG ++TL D
Sbjct: 200 V-TGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTPASKLILGMPTYGRSFTLASSSDT 258
Query: 276 GIGAAATGPALHG-----NGLVTYKEI---KNYIKNYCPNVQVMYNTIYVMNYFSTRTIW 327
+GA ATG G G++ Y E+ K K + +V Y I+ N W
Sbjct: 259 RVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVPY--IFRDNQ------W 310
Query: 328 FGFDDVEAVRAKIAYAKEKRLLGYYVW 354
GFDDVE+ + K++Y K+K L G VW
Sbjct: 311 VGFDDVESFKTKVSYLKQKGLGGAMVW 337
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 162/327 (49%), Gaps = 37/327 (11%)
Query: 47 LFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSI 106
L THLI A + T +QLS + +D+ +F + ++K NP + LL+IG G +
Sbjct: 29 LCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNPKLKTLLAIG-GWNFGTQK 84
Query: 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166
++ MV +++R++F++S+IR R Y F GLD W P + D+ R
Sbjct: 85 FTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSP-----AVDKERFTTLVQ 139
Query: 167 EAKNSSRQQSQLILTARFLYS---PPANSYL-----LNSIQRNLNWVHAVTASYY---EP 215
+ N+ +Q++Q R L S P +Y+ ++ I +NL++V+ + ++ E
Sbjct: 140 DLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEK 199
Query: 216 VSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDN 275
V T +P S + + D ++ W+++G A KL++G+P YG ++TL D
Sbjct: 200 V-TGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDT 258
Query: 276 GIGAAATGPALHG-----NGLVTYKEI---KNYIKNYCPNVQVMYNTIYVMNYFSTRTIW 327
+GA ATG G G++ Y E+ K K + +V Y I+ N W
Sbjct: 259 RVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVPY--IFRDNQ------W 310
Query: 328 FGFDDVEAVRAKIAYAKEKRLLGYYVW 354
GFDDVE+ + K++Y K+K L G VW
Sbjct: 311 VGFDDVESFKTKVSYLKQKGLGGAMVW 337
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 162/327 (49%), Gaps = 37/327 (11%)
Query: 47 LFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSI 106
L THLI A + T +QLS + +D+ +F + ++K NP + LL+IG G +
Sbjct: 29 LCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNPKLKTLLAIG-GWNFGTQK 84
Query: 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166
++ MV +++R++F++S+IR R Y F GLD W P + D+ R
Sbjct: 85 FTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSP-----AVDKERFTTLVQ 139
Query: 167 EAKNSSRQQSQLILTARFLYS---PPANSYL-----LNSIQRNLNWVHAVTASYY---EP 215
+ N+ +Q++Q R L S P +Y+ ++ I +NL++V+ + ++ E
Sbjct: 140 DLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEK 199
Query: 216 VSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDN 275
V T +P S + + D ++ W+++G A KL++G+P YG ++TL D
Sbjct: 200 V-TGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDT 258
Query: 276 GIGAAATGPALHG-----NGLVTYKEI---KNYIKNYCPNVQVMYNTIYVMNYFSTRTIW 327
+GA ATG G G++ Y E+ K K + +V Y I+ N W
Sbjct: 259 RVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVPY--IFRDNQ------W 310
Query: 328 FGFDDVEAVRAKIAYAKEKRLLGYYVW 354
GFDDVE+ + K++Y K+K L G VW
Sbjct: 311 VGFDDVESFKTKVSYLKQKGLGGAMVW 337
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 162/327 (49%), Gaps = 37/327 (11%)
Query: 47 LFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSI 106
L THLI A + T +QLS + +D+ +F + ++K NP + LL+IG G +
Sbjct: 29 LCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNPKLKTLLAIG-GWNFGTQK 84
Query: 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166
++ MV +++R++F++S+IR R Y F GLD W P + D+ R
Sbjct: 85 FTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSP-----AVDKERFTTLVQ 139
Query: 167 EAKNSSRQQSQLILTARFLYS---PPANSYL-----LNSIQRNLNWVHAVTASYY---EP 215
+ N+ +Q++Q R L S P +Y+ ++ I +NL++V+ + ++ E
Sbjct: 140 DLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEK 199
Query: 216 VSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDN 275
V T +P S + + D ++ W+++G A KL++G+P YG ++TL D
Sbjct: 200 V-TGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDT 258
Query: 276 GIGAAATGPALHG-----NGLVTYKEI---KNYIKNYCPNVQVMYNTIYVMNYFSTRTIW 327
+GA ATG G G++ Y E+ K K + +V Y I+ N W
Sbjct: 259 RVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVPY--IFRDNQ------W 310
Query: 328 FGFDDVEAVRAKIAYAKEKRLLGYYVW 354
GFDDVE+ + K++Y K+K L G VW
Sbjct: 311 VGFDDVESFKTKVSYLKQKGLGGAMVW 337
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 164/331 (49%), Gaps = 37/331 (11%)
Query: 43 INYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDT 102
++ L THLI A + T +QLS + +D+ +F + ++K NP + LL+IG G +
Sbjct: 25 LDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNPKLKTLLAIG-GWNF 80
Query: 103 NYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIA 162
++ MV +++R++F++S+IR R Y F GLD W P + D+ R
Sbjct: 81 GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSP-----AVDKERFT 135
Query: 163 ATKLEAKNSSRQQSQLILTARFLYS---PPANSYL-----LNSIQRNLNWVHAVTASYY- 213
+ N+ +Q++Q R L S P +Y+ ++ I +NL++V+ + ++
Sbjct: 136 TLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHG 195
Query: 214 --EPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVK 271
E V T +P S + + D ++ W+++G A KL++G+P YG ++TL
Sbjct: 196 SWEKV-TGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLAS 254
Query: 272 PEDNGIGAAATGPALHG-----NGLVTYKEI---KNYIKNYCPNVQVMYNTIYVMNYFST 323
D +GA ATG G G++ Y E+ K K + +V Y I+ N
Sbjct: 255 SSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVPY--IFRDNQ--- 309
Query: 324 RTIWFGFDDVEAVRAKIAYAKEKRLLGYYVW 354
W GFDDVE+ + K++Y K+K L G VW
Sbjct: 310 ---WVGFDDVESFKTKVSYLKQKGLGGAMVW 337
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 139/286 (48%), Gaps = 21/286 (7%)
Query: 80 VDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFA 139
+++++ +NP + ILLSIG G + MV +S+ R FI+S I R + F GLD +
Sbjct: 60 INSLKTKNPKLKILLSIG-GYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVS 118
Query: 140 WTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPA--NSYLLNS 197
W P+ + L+ + A + + + +L+LTA NSY +
Sbjct: 119 WIYPDQKENTHFTVLIHE----LAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEK 174
Query: 198 IQRNLNWVHAVT----ASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSA 253
+ ++L++++ ++ S+ +P+ T +P + + + + + WI +G+ +
Sbjct: 175 LAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPS 234
Query: 254 DKLVMGLPFYGYAWTLVKPEDNGIGAAATGPALHG-----NGLVTYKEIKNYIKNYCPNV 308
+K+VMG+P YG+++TL E +GA A+GP G +G + Y EI ++K
Sbjct: 235 EKVVMGIPTYGHSFTLASAETT-VGAPASGPGAAGPITESSGFLAYYEICQFLK----GA 289
Query: 309 QVMYNTIYVMNYFSTRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVW 354
++ + Y W G+DDV+++ K+ + K L G +W
Sbjct: 290 KITRLQDQQVPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIW 335
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 155/317 (48%), Gaps = 23/317 (7%)
Query: 47 LFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSI 106
L TH+I A+I++ + +D + ++T++ NP++ LLS+G G +
Sbjct: 29 LCTHIIYSFANISNDHID---TWEWNDVTLYGMLNTLKNRNPNLKTLLSVG-GWNFGSQR 84
Query: 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166
+S + N+ R++FI S R +GF GLD AW P D + L E + K
Sbjct: 85 FSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKQHFTTLIKEMKAEFIK- 142
Query: 167 EAKNSSRQQSQLILTARFLYSPPA--NSYLLNSIQRNLNWVHAVTASYYEP--VSTNFTA 222
EA+ +Q L+L+A +SY + I ++L+++ +T ++ +T +
Sbjct: 143 EAQPGKKQ---LLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTYDFHGAWRGTTGHHS 199
Query: 223 PPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAAT 282
P +S +TD + + G A KLVMG+P +G ++TL E G+GA +
Sbjct: 200 PLFRGQEDASPDRFSNTDYAVGYMLRLGAPASKLVMGIPTFGRSFTLASSE-TGVGAPIS 258
Query: 283 GPALHGN-----GLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFSTRTIWFGFDDVEAVR 337
GP + G G + Y EI ++++ + +++ + Y + W G+DD E+V+
Sbjct: 259 GPGIPGRFTKEAGTLAYYEICDFLRGATVH-RILGQQV---PYATKGNQWVGYDDQESVK 314
Query: 338 AKIAYAKEKRLLGYYVW 354
+K+ Y K+++L G VW
Sbjct: 315 SKVQYLKDRQLAGAMVW 331
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 150/324 (46%), Gaps = 21/324 (6%)
Query: 43 INYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDT 102
IN L THLI A + + ++ +D + + + ++ +N + LL+IG G +
Sbjct: 25 INPCLCTHLIYAFAGMQNNEI---TTIEWNDVTLYQAFNGLKNKNSQLKTLLAIG-GWNF 80
Query: 103 NYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT----STDMFNVGLLFDE 158
+ +++MV +R++FI S I+ R Y F GLDF W P + D +L E
Sbjct: 81 GTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQE 140
Query: 159 WRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLNSIQRNLNWVHAVTASYYEPVST 218
R A + EAK ++ + + S + Y + + + L+++H +T +
Sbjct: 141 MR-EAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWE- 198
Query: 219 NFTAPPAALYG--SSSGGFAR-STDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDN 275
+T + LY + +G A + D V+ W + G A+KL++G P YG+ + L P +
Sbjct: 199 GYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNT 258
Query: 276 GIGAAATGPALHG-----NGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFSTRTIWFGF 330
GIGA +G G +G+ Y EI ++KN ++ + Y +W G+
Sbjct: 259 GIGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNVWVGY 315
Query: 331 DDVEAVRAKIAYAKEKRLLGYYVW 354
D+V++ K + K + G VW
Sbjct: 316 DNVKSFDIKAQWLKHNKFGGAMVW 339
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 150/324 (46%), Gaps = 21/324 (6%)
Query: 43 INYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDT 102
IN L THLI A + + ++ +D + + + ++ +N + LL+IG G +
Sbjct: 29 INPCLCTHLIYAFAGMQNNEI---TTIEWNDVTLYQAFNGLKNKNSQLKTLLAIG-GWNF 84
Query: 103 NYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT----STDMFNVGLLFDE 158
+ +++MV +R++FI S I+ R Y F GLDF W P + D +L E
Sbjct: 85 GTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQE 144
Query: 159 WRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLNSIQRNLNWVHAVTASYYEPVST 218
R A + EAK ++ + + S + Y + + + L+++H +T +
Sbjct: 145 MR-EAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWE- 202
Query: 219 NFTAPPAALYG--SSSGGFAR-STDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDN 275
+T + LY + +G A + D V+ W + G A+KL++G P YG+ + L P +
Sbjct: 203 GYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNT 262
Query: 276 GIGAAAT-----GPALHGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFSTRTIWFGF 330
GIGA + GP +G+ Y EI ++KN ++ + Y +W G+
Sbjct: 263 GIGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNVWVGY 319
Query: 331 DDVEAVRAKIAYAKEKRLLGYYVW 354
D++++ K + K + G VW
Sbjct: 320 DNIKSFDIKAQWLKHNKFGGAMVW 343
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 151/328 (46%), Gaps = 29/328 (8%)
Query: 43 INYDLFTHLICPSADI--NSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGM 100
I+ L THLI A + N TY L + + ++ ++ +N + LL+IG G
Sbjct: 25 IDPCLCTHLIYAFAGMQNNEITYTHEQDL-----RDYEALNGLKDKNTELKTLLAIG-GW 78
Query: 101 DTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT----STDMFNVGLLF 156
+ +S+MV +R+ FI S IR R Y F GL+ W P + D +L
Sbjct: 79 KFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLV 138
Query: 157 DEWRIAATKLEAKNSSRQQSQLILTARF--LYSPPANSYLLNSIQRNLNWVHAVTASYYE 214
E R A E ++ + +L+LT+ + + Y + + ++L+++ +T ++
Sbjct: 139 KEMRKA---FEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHD 195
Query: 215 PVSTNFTAPPAALYGS--SSGGFAR-STDQVLKAWIERGLSADKLVMGLPFYGYAWTLVK 271
P +T + LY S G A + D ++ W + G +++KL++G P YG+ + L
Sbjct: 196 P-KDGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLIVGFPAYGHTFILSD 254
Query: 272 PEDNGIGAA--ATGPA---LHGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFSTRTI 326
P GIGA +TGP +GL+ Y E+ ++ V ++ + Y
Sbjct: 255 PSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNEGATEV---WDAPQEVPYAYQGNE 311
Query: 327 WFGFDDVEAVRAKIAYAKEKRLLGYYVW 354
W G+D+V + + K + K+ L G VW
Sbjct: 312 WVGYDNVRSFKLKAQWLKDNNLGGAVVW 339
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 146/322 (45%), Gaps = 34/322 (10%)
Query: 47 LFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSI 106
L TH+I A+I++ + +D + ++T++ NP + LLS+G G +
Sbjct: 29 LCTHVIYSFANISNNEID---TWEWNDVTLYDTLNTLKNRNPKLKTLLSVG-GWNFGPER 84
Query: 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166
+S++ + R++FI S R +GF GLD AW P L + K
Sbjct: 85 FSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRRDKRHLTAL------VKEMKA 138
Query: 167 E-AKNSSRQQSQLILTARFLYSPPA--NSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAP 223
E A+ + +L+L+A A Y + I R+L+++ +T ++
Sbjct: 139 EFAREAQAGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQT-VGH 197
Query: 224 PAALYGSSSGGFAR--STDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAA 281
+ L+ +S G +R + D + + G A+KLVMG+P +G ++TL + +G GA
Sbjct: 198 HSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTDG-GAPI 256
Query: 282 TGPALHG-----NGLVTYKEIKNYIKNYCP----NVQVMYNTIYVMNYFSTRTIWFGFDD 332
+GP + G G++ Y EI +++ + QV Y T W +DD
Sbjct: 257 SGPGIPGRFTKEKGILAYYEICDFLHGATTHRFRDQQVPYAT--------KGNQWVAYDD 308
Query: 333 VEAVRAKIAYAKEKRLLGYYVW 354
E+V+ K Y K ++L G VW
Sbjct: 309 QESVKNKARYLKNRQLAGAMVW 330
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 144/320 (45%), Gaps = 30/320 (9%)
Query: 47 LFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSI 106
L TH+I A+I++ + +D + ++T++ NP++ LLS+G G +
Sbjct: 29 LCTHVIYSFANISNNEID---TWEWNDVTLYDTLNTLKNRNPNLKTLLSVG-GWNFGSER 84
Query: 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166
+S + + R++FI S R +GF GLD AW P D ++ L E + +
Sbjct: 85 FSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGWR-DKRHLTTLVKEMKAEFVR- 142
Query: 167 EAKNSSRQQSQLILTARFLYSPPA--NSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPP 224
EA+ + QL+L+A A Y + I R+L+++ +T ++
Sbjct: 143 EAQAGT---EQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHS 199
Query: 225 AALYGSSSGGFARS-TDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATG 283
G+S G S D + + G A+KLVMG+P +G ++TL +GA +G
Sbjct: 200 PLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSSTR-VGAPISG 258
Query: 284 PALHGN-----GLVTYKEIKNYIKNYCP----NVQVMYNTIYVMNYFSTRTIWFGFDDVE 334
P + G G++ Y EI +++ + QV Y T W +DD E
Sbjct: 259 PGIPGQFTKEKGILAYYEICDFLHGATTHRFRDQQVPYAT--------KGNQWVAYDDQE 310
Query: 335 AVRAKIAYAKEKRLLGYYVW 354
+V+ K Y K ++L G VW
Sbjct: 311 SVKNKARYLKNRQLAGAMVW 330
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 150/321 (46%), Gaps = 32/321 (9%)
Query: 47 LFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSI 106
L TH+I A+I++ + +D + ++T++ NP + LLS+G G +
Sbjct: 29 LCTHVIYSFANISNNEID---TWEWNDVTLYDTLNTLKNRNPKLKTLLSVG-GWNFGPER 84
Query: 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166
+S++ + R++FI S R +GF GLD AW P D ++ L E + +
Sbjct: 85 FSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPG-RRDKRHLTTLVKEMKAEFIR- 142
Query: 167 EAKNSSRQQSQLILTARFLYSPPA--NSYLLNSIQRNLNWVHAVTASYYEP--VSTNFTA 222
EA+ + QL+L+A A Y + I R+L+++ +T ++ + +
Sbjct: 143 EAQAGT---EQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHS 199
Query: 223 PPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAAT 282
P A +S F+ + D + + G A+KLVMG+P +G ++TL + + +GA +
Sbjct: 200 PLFAGNEDASSRFS-NADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTD-VGAPVS 257
Query: 283 GPALHG-----NGLVTYKEIKNYIKNYCP----NVQVMYNTIYVMNYFSTRTIWFGFDDV 333
GP + G G++ Y EI +++ + QV Y T W +DD
Sbjct: 258 GPGVPGRFTKEKGILAYYEICDFLHGATTHRFRDQQVPYAT--------KGNQWVAYDDQ 309
Query: 334 EAVRAKIAYAKEKRLLGYYVW 354
E+V+ K Y K ++L G VW
Sbjct: 310 ESVKNKARYLKNRQLAGAMVW 330
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 145/320 (45%), Gaps = 30/320 (9%)
Query: 47 LFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSI 106
L TH+I A+I++ + +D + ++T++ NP++ LLS+G G +
Sbjct: 29 LCTHVIYSFANISNNEID---TWEWNDVTLYDTLNTLKNRNPNLKTLLSVG-GWNFGSER 84
Query: 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166
+S + + R++FI S R +GF GLD AW P D ++ L E + +
Sbjct: 85 FSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGWR-DKRHLTTLVKEMKAEFVR- 142
Query: 167 EAKNSSRQQSQLILTARFLYSPPA--NSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPP 224
EA+ + QL+L+A A Y + I R+L+++ +T ++
Sbjct: 143 EAQAGT---EQLLLSAAVPAGKIAIDRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHS 199
Query: 225 AALYGSSSGGFARS-TDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATG 283
G+S G S D + + G A+KLVMG+P +G ++TL + + +GA +G
Sbjct: 200 PLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSKTD-VGAPISG 258
Query: 284 PALHGN-----GLVTYKEIKNYIKNYCP----NVQVMYNTIYVMNYFSTRTIWFGFDDVE 334
P + G G + Y EI +++ + QV Y T W +DD E
Sbjct: 259 PGIPGQFTKEKGTLAYYEICDFLHGATTHRFRDQQVPYAT--------KGNQWVAYDDQE 310
Query: 335 AVRAKIAYAKEKRLLGYYVW 354
+V+ K Y K ++L G VW
Sbjct: 311 SVKNKARYLKNRQLAGAMVW 330
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 150/321 (46%), Gaps = 32/321 (9%)
Query: 47 LFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSI 106
L TH+I A+I++ + +D + ++T++ NP++ LLS+G G +
Sbjct: 29 LCTHVIYSFANISNNEID---TWEWNDVTLYDTLNTLKNRNPNLKTLLSVG-GWNFGPQR 84
Query: 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166
+S + + R++FI S R +GF GLD AW P D ++ L E + +
Sbjct: 85 FSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPG-RRDKRHLTTLVKEMKAEFIR- 142
Query: 167 EAKNSSRQQSQLILTARFLYSPPA--NSYLLNSIQRNLNWVHAVTASYYEP--VSTNFTA 222
EA+ + QL+L+A A Y + I R+L+++ +T ++ + +
Sbjct: 143 EAQAGT---EQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHS 199
Query: 223 PPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAAT 282
P +S F+ + D + + G A+KLVMG+P +G ++TL + + +GA +
Sbjct: 200 PLFRGQEDASSRFS-NADYAVSYMLRLGAPANKLVMGIPTFGKSFTLASSKTD-VGAPVS 257
Query: 283 GPALHGN-----GLVTYKEIKNYIKNYCP----NVQVMYNTIYVMNYFSTRTIWFGFDDV 333
GP + G G++ Y EI ++++ + QV Y T W +DD
Sbjct: 258 GPGIPGQFTKEKGILAYYEICDFLQGATTHRFRDQQVPYAT--------KGNQWVAYDDQ 309
Query: 334 EAVRAKIAYAKEKRLLGYYVW 354
E+V+ K Y K ++L G VW
Sbjct: 310 ESVKNKARYLKNRQLAGAMVW 330
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 32/321 (9%)
Query: 47 LFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSI 106
L TH+I A+I++ + +D + ++T++ NP + LLS+G G +
Sbjct: 29 LCTHVIYSFANISNNEID---TWEWNDVTLYDTLNTLKNRNPKLKTLLSVG-GWNFGPER 84
Query: 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166
+S + + R++FI S R +GF GLD AW P D ++ L E +
Sbjct: 85 FSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPG-RRDKRHLTALVKEMKAEF--- 140
Query: 167 EAKNSSRQQSQLILTARFLYSPPA--NSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPP 224
A+ + +L+L+A A Y + I R+L+++ +T ++
Sbjct: 141 -AREAQAGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQT-VGHH 198
Query: 225 AALYGSSSGGFAR--STDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAAT 282
+ L+ +S +R + D + + G A+KLVMG+P +G ++TL + +G GA +
Sbjct: 199 SPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTDG-GAPIS 257
Query: 283 GPALHG-----NGLVTYKEIKNYIKNYCP----NVQVMYNTIYVMNYFSTRTIWFGFDDV 333
GP + G G++ Y EI +++ + QV Y T W +DD
Sbjct: 258 GPGIPGRFTKEKGILAYYEICDFLHGATTHRFRDQQVPYAT--------KGNQWVAYDDQ 309
Query: 334 EAVRAKIAYAKEKRLLGYYVW 354
E+V+ K Y K ++L G VW
Sbjct: 310 ESVKNKARYLKNRQLAGAMVW 330
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 148/321 (46%), Gaps = 32/321 (9%)
Query: 47 LFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSI 106
L TH+I A+I++ + +D + ++T++ NP++ LLS+G G +
Sbjct: 29 LCTHVIYSFANISNNEID---TWEWNDVTLYDTLNTLKNRNPNLKTLLSVG-GWNYGSQR 84
Query: 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166
+S + + R++FI S R +GF GLD AW P D ++ L E + +
Sbjct: 85 FSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLWPGWR-DKRHLTTLVKEMKAEFVR- 142
Query: 167 EAKNSSRQQSQLILTARFLYSPPA--NSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPP 224
EA+ + QL+L+A A Y + I R+L+++ +T ++
Sbjct: 143 EAQAGT---EQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHS 199
Query: 225 AALYGS--SSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAAT 282
G+ +S F+ + D + + G A+KLVMG+P +G ++TL + + +GA +
Sbjct: 200 PLFRGNEDASSRFS-NADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSKTD-VGAPIS 257
Query: 283 GPALHG-----NGLVTYKEIKNYIKNYCP----NVQVMYNTIYVMNYFSTRTIWFGFDDV 333
GP + G G++ Y EI +++ + QV Y T W +DD
Sbjct: 258 GPGIPGRFTKWKGILAYYEICDFLHGATTHRFRDQQVPYAT--------KGNQWVAYDDQ 309
Query: 334 EAVRAKIAYAKEKRLLGYYVW 354
E+V+ K Y K ++L G VW
Sbjct: 310 ESVKNKARYLKNRQLAGAMVW 330
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 147/321 (45%), Gaps = 32/321 (9%)
Query: 47 LFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSI 106
L TH+I A+I++ + +D + ++T++ NP + LLS+G G +
Sbjct: 29 LCTHVIYTFANISNNEID---TWEWNDVTLYDTLNTLKNRNPKLKTLLSVG-GWNFGPER 84
Query: 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166
+S + + R++FI S R +GF GLD AW P D ++ L E + +
Sbjct: 85 FSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPG-RRDKRHLTTLVKEMKAEFIR- 142
Query: 167 EAKNSSRQQSQLILTARFLYSPPA--NSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPP 224
EA+ + QL+L+A A Y + I R+L+++ +T ++
Sbjct: 143 EAQAGT---EQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHS 199
Query: 225 AALYGS--SSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAAT 282
G+ +S F+ + D + + G A+KLVMG+P +G ++TL + + +GA +
Sbjct: 200 PLFRGNEDASSRFS-NADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTD-VGAPVS 257
Query: 283 GPALHG-----NGLVTYKEIKNYIKNYCP----NVQVMYNTIYVMNYFSTRTIWFGFDDV 333
GP + G G++ Y EI +++ + QV Y T W +DD
Sbjct: 258 GPGIPGRFTKEKGILAYYEICDFLHGATTHRFRDQQVPYAT--------KGNQWVAYDDQ 309
Query: 334 EAVRAKIAYAKEKRLLGYYVW 354
E+V+ K Y K ++L G VW
Sbjct: 310 ESVKNKARYLKNRQLAGAMVW 330
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 144/322 (44%), Gaps = 34/322 (10%)
Query: 47 LFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSI 106
L TH+I A+I++ + +D + ++T++ NP + LLS+G G +
Sbjct: 29 LCTHVIYSFANISNNEID---TWEWNDVTLYDTLNTLKNRNPKLKTLLSVG-GWNFGPER 84
Query: 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166
+S + + R++FI S R +GF GLD AW P L + K
Sbjct: 85 FSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRRDKRHLTAL------VKEMKA 138
Query: 167 E-AKNSSRQQSQLILTARFLYSPPA--NSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAP 223
E A+ + +L+L+A A Y + I R+L+++ +T ++
Sbjct: 139 EFAREAQAGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQT-VGH 197
Query: 224 PAALYGSSSGGFAR--STDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAA 281
+ L+ +S +R + D + + G A+KLVMG+P +G ++TL + + +GA
Sbjct: 198 HSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTD-VGAPI 256
Query: 282 TGPALHG-----NGLVTYKEIKNYIKNYCP----NVQVMYNTIYVMNYFSTRTIWFGFDD 332
+GP + G G++ Y EI +++ + QV Y T W +DD
Sbjct: 257 SGPGIPGRFTKEKGILAYYEICDFLHGATTHRFRDQQVPYAT--------KGNQWVAYDD 308
Query: 333 VEAVRAKIAYAKEKRLLGYYVW 354
E+V+ K Y K ++L G VW
Sbjct: 309 QESVKNKARYLKNRQLAGAMVW 330
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 127/306 (41%), Gaps = 46/306 (15%)
Query: 80 VDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFA 139
++ +++ NP++ ++S+G +N +S + ++ R+ F +S++ R Y F G+D
Sbjct: 113 LNKLKQTNPNLKTIISVGGWTWSNR--FSDVAATAATREVFANSAVDFLRKYNFDGVDLD 170
Query: 140 WTAPNTS---------TDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPA 190
W P + D N LL + R KL+A + + L+ A + A
Sbjct: 171 WEYPVSGGLDGNSKRPEDKQNYTLLLSKIR---EKLDAAGAVDGKKYLLTIASGASATYA 227
Query: 191 NSYLLNSIQRNLNWVHAVTASY---------------YEPVSTNFTAPPAALYGSSSGGF 235
+ L I ++W++ +T + Y+P ++ P A + ++G
Sbjct: 228 ANTELAKIAAIVDWINIMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQ 287
Query: 236 ARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPALHGN---GLV 292
++ G+ A KLV+G+PFYG W NG TG + G G
Sbjct: 288 GH---------LDAGVPAAKLVLGVPFYGRGWDGCAQAGNGQYQTCTGGSSVGTWEAGSF 338
Query: 293 TYKEIK-NYI--KNYCPNVQVMYNTIYVMNYFSTRTIWFGFDDVEAVRAKIAYAKEKRLL 349
+ +++ NYI Y Y+ N + R I +DD E+V K AY K K L
Sbjct: 339 DFYDLEANYINKNGYTRYWNDTAKVPYLYNASNKRFI--SYDDAESVGYKTAYIKSKGLG 396
Query: 350 GYYVWR 355
G W
Sbjct: 397 GAMFWE 402
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 123/285 (43%), Gaps = 32/285 (11%)
Query: 83 VEKENPSITILLSIGQ-GMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWT 141
++K N S+ I+LSIG TN+ +S + R +F +++ + +GF G+D W
Sbjct: 98 LKKANRSLKIMLSIGGWTWSTNFPAAAS---TEATRATFAKTAVEFMKDWGFDGIDVDWE 154
Query: 142 APNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYL------- 194
P + TD N+ LL R A ++ QL + A P S+
Sbjct: 155 YPASETDANNMVLLLQRVRQELDSYSATYANGYHFQLSIAA-----PAGPSHYNVLKLAQ 209
Query: 195 LNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSAD 254
L S+ N+N + A ++ VS + T + SS F ST + A+I G+ A
Sbjct: 210 LGSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSNPSSTPF--STKAAVDAYIAAGVPAS 267
Query: 255 KLVMGLPFYGYAWTLVKPEDNGIGAAATGPALHGNGLVTYKEI----KNYIKNYCPNVQV 310
K+++G+P YG A V + G + G +G+ YK + I +
Sbjct: 268 KIILGMPIYGRA--FVGTDGPGKPYSTIGEGSWESGIWDYKVLPKAGATVITDSAAGATY 325
Query: 311 MYNTIYVMNYFSTRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355
Y++ S+RT+ +D + VR K++YAK L G W
Sbjct: 326 SYDS-------SSRTM-ISYDTPDMVRTKVSYAKGLGLGGSMFWE 362
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 135/331 (40%), Gaps = 67/331 (20%)
Query: 80 VDTVEKENPSITILLSIGQGMDTNY---SIYSSMVRNSSHRK-SFIDSSIRIARLYGFQG 135
V +++++ P + +LLS+G D + + Y ++ R+ FI S+ + + YGF G
Sbjct: 67 VTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDG 126
Query: 136 LDFAWTAPNTS---------------TDMFNVGLLFD------EWRIAATKLEAKNSSRQ 174
LD A+ P +F + D + + A + K+S R
Sbjct: 127 LDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDSLRA 186
Query: 175 QSQLILTARFLYSPPANS---YLLNSIQRNLNWVHAVTASYYEPV----STNFTAPPAAL 227
+L+ L P NS + + ++ +++V+ T + P +++AP
Sbjct: 187 DG-FLLSLTVL--PNVNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHP 243
Query: 228 YGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAA-----AT 282
GS + D ++ W+ +G ++K+ +G+ YG AW L K D+G+ +
Sbjct: 244 DGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKLTK--DSGLEGVPVVPETS 301
Query: 283 GPALHG-----NGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFS--------------- 322
GPA G GL++Y EI + N P Q + + S
Sbjct: 302 GPAPEGFQSQKPGLLSYAEICGKLSN--PQNQFLKGNESPLRRVSDPTKRFGGIAYRPVD 359
Query: 323 ---TRTIWFGFDDVEAVRAKIAYAKEKRLLG 350
T IW +DD ++ K AYA+ K L G
Sbjct: 360 GQITEGIWVSYDDPDSASNKAAYARVKNLGG 390
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 26/281 (9%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTA 142
++K+N ++ +LLSIG T ++ + RK+F +++++ + GF GLD W
Sbjct: 121 LKKQNRNLKVLLSIGGW--TYSPNFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEY 178
Query: 143 PNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYL-LNSIQRN 201
P + LL E R A A N+ Q +LT P L L + +
Sbjct: 179 PENDQQANDFVLLLKEVRTALDSYSAANAGGQ--HFLLTVASPAGPDKIKVLHLKDMDQQ 236
Query: 202 LNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFAR--STDQVLKAWIERGLSADKLVMG 259
L++ + + Y S+ + A +Y +S + +T L + G+ A+K+V+G
Sbjct: 237 LDFWNLMAYDYAGSFSS-LSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLG 295
Query: 260 LPFYGYAWTLV----KPEDNGIGAAATGPALHGNGLVTYKEI--KNYIKNYCPNVQVMYN 313
+P YG ++ KP NG+G + NG+ YK + ++ P++ Y
Sbjct: 296 MPLYGRSFANTDGPGKPY-NGVGQGS-----WENGVWDYKALPQAGATEHVLPDIMASY- 348
Query: 314 TIYVMNYFSTRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVW 354
+Y +T +D+ + K Y K L G W
Sbjct: 349 -----SYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWW 384
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 26/281 (9%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTA 142
++K+N ++ +LLSIG T ++ + RK+F +++++ + GF GLD W
Sbjct: 83 LKKQNRNLKVLLSIGGW--TYSPNFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEY 140
Query: 143 PNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYL-LNSIQRN 201
P + LL E R A A N+ Q +LT P L L + +
Sbjct: 141 PENDQQANDFVLLLREVRTALDSYSAANAGGQ--HFLLTVASPAGPDKIKVLHLKDMDQQ 198
Query: 202 LNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFAR--STDQVLKAWIERGLSADKLVMG 259
L++ + + Y S+ + A +Y +S + +T L + G+ A+K+V+G
Sbjct: 199 LDFWNLMAYDYAGSFSS-LSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLG 257
Query: 260 LPFYGYAWTLV----KPEDNGIGAAATGPALHGNGLVTYKEI--KNYIKNYCPNVQVMYN 313
+P YG ++ KP NG+G + NG+ YK + ++ P++ Y
Sbjct: 258 MPLYGRSFANTDGPGKPY-NGVGQGS-----WENGVWDYKALPQAGATEHVLPDIMASY- 310
Query: 314 TIYVMNYFSTRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVW 354
+Y +T +D+ + K Y K L G W
Sbjct: 311 -----SYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWW 346
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 16/221 (7%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTA 142
++K N ++ LLSIG T + + RK F D+S+++ + GF G+D W
Sbjct: 80 LKKNNRNLKTLLSIGGW--TYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWEY 137
Query: 143 PNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPA-NSYLLNSIQRN 201
P + LL R A AK+ + ++ +LT P N L + +
Sbjct: 138 PEDEKQANDFVLLLKACREALDAYSAKHPNGKK--FLLTIASPAGPQNYNKLKLAEMDKY 195
Query: 202 LNWVHAVTASY---YEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVM 258
L++ + + + ++ VS + + + S F S+D+ +K +I+ G+ A+K+V+
Sbjct: 196 LDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPF--SSDKAVKDYIKAGVPANKIVL 253
Query: 259 GLPFYGYAWTLVKPEDNGIGAA--ATGPALHGNGLVTYKEI 297
G+P YG A+ +GIG + G NG+ YK++
Sbjct: 254 GMPLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKDM 290
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 16/221 (7%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTA 142
++K N ++ LLSIG T + + RK F D+S+++ + GF G+D W
Sbjct: 80 LKKNNRNLKTLLSIGGW--TYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWQY 137
Query: 143 PNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPA-NSYLLNSIQRN 201
P + LL R A AK+ + ++ +LT P N L + +
Sbjct: 138 PEDEKQANDFVLLLKACREALDAYSAKHPNGKK--FLLTIASPAGPQNYNKLKLAEMDKY 195
Query: 202 LNWVHAVTASY---YEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVM 258
L++ + + + ++ VS + + + S F S+D+ +K +I+ G+ A+K+V+
Sbjct: 196 LDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPF--SSDKAVKDYIKAGVPANKIVL 253
Query: 259 GLPFYGYAWTLVKPEDNGIGAA--ATGPALHGNGLVTYKEI 297
G+P YG A+ +GIG + G NG+ YK++
Sbjct: 254 GMPLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKDM 290
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 16/221 (7%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTA 142
++K N ++ LLSIG T + + RK F D+S+++ + GF G+D W
Sbjct: 80 LKKNNRNLKTLLSIGGW--TYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDINWEY 137
Query: 143 PNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPA-NSYLLNSIQRN 201
P + LL R A AK+ + ++ +LT P N L + +
Sbjct: 138 PEDEKQANDFVLLLKACREALDAYSAKHPNGKK--FLLTIASPAGPQNYNKLKLAEMDKY 195
Query: 202 LNWVHAVTASY---YEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVM 258
L++ + + + ++ VS + + + S F S+D+ +K +I+ G+ A+K+V+
Sbjct: 196 LDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPF--SSDKAVKDYIKAGVPANKIVL 253
Query: 259 GLPFYGYAWTLVKPEDNGIGAA--ATGPALHGNGLVTYKEI 297
G+P YG A+ +GIG + G NG+ YK++
Sbjct: 254 GMPLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKDM 290
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 158/387 (40%), Gaps = 83/387 (21%)
Query: 37 VSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVD---TVEKENPSITIL 93
VS I+ TH+ DINS + + ++D + V+ ++ NPS+ I+
Sbjct: 33 VSNITPAKAKQLTHINFSFLDINSNL-ECAWDPATNDAKARDVVNRLTALKAHNPSLRIM 91
Query: 94 LSIG-----QGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS-T 147
SIG + +++ Y + V+ + R F S +RI + YGF G+D W P +
Sbjct: 92 FSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEYPQAAEV 151
Query: 148 DMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILT------ARFL---YSPPANSYLLNSI 198
D F L E R + + RQ LT A FL YS L I
Sbjct: 152 DGFIAAL--QEIRTLLNQ-QTITDGRQALPYQLTIAGAGGAFFLSRYYSK------LAQI 202
Query: 199 QRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSG------------------------- 233
L++++ +T P T AAL+G ++G
Sbjct: 203 VAPLDYINLMTYDLAGPWE-KVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 261
Query: 234 GFARSTD-QVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPA------- 285
F+ + D V + + G+ + K+VMG+PFYG A+ V + G ++ + P
Sbjct: 262 PFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Query: 286 ---LHGNG---------LVTYKEIKNYIK-NYCPNVQVMYN----TIYVMNYFSTRTIWF 328
L G + +Y++++ ++ NY Q ++N T Y+ Y + ++
Sbjct: 322 DYWLVGCEECVRDKDPRIASYRQLEQMLQGNY--GYQRLWNDKTKTPYL--YHAQNGLFV 377
Query: 329 GFDDVEAVRAKIAYAKEKRLLGYYVWR 355
+DD E+ + K Y K+++L G W
Sbjct: 378 TYDDAESFKYKAKYIKQQQLGGVMFWH 404
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 158/387 (40%), Gaps = 83/387 (21%)
Query: 37 VSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVD---TVEKENPSITIL 93
VS I+ TH+ DINS + + ++D + V+ ++ NPS+ I+
Sbjct: 33 VSNITPAKAKQLTHINFSFLDINSNL-ECAWDPATNDAKARDVVNRLTALKAHNPSLRIM 91
Query: 94 LSIG-----QGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS-T 147
SIG + +++ Y + V+ + R F S +RI + YGF G+D W P +
Sbjct: 92 FSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAEV 151
Query: 148 DMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILT------ARFL---YSPPANSYLLNSI 198
D F L E R + + RQ LT A FL YS L I
Sbjct: 152 DGFIAAL--QEIRTLLNQ-QTITDGRQALPYQLTIAGAGGAFFLSRYYSK------LAQI 202
Query: 199 QRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSG------------------------- 233
L++++ +T P T AAL+G ++G
Sbjct: 203 VAPLDYINLMTYDLAGPWE-KVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 261
Query: 234 GFARSTD-QVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPA------- 285
F+ + D V + + G+ + K+VMG+PFYG A+ V + G ++ + P
Sbjct: 262 PFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Query: 286 ---LHGNG---------LVTYKEIKNYIK-NYCPNVQVMYN----TIYVMNYFSTRTIWF 328
L G + +Y++++ ++ NY Q ++N T Y+ Y + ++
Sbjct: 322 DYWLVGCEECVRDKDPRIASYRQLEQMLQGNY--GYQRLWNDKTKTPYL--YHAQNGLFV 377
Query: 329 GFDDVEAVRAKIAYAKEKRLLGYYVWR 355
+DD E+ + K Y K+++L G W
Sbjct: 378 TYDDAESFKYKAKYIKQQQLGGVMFWH 404
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 158/387 (40%), Gaps = 83/387 (21%)
Query: 37 VSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVD---TVEKENPSITIL 93
VS I+ TH+ DINS + + ++D + V+ ++ NPS+ I+
Sbjct: 33 VSNITPAKAKQLTHINFSFLDINSNL-ECAWDPATNDAKARDVVNRLTALKAHNPSLRIM 91
Query: 94 LSIG-----QGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS-T 147
SIG + +++ Y + V+ + R F S +RI + YGF G+D W P +
Sbjct: 92 FSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAEV 151
Query: 148 DMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILT------ARFL---YSPPANSYLLNSI 198
D F L E R + + RQ LT A FL YS L I
Sbjct: 152 DGFIAAL--QEIRTLLNQ-QTITDGRQALPYQLTIAGAGGAFFLSRYYSK------LAQI 202
Query: 199 QRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSG------------------------- 233
L++++ +T P T AAL+G ++G
Sbjct: 203 VAPLDYINLMTYDLAGPWE-KVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 261
Query: 234 GFARSTD-QVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPA------- 285
F+ + D V + + G+ + K+VMG+PFYG A+ V + G ++ + P
Sbjct: 262 PFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Query: 286 ---LHGNG---------LVTYKEIKNYIK-NYCPNVQVMYN----TIYVMNYFSTRTIWF 328
L G + +Y++++ ++ NY Q ++N T Y+ Y + ++
Sbjct: 322 DYWLVGCEECVRDKDPRIASYRQLEQMLQGNY--GYQRLWNDKTKTPYL--YHAQNGLFV 377
Query: 329 GFDDVEAVRAKIAYAKEKRLLGYYVWR 355
+DD E+ + K Y K+++L G W
Sbjct: 378 TYDDAESFKYKAKYIKQQQLGGVMFWH 404
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 158/387 (40%), Gaps = 83/387 (21%)
Query: 37 VSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVD---TVEKENPSITIL 93
VS I+ TH+ DINS + + ++D + V+ ++ NPS+ I+
Sbjct: 33 VSNITPAKAKQLTHINFSFLDINSNL-ECAWDPATNDAKARDVVNRLTALKAHNPSLRIM 91
Query: 94 LSIG-----QGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS-T 147
SIG + +++ Y + V+ + R F S +RI + YGF G+D W P +
Sbjct: 92 FSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWQYPQAAEV 151
Query: 148 DMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILT------ARFL---YSPPANSYLLNSI 198
D F L E R + + RQ LT A FL YS L I
Sbjct: 152 DGFIAAL--QEIRTLLNQ-QTITDGRQALPYQLTIAGAGGAFFLSRYYSK------LAQI 202
Query: 199 QRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSG------------------------- 233
L++++ +T P T AAL+G ++G
Sbjct: 203 VAPLDYINLMTYDLAGPWE-KVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 261
Query: 234 GFARSTD-QVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPA------- 285
F+ + D V + + G+ + K+VMG+PFYG A+ V + G ++ + P
Sbjct: 262 PFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Query: 286 ---LHGNG---------LVTYKEIKNYIK-NYCPNVQVMYN----TIYVMNYFSTRTIWF 328
L G + +Y++++ ++ NY Q ++N T Y+ Y + ++
Sbjct: 322 DYWLVGCEECVRDKDPRIASYRQLEQMLQGNY--GYQRLWNDKTKTPYL--YHAQNGLFV 377
Query: 329 GFDDVEAVRAKIAYAKEKRLLGYYVWR 355
+DD E+ + K Y K+++L G W
Sbjct: 378 TYDDAESFKYKAKYIKQQQLGGVMFWH 404
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 158/387 (40%), Gaps = 83/387 (21%)
Query: 37 VSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVD---TVEKENPSITIL 93
VS I+ TH+ DINS + + ++D + V+ ++ NPS+ I+
Sbjct: 33 VSNITPAKAKQLTHINFSFLDINSNL-ECAWDPATNDAKARDVVNRLTALKAHNPSLRIM 91
Query: 94 LSIG-----QGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS-T 147
SIG + +++ Y + V+ + R F S +RI + YGF G+D W P +
Sbjct: 92 FSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAEV 151
Query: 148 DMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILT------ARFL---YSPPANSYLLNSI 198
D F L E R + + RQ LT A FL YS L I
Sbjct: 152 DGFIAAL--QEIRTLLNQ-QTITDGRQALPYQLTIAGAGGAFFLSRYYSK------LAQI 202
Query: 199 QRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSG------------------------- 233
L++++ +T P T AAL+G ++G
Sbjct: 203 VAPLDYINLMTYDLAGPWE-KVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 261
Query: 234 GFARSTD-QVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPA------- 285
F+ + D V + + G+ + K+VMG+PFYG A+ V + G ++ + P
Sbjct: 262 PFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Query: 286 ---LHGNG---------LVTYKEIKNYIK-NYCPNVQVMYN----TIYVMNYFSTRTIWF 328
L G + +Y++++ ++ NY Q ++N T Y+ Y + ++
Sbjct: 322 DYWLVGCEECVRDKDPRIASYRQLEQMLQGNY--GYQRLWNDKTKTPYL--YHAQNGLFV 377
Query: 329 GFDDVEAVRAKIAYAKEKRLLGYYVWR 355
+DD E+ + K Y K+++L G W
Sbjct: 378 TYDDAESFKYKAKYIKQQQLGGVMFWH 404
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 158/387 (40%), Gaps = 83/387 (21%)
Query: 37 VSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVD---TVEKENPSITIL 93
VS I+ TH+ DINS + + ++D + V+ ++ NPS+ I+
Sbjct: 32 VSNITPAKAKQLTHINFSFLDINSNL-ECAWDPATNDAKARDVVNRLTALKAHNPSLRIM 90
Query: 94 LSIG-----QGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS-T 147
SIG + +++ Y + V+ + R F S +RI + YGF G+D W P +
Sbjct: 91 FSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAEV 150
Query: 148 DMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILT------ARFL---YSPPANSYLLNSI 198
D F L E R + + RQ LT A FL YS L I
Sbjct: 151 DGFIAAL--QEIRTLLNQ-QTITDGRQALPYQLTIAGAGGAFFLSRYYSK------LAQI 201
Query: 199 QRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSG------------------------- 233
L++++ +T P T AAL+G ++G
Sbjct: 202 VAPLDYINLMTYDLAGPWE-KVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 260
Query: 234 GFARSTD-QVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPA------- 285
F+ + D V + + G+ + K+VMG+PFYG A+ V + G ++ + P
Sbjct: 261 PFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 320
Query: 286 ---LHGNG---------LVTYKEIKNYIK-NYCPNVQVMYN----TIYVMNYFSTRTIWF 328
L G + +Y++++ ++ NY Q ++N T Y+ Y + ++
Sbjct: 321 DYWLVGCEECVRDKDPRIASYRQLEQMLQGNY--GYQRLWNDKTKTPYL--YHAQNGLFV 376
Query: 329 GFDDVEAVRAKIAYAKEKRLLGYYVWR 355
+DD E+ + K Y K+++L G W
Sbjct: 377 TYDDAESFKYKAKYIKQQQLGGVMFWH 403
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 91/387 (23%), Positives = 158/387 (40%), Gaps = 83/387 (21%)
Query: 37 VSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVD---TVEKENPSITIL 93
VS I+ TH+ DINS + + ++D + V+ ++ NPS+ I+
Sbjct: 33 VSNITPAKAKQLTHINFSFLDINSNL-ECAWDPATNDAKARDVVNRLTALKAHNPSLRIM 91
Query: 94 LSIG-----QGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS-T 147
SIG + +++ Y + V+ + R F S +RI + YGF G++ W P +
Sbjct: 92 FSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAEV 151
Query: 148 DMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILT------ARFL---YSPPANSYLLNSI 198
D F L E R + + RQ LT A FL YS L I
Sbjct: 152 DGFIAAL--QEIRTLLNQ-QTITDGRQALPYQLTIAGAGGAFFLSRYYSK------LAQI 202
Query: 199 QRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSG------------------------- 233
L++++ +T P T AAL+G ++G
Sbjct: 203 VAPLDYINLMTYDLAGPWE-KVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 261
Query: 234 GFARSTD-QVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPA------- 285
F+ + D V + + G+ + K+VMG+PFYG A+ V + G ++ + P
Sbjct: 262 PFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Query: 286 ---LHGNG---------LVTYKEIKNYIK-NYCPNVQVMYN----TIYVMNYFSTRTIWF 328
L G + +Y++++ ++ NY Q ++N T Y+ Y + ++
Sbjct: 322 DYWLVGCEECVRDKDPRIASYRQLEQMLQGNY--GYQRLWNDKTKTPYL--YHAQNGLFV 377
Query: 329 GFDDVEAVRAKIAYAKEKRLLGYYVWR 355
+DD E+ + K Y K+++L G W
Sbjct: 378 TYDDAESFKYKAKYIKQQQLGGVMFWH 404
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 127/324 (39%), Gaps = 62/324 (19%)
Query: 83 VEKENPSITILLSIGQGM--DTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGF-QGLDFA 139
+++ NP + I+ SIG G D Y + +R +F+ S + + + F G+D
Sbjct: 238 LKQRNPDLKIIPSIGGGTLSDPFYDFV-----DKKNRDTFVASVKKFLKTWKFYDGVDID 292
Query: 140 WTAPNTSTDMFNVG----------LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPP 189
W P + G L E R+ +LEA+ + + +L Y
Sbjct: 293 WEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAE--TGRTYELTSAIGVGYDKI 350
Query: 190 ANSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALY-------GSSSGGF------- 235
+ +++Q ++++ A+T +Y + N ALY G GG
Sbjct: 351 EDVDYADAVQY-MDYIFAMTYDFYGGWN-NVPGHQTALYCGSFMRPGQCDGGGVDENGEP 408
Query: 236 ----ARSTDQVLKAWIERGLSADKLVMGLPFYGYAW------TLVKPEDNGIGAA----- 280
A + D ++ + +G+ A+KLV+G YG W TL P D G A
Sbjct: 409 YKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLK 468
Query: 281 -ATGPALHGNGLVTYKEIKNY--------IKNYCPNVQVMYNTIYVMNYFSTRTIWFGFD 331
+T + +G++ YK IK++ I + +V N + I FD
Sbjct: 469 GSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELIT--FD 526
Query: 332 DVEAVRAKIAYAKEKRLLGYYVWR 355
D +V AK YAK L G + W
Sbjct: 527 DHRSVLAKGNYAKSLGLAGLFSWE 550
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 128/322 (39%), Gaps = 58/322 (18%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGF-QGLDFAWT 141
+++ NP + I+ SIG G + Y + + +R +F+ S + + + F G+D W
Sbjct: 238 LKQRNPDLKIIPSIG-GWTLSDPFYDFV--DKKNRDTFVASVKKFLKTWKFYDGVDIDWE 294
Query: 142 APNTSTDMFNVG----------LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN 191
P + G L E R+ +LEA+ + + +L Y +
Sbjct: 295 FPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAE--TGRTYELTSAIGVGYDKIED 352
Query: 192 SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALY-------GSSSGGF--------- 235
+++Q ++++ A+T +Y + N ALY G GG
Sbjct: 353 VDYADAVQY-MDYIFAMTYDFYGGWN-NVPGHQTALYCGSFMRPGQCDGGGVDENGEPYK 410
Query: 236 --ARSTDQVLKAWIERGLSADKLVMGLPFYGYAW------TLVKPEDNGIGAA------A 281
A + D ++ + +G+ A+KLV+G YG W TL P D G A +
Sbjct: 411 GPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGS 470
Query: 282 TGPALHGNGLVTYKEIKNY--------IKNYCPNVQVMYNTIYVMNYFSTRTIWFGFDDV 333
T + +G++ YK IK++ I + +V N + I FDD
Sbjct: 471 TAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELI--TFDDH 528
Query: 334 EAVRAKIAYAKEKRLLGYYVWR 355
+V AK YAK L G + W
Sbjct: 529 RSVLAKGNYAKSLGLAGLFSWE 550
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 128/322 (39%), Gaps = 58/322 (18%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGF-QGLDFAWT 141
+++ NP + I+ SIG G + Y + + +R +F+ S + + + F G+D W
Sbjct: 238 LKQRNPDLKIIPSIG-GWTLSDPFYDFV--DKKNRDTFVASVKKFLKTWKFYDGVDIDWM 294
Query: 142 APNTSTDMFNVG----------LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN 191
P + G L E R+ +LEA+ + + +L Y +
Sbjct: 295 FPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAE--TGRTYELTSAIGVGYDKIED 352
Query: 192 SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALY-------GSSSGGF--------- 235
+++Q ++++ A+T +Y + N ALY G GG
Sbjct: 353 VDYADAVQY-MDYIFAMTYDFYGGWN-NVPGHQTALYCGSFMRPGQCDGGGVDENGEPYK 410
Query: 236 --ARSTDQVLKAWIERGLSADKLVMGLPFYGYAW------TLVKPEDNGIGAA------A 281
A + D ++ + +G+ A+KLV+G YG W TL P D G A +
Sbjct: 411 GPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGS 470
Query: 282 TGPALHGNGLVTYKEIKNY--------IKNYCPNVQVMYNTIYVMNYFSTRTIWFGFDDV 333
T + +G++ YK IK++ I + +V N + I FDD
Sbjct: 471 TAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELI--TFDDH 528
Query: 334 EAVRAKIAYAKEKRLLGYYVWR 355
+V AK YAK L G + W
Sbjct: 529 RSVLAKGNYAKSLGLAGLFSWE 550
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 114/291 (39%), Gaps = 27/291 (9%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGF-QGLDFAWT 141
+++ +P + IL SIG G + + + + R F+ S + + F G+D AW
Sbjct: 236 LKQAHPDLKILPSIG-GWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIAWE 292
Query: 142 APNTSTDMFNVG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANS 192
P N+G LL E R +L + + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG---KDKIDK 349
Query: 193 YLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 251
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 409
Query: 252 SADKLVMGLPFYGYAWTLVKPEDNGI--GAAATGP--ALHGNGLVTYKEIKNYIKNYCPN 307
K+V+G YG WT V N I ATGP NG+V Y++I
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQF--MSGE 467
Query: 308 VQVMYNTIYVMNYF---STRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355
Q Y+ Y ST + FDD +V+AK Y +K+L G + W
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 115/291 (39%), Gaps = 27/291 (9%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGF-QGLDFAWT 141
+++ +P + IL SIG G + + + + R F+ S + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG-GWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWE 292
Query: 142 APNTSTDMFNVG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANS 192
P N+G LL E R +L A+ + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAG---KDKIDK 349
Query: 193 YLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 251
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLTQGV 409
Query: 252 SADKLVMGLPFYGYAWTLVKPEDNGI--GAAATGP--ALHGNGLVTYKEIKNYIKNYCPN 307
K+V+G YG WT V N I ATGP NG+V Y++I +
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQF--MSGE 467
Query: 308 VQVMYNTIYVMNYF---STRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355
Q Y+ Y ST + FDD +V+AK Y +K+L G + W
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 115/291 (39%), Gaps = 27/291 (9%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGF-QGLDFAWT 141
+++ +P + IL SIG G + + + + R F+ S + + F G+D W
Sbjct: 259 LKQAHPDLKILPSIG-GWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWE 315
Query: 142 APNTSTDMFNVG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANS 192
P N+G LL E R +L A+ + + ++A +
Sbjct: 316 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAG---KDKIDK 372
Query: 193 YLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 251
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 373 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 432
Query: 252 SADKLVMGLPFYGYAWTLVKPEDNGI--GAAATGP--ALHGNGLVTYKEIKNYIKNYCPN 307
K+V+G YG WT V N I ATGP NG+V Y++I +
Sbjct: 433 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQF--MSGE 490
Query: 308 VQVMYNTIYVMNYF---STRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355
Q Y+ Y ST + FDD +V+AK Y +K+L G + W
Sbjct: 491 WQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 540
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 115/291 (39%), Gaps = 27/291 (9%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGF-QGLDFAWT 141
+++ +P + IL SIG G + + + + R F+ S + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG-GWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWE 292
Query: 142 APNTSTDMFNVG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANS 192
P N+G LL E R +L A+ + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAG---KDKIDK 349
Query: 193 YLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 251
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLTQGV 409
Query: 252 SADKLVMGLPFYGYAWTLVKPEDNGI--GAAATGP--ALHGNGLVTYKEIKNYIKNYCPN 307
K+V+G YG WT V N I ATGP NG+V Y++I +
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQF--MSGE 467
Query: 308 VQVMYNTIYVMNYF---STRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355
Q Y+ Y ST + FDD +V+AK Y +K+L G + W
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 114/291 (39%), Gaps = 27/291 (9%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGF-QGLDFAWT 141
+++ +P + IL SIG G + + + + R F+ S + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG-GWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWE 292
Query: 142 APNTSTDMFNVG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANS 192
P N+G LL E R +L + + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG---KDKIDK 349
Query: 193 YLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 251
N Q +++ + ++ ++Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYAFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 409
Query: 252 SADKLVMGLPFYGYAWTLVKPEDNGI--GAAATGP--ALHGNGLVTYKEIKNYIKNYCPN 307
K+V+G YG WT V N I ATGP NG+V Y++I
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQF--MSGE 467
Query: 308 VQVMYNTIYVMNYF---STRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355
Q Y+ Y ST + FDD +V+AK Y +K+L G + W
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 113/291 (38%), Gaps = 27/291 (9%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGF-QGLDFAWT 141
+++ +P + IL SIG G + + + + R F+ S + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG-GWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWE 292
Query: 142 APNTSTDMFNVG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANS 192
P N+G LL E R +L + + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG---KDKIDK 349
Query: 193 YLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 251
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSFDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 409
Query: 252 SADKLVMGLPFYGYAWTLVKPEDNGI--GAAATGP--ALHGNGLVTYKEIKNYIKNYCPN 307
K+V+G YG WT V N I ATGP NG+V Y++I
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQF--MSGE 467
Query: 308 VQVMYNTIYVMNYF---STRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355
Q Y+ Y ST + FDD +V+AK Y +K+L G + W
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 113/291 (38%), Gaps = 27/291 (9%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGF-QGLDFAWT 141
+++ +P + IL SIG G + + + + R F+ S + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG-GWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWE 292
Query: 142 APNTSTDMFNVG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANS 192
P N+G LL E R +L + + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSTETGRKYELTSAISAG---KDKIDK 349
Query: 193 YLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 251
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 409
Query: 252 SADKLVMGLPFYGYAWTLVKPEDNGI--GAAATGP--ALHGNGLVTYKEIKNYIKNYCPN 307
K+V+G YG WT V N I ATGP NG+V Y++I
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQF--MSGE 467
Query: 308 VQVMYNTIYVMNYF---STRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355
Q Y+ Y ST + FDD +V+AK Y +K+L G + W
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 113/291 (38%), Gaps = 27/291 (9%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGF-QGLDFAWT 141
+++ +P + IL SIG G + + + + R F+ S + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG-GWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWQ 292
Query: 142 APNTSTDMFNVG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANS 192
P N+G LL E R +L + + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG---KDKIDK 349
Query: 193 YLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 251
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 409
Query: 252 SADKLVMGLPFYGYAWTLVKPEDNGI--GAAATGP--ALHGNGLVTYKEIKNYIKNYCPN 307
K+V+G YG WT V N I ATGP NG+V Y++I
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQF--MSGE 467
Query: 308 VQVMYNTIYVMNYF---STRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355
Q Y+ Y ST + FDD +V+AK Y +K+L G + W
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 113/291 (38%), Gaps = 27/291 (9%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGF-QGLDFAWT 141
+++ +P + IL SIG G + + + + R F+ S + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG-GWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWE 292
Query: 142 APNTSTDMFNVG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANS 192
P N+G LL E R +L + + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG---KDKIDK 349
Query: 193 YLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 251
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 409
Query: 252 SADKLVMGLPFYGYAWTLVKPEDNGI--GAAATGP--ALHGNGLVTYKEIKNYIKNYCPN 307
K+V+G YG WT V N I ATGP NG+V Y++I
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQF--MSGE 467
Query: 308 VQVMYNTIYVMNYF---STRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355
Q Y+ Y ST + FDD +V+AK Y +K+L G + W
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 114/291 (39%), Gaps = 27/291 (9%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGF-QGLDFAWT 141
+++ +P + IL SIG G + + + + R F+ S + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG-GWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWL 292
Query: 142 APNTSTDMFNVG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANS 192
P N+G LL E R +L + + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG---KDKIDK 349
Query: 193 YLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 251
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 409
Query: 252 SADKLVMGLPFYGYAWTLVKPEDNGI--GAAATGP--ALHGNGLVTYKEIKNYIKNYCPN 307
K+V+G YG WT V N I ATGP NG+V Y++I +
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQF--MSGE 467
Query: 308 VQVMYNTIYVMNYF---STRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355
Q Y+ Y ST + FDD +V+AK Y +K+L G + W
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWE 517
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 82 TVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWT 141
+ K+NP + +LLS+G +S + R FI S+ +I + YG G+D W
Sbjct: 100 ALRKQNPDLKVLLSVG---GWGARGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWE 156
Query: 142 AP 143
P
Sbjct: 157 FP 158
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 52/253 (20%)
Query: 27 IRVGYLNLSK---VSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTV 83
+ +GYL L S I + TH+ A + + +L++ +I +T
Sbjct: 5 VVIGYLALDDWEFESLFPTIEWKYLTHINASFARVKADG---TLNINPVRKRIESVRETA 61
Query: 84 EKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAP 143
K N + IL+S+ + ++ + + + RK I I + Y G D +
Sbjct: 62 HKHN--VKILISLAKNSPGEFT---TAINDPKARKELIQQIIAFTKEYKLDGFDIDYEE- 115
Query: 144 NTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLNSIQRNLN 203
+D W + L++ AR LY + L + N
Sbjct: 116 ------------YDNW------------DKNFPSLLVFARGLYLAKEKN-XLXTCAVNSR 150
Query: 204 WVHAVTA--SYYEPVSTN------FTAPPAALYGSSSGGFARSTDQVLKAWIERG-LSAD 254
W++ T Y++ ++ FT P +S F + LK W E+ S
Sbjct: 151 WLNYGTEWEQYFDYINLXSYDRGAFTDKPVQ--HASYDDFVKD----LKYWNEQCRASKS 204
Query: 255 KLVMGLPFYGYAW 267
K+V GLPFYGY+W
Sbjct: 205 KIVGGLPFYGYSW 217
>pdb|2SAS|A Chain A, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Amphioxus Refined At 2.4 Angstroms Resolution
Length = 185
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 238 STDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPALHGNGLVTYKEI 297
S ++ L W E+ ++ K V LP AW N I G + G+G+V +E
Sbjct: 78 SWEEYLAMW-EKTIATCKSVADLP----AWC-----QNRIPFLFKGMDVSGDGIVDLEEF 127
Query: 298 KNYIKNY---CPNVQVMYNTI 315
+NY KN+ C +V +YN I
Sbjct: 128 QNYCKNFQLQCADVPAVYNVI 148
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 114/311 (36%), Gaps = 55/311 (17%)
Query: 83 VEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRK---SFIDSSIR--IARLYG----- 132
++ +NP + +++S+G G + + + +S +K S ID I+ + G
Sbjct: 111 LKAKNPKLKVMISLG-GWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAG 169
Query: 133 -----FQGLDFAWTAPNTST-----------DMFNVGLLFDEWRIAATKLEAKNSSRQQS 176
F G+D W P T++ D N L E+R +L+A S+ +
Sbjct: 170 AAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFR---KQLDAYGSTNNK- 225
Query: 177 QLILTARFLYSP----------PAN--SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPP 224
+ +L+A +P PAN S SIQ +H N P
Sbjct: 226 KYVLSAFLPANPADIDAGGWDDPANFKSLDFGSIQGYD--LHGAWNPTLTGHQANLYDDP 283
Query: 225 AALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGP 284
A S S D+ +K ++ G+ +L +GL YG WT K A P
Sbjct: 284 ADPRAPSK---KFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAKNVSPWGPATDGAP 340
Query: 285 ALHGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFSTRTIWFGFDDVEAVRAKIAYAK 344
+ Y ++K ++ Y+ + T W+ +D++ + K Y
Sbjct: 341 GTYETANEDYDKLKTLGTDH-------YDAATGSAWRYDGTQWWSYDNIATTKQKTDYIV 393
Query: 345 EKRLLGYYVWR 355
K L G W
Sbjct: 394 SKGLGGGMWWE 404
>pdb|1UPA|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|2IHT|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
Length = 573
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 304 YCPNVQVMYNTIYVMNYFSTRTIWFGFD---DVEAVRAKIA 341
Y P+V V+ + + + +F T T FG D+E +RA+IA
Sbjct: 329 YRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIA 369
>pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|E Chain E, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|F Chain F, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|2IHV|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHU|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
Length = 573
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 304 YCPNVQVMYNTIYVMNYFSTRTIWFGFD---DVEAVRAKIA 341
Y P+V V+ + + + +F T T FG D+E +RA+IA
Sbjct: 329 YRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIA 369
>pdb|3QUF|A Chain A, The Structure Of A Family 1 Extracellular Solute-Binding
Protein From Bifidobacterium Longum Subsp. Infantis
pdb|3QUF|B Chain B, The Structure Of A Family 1 Extracellular Solute-Binding
Protein From Bifidobacterium Longum Subsp. Infantis
Length = 414
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 73 DNQIAKFVDTVEKENPSITILLSIGQ 98
DNQI + V EK+NP IT+ + GQ
Sbjct: 40 DNQIGEVVKGFEKKNPDITLDVQYGQ 65
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 23/108 (21%)
Query: 255 KLVMGLPFYGYAWTLVKPEDNGIGAAATGPALHGNGLVTYKEIKNYIKNYCPNVQVMYNT 314
K+++G+P YGY W + P G A+A + I+ ++ P + Y+
Sbjct: 216 KIIIGVPLYGYDWII--PYQPGTVASA---------ISNQNAIERAMRYQAP---IQYSA 261
Query: 315 IYVMNYF-------STRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355
Y +F T +W F+ V ++ K+ +E RL W+
Sbjct: 262 EYQSPFFRYSDQQGRTHEVW--FEGVRSMSRKMQIVREYRLQAIGAWQ 307
>pdb|3RUR|A Chain A, Staphylococcus Aureus Heme-Bound Selenomethionine-Labeled
Isdb-N2
pdb|3RUR|B Chain B, Staphylococcus Aureus Heme-Bound Selenomethionine-Labeled
Isdb-N2
pdb|3RUR|C Chain C, Staphylococcus Aureus Heme-Bound Selenomethionine-Labeled
Isdb-N2
pdb|3RUR|D Chain D, Staphylococcus Aureus Heme-Bound Selenomethionine-Labeled
Isdb-N2
Length = 121
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 100 MDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEW 159
DT Y +Y S+ N S +F+ I+ L G + + T+ D + +
Sbjct: 8 QDTKYVVYESVENNESXXDTFVKHPIKTGXLNGKK-----YXVXETTNDDYWKDFXVEGQ 62
Query: 160 RIAATKLEAKNSSR 173
R+ +AKN++R
Sbjct: 63 RVRTISKDAKNNTR 76
>pdb|3RTL|A Chain A, Staphylococcus Aureus Heme-Bound Isdb-N2
pdb|3RTL|B Chain B, Staphylococcus Aureus Heme-Bound Isdb-N2
pdb|3RTL|C Chain C, Staphylococcus Aureus Heme-Bound Isdb-N2
pdb|3RTL|D Chain D, Staphylococcus Aureus Heme-Bound Isdb-N2
Length = 121
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 101 DTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWR 160
DT Y +Y S+ N S +F+ I+ L G + + T+ D + + + R
Sbjct: 9 DTKYVVYESVENNESMMDTFVKHPIKTGMLNGKK-----YMVMETTNDDYWKDFMVEGQR 63
Query: 161 IAATKLEAKNSSR 173
+ +AKN++R
Sbjct: 64 VRTISKDAKNNTR 76
>pdb|1PNF|A Chain A, Pngase F Complex With Di-N-Acetylchitobiose
pdb|1PNG|A Chain A, Crystal Structure Of Peptide-N(4)-(N-Acetyl-Beta-D-
Glucosaminyl) Asparagine Amidase At 2.2 Angstroms
Resolution
Length = 314
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 275 NGIGAAATGPALHGNGLVTYKEIKNYIKNYCPNVQV----MYNTIYVMN 319
+G+ +A G + T K IK +IKN CPN Y +YV N
Sbjct: 21 DGLSQSAEGTFTFPADVTTVKTIKMFIKNECPNKTCDEWDRYANVYVKN 69
>pdb|1PGS|A Chain A, The Three-Dimensional Structure Of Pngase F, A
Glycosylasparaginase From Flavobacterium Meningosepticum
Length = 314
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 275 NGIGAAATGPALHGNGLVTYKEIKNYIKNYCPNVQV----MYNTIYVMN 319
+G+ +A G + T K IK +IKN CPN Y +YV N
Sbjct: 21 DGLSQSAEGTFTFPADVTTVKTIKMFIKNECPNKTCDEWDRYANVYVKN 69
>pdb|3K1Q|A Chain A, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|W Chain W, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1299
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 201 NLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIE---RGLSADKLV 257
NL HA T +P N + G S G RST + +A + R + D+ V
Sbjct: 633 NLYATHATTLHLVKPTIVNSSEVFLVFGGRQSNGALRSTTALQRALLSLYARNAAIDRAV 692
Query: 258 MGLPFYG 264
+PF+G
Sbjct: 693 THIPFFG 699
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,531,170
Number of Sequences: 62578
Number of extensions: 421118
Number of successful extensions: 1150
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 989
Number of HSP's gapped (non-prelim): 76
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)