Query 040722
Match_columns 355
No_of_seqs 171 out of 1412
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 11:06:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02879 GH18_plant_chitinase_c 100.0 4.4E-66 9.6E-71 473.4 31.3 280 26-355 3-289 (299)
2 cd02872 GH18_chitolectin_chito 100.0 1.1E-64 2.3E-69 478.7 33.1 313 28-355 1-337 (362)
3 cd02873 GH18_IDGF The IDGF's ( 100.0 6.5E-64 1.4E-68 477.1 34.1 318 27-355 1-388 (413)
4 smart00636 Glyco_18 Glycosyl h 100.0 3.6E-62 7.7E-67 457.0 32.1 314 27-355 1-330 (334)
5 cd02878 GH18_zymocin_alpha Zym 100.0 8.2E-62 1.8E-66 453.8 30.3 305 27-355 1-341 (345)
6 cd06548 GH18_chitinase The GH1 100.0 1.4E-61 3E-66 449.4 29.3 282 28-355 1-318 (322)
7 KOG2806 Chitinase [Carbohydrat 100.0 4.7E-61 1E-65 458.6 33.3 323 24-355 56-393 (432)
8 COG3325 ChiA Chitinase [Carboh 100.0 1.4E-60 3.1E-65 433.0 24.3 323 23-355 35-419 (441)
9 PF00704 Glyco_hydro_18: Glyco 100.0 1.1E-56 2.4E-61 421.7 30.7 319 26-355 1-339 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 1.1E-54 2.3E-59 402.8 25.4 283 27-355 4-306 (318)
11 cd02875 GH18_chitobiase Chitob 100.0 6.8E-52 1.5E-56 387.6 30.8 283 24-355 34-335 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 4.9E-51 1.1E-55 378.0 25.3 282 27-355 3-301 (313)
13 cd06549 GH18_trifunctional GH1 100.0 1.9E-47 4.2E-52 350.3 23.9 282 27-355 1-289 (298)
14 cd06545 GH18_3CO4_chitinase Th 100.0 1.2E-46 2.6E-51 337.9 25.3 235 28-355 1-238 (253)
15 cd00598 GH18_chitinase-like Th 100.0 2.5E-36 5.5E-41 264.2 21.1 170 28-211 1-177 (210)
16 COG3858 Predicted glycosyl hyd 100.0 9.4E-35 2E-39 264.0 19.5 230 89-355 160-406 (423)
17 cd06546 GH18_CTS3_chitinase GH 100.0 2E-33 4.3E-38 251.1 25.4 195 27-262 1-217 (256)
18 cd06544 GH18_narbonin Narbonin 100.0 4.1E-33 9E-38 247.4 20.7 203 36-267 11-221 (253)
19 cd02871 GH18_chitinase_D-like 100.0 1E-29 2.2E-34 234.5 25.4 209 26-263 1-248 (312)
20 KOG2091 Predicted member of gl 100.0 1E-27 2.2E-32 208.6 16.6 285 25-355 78-380 (392)
21 cd06542 GH18_EndoS-like Endo-b 99.9 2.6E-24 5.7E-29 193.6 17.0 196 26-265 1-208 (255)
22 cd02877 GH18_hevamine_XipI_cla 99.9 2.8E-22 6.2E-27 180.6 21.9 201 28-263 3-229 (280)
23 cd06543 GH18_PF-ChiA-like PF-C 99.9 4.2E-21 9E-26 174.2 16.8 149 45-215 23-184 (294)
24 COG3469 Chitinase [Carbohydrat 99.7 5.2E-16 1.1E-20 132.0 14.5 177 21-215 21-215 (332)
25 KOG4701 Chitinase [Cell wall/m 99.4 7E-11 1.5E-15 106.4 20.5 227 1-263 1-257 (568)
26 cd06547 GH85_ENGase Endo-beta- 98.8 4.4E-08 9.4E-13 91.0 11.9 155 79-268 51-216 (339)
27 PF03644 Glyco_hydro_85: Glyco 98.1 9.9E-06 2.1E-10 74.5 8.4 153 78-266 46-209 (311)
28 PF02638 DUF187: Glycosyl hydr 98.1 3.4E-05 7.5E-10 71.2 11.6 126 113-265 135-299 (311)
29 PF11340 DUF3142: Protein of u 97.8 0.00041 8.9E-09 57.7 11.3 115 113-264 22-138 (181)
30 PF13200 DUF4015: Putative gly 97.6 0.027 5.9E-07 51.8 21.4 166 45-227 24-241 (316)
31 KOG2331 Predicted glycosylhydr 96.6 0.038 8.1E-07 51.8 11.8 83 81-167 118-201 (526)
32 PF14883 GHL13: Hypothetical g 92.9 5.9 0.00013 35.8 14.4 194 47-268 30-266 (294)
33 TIGR02103 pullul_strch alpha-1 92.6 1.1 2.4E-05 47.2 11.0 84 74-167 404-516 (898)
34 TIGR02104 pulA_typeI pullulana 92.0 1.9 4E-05 43.9 11.5 84 74-167 229-339 (605)
35 cd02810 DHOD_DHPD_FMN Dihydroo 91.2 2.8 6.1E-05 38.2 11.0 105 74-208 83-196 (289)
36 cd04734 OYE_like_3_FMN Old yel 91.2 8.2 0.00018 36.2 14.2 146 49-209 48-250 (343)
37 PRK12313 glycogen branching en 91.1 2.3 5E-05 43.5 11.3 93 72-167 218-352 (633)
38 TIGR02402 trehalose_TreZ malto 91.1 2 4.4E-05 43.0 10.6 90 72-167 158-268 (542)
39 cd04733 OYE_like_2_FMN Old yel 90.7 5.4 0.00012 37.4 12.5 69 70-142 78-172 (338)
40 PRK12568 glycogen branching en 90.3 3.9 8.5E-05 42.2 11.9 93 72-167 317-452 (730)
41 TIGR01515 branching_enzym alph 89.9 4.3 9.4E-05 41.4 11.9 93 72-167 204-339 (613)
42 COG1649 Uncharacterized protei 89.5 0.87 1.9E-05 43.5 6.0 90 114-211 181-308 (418)
43 cd02930 DCR_FMN 2,4-dienoyl-Co 88.9 8.2 0.00018 36.4 12.3 147 48-209 47-245 (353)
44 PRK05402 glycogen branching en 88.6 5.9 0.00013 41.3 12.0 93 72-167 313-448 (726)
45 TIGR02102 pullulan_Gpos pullul 88.2 4.7 0.0001 43.7 11.1 84 74-167 555-662 (1111)
46 PRK14706 glycogen branching en 87.6 8.4 0.00018 39.4 12.1 93 72-167 215-348 (639)
47 COG1306 Uncharacterized conser 87.6 2.4 5.3E-05 38.3 7.2 84 118-214 195-300 (400)
48 PLN02960 alpha-amylase 87.0 8.2 0.00018 40.6 11.6 92 72-167 464-601 (897)
49 TIGR01370 cysRS possible cyste 86.5 3.9 8.5E-05 37.8 8.3 86 113-209 142-236 (315)
50 cd02929 TMADH_HD_FMN Trimethyl 84.7 25 0.00054 33.4 13.1 92 48-142 52-173 (370)
51 cd02932 OYE_YqiM_FMN Old yello 84.3 16 0.00034 34.2 11.5 48 47-96 46-97 (336)
52 PF00724 Oxidored_FMN: NADH:fl 83.2 9.5 0.00021 35.8 9.5 48 48-97 50-101 (341)
53 PF14871 GHL6: Hypothetical gl 82.9 6.8 0.00015 31.3 7.2 66 73-140 43-132 (132)
54 PRK10785 maltodextrin glucosid 82.5 17 0.00038 36.9 11.7 93 72-167 224-363 (598)
55 PF13199 Glyco_hydro_66: Glyco 82.4 3.6 7.9E-05 41.1 6.6 53 112-165 238-300 (559)
56 PRK14705 glycogen branching en 82.2 16 0.00035 40.2 11.7 93 72-167 813-948 (1224)
57 PLN02877 alpha-amylase/limit d 81.7 8.4 0.00018 41.1 9.2 69 75-145 467-565 (970)
58 PLN02495 oxidoreductase, actin 80.8 24 0.00052 33.7 11.2 57 73-145 97-153 (385)
59 cd04740 DHOD_1B_like Dihydroor 80.3 21 0.00046 32.6 10.6 57 88-161 88-151 (296)
60 PRK14581 hmsF outer membrane N 80.2 50 0.0011 34.0 13.9 197 46-268 346-614 (672)
61 cd02803 OYE_like_FMN_family Ol 80.0 9.5 0.00021 35.4 8.3 47 48-96 47-97 (327)
62 PLN03244 alpha-amylase; Provis 80.0 25 0.00055 36.6 11.5 66 72-139 439-531 (872)
63 TIGR02100 glgX_debranch glycog 79.6 11 0.00024 39.0 9.1 87 73-161 244-365 (688)
64 PRK13523 NADPH dehydrogenase N 79.4 55 0.0012 30.6 13.9 91 48-142 51-165 (337)
65 PRK14582 pgaB outer membrane N 78.7 14 0.00029 38.0 9.3 132 113-268 439-614 (671)
66 cd02940 DHPD_FMN Dihydropyrimi 78.2 35 0.00075 31.3 11.3 70 76-161 86-165 (299)
67 COG1902 NemA NADH:flavin oxido 77.9 45 0.00098 31.6 12.0 127 72-212 81-262 (363)
68 cd04735 OYE_like_4_FMN Old yel 77.6 64 0.0014 30.4 14.5 150 51-211 51-258 (353)
69 PRK08318 dihydropyrimidine deh 77.0 36 0.00079 32.9 11.5 65 81-161 91-165 (420)
70 cd02801 DUS_like_FMN Dihydrour 76.9 16 0.00034 31.9 8.3 63 84-164 49-122 (231)
71 PRK03705 glycogen debranching 76.1 12 0.00027 38.4 8.3 66 74-141 242-338 (658)
72 TIGR00737 nifR3_yhdG putative 75.3 33 0.00071 31.8 10.4 42 86-144 59-100 (319)
73 PRK07565 dihydroorotate dehydr 75.1 38 0.00083 31.6 10.8 73 73-164 86-164 (334)
74 cd04747 OYE_like_5_FMN Old yel 74.5 19 0.00042 34.0 8.7 47 48-96 47-98 (361)
75 PRK07259 dihydroorotate dehydr 73.1 32 0.0007 31.5 9.7 56 89-161 91-154 (301)
76 PF02057 Glyco_hydro_59: Glyco 72.4 10 0.00023 38.4 6.5 83 78-167 116-200 (669)
77 COG1891 Uncharacterized protei 72.1 58 0.0013 27.3 9.8 167 111-348 4-181 (235)
78 cd06591 GH31_xylosidase_XylS X 71.8 23 0.0005 32.9 8.4 34 111-144 128-161 (319)
79 PLN02447 1,4-alpha-glucan-bran 71.8 45 0.00098 34.8 11.1 92 72-167 298-436 (758)
80 PRK10550 tRNA-dihydrouridine s 71.3 28 0.0006 32.3 8.7 93 89-209 62-169 (312)
81 PF14885 GHL15: Hypothetical g 71.0 7.7 0.00017 27.9 3.9 43 97-140 32-75 (79)
82 cd02931 ER_like_FMN Enoate red 70.4 22 0.00049 33.9 8.2 22 73-96 82-103 (382)
83 cd06592 GH31_glucosidase_KIAA1 69.2 25 0.00054 32.3 8.0 33 111-143 134-166 (303)
84 PRK02506 dihydroorotate dehydr 68.1 48 0.001 30.6 9.6 73 74-164 77-156 (310)
85 PF07172 GRP: Glycine rich pro 67.8 2.2 4.7E-05 32.0 0.5 12 1-12 1-12 (95)
86 cd04741 DHOD_1A_like Dihydroor 63.6 76 0.0016 29.0 10.0 59 88-164 90-156 (294)
87 PRK08255 salicylyl-CoA 5-hydro 62.9 37 0.00079 35.7 8.7 84 117-208 550-658 (765)
88 COG4724 Endo-beta-N-acetylgluc 61.4 19 0.00041 34.0 5.4 78 78-161 131-217 (553)
89 PLN02411 12-oxophytodienoate r 61.4 28 0.00062 33.3 7.0 44 51-96 60-107 (391)
90 PF14587 Glyco_hydr_30_2: O-Gl 61.3 69 0.0015 30.5 9.2 90 74-167 104-216 (384)
91 TIGR01093 aroD 3-dehydroquinat 61.3 1.1E+02 0.0024 26.7 13.3 46 255-300 182-227 (228)
92 TIGR01037 pyrD_sub1_fam dihydr 61.2 92 0.002 28.4 10.2 89 89-208 90-189 (300)
93 cd04739 DHOD_like Dihydroorota 60.2 1E+02 0.0022 28.7 10.3 58 89-164 99-162 (325)
94 cd02933 OYE_like_FMN Old yello 60.2 48 0.001 31.0 8.1 44 51-96 50-97 (338)
95 PRK11815 tRNA-dihydrouridine s 59.9 32 0.00069 32.2 6.9 41 87-144 62-102 (333)
96 TIGR00742 yjbN tRNA dihydrouri 59.8 50 0.0011 30.6 8.1 61 86-164 51-122 (318)
97 PF07364 DUF1485: Protein of u 59.1 1.5E+02 0.0032 27.2 11.8 147 76-264 47-198 (292)
98 cd06589 GH31 The enzymes of gl 58.3 44 0.00095 30.0 7.3 53 74-144 66-118 (265)
99 PF04468 PSP1: PSP1 C-terminal 56.7 41 0.00088 24.7 5.6 60 105-165 12-80 (88)
100 PF00834 Ribul_P_3_epim: Ribul 56.5 52 0.0011 28.3 7.1 64 126-211 74-137 (201)
101 cd04738 DHOD_2_like Dihydrooro 54.5 1.8E+02 0.004 27.0 11.4 102 88-208 127-236 (327)
102 PF12876 Cellulase-like: Sugar 54.0 21 0.00046 26.0 3.8 73 127-210 1-88 (88)
103 PRK09936 hypothetical protein; 53.9 1.8E+02 0.0038 26.6 12.8 147 46-214 50-212 (296)
104 cd06600 GH31_MGAM-like This fa 53.2 75 0.0016 29.4 8.1 34 111-144 129-162 (317)
105 cd06602 GH31_MGAM_SI_GAA This 53.1 77 0.0017 29.7 8.3 34 111-144 134-167 (339)
106 PRK03995 hypothetical protein; 52.3 33 0.00072 30.9 5.4 69 88-159 179-260 (267)
107 COG1908 FrhD Coenzyme F420-red 51.6 35 0.00075 26.6 4.6 45 121-167 80-124 (132)
108 PF02065 Melibiase: Melibiase; 51.0 79 0.0017 30.4 8.0 102 71-186 101-236 (394)
109 smart00633 Glyco_10 Glycosyl h 50.8 1.8E+02 0.0039 25.8 10.6 74 77-161 106-180 (254)
110 PRK05286 dihydroorotate dehydr 50.6 1.4E+02 0.003 28.1 9.5 103 88-209 136-246 (344)
111 PRK09505 malS alpha-amylase; R 50.5 33 0.00071 35.5 5.7 29 112-140 434-462 (683)
112 PRK14510 putative bifunctional 49.7 90 0.0019 34.8 9.1 88 72-167 245-365 (1221)
113 cd06599 GH31_glycosidase_Aec37 49.0 64 0.0014 29.9 7.0 68 74-143 73-169 (317)
114 PF04914 DltD_C: DltD C-termin 48.9 78 0.0017 25.2 6.4 59 74-138 36-95 (130)
115 PF13956 Ibs_toxin: Toxin Ibs, 48.0 12 0.00026 18.5 1.1 16 1-16 1-16 (19)
116 COG2342 Predicted extracellula 47.8 64 0.0014 29.2 6.3 81 119-209 126-217 (300)
117 PF02684 LpxB: Lipid-A-disacch 47.4 1.1E+02 0.0025 29.1 8.4 115 73-208 11-140 (373)
118 PF08869 XisI: XisI protein; 47.1 11 0.00024 29.0 1.3 18 243-260 80-97 (111)
119 TIGR01839 PHA_synth_II poly(R) 47.0 45 0.00098 33.5 5.8 50 122-172 237-286 (560)
120 PF14606 Lipase_GDSL_3: GDSL-l 46.6 1.1E+02 0.0024 25.8 7.3 65 72-138 76-141 (178)
121 PF06925 MGDG_synth: Monogalac 46.1 36 0.00079 28.1 4.5 24 238-261 144-168 (169)
122 cd06598 GH31_transferase_CtsZ 46.0 93 0.002 28.8 7.6 31 112-143 135-165 (317)
123 COG3867 Arabinogalactan endo-1 45.9 2.5E+02 0.0053 25.9 14.0 90 72-167 102-209 (403)
124 PRK08091 ribulose-phosphate 3- 45.4 1E+02 0.0022 27.2 7.2 77 108-211 74-150 (228)
125 PRK08005 epimerase; Validated 45.2 96 0.0021 26.9 7.0 75 108-211 64-138 (210)
126 PF01207 Dus: Dihydrouridine s 44.3 81 0.0018 29.1 6.9 98 84-209 48-159 (309)
127 COG0296 GlgB 1,4-alpha-glucan 44.1 1E+02 0.0023 31.4 7.9 93 72-167 212-347 (628)
128 PF01120 Alpha_L_fucos: Alpha- 43.5 2E+02 0.0044 26.9 9.5 85 73-161 137-234 (346)
129 PF08885 GSCFA: GSCFA family; 43.4 73 0.0016 28.5 6.1 57 75-131 153-210 (251)
130 COG1523 PulA Type II secretory 43.2 87 0.0019 32.5 7.4 69 74-144 265-364 (697)
131 cd06593 GH31_xylosidase_YicI Y 42.7 1.1E+02 0.0024 28.0 7.6 66 75-143 67-160 (308)
132 COG0763 LpxB Lipid A disacchar 42.6 1E+02 0.0022 29.3 7.2 112 75-208 16-143 (381)
133 PF07476 MAAL_C: Methylasparta 41.3 2.2E+02 0.0047 25.1 8.3 86 113-215 87-175 (248)
134 PF01487 DHquinase_I: Type I 3 41.2 1.5E+02 0.0033 25.6 7.9 176 72-302 38-224 (224)
135 PRK14866 hypothetical protein; 40.9 60 0.0013 31.6 5.5 69 88-160 183-264 (451)
136 PRK09441 cytoplasmic alpha-amy 40.3 54 0.0012 32.3 5.4 46 113-166 207-252 (479)
137 cd06595 GH31_xylosidase_XylS-l 39.6 1.7E+02 0.0037 26.7 8.1 69 74-144 74-161 (292)
138 TIGR01036 pyrD_sub2 dihydrooro 39.1 2.7E+02 0.0058 26.1 9.5 78 76-165 121-203 (335)
139 COG1453 Predicted oxidoreducta 39.1 2.4E+02 0.0053 26.7 8.9 28 118-145 33-60 (391)
140 smart00812 Alpha_L_fucos Alpha 39.0 1.5E+02 0.0033 28.3 7.9 86 72-161 126-221 (384)
141 PF05691 Raffinose_syn: Raffin 38.8 1.6E+02 0.0034 30.8 8.3 92 73-165 287-415 (747)
142 KOG1552 Predicted alpha/beta h 37.8 59 0.0013 29.1 4.5 47 204-258 88-134 (258)
143 PF02055 Glyco_hydro_30: O-Gly 36.5 1.7E+02 0.0036 29.2 8.0 90 77-167 156-268 (496)
144 PRK13575 3-dehydroquinate dehy 36.3 3E+02 0.0066 24.3 15.5 62 73-142 46-107 (238)
145 PLN02711 Probable galactinol-- 35.9 1.8E+02 0.0039 30.4 8.1 70 74-143 305-409 (777)
146 KOG0183 20S proteasome, regula 35.9 2.9E+02 0.0064 24.0 8.6 85 45-131 63-176 (249)
147 PF00150 Cellulase: Cellulase 35.8 2.7E+02 0.0059 24.5 8.9 86 74-167 62-162 (281)
148 PRK01060 endonuclease IV; Prov 35.7 77 0.0017 28.4 5.3 46 121-167 14-59 (281)
149 PF05763 DUF835: Protein of un 34.8 74 0.0016 25.5 4.4 52 112-164 55-107 (136)
150 KOG3111 D-ribulose-5-phosphate 34.3 2.5E+02 0.0054 24.1 7.4 62 128-211 83-144 (224)
151 PF07582 AP_endonuc_2_N: AP en 34.2 75 0.0016 21.1 3.6 39 122-161 3-42 (55)
152 PF00128 Alpha-amylase: Alpha 34.2 74 0.0016 28.5 5.0 47 112-167 142-188 (316)
153 cd06594 GH31_glucosidase_YihQ 33.9 1.7E+02 0.0038 27.0 7.4 67 74-142 71-166 (317)
154 TIGR02456 treS_nterm trehalose 33.8 1.1E+02 0.0024 30.7 6.4 54 112-167 171-230 (539)
155 PF14488 DUF4434: Domain of un 33.6 2.8E+02 0.006 23.0 10.1 110 46-167 32-151 (166)
156 PF14307 Glyco_tran_WbsX: Glyc 32.8 49 0.0011 31.1 3.5 25 330-354 54-78 (345)
157 PF07745 Glyco_hydro_53: Glyco 32.7 2.4E+02 0.0052 26.4 8.0 89 72-166 56-165 (332)
158 cd07321 Extradiol_Dioxygenase_ 32.6 51 0.0011 23.5 2.8 29 106-134 8-36 (77)
159 PF10566 Glyco_hydro_97: Glyco 32.6 1.4E+02 0.0031 27.0 6.3 74 72-161 71-144 (273)
160 PRK08745 ribulose-phosphate 3- 32.3 1.8E+02 0.004 25.4 6.8 63 127-211 80-142 (223)
161 PF03328 HpcH_HpaI: HpcH/HpaI 32.3 1.7E+02 0.0036 25.3 6.6 73 124-207 13-90 (221)
162 cd01827 sialate_O-acetylestera 32.2 2E+02 0.0044 23.6 7.1 63 73-138 92-154 (188)
163 COG0036 Rpe Pentose-5-phosphat 32.0 2.7E+02 0.0059 24.3 7.6 76 107-211 66-141 (220)
164 COG0429 Predicted hydrolase of 31.9 1.7E+02 0.0037 27.3 6.7 47 118-165 90-146 (345)
165 PRK09810 entericidin A; Provis 31.7 45 0.00098 20.7 2.0 14 1-14 1-14 (41)
166 cd00019 AP2Ec AP endonuclease 31.6 1.2E+02 0.0025 27.2 5.8 44 121-165 12-55 (279)
167 COG5309 Exo-beta-1,3-glucanase 31.6 1.8E+02 0.0039 26.3 6.5 58 80-138 221-279 (305)
168 PRK02412 aroD 3-dehydroquinate 31.5 3.7E+02 0.0081 23.9 13.2 58 75-141 60-118 (253)
169 PF02896 PEP-utilizers_C: PEP- 30.9 92 0.002 28.5 4.9 118 118-247 120-241 (293)
170 COG5185 HEC1 Protein involved 30.4 60 0.0013 31.5 3.6 55 108-165 97-151 (622)
171 TIGR03849 arch_ComA phosphosul 30.3 3.9E+02 0.0085 23.7 11.2 147 75-262 42-194 (237)
172 PRK09722 allulose-6-phosphate 29.9 1.4E+02 0.003 26.4 5.6 76 108-211 65-140 (229)
173 COG0162 TyrS Tyrosyl-tRNA synt 29.9 3.8E+02 0.0081 25.9 8.9 71 88-161 63-138 (401)
174 COG2957 Peptidylarginine deimi 29.8 4.6E+02 0.0099 24.3 8.8 101 82-207 190-291 (346)
175 TIGR01769 GGGP geranylgeranylg 29.8 2.2E+02 0.0048 24.6 6.7 73 112-210 5-78 (205)
176 PLN02334 ribulose-phosphate 3- 29.7 2.8E+02 0.0061 24.1 7.7 67 125-211 81-149 (229)
177 TIGR03234 OH-pyruv-isom hydrox 29.7 79 0.0017 27.9 4.2 20 121-140 16-35 (254)
178 PRK10415 tRNA-dihydrouridine s 29.5 2.9E+02 0.0064 25.6 8.1 21 124-144 82-102 (321)
179 COG3410 Uncharacterized conser 29.3 1.1E+02 0.0024 25.3 4.5 33 111-143 144-176 (191)
180 PLN02982 galactinol-raffinose 29.2 3E+02 0.0065 29.0 8.4 69 74-142 390-492 (865)
181 PLN02161 beta-amylase 28.9 1.5E+02 0.0031 29.4 5.9 43 118-161 117-165 (531)
182 PRK14057 epimerase; Provisiona 28.5 3.3E+02 0.0072 24.4 7.8 84 108-211 81-164 (254)
183 cd01831 Endoglucanase_E_like E 28.2 2.2E+02 0.0047 23.1 6.4 49 73-132 80-128 (169)
184 PLN00197 beta-amylase; Provisi 28.1 1.5E+02 0.0033 29.6 6.0 43 118-161 127-175 (573)
185 PF12138 Spherulin4: Spherulat 27.7 4.4E+02 0.0096 23.5 9.5 79 72-166 51-134 (253)
186 PF04414 tRNA_deacylase: D-ami 27.4 2E+02 0.0042 25.1 6.0 67 91-160 131-208 (213)
187 PF08501 Shikimate_dh_N: Shiki 27.4 2.3E+02 0.0051 20.2 6.7 31 126-161 17-47 (83)
188 cd01828 sialate_O-acetylestera 26.8 3.1E+02 0.0067 22.0 7.1 60 73-138 71-130 (169)
189 PRK13840 sucrose phosphorylase 26.7 2E+02 0.0043 28.6 6.6 54 111-166 166-225 (495)
190 cd00405 PRAI Phosphoribosylant 26.5 1.1E+02 0.0025 26.0 4.5 34 121-164 62-95 (203)
191 cd01841 NnaC_like NnaC (CMP-Ne 26.1 3.5E+02 0.0076 21.8 7.8 64 72-139 73-137 (174)
192 PRK00865 glutamate racemase; P 26.0 2.5E+02 0.0054 25.1 6.8 63 72-141 14-76 (261)
193 PRK08883 ribulose-phosphate 3- 25.8 2.7E+02 0.0059 24.2 6.7 75 108-211 64-138 (220)
194 PLN02803 beta-amylase 25.7 2.1E+02 0.0045 28.6 6.4 43 118-161 107-155 (548)
195 PRK05581 ribulose-phosphate 3- 25.5 3E+02 0.0064 23.5 7.0 64 127-212 79-142 (220)
196 PRK10426 alpha-glucosidase; Pr 25.5 2.5E+02 0.0054 28.9 7.4 65 75-141 270-362 (635)
197 cd00429 RPE Ribulose-5-phospha 25.4 2E+02 0.0043 24.3 5.9 65 125-211 73-137 (211)
198 smart00733 Mterf Mitochondrial 25.3 73 0.0016 17.0 2.2 20 328-348 11-30 (31)
199 KOG3035 Isoamyl acetate-hydrol 25.1 3.6E+02 0.0078 23.7 7.0 66 71-138 97-171 (245)
200 PF10829 DUF2554: Protein of u 25.0 64 0.0014 22.5 2.0 20 1-20 1-20 (76)
201 cd01257 PH_IRS Insulin recepto 24.9 2.9E+02 0.0063 20.8 5.9 61 21-83 24-98 (101)
202 PRK05799 coproporphyrinogen II 24.9 4.7E+02 0.01 24.6 8.8 77 79-161 101-177 (374)
203 PF05990 DUF900: Alpha/beta hy 24.4 4.8E+02 0.01 22.8 8.7 61 87-161 15-88 (233)
204 cd06601 GH31_lyase_GLase GLase 24.1 4.3E+02 0.0094 24.6 8.1 64 76-144 66-135 (332)
205 cd02067 B12-binding B12 bindin 24.0 2.8E+02 0.0061 21.0 6.0 27 73-101 64-91 (119)
206 TIGR00736 nifR3_rel_arch TIM-b 23.9 4.4E+02 0.0095 23.2 7.7 88 89-208 67-168 (231)
207 PLN02801 beta-amylase 23.9 2.4E+02 0.0051 28.0 6.4 42 120-161 38-85 (517)
208 PF08194 DIM: DIM protein; In 23.9 94 0.002 18.6 2.3 14 1-14 1-14 (36)
209 COG1127 Ttg2A ABC-type transpo 23.8 4.2E+02 0.0091 23.7 7.4 43 146-209 178-220 (263)
210 PLN02705 beta-amylase 23.8 2.4E+02 0.0051 28.7 6.4 43 118-161 268-316 (681)
211 PRK08446 coproporphyrinogen II 23.7 4.7E+02 0.01 24.5 8.5 72 81-158 102-173 (350)
212 cd00423 Pterin_binding Pterin 23.7 3.2E+02 0.0068 24.4 7.0 23 237-259 150-172 (258)
213 PF07745 Glyco_hydro_53: Glyco 23.4 6.2E+02 0.013 23.7 11.2 67 81-165 161-229 (332)
214 PLN02361 alpha-amylase 22.9 2.2E+02 0.0047 27.4 6.0 44 112-164 152-196 (401)
215 COG3243 PhaC Poly(3-hydroxyalk 22.8 1.7E+02 0.0036 28.4 5.0 52 120-172 127-179 (445)
216 PF09839 DUF2066: Uncharacteri 22.7 3.7E+02 0.0079 23.6 7.1 76 52-136 103-179 (234)
217 KOG2702 Predicted panthothenat 22.6 56 0.0012 28.9 1.7 85 74-161 105-206 (323)
218 cd02190 epsilon_tubulin The tu 22.4 6.2E+02 0.013 24.1 9.0 84 114-210 79-172 (379)
219 TIGR00542 hxl6Piso_put hexulos 22.3 1.6E+02 0.0035 26.4 4.9 46 121-167 18-64 (279)
220 PRK10081 entericidin B membran 22.2 87 0.0019 20.1 2.1 12 1-12 1-12 (48)
221 PF06745 KaiC: KaiC; InterPro 22.2 3.9E+02 0.0084 22.9 7.2 91 114-214 97-189 (226)
222 TIGR02403 trehalose_treC alpha 22.1 3.3E+02 0.0072 27.3 7.5 52 113-166 168-235 (543)
223 TIGR00539 hemN_rel putative ox 22.0 4.3E+02 0.0093 24.8 7.9 74 81-160 104-177 (360)
224 PRK13347 coproporphyrinogen II 21.9 4.9E+02 0.011 25.4 8.4 41 121-161 190-230 (453)
225 cd04724 Tryptophan_synthase_al 21.4 5.6E+02 0.012 22.5 8.7 66 123-210 95-161 (242)
226 PRK15052 D-tagatose-1,6-bispho 21.3 3.9E+02 0.0084 25.8 7.1 79 57-143 49-128 (421)
227 TIGR01163 rpe ribulose-phospha 21.3 2.6E+02 0.0057 23.6 5.8 65 125-211 72-136 (210)
228 PLN02899 alpha-galactosidase 21.2 2.5E+02 0.0055 28.6 6.2 56 116-184 192-247 (633)
229 PLN03231 putative alpha-galact 21.2 3.3E+02 0.0071 25.8 6.7 58 115-184 159-216 (357)
230 COG5510 Predicted small secret 21.1 57 0.0012 20.4 1.1 12 1-12 1-12 (44)
231 PLN02905 beta-amylase 21.0 2.3E+02 0.0051 28.9 5.8 43 118-161 286-334 (702)
232 PRK05904 coproporphyrinogen II 20.9 6.3E+02 0.014 23.7 8.7 75 80-160 106-180 (353)
233 cd06522 GH25_AtlA-like AtlA is 20.9 3E+02 0.0064 23.2 5.9 41 121-161 76-120 (192)
234 PF08139 LPAM_1: Prokaryotic m 20.6 83 0.0018 17.2 1.5 8 2-9 7-14 (25)
235 COG0635 HemN Coproporphyrinoge 20.5 7.8E+02 0.017 23.8 9.4 74 82-165 142-215 (416)
236 COG0042 tRNA-dihydrouridine sy 20.5 3.5E+02 0.0076 25.1 6.7 136 119-269 79-238 (323)
237 cd01838 Isoamyl_acetate_hydrol 20.3 3.6E+02 0.0079 22.0 6.5 64 73-138 91-162 (199)
No 1
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=4.4e-66 Score=473.40 Aligned_cols=280 Identities=44% Similarity=0.814 Sum_probs=254.4
Q ss_pred CEEEEEEcCCC-CCCCCCCCCCCCcEEEEeeEEEeCCCcEEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCC
Q 040722 26 WIRVGYLNLSK-VSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNY 104 (355)
Q Consensus 26 ~~vvgy~~~~~-~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~ 104 (355)
-+++|||++|. .+.+++++.++||||+|+|+.++++++.+... +.+...+..+.+.+|+++|++|+++|||||+. ++
T Consensus 3 ~~~~~Y~~~w~~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~-~s 80 (299)
T cd02879 3 IVKGGYWPAWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVIS-PSDESEFSTFTETVKRKNPSVKTLLSIGGGGS-DS 80 (299)
T ss_pred eEEEEEECCCCCCCChhHCCcccCCEEEEEEEEecCCCCEEeec-cccHHHHHHHHHHHHHhCCCCeEEEEEeCCCC-CC
Confidence 47899999987 89999999999999999999999988788877 55667788888889999999999999999986 57
Q ss_pred cchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEe
Q 040722 105 SIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARF 184 (355)
Q Consensus 105 ~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~ 184 (355)
+.|+.++++++.|++||+++++++++|+|||||||||+|..++|+.+|+.||++||+ +|+++.+.+| +++++||+++
T Consensus 81 ~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~-~l~~~~~~~~--~~~~~ls~av 157 (299)
T cd02879 81 SAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRA-AVKDEARSSG--RPPLLLTAAV 157 (299)
T ss_pred chhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHH-HHHHHhhccC--CCcEEEEeec
Confidence 899999999999999999999999999999999999999887899999999999999 9997765555 4569999999
Q ss_pred cCCCCC-----C-ccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCCCCCCceEE
Q 040722 185 LYSPPA-----N-SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVM 258 (355)
Q Consensus 185 ~~~~~~-----~-~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~~~~Kl~l 258 (355)
|+.+.. . .|+++++.++||||+||+||++++|....++|++||+.+.. ..+++.+|++|++.|+|++||+|
T Consensus 158 ~~~~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~---~~~~~~~v~~~~~~g~p~~Klvl 234 (299)
T cd02879 158 YFSPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNS---NVSTDYGIKSWIKAGVPAKKLVL 234 (299)
T ss_pred ccchhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCC---CCCHHHHHHHHHHcCCCHHHEEE
Confidence 876643 2 78999999999999999999999998777899999997654 46899999999999999999999
Q ss_pred eeecceeeeeecCCCCCCCCCcccCCCCCCCcccchHHHHHHHHhCCCCeeEEEecceeEEEEEeCCEEEEECCHHHHHH
Q 040722 259 GLPFYGYAWTLVKPEDNGIGAAATGPALHGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFSTRTIWFGFDDVEAVRA 338 (355)
Q Consensus 259 glp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~S~~~ 338 (355)
|+|+|||.|++ ||+.+++||.+.+++||+|||++|++.
T Consensus 235 Gvp~YGr~~~~------------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~ 272 (299)
T cd02879 235 GLPLYGRAWTL------------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAV 272 (299)
T ss_pred Eeccccccccc------------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHH
Confidence 99999999952 777788999998999999999999999
Q ss_pred HHHHHHHcCCceEEEeC
Q 040722 339 KIAYAKEKRLLGYYVWR 355 (355)
Q Consensus 339 K~~~~~~~glgGv~iW~ 355 (355)
|++||+++||||+++|+
T Consensus 273 K~~~a~~~~lgGv~~W~ 289 (299)
T cd02879 273 KVKYAKQKGLLGYFAWA 289 (299)
T ss_pred HHHHHHhCCCCeEEEEE
Confidence 99999999999999996
No 2
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=1.1e-64 Score=478.66 Aligned_cols=313 Identities=29% Similarity=0.489 Sum_probs=272.8
Q ss_pred EEEEEcCCC-------CCCCCCCCCCCCcEEEEeeEEEeCCCcEEeeCCCC---ChhHHHHHHHHHHhhCCCcEEEEEEe
Q 040722 28 RVGYLNLSK-------VSTISGINYDLFTHLICPSADINSTTYQLSLSLPS---DDNQIAKFVDTVEKENPSITILLSIG 97 (355)
Q Consensus 28 vvgy~~~~~-------~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lk~~~p~~kvllsiG 97 (355)
|+|||++|. .|.++++|.++||||+|+|+.++++| ++....+. +...+..+. .+|+++|++||++|||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g-~~~~~~~~~d~~~~~~~~~~-~lk~~~p~lkvlisiG 78 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDG-NIIILDEWNDIDLGLYERFN-ALKEKNPNLKTLLAIG 78 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCC-CEEecCchhhhhhhHHHHHH-HHHhhCCCceEEEEEc
Confidence 689999954 46789999999999999999999986 44443122 345566665 6999999999999999
Q ss_pred CCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC----CcccchHHHHHHHHHHHHhhHHHhhccC
Q 040722 98 QGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT----STDMFNVGLLFDEWRIAATKLEAKNSSR 173 (355)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~----~~~~~~~~~~l~~l~~~~l~~~~~~~g~ 173 (355)
||.. +++.|+.++++++.|++||+++++++++|+|||||||||+|.. ++++.+|+.||++||+ +|++.
T Consensus 79 G~~~-~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~-~l~~~------ 150 (362)
T cd02872 79 GWNF-GSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELRE-AFEPE------ 150 (362)
T ss_pred CCCC-CcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHH-HHHhh------
Confidence 9986 5678999999999999999999999999999999999999974 4788999999999999 99865
Q ss_pred CCCcEEEEEEecCCCCCC--ccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCC---CCcccHHHHHHHHHH
Q 040722 174 QQSQLILTARFLYSPPAN--SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSG---GFARSTDQVLKAWIE 248 (355)
Q Consensus 174 ~~~~~~ls~a~~~~~~~~--~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~---~~~~~~~~~v~~~~~ 248 (355)
+++++||+++|+.+... .||+++|.+++|+|+||+||++++|. ..++|++||++.... ....+++.+|++|++
T Consensus 151 -~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~~-~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~ 228 (362)
T cd02872 151 -APRLLLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSWE-GVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLS 228 (362)
T ss_pred -CcCeEEEEEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCCC-CCCCCCCCCCCCCCCccccccccHHHHHHHHHH
Confidence 34699999999765432 68999999999999999999999874 568999999863321 224689999999999
Q ss_pred CCCCCCceEEeeecceeeeeecCCCCCCCCCcccCCCC-----CCCcccchHHHHHHHHhCCCCeeEEEecceeEEEEEe
Q 040722 249 RGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPAL-----HGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFST 323 (355)
Q Consensus 249 ~g~~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~ 323 (355)
.|+|++||+||||+||+.|++.+..+.++|+|+.+++. ...|.++|.|||+.+ ..+ +...||+.+++||++.
T Consensus 229 ~gvp~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~--~~~~~D~~~~~~y~~~ 305 (362)
T cd02872 229 KGAPPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSG--WTVVWDDEQKVPYAYK 305 (362)
T ss_pred cCCCHHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCC--cEEEEeCCcceeEEEE
Confidence 99999999999999999999998888888888876542 567899999999988 667 8999999999999999
Q ss_pred CCEEEEECCHHHHHHHHHHHHHcCCceEEEeC
Q 040722 324 RTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355 (355)
Q Consensus 324 ~~~~i~ydd~~S~~~K~~~~~~~glgGv~iW~ 355 (355)
+++||+|||++|++.|++||+++||||+++|+
T Consensus 306 ~~~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~ 337 (362)
T cd02872 306 GNQWVGYDDEESIALKVQYLKSKGLGGAMVWS 337 (362)
T ss_pred CCEEEEeCCHHHHHHHHHHHHhCCCceEEEEe
Confidence 99999999999999999999999999999996
No 3
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=6.5e-64 Score=477.07 Aligned_cols=318 Identities=25% Similarity=0.435 Sum_probs=259.0
Q ss_pred EEEEEEcCCC-------CCCCCCCCCCC--CcEEEEeeEEEeCCCcEEeeCCCC---ChhHHHHHHHHHHhhCCCcEEEE
Q 040722 27 IRVGYLNLSK-------VSTISGINYDL--FTHLICPSADINSTTYQLSLSLPS---DDNQIAKFVDTVEKENPSITILL 94 (355)
Q Consensus 27 ~vvgy~~~~~-------~~~~~~~~~~~--~thii~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lk~~~p~~kvll 94 (355)
+|||||+.|. .+.+++||..+ ||||+|+|+.++++++++...++. ....+..+. .+|++||++|+|+
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~~~p~lKvll 79 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAIT-SLKRKYPHLKVLL 79 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHH-HHHhhCCCCeEEE
Confidence 4799999854 45688999865 999999999999988787765222 235677775 6999999999999
Q ss_pred EEeCCCCCC----CcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC-------------------------
Q 040722 95 SIGQGMDTN----YSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT------------------------- 145 (355)
Q Consensus 95 siGg~~~~~----~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~------------------------- 145 (355)
|||||...+ ++.|+.++++++.|++||++++++|++|+|||||||||+|..
T Consensus 80 SiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~ 159 (413)
T cd02873 80 SVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSV 159 (413)
T ss_pred eecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccccccc
Confidence 999997511 457999999999999999999999999999999999999863
Q ss_pred -----CcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCC-ccchhhhhccccEEEeeecccCCCCCCC
Q 040722 146 -----STDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN-SYLLNSIQRNLNWVHAVTASYYEPVSTN 219 (355)
Q Consensus 146 -----~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~~~~l~~~vD~v~lm~yd~~~~~~~~ 219 (355)
++|+++|+.||++||+ +|++. .++|++++++..... .+|+++|+++|||||||+||++++|..+
T Consensus 160 ~~~~~~~d~~nf~~Ll~elr~-~l~~~---------~~~ls~av~~~~~~~~~~d~~~l~~~vD~inlMtYD~~g~~~~~ 229 (413)
T cd02873 160 VDEKAAEHKEQFTALVRELKN-ALRPD---------GLLLTLTVLPHVNSTWYFDVPAIANNVDFVNLATFDFLTPERNP 229 (413)
T ss_pred cCCCChhHHHHHHHHHHHHHH-Hhccc---------CcEEEEEecCCchhccccCHHHHhhcCCEEEEEEecccCCCCCC
Confidence 3578999999999999 99743 378999886543322 5899999999999999999999998754
Q ss_pred -CCCCCCcCCCCCCCCCcccHHHHHHHHHHCCCCCCceEEeeecceeeeeecCCCC-CCC--CCccc-----CCCCCCCc
Q 040722 220 -FTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPED-NGI--GAAAT-----GPALHGNG 290 (355)
Q Consensus 220 -~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~~~~Kl~lglp~yG~~~~~~~~~~-~~~--~~~~~-----~~~~~~~g 290 (355)
.+++++||+.........+++.+|++|++.|+|++||+||||+|||.|++..+.. .+. .+++. |+.++.+|
T Consensus 230 ~~~~~~apL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g 309 (413)
T cd02873 230 EEADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPG 309 (413)
T ss_pred CccCcCCccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCc
Confidence 6899999996543222468999999999999999999999999999999876532 221 12333 33446788
Q ss_pred ccchHHHHHHHHhCC------CCeeEEEeccee-EEEEEe-------CCEEEEECCHHHHHHHHHHHHHcCCceEEEeC
Q 040722 291 LVTYKEIKNYIKNYC------PNVQVMYNTIYV-MNYFST-------RTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355 (355)
Q Consensus 291 ~~~y~~i~~~~~~~~------~~~~~~~d~~~~-~~y~~~-------~~~~i~ydd~~S~~~K~~~~~~~glgGv~iW~ 355 (355)
.++|.|||+.+...+ ..+...||++.+ ++|++. +++||+|||++|++.|++||+++||||+|+|+
T Consensus 310 ~l~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~ 388 (413)
T cd02873 310 LLSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFD 388 (413)
T ss_pred cccHHHHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEe
Confidence 999999999876532 124567888776 589882 25899999999999999999999999999996
No 4
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=3.6e-62 Score=457.03 Aligned_cols=314 Identities=31% Similarity=0.521 Sum_probs=270.7
Q ss_pred EEEEEEcCCCC----CCCCCCCCCCCcEEEEeeEEEeCCCcEEeeCCCCCh-hHHHHHHHHHHhhCCCcEEEEEEeCCCC
Q 040722 27 IRVGYLNLSKV----STISGINYDLFTHLICPSADINSTTYQLSLSLPSDD-NQIAKFVDTVEKENPSITILLSIGQGMD 101 (355)
Q Consensus 27 ~vvgy~~~~~~----~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lk~~~p~~kvllsiGg~~~ 101 (355)
+++|||++|.. +.+++++.++||||+|+|+.++++| ++.+.++... ..+..+. .+|+++|++|++++||||..
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~-~l~~~~~~~kvl~svgg~~~ 78 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDG-TVTIGDEWADIGNFGQLK-ALKKKNPGLKVLLSIGGWTE 78 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCC-CEeeCCcchhhhhHHHHH-HHHHhCCCCEEEEEEeCCCC
Confidence 48999999763 7899999999999999999999965 7777622222 3566664 68999999999999999975
Q ss_pred CCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCC-cccchHHHHHHHHHHHHhhHHHhhccCCCCcEEE
Q 040722 102 TNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS-TDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLIL 180 (355)
Q Consensus 102 ~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~-~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~l 180 (355)
++.|+.++++++.|++|++++++++++|+|||||||||+|... .++.+|+.||++||+ +|+++++. +++++|
T Consensus 79 --s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~-~l~~~~~~----~~~~~l 151 (334)
T smart00636 79 --SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELRE-ALDKEGAE----GKGYLL 151 (334)
T ss_pred --CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHH-HHHHhccc----CCceEE
Confidence 6889999999999999999999999999999999999999763 578899999999999 99865211 246999
Q ss_pred EEEecCCCCCC--ccc-hhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCCCCCCceE
Q 040722 181 TARFLYSPPAN--SYL-LNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLV 257 (355)
Q Consensus 181 s~a~~~~~~~~--~~~-~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~~~~Kl~ 257 (355)
|+++|+.+... .++ ++++.+++|+|+||+||++++|. ..++|+|||+.........+++.+|+.|++.|+|++||+
T Consensus 152 si~v~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~-~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~Klv 230 (334)
T smart00636 152 TIAVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWS-NPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLV 230 (334)
T ss_pred EEEecCChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCC-CCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeE
Confidence 99999765543 578 59999999999999999999874 478999999864331124689999999999999999999
Q ss_pred EeeecceeeeeecCCCCCCCCCcccCCCC-----CCCcccchHHHHHHHHhCCCCeeEEEecceeEEEEEe-C-CEEEEE
Q 040722 258 MGLPFYGYAWTLVKPEDNGIGAAATGPAL-----HGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFST-R-TIWFGF 330 (355)
Q Consensus 258 lglp~yG~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~-~-~~~i~y 330 (355)
||||+||+.|++.++.+.++++|+.|++. ..+|.++|.|||+.+ + +...||+.+++||.+. + ++||+|
T Consensus 231 lGip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~--~~~~~d~~~~~~y~~~~~~~~~v~y 305 (334)
T smart00636 231 LGIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---G--ATVVWDDTAKAPYAYNPGTGQWVSY 305 (334)
T ss_pred EeeccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---C--cEEEEcCCCceeEEEECCCCEEEEc
Confidence 99999999999998888888888877643 467889999999975 5 8999999999999995 4 599999
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEeC
Q 040722 331 DDVEAVRAKIAYAKEKRLLGYYVWR 355 (355)
Q Consensus 331 dd~~S~~~K~~~~~~~glgGv~iW~ 355 (355)
||++|++.|++||+++|||||++|+
T Consensus 306 dd~~Si~~K~~~~~~~~lgGv~iW~ 330 (334)
T smart00636 306 DDPRSIKAKADYVKDKGLGGVMIWE 330 (334)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 9999999999999999999999995
No 5
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=8.2e-62 Score=453.79 Aligned_cols=305 Identities=18% Similarity=0.245 Sum_probs=249.0
Q ss_pred EEEEEEcCCC------CCCCCCCCCCCCcEEEEeeEEEeCCCcEEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEeCCC
Q 040722 27 IRVGYLNLSK------VSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGM 100 (355)
Q Consensus 27 ~vvgy~~~~~------~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGg~~ 100 (355)
++||||++|. .+.+++||.++||||+|+|+.+++++ ++... + ....+..+. .+| ++|+++|||||.
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g-~l~~~-~-~~~~~~~~~-~~k----~lkvllsiGG~~ 72 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDF-SVDVS-S-VQEQFSDFK-KLK----GVKKILSFGGWD 72 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCC-eEeec-c-cHHHHHHHH-hhc----CcEEEEEEeCCC
Confidence 5899999974 46788999999999999999999875 77665 2 344455554 232 399999999998
Q ss_pred CCCC-----cchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC----------CcccchHHHHHHHHHHHHhh
Q 040722 101 DTNY-----SIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT----------STDMFNVGLLFDEWRIAATK 165 (355)
Q Consensus 101 ~~~~-----~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~----------~~~~~~~~~~l~~l~~~~l~ 165 (355)
. +. ..|+.++ ++++|++||+++++++++|+|||||||||+|.. ++|+++|+.||++||+ +|+
T Consensus 73 ~-s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~-~l~ 149 (345)
T cd02878 73 F-STSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKS-KLP 149 (345)
T ss_pred C-CCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHH-HhC
Confidence 6 22 2488888 999999999999999999999999999999863 3578999999999999 996
Q ss_pred HHHhhccCCCCcEEEEEEecCCCCCC-ccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCC---C-CCCCcccHH
Q 040722 166 LEAKNSSRQQSQLILTARFLYSPPAN-SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGS---S-SGGFARSTD 240 (355)
Q Consensus 166 ~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~---~-~~~~~~~~~ 240 (355)
+ +++||+++|+.+... .||++++.+++|||+||+||++++|... +.+++|.... . ......+++
T Consensus 150 ~----------~~~ls~a~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~-~~~~~p~~p~~~~~~~~~~~~~~~ 218 (345)
T cd02878 150 S----------GKSLSIAAPASYWYLKGFPIKDMAKYVDYIVYMTYDLHGQWDYG-NKWASPGCPAGNCLRSHVNKTETL 218 (345)
T ss_pred c----------CcEEEEEcCCChhhhcCCcHHHHHhhCcEEEEEeecccCCcCcc-CCcCCCCCCcccccccCCCchhHH
Confidence 3 379999998765544 7999999999999999999999998642 3444442110 0 000123588
Q ss_pred HHHHHHHHCCCCCCceEEeeecceeeeeecCCCCCCCCCcccCCCC--------CCCcccchHHHHHHH-HhCCCCeeEE
Q 040722 241 QVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPAL--------HGNGLVTYKEIKNYI-KNYCPNVQVM 311 (355)
Q Consensus 241 ~~v~~~~~~g~~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~y~~i~~~~-~~~~~~~~~~ 311 (355)
.+|+.|++.|+|++||+||+|+|||.|++.++.++++++|+.|++. +..+.+.|.++|..+ ...+ +...
T Consensus 219 ~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~--~~~~ 296 (345)
T cd02878 219 DALSMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSK--NKRW 296 (345)
T ss_pred HHHHHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCC--CcEE
Confidence 9999999999999999999999999999999999999999987742 233455569999854 4456 8999
Q ss_pred EecceeEEEE-EeCCEEEEECCHHHHHHHHHHHHHcCCceEEEeC
Q 040722 312 YNTIYVMNYF-STRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355 (355)
Q Consensus 312 ~d~~~~~~y~-~~~~~~i~ydd~~S~~~K~~~~~~~glgGv~iW~ 355 (355)
||+.+++||. +.+++||+|||++|++.|++||+++||||+++|+
T Consensus 297 ~d~~~~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ 341 (345)
T cd02878 297 YDTDSDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWA 341 (345)
T ss_pred EecCCCccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEee
Confidence 9999999997 4677999999999999999999999999999996
No 6
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=1.4e-61 Score=449.36 Aligned_cols=282 Identities=26% Similarity=0.426 Sum_probs=243.6
Q ss_pred EEEEEcCCCCCCCC-----CCCCCCCcEEEEeeEEEeCCCcEEeeC------------------CCCChhHHHHHHHHHH
Q 040722 28 RVGYLNLSKVSTIS-----GINYDLFTHLICPSADINSTTYQLSLS------------------LPSDDNQIAKFVDTVE 84 (355)
Q Consensus 28 vvgy~~~~~~~~~~-----~~~~~~~thii~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~lk 84 (355)
|+|||++|..+... ++|.++||||+|+|+.+++++..+... .+.....+..+. .+|
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk 79 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLR-KLK 79 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHH-HHH
Confidence 58999998765433 488999999999999999988554322 122345567775 699
Q ss_pred hhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC---------CcccchHHHH
Q 040722 85 KENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT---------STDMFNVGLL 155 (355)
Q Consensus 85 ~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~---------~~~~~~~~~~ 155 (355)
+++|++|++++||||.. ++.|+.++++++.|++|++++++++++|+|||||||||+|.. ++++.+|+.|
T Consensus 80 ~~~p~lkvl~siGG~~~--s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~l 157 (322)
T cd06548 80 QKNPHLKILLSIGGWTW--SGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLL 157 (322)
T ss_pred HhCCCCEEEEEEeCCCC--CCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHH
Confidence 99999999999999985 689999999999999999999999999999999999999975 4788999999
Q ss_pred HHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCC-ccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCC-C
Q 040722 156 FDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN-SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSS-G 233 (355)
Q Consensus 156 l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~-~ 233 (355)
|++||+ +|++++..+ +++++||+++|+.+... .++++++.++||+|+||+||++++|. ..++|+|||+.... +
T Consensus 158 l~~Lr~-~l~~~~~~~---~~~~~Ls~av~~~~~~~~~~~~~~l~~~vD~vnlMtYD~~g~w~-~~~g~~spL~~~~~~~ 232 (322)
T cd06548 158 LKELRE-ALDALGAET---GRKYLLTIAAPAGPDKLDKLEVAEIAKYLDFINLMTYDFHGAWS-NTTGHHSNLYASPADP 232 (322)
T ss_pred HHHHHH-HHHHhhhcc---CCceEEEEEccCCHHHHhcCCHHHHhhcCCEEEEEEeeccCCCC-CCCCCCCCCCCCCCCC
Confidence 999999 999864443 35699999999876543 68899999999999999999999986 57899999996432 1
Q ss_pred CCcccHHHHHHHHHHCCCCCCceEEeeecceeeeeecCCCCCCCCCcccCCCCCCCcccchHHHHHHHHhCCCCeeEEEe
Q 040722 234 GFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPALHGNGLVTYKEIKNYIKNYCPNVQVMYN 313 (355)
Q Consensus 234 ~~~~~~~~~v~~~~~~g~~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d 313 (355)
....+++.+++.|++.|+|++||+||||+|||.|++ +...||
T Consensus 233 ~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~--------------------------------------~~~~~D 274 (322)
T cd06548 233 PGGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG--------------------------------------YTRYWD 274 (322)
T ss_pred CCCccHHHHHHHHHHcCCCHHHeEEEecccccccCC--------------------------------------cEEEEc
Confidence 225789999999999999999999999999999953 467999
Q ss_pred cceeEEEEEeC--CEEEEECCHHHHHHHHHHHHHcCCceEEEeC
Q 040722 314 TIYVMNYFSTR--TIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355 (355)
Q Consensus 314 ~~~~~~y~~~~--~~~i~ydd~~S~~~K~~~~~~~glgGv~iW~ 355 (355)
+.+++||++.+ ++||+|||++|++.|++||+++||||+++|+
T Consensus 275 ~~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~ 318 (322)
T cd06548 275 EVAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWE 318 (322)
T ss_pred CCcceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEe
Confidence 99999999966 8999999999999999999999999999996
No 7
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-61 Score=458.63 Aligned_cols=323 Identities=27% Similarity=0.471 Sum_probs=276.8
Q ss_pred CCCEEEEEEcCCC-CCCCCCCCCCCCcEEEEeeEEEeCCCcEEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEeCCCCC
Q 040722 24 KPWIRVGYLNLSK-VSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDT 102 (355)
Q Consensus 24 ~~~~vvgy~~~~~-~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~ 102 (355)
..++.+|||..+. ...+.+++..+|||+||+|+.++.++ .+.+..+.....|..+.+.+|.++|++|+|+|||||.+
T Consensus 56 c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~-~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG~~~- 133 (432)
T KOG2806|consen 56 CEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVG-YVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIGGSHG- 133 (432)
T ss_pred ccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccc-cEEeccchhhhhhHHHHHHHHhhCCCceEEEEecCCCC-
Confidence 4567788888877 78899999999999999999999988 44444255566788888999999999999999999954
Q ss_pred CCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCC-CCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEE
Q 040722 103 NYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPN-TSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILT 181 (355)
Q Consensus 103 ~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~-~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls 181 (355)
++..|+.+++|++.|+.||+++++++++|+|||||||||+|. .+.|+.+|..|++|||. +|.++.+.++ .....|+
T Consensus 134 ns~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~-~~~~~~~~~~--~~~~~l~ 210 (432)
T KOG2806|consen 134 NSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRS-AFARETLKSP--DTAKVLE 210 (432)
T ss_pred CccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHH-HHHHHhhccC--Cccceee
Confidence 688999999999999999999999999999999999999996 45899999999999999 9999977776 3333555
Q ss_pred EEecCCCC--CC-ccchhhhhccccEEEeeecccCCCCCCC-CCCCCCcCCCCCC-CCCcccHHHHHHHHHHCCCCCCce
Q 040722 182 ARFLYSPP--AN-SYLLNSIQRNLNWVHAVTASYYEPVSTN-FTAPPAALYGSSS-GGFARSTDQVLKAWIERGLSADKL 256 (355)
Q Consensus 182 ~a~~~~~~--~~-~~~~~~l~~~vD~v~lm~yd~~~~~~~~-~~~~~apl~~~~~-~~~~~~~~~~v~~~~~~g~~~~Kl 256 (355)
.++.+.+. .. .||+++|.+++||||||+||++|+|+.+ .+||+||||.+.. .....+++..+++|++.|.|++||
T Consensus 211 ~~v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~Kl 290 (432)
T KOG2806|consen 211 AVVADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSKL 290 (432)
T ss_pred eccccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchhe
Confidence 55555433 23 8999999999999999999999999864 7999999997643 333679999999999999999999
Q ss_pred EEeeecceeeeeecCCCCCCCCCcccCCC------CCCCcccchHHHHHHHHhCCCCeeEEEecceeEEEEEe--CCEEE
Q 040722 257 VMGLPFYGYAWTLVKPEDNGIGAAATGPA------LHGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFST--RTIWF 328 (355)
Q Consensus 257 ~lglp~yG~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~--~~~~i 328 (355)
+||+|+||+.|++.+.... ++.+..+++ ....|.++|.|||+...+.+ ...||+.++.||++. +++||
T Consensus 291 ~~gip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~---~~~~d~~~~~~Y~~~~~~~~wv 366 (432)
T KOG2806|consen 291 VLALPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG---VTHWDEETQTPYLYNIPYDQWV 366 (432)
T ss_pred EEEEecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC---CceecCCceeeeEEecCCCeEE
Confidence 9999999999999987665 444433332 23678999999999655444 689999999999998 99999
Q ss_pred EECCHHHHHHHHHHHHHcCCceEEEeC
Q 040722 329 GFDDVEAVRAKIAYAKEKRLLGYYVWR 355 (355)
Q Consensus 329 ~ydd~~S~~~K~~~~~~~glgGv~iW~ 355 (355)
+|||++|++.|++||+++||||+++|+
T Consensus 367 tyen~~Si~~K~~Yvk~~~lGGv~iW~ 393 (432)
T KOG2806|consen 367 TYENERSIHIKADYAKDEGLGGVAIWN 393 (432)
T ss_pred ecCCHHHHHHHHHHHHhcCCceEEEEe
Confidence 999999999999999999999999995
No 8
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-60 Score=432.99 Aligned_cols=323 Identities=23% Similarity=0.354 Sum_probs=255.3
Q ss_pred CCCCEEEEEEcCCC-----CCCCCCCCCCCCcEEEEeeEEEeCCCcEEe----eC--------------CCC---ChhHH
Q 040722 23 AKPWIRVGYLNLSK-----VSTISGINYDLFTHLICPSADINSTTYQLS----LS--------------LPS---DDNQI 76 (355)
Q Consensus 23 ~~~~~vvgy~~~~~-----~~~~~~~~~~~~thii~~~~~~~~~~~~~~----~~--------------~~~---~~~~~ 76 (355)
..+++++|||++|+ .|.+.+||++++|||+|+|+.|+.++..+. .+ .++ ....+
T Consensus 35 d~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~~ 114 (441)
T COG3325 35 DDQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGHF 114 (441)
T ss_pred CCCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccchH
Confidence 34689999999976 466789999999999999999999884211 00 011 23345
Q ss_pred HHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC---------Cc
Q 040722 77 AKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT---------ST 147 (355)
Q Consensus 77 ~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~---------~~ 147 (355)
..+ +.+|+++|++|+++|||||+. |..|+.++.+.++|++|+++++++|++|+|||||||||||++ +.
T Consensus 115 ~~L-~~lk~~~~d~k~l~SIGGWs~--S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~ 191 (441)
T COG3325 115 GAL-FDLKATYPDLKTLISIGGWSD--SGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPK 191 (441)
T ss_pred HHH-HHHhhhCCCceEEEeeccccc--CCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcc
Confidence 655 479999999999999999996 899999999999999999999999999999999999999985 57
Q ss_pred ccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCC-ccchhhhhccccEEEeeecccCCCCCCCCCCCCCc
Q 040722 148 DMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN-SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAA 226 (355)
Q Consensus 148 ~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~ap 226 (355)
+.++|+.||++||+ +|+.++..+| ++++||+|.|+++... ..+..++.+++||||+|||||+|+| ...++|++|
T Consensus 192 d~~ny~~Ll~eLR~-~LD~a~~edg---r~Y~LTiA~~as~~~l~~~~~~~~~~~vDyiNiMTYDf~G~W-n~~~Gh~a~ 266 (441)
T COG3325 192 DKANYVLLLQELRK-KLDKAGVEDG---RHYQLTIAAPASKDKLEGLNHAEIAQYVDYINIMTYDFHGAW-NETLGHHAA 266 (441)
T ss_pred cHHHHHHHHHHHHH-HHhhcccccC---ceEEEEEecCCchhhhhcccHHHHHHHHhhhheeeeeccccc-ccccccccc
Confidence 78999999999999 9999987775 6799999999887755 7788999999999999999999998 456899999
Q ss_pred CCC-CCCC-----CC----cccHHHHHHHHHHCCCCCCceEEeeecceeeeeecCCCCC----CCCCcccC--C--CCCC
Q 040722 227 LYG-SSSG-----GF----ARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDN----GIGAAATG--P--ALHG 288 (355)
Q Consensus 227 l~~-~~~~-----~~----~~~~~~~v~~~~~~g~~~~Kl~lglp~yG~~~~~~~~~~~----~~~~~~~~--~--~~~~ 288 (355)
||+ +.++ +. .......++.....++||+||+||+|+|||.|...+.... ...+.+.. + +++.
T Consensus 267 Ly~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~ 346 (441)
T COG3325 267 LYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWE 346 (441)
T ss_pred cccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCccc
Confidence 995 2221 10 1122235566667789999999999999999988775442 22222221 1 1222
Q ss_pred Cccc--chH---HHH-HHHHhCCCCeeEEEecceeEEEEE--eCCEEEEECCHHHHHHHHHHHHHcCCceEEEeC
Q 040722 289 NGLV--TYK---EIK-NYIKNYCPNVQVMYNTIYVMNYFS--TRTIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355 (355)
Q Consensus 289 ~g~~--~y~---~i~-~~~~~~~~~~~~~~d~~~~~~y~~--~~~~~i~ydd~~S~~~K~~~~~~~glgGv~iW~ 355 (355)
.+.. .|. .+- ...+.++ +.+.||+.+++||++ +.+.+|+|||++|+++|.+||+++||||+|+|+
T Consensus 347 a~n~~~~~~~~~~l~~n~~~~~g--~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We 419 (441)
T COG3325 347 AGNGDKDYGKAYDLDANNAGKNG--YERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWE 419 (441)
T ss_pred ccccCccchhhccccccccCCCC--eeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEE
Confidence 2222 221 111 1122234 999999999999999 678999999999999999999999999999996
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=1.1e-56 Score=421.70 Aligned_cols=319 Identities=29% Similarity=0.483 Sum_probs=267.9
Q ss_pred CEEEEEEcCCCC-----CCCCCCCCCCCcEEEEeeEEEeCCCcEEe-----eCCCCChhHHHHHHHHHHhhCCCcEEEEE
Q 040722 26 WIRVGYLNLSKV-----STISGINYDLFTHLICPSADINSTTYQLS-----LSLPSDDNQIAKFVDTVEKENPSITILLS 95 (355)
Q Consensus 26 ~~vvgy~~~~~~-----~~~~~~~~~~~thii~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lk~~~p~~kvlls 95 (355)
++|+|||+.|+. +.++++|.+.||||+|+|+.++.++.... ...+.....+..+ +.+|+++|++||+++
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kvlls 79 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNL-KELKAKNPGVKVLLS 79 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHH-HHHHHHHTT-EEEEE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHH-HHHHhhccCceEEEE
Confidence 589999999753 56789999999999999999999885532 2323344455555 578899999999999
Q ss_pred EeCCCCCCCc-chhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCC---cccchHHHHHHHHHHHHhhHHHhhc
Q 040722 96 IGQGMDTNYS-IYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS---TDMFNVGLLFDEWRIAATKLEAKNS 171 (355)
Q Consensus 96 iGg~~~~~~~-~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~---~~~~~~~~~l~~l~~~~l~~~~~~~ 171 (355)
|||+.. +. .|..+++++++|++|++++++++++|+|||||||||++... +++.+|..||++||+ +|++.....
T Consensus 80 igg~~~--~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~ 156 (343)
T PF00704_consen 80 IGGWGM--SSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRK-ALKRANRSG 156 (343)
T ss_dssp EEETTS--SHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred eccccc--cccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhh-hhccccccc
Confidence 999976 55 89999999999999999999999999999999999999873 489999999999999 998763221
Q ss_pred cCCCCcEEEEEEecCCCCCC-ccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCC
Q 040722 172 SRQQSQLILTARFLYSPPAN-SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERG 250 (355)
Q Consensus 172 g~~~~~~~ls~a~~~~~~~~-~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g 250 (355)
++++||+++|+.+... .++++++.++||||++|+||++++|.. .++|++|+++........+++.+++.|+..|
T Consensus 157 ----~~~~ls~a~p~~~~~~~~~~~~~l~~~vD~v~~m~yD~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~g 231 (343)
T PF00704_consen 157 ----KGYILSVAVPPSPDYYDKYDYKELAQYVDYVNLMTYDYHGPWSD-VTGPNAPLYDSSWDSNYYSVDSAVQYWIKAG 231 (343)
T ss_dssp ----STSEEEEEEECSHHHHTTHHHHHHHTTSSEEEEETTSSSSTTSS-BETTSSSSSHTTTSGTSSSHHHHHHHHHHTT
T ss_pred ----ceeEEeeccccccccccccccccccccccccccccccCCCCccc-ccccccccccCCccCCCceeeeehhhhcccc
Confidence 2489999999765533 568999999999999999999998766 8899999986543112568999999999999
Q ss_pred CCCCceEEeeecceeeeeecCCCCCCCCCcc---cCCCCCCCcccchHHHHHHHHhCCCCeeEEEecceeEEEEEeC--C
Q 040722 251 LSADKLVMGLPFYGYAWTLVKPEDNGIGAAA---TGPALHGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFSTR--T 325 (355)
Q Consensus 251 ~~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~--~ 325 (355)
+|++||+||+|+||+.|++..+......++. .+.++...+.++|.++|..+..++ +...||+..++||.+.. +
T Consensus 232 ~p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~y~~~~~~~ 309 (343)
T PF00704_consen 232 VPPSKLVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNG--YTVQWDDTAQAPYAYNDDKK 309 (343)
T ss_dssp STGGGEEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTT--EEEEEETTTTEEEEEETTTT
T ss_pred CChhheeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCC--cceEEeecccceEEEecCCC
Confidence 9999999999999999999988777766554 344556778999999999998888 99999999999999965 7
Q ss_pred EEEEECCHHHHHHHHHHHHHcCCceEEEeC
Q 040722 326 IWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355 (355)
Q Consensus 326 ~~i~ydd~~S~~~K~~~~~~~glgGv~iW~ 355 (355)
+||+|||++|+++|++|++++||||+++|+
T Consensus 310 ~~i~~e~~~Si~~K~~~v~~~glgGv~~W~ 339 (343)
T PF00704_consen 310 HWISYEDPRSIKAKMDYVKEKGLGGVAIWS 339 (343)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT-SEEEEET
T ss_pred eEEEeCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999999999999999999999999999996
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=1.1e-54 Score=402.76 Aligned_cols=283 Identities=17% Similarity=0.218 Sum_probs=233.8
Q ss_pred EEEEEEcCCC--CCCCCCCCCCCCcEEEEeeEEEeCCCcEEeeCCCCChhHHHHHHHHHHhhCCCcEEE--EEEeCCCCC
Q 040722 27 IRVGYLNLSK--VSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITIL--LSIGQGMDT 102 (355)
Q Consensus 27 ~vvgy~~~~~--~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvl--lsiGg~~~~ 102 (355)
.++|||++|. .+.+.+++.++||||+++|+.++++|+.+... +..+.. ..+++.+|+++|++||+ +++|||..
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~-~~~~~~-~~~~~~lk~~~~~lkvlp~i~~gg~~~- 80 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIE-GTHDID-KGWIEEVRKANKNIKILPRVLFEGWSY- 80 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCeeeee-cCcchh-hHHHHHHHhhCCCcEEEeEEEECCCCH-
Confidence 5799999976 45677888999999999999999988656554 221111 22445789999999999 77799863
Q ss_pred CCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEE-eeCCCC---CcccchHHHHHHHHHHHHhhHHHhhccCCCCcE
Q 040722 103 NYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFA-WTAPNT---STDMFNVGLLFDEWRIAATKLEAKNSSRQQSQL 178 (355)
Q Consensus 103 ~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGidid-we~~~~---~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~ 178 (355)
+.|+.+++|++.|++||+++++++++||||||||| ||+|.. ++++.+|+.||++||+ +|++. ++
T Consensus 81 --~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~-~l~~~---------~~ 148 (318)
T cd02876 81 --QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGE-TLHSA---------NL 148 (318)
T ss_pred --HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHH-HHhhc---------CC
Confidence 47999999999999999999999999999999999 999975 3588999999999999 99864 26
Q ss_pred EEEEEecCCCCC-------CccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCC-
Q 040722 179 ILTARFLYSPPA-------NSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERG- 250 (355)
Q Consensus 179 ~ls~a~~~~~~~-------~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g- 250 (355)
.+++++|+.... ..+|+++|+++||+|+|||||++++ ..++|+||++ +++.+++++++.|
T Consensus 149 ~l~~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~---~~~g~~apl~---------~v~~~v~~~~~~~~ 216 (318)
T cd02876 149 KLILVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP---QRPGPNAPLS---------WVRSCLELLLPESG 216 (318)
T ss_pred EEEEEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCC---CCCCCCCCcH---------HHHHHHHHHHhcCC
Confidence 677777654321 1689999999999999999999975 5789999985 8999999999987
Q ss_pred CCCCceEEeeecceeeeeecCCCCCCCCCcccCCCCCCCcccchHHHHHHHHhCCCCeeEEEecceeE-EEEEeC---CE
Q 040722 251 LSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPALHGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVM-NYFSTR---TI 326 (355)
Q Consensus 251 ~~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~-~y~~~~---~~ 326 (355)
+|++||+||||+|||.|++.+ .+ +.+++.+.++++.+.+ +...||+.+.. +|.+.+ ++
T Consensus 217 vp~~KlvlGip~YG~~w~~~~-----~~-----------~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~~~~ 278 (318)
T cd02876 217 KKRAKILLGLNFYGNDYTLPG-----GG-----------GAITGSEYLKLLKSNK--PKLQWDEKSAEHFFEYKNKGGKH 278 (318)
T ss_pred CCHHHeEEeccccccccccCC-----CC-----------ceeehHHHHHHHHhcC--CCceeccCCCcceEEEecCCCcE
Confidence 999999999999999998653 11 2344456666666677 88999999655 467743 79
Q ss_pred EEEECCHHHHHHHHHHHHHcCCceEEEeC
Q 040722 327 WFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355 (355)
Q Consensus 327 ~i~ydd~~S~~~K~~~~~~~glgGv~iW~ 355 (355)
||+|||++|++.|+++|+++|| |+++|+
T Consensus 279 ~v~ydd~~Si~~K~~~a~~~~l-Gv~~W~ 306 (318)
T cd02876 279 AVFYPTLKSIQLRLDLAKELGT-GISIWE 306 (318)
T ss_pred EEEeCCHHHHHHHHHHHHHcCC-cEEEEc
Confidence 9999999999999999999999 999996
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=6.8e-52 Score=387.59 Aligned_cols=283 Identities=17% Similarity=0.263 Sum_probs=226.5
Q ss_pred CCCEEEEEEcCCCCCCCCCCCCCCCcEEEEeeEEEeCCCcEEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCC
Q 040722 24 KPWIRVGYLNLSKVSTISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTN 103 (355)
Q Consensus 24 ~~~~vvgy~~~~~~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~ 103 (355)
..+.|+||.... ..-...+++.+|||..+ + +.++ .++...|++ ++||+++ |+.
T Consensus 34 ~~~~~~~~~~~~--~~~~~~~~~~~tti~~~-------~-------~~~~----~~~~~A~~~--~v~v~~~-~~~---- 86 (358)
T cd02875 34 PRFEFLVFSVNS--TNYPNYDWSKVTTIAIF-------G-------DIDD----ELLCYAHSK--GVRLVLK-GDV---- 86 (358)
T ss_pred CceEEEEEEeCC--CcCcccccccceEEEec-------C-------CCCH----HHHHHHHHc--CCEEEEE-Ccc----
Confidence 356889999763 44467889999999976 1 1122 344433444 8999987 222
Q ss_pred CcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC--CcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEE
Q 040722 104 YSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT--STDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILT 181 (355)
Q Consensus 104 ~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~--~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls 181 (355)
+ ...++|+++|++||+++++++++|||||||||||+|.. +.++++|+.||++||+ +|++. ++.++||
T Consensus 87 ~---~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~-~l~~~-------~~~~~Ls 155 (358)
T cd02875 87 P---LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTK-AFKKE-------NPGYQIS 155 (358)
T ss_pred C---HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHH-HHhhc-------CCCcEEE
Confidence 1 24678999999999999999999999999999999974 4678999999999999 99875 4568999
Q ss_pred EEecCCCCCC---ccchhhhhccccEEEeeecccCCC-CC-CCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCCCCCCce
Q 040722 182 ARFLYSPPAN---SYLLNSIQRNLNWVHAVTASYYEP-VS-TNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKL 256 (355)
Q Consensus 182 ~a~~~~~~~~---~~~~~~l~~~vD~v~lm~yd~~~~-~~-~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~~~~Kl 256 (355)
+++++.+... .||+++|+++||||+|||||+|+. |. ...++|++|+. +++.++++|+..|+|++||
T Consensus 156 vav~~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~---------~v~~~v~~~~~~gvp~~KL 226 (358)
T cd02875 156 FDVAWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYS---------QTLSGYNNFTKLGIDPKKL 226 (358)
T ss_pred EEEecCcccccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCch---------hHHHHHHHHHHcCCCHHHe
Confidence 9998765432 399999999999999999999975 54 34678999873 8999999999999999999
Q ss_pred EEeeecceeeeeecCCC-----CCCCCCcccCCCC--CCCcccchHHHHHHHHhCCCCeeEEEecceeEEEEE-e---CC
Q 040722 257 VMGLPFYGYAWTLVKPE-----DNGIGAAATGPAL--HGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFS-T---RT 325 (355)
Q Consensus 257 ~lglp~yG~~~~~~~~~-----~~~~~~~~~~~~~--~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~---~~ 325 (355)
+||+|+|||.|++.+.. +..++.|..|... ..++.++|.+||+.+++.+ +.+.||+.+++||++ . +.
T Consensus 227 vLGip~YGr~w~~~~~~~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~--~~~~wD~~~~~py~~y~d~~g~ 304 (358)
T cd02875 227 VMGLPWYGYDYPCLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSI--GGRLWDSEQKSPFYNYKDKQGN 304 (358)
T ss_pred EEEeCCCCCceeCCCCcccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCC--CceeeccccccceEEEecCCCc
Confidence 99999999999976543 1123334443321 2345799999999988777 789999999999975 2 22
Q ss_pred -EEEEECCHHHHHHHHHHHHHcCCceEEEeC
Q 040722 326 -IWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355 (355)
Q Consensus 326 -~~i~ydd~~S~~~K~~~~~~~glgGv~iW~ 355 (355)
+||+|||++|++.|++||+++||||+++|+
T Consensus 305 ~~~V~ydD~~Si~~K~~~a~~~gL~Gv~iW~ 335 (358)
T cd02875 305 LHQVWYDNPQSLSIKVAYAKNLGLKGIGMWN 335 (358)
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 799999999999999999999999999995
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=4.9e-51 Score=377.99 Aligned_cols=282 Identities=19% Similarity=0.300 Sum_probs=234.4
Q ss_pred EEEEEEcCCCCC--CCCCCCCCCCcEEEEeeEEEeCCCcEEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEeCCC---C
Q 040722 27 IRVGYLNLSKVS--TISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGM---D 101 (355)
Q Consensus 27 ~vvgy~~~~~~~--~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGg~~---~ 101 (355)
.++|||.+|... ....-..+++|||++.++.+.++| .+... .. ..+++.+|++ ++|++++|||+. .
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g-~~~~~---~~---~~~~~~a~~~--~~kv~~~i~~~~~~~~ 73 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADG-TLTGL---PD---ERLIEAAKRR--GVKPLLVITNLTNGNF 73 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCC-CCCCC---CC---HHHHHHHHHC--CCeEEEEEecCCCCCC
Confidence 589999997654 333446789999999999999987 43322 22 3455555555 899999999986 3
Q ss_pred CCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEE
Q 040722 102 TNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILT 181 (355)
Q Consensus 102 ~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls 181 (355)
+++.++.+++|++.|++|++++++++++|||||||||||++.. +++.+|+.||++||+ +|++. ++.|+
T Consensus 74 -~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~fl~~lr~-~l~~~---------~~~ls 141 (313)
T cd02874 74 -DSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPP-EDREAYTQFLRELSD-RLHPA---------GYTLS 141 (313)
T ss_pred -CHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHHHHHHHH-Hhhhc---------CcEEE
Confidence 4677899999999999999999999999999999999999875 889999999999999 99853 37888
Q ss_pred EEecCCCC-------CCccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCCCCCC
Q 040722 182 ARFLYSPP-------ANSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSAD 254 (355)
Q Consensus 182 ~a~~~~~~-------~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~~~~ 254 (355)
+++++... ...|+++++++++|+|+||+||++++| +.++|++|+. +++..+++++ .|+|++
T Consensus 142 v~~~p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~--~~~gp~a~~~---------~~~~~~~~~~-~gvp~~ 209 (313)
T cd02874 142 TAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRG--GPPGPVAPIG---------WVERVLQYAV-TQIPRE 209 (313)
T ss_pred EEecCccccccccccccccCHHHHHhhCCEEEEEEeccCCCC--CCCCccCChH---------HHHHHHHHHH-hcCCHH
Confidence 88765432 126899999999999999999999875 4678999973 7888887666 789999
Q ss_pred ceEEeeecceeeeeecCCCCCCCCCcccCCCCCCCcccchHHHHHHHHhCCCCeeEEEecceeEEEEE-e----CCEEEE
Q 040722 255 KLVMGLPFYGYAWTLVKPEDNGIGAAATGPALHGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFS-T----RTIWFG 329 (355)
Q Consensus 255 Kl~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~----~~~~i~ 329 (355)
||+||||+||+.|++.++. ....+.++|.++|+++.+.+ +...||+.+++||.. . ..+||+
T Consensus 210 KlvlGip~YG~~w~~~~~~------------~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~g~~~~v~ 275 (313)
T cd02874 210 KILLGIPLYGYDWTLPYKK------------GGKASTISPQQAINLAKRYG--AEIQYDEEAQSPFFRYVDEQGRRHEVW 275 (313)
T ss_pred HEEEeecccccccccCCCC------------CcCccccCHHHHHHHHHHcC--CCeEECcccCCCcEEEEeCCCCEEEEE
Confidence 9999999999999875411 11246788999999998888 899999999999864 2 248999
Q ss_pred ECCHHHHHHHHHHHHHcCCceEEEeC
Q 040722 330 FDDVEAVRAKIAYAKEKRLLGYYVWR 355 (355)
Q Consensus 330 ydd~~S~~~K~~~~~~~glgGv~iW~ 355 (355)
|||++|++.|+++++++||||+++|+
T Consensus 276 y~d~~Si~~K~~~~~~~~lgGv~iW~ 301 (313)
T cd02874 276 FEDARSLQAKFELAKEYGLRGVSYWR 301 (313)
T ss_pred eCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence 99999999999999999999999995
No 13
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=1.9e-47 Score=350.28 Aligned_cols=282 Identities=13% Similarity=0.133 Sum_probs=224.0
Q ss_pred EEEEEEcCCCCCCCCCC--CCCCCcEEEEeeEEEeCCCcEEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCC
Q 040722 27 IRVGYLNLSKVSTISGI--NYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNY 104 (355)
Q Consensus 27 ~vvgy~~~~~~~~~~~~--~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~ 104 (355)
.++|||.+|.....+.+ ....+|||++.|+.+...++.+... .++ .....++.+|.++|.++++.+++|+.. ++
T Consensus 1 ~~l~~~~~w~~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~--~d~-~~~~~~~~~k~~~~~l~~~~~~~~~~~-~~ 76 (298)
T cd06549 1 IALAFYTPWDDASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVF--VDP-QGVAIIAAAKAHPKVLPLVQNISGGAW-DG 76 (298)
T ss_pred CeeEEEecCChhhHHHHHHhhccCCEEeceeEEEecCCCceecc--CCh-HHHHHHHHHHcCCceeEEEEecCCCCC-CH
Confidence 37899999865544433 4678999999999998555577554 222 223344567788888999999988765 56
Q ss_pred cchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEe
Q 040722 105 SIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARF 184 (355)
Q Consensus 105 ~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~ 184 (355)
+.|+.++++++.|++||+++++++++|+|||||||||++.. +++++|+.||++||+ +|++. ++.|++++
T Consensus 77 ~~~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~-~d~~~~~~fl~eL~~-~l~~~---------~~~lsv~v 145 (298)
T cd06549 77 KNIARLLADPSARAKFIANIAAYLERNQADGIVLDFEELPA-DDLPKYVAFLSELRR-RLPAQ---------GKQLTVTV 145 (298)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCh-hHHHHHHHHHHHHHH-Hhhhc---------CcEEEEEe
Confidence 67999999999999999999999999999999999999865 899999999999999 99854 37899999
Q ss_pred cCCCCCCccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCCCCCCceEEeeecce
Q 040722 185 LYSPPANSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYG 264 (355)
Q Consensus 185 ~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~~~~Kl~lglp~yG 264 (355)
|+.+ ..+|++++.+++|+|+||+||+++++ +.++|.+|. .+++..+++. ..++|++||+||||+||
T Consensus 146 ~~~~--~~~d~~~l~~~~D~v~lMtYD~~~~~--~~~gp~a~~---------~~~~~~~~~~-~~~vp~~KlvlGip~YG 211 (298)
T cd06549 146 PADE--ADWNLKALARNADKLILMAYDEHYQG--GAPGPIASQ---------DWFESNLAQA-VKKLPPEKLIVALGSYG 211 (298)
T ss_pred cCCC--CCCCHHHHHHhCCEEEEEEeccCCCC--CCCCCCCCh---------hhHHHHHHHH-HhCCCHHHEEEEecccC
Confidence 8643 36899999999999999999999764 345666654 3667677664 46799999999999999
Q ss_pred eeeeecCCCCCCCCCcccCCCCCCCcccchHHHHHHHHhCCCCeeEEEecceeEEE-EE-e--C-CEEEEECCHHHHHHH
Q 040722 265 YAWTLVKPEDNGIGAAATGPALHGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNY-FS-T--R-TIWFGFDDVEAVRAK 339 (355)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y-~~-~--~-~~~i~ydd~~S~~~K 339 (355)
++|++..+ ...++..+...++.+.+ ..+.||+....|+ .+ . + .++|+|+|++|++.|
T Consensus 212 ~~w~~~~~----------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K 273 (298)
T cd06549 212 YDWTKGGN----------------TKAISSEAAWLLAAHAS--AAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQ 273 (298)
T ss_pred ccccCCCC----------------CcccCHHHHHHHHHHcC--CcceecccccCCceEEEcCCCcEEEEEeccHHHHHHH
Confidence 99976431 12344566666666666 6788988776664 44 2 2 378999999999999
Q ss_pred HHHHHHcCCceEEEeC
Q 040722 340 IAYAKEKRLLGYYVWR 355 (355)
Q Consensus 340 ~~~~~~~glgGv~iW~ 355 (355)
+++|+++||||+++|+
T Consensus 274 ~~~a~~~~l~Gva~W~ 289 (298)
T cd06549 274 LKAVQRLGPAGVALWR 289 (298)
T ss_pred HHHHHHcCCCcEEEEe
Confidence 9999999999999995
No 14
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=1.2e-46 Score=337.89 Aligned_cols=235 Identities=24% Similarity=0.420 Sum_probs=199.9
Q ss_pred EEEEEcCCCCCC--CCCCCCCCCcEEEEeeEEEeCCCcEEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCc
Q 040722 28 RVGYLNLSKVST--ISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYS 105 (355)
Q Consensus 28 vvgy~~~~~~~~--~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~ 105 (355)
|+|||++|+.+. +++++..+||||+++|+.++++| ++... + ....+..+++.+|+ +++||+++|||+.. +
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G-~l~~~-~-~~~~~~~~~~~~~~--~~~kvl~sigg~~~---~ 72 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANG-TLNAN-P-VRSELNSVVNAAHA--HNVKILISLAGGSP---P 72 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCC-eEEec-C-cHHHHHHHHHHHHh--CCCEEEEEEcCCCC---C
Confidence 689999998765 78999999999999999999987 67665 2 23345666665555 48999999999864 3
Q ss_pred chhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEec
Q 040722 106 IYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFL 185 (355)
Q Consensus 106 ~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~ 185 (355)
.+..++++++.|++|++++++++++|+|||||||||+|... +++|..|+++||+ +|++. ++.||++++
T Consensus 73 ~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~-~l~~~---------~~~lt~av~ 140 (253)
T cd06545 73 EFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYA-ALKKE---------GKLLTAAVS 140 (253)
T ss_pred cchhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHH-HHhhc---------CcEEEEEcc
Confidence 46779999999999999999999999999999999999763 7899999999999 99753 378999987
Q ss_pred CCCCCCccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCCC-CCCceEEeeecce
Q 040722 186 YSPPANSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGL-SADKLVMGLPFYG 264 (355)
Q Consensus 186 ~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~-~~~Kl~lglp~yG 264 (355)
+... .+...++.+++|+|+||+||++++|....++|++|+. +++..+++|++.|+ |++||+||||+||
T Consensus 141 ~~~~--~~~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~---------~~~~~v~~~~~~g~ip~~KlvlGlp~YG 209 (253)
T cd06545 141 SWNG--GAVSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD---------DAVNDLNYWNERGLASKDKLVLGLPFYG 209 (253)
T ss_pred Cccc--ccccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH---------hHHHHHHHHHHcCCCCHHHEEEEeCCcc
Confidence 5432 2234667899999999999999998777789999863 78899999999998 9999999999999
Q ss_pred eeeeecCCCCCCCCCcccCCCCCCCcccchHHHHHHHHhCCCCeeEEEecceeEEEEEeCCEEEEECCHHHHHHHHHHHH
Q 040722 265 YAWTLVKPEDNGIGAAATGPALHGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFSTRTIWFGFDDVEAVRAKIAYAK 344 (355)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~ 344 (355)
+.|. |+.+.++..|+++++
T Consensus 210 ~~w~-------------------------------------------------------------~~~~~~~~~~~~~~~ 228 (253)
T cd06545 210 YGFY-------------------------------------------------------------YNGIPTIRNKVAFAK 228 (253)
T ss_pred cccc-------------------------------------------------------------CCCHHHHHHHHHHHH
Confidence 9882 677889999999999
Q ss_pred HcCCceEEEeC
Q 040722 345 EKRLLGYYVWR 355 (355)
Q Consensus 345 ~~glgGv~iW~ 355 (355)
++ +||+|+|+
T Consensus 229 ~~-~gG~~~w~ 238 (253)
T cd06545 229 QN-YGGVMIWE 238 (253)
T ss_pred Hh-cCeEEEEe
Confidence 99 99999996
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=2.5e-36 Score=264.16 Aligned_cols=170 Identities=24% Similarity=0.336 Sum_probs=140.1
Q ss_pred EEEEEcCCCCCCC---CCCCCCCCcEEEEeeEEEeCCCcEEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCC
Q 040722 28 RVGYLNLSKVSTI---SGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNY 104 (355)
Q Consensus 28 vvgy~~~~~~~~~---~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~ 104 (355)
++|||+.|+.... ..++.+.||||+++|+.+++++.............. ..++.+++++|++||+++|||+.. .
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~-~~i~~l~~~~~g~kv~~sigg~~~--~ 77 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLK-GALEELASKKPGLKVLISIGGWTD--S 77 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHH-HHHHHHHHhCCCCEEEEEEcCCCC--C
Confidence 5899999776654 788999999999999999998754432212233333 444568888899999999999875 3
Q ss_pred cchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCc--ccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEE
Q 040722 105 SIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTST--DMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTA 182 (355)
Q Consensus 105 ~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~--~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~ 182 (355)
..+ .++++++.|++|++++++++++|+|||||||||+|.... ++.+|+.|+++||+ +|+++ ++.||+
T Consensus 78 ~~~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~-~l~~~---------~~~ls~ 146 (210)
T cd00598 78 SPF-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRS-ALGAA---------NYLLTI 146 (210)
T ss_pred CCc-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHH-Hhccc---------CcEEEE
Confidence 334 889999999999999999999999999999999998733 48999999999999 99742 489999
Q ss_pred EecCCCCCC--ccchhhhhccccEEEeeecc
Q 040722 183 RFLYSPPAN--SYLLNSIQRNLNWVHAVTAS 211 (355)
Q Consensus 183 a~~~~~~~~--~~~~~~l~~~vD~v~lm~yd 211 (355)
++|+.+... .+++.++.+++|++++|+||
T Consensus 147 a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 147 AVPASYFDLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred EecCChHHhhccCCHHHHHhhCCEEEEeeec
Confidence 999776544 38999999999999999997
No 16
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=9.4e-35 Score=263.99 Aligned_cols=230 Identities=17% Similarity=0.264 Sum_probs=188.7
Q ss_pred CcEEEEEEeCC-----CCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHH
Q 040722 89 SITILLSIGQG-----MDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAA 163 (355)
Q Consensus 89 ~~kvllsiGg~-----~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~ 163 (355)
+++.++.+... +. +++..+.+|.|+..++++++++++.++++|+.|+.||+|.... .|++.|..|++++|. +
T Consensus 160 ~i~~~~~iSN~~~~~~~f-~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~-~DR~~yt~flR~~r~-~ 236 (423)
T COG3858 160 KIKPVPGISNGTRPGANF-GGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGP-GDRELYTDFLRQVRD-A 236 (423)
T ss_pred ccceeEEEecCCcccccc-chHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCH-HHHHHHHHHHHHHHH-H
Confidence 45555555332 22 3456799999999999999999999999999999999998886 999999999999999 9
Q ss_pred hhHHHhhccCCCCcEEEEEEecCCCC-------CCccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCc
Q 040722 164 TKLEAKNSSRQQSQLILTARFLYSPP-------ANSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFA 236 (355)
Q Consensus 164 l~~~~~~~g~~~~~~~ls~a~~~~~~-------~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~ 236 (355)
|++. .+.+|+|+++... ...||+..+.+++|||.||+||.|..| +.+++.||.
T Consensus 237 l~~~---------G~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~g--G~PG~vA~i--------- 296 (423)
T COG3858 237 LHSG---------GYTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG--GPPGPVASI--------- 296 (423)
T ss_pred hccC---------CeEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCC--CCCCcccCc---------
Confidence 9864 3999999997542 226899999999999999999999765 678888886
Q ss_pred ccHHHHHHHHHHCCCCCCceEEeeecceeeeeecCCCCCCCCCcccCCCCCCCcccchHHHHHHHHhCCCCeeEEEecce
Q 040722 237 RSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPALHGNGLVTYKEIKNYIKNYCPNVQVMYNTIY 316 (355)
Q Consensus 237 ~~~~~~v~~~~~~g~~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~ 316 (355)
-+++..+++.+. -+|++||+||+|+||++|.+..+.....- ..+++++..++....+ ..+.||..+
T Consensus 297 ~~vr~~ieya~T-~iP~~Kv~mGip~YGYDW~~~y~~~g~~~-----------~a~~~~~~i~ia~~y~--A~Iq~D~~~ 362 (423)
T COG3858 297 GWVRKVIEYALT-VIPAEKVMMGIPLYGYDWTLPYDPLGYLA-----------RAISPDEAIDIANRYN--ATIQYDATS 362 (423)
T ss_pred hhHhhhhhhhhe-ecchHHeEEccccccccccCCCCCCccee-----------eecCcchhhhhhcccC--CccCcCccc
Confidence 378888877766 49999999999999999987654311111 1144455555555666 899999999
Q ss_pred eEEEEE----eC-CEEEEECCHHHHHHHHHHHHHcCCceEEEeC
Q 040722 317 VMNYFS----TR-TIWFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355 (355)
Q Consensus 317 ~~~y~~----~~-~~~i~ydd~~S~~~K~~~~~~~glgGv~iW~ 355 (355)
+.||++ ++ .++|||||++|+..|++++|++||.||++|.
T Consensus 363 qsp~F~y~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~ 406 (423)
T COG3858 363 QSPFFYYVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWV 406 (423)
T ss_pred cCceEEEEcCCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEE
Confidence 999998 34 6899999999999999999999999999994
No 17
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=2e-33 Score=251.08 Aligned_cols=195 Identities=17% Similarity=0.259 Sum_probs=144.5
Q ss_pred EEEEEEcCCCCC--------CCCCCCCCCCcEEEEeeEEEeCCCcEEeeCCCC-ChhHHHHH---HHHHHhhCCCcEEEE
Q 040722 27 IRVGYLNLSKVS--------TISGINYDLFTHLICPSADINSTTYQLSLSLPS-DDNQIAKF---VDTVEKENPSITILL 94 (355)
Q Consensus 27 ~vvgy~~~~~~~--------~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~lk~~~p~~kvll 94 (355)
|+||||+.|+.. .+..++..+||||||+|+.++.+| ++.+.... +...+..+ ++.+| ++++||++
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G-~l~~~d~~~~~~~~~~~~~~i~~~~--~~g~KVll 77 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDG-NIHLNDHPPDHPRFTTLWTELAILQ--SSGVKVMG 77 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCC-eEEECCCCCCcchhhHHHHHHHHHH--hCCCEEEE
Confidence 589999986422 122456789999999999999976 77776211 22222222 22344 57999999
Q ss_pred EEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCC
Q 040722 95 SIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQ 174 (355)
Q Consensus 95 siGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~ 174 (355)
|||||.. ..|+.++++++.|++|++++++++++|+|||||||||+|.. ..+|..|+++||+ ++.
T Consensus 78 SiGG~~~---~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~---~~~~~~ll~~Lr~-~~~--------- 141 (256)
T cd06546 78 MLGGAAP---GSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMS---LDGIIRLIDRLRS-DFG--------- 141 (256)
T ss_pred EECCCCC---CCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCC---HhHHHHHHHHHHH-HhC---------
Confidence 9999864 34888888999999999999999999999999999999853 4689999999999 884
Q ss_pred CCcEEEEEEecCCC-----C-CCccchhhhh----ccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHH
Q 040722 175 QSQLILTARFLYSP-----P-ANSYLLNSIQ----RNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLK 244 (355)
Q Consensus 175 ~~~~~ls~a~~~~~-----~-~~~~~~~~l~----~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~ 244 (355)
+++.||+++++.. . ...+++.++. .++||+|+|.||.++... .. ....
T Consensus 142 -~~~~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~--------------------~~-~~~~ 199 (256)
T cd06546 142 -PDFIITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMS--------------------SP-SDYD 199 (256)
T ss_pred -CCcEEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCcc--------------------CH-HHHH
Confidence 3489999876432 1 1156776665 599999999999765310 01 1233
Q ss_pred HHHHCCCCCCceEEeeec
Q 040722 245 AWIERGLSADKLVMGLPF 262 (355)
Q Consensus 245 ~~~~~g~~~~Kl~lglp~ 262 (355)
.|+..++|++||++|+|.
T Consensus 200 ~~~~~~~~~~Kv~iGlpa 217 (256)
T cd06546 200 AIVAQGWDPERIVIGLLT 217 (256)
T ss_pred HHHHcCCCcccEEEEEec
Confidence 455668999999999986
No 18
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=100.00 E-value=4.1e-33 Score=247.45 Aligned_cols=203 Identities=14% Similarity=0.117 Sum_probs=145.6
Q ss_pred CCCCCCCCCCCC--CcEEEEeeE-EEeCC----CcEEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchh
Q 040722 36 KVSTISGINYDL--FTHLICPSA-DINST----TYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYS 108 (355)
Q Consensus 36 ~~~~~~~~~~~~--~thii~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~ 108 (355)
...+++++|.+. ||||||+|+ ..+.. ++.+....+.+...+..+. .+|+++|++|||+|||||+...+..+.
T Consensus 11 ~~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lK~~~p~lKvllSiGG~~~~~~~~~~ 89 (253)
T cd06544 11 NGVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAVK-SIKAQHPNVKVVISIGGRGVQNNPTPF 89 (253)
T ss_pred CCccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHHH-HHHHhCCCcEEEEEeCCCCCCCCcccc
Confidence 345789999888 999999999 44331 3344444222333455554 799999999999999999862122233
Q ss_pred hhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCC
Q 040722 109 SMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSP 188 (355)
Q Consensus 109 ~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~ 188 (355)
...+....|++|+++++++|++|||||||||||+|. .++.+|+.|+++||+ +|++. + +++.+++.+..
T Consensus 90 ~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~--~d~~~f~~ll~~l~~-~l~~~-------~--~lt~a~vap~~ 157 (253)
T cd06544 90 DPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP--ADPDTFVECIGQLIT-ELKNN-------G--VIKVASIAPSE 157 (253)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC--cCHHHHHHHHHHHHH-Hhhhc-------C--CeEEEEecCCc
Confidence 333444566777999999999999999999999995 578999999999999 99854 2 33333333333
Q ss_pred CC-CccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCCCCCCceEEeeecceeee
Q 040722 189 PA-NSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAW 267 (355)
Q Consensus 189 ~~-~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~~~~Kl~lglp~yG~~~ 267 (355)
.. ..++++.+.+++|+|++|+||+++.+.. .. ........+.|. .++|++||++|+|++++.|
T Consensus 158 ~~~~~~y~~~~~~~~d~id~~~~qfy~~~~~-----~~----------~~~~~~~~~~~~-~~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 158 DAEQSHYLALYNAYGDYIDYVNYQFYNYGVP-----TT----------VAKYVEFYDEVA-NNYPGKKVLASFSTDGEDG 221 (253)
T ss_pred cccccccHHHHHHhhCceeEEEhhhhCCCCC-----CC----------HHHHHHHHHHHH-hCCCcccEEEEEecCCCcc
Confidence 33 3455888899999999999999986421 11 123334555565 4599999999999999766
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.97 E-value=1e-29 Score=234.46 Aligned_cols=209 Identities=18% Similarity=0.255 Sum_probs=147.8
Q ss_pred CEEEEEEcCCCCCC------CCCCCCCCCcEEEEeeEEEeCCCc-EEeeC-----CCCChhHHHHHHHHHHhhCCCcEEE
Q 040722 26 WIRVGYLNLSKVST------ISGINYDLFTHLICPSADINSTTY-QLSLS-----LPSDDNQIAKFVDTVEKENPSITIL 93 (355)
Q Consensus 26 ~~vvgy~~~~~~~~------~~~~~~~~~thii~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~lk~~~p~~kvl 93 (355)
++++|||++|.... ++.+ .+.||||+++|+.+++++. .+.+. .......+.+.++.+|++ ++|||
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~-~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KVl 77 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDV-PSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAK--GKKVL 77 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccC-CCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHC--CCEEE
Confidence 57899999976443 3333 4889999999999987652 22311 122344566666667765 89999
Q ss_pred EEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCC----cccchHHHHHHHHHHHHhhHHHh
Q 040722 94 LSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS----TDMFNVGLLFDEWRIAATKLEAK 169 (355)
Q Consensus 94 lsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~----~~~~~~~~~l~~l~~~~l~~~~~ 169 (355)
+||||+.. + ..+.+++.|++|++++++++++|+|||||||||+|... .++.+|+.||++||+ ++.
T Consensus 78 lSiGG~~~--~----~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~-~~~---- 146 (312)
T cd02871 78 ISIGGANG--H----VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKD-HYG---- 146 (312)
T ss_pred EEEeCCCC--c----cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHH-HcC----
Confidence 99999864 2 24778899999999999999999999999999998752 367899999999999 884
Q ss_pred hccCCCCcEEEEEEecCCCCC---------C-cc--chhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcc
Q 040722 170 NSSRQQSQLILTARFLYSPPA---------N-SY--LLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFAR 237 (355)
Q Consensus 170 ~~g~~~~~~~ls~a~~~~~~~---------~-~~--~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~ 237 (355)
++++||+|+.+.... . .| .+.++.+++|++++|.||.++.+ ++....+... ..
T Consensus 147 ------~~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~-----~~~~~~~~~~----~~ 211 (312)
T cd02871 147 ------PNFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMG-----GCDGQSYSQG----TA 211 (312)
T ss_pred ------CCeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCcc-----cccccCCccc----hh
Confidence 359999997654221 1 23 36678889999999999987642 1111111100 12
Q ss_pred cHHHHHHHHHHCC-----------CCCCceEEeeecc
Q 040722 238 STDQVLKAWIERG-----------LSADKLVMGLPFY 263 (355)
Q Consensus 238 ~~~~~v~~~~~~g-----------~~~~Kl~lglp~y 263 (355)
....++..++..+ +|++||++|+|+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 212 DFLVALADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHHHHHHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 2333344444444 8999999999974
No 20
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1e-27 Score=208.56 Aligned_cols=285 Identities=14% Similarity=0.143 Sum_probs=220.6
Q ss_pred CCEEEEEEcCCC--CCCCCCCCCCCCcEEEEeeEEEeCCCcEEeeC--CCCChhHHHHHHHHHHhhCCCcEEEEEEeCCC
Q 040722 25 PWIRVGYLNLSK--VSTISGINYDLFTHLICPSADINSTTYQLSLS--LPSDDNQIAKFVDTVEKENPSITILLSIGQGM 100 (355)
Q Consensus 25 ~~~vvgy~~~~~--~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lk~~~p~~kvllsiGg~~ 100 (355)
+.-+.||.++|+ +|.+..+-.+++|||.+.|+.+...|..+... .+.++ .+++++|+++++++++.-+==..
T Consensus 78 ~~~vLayVTPWNs~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~hdid~----gwiralRk~~~~l~ivPR~~fd~ 153 (392)
T KOG2091|consen 78 GGTVLAYVTPWNSHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGKHDIDP----GWIRALRKSGKDLHIVPRFYFDE 153 (392)
T ss_pred CCceEEEecCcCccchhHHHHHhcccceecchheeehhcCcceEEeecccCCh----HHHHHHHHhCCCceeeceehhhh
Confidence 346799999965 78999999999999999999998877544443 12233 36678999999999875543222
Q ss_pred CCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEE-eeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEE
Q 040722 101 DTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFA-WTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLI 179 (355)
Q Consensus 101 ~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGidid-we~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ 179 (355)
. .+.++..++.+++.|++..+.++++++++||||+.|+ |......-.......|++.|.. +++++ +++
T Consensus 154 ~-~~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d~~al~~v~hl~k-~Lhkq---------~l~ 222 (392)
T KOG2091|consen 154 F-TSADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIADKDALELVEHLGK-ALHKQ---------ELQ 222 (392)
T ss_pred c-cchHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHh---------heE
Confidence 2 3678899999999999999999999999999999998 3222211111234567788888 88754 356
Q ss_pred EEEEecCCCCCC--------ccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCCC
Q 040722 180 LTARFLYSPPAN--------SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGL 251 (355)
Q Consensus 180 ls~a~~~~~~~~--------~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~ 251 (355)
+-..+|+....+ .-++..|.+..|.+.+||||+.++ ..++++||+. +++.++..+.-..-
T Consensus 223 ~iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~---~~pg~nap~~---------wi~~~l~~l~~~s~ 290 (392)
T KOG2091|consen 223 AILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV---QGPGPNAPLE---------WIRHCLHHLGGSSA 290 (392)
T ss_pred EEEEeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc---cCCCCCCCHH---------HHHHHHHHhCCccc
Confidence 666666532221 236788999999999999999875 5689999984 89999987654334
Q ss_pred CCCceEEeeecceeeeeecCCCCCCCCCcccCCCCCCCcccchHHHHHHHHhCCCCeeEEEecceeEEEEE-----eCCE
Q 040722 252 SADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPALHGNGLVTYKEIKNYIKNYCPNVQVMYNTIYVMNYFS-----TRTI 326 (355)
Q Consensus 252 ~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-----~~~~ 326 (355)
-+.||.+||.|||++|...+ | .+.++-..-.++++... ....||+++...++- ++++
T Consensus 291 ~r~KiLlGlNFYG~d~~~gd------g----------~~~IT~~rYL~lLk~~k--~~~~~Dees~EH~f~~k~n~~gkh 352 (392)
T KOG2091|consen 291 KRPKILLGLNFYGNDFNLGD------G----------GEAITAKRYLQLLKGEK--SVFKFDEESKEHFFEYKRNDDGKH 352 (392)
T ss_pred cccceeEeeeccccccccCC------C----------CCceeHHHHHHHHhccC--cceeeccccchhheeeeccCCCce
Confidence 46899999999999997522 1 36788888888898888 789999999877765 4578
Q ss_pred EEEECCHHHHHHHHHHHHHcCCceEEEeC
Q 040722 327 WFGFDDVEAVRAKIAYAKEKRLLGYYVWR 355 (355)
Q Consensus 327 ~i~ydd~~S~~~K~~~~~~~glgGv~iW~ 355 (355)
.|.|++..|+..+++.|++.|+ ||+||+
T Consensus 353 ivfyPTL~Sl~~Ri~lA~~~gv-gISIWe 380 (392)
T KOG2091|consen 353 IVFYPTLTSLELRIELARELGV-GISIWE 380 (392)
T ss_pred EEEecchHhHHHHHHHHHHhCC-ceEeee
Confidence 9999999999999999999998 999996
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.92 E-value=2.6e-24 Score=193.63 Aligned_cols=196 Identities=14% Similarity=0.074 Sum_probs=141.2
Q ss_pred CEEEEEEcCCCC------CCCCCCCCCCCcEEEEeeEEEeCCCcEEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEeCC
Q 040722 26 WIRVGYLNLSKV------STISGINYDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQG 99 (355)
Q Consensus 26 ~~vvgy~~~~~~------~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGg~ 99 (355)
++.+|||..|+. ..+.++| +.+++|++....++.++... . ..........++.++++ ++||+++|||+
T Consensus 1 ~~~~~y~~~~~~~~~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~--~-~~~~~~~~~~i~~l~~k--G~KVl~sigg~ 74 (255)
T cd06542 1 PISFGYFEVWDDKGASLQESLLNLP-DSVDMVSLFAANINLDAATA--V-QFLLTNKETYIRPLQAK--GTKVLLSILGN 74 (255)
T ss_pred CeEEEEEEecCCcCcccccccccCC-CcceEEEEcccccCcccccc--h-hhhhHHHHHHHHHHhhC--CCEEEEEECCC
Confidence 467899999875 4555665 67898888554444332110 0 11234455556666665 89999999998
Q ss_pred CCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC------CcccchHHHHHHHHHHHHhhHHHhhccC
Q 040722 100 MDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT------STDMFNVGLLFDEWRIAATKLEAKNSSR 173 (355)
Q Consensus 100 ~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~------~~~~~~~~~~l~~l~~~~l~~~~~~~g~ 173 (355)
.. ...+ ....+++.|++|++++++++++|||||||||||++.. +.+..+|..|+++||+ .+++
T Consensus 75 ~~--~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~-~~~~------- 143 (255)
T cd06542 75 HL--GAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRK-YMGP------- 143 (255)
T ss_pred CC--CCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHH-HhCc-------
Confidence 75 3344 3456788999999999999999999999999999875 2367899999999999 9953
Q ss_pred CCCcEEEEEEecCCCCCCccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCCCCC
Q 040722 174 QQSQLILTARFLYSPPANSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSA 253 (355)
Q Consensus 174 ~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~~~ 253 (355)
.+++|+++.++..... +.+++.+++||+++|+|+..+.-. . . .......|+|+
T Consensus 144 --~~kllt~~~~~~~~~~--~~~~~~~~vDyv~~~~y~~~~~~~--~-----------------~----~~~~~~~g~~~ 196 (255)
T cd06542 144 --TDKLLTIDGYGQALSN--DGEEVSPYVDYVIYQYYGSSSSST--Q-----------------R----NWNTNSPKIPP 196 (255)
T ss_pred --CCcEEEEEecCCchhc--CHHHHHHhCCEEEeeccCCCCccC--C-----------------c----ccccccCCCCH
Confidence 2489999987543322 678999999999999998543210 0 0 00111357999
Q ss_pred CceEEeeeccee
Q 040722 254 DKLVMGLPFYGY 265 (355)
Q Consensus 254 ~Kl~lglp~yG~ 265 (355)
+|+++|+++++.
T Consensus 197 ~k~i~~~~~~~~ 208 (255)
T cd06542 197 EKMVYTESFEEE 208 (255)
T ss_pred HHceeeeeeecc
Confidence 999999999864
No 22
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.90 E-value=2.8e-22 Score=180.60 Aligned_cols=201 Identities=15% Similarity=0.083 Sum_probs=134.7
Q ss_pred EEEEEcCCC--CCCCCCCCCCCCcEEEEeeEEEeCCCcEE--eeCC-CCC-----hhHHHHHHHHHHhhCCCcEEEEEEe
Q 040722 28 RVGYLNLSK--VSTISGINYDLFTHLICPSADINSTTYQL--SLSL-PSD-----DNQIAKFVDTVEKENPSITILLSIG 97 (355)
Q Consensus 28 vvgy~~~~~--~~~~~~~~~~~~thii~~~~~~~~~~~~~--~~~~-~~~-----~~~~~~~~~~lk~~~p~~kvllsiG 97 (355)
|+.||.... .-.-+.++...++-|+++|+..-+.++.. .+.+ ... -+.+..-++.++++ ++|||||||
T Consensus 3 v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~--G~KVlLSIG 80 (280)
T cd02877 3 IAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSK--GKKVLLSIG 80 (280)
T ss_pred eEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHC--CCEEEEEcc
Confidence 667886532 11222345567999999999877654332 3321 111 13456666666665 899999999
Q ss_pred CCCCCCCcchhhhhcChhhHHHHHHHHHHHHH------------HcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhh
Q 040722 98 QGMDTNYSIYSSMVRNSSHRKSFIDSSIRIAR------------LYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATK 165 (355)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~------------~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~ 165 (355)
|+.. +..+ .+++.|++|+++|.++.. +++|||||||||+|.. .+|..|+++||+ .++
T Consensus 81 G~~~--~~~~----~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~~~~~l~~~LR~-~~~ 149 (280)
T cd02877 81 GAGG--SYSL----SSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----ENYDALAKRLRS-LFA 149 (280)
T ss_pred CCCC--CcCC----CCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc----cCHHHHHHHHHH-Hhh
Confidence 9975 3223 788999999999987752 5679999999999874 689999999999 886
Q ss_pred HHHhhccCCCCcEEEEEEecCCCCCCccchhhhh-ccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHH
Q 040722 166 LEAKNSSRQQSQLILTARFLYSPPANSYLLNSIQ-RNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLK 244 (355)
Q Consensus 166 ~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~-~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~ 244 (355)
+.. ++++.||+|+++... ..+....+. .++|+++||.||..+-- ...+. ........+
T Consensus 150 ~~~------~~~~~LTaAPq~~~~-d~~~~~~i~~~~~D~i~vqfYn~~~c~--~~~~~------------~~~~~~~~~ 208 (280)
T cd02877 150 SDP------SKKYYLTAAPQCPYP-DASLGDAIATGLFDFIFVQFYNNPCCS--YASGN------------ASGFNFNWD 208 (280)
T ss_pred ccc------CCceEEEeccccCCc-chhHHHHHccCccCEEEEEEecCcccc--ccccc------------cchhhhHHH
Confidence 431 256999999776322 234344555 48999999999964320 00000 113334566
Q ss_pred HHHHCCCCC---CceEEeeecc
Q 040722 245 AWIERGLSA---DKLVMGLPFY 263 (355)
Q Consensus 245 ~~~~~g~~~---~Kl~lglp~y 263 (355)
.|... ++. .||+||||..
T Consensus 209 ~w~~~-~~~~~~~kv~lGlpas 229 (280)
T cd02877 209 TWTSW-AKATSNAKVFLGLPAS 229 (280)
T ss_pred HHHHh-cccCCCceEEEecccC
Confidence 67655 555 8999999874
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.87 E-value=4.2e-21 Score=174.23 Aligned_cols=149 Identities=11% Similarity=0.098 Sum_probs=114.0
Q ss_pred CCCCcEEEEeeEEEeCCCcEEeeCCC-C-C-hhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHH
Q 040722 45 YDLFTHLICPSADINSTTYQLSLSLP-S-D-DNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFI 121 (355)
Q Consensus 45 ~~~~thii~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi 121 (355)
...|+||+++|+....+ +++.+... . + ...+..-++.+|++ ++||++||||+.. .. +..+...|++|+
T Consensus 23 ~~g~~~v~lAFi~~~~~-~~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g--~~----~~~~~~~~~~~~ 93 (294)
T cd06543 23 ATGVKAFTLAFIVASGG-CKPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASG--TP----LATSCTSADQLA 93 (294)
T ss_pred HcCCCEEEEEEEEcCCC-CcccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCC--Cc----cccCcccHHHHH
Confidence 46799999999988754 36655411 1 1 33444455678887 6999999999975 21 333778999999
Q ss_pred HHHHHHHHHcCCCeEEEEeeCCCCCccc---chHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCC---ccch
Q 040722 122 DSSIRIARLYGFQGLDFAWTAPNTSTDM---FNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN---SYLL 195 (355)
Q Consensus 122 ~~l~~~l~~~~~DGididwe~~~~~~~~---~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~---~~~~ 195 (355)
+++.+++++|+|||||||||++.. .++ +++..+|++|++ ++. ++.||+++|..+.-. ++++
T Consensus 94 ~a~~~~i~~y~~dgiDfDiE~~~~-~d~~~~~~~~~al~~Lq~-~~p-----------~l~vs~Tlp~~p~gl~~~g~~~ 160 (294)
T cd06543 94 AAYQKVIDAYGLTHLDFDIEGGAL-TDTAAIDRRAQALALLQK-EYP-----------DLKISFTLPVLPTGLTPDGLNV 160 (294)
T ss_pred HHHHHHHHHhCCCeEEEeccCCcc-ccchhHHHHHHHHHHHHH-HCC-----------CcEEEEecCCCCCCCChhHHHH
Confidence 999999999999999999999875 554 677888888887 663 378999998665422 5667
Q ss_pred hhhhc----cccEEEeeecccCCC
Q 040722 196 NSIQR----NLNWVHAVTASYYEP 215 (355)
Q Consensus 196 ~~l~~----~vD~v~lm~yd~~~~ 215 (355)
.+.++ .+|+||||+|||++.
T Consensus 161 l~~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 161 LEAAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HHHHHHcCCCcceeeeeeecCCCC
Confidence 77777 899999999999864
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=5.2e-16 Score=132.03 Aligned_cols=177 Identities=14% Similarity=0.189 Sum_probs=117.2
Q ss_pred CCCCCCEEEEEEcCCCC-----C---CCCCCC----CCCCcEEEEeeEEEeCCCcEEeeCCCCChhHHHHHHHHHHhhCC
Q 040722 21 AKAKPWIRVGYLNLSKV-----S---TISGIN----YDLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENP 88 (355)
Q Consensus 21 ~~~~~~~vvgy~~~~~~-----~---~~~~~~----~~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p 88 (355)
...++++.||||++|.. | +..+|. ...++.+..+|..-..+=.+....++ .+..|+.-+.+|.++
T Consensus 21 ~~~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~g~iptf~P~~~-~daeFr~~v~aLnae-- 97 (332)
T COG3469 21 PDISNKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGAGDIPTFKPYND-PDAEFRAQVGALNAE-- 97 (332)
T ss_pred cccccceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecCCCCcccCcCCC-CHHHHHHHHHHhhcc--
Confidence 45567799999998542 1 111121 12355555555433321111111211 235577666666666
Q ss_pred CcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC--CcccchHHHHHHHHHHHHhhH
Q 040722 89 SITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT--STDMFNVGLLFDEWRIAATKL 166 (355)
Q Consensus 89 ~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~--~~~~~~~~~~l~~l~~~~l~~ 166 (355)
+.-|++|+||... .+--....-++|+.+|++++++|||||+|||.|+... .+...-..+.+|.+|+ ..+.
T Consensus 98 GkavllsLGGAdg-------hIeL~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~-hyk~ 169 (332)
T COG3469 98 GKAVLLSLGGADG-------HIELKAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKD-HYKN 169 (332)
T ss_pred CcEEEEEccCccc-------eEEeccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHH-HHHh
Confidence 7889999999754 1222334468999999999999999999999997653 1333367789999998 8876
Q ss_pred HHhhccCCCCcEEEEEEecCCCCCC--cc--chhhhhccccEEEeeecccCCC
Q 040722 167 EAKNSSRQQSQLILTARFLYSPPAN--SY--LLNSIQRNLNWVHAVTASYYEP 215 (355)
Q Consensus 167 ~~~~~g~~~~~~~ls~a~~~~~~~~--~~--~~~~l~~~vD~v~lm~yd~~~~ 215 (355)
. ++++.||++...+.-.. .| .+.++..+.||++.+-|+..|.
T Consensus 170 ~-------Gk~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGd 215 (332)
T COG3469 170 Q-------GKNFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGD 215 (332)
T ss_pred c-------CCceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCC
Confidence 5 78899999966443222 33 4788899999999999987654
No 25
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.39 E-value=7e-11 Score=106.38 Aligned_cols=227 Identities=16% Similarity=0.114 Sum_probs=141.7
Q ss_pred CchhHHHHHHHHHHHhccCC-CCCCCCEEEEEEcCCC----CCCCCCCCCCCCcEEEEeeEEEeCCCcEEeeCC-----C
Q 040722 1 MASIIISIIFHTLLYSELHP-AKAKPWIRVGYLNLSK----VSTISGINYDLFTHLICPSADINSTTYQLSLSL-----P 70 (355)
Q Consensus 1 M~~~~~~~l~~~~~~~~~~~-~~~~~~~vvgy~~~~~----~~~~~~~~~~~~thii~~~~~~~~~~~~~~~~~-----~ 70 (355)
|..+.++++|+.|+.+.+.. ..+.+.-+.+||.... .-....+....++.++++|+.--+.++++.+.. +
T Consensus 1 M~L~~~illF~~F~~l~lsk~~~~~~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd 80 (568)
T KOG4701|consen 1 MRLISSLLLFVYFARLALSKLNLTNQTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSD 80 (568)
T ss_pred CcHHHHHHHHHHHHHccccccccccccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCc
Confidence 66666666666655555443 4455667889997631 112233456678889999886444444544331 2
Q ss_pred CCh------hHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHc----------CCC
Q 040722 71 SDD------NQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLY----------GFQ 134 (355)
Q Consensus 71 ~~~------~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~----------~~D 134 (355)
.+. .++..-++..+.+ ++||||++||..+ ...+.+.+.-+.|++.+-+..-.- -+|
T Consensus 81 ~~~~~l~~CTqi~~di~~CQS~--GiKVlLSLGG~~G------nYs~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvD 152 (568)
T KOG4701|consen 81 SDTFSLKKCTQIETDIQVCQSN--GIKVLLSLGGYNG------NYSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVD 152 (568)
T ss_pred cccccccccchhhhHHHHHHhc--CeEEEEeccCccc------ceeeccchhHHHHHHHHHHHhcCCccccCcccchhcc
Confidence 211 2345555555555 9999999999875 234667777889999998765431 289
Q ss_pred eEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCCccchhhh-hccccEEEeeecccC
Q 040722 135 GLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLNSI-QRNLNWVHAVTASYY 213 (355)
Q Consensus 135 Gididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l-~~~vD~v~lm~yd~~ 213 (355)
|+|+|.|... ...|.+|-++||. .|..- ++++.|+.|..++.+.... -..| .+-.||+.++.|+-.
T Consensus 153 GfDF~IE~g~----~~~ysaLA~~L~~-~Fa~~-------~r~yYLsaAPQCP~PD~~~-G~aL~~~~fDf~~IQFYNN~ 219 (568)
T KOG4701|consen 153 GFDFEIEKGT----NTAYSALAKRLLE-IFASD-------PRRYYLSAAPQCPVPDHTL-GKALSENSFDFLSIQFYNNS 219 (568)
T ss_pred ceeeeeecCC----cchHHHHHHHHHH-HHccC-------CceEEeccCCCCCCCchhh-hhhhhccccceEEEEeecCC
Confidence 9999999443 3678999999999 88753 6789999998875443210 1122 345899999998631
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCCCCCCc---eEEeeecc
Q 040722 214 EPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADK---LVMGLPFY 263 (355)
Q Consensus 214 ~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~~~~K---l~lglp~y 263 (355)
. +..-.... ....+.-++ |... +.++| ++||||..
T Consensus 220 ~----------CS~SsG~~---Q~~fDsW~~-ya~~-~a~nKn~~lFLGLPg~ 257 (568)
T KOG4701|consen 220 T----------CSGSSGSR---QSTFDAWVE-YAED-SAYNKNTSLFLGLPGH 257 (568)
T ss_pred C----------cccccCcc---cccHHHHHH-HHhh-hcccccceEEeeccCC
Confidence 1 00000101 223443333 3332 66776 99999864
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.82 E-value=4.4e-08 Score=91.00 Aligned_cols=155 Identities=9% Similarity=0.054 Sum_probs=105.7
Q ss_pred HHHHHHhhCCCcEEEEEEeC-CCCCCCcchhhhhcC-hhhHHHHHHHHHHHHHHcCCCeEEEEeeCCC-CCcccchHHHH
Q 040722 79 FVDTVEKENPSITILLSIGQ-GMDTNYSIYSSMVRN-SSHRKSFIDSSIRIARLYGFQGLDFAWTAPN-TSTDMFNVGLL 155 (355)
Q Consensus 79 ~~~~lk~~~p~~kvllsiGg-~~~~~~~~~~~~~~~-~~~r~~fi~~l~~~l~~~~~DGididwe~~~-~~~~~~~~~~~ 155 (355)
.++.++++ ++||+-.|-= +.. ..+.+..++.+ ++.+..+|+.|+++++.|||||+.||+|... .+++.+++..|
T Consensus 51 ~idaAHkn--GV~Vlgti~~e~~~-~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F 127 (339)
T cd06547 51 WINAAHRN--GVPVLGTFIFEWTG-QVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAF 127 (339)
T ss_pred HHHHHHhc--CCeEEEEEEecCCC-chHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHH
Confidence 44555555 8999977741 221 24567889988 9999999999999999999999999999887 55888999999
Q ss_pred HHHHHHHHhhHHHhhccCCCCcEEEEEE----ecCCCC-CC---ccchhhhhccccEEEeeecccCCCCCCCCCCCCCcC
Q 040722 156 FDEWRIAATKLEAKNSSRQQSQLILTAR----FLYSPP-AN---SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAAL 227 (355)
Q Consensus 156 l~~l~~~~l~~~~~~~g~~~~~~~ls~a----~~~~~~-~~---~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl 227 (355)
+++|++ ++++. .+...+.-- ...... .. ..+.+-+ +.+|-+.+ -|. |..
T Consensus 128 ~~~L~~-~~~~~-------~~~~~v~WYDs~t~~G~l~wQn~Ln~~N~~ff-~~~D~~Fl-NY~----W~~--------- 184 (339)
T cd06547 128 LRYLKA-KLHEN-------VPGSLVIWYDSMTEDGKLSWQNELNSKNKPFF-DVCDGIFL-NYW----WTE--------- 184 (339)
T ss_pred HHHHHH-HHhhc-------CCCcEEEEEecCCCCCccchhhhhhHHHHHHH-hhhcceeE-ecC----CCc---------
Confidence 999999 99865 333343211 111111 11 1222222 55665422 232 321
Q ss_pred CCCCCCCCcccHHHHHHHHHHCCCCCCceEEeeecceeeee
Q 040722 228 YGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWT 268 (355)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~g~~~~Kl~lglp~yG~~~~ 268 (355)
...+.+++.....|..+.+|.+|+-..|+...
T Consensus 185 ---------~~l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 185 ---------ESLERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred ---------chHHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 24555566666788999999999999987764
No 27
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=98.12 E-value=9.9e-06 Score=74.54 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=93.7
Q ss_pred HHHHHHHhhCCCcEEEEEEe-CCCCCCCcchhhhhc-ChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCC-cccchHHH
Q 040722 78 KFVDTVEKENPSITILLSIG-QGMDTNYSIYSSMVR-NSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS-TDMFNVGL 154 (355)
Q Consensus 78 ~~~~~lk~~~p~~kvllsiG-g~~~~~~~~~~~~~~-~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~-~~~~~~~~ 154 (355)
.+++++++. ++|||-+|- .|.. ..+.+..++. +++....+++.|+++++.|||||.-|++|.+... ....++..
T Consensus 46 ~widaAHrn--GV~vLGTiife~~~-~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~ 122 (311)
T PF03644_consen 46 GWIDAAHRN--GVKVLGTIIFEWGG-GAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLID 122 (311)
T ss_dssp HHHHHHHHT--T--EEEEEEEEEE---HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHH
T ss_pred hhHHHHHhc--CceEEEEEEecCCc-hHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHH
Confidence 356656555 899985552 2222 2467888888 8899999999999999999999999999988764 57789999
Q ss_pred HHHHHHHHHhhHHHhhccCCCCcEEEEEEec--CCC---CCC---ccchhhhhccccEEEeeecccCCCCCCCCCCCCCc
Q 040722 155 LFDEWRIAATKLEAKNSSRQQSQLILTARFL--YSP---PAN---SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAA 226 (355)
Q Consensus 155 ~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~--~~~---~~~---~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~ap 226 (355)
|+++|++ +.++ . +...|.---. ..- +.. ..+ ....+.+|-+.+ -|. |.
T Consensus 123 F~~~l~~-~~~~-~-------~~~~v~WYDs~t~~G~l~~qn~Ln~~N-~~f~~~~d~iFl-NY~----W~--------- 178 (311)
T PF03644_consen 123 FLKYLRK-EAHE-N-------PGSEVIWYDSVTNSGRLSWQNELNDKN-KPFFDVCDGIFL-NYN----WN--------- 178 (311)
T ss_dssp HHHHHHH-HHHH-T--------T-EEEEES-B-SSSSB---SSS-TTT-GGGBES-SEEEE--S------S---------
T ss_pred HHHHHHH-Hhhc-C-------CCcEEEEeecCCcCCccchHHHHHhhC-cchhhhcceeeE-ecC----CC---------
Confidence 9999999 8875 1 1123322211 110 111 111 111345665533 221 31
Q ss_pred CCCCCCCCCcccHHHHHHHHHHCCCCCCceEEeeecceee
Q 040722 227 LYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYA 266 (355)
Q Consensus 227 l~~~~~~~~~~~~~~~v~~~~~~g~~~~Kl~lglp~yG~~ 266 (355)
...++.+++...+.+.+|.+|.+|+-..|+.
T Consensus 179 ---------~~~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 179 ---------PDSLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp ---------HHHHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred ---------cccHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 2367888888888999999999999999988
No 28
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.10 E-value=3.4e-05 Score=71.21 Aligned_cols=126 Identities=14% Similarity=0.162 Sum_probs=88.0
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEE-eeCCC-----------------------CCcc-------cchHHHHHHHHHH
Q 040722 113 NSSHRKSFIDSSIRIARLYGFQGLDFA-WTAPN-----------------------TSTD-------MFNVGLLFDEWRI 161 (355)
Q Consensus 113 ~~~~r~~fi~~l~~~l~~~~~DGidid-we~~~-----------------------~~~~-------~~~~~~~l~~l~~ 161 (355)
.|+.|+-.++-+.+++++|.+|||+|| .-+|. .+.| +++...|++++++
T Consensus 135 ~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~ 214 (311)
T PF02638_consen 135 HPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYD 214 (311)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 567788888888889999999999999 34432 1233 4577899999999
Q ss_pred HHhhHHHhhccCCCCcEEEEEEecCCCCC--C--ccchhhh--hccccEEEeeeccc-CCCCCCCCCCCCCcCCCCCCCC
Q 040722 162 AATKLEAKNSSRQQSQLILTARFLYSPPA--N--SYLLNSI--QRNLNWVHAVTASY-YEPVSTNFTAPPAALYGSSSGG 234 (355)
Q Consensus 162 ~~l~~~~~~~g~~~~~~~ls~a~~~~~~~--~--~~~~~~l--~~~vD~v~lm~yd~-~~~~~~~~~~~~apl~~~~~~~ 234 (355)
++++. ++...+++++-+.... . --|.... ..++|++..|.|-. .+. .
T Consensus 215 -~ik~~-------kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~~~~-------~----------- 268 (311)
T PF02638_consen 215 -AIKAI-------KPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSDFSH-------F----------- 268 (311)
T ss_pred -HHHHh-------CCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccccch-------h-----------
Confidence 99987 6778888876533311 1 2243333 36899999999943 111 0
Q ss_pred CcccHHHHHHHHHHCCCCC-CceEEeeeccee
Q 040722 235 FARSTDQVLKAWIERGLSA-DKLVMGLPFYGY 265 (355)
Q Consensus 235 ~~~~~~~~v~~~~~~g~~~-~Kl~lglp~yG~ 265 (355)
....+..+..|.+.-.+. -+|.+|+.+|-.
T Consensus 269 -~~~~~~~~~~w~~~~~~~~v~ly~G~~~y~~ 299 (311)
T PF02638_consen 269 -TAPYEQLAKWWAKQVKPTNVHLYIGLALYKV 299 (311)
T ss_pred -HHHHHHHHHHHHHhhcCCCceEEEccCcCCC
Confidence 236677777787654443 499999988753
No 29
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.78 E-value=0.00041 Score=57.73 Aligned_cols=115 Identities=12% Similarity=0.068 Sum_probs=75.5
Q ss_pred ChhhHHHHHHHHHHHHHH-cCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCC
Q 040722 113 NSSHRKSFIDSSIRIARL-YGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN 191 (355)
Q Consensus 113 ~~~~r~~fi~~l~~~l~~-~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~ 191 (355)
+++..++..+.+.++-.. +...||.|||..+. .....|..|+++||. .+. .++.||++.=+ .+..
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t--~~L~~Y~~fL~~LR~-~LP----------~~~~LSIT~L~-dW~~ 87 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAAT--SRLPAYAQFLQQLRQ-RLP----------PDYRLSITALP-DWLS 87 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCccc--cchHHHHHHHHHHHH-hCC----------CCceEeeEEeh-hhhc
Confidence 344455555555555533 35799999999665 467799999999999 995 34777776542 2333
Q ss_pred ccc-hhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCCCCCCceEEeeecce
Q 040722 192 SYL-LNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYG 264 (355)
Q Consensus 192 ~~~-~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~~~~Kl~lglp~yG 264 (355)
.-+ +..+...||-+++|+|. |. +.. .....-+..+... . --.-+|+|.||
T Consensus 88 ~~~~L~~L~~~VDE~VlQ~yq--Gl-------~d~-----------~~~~~yl~~l~~l--~-~PFriaLp~yG 138 (181)
T PF11340_consen 88 SPDWLNALPGVVDELVLQVYQ--GL-------FDP-----------PNYARYLPRLARL--T-LPFRIALPQYG 138 (181)
T ss_pred CchhhhhHhhcCCeeEEEeec--CC-------CCH-----------HHHHHHHHHHhcC--C-CCeEEecCcCC
Confidence 233 78899999999999992 21 011 1333333444333 2 56789999999
No 30
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.60 E-value=0.027 Score=51.81 Aligned_cols=166 Identities=10% Similarity=0.078 Sum_probs=102.8
Q ss_pred CCCCcEEEEeeEEEeCCCcEEeeCCCC-----------ChhHHHHHHHHHHhhCCCcEEEEEEeCCCCC-----------
Q 040722 45 YDLFTHLICPSADINSTTYQLSLSLPS-----------DDNQIAKFVDTVEKENPSITILLSIGQGMDT----------- 102 (355)
Q Consensus 45 ~~~~thii~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~----------- 102 (355)
-..++-+| +.+..+.|.+....+. .......+++.+|++ ++.++.-|-...+.
T Consensus 24 ~t~lNavV---IDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~--gIY~IARIv~FkD~~la~~~pe~av 98 (316)
T PF13200_consen 24 RTELNAVV---IDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEH--GIYPIARIVVFKDPVLAEAHPEWAV 98 (316)
T ss_pred hcCCceEE---EEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHC--CCEEEEEEEEecChHHhhhChhhEE
Confidence 34455555 4577777777764211 113467788888887 66666444322110
Q ss_pred ---CCcchh----hhhcCh--hhHHHHHHHHHHHHHHcCCCeEEEEe-eCCCC----------Cc----ccchHHHHHHH
Q 040722 103 ---NYSIYS----SMVRNS--SHRKSFIDSSIRIARLYGFQGLDFAW-TAPNT----------ST----DMFNVGLLFDE 158 (355)
Q Consensus 103 ---~~~~~~----~~~~~~--~~r~~fi~~l~~~l~~~~~DGididw-e~~~~----------~~----~~~~~~~~l~~ 158 (355)
+...|. ....|| .......-.|..-+.+.|||.|.||. .+|.. .. -......||+.
T Consensus 99 ~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~ 178 (316)
T PF13200_consen 99 KTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAY 178 (316)
T ss_pred ECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHH
Confidence 001111 112233 22334555688888899999999997 57761 11 12567899999
Q ss_pred HHHHHhhHHHhhccCCCCcEEEEEEecCCCCCC------ccchhhhhccccEEEeeecccCCCCCCCCCCCCCcC
Q 040722 159 WRIAATKLEAKNSSRQQSQLILTARFLYSPPAN------SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAAL 227 (355)
Q Consensus 159 l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~------~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl 227 (355)
.|+ ++++. +..||+.+-+..... +-++..++++||+|.-|-|-=| |..+..+...|-
T Consensus 179 a~~-~l~~~---------~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh--~~~g~~g~~~P~ 241 (316)
T PF13200_consen 179 ARE-ELHPY---------GVPVSADVFGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSH--YGPGFFGIDKPD 241 (316)
T ss_pred HHH-HHhHc---------CCCEEEEecccccccCCCCCcCCCHHHHhhhCCEEEecccccc--cCcccCCCCCcc
Confidence 999 99754 367888887543221 6789999999999999999533 555444544443
No 31
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=96.57 E-value=0.038 Score=51.75 Aligned_cols=83 Identities=11% Similarity=0.180 Sum_probs=70.1
Q ss_pred HHHHhhCCCcEEEEE-EeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHH
Q 040722 81 DTVEKENPSITILLS-IGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEW 159 (355)
Q Consensus 81 ~~lk~~~p~~kvlls-iGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l 159 (355)
+.++++ +++|+-+ |..|.. +.+....+++++++.+..++.++++.+-.||||=-|+.|.........++..|++.|
T Consensus 118 n~AHrH--GV~vlGTFItEw~e-g~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~L 194 (526)
T KOG2331|consen 118 NTAHRH--GVKVLGTFITEWDE-GKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHL 194 (526)
T ss_pred chhhhc--CceeeeeEEEEecc-chhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHH
Confidence 334554 8999866 466765 567889999999999999999999999999999999999877657778999999999
Q ss_pred HHHHhhHH
Q 040722 160 RIAATKLE 167 (355)
Q Consensus 160 ~~~~l~~~ 167 (355)
.+ ++++.
T Consensus 195 t~-~~~~~ 201 (526)
T KOG2331|consen 195 TK-VLHSS 201 (526)
T ss_pred HH-HHhhc
Confidence 99 98864
No 32
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=92.93 E-value=5.9 Score=35.84 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=109.9
Q ss_pred CCcEEEE-eeEEEeCCCc--EEeeCCCCC---hhHHHHHHHHHHhhCCCcEEEEEEe--CCCCCC-------------Cc
Q 040722 47 LFTHLIC-PSADINSTTY--QLSLSLPSD---DNQIAKFVDTVEKENPSITILLSIG--QGMDTN-------------YS 105 (355)
Q Consensus 47 ~~thii~-~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~lk~~~p~~kvllsiG--g~~~~~-------------~~ 105 (355)
..++|++ +|...+.+|. .+.+++... ...|.+..=.++.+. ++||...+. .+...+ ..
T Consensus 30 ~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~-~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~~ 108 (294)
T PF14883_consen 30 GINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRA-GVKVYAWMPVLAFDLPKVKRADEVRTDRPDPD 108 (294)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhh-CCEEEEeeehhhccCCCcchhhhccccCCCCC
Confidence 4677777 5555555552 244553332 233444432455554 788875543 221100 01
Q ss_pred chhhhh-cChhhHHHHHHHHHHHHHHc-CCCeEEEEeeCCCCC-------------cccchHHHHHHHHHHHHhhHHHhh
Q 040722 106 IYSSMV-RNSSHRKSFIDSSIRIARLY-GFQGLDFAWTAPNTS-------------TDMFNVGLLFDEWRIAATKLEAKN 170 (355)
Q Consensus 106 ~~~~~~-~~~~~r~~fi~~l~~~l~~~-~~DGididwe~~~~~-------------~~~~~~~~~l~~l~~~~l~~~~~~ 170 (355)
...++- =+++.| +.|.+|-+=|..| .||||-|+=+...++ .....+..|-.+|++ ..+..
T Consensus 109 ~y~RLSPf~p~~r-~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~-~v~~~--- 183 (294)
T PF14883_consen 109 GYRRLSPFDPEAR-QIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAA-AVRRY--- 183 (294)
T ss_pred CceecCCCCHHHH-HHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHH-HHHHh---
Confidence 111111 134443 5688888888888 899999854322221 112467889999998 88765
Q ss_pred ccCCCCcEEEEEEecCC----CCCC---ccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHH
Q 040722 171 SSRQQSQLILTARFLYS----PPAN---SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVL 243 (355)
Q Consensus 171 ~g~~~~~~~ls~a~~~~----~~~~---~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v 243 (355)
.+.+...--+.+. +... .-++....+.-||..+|+.-+... .. .| ..++.+.+
T Consensus 184 ----rp~lkTARNiya~pvl~P~se~WfAQnl~~fl~~YD~taimAMPymE~----~~---~~---------~~WL~~Lv 243 (294)
T PF14883_consen 184 ----RPDLKTARNIYAEPVLNPESEAWFAQNLDDFLKAYDYTAIMAMPYMEQ----AE---DP---------EQWLAQLV 243 (294)
T ss_pred ----CccchhhhcccccccCCcchhhHHHHhHHHHHHhCCeeheeccchhcc----cc---CH---------HHHHHHHH
Confidence 2222222222221 1111 446777777889999988765432 11 11 45888888
Q ss_pred HHHHHCCCCCCceEEeeecceeeee
Q 040722 244 KAWIERGLSADKLVMGLPFYGYAWT 268 (355)
Q Consensus 244 ~~~~~~g~~~~Kl~lglp~yG~~~~ 268 (355)
+.........+|+++-|.. ++|+
T Consensus 244 ~~v~~~p~~l~KtvFELQa--~dwr 266 (294)
T PF14883_consen 244 DAVAARPGGLDKTVFELQA--VDWR 266 (294)
T ss_pred HHHHhcCCcccceEEEEec--cCCc
Confidence 8887776678999999976 5564
No 33
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=92.63 E-value=1.1 Score=47.21 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEe-------CCCCC---C---Ccchh----------------hhhcChhhHHHHHHHH
Q 040722 74 NQIAKFVDTVEKENPSITILLSIG-------QGMDT---N---YSIYS----------------SMVRNSSHRKSFIDSS 124 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiG-------g~~~~---~---~~~~~----------------~~~~~~~~r~~fi~~l 124 (355)
..|+.|++.++++ +++|++-+- |.... + +..|. ....++.-|+-+++++
T Consensus 404 ~Efk~mV~alH~~--Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 404 KEFREMVQALNKT--GLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 3688899988887 899998772 21110 0 00010 1123577788899999
Q ss_pred HHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHH
Q 040722 125 IRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 125 ~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
.-|+++|++||+-||.-.-.. ..|++++++ ++++.
T Consensus 482 ~~W~~ey~VDGFRfDlm~~~~-------~~f~~~~~~-~l~~i 516 (898)
T TIGR02103 482 VVWAKDYKVDGFRFDLMGHHP-------KAQMLAARE-AIKAL 516 (898)
T ss_pred HHHHHHcCCCEEEEechhhCC-------HHHHHHHHH-HHHHh
Confidence 999999999999999753322 557888888 77765
No 34
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=91.97 E-value=1.9 Score=43.94 Aligned_cols=84 Identities=14% Similarity=0.255 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEeCCCCC---C-------Ccch------------h-----hhhcChhhHHHHHHHHHH
Q 040722 74 NQIAKFVDTVEKENPSITILLSIGQGMDT---N-------YSIY------------S-----SMVRNSSHRKSFIDSSIR 126 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiGg~~~~---~-------~~~~------------~-----~~~~~~~~r~~fi~~l~~ 126 (355)
..++.|+++++++ +++|++-+--.... . +..| . --..++.-|+-+++++.-
T Consensus 229 ~efk~lV~~~H~~--Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~ 306 (605)
T TIGR02104 229 RELKQMIQALHEN--GIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLY 306 (605)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHH
Confidence 5799999988888 89999886321100 0 0000 0 012367788889999999
Q ss_pred HHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHH
Q 040722 127 IARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 127 ~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
|+++|++||+-+|--.... ..|++++++ ++++.
T Consensus 307 W~~e~~iDGfR~D~~~~~~-------~~~~~~~~~-~~~~~ 339 (605)
T TIGR02104 307 WVKEYNIDGFRFDLMGIHD-------IETMNEIRK-ALNKI 339 (605)
T ss_pred HHHHcCCCEEEEechhcCC-------HHHHHHHHH-HHHhh
Confidence 9999999999999642211 357888888 88765
No 35
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=91.22 E-value=2.8 Score=38.21 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCc------
Q 040722 74 NQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTST------ 147 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~------ 147 (355)
..+.+.+...++..++..++++|+|.. + +.++ .+++.+.++|+|+|+|++--|....
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~~-------------~---~~~~-~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~ 145 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGSS-------------K---EDYV-ELARKIERAGAKALELNLSCPNVGGGRQLGQ 145 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccCC-------------H---HHHH-HHHHHHHHhCCCEEEEEcCCCCCCCCccccc
Confidence 334444433443335789999999852 1 2333 3455566679999999998775422
Q ss_pred ccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCC-ccc-hhhhhc-cccEEEee
Q 040722 148 DMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN-SYL-LNSIQR-NLNWVHAV 208 (355)
Q Consensus 148 ~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~-~~~l~~-~vD~v~lm 208 (355)
+.....++++++|+ .++ +.+++-+.+..... ..+ .+.+.+ -+|++.+.
T Consensus 146 ~~~~~~eiv~~vr~-~~~------------~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 146 DPEAVANLLKAVKA-AVD------------IPLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CHHHHHHHHHHHHH-ccC------------CCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 22334556666666 441 45666665432211 111 122222 38999875
No 36
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=91.17 E-value=8.2 Score=36.24 Aligned_cols=146 Identities=13% Similarity=0.156 Sum_probs=74.8
Q ss_pred cEEEEeeEEEeCCCc----EEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEe--CCCCCCCc--c-----hh-------
Q 040722 49 THLICPSADINSTTY----QLSLSLPSDDNQIAKFVDTVEKENPSITILLSIG--QGMDTNYS--I-----YS------- 108 (355)
Q Consensus 49 thii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiG--g~~~~~~~--~-----~~------- 108 (355)
--||...+.+++.+. .+.+..+..-+.++++++.+|+. +.|+++-|. |... ... . -+
T Consensus 48 GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--g~~~~~Ql~H~G~~~-~~~~~~~~~~~ps~~~~~~~ 124 (343)
T cd04734 48 GLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAH--GAVIMIQLTHLGRRG-DGDGSWLPPLAPSAVPEPRH 124 (343)
T ss_pred CEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhc--CCeEEEeccCCCcCc-CcccCCCcccCCCCCCCCCC
Confidence 335556666665531 22222233345788888888886 778887763 3211 100 0 00
Q ss_pred ----hhhcC---hhhHHHHHHHHHHHHHHcCCCeEEEEee--C-------CCC--Ccc--------c-chHHHHHHHHHH
Q 040722 109 ----SMVRN---SSHRKSFIDSSIRIARLYGFQGLDFAWT--A-------PNT--STD--------M-FNVGLLFDEWRI 161 (355)
Q Consensus 109 ----~~~~~---~~~r~~fi~~l~~~l~~~~~DGididwe--~-------~~~--~~~--------~-~~~~~~l~~l~~ 161 (355)
+-++. .+-.+.|++... .+++-|||||+|+.- | |.. ..| + ......++.+|+
T Consensus 125 ~~~~~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~ 203 (343)
T cd04734 125 RAVPKAMEEEDIEEIIAAFADAAR-RCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRA 203 (343)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHH
Confidence 01110 233455665554 445579999999983 2 211 111 1 223345555555
Q ss_pred HHhhHHHhhccCCCCcEEEEEEecCCCCCC-ccc-------hhhhhcc--ccEEEeee
Q 040722 162 AATKLEAKNSSRQQSQLILTARFLYSPPAN-SYL-------LNSIQRN--LNWVHAVT 209 (355)
Q Consensus 162 ~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~-------~~~l~~~--vD~v~lm~ 209 (355)
++ +.++.+.+.+.+..... +.+ .+.|.+. +|++.|..
T Consensus 204 -~v----------g~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~ 250 (343)
T cd04734 204 -AV----------GPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSA 250 (343)
T ss_pred -Hc----------CCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 54 34577888877543322 222 2344443 79998854
No 37
>PRK12313 glycogen branching enzyme; Provisional
Probab=91.14 E-value=2.3 Score=43.54 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCCC---------C-Cc-------------chh---hhhcChhhHHHHHHHHH
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMDT---------N-YS-------------IYS---SMVRNSSHRKSFIDSSI 125 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~---------~-~~-------------~~~---~~~~~~~~r~~fi~~l~ 125 (355)
....++.|+++++++ +++|++-+--.... + +. .|. --..+++.|+-+++++.
T Consensus 218 t~~d~k~lv~~~H~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~ 295 (633)
T PRK12313 218 TPEDFMYLVDALHQN--GIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSAL 295 (633)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 466799999988888 89999886321100 0 00 010 01246888999999999
Q ss_pred HHHHHcCCCeEEEEee-CC------------C--C-CcccchHHHHHHHHHHHHhhHH
Q 040722 126 RIARLYGFQGLDFAWT-AP------------N--T-STDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 126 ~~l~~~~~DGididwe-~~------------~--~-~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
-|+++|++||+-+|-- .. . . ......=..|++++++ .+++.
T Consensus 296 ~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~-~v~~~ 352 (633)
T PRK12313 296 FWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNE-VVYLE 352 (633)
T ss_pred HHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHH-HHHHH
Confidence 9999999999999921 00 0 0 0000122679999999 88876
No 38
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=91.09 E-value=2 Score=43.02 Aligned_cols=90 Identities=13% Similarity=0.197 Sum_probs=60.1
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCCC-CC-------cchh----------hhhcCh---hhHHHHHHHHHHHHHH
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMDT-NY-------SIYS----------SMVRNS---SHRKSFIDSSIRIARL 130 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~-~~-------~~~~----------~~~~~~---~~r~~fi~~l~~~l~~ 130 (355)
....++.|+++++++ +++|++-+--.... +. ..|. --..++ .-|+-+++++.-|+++
T Consensus 158 ~~~e~k~lV~~aH~~--Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e 235 (542)
T TIGR02402 158 GPDDLKALVDAAHGL--GLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLRE 235 (542)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 456799999988888 89999886321100 00 0010 012345 7888899999999999
Q ss_pred cCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHH
Q 040722 131 YGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 131 ~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
|++||+-+|--.... + ..-..|++++++ .+++.
T Consensus 236 ~~iDGfR~D~~~~~~--~-~~~~~~l~~~~~-~~~~~ 268 (542)
T TIGR02402 236 YHFDGLRLDAVHAIA--D-TSAKHILEELAR-EVHEL 268 (542)
T ss_pred hCCcEEEEeCHHHhc--c-ccHHHHHHHHHH-HHHHH
Confidence 999999999531111 1 112579999999 88765
No 39
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.65 E-value=5.4 Score=37.39 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=38.9
Q ss_pred CCChhHHHHHHHHHHhhCCCcEEEEEE--eCCCCCCCc----c-----------------hhhhhcC---hhhHHHHHHH
Q 040722 70 PSDDNQIAKFVDTVEKENPSITILLSI--GQGMDTNYS----I-----------------YSSMVRN---SSHRKSFIDS 123 (355)
Q Consensus 70 ~~~~~~~~~~~~~lk~~~p~~kvllsi--Gg~~~~~~~----~-----------------~~~~~~~---~~~r~~fi~~ 123 (355)
+..-+.++++++.+|+. +.|+++-| +|... ... . ..+.++. .+..+.|++.
T Consensus 78 d~~i~~~~~l~~~vh~~--G~~~~~Ql~h~G~~~-~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~a 154 (338)
T cd04733 78 GEDLEAFREWAAAAKAN--GALIWAQLNHPGRQS-PAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHA 154 (338)
T ss_pred HHHHHHHHHHHHHHHhc--CCEEEEEccCCCcCC-CccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHH
Confidence 33456788888888887 78888765 23221 100 0 0011111 1234455554
Q ss_pred HHHHHHHcCCCeEEEEeeC
Q 040722 124 SIRIARLYGFQGLDFAWTA 142 (355)
Q Consensus 124 l~~~l~~~~~DGididwe~ 142 (355)
. +.+++.|||||+|+--+
T Consensus 155 A-~ra~~aGfDgVeih~a~ 172 (338)
T cd04733 155 A-RLAQEAGFDGVQIHAAH 172 (338)
T ss_pred H-HHHHHcCCCEEEEchhh
Confidence 4 35677899999998764
No 40
>PRK12568 glycogen branching enzyme; Provisional
Probab=90.28 E-value=3.9 Score=42.23 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=62.9
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCCC---------C-Cc-------------chhh---hhcChhhHHHHHHHHH
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMDT---------N-YS-------------IYSS---MVRNSSHRKSFIDSSI 125 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~---------~-~~-------------~~~~---~~~~~~~r~~fi~~l~ 125 (355)
....++.|++.++++ +++|++-+--.... + .. .|.. -..+++-|+-+++++.
T Consensus 317 ~~~dfk~lV~~~H~~--Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~ 394 (730)
T PRK12568 317 SPDGFAQFVDACHRA--GIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSAL 394 (730)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHH
Confidence 567899999988888 89999886321100 0 00 1111 2456788999999999
Q ss_pred HHHHHcCCCeEEEEe--------------eCCCC-CcccchH--HHHHHHHHHHHhhHH
Q 040722 126 RIARLYGFQGLDFAW--------------TAPNT-STDMFNV--GLLFDEWRIAATKLE 167 (355)
Q Consensus 126 ~~l~~~~~DGididw--------------e~~~~-~~~~~~~--~~~l~~l~~~~l~~~ 167 (355)
-|+++|++||+-+|= |+... ...+.|+ ..|+++|++ .++..
T Consensus 395 ~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~-~v~~~ 452 (730)
T PRK12568 395 EWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNR-EIASQ 452 (730)
T ss_pred HHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHH-HHHHH
Confidence 999999999999992 11111 1112233 579999999 99876
No 41
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=89.86 E-value=4.3 Score=41.37 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=61.3
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCCC-C--------C-c-------------chhh---hhcChhhHHHHHHHHH
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMDT-N--------Y-S-------------IYSS---MVRNSSHRKSFIDSSI 125 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~-~--------~-~-------------~~~~---~~~~~~~r~~fi~~l~ 125 (355)
....++.|+++++++ +++|++-+--.... + . . .|.. -..+++-|+-+++++.
T Consensus 204 t~~dlk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~ 281 (613)
T TIGR01515 204 TPDDFMYFVDACHQA--GIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANAL 281 (613)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHH
Confidence 456799999988888 89999886321100 0 0 0 0110 1246888999999999
Q ss_pred HHHHHcCCCeEEEEee-CCC-------------CC-c--ccchHHHHHHHHHHHHhhHH
Q 040722 126 RIARLYGFQGLDFAWT-APN-------------TS-T--DMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 126 ~~l~~~~~DGididwe-~~~-------------~~-~--~~~~~~~~l~~l~~~~l~~~ 167 (355)
-|+++|++||+-+|-- ... .. . ....=..|++++++ .+++.
T Consensus 282 ~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~-~v~~~ 339 (613)
T TIGR01515 282 YWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQ-TVYEA 339 (613)
T ss_pred HHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHH-HHHHH
Confidence 9999999999999952 110 00 0 01112579999999 88875
No 42
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.45 E-value=0.87 Score=43.51 Aligned_cols=90 Identities=12% Similarity=0.081 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCCeEEEEee--CCCC---------------------Ccc------cchHHHHHHHHHHHHh
Q 040722 114 SSHRKSFIDSSIRIARLYGFQGLDFAWT--APNT---------------------STD------MFNVGLLFDEWRIAAT 164 (355)
Q Consensus 114 ~~~r~~fi~~l~~~l~~~~~DGididwe--~~~~---------------------~~~------~~~~~~~l~~l~~~~l 164 (355)
|+.|+-..+-+++.++.|..|||.+|-- +|.. ..+ +++...|++++.. .+
T Consensus 181 Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~-~V 259 (418)
T COG1649 181 PEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQ-TV 259 (418)
T ss_pred hHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHH-HH
Confidence 4556666667788999999999999832 2210 111 2467899999999 99
Q ss_pred hHHHhhccCCCCcEEEEEEe-cCCCC-CCcc-----chhhh--hccccEEEeeecc
Q 040722 165 KLEAKNSSRQQSQLILTARF-LYSPP-ANSY-----LLNSI--QRNLNWVHAVTAS 211 (355)
Q Consensus 165 ~~~~~~~g~~~~~~~ls~a~-~~~~~-~~~~-----~~~~l--~~~vD~v~lm~yd 211 (355)
++. +++..++++. ++... ...| |.... ..++|++.+|.|-
T Consensus 260 Kav-------Kp~v~~svsp~n~~~~~~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr 308 (418)
T COG1649 260 KAV-------KPNVKFSVSPFNPLGSATFAYDYFLQDWRRWVRQGLIDELAPQVYR 308 (418)
T ss_pred Hhh-------CCCeEEEEccCCCCCccceehhhhhhhHHHHHHcccHhhhhhhhhc
Confidence 887 7788899887 42111 0122 22111 4689999999993
No 43
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=88.94 E-value=8.2 Score=36.41 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=73.8
Q ss_pred CcEEEEeeEEEeCCCc----EEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEe--CCCCCCC------cc--------h
Q 040722 48 FTHLICPSADINSTTY----QLSLSLPSDDNQIAKFVDTVEKENPSITILLSIG--QGMDTNY------SI--------Y 107 (355)
Q Consensus 48 ~thii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiG--g~~~~~~------~~--------~ 107 (355)
.--||.....+++++. .+.+..+..-+.++++++.+++. +.|+++-+. |... .. +. .
T Consensus 47 ~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~--g~~~~~QL~h~G~~~-~~~~~~~ps~~~~~~~~~~ 123 (353)
T cd02930 47 VGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAE--GGKIALQILHAGRYA-YHPLCVAPSAIRAPINPFT 123 (353)
T ss_pred ceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHc--CCEEEeeccCCCCCC-CCCCCcCCCCCCCCCCCCC
Confidence 3345555555655431 12222233345677777777776 788888772 2211 10 00 0
Q ss_pred hhhhcC---hhhHHHHHHHHHHHHHHcCCCeEEEEeeC---------CCC--Ccc--------c-chHHHHHHHHHHHHh
Q 040722 108 SSMVRN---SSHRKSFIDSSIRIARLYGFQGLDFAWTA---------PNT--STD--------M-FNVGLLFDEWRIAAT 164 (355)
Q Consensus 108 ~~~~~~---~~~r~~fi~~l~~~l~~~~~DGididwe~---------~~~--~~~--------~-~~~~~~l~~l~~~~l 164 (355)
.+.++. .+..+.|++.... +++-|||||+|..-+ |.. ..| + ......++++|+ ++
T Consensus 124 p~~mt~~eI~~i~~~f~~aA~~-a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~-~v 201 (353)
T cd02930 124 PRELSEEEIEQTIEDFARCAAL-AREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRA-AV 201 (353)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH-HHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHH-Hc
Confidence 111211 1233455555443 455699999998632 211 111 1 223356666666 66
Q ss_pred hHHHhhccCCCCcEEEEEEecCCCCCC-ccc-------hhhhhcc-ccEEEeee
Q 040722 165 KLEAKNSSRQQSQLILTARFLYSPPAN-SYL-------LNSIQRN-LNWVHAVT 209 (355)
Q Consensus 165 ~~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~-------~~~l~~~-vD~v~lm~ 209 (355)
++++.|.+.+.+..... +++ .+.|.++ +|+++|..
T Consensus 202 ----------G~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~ 245 (353)
T cd02930 202 ----------GEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGI 245 (353)
T ss_pred ----------CCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 44577777776543221 222 2334443 89998843
No 44
>PRK05402 glycogen branching enzyme; Provisional
Probab=88.57 E-value=5.9 Score=41.30 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=62.0
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCC-CC---------C-------------cchh---hhhcChhhHHHHHHHHH
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMD-TN---------Y-------------SIYS---SMVRNSSHRKSFIDSSI 125 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~-~~---------~-------------~~~~---~~~~~~~~r~~fi~~l~ 125 (355)
....++.|+++++++ +++|++-+--... .+ + ..|. --..+++-|+-+++++.
T Consensus 313 t~~dfk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~ 390 (726)
T PRK05402 313 TPDDFRYFVDACHQA--GIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANAL 390 (726)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHH
Confidence 466799999988888 8999988621100 00 0 0011 13457788899999999
Q ss_pred HHHHHcCCCeEEEEe-eCC--------------CC--CcccchHHHHHHHHHHHHhhHH
Q 040722 126 RIARLYGFQGLDFAW-TAP--------------NT--STDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 126 ~~l~~~~~DGididw-e~~--------------~~--~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
-|++++++||+-+|- ... .. ..+...-..|++++++ .++..
T Consensus 391 ~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~-~~~~~ 448 (726)
T PRK05402 391 YWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNA-VVHEE 448 (726)
T ss_pred HHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHH-HHHHH
Confidence 999999999999993 111 00 0111124679999999 88875
No 45
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=88.20 E-value=4.7 Score=43.69 Aligned_cols=84 Identities=12% Similarity=0.207 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEeCCCCC--------CCcchh----------------hhhcChhhHHHHHHHHHHHHH
Q 040722 74 NQIAKFVDTVEKENPSITILLSIGQGMDT--------NYSIYS----------------SMVRNSSHRKSFIDSSIRIAR 129 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiGg~~~~--------~~~~~~----------------~~~~~~~~r~~fi~~l~~~l~ 129 (355)
..|+.|+++++++ +++|++-|--.... .+.-+. .-..++..|+-+++++.-|++
T Consensus 555 ~EfK~LV~alH~~--GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 555 AEFKNLINEIHKR--GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHC--CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5699999988888 89999886321100 000000 012346778889999999999
Q ss_pred HcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHH
Q 040722 130 LYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 130 ~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
+|++||+-||.-.. -+ ..++++++. ++++.
T Consensus 633 ey~VDGFRfDl~g~---~d----~~~~~~~~~-~l~~~ 662 (1111)
T TIGR02102 633 EFKVDGFRFDMMGD---HD----AASIEIAYK-EAKAI 662 (1111)
T ss_pred hcCCcEEEEecccc---CC----HHHHHHHHH-HHHHh
Confidence 99999999997521 12 235566666 55543
No 46
>PRK14706 glycogen branching enzyme; Provisional
Probab=87.64 E-value=8.4 Score=39.44 Aligned_cols=93 Identities=10% Similarity=0.031 Sum_probs=61.5
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCC---------CC-Cc-------------chhh---hhcChhhHHHHHHHHH
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMD---------TN-YS-------------IYSS---MVRNSSHRKSFIDSSI 125 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~---------~~-~~-------------~~~~---~~~~~~~r~~fi~~l~ 125 (355)
....++.|+++++++ +++|++-+--... -+ +. .|.. -..+++-|+-+++++.
T Consensus 215 ~~~~~~~lv~~~H~~--gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~ 292 (639)
T PRK14706 215 TPEDFKYLVNHLHGL--GIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSAL 292 (639)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 456799999988888 8999987621100 00 00 0111 1346788999999999
Q ss_pred HHHHHcCCCeEEEEe-eCCC--C----------Ccccc--hHHHHHHHHHHHHhhHH
Q 040722 126 RIARLYGFQGLDFAW-TAPN--T----------STDMF--NVGLLFDEWRIAATKLE 167 (355)
Q Consensus 126 ~~l~~~~~DGididw-e~~~--~----------~~~~~--~~~~~l~~l~~~~l~~~ 167 (355)
-|++++++||+-+|= .... . ...+. .=..|+++|++ .++..
T Consensus 293 ~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~-~v~~~ 348 (639)
T PRK14706 293 KWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNE-VTHHM 348 (639)
T ss_pred HHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHH-HHHHh
Confidence 999999999999993 2210 0 00112 23579999999 88875
No 47
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=87.58 E-value=2.4 Score=38.26 Aligned_cols=84 Identities=10% Similarity=0.104 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEe-eCCCCC---------------cccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEE
Q 040722 118 KSFIDSSIRIARLYGFQGLDFAW-TAPNTS---------------TDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILT 181 (355)
Q Consensus 118 ~~fi~~l~~~l~~~~~DGididw-e~~~~~---------------~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls 181 (355)
-+.--+|.+-..+.|||-|.+|+ .+|.+. +..+.+..||.--|+ ++. .-+|
T Consensus 195 WeYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE-~l~------------vpIS 261 (400)
T COG1306 195 WEYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYARE-ELE------------VPIS 261 (400)
T ss_pred hhhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHH-hcc------------cceE
Confidence 34445778889999999999998 466531 112346677777777 764 5677
Q ss_pred EEecCCCCCC------ccchhhhhccccEEEeeecccCC
Q 040722 182 ARFLYSPPAN------SYLLNSIQRNLNWVHAVTASYYE 214 (355)
Q Consensus 182 ~a~~~~~~~~------~~~~~~l~~~vD~v~lm~yd~~~ 214 (355)
+.+.....+. +-++..++++||.|.-|.|--|-
T Consensus 262 ~DIYG~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSHy 300 (400)
T COG1306 262 ADIYGQNGWSSTDMALGQFWEALSSYVDVISPMFYPSHY 300 (400)
T ss_pred EEeecccCccCCcchhhhhHHHHHhhhhhcccccccccc
Confidence 7776443221 56889999999999999996543
No 48
>PLN02960 alpha-amylase
Probab=87.00 E-value=8.2 Score=40.57 Aligned_cols=92 Identities=10% Similarity=0.022 Sum_probs=61.5
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCC----------CCCc--------------chhh---hhcChhhHHHHHHHH
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMD----------TNYS--------------IYSS---MVRNSSHRKSFIDSS 124 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~----------~~~~--------------~~~~---~~~~~~~r~~fi~~l 124 (355)
....++.|+++++++ +++|++-+--... -+.. .|.. -..+++-|+-+++++
T Consensus 464 tp~dfk~LVd~aH~~--GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna 541 (897)
T PLN02960 464 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNL 541 (897)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHH
Confidence 456799999988887 8999998721000 0000 0111 135678888999999
Q ss_pred HHHHHHcCCCeEEEEee-------------------CCCCCcccchHHHHHHHHHHHHhhHH
Q 040722 125 IRIARLYGFQGLDFAWT-------------------APNTSTDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 125 ~~~l~~~~~DGididwe-------------------~~~~~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
.-||++|++||+-+|=- ++.. .....-..||++|.+ .++..
T Consensus 542 ~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~-~~d~~Ai~fL~~lN~-~v~~~ 601 (897)
T PLN02960 542 NWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQ-YVDRDALIYLILANE-MLHQL 601 (897)
T ss_pred HHHHHHHCCCceeecccceeeeeccCccccCCcccccCCc-cCCchHHHHHHHHHH-HHHhh
Confidence 99999999999999811 1111 122345679999999 88754
No 49
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=86.52 E-value=3.9 Score=37.80 Aligned_cols=86 Identities=6% Similarity=-0.041 Sum_probs=48.7
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEEee----CCCC-----CcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEE
Q 040722 113 NSSHRKSFIDSSIRIARLYGFQGLDFAWT----APNT-----STDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTAR 183 (355)
Q Consensus 113 ~~~~r~~fi~~l~~~l~~~~~DGididwe----~~~~-----~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a 183 (355)
+++-|+-+.+. ++.+.+.||||+.+|.- +... +...+...+|+++|.+ ..|+. .+++.|-
T Consensus 142 ~~~W~~il~~r-l~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~-~ar~~-------~P~~~II-- 210 (315)
T TIGR01370 142 DPEWKAIAFSY-LDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAA-YARAQ-------NPQFVII-- 210 (315)
T ss_pred cHHHHHHHHHH-HHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHH-HHHHH-------CCCEEEE--
Confidence 45566655555 67777889999999952 1111 1223567889999977 77654 4444442
Q ss_pred ecCCCCCCccchhhhhccccEEEeee
Q 040722 184 FLYSPPANSYLLNSIQRNLNWVHAVT 209 (355)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~vD~v~lm~ 209 (355)
+........++-..+...+|.|+..+
T Consensus 211 ~NnG~eil~~~~g~~~~~idgV~~Es 236 (315)
T TIGR01370 211 PQNGEELLRDDHGGLAATVSGWAVEE 236 (315)
T ss_pred ecCchhhhhccccchhhhceEEEecc
Confidence 11111111111123566788887765
No 50
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=84.68 E-value=25 Score=33.42 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=49.2
Q ss_pred CcEEEEeeEEEeCCCc-----EEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEE--eCCCCCC---------Ccch----
Q 040722 48 FTHLICPSADINSTTY-----QLSLSLPSDDNQIAKFVDTVEKENPSITILLSI--GQGMDTN---------YSIY---- 107 (355)
Q Consensus 48 ~thii~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsi--Gg~~~~~---------~~~~---- 107 (355)
+--||...+.+.+++. .+.+.++..-+.++++++.+|++ +.|+++-+ +|..... ++..
T Consensus 52 ~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~ 129 (370)
T cd02929 52 WGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKH--GALAGIELWHGGAHAPNRESRETPLGPSQLPSEF 129 (370)
T ss_pred ceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHC--CCeEEEecccCCCCCCccCCCCCccCCCCCCCCc
Confidence 4445566666666542 12222233456788888888876 78888776 2221100 0000
Q ss_pred -------hhhhcCh---hhHHHHHHHHHHHHHHcCCCeEEEEeeC
Q 040722 108 -------SSMVRNS---SHRKSFIDSSIRIARLYGFQGLDFAWTA 142 (355)
Q Consensus 108 -------~~~~~~~---~~r~~fi~~l~~~l~~~~~DGididwe~ 142 (355)
.+.++.. +..+.|++... .+++-|||||+|+--+
T Consensus 130 ~~~~~~~p~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVEih~ah 173 (370)
T cd02929 130 PTGGPVQAREMDKDDIKRVRRWYVDAAL-RARDAGFDIVYVYAAH 173 (370)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEcccc
Confidence 0111111 23455665444 4555799999999765
No 51
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=84.30 E-value=16 Score=34.22 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=29.1
Q ss_pred CCcEEEEeeEEEeCCCc----EEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEE
Q 040722 47 LFTHLICPSADINSTTY----QLSLSLPSDDNQIAKFVDTVEKENPSITILLSI 96 (355)
Q Consensus 47 ~~thii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsi 96 (355)
.+--|+...+.+.+.+. .+.+..+..-+.++++.+.+|+. +.|+++-+
T Consensus 46 g~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~--G~~~~~QL 97 (336)
T cd02932 46 GAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQ--GAKIGIQL 97 (336)
T ss_pred CCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhc--CCcEEEEc
Confidence 35556666666666541 22333233456788888888876 78888776
No 52
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=83.21 E-value=9.5 Score=35.79 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=30.7
Q ss_pred CcEEEEeeEEEeCCCc----EEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEe
Q 040722 48 FTHLICPSADINSTTY----QLSLSLPSDDNQIAKFVDTVEKENPSITILLSIG 97 (355)
Q Consensus 48 ~thii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiG 97 (355)
+--||.....+++.+. .+.+..+..-+.++++++.+|+. +.|+++-|.
T Consensus 50 ~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~--Ga~i~~QL~ 101 (341)
T PF00724_consen 50 AGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAH--GAKIIAQLW 101 (341)
T ss_dssp TSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHT--TSEEEEEEE
T ss_pred CceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhc--Cccceeecc
Confidence 5556777777776542 22333233445678888888887 899998774
No 53
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=82.91 E-value=6.8 Score=31.26 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEeC-CCCC-------------C-C---------cchhhhhcChhhHHHHHHHHHHHH
Q 040722 73 DNQIAKFVDTVEKENPSITILLSIGQ-GMDT-------------N-Y---------SIYSSMVRNSSHRKSFIDSSIRIA 128 (355)
Q Consensus 73 ~~~~~~~~~~lk~~~p~~kvllsiGg-~~~~-------------~-~---------~~~~~~~~~~~~r~~fi~~l~~~l 128 (355)
...++.++++++++ +++|++-+.- +... + . ..+...--|..-++-++..+.+++
T Consensus 43 ~Dllge~v~a~h~~--Girv~ay~~~~~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~ 120 (132)
T PF14871_consen 43 RDLLGEQVEACHER--GIRVPAYFDFSWDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREIL 120 (132)
T ss_pred cCHHHHHHHHHHHC--CCEEEEEEeeecChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHH
Confidence 45678888888888 7877754421 2110 0 0 113334445567788888888889
Q ss_pred HHcCCCeEEEEe
Q 040722 129 RLYGFQGLDFAW 140 (355)
Q Consensus 129 ~~~~~DGididw 140 (355)
++|++|||-+||
T Consensus 121 ~~y~~DGiF~D~ 132 (132)
T PF14871_consen 121 DRYDVDGIFFDI 132 (132)
T ss_pred HcCCCCEEEecC
Confidence 999999999986
No 54
>PRK10785 maltodextrin glucosidase; Provisional
Probab=82.54 E-value=17 Score=36.90 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=58.7
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCC-CC-------------------Cc--------------chh------h-h
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMD-TN-------------------YS--------------IYS------S-M 110 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~-~~-------------------~~--------------~~~------~-~ 110 (355)
+...++.|+++++++ ++||++-+--... .+ +. .|. . -
T Consensus 224 t~~df~~Lv~~aH~r--GikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN 301 (598)
T PRK10785 224 GDAALLRLRHATQQR--GMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLD 301 (598)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCcccc
Confidence 567899999988888 8999987631100 00 00 011 0 1
Q ss_pred hcChhhHHHHHH---H-HHHHHHH-cCCCeEEEEeeCCCC-CcccchHHHHHHHHHHHHhhHH
Q 040722 111 VRNSSHRKSFID---S-SIRIARL-YGFQGLDFAWTAPNT-STDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 111 ~~~~~~r~~fi~---~-l~~~l~~-~~~DGididwe~~~~-~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
..|++-|+.+++ + +..|+++ +|.||.-||--.... ......-..|++++|+ ++++.
T Consensus 302 ~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~-~vk~~ 363 (598)
T PRK10785 302 FQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQ-AAKEE 363 (598)
T ss_pred CCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHH-HHHhh
Confidence 346788888886 3 4557886 899999999532111 0111224579999999 88765
No 55
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=82.39 E-value=3.6 Score=41.11 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=37.5
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeEEEEee--------CCCCCc--ccchHHHHHHHHHHHHhh
Q 040722 112 RNSSHRKSFIDSSIRIARLYGFQGLDFAWT--------APNTST--DMFNVGLLFDEWRIAATK 165 (355)
Q Consensus 112 ~~~~~r~~fi~~l~~~l~~~~~DGididwe--------~~~~~~--~~~~~~~~l~~l~~~~l~ 165 (355)
.|+.-|.-+++++.+.++..||||++||=- +.+.+. -...|..||+++++ ++.
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~-~~~ 300 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKE-ALP 300 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHH-HST
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHH-hCC
Confidence 466788899999999999999999999931 222212 14579999999999 884
No 56
>PRK14705 glycogen branching enzyme; Provisional
Probab=82.22 E-value=16 Score=40.19 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=61.9
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCCC---------CC--------------cchhh---hhcChhhHHHHHHHHH
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMDT---------NY--------------SIYSS---MVRNSSHRKSFIDSSI 125 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~---------~~--------------~~~~~---~~~~~~~r~~fi~~l~ 125 (355)
....|+.|+++++++ +++||+-+--.... +. ..|.. -..+++-|+-+++++.
T Consensus 813 t~~dfk~lVd~~H~~--GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~ 890 (1224)
T PRK14705 813 HPDEFRFLVDSLHQA--GIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANAL 890 (1224)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHH
Confidence 567799999988888 89999875211100 00 00111 1356788889999999
Q ss_pred HHHHHcCCCeEEEEee-CC--------------CCCcccch--HHHHHHHHHHHHhhHH
Q 040722 126 RIARLYGFQGLDFAWT-AP--------------NTSTDMFN--VGLLFDEWRIAATKLE 167 (355)
Q Consensus 126 ~~l~~~~~DGididwe-~~--------------~~~~~~~~--~~~~l~~l~~~~l~~~ 167 (355)
-|+++|++||+-+|-- .. ..-..+.| =..|++++.+ .++..
T Consensus 891 ~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~-~v~~~ 948 (1224)
T PRK14705 891 YWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNA-TVYKT 948 (1224)
T ss_pred HHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHH-HHHHH
Confidence 9999999999999852 11 00011122 3679999999 88865
No 57
>PLN02877 alpha-amylase/limit dextrinase
Probab=81.66 E-value=8.4 Score=41.06 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEe-------CCCCCC-------Ccchhh----------------hhcChhhHHHHHHHH
Q 040722 75 QIAKFVDTVEKENPSITILLSIG-------QGMDTN-------YSIYSS----------------MVRNSSHRKSFIDSS 124 (355)
Q Consensus 75 ~~~~~~~~lk~~~p~~kvllsiG-------g~~~~~-------~~~~~~----------------~~~~~~~r~~fi~~l 124 (355)
.|+.|++.++++ +++|++-+- |..... +..|.+ ...++.-|+-+++++
T Consensus 467 efk~mV~~lH~~--GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl 544 (970)
T PLN02877 467 EFRKMVQALNRI--GLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDL 544 (970)
T ss_pred HHHHHHHHHHHC--CCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHH
Confidence 588899888877 899998862 110000 000100 112355677889999
Q ss_pred HHHHHHcCCCeEEEEeeCCCC
Q 040722 125 IRIARLYGFQGLDFAWTAPNT 145 (355)
Q Consensus 125 ~~~l~~~~~DGididwe~~~~ 145 (355)
.-|+++|++||.-+|-.....
T Consensus 545 ~yW~~ey~VDGFRFDlmg~i~ 565 (970)
T PLN02877 545 LNWAVNYKVDGFRFDLMGHLM 565 (970)
T ss_pred HHHHHHhCCCEEEEEcccccc
Confidence 999999999999999875543
No 58
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=80.76 E-value=24 Score=33.73 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC
Q 040722 73 DNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT 145 (355)
Q Consensus 73 ~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~ 145 (355)
...+...+..+|++.|.+.+++||.|... .+ .+. .+++.+++.|.|+|+|++--|..
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s--~~-------------~~~-~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYN--KD-------------AWE-EIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCC--HH-------------HHH-HHHHHHHhcCCCEEEEECCCCCC
Confidence 34444445567777788999999955221 22 222 22334566799999999987765
No 59
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=80.26 E-value=21 Score=32.57 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=36.3
Q ss_pred CCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCC-------cccchHHHHHHHHH
Q 040722 88 PSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS-------TDMFNVGLLFDEWR 160 (355)
Q Consensus 88 p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~-------~~~~~~~~~l~~l~ 160 (355)
.+.+++++|+|.. .+.|++ .++.+++.|+|+|+|++-.|... .+......+++++|
T Consensus 88 ~~~p~ivsi~g~~----------------~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr 150 (296)
T cd04740 88 FGTPVIASIAGST----------------VEEFVE-VAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK 150 (296)
T ss_pred CCCcEEEEEecCC----------------HHHHHH-HHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHH
Confidence 4688999998742 134544 44456777999999998776642 12223345566666
Q ss_pred H
Q 040722 161 I 161 (355)
Q Consensus 161 ~ 161 (355)
+
T Consensus 151 ~ 151 (296)
T cd04740 151 K 151 (296)
T ss_pred h
Confidence 5
No 60
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=80.22 E-value=50 Score=34.00 Aligned_cols=197 Identities=13% Similarity=0.082 Sum_probs=109.5
Q ss_pred CCCcEEEE-eeEEEeCCCc--EEeeCCCCC---hhHHHHHHHHHHhhCCCcEEEEEE--eCCCCCCCc------------
Q 040722 46 DLFTHLIC-PSADINSTTY--QLSLSLPSD---DNQIAKFVDTVEKENPSITILLSI--GQGMDTNYS------------ 105 (355)
Q Consensus 46 ~~~thii~-~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~lk~~~p~~kvllsi--Gg~~~~~~~------------ 105 (355)
-..+||.+ +|+..+.||. .+.+.|... ...|.+..=.++.+. ++||...+ -++.. .+.
T Consensus 346 ~~~~~VyLqafadp~gdg~~~~lYFpnr~lPmraDlfnrvawql~tR~-~v~vyAWmpvl~~~l-~~~~~~~~~~~~~~~ 423 (672)
T PRK14581 346 LRVTHVFLQAFSDPKGDGNIRQVYFPNRWIPMRQDLFNRVVWQLASRP-DVEVYAWMPVLAFDM-DPSLPRITRIDPKTG 423 (672)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEecCCcccHHHhhhhHHHHHHHhhh-CceEEEeeehhhccC-CcccchhhhcccccC
Confidence 35888888 6666666652 356664332 334555433466664 78887543 33321 000
Q ss_pred -------chhhhhc-ChhhHHHHHHHHHHHHHHc-CCCeEEEEeeCCCCC----------------------------c-
Q 040722 106 -------IYSSMVR-NSSHRKSFIDSSIRIARLY-GFQGLDFAWTAPNTS----------------------------T- 147 (355)
Q Consensus 106 -------~~~~~~~-~~~~r~~fi~~l~~~l~~~-~~DGididwe~~~~~----------------------------~- 147 (355)
.+.++-- +++. .+.|.+|-+=|..| .||||-++=+...++ +
T Consensus 424 ~~~~~~~~y~rlspf~~~~-~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~ 502 (672)
T PRK14581 424 KTSIDPDQYRRLSPFNPEV-RQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEM 502 (672)
T ss_pred ccccCCCCccccCCCCHHH-HHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHH
Confidence 1111100 2333 35788888888887 799998875422110 0
Q ss_pred -------ccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCC----CCC---ccchhhhhccccEEEeeecccC
Q 040722 148 -------DMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSP----PAN---SYLLNSIQRNLNWVHAVTASYY 213 (355)
Q Consensus 148 -------~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~----~~~---~~~~~~l~~~vD~v~lm~yd~~ 213 (355)
....+..|-.+|++ .+++.. ++.+...--+.+.+ ... +-++....+..||+.+|+|-+.
T Consensus 503 ~~~w~~~k~~~l~~f~~~l~~-~v~~~~------~p~~~tarniya~~~l~p~~~~w~aQ~l~~~~~~yD~~a~mamp~m 575 (672)
T PRK14581 503 MQRWTRYKSKYLIDFTNELTR-EVRDIR------GPQVKSARNIFAMPILEPESEAWFAQNLDDFLANYDWVAPMAMPLM 575 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhc------CccceehhcccccccCChhHHHHHHhHHHHHHhhcchhHHhhchhh
Confidence 12345678888888 877641 12232222222222 111 4567788889999999998754
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCCCCCCceEEeeecceeeee
Q 040722 214 EPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWT 268 (355)
Q Consensus 214 ~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~~~~Kl~lglp~yG~~~~ 268 (355)
.. ...+.+ ..+....++.+.+.-...+|+++-|.. ++|+
T Consensus 576 e~----~~~~~~----------~~w~~~l~~~v~~~~~~~~k~vfelQ~--~dw~ 614 (672)
T PRK14581 576 EK----VPLSES----------NEWLAELVNKVAQRPGALEKTVFELQS--KDWT 614 (672)
T ss_pred hc----cccccH----------HHHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 22 111111 346666666665554467999999976 4564
No 61
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=80.03 E-value=9.5 Score=35.40 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=26.9
Q ss_pred CcEEEEeeEEEeCCCc----EEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEE
Q 040722 48 FTHLICPSADINSTTY----QLSLSLPSDDNQIAKFVDTVEKENPSITILLSI 96 (355)
Q Consensus 48 ~thii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsi 96 (355)
.--||.....+.+.+. .+.+.++..-..++++++.+|+. +.|+++-+
T Consensus 47 ~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~--g~~~~~Ql 97 (327)
T cd02803 47 VGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAH--GAKIFAQL 97 (327)
T ss_pred CcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhC--CCHhhHHh
Confidence 4446666666666542 12222233445678888878777 66666555
No 62
>PLN03244 alpha-amylase; Provisional
Probab=79.96 E-value=25 Score=36.62 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCCC----------C--Cc-chh--------------hhhcChhhHHHHHHHH
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMDT----------N--YS-IYS--------------SMVRNSSHRKSFIDSS 124 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~----------~--~~-~~~--------------~~~~~~~~r~~fi~~l 124 (355)
....++.|+++++++ +++|+|-+--.... + .. -|. --..+++-|+-+++++
T Consensus 439 TPeDLK~LVD~aH~~--GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 439 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHH
Confidence 466799999988887 89999986321100 0 00 011 1123567888899999
Q ss_pred HHHHHHcCCCeEEEE
Q 040722 125 IRIARLYGFQGLDFA 139 (355)
Q Consensus 125 ~~~l~~~~~DGidid 139 (355)
.-|+++|++||+-+|
T Consensus 517 ~yWleEyhIDGFRfD 531 (872)
T PLN03244 517 NWWITEYQIDGFQFH 531 (872)
T ss_pred HHHHHHhCcCcceee
Confidence 999999999999998
No 63
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=79.56 E-value=11 Score=39.00 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEeCCCCC--------------CCcch-----------------h--hhhcChhhHHH
Q 040722 73 DNQIAKFVDTVEKENPSITILLSIGQGMDT--------------NYSIY-----------------S--SMVRNSSHRKS 119 (355)
Q Consensus 73 ~~~~~~~~~~lk~~~p~~kvllsiGg~~~~--------------~~~~~-----------------~--~~~~~~~~r~~ 119 (355)
...++.|+++++++ +++|++-+-=.... ++..+ . --..++.-|+-
T Consensus 244 ~~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~ 321 (688)
T TIGR02100 244 VAEFKTMVRALHDA--GIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQM 321 (688)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHH
Confidence 45799999988888 89999886211000 00000 0 01235677888
Q ss_pred HHHHHHHHHHHcCCCeEEEEeeCCCCC--cccchHHHHHHHHHH
Q 040722 120 FIDSSIRIARLYGFQGLDFAWTAPNTS--TDMFNVGLLFDEWRI 161 (355)
Q Consensus 120 fi~~l~~~l~~~~~DGididwe~~~~~--~~~~~~~~~l~~l~~ 161 (355)
+++++.-|++++++||+-||--..... ........|+++|+.
T Consensus 322 i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 322 VMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred HHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 899999999999999999997532221 111223567777776
No 64
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=79.40 E-value=55 Score=30.64 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=48.8
Q ss_pred CcEEEEeeEEEeCCCc----EEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEe--CCCCCCC-------cc--------
Q 040722 48 FTHLICPSADINSTTY----QLSLSLPSDDNQIAKFVDTVEKENPSITILLSIG--QGMDTNY-------SI-------- 106 (355)
Q Consensus 48 ~thii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiG--g~~~~~~-------~~-------- 106 (355)
+--|+...+.+++++. .+.+..+..-+.++++.+.+|+. +.++++-+. |... .. +.
T Consensus 51 ~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~--G~~i~~QL~H~G~~~-~~~~~~~~ps~~~~~~~~~ 127 (337)
T PRK13523 51 VGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDH--GAKAAIQLAHAGRKA-ELEGDIVAPSAIPFDEKSK 127 (337)
T ss_pred CeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhc--CCEEEEEccCCCCCC-CCCCCccCCCCCCCCCCCC
Confidence 4455666566665531 22233233456678888888876 788887773 2211 00 00
Q ss_pred hhhhhcC---hhhHHHHHHHHHHHHHHcCCCeEEEEeeC
Q 040722 107 YSSMVRN---SSHRKSFIDSSIRIARLYGFQGLDFAWTA 142 (355)
Q Consensus 107 ~~~~~~~---~~~r~~fi~~l~~~l~~~~~DGididwe~ 142 (355)
..+.++. .+-.+.|++.. ..+++-|||||+|+--+
T Consensus 128 ~p~~mt~eeI~~ii~~f~~aA-~~a~~aGfDgVeih~ah 165 (337)
T PRK13523 128 TPVEMTKEQIKETVLAFKQAA-VRAKEAGFDVIEIHGAH 165 (337)
T ss_pred CCCcCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 0111111 13344566544 44556799999999763
No 65
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=78.70 E-value=14 Score=38.02 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=75.5
Q ss_pred ChhhHHHHHHHHHH-HHHHcCCCeEEEEeeCCCCC-c-----------------------------------ccchHHHH
Q 040722 113 NSSHRKSFIDSSIR-IARLYGFQGLDFAWTAPNTS-T-----------------------------------DMFNVGLL 155 (355)
Q Consensus 113 ~~~~r~~fi~~l~~-~l~~~~~DGididwe~~~~~-~-----------------------------------~~~~~~~~ 155 (355)
+++.|+ +|.+|.. +.+.+.+|||.+|=+-..++ + ..+.+..|
T Consensus 439 ~pe~r~-~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f 517 (671)
T PRK14582 439 DDRVRA-QVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDF 517 (671)
T ss_pred CHHHHH-HHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 445554 5555555 55556999999986543221 0 11234578
Q ss_pred HHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCC----C---ccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCC
Q 040722 156 FDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPA----N---SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALY 228 (355)
Q Consensus 156 l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~----~---~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~ 228 (355)
-.+|++ .++... ++.+...--+.+.+-. . .-++....+.-||+.+|+.-+... ...+.+
T Consensus 518 ~~~l~~-~v~~~~------~~~~~tarni~a~~~l~p~~e~w~aQ~l~~~~~~yD~~a~mampyme~----~~~~~~--- 583 (671)
T PRK14582 518 TLELSA-RVKAIR------GPQVKTARNIFALPVIQPESEAWFAQNLDDFLKSYDWTAPMAMPLMEG----VAEKSS--- 583 (671)
T ss_pred HHHHHH-HHHhhc------CccceeeccccccccCChhHHHHHHhHHHHHHhhcchhhhhcchhhhc----cCcccH---
Confidence 888888 777641 1223322222222211 1 456777888899999999544321 111111
Q ss_pred CCCCCCCcccHHHHHHHHHHCCCCCCceEEeeecceeeee
Q 040722 229 GSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWT 268 (355)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~g~~~~Kl~lglp~yG~~~~ 268 (355)
..++.+.++.+.+.-...+|+|+-|.. ++|+
T Consensus 584 -------~~wl~~l~~~v~~~~~~~~k~vfelq~--~dw~ 614 (671)
T PRK14582 584 -------DAWLIQLVNQVKNIPGALDKTIFELQA--RDWQ 614 (671)
T ss_pred -------HHHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 346777777666554567999999976 4564
No 66
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=78.23 E-value=35 Score=31.33 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCC---------
Q 040722 76 IAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS--------- 146 (355)
Q Consensus 76 ~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~--------- 146 (355)
+.+.+..+++..+...+++++-|... + +.+++ +++.+.+.+.|+|+|++-.|...
T Consensus 86 ~~~~~~~~~~~~~~~p~i~si~G~~~------------~---~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l 149 (299)
T cd02940 86 WLKEIRELKKDFPDKILIASIMCEYN------------K---EDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAV 149 (299)
T ss_pred HHHHHHHHHhhCCCCeEEEEecCCCC------------H---HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhh
Confidence 33334445555456788899877421 1 34443 34455667899999999877641
Q ss_pred -cccchHHHHHHHHHH
Q 040722 147 -TDMFNVGLLFDEWRI 161 (355)
Q Consensus 147 -~~~~~~~~~l~~l~~ 161 (355)
.+.+.+.++++.+|+
T Consensus 150 ~~~~~~~~~iv~~v~~ 165 (299)
T cd02940 150 GQDPELVEEICRWVRE 165 (299)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 233445566666666
No 67
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=77.94 E-value=45 Score=31.60 Aligned_cols=127 Identities=14% Similarity=0.209 Sum_probs=66.9
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCC---C-CC-----------------cchhhhhcCh---hhHHHHHHHHHHH
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMD---T-NY-----------------SIYSSMVRNS---SHRKSFIDSSIRI 127 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~---~-~~-----------------~~~~~~~~~~---~~r~~fi~~l~~~ 127 (355)
+-..++++.+.+|+. +.|+++-|..... . .+ ....+.++.+ +.++.|++...+-
T Consensus 81 ~i~~~~~vt~avH~~--G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA 158 (363)
T COG1902 81 QIPGLKRLTEAVHAH--GAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRA 158 (363)
T ss_pred HhHHHHHHHHHHHhc--CCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 356788888888887 6788887733220 0 00 0011222211 2334455544444
Q ss_pred HHHcCCCeEEEEeeC---------CCC--Cccc-----chHH----HHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCC
Q 040722 128 ARLYGFQGLDFAWTA---------PNT--STDM-----FNVG----LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYS 187 (355)
Q Consensus 128 l~~~~~DGididwe~---------~~~--~~~~-----~~~~----~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~ 187 (355)
. +-|||||+|+=-+ |.+ .+|. +|=. ..++.+|+ +. +..+.|.+.+.+.
T Consensus 159 ~-~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~-~v----------g~~~~vg~Rls~~ 226 (363)
T COG1902 159 K-EAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVRE-AV----------GADFPVGVRLSPD 226 (363)
T ss_pred H-HcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHH-Hh----------CCCceEEEEECcc
Confidence 4 4799999998543 211 1111 2223 34455555 54 3456788888875
Q ss_pred CC-CC-ccc-------hhhhhcc--ccEEEeeeccc
Q 040722 188 PP-AN-SYL-------LNSIQRN--LNWVHAVTASY 212 (355)
Q Consensus 188 ~~-~~-~~~-------~~~l~~~--vD~v~lm~yd~ 212 (355)
.. .. +++ .+.|.+. +|++++..-+.
T Consensus 227 d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~ 262 (363)
T COG1902 227 DFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGY 262 (363)
T ss_pred ccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccc
Confidence 55 22 332 2334433 69998876443
No 68
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=77.58 E-value=64 Score=30.38 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=76.5
Q ss_pred EEEeeEEEeCCCc----EEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEe--CCCCCCC-----------cch------
Q 040722 51 LICPSADINSTTY----QLSLSLPSDDNQIAKFVDTVEKENPSITILLSIG--QGMDTNY-----------SIY------ 107 (355)
Q Consensus 51 ii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiG--g~~~~~~-----------~~~------ 107 (355)
||...+.+.+.+. .+.+..+..-+.++++++.+++. +.|+++-+. |... .. +..
T Consensus 51 Ii~e~~~v~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~--G~~i~~QL~h~G~~~-~~~~~~~~~~~~ps~~~~~~~~ 127 (353)
T cd04735 51 VITGATYVSPSGIGFEGGFSADDDSDIPGLRKLAQAIKSK--GAKAILQIFHAGRMA-NPALVPGGDVVSPSAIAAFRPG 127 (353)
T ss_pred EEECceEECcccCcCCCCceecChhhhHHHHHHHHHHHhC--CCeEEEEecCCCCCC-CccccCCCceecCCCCcccCCC
Confidence 4445555555431 12233244567788898888887 788887762 2211 00 000
Q ss_pred ---hhhhcC---hhhHHHHHHHHHHHHHHcCCCeEEEEeeC---------CCC--Cccc-----ch----HHHHHHHHHH
Q 040722 108 ---SSMVRN---SSHRKSFIDSSIRIARLYGFQGLDFAWTA---------PNT--STDM-----FN----VGLLFDEWRI 161 (355)
Q Consensus 108 ---~~~~~~---~~~r~~fi~~l~~~l~~~~~DGididwe~---------~~~--~~~~-----~~----~~~~l~~l~~ 161 (355)
.+.++. .+-.+.|++...+ +++-|||||+|+--+ |.. ..|+ .| ..+.++++|+
T Consensus 128 ~~~p~~mt~~eI~~ii~~f~~aA~~-a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~ 206 (353)
T cd04735 128 AHTPRELTHEEIEDIIDAFGEATRR-AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQE 206 (353)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHH-HHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHH
Confidence 011111 1334456655544 556799999999642 322 1111 11 2345556666
Q ss_pred HHhhHHHhhccCCCCcEEEEEEecCCCCCC-ccc-------hhhhhcc-ccEEEeeecc
Q 040722 162 AATKLEAKNSSRQQSQLILTARFLYSPPAN-SYL-------LNSIQRN-LNWVHAVTAS 211 (355)
Q Consensus 162 ~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~-------~~~l~~~-vD~v~lm~yd 211 (355)
++.... .+++.|.+.+.+..... +.+ .+.+.+. +|+|.|....
T Consensus 207 -~vg~~~------~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~ 258 (353)
T cd04735 207 -VIDKHA------DKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWD 258 (353)
T ss_pred -Hhcccc------CCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 552000 14578888887643221 221 2333333 8999987643
No 69
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=76.98 E-value=36 Score=32.87 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=41.0
Q ss_pred HHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCC----------cccc
Q 040722 81 DTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS----------TDMF 150 (355)
Q Consensus 81 ~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~----------~~~~ 150 (355)
+.+++..+...++++|.|... + +.++ ..+..+++.|.|+|+|++-.|... .+.+
T Consensus 91 ~~~~~~~~~~p~i~si~g~~~------------~---~~~~-~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~ 154 (420)
T PRK08318 91 RRVKRDYPDRALIASIMVECN------------E---EEWK-EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPE 154 (420)
T ss_pred HHHHhhCCCceEEEEeccCCC------------H---HHHH-HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHH
Confidence 345555556778899987421 1 2233 344555677899999999988631 2344
Q ss_pred hHHHHHHHHHH
Q 040722 151 NVGLLFDEWRI 161 (355)
Q Consensus 151 ~~~~~l~~l~~ 161 (355)
.+.++++.+++
T Consensus 155 ~~~~i~~~v~~ 165 (420)
T PRK08318 155 LVEMYTRWVKR 165 (420)
T ss_pred HHHHHHHHHHh
Confidence 56666666666
No 70
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=76.91 E-value=16 Score=31.90 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=38.2
Q ss_pred HhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCC-----------cccchH
Q 040722 84 EKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS-----------TDMFNV 152 (355)
Q Consensus 84 k~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~-----------~~~~~~ 152 (355)
.....+.+++++|+|.. + +.|++.. ..+++.|||||+|+.-.|... .+....
T Consensus 49 ~~~~~~~p~~~qi~g~~-------------~---~~~~~aa-~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~ 111 (231)
T cd02801 49 TRNPEERPLIVQLGGSD-------------P---ETLAEAA-KIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELV 111 (231)
T ss_pred ccCccCCCEEEEEcCCC-------------H---HHHHHHH-HHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHH
Confidence 34456799999999853 2 3444333 344557999999997665420 122334
Q ss_pred HHHHHHHHHHHh
Q 040722 153 GLLFDEWRIAAT 164 (355)
Q Consensus 153 ~~~l~~l~~~~l 164 (355)
.++++++|+ ..
T Consensus 112 ~eii~~v~~-~~ 122 (231)
T cd02801 112 AEIVRAVRE-AV 122 (231)
T ss_pred HHHHHHHHH-hc
Confidence 566666666 54
No 71
>PRK03705 glycogen debranching enzyme; Provisional
Probab=76.09 E-value=12 Score=38.36 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEeCCCCC----CC----------c------------chh-----hhhcChhhHHHHHH
Q 040722 74 NQIAKFVDTVEKENPSITILLSIGQGMDT----NY----------S------------IYS-----SMVRNSSHRKSFID 122 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiGg~~~~----~~----------~------------~~~-----~~~~~~~~r~~fi~ 122 (355)
..|+.|+++++++ +++|++-+--.... .. . .+. --..++.-|+-+++
T Consensus 242 ~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 242 DEFRDAVKALHKA--GIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHH
Confidence 4799999988887 89999886221000 00 0 000 11246788899999
Q ss_pred HHHHHHHHcCCCeEEEEee
Q 040722 123 SSIRIARLYGFQGLDFAWT 141 (355)
Q Consensus 123 ~l~~~l~~~~~DGididwe 141 (355)
++.-|+++|++||+-||--
T Consensus 320 ~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHHhCCCEEEEEcH
Confidence 9999999999999999964
No 72
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=75.34 E-value=33 Score=31.77 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=28.5
Q ss_pred hCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCC
Q 040722 86 ENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPN 144 (355)
Q Consensus 86 ~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~ 144 (355)
...+..+++.|+|... +.|++ .+..+++.|+|||||+.--|.
T Consensus 59 ~~~~~p~i~ql~g~~~----------------~~~~~-aa~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 59 AEDETPISVQLFGSDP----------------DTMAE-AAKINEELGADIIDINMGCPV 100 (319)
T ss_pred CCccceEEEEEeCCCH----------------HHHHH-HHHHHHhCCCCEEEEECCCCH
Confidence 3446778899988532 23333 334567789999999987664
No 73
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=75.08 E-value=38 Score=31.61 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCccc---
Q 040722 73 DNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDM--- 149 (355)
Q Consensus 73 ~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~--- 149 (355)
...+.+.+..++++. ++.++++|+|... ..+ ..++..+++.|+|+|+|++-.|....+.
T Consensus 86 ~d~~~~~i~~~~~~~-~~pvi~sI~g~~~----------------~e~-~~~a~~~~~agad~ielN~scpp~~~~~~g~ 147 (334)
T PRK07565 86 PEEYLELIRRAKEAV-DIPVIASLNGSSA----------------GGW-VDYARQIEQAGADALELNIYYLPTDPDISGA 147 (334)
T ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccCCH----------------HHH-HHHHHHHHHcCCCEEEEeCCCCCCCCCCccc
Confidence 334444444455543 6899999988432 123 2444556677999999998654432211
Q ss_pred ---chHHHHHHHHHHHHh
Q 040722 150 ---FNVGLLFDEWRIAAT 164 (355)
Q Consensus 150 ---~~~~~~l~~l~~~~l 164 (355)
+.+.++++++++ ..
T Consensus 148 ~~~~~~~eil~~v~~-~~ 164 (334)
T PRK07565 148 EVEQRYLDILRAVKS-AV 164 (334)
T ss_pred cHHHHHHHHHHHHHh-cc
Confidence 235566677776 54
No 74
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=74.49 E-value=19 Score=34.02 Aligned_cols=47 Identities=13% Similarity=0.052 Sum_probs=26.4
Q ss_pred CcEEEEeeEEEeCCCc-----EEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEE
Q 040722 48 FTHLICPSADINSTTY-----QLSLSLPSDDNQIAKFVDTVEKENPSITILLSI 96 (355)
Q Consensus 48 ~thii~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsi 96 (355)
.--||...+.++..+. .+.+..+..-+.++++++.+|+. +.|+++-|
T Consensus 47 ~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~~l~d~vh~~--Ga~i~~QL 98 (361)
T cd04747 47 VGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVVDEVHAA--GGKIAPQL 98 (361)
T ss_pred ccEEEecceEeccccccCCCCCCccCCHHHHHHHHHHHHHHHhc--CCEEEEec
Confidence 3445555556653321 11222122345677777777777 78888877
No 75
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=73.14 E-value=32 Score=31.47 Aligned_cols=56 Identities=9% Similarity=0.111 Sum_probs=35.0
Q ss_pred CcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcC-CCeEEEEeeCCCCC-------cccchHHHHHHHHH
Q 040722 89 SITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYG-FQGLDFAWTAPNTS-------TDMFNVGLLFDEWR 160 (355)
Q Consensus 89 ~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~-~DGididwe~~~~~-------~~~~~~~~~l~~l~ 160 (355)
+..++++|+|.. .+.|++ +.+.+++.| +|||+|+.--|... .+.+...++++++|
T Consensus 91 ~~p~i~si~g~~----------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr 153 (301)
T PRK07259 91 DTPIIANVAGST----------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK 153 (301)
T ss_pred CCcEEEEeccCC----------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 678999998842 144544 344567888 99999998655431 12233445555566
Q ss_pred H
Q 040722 161 I 161 (355)
Q Consensus 161 ~ 161 (355)
+
T Consensus 154 ~ 154 (301)
T PRK07259 154 E 154 (301)
T ss_pred H
Confidence 5
No 76
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=72.39 E-value=10 Score=38.43 Aligned_cols=83 Identities=11% Similarity=-0.117 Sum_probs=36.5
Q ss_pred HHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChh-hHHHHHHHHHHHH-HHcCCCeEEEEeeCCCCCcccchHHHH
Q 040722 78 KFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSS-HRKSFIDSSIRIA-RLYGFQGLDFAWTAPNTSTDMFNVGLL 155 (355)
Q Consensus 78 ~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~-~r~~fi~~l~~~l-~~~~~DGididwe~~~~~~~~~~~~~~ 155 (355)
.|++.+|++||++|+.+-= |.. +.....-...+. +.+.-+.-++++| -.+...|++||+-.+- .++..=...
T Consensus 116 ~L~~eAKkrNP~ikl~~L~--W~~--PgW~~~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~--NEr~~~~~~ 189 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLP--WGF--PGWVGNGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIW--NERGFDVNY 189 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEE--S-B---GGGGTTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S---TTS---HHH
T ss_pred hhHHHHHhhCCCCeEEEec--cCC--CccccCCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechh--hccCCChhH
Confidence 4667899999999987431 222 221111111111 1112222345555 2233345678876553 333333578
Q ss_pred HHHHHHHHhhHH
Q 040722 156 FDEWRIAATKLE 167 (355)
Q Consensus 156 l~~l~~~~l~~~ 167 (355)
+|.||. .|++.
T Consensus 190 ik~lr~-~l~~~ 200 (669)
T PF02057_consen 190 IKWLRK-ALNSN 200 (669)
T ss_dssp HHHHHH-HHHHT
T ss_pred HHHHHH-HHhhc
Confidence 999999 99876
No 77
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=72.09 E-value=58 Score=27.29 Aligned_cols=167 Identities=17% Similarity=0.147 Sum_probs=95.8
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCC
Q 040722 111 VRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPA 190 (355)
Q Consensus 111 ~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~ 190 (355)
+-+|-+|+.-+..+. -|.|=||+ ..|...+=..||.-.++++|+ ... ....+|.++.--+..
T Consensus 4 LvSPin~eEA~eAie-----GGAdIiDV--KNP~EGSLGANFPWvIr~i~E-v~p----------~d~~vSAT~GDvpYK 65 (235)
T COG1891 4 LVSPINREEAIEAIE-----GGADIIDV--KNPAEGSLGANFPWVIREIRE-VVP----------EDQEVSATVGDVPYK 65 (235)
T ss_pred eeccCCHHHHHHHhh-----CCCceEec--cCcccCcccCCChHHHHHHHH-hCc----------cceeeeeeecCCCCC
Confidence 345555665554432 35565444 667665666899999999999 663 347888887754444
Q ss_pred Cc-cchhhh---hccccEEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHH-----CCCCCCceEEeee
Q 040722 191 NS-YLLNSI---QRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIE-----RGLSADKLVMGLP 261 (355)
Q Consensus 191 ~~-~~~~~l---~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~-----~g~~~~Kl~lglp 261 (355)
.+ ..+..+ ..-+||+-+--|+.. +-+++++.+.+ ..++++|+++.-
T Consensus 66 PGT~slAalGaav~GaDYiKVGLYg~k------------------------n~~eA~e~m~~vvrAVkd~d~~k~VVAa- 120 (235)
T COG1891 66 PGTASLAALGAAVAGADYIKVGLYGTK------------------------NEEEALEVMKNVVRAVKDFDPSKKVVAA- 120 (235)
T ss_pred CchHHHHHHHhHhhCCceEEEeecccc------------------------cHHHHHHHHHHHHHHHhccCCCceEEec-
Confidence 32 223333 345899999887643 22333332221 237888888754
Q ss_pred cceeeeeecCCCCCCCCCcccCCCCCCCcccchHHHHHHHHhCCCCeeE-EEecceeEEEEE-eCCEEEEECCHHHHHHH
Q 040722 262 FYGYAWTLVKPEDNGIGAAATGPALHGNGLVTYKEIKNYIKNYCPNVQV-MYNTIYVMNYFS-TRTIWFGFDDVEAVRAK 339 (355)
Q Consensus 262 ~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~-~~d~~~~~~y~~-~~~~~i~ydd~~S~~~K 339 (355)
-|+-.++. +.++--.+.+...+.+ ..+ ..|. +. .++..+-|.+.+-+..=
T Consensus 121 GYaDa~Rv--------------------gsv~Pl~~P~vaa~ag--~DvaMvDT------aiKDGkslFdfm~~e~l~eF 172 (235)
T COG1891 121 GYADAHRV--------------------GSVSPLLLPEVAAEAG--ADVAMVDT------AIKDGKSLFDFMDEEELEEF 172 (235)
T ss_pred cccchhhc--------------------cCcCccccHHHHHhcC--CCEEEEec------ccccchhHHhhhcHHHHHHH
Confidence 34433332 2222223333333333 211 1111 11 45566678999999999
Q ss_pred HHHHHHcCC
Q 040722 340 IAYAKEKRL 348 (355)
Q Consensus 340 ~~~~~~~gl 348 (355)
++.++++||
T Consensus 173 vd~Ah~hGL 181 (235)
T COG1891 173 VDLAHEHGL 181 (235)
T ss_pred HHHHHHcch
Confidence 999999986
No 78
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=71.79 E-value=23 Score=32.86 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=28.5
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCC
Q 040722 111 VRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPN 144 (355)
Q Consensus 111 ~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~ 144 (355)
+.+|+.|+-+.+.+.+.+.+.|+||+=+|+-.|.
T Consensus 128 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~ 161 (319)
T cd06591 128 ATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPE 161 (319)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCC
Confidence 4578888888898888899999999999996543
No 79
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=71.77 E-value=45 Score=34.83 Aligned_cols=92 Identities=11% Similarity=0.092 Sum_probs=59.1
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCCC----------C---Ccchh--------------hhhcChhhHHHHHHHH
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMDT----------N---YSIYS--------------SMVRNSSHRKSFIDSS 124 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~----------~---~~~~~--------------~~~~~~~~r~~fi~~l 124 (355)
....++.++++++++ +++|++-+--.... + ..-|. --..+++-|+-+++++
T Consensus 298 tp~dlk~LVd~aH~~--GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~ 375 (758)
T PLN02447 298 TPEDLKYLIDKAHSL--GLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNL 375 (758)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHH
Confidence 456799999988887 89999886321100 0 00010 0123567788899999
Q ss_pred HHHHHHcCCCeEEEEee-------------CCC-------CCcccchHHHHHHHHHHHHhhHH
Q 040722 125 IRIARLYGFQGLDFAWT-------------APN-------TSTDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 125 ~~~l~~~~~DGididwe-------------~~~-------~~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
.-|+++|++||+-+|=- +.. ...+ ..=..||+++.. .++..
T Consensus 376 ~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d-~~a~~fL~~~N~-~i~~~ 436 (758)
T PLN02447 376 RWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATD-VDAVVYLMLAND-LLHGL 436 (758)
T ss_pred HHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccC-hHHHHHHHHHHH-HHHHh
Confidence 99999999999999821 110 0012 122568888888 88765
No 80
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=71.33 E-value=28 Score=32.25 Aligned_cols=93 Identities=12% Similarity=0.065 Sum_probs=51.7
Q ss_pred CcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC-----------CcccchHHHHHH
Q 040722 89 SITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT-----------STDMFNVGLLFD 157 (355)
Q Consensus 89 ~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~-----------~~~~~~~~~~l~ 157 (355)
...+.+.|.|.+ + +.|++... .+.+.|+|||||+.--|.. -.+.....++++
T Consensus 62 e~p~~vQl~g~~-------------p---~~~~~aA~-~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~ 124 (312)
T PRK10550 62 GTLVRIQLLGQY-------------P---QWLAENAA-RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 (312)
T ss_pred CCcEEEEeccCC-------------H---HHHHHHHH-HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHH
Confidence 467888888753 2 34554443 3466799999999987752 023334455666
Q ss_pred HHHHHHhhHHHhhccCCCCcEEEEEEecCCCCC-C-ccchhh-hhcc-ccEEEeee
Q 040722 158 EWRIAATKLEAKNSSRQQSQLILTARFLYSPPA-N-SYLLNS-IQRN-LNWVHAVT 209 (355)
Q Consensus 158 ~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~-~-~~~~~~-l~~~-vD~v~lm~ 209 (355)
++|+ ++. .++-||+-+...... . ..++.. +.+. +|.+.|..
T Consensus 125 avr~-~~~----------~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~ 169 (312)
T PRK10550 125 AMRE-AVP----------AHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHG 169 (312)
T ss_pred HHHH-hcC----------CCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECC
Confidence 6666 552 225566666543211 1 122222 2233 88888753
No 81
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=71.02 E-value=7.7 Score=27.91 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=32.5
Q ss_pred eCCCCCCCcchhhhhcC-hhhHHHHHHHHHHHHHHcCCCeEEEEe
Q 040722 97 GQGMDTNYSIYSSMVRN-SSHRKSFIDSSIRIARLYGFQGLDFAW 140 (355)
Q Consensus 97 Gg~~~~~~~~~~~~~~~-~~~r~~fi~~l~~~l~~~~~DGididw 140 (355)
|-|.. ....+.....+ +.-|+.+++.|++.+..-.+|||-+|-
T Consensus 32 ~~W~~-~~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 32 SEWPG-YPGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred eecCC-CCceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 44543 34444444445 899999999999999988899999984
No 82
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=70.43 E-value=22 Score=33.88 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEE
Q 040722 73 DNQIAKFVDTVEKENPSITILLSI 96 (355)
Q Consensus 73 ~~~~~~~~~~lk~~~p~~kvllsi 96 (355)
-+.++++++.+|+. +.++++-+
T Consensus 82 i~~~k~l~davh~~--G~~i~~QL 103 (382)
T cd02931 82 IRTAKEMTERVHAY--GTKIFLQL 103 (382)
T ss_pred hHHHHHHHHHHHHc--CCEEEEEc
Confidence 35678888888877 78888887
No 83
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=69.19 E-value=25 Score=32.34 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=28.6
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCC
Q 040722 111 VRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAP 143 (355)
Q Consensus 111 ~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~ 143 (355)
+.||+.|+=+.+.+.+++.++|+||+=+|+-.|
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 568899988988888888899999999999655
No 84
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=68.08 E-value=48 Score=30.61 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcC-CCeEEEEeeCCCCC------
Q 040722 74 NQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYG-FQGLDFAWTAPNTS------ 146 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~-~DGididwe~~~~~------ 146 (355)
..+.+.+..+++..++..+++||-|.+. + .+. .+++.++..+ .|.|+|+.--|..+
T Consensus 77 ~~~~~~i~~~~~~~~~~pvI~Si~G~~~---~-------------~~~-~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g 139 (310)
T PRK02506 77 DYYLDYVLELQKKGPNKPHFLSVVGLSP---E-------------ETH-TILKKIQASDFNGLVELNLSCPNVPGKPQIA 139 (310)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEEeCcH---H-------------HHH-HHHHHHhhcCCCCEEEEECCCCCCCCccccc
Confidence 3344334445555557889999977532 2 222 2333455677 79999999877532
Q ss_pred cccchHHHHHHHHHHHHh
Q 040722 147 TDMFNVGLLFDEWRIAAT 164 (355)
Q Consensus 147 ~~~~~~~~~l~~l~~~~l 164 (355)
.|.+.+.++++.+|+ ..
T Consensus 140 ~d~~~~~~i~~~v~~-~~ 156 (310)
T PRK02506 140 YDFETTEQILEEVFT-YF 156 (310)
T ss_pred cCHHHHHHHHHHHHH-hc
Confidence 233445666777776 54
No 85
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=67.81 E-value=2.2 Score=31.95 Aligned_cols=12 Identities=25% Similarity=0.061 Sum_probs=7.8
Q ss_pred CchhHHHHHHHH
Q 040722 1 MASIIISIIFHT 12 (355)
Q Consensus 1 M~~~~~~~l~~~ 12 (355)
|++|+++||.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 898875555444
No 86
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=63.58 E-value=76 Score=29.04 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=37.2
Q ss_pred CCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHc--CCCeEEEEeeCCCCC------cccchHHHHHHHH
Q 040722 88 PSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLY--GFQGLDFAWTAPNTS------TDMFNVGLLFDEW 159 (355)
Q Consensus 88 p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~--~~DGididwe~~~~~------~~~~~~~~~l~~l 159 (355)
++..++++|+|. . +.+++.+..+.... +.|+|+|+.--|... .+.+.+.++++.+
T Consensus 90 ~~~pvivsi~g~-~----------------~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v 152 (294)
T cd04741 90 SAKPFFISVTGS-A----------------EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAV 152 (294)
T ss_pred cCCeEEEECCCC-H----------------HHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHH
Confidence 467899999873 2 34444443333333 689999999877641 2345566677777
Q ss_pred HHHHh
Q 040722 160 RIAAT 164 (355)
Q Consensus 160 ~~~~l 164 (355)
|+ ..
T Consensus 153 ~~-~~ 156 (294)
T cd04741 153 KA-AY 156 (294)
T ss_pred HH-hc
Confidence 76 54
No 87
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=62.95 E-value=37 Score=35.74 Aligned_cols=84 Identities=18% Similarity=0.142 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEee---------CCCC--Ccc-----cchHHHHHHHHHHHHhhHHHhhccCCCCcEEE
Q 040722 117 RKSFIDSSIRIARLYGFQGLDFAWT---------APNT--STD-----MFNVGLLFDEWRIAATKLEAKNSSRQQSQLIL 180 (355)
Q Consensus 117 r~~fi~~l~~~l~~~~~DGididwe---------~~~~--~~~-----~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~l 180 (355)
.+.|++.... +++-|||||+|+-- .|.. ..| -+|=..|+.|+-+ ++++.- +.++.|
T Consensus 550 i~~f~~aA~~-a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~-~ir~~~------~~~~~v 621 (765)
T PRK08255 550 RDDFVAAARR-AAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFR-AVRAVW------PAEKPM 621 (765)
T ss_pred HHHHHHHHHH-HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHH-HHHHhc------CCCCee
Confidence 4455555543 45579999999976 2332 111 1122344444443 333321 345788
Q ss_pred EEEecCCCCCC-ccc------h-hhhhcc-ccEEEee
Q 040722 181 TARFLYSPPAN-SYL------L-NSIQRN-LNWVHAV 208 (355)
Q Consensus 181 s~a~~~~~~~~-~~~------~-~~l~~~-vD~v~lm 208 (355)
++.+.+..+.. +.+ + +.+.+. +|+|+|-
T Consensus 622 ~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 622 SVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred EEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 88887643322 222 2 233333 7999885
No 88
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=61.39 E-value=19 Score=34.03 Aligned_cols=78 Identities=12% Similarity=0.225 Sum_probs=52.6
Q ss_pred HHHHHHHhhCCCcEEEEEE-------eCCCCCCCcchhhhhc-ChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC-Ccc
Q 040722 78 KFVDTVEKENPSITILLSI-------GQGMDTNYSIYSSMVR-NSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT-STD 148 (355)
Q Consensus 78 ~~~~~lk~~~p~~kvllsi-------Gg~~~~~~~~~~~~~~-~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~-~~~ 148 (355)
..+.+.+.. ++.|+-.| || +-+.+..||. +++-.=-+++.+++..+.|||||--|+=|-.+. +++
T Consensus 131 DVIDaaHrN--GVPvlGt~Ffppk~ygg----~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~ 204 (553)
T COG4724 131 DVIDAAHRN--GVPVLGTLFFPPKNYGG----DQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPL 204 (553)
T ss_pred hhhhhhhcC--CCceeeeeecChhhcCc----hHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcch
Confidence 344433333 88888666 33 2345666654 555556799999999999999999999774443 355
Q ss_pred cchHHHHHHHHHH
Q 040722 149 MFNVGLLFDEWRI 161 (355)
Q Consensus 149 ~~~~~~~l~~l~~ 161 (355)
..++..|+..+++
T Consensus 205 a~~M~~f~ly~ke 217 (553)
T COG4724 205 AEKMRQFMLYSKE 217 (553)
T ss_pred HHHHHHHHHHHHh
Confidence 5666677766664
No 89
>PLN02411 12-oxophytodienoate reductase
Probab=61.37 E-value=28 Score=33.31 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=25.9
Q ss_pred EEEeeEEEeCCCc----EEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEE
Q 040722 51 LICPSADINSTTY----QLSLSLPSDDNQIAKFVDTVEKENPSITILLSI 96 (355)
Q Consensus 51 ii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsi 96 (355)
||...+.+++++. .+.+.++..-+.++++++.+|++ +.|+++-|
T Consensus 60 IIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~avH~~--G~~i~~QL 107 (391)
T PLN02411 60 LISEGTLISPTAPGFPHVPGIYSDEQVEAWKKVVDAVHAK--GSIIFCQL 107 (391)
T ss_pred EEeCceEECcccCcCCCCCccCCHHHHHHHHHHHHHHHhc--CCEEEEec
Confidence 4555555665531 12222233345678888878777 78888777
No 90
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=61.30 E-value=69 Score=30.48 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEeCCC----CC-----CCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCC
Q 040722 74 NQIAKFVDTVEKENPSITILLSIGQGM----DT-----NYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPN 144 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiGg~~----~~-----~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~ 144 (355)
..-..|++++|++ ++..++.+...- .. +...-..-| .+...+.|+.=|++.++.+.=.||.|+.-.|.
T Consensus 104 ~gQrwfL~~Ak~r--GV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NL-k~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~ 180 (384)
T PF14587_consen 104 AGQRWFLKAAKER--GVNIFEAFSNSPPWWMTKNGSASGGDDGSDNL-KPDNYDAFADYLADVVKHYKKWGINFDYISPF 180 (384)
T ss_dssp HHHHHHHHHHHHT--T---EEEE-SSS-GGGSSSSSSB-S-SSS-SS--TT-HHHHHHHHHHHHHHHHCTT--EEEEE--
T ss_pred HHHHHHHHHHHHc--CCCeEEEeecCCCHHHhcCCCCCCCCcccccc-ChhHHHHHHHHHHHHHHHHHhcCCccceeCCc
Confidence 3344466777776 788888774310 00 000011122 35678889888888888887789999875444
Q ss_pred C--------------CcccchHHHHHHHHHHHHhhHH
Q 040722 145 T--------------STDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 145 ~--------------~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
. +-+.+....|++.|+. +|++.
T Consensus 181 NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~-~L~~~ 216 (384)
T PF14587_consen 181 NEPQWNWAGGSQEGCHFTNEEQADVIRALDK-ALKKR 216 (384)
T ss_dssp S-TTS-GG--SS-B----HHHHHHHHHHHHH-HHHHH
T ss_pred CCCCCCCCCCCcCCCCCCHHHHHHHHHHHHH-HHHhc
Confidence 2 1233456899999999 99987
No 91
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=61.26 E-value=1.1e+02 Score=26.66 Aligned_cols=46 Identities=7% Similarity=0.050 Sum_probs=26.9
Q ss_pred ceEEeeecceeeeeecCCCCCCCCCcccCCCCCCCcccchHHHHHH
Q 040722 255 KLVMGLPFYGYAWTLVKPEDNGIGAAATGPALHGNGLVTYKEIKNY 300 (355)
Q Consensus 255 Kl~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~ 300 (355)
-|.+++.-.|+.-++.++.-...-..+..+....+|.++..++.++
T Consensus 182 ~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~ 227 (228)
T TIGR01093 182 LITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLREL 227 (228)
T ss_pred EEEEeCCCCChhHhhccccccccceeccCCCCCCCCCcCHHHHHhh
Confidence 4667776677766665544333322232223356788988888764
No 92
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=61.19 E-value=92 Score=28.42 Aligned_cols=89 Identities=7% Similarity=0.032 Sum_probs=49.6
Q ss_pred CcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHc--CCCeEEEEeeCCCCC-------cccchHHHHHHHH
Q 040722 89 SITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLY--GFQGLDFAWTAPNTS-------TDMFNVGLLFDEW 159 (355)
Q Consensus 89 ~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~--~~DGididwe~~~~~-------~~~~~~~~~l~~l 159 (355)
+.+++++|.|.+ + +.+ ..+++.+.+. ++|+|||++--|... .+.+...++++++
T Consensus 90 ~~pl~~qi~g~~-------------~---~~~-~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~v 152 (300)
T TIGR01037 90 PTPLIASVYGSS-------------V---EEF-AEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAV 152 (300)
T ss_pred CCcEEEEeecCC-------------H---HHH-HHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHH
Confidence 467999997742 1 222 2344444543 389999998877642 2334455666666
Q ss_pred HHHHhhHHHhhccCCCCcEEEEEEecCCCCCCccchh-hhhc-cccEEEee
Q 040722 160 RIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLN-SIQR-NLNWVHAV 208 (355)
Q Consensus 160 ~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~-~l~~-~vD~v~lm 208 (355)
|+ ..+ +.|++-+.+... ...++. .+.+ -+|.+++.
T Consensus 153 r~-~~~------------~pv~vKi~~~~~-~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 153 KD-KTD------------VPVFAKLSPNVT-DITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HH-hcC------------CCEEEECCCChh-hHHHHHHHHHHcCCCEEEEE
Confidence 66 442 456666653221 111222 2322 38999875
No 93
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=60.21 E-value=1e+02 Score=28.67 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=34.6
Q ss_pred CcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCccc------chHHHHHHHHHHH
Q 040722 89 SITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDM------FNVGLLFDEWRIA 162 (355)
Q Consensus 89 ~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~------~~~~~~l~~l~~~ 162 (355)
+..++++|.|.. + +.| ..++..+++.|+|+|+|+.-.+..+.+. +.+.++++.+|+
T Consensus 99 ~~pvi~si~g~~-------------~---~~~-~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~- 160 (325)
T cd04739 99 SIPVIASLNGVS-------------A---GGW-VDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKS- 160 (325)
T ss_pred CCeEEEEeCCCC-------------H---HHH-HHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHh-
Confidence 678999997632 1 223 2444455677899999999754321111 234456666666
Q ss_pred Hh
Q 040722 163 AT 164 (355)
Q Consensus 163 ~l 164 (355)
..
T Consensus 161 ~~ 162 (325)
T cd04739 161 AV 162 (325)
T ss_pred cc
Confidence 44
No 94
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=60.16 E-value=48 Score=31.04 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=25.9
Q ss_pred EEEeeEEEeCCCc----EEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEE
Q 040722 51 LICPSADINSTTY----QLSLSLPSDDNQIAKFVDTVEKENPSITILLSI 96 (355)
Q Consensus 51 ii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsi 96 (355)
||...+.+.+.+. .+.+..+..-+.++++.+.+|+. +.|+++-+
T Consensus 50 Ii~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~la~~vh~~--ga~~~~QL 97 (338)
T cd02933 50 IITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTDAVHAK--GGKIFLQL 97 (338)
T ss_pred EEeCceeeCccccCCCCCCccCCHHHHHHHHHHHHHHHhc--CCeEEEEc
Confidence 4555566666541 12222123345678888777777 78888777
No 95
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=59.89 E-value=32 Score=32.16 Aligned_cols=41 Identities=12% Similarity=0.371 Sum_probs=28.8
Q ss_pred CCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCC
Q 040722 87 NPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPN 144 (355)
Q Consensus 87 ~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~ 144 (355)
....++.+.|+|.+ + +.|++ .+..+++.|+|||||+.--|.
T Consensus 62 ~~e~p~~vQl~g~~-------------p---~~~~~-aA~~~~~~g~d~IdlN~gCP~ 102 (333)
T PRK11815 62 PEEHPVALQLGGSD-------------P---ADLAE-AAKLAEDWGYDEINLNVGCPS 102 (333)
T ss_pred CCCCcEEEEEeCCC-------------H---HHHHH-HHHHHHhcCCCEEEEcCCCCH
Confidence 34567889998853 2 33443 345667789999999987665
No 96
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=59.83 E-value=50 Score=30.64 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=38.3
Q ss_pred hCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCC-----------cccchHHH
Q 040722 86 ENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS-----------TDMFNVGL 154 (355)
Q Consensus 86 ~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~-----------~~~~~~~~ 154 (355)
......+++.|+|.+ + +.|+ .....+..+|+|+|||+.--|... .+.+...+
T Consensus 51 ~~~e~p~~vQl~g~~-------------p---~~~~-~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~ 113 (318)
T TIGR00742 51 SPEESPVALQLGGSD-------------P---NDLA-KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVAD 113 (318)
T ss_pred CCCCCcEEEEEccCC-------------H---HHHH-HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHH
Confidence 334567888888853 2 2333 344556678999999999776531 23334456
Q ss_pred HHHHHHHHHh
Q 040722 155 LFDEWRIAAT 164 (355)
Q Consensus 155 ~l~~l~~~~l 164 (355)
+++++++ ++
T Consensus 114 iv~av~~-~~ 122 (318)
T TIGR00742 114 CVKAMQE-AV 122 (318)
T ss_pred HHHHHHH-Hh
Confidence 6677776 55
No 97
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=59.08 E-value=1.5e+02 Score=27.25 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcC-CCeEEEEeeCCCCC-cccchHH
Q 040722 76 IAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYG-FQGLDFAWTAPNTS-TDMFNVG 153 (355)
Q Consensus 76 ~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~-~DGididwe~~~~~-~~~~~~~ 153 (355)
...+++.+++. +..++..+-.+.. +.. .-+.+.-+.+.+.+++-|+..+ +|||-|+.=..... ...+.=.
T Consensus 47 ~~g~~~~a~~~--g~e~vp~~~a~A~--P~G----~v~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~EG 118 (292)
T PF07364_consen 47 IGGFLDAAEAQ--GWEVVPLLWAAAE--PGG----PVTREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGEG 118 (292)
T ss_dssp HHHHHHHHHHT--T-EEEEEEEEEE---SEE-----B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHHH
T ss_pred hHHHHHHHHHC--CCEEEeeEeeeec--CCC----cccHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCchH
Confidence 45566666665 7788877743322 111 1245566788889999999986 99999998544321 2222346
Q ss_pred HHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCCccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCCCCCCC
Q 040722 154 LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSG 233 (355)
Q Consensus 154 ~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~~~~~~ 233 (355)
.|++++|+ .+. +...|.+++-...+ --+.+.+.+|.+.. |. +.||.-.+
T Consensus 119 ~Ll~rvR~-~vG----------p~vpI~~tlDlHaN----vs~~mv~~ad~~~~--yr---------tyPH~D~~----- 167 (292)
T PF07364_consen 119 DLLRRVRA-IVG----------PDVPIAATLDLHAN----VSPRMVEAADIIVG--YR---------TYPHIDMY----- 167 (292)
T ss_dssp HHHHHHHH-HHT----------TTSEEEEEE-TT--------HHHHHH-SEEEE--------------SS---HH-----
T ss_pred HHHHHHHH-HhC----------CCCeEEEEeCCCCC----ccHHHHHhCCEEEE--cC---------CCCccCHH-----
Confidence 79999999 883 44555555543322 23567788887643 32 22333321
Q ss_pred CCcccHHHHHHHHH---HCCCCCCceEEeeecce
Q 040722 234 GFARSTDQVLKAWI---ERGLSADKLVMGLPFYG 264 (355)
Q Consensus 234 ~~~~~~~~~v~~~~---~~g~~~~Kl~lglp~yG 264 (355)
..-+.+++.+. +.++.|.+-..-+|+-.
T Consensus 168 ---etg~~aa~ll~~~l~g~~rp~~a~~~~P~l~ 198 (292)
T PF07364_consen 168 ---ETGERAARLLLRALRGEIRPVMALRRLPMLL 198 (292)
T ss_dssp ---HHHHHHHHHHHHTTT-SS--EEEEEEE-B--
T ss_pred ---HHHHHHHHHHHHHHcCCCCceEEEecCCeEc
Confidence 23344444443 34556667776666643
No 98
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=58.27 E-value=44 Score=30.01 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCC
Q 040722 74 NQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPN 144 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~ 144 (355)
+....+++.||++ ++|+++.+-- . .|+=+.+.+.+++.+.|+||+=+|+-.|.
T Consensus 66 pdp~~~i~~l~~~--g~~~~~~~~P------~----------v~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 66 PNPKSMIDELHDN--GVKLVLWIDP------Y----------IREWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred CCHHHHHHHHHHC--CCEEEEEeCh------h----------HHHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 4467788888886 8999998632 1 16777777777778899999999986554
No 99
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=56.70 E-value=41 Score=24.67 Aligned_cols=60 Identities=7% Similarity=-0.039 Sum_probs=45.9
Q ss_pred cchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC---------CcccchHHHHHHHHHHHHhh
Q 040722 105 SIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT---------STDMFNVGLLFDEWRIAATK 165 (355)
Q Consensus 105 ~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~---------~~~~~~~~~~l~~l~~~~l~ 165 (355)
+............++....+.+.+++++++=--+|-|+... .+.+-+|-.|+++|.. .|+
T Consensus 12 eD~~~~~~~~~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~-~f~ 80 (88)
T PF04468_consen 12 EDIERLERLREREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAR-EFK 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHH-HhC
Confidence 34445555555567777888889999999887888887653 4778899999999999 885
No 100
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=56.53 E-value=52 Score=28.33 Aligned_cols=64 Identities=11% Similarity=-0.003 Sum_probs=40.4
Q ss_pred HHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCCccchhhhhccccEE
Q 040722 126 RIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLNSIQRNLNWV 205 (355)
Q Consensus 126 ~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v 205 (355)
+.+.+.|.|-|-+++|.. .....+++.+|+ . + ....+++.|..... .+..+.+.+|+|
T Consensus 74 ~~~~~~g~~~i~~H~E~~------~~~~~~i~~ik~-~-----------g--~k~GialnP~T~~~--~~~~~l~~vD~V 131 (201)
T PF00834_consen 74 EEFAEAGADYITFHAEAT------EDPKETIKYIKE-A-----------G--IKAGIALNPETPVE--ELEPYLDQVDMV 131 (201)
T ss_dssp HHHHHHT-SEEEEEGGGT------TTHHHHHHHHHH-T-----------T--SEEEEEE-TTS-GG--GGTTTGCCSSEE
T ss_pred HHHHhcCCCEEEEcccch------hCHHHHHHHHHH-h-----------C--CCEEEEEECCCCch--HHHHHhhhcCEE
Confidence 334566999999999822 245567777776 2 1 45667776544332 245567789999
Q ss_pred Eeeecc
Q 040722 206 HAVTAS 211 (355)
Q Consensus 206 ~lm~yd 211 (355)
.+|+-+
T Consensus 132 lvMsV~ 137 (201)
T PF00834_consen 132 LVMSVE 137 (201)
T ss_dssp EEESS-
T ss_pred EEEEec
Confidence 999965
No 101
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=54.48 E-value=1.8e+02 Score=26.97 Aligned_cols=102 Identities=10% Similarity=0.005 Sum_probs=54.9
Q ss_pred CCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC-----CcccchHHHHHHHHHHH
Q 040722 88 PSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT-----STDMFNVGLLFDEWRIA 162 (355)
Q Consensus 88 p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~-----~~~~~~~~~~l~~l~~~ 162 (355)
.+..+++||+|... . . -++.-+.|++.+-.+ .. ..|+|+|++--|.. .++.+.+.++++.+|+
T Consensus 127 ~~~plivsi~g~~~--~-~------~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~- 194 (327)
T cd04738 127 RGGPLGVNIGKNKD--T-P------LEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKE- 194 (327)
T ss_pred CCCeEEEEEeCCCC--C-c------ccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHH-
Confidence 47889999998642 1 0 112223444443333 23 38999999976653 1344567788888888
Q ss_pred HhhHHHhhccCCCCcEEEEEEecCCCCCC-ccch-hhhhc-cccEEEee
Q 040722 163 ATKLEAKNSSRQQSQLILTARFLYSPPAN-SYLL-NSIQR-NLNWVHAV 208 (355)
Q Consensus 163 ~l~~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~~-~~l~~-~vD~v~lm 208 (355)
..... ++++-+.+-+++..... -..+ +.+.+ -+|+|.+.
T Consensus 195 ~~~~~-------~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~ 236 (327)
T cd04738 195 ERNKL-------GKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIAT 236 (327)
T ss_pred HHhhc-------ccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 66421 12244666665432211 1111 22222 47888765
No 102
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=53.99 E-value=21 Score=26.01 Aligned_cols=73 Identities=16% Similarity=0.099 Sum_probs=38.8
Q ss_pred HHHHcCCCeEEEEeeCCCC-Cc-------------ccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCCc
Q 040722 127 IARLYGFQGLDFAWTAPNT-ST-------------DMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANS 192 (355)
Q Consensus 127 ~l~~~~~DGididwe~~~~-~~-------------~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~ 192 (355)
++.+++.|.--+-||--++ +. ..+.+..+++++.+ .+++. .+...||+...... .
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~iR~~-------dP~~pvt~g~~~~~---~ 69 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFR-WIRAV-------DPSQPVTSGFWGGD---W 69 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHH-HHHTT--------TTS-EE--B--S----T
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHH-HHHHh-------CCCCcEEeecccCC---H
Confidence 3667788888888873332 11 23567788888888 88766 45566776653321 1
Q ss_pred cchhhhh-ccccEEEeeec
Q 040722 193 YLLNSIQ-RNLNWVHAVTA 210 (355)
Q Consensus 193 ~~~~~l~-~~vD~v~lm~y 210 (355)
-.+..+. ..+|++.+..|
T Consensus 70 ~~~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 EDLEQLQAENLDVISFHPY 88 (88)
T ss_dssp THHHHS--TT-SSEEB-EE
T ss_pred HHHHHhchhcCCEEeeecC
Confidence 2245555 78888877655
No 103
>PRK09936 hypothetical protein; Provisional
Probab=53.89 E-value=1.8e+02 Score=26.63 Aligned_cols=147 Identities=7% Similarity=0.113 Sum_probs=75.9
Q ss_pred CCCcEEEEeeEEEeCCCcEEeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHH--
Q 040722 46 DLFTHLICPSADINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDS-- 123 (355)
Q Consensus 46 ~~~thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~-- 123 (355)
..|.++|+=|...... .+. .. +.-..+.....++. ++||.+.+= . |++.|..+..|++..+.+.+.
T Consensus 50 ~G~~tLivQWt~yG~~----~fg-~~-~g~La~~l~~A~~~--Gl~v~vGL~---~-Dp~y~q~~~~d~~~~~~yl~~~l 117 (296)
T PRK09936 50 QGFDTLVVQWTRYGDA----DFG-GQ-RGWLAKRLAAAQQA--GLKLVVGLY---A-DPEFFMHQKQDGAALESYLNRQL 117 (296)
T ss_pred cCCcEEEEEeeeccCC----Ccc-cc-hHHHHHHHHHHHHc--CCEEEEccc---C-ChHHHHHHhcCchhHHHHHHHHH
Confidence 4599999988766221 222 12 33334444455555 899987653 2 578888886676666655443
Q ss_pred ------HHHHHHHcCC--CeEEEEeeCCC-C---CcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCC
Q 040722 124 ------SIRIARLYGF--QGLDFAWTAPN-T---STDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN 191 (355)
Q Consensus 124 ------l~~~l~~~~~--DGididwe~~~-~---~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~ 191 (355)
...+-...++ +|--|=-|--. . +..+..+...++.+.. .++.. ++++.||+-......-.
T Consensus 118 ~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~-~l~~~-------~kPv~ISay~~g~~sP~ 189 (296)
T PRK09936 118 GASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQR-LIDVS-------AKPVHISAFFAGNMSPD 189 (296)
T ss_pred HHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHH-hCCCC-------CCCeEEEeecccCCChH
Confidence 2334444555 88877666221 1 1223334444444444 44311 24566666554322111
Q ss_pred --ccchhhhhccccEEEeeecccCC
Q 040722 192 --SYLLNSIQRNLNWVHAVTASYYE 214 (355)
Q Consensus 192 --~~~~~~l~~~vD~v~lm~yd~~~ 214 (355)
..=+..+.. ++ +.||-=|-.|
T Consensus 190 ~l~~Wl~~l~~-~~-l~V~~QDGvG 212 (296)
T PRK09936 190 GYRQWLEQLKA-TG-VNVWVQDGSG 212 (296)
T ss_pred HHHHHHHHHhh-cC-CeEEEEcCCC
Confidence 222344443 23 4667666544
No 104
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=53.15 E-value=75 Score=29.43 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=29.3
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCC
Q 040722 111 VRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPN 144 (355)
Q Consensus 111 ~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~ 144 (355)
+.||+.|+=+.+.+..++.+.|+||+=+|+-.|.
T Consensus 129 ftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 129 FTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred CCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCc
Confidence 4689999999888888888999999999986554
No 105
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=53.08 E-value=77 Score=29.68 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=28.6
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCC
Q 040722 111 VRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPN 144 (355)
Q Consensus 111 ~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~ 144 (355)
++|++.|+=+.+.+.+++.+.|+||+=+|+..|.
T Consensus 134 ftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 134 FLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCc
Confidence 5688888888888888888899999999986554
No 106
>PRK03995 hypothetical protein; Provisional
Probab=52.27 E-value=33 Score=30.92 Aligned_cols=69 Identities=10% Similarity=0.134 Sum_probs=42.3
Q ss_pred CCcEEEEEEeCCCCCCCcchhhhhcC-----------hhhHHHHHHHHHHHHHHc--CCCeEEEEeeCCCCCcccchHHH
Q 040722 88 PSITILLSIGQGMDTNYSIYSSMVRN-----------SSHRKSFIDSSIRIARLY--GFQGLDFAWTAPNTSTDMFNVGL 154 (355)
Q Consensus 88 p~~kvllsiGg~~~~~~~~~~~~~~~-----------~~~r~~fi~~l~~~l~~~--~~DGididwe~~~~~~~~~~~~~ 154 (355)
...++++.|||... ...|.+++.. -..-.---+.+.+.+.+. ++|.+.|||....+ .++..+..
T Consensus 179 ~~~~~~iGiGGgHY--apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~~k~-~~r~~i~~ 255 (267)
T PRK03995 179 EKFKPAIGIGGGHY--APKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKGVKS-EDRERIIE 255 (267)
T ss_pred cCCCEEEEECCCCc--cHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCCCCH-HHHHHHHH
Confidence 57899999999765 4444443321 110000011244555554 68999999987766 77777777
Q ss_pred HHHHH
Q 040722 155 LFDEW 159 (355)
Q Consensus 155 ~l~~l 159 (355)
+++++
T Consensus 256 ~le~~ 260 (267)
T PRK03995 256 FLEEL 260 (267)
T ss_pred HHHHC
Confidence 77665
No 107
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=51.63 E-value=35 Score=26.61 Aligned_cols=45 Identities=7% Similarity=-0.059 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHH
Q 040722 121 IDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 121 i~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
.+.+.++|++.|++.--+++++... .+.+.|+..++++-+ .+.+.
T Consensus 80 ~~~lke~l~elgie~eRv~~~wiSa-~E~ekf~e~~~efv~-~i~~l 124 (132)
T COG1908 80 MELLKELLKELGIEPERVRVLWISA-AEGEKFAETINEFVE-RIKEL 124 (132)
T ss_pred HHHHHHHHHHhCCCcceEEEEEEeh-hhHHHHHHHHHHHHH-HHHHh
Confidence 4567788899999988888888776 788889999999888 88766
No 108
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=51.01 E-value=79 Score=30.37 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=60.8
Q ss_pred CChhHHHHHHHHHHhhCCCcEEEEEEeCCCC-CCCcch----------------------hhhhcChhhHHHHHHHHHHH
Q 040722 71 SDDNQIAKFVDTVEKENPSITILLSIGQGMD-TNYSIY----------------------SSMVRNSSHRKSFIDSSIRI 127 (355)
Q Consensus 71 ~~~~~~~~~~~~lk~~~p~~kvllsiGg~~~-~~~~~~----------------------~~~~~~~~~r~~fi~~l~~~ 127 (355)
..+..++.+++.++++ ++|.-|-+.-... .++..+ .-=+++|+.|+-+.+.+.++
T Consensus 101 kFP~Gl~~l~~~i~~~--Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~l 178 (394)
T PF02065_consen 101 KFPNGLKPLADYIHSL--GMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRL 178 (394)
T ss_dssp TSTTHHHHHHHHHHHT--T-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHH
T ss_pred hhCCcHHHHHHHHHHC--CCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHH
Confidence 3556788999888887 8888777632100 011111 01146788899999999999
Q ss_pred HHHcCCCeEEEEeeCCCC----Cc---ccchHH----HHHHHHHHHHhhHHHhhccCCCCcEEEEEEecC
Q 040722 128 ARLYGFQGLDFAWTAPNT----ST---DMFNVG----LLFDEWRIAATKLEAKNSSRQQSQLILTARFLY 186 (355)
Q Consensus 128 l~~~~~DGididwe~~~~----~~---~~~~~~----~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~ 186 (355)
++++|+|.|-+|+..... +. ....++ .++++||+ ++ +++.+......
T Consensus 179 l~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~-~~-----------P~v~iE~CssG 236 (394)
T PF02065_consen 179 LREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRA-RF-----------PDVLIENCSSG 236 (394)
T ss_dssp HHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHH-HT-----------TTSEEEE-BTT
T ss_pred HHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHH-hC-----------CCcEEEeccCC
Confidence 999999999999975432 11 112333 46666666 55 44677666543
No 109
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=50.83 E-value=1.8e+02 Score=25.80 Aligned_cols=74 Identities=8% Similarity=0.134 Sum_probs=38.3
Q ss_pred HHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcC-CCeEEEEeeCCCCCcccchHHHH
Q 040722 77 AKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYG-FQGLDFAWTAPNTSTDMFNVGLL 155 (355)
Q Consensus 77 ~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~-~DGididwe~~~~~~~~~~~~~~ 155 (355)
....+.+|+..|++|+++. +.+. .....+++++.+-+..+.+... +|||-+-+-......+...+.++
T Consensus 106 ~~af~~ar~~~P~a~l~~N--dy~~---------~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~ 174 (254)
T smart00633 106 EKAFRYAREADPDAKLFYN--DYNT---------EEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAA 174 (254)
T ss_pred HHHHHHHHHhCCCCEEEEe--ccCC---------cCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHH
Confidence 3444578888999999875 3221 1111445444444444444333 79998865322111122345555
Q ss_pred HHHHHH
Q 040722 156 FDEWRI 161 (355)
Q Consensus 156 l~~l~~ 161 (355)
|+++.+
T Consensus 175 l~~~~~ 180 (254)
T smart00633 175 LDRFAS 180 (254)
T ss_pred HHHHHH
Confidence 555543
No 110
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=50.60 E-value=1.4e+02 Score=28.08 Aligned_cols=103 Identities=12% Similarity=0.036 Sum_probs=56.8
Q ss_pred CCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC-----CcccchHHHHHHHHHHH
Q 040722 88 PSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT-----STDMFNVGLLFDEWRIA 162 (355)
Q Consensus 88 p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~-----~~~~~~~~~~l~~l~~~ 162 (355)
.++.+++||+|... ......-+.|++.+..+ .. +.|+++|++--|.. .++...+.++++++|+
T Consensus 136 ~~~pvivsI~~~~~---------~~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~- 203 (344)
T PRK05286 136 RGIPLGINIGKNKD---------TPLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKE- 203 (344)
T ss_pred CCCcEEEEEecCCC---------CCcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHH-
Confidence 57889999998532 00112334555444443 33 48999999977754 2344567778888888
Q ss_pred HhhHHHhhccCCCCcEEEEEEecCCCCCC-ccch-hhhhc-cccEEEeee
Q 040722 163 ATKLEAKNSSRQQSQLILTARFLYSPPAN-SYLL-NSIQR-NLNWVHAVT 209 (355)
Q Consensus 163 ~l~~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~~-~~l~~-~vD~v~lm~ 209 (355)
..... ..++-|.+-+++..... -.++ +.+.+ -+|.|.+..
T Consensus 204 ~~~~~-------~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 204 AQAEL-------HGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred HHhcc-------ccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 66421 00144666666432211 1112 22222 489988764
No 111
>PRK09505 malS alpha-amylase; Reviewed
Probab=50.47 E-value=33 Score=35.48 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=25.4
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeEEEEe
Q 040722 112 RNSSHRKSFIDSSIRIARLYGFQGLDFAW 140 (355)
Q Consensus 112 ~~~~~r~~fi~~l~~~l~~~~~DGididw 140 (355)
.|++-|+.+++.+..|++++|+||+-||-
T Consensus 434 ~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDa 462 (683)
T PRK09505 434 DGYTPRDYLTHWLSQWVRDYGIDGFRVDT 462 (683)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 35678888999999999999999999995
No 112
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=49.67 E-value=90 Score=34.81 Aligned_cols=88 Identities=14% Similarity=0.171 Sum_probs=53.4
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCC--------------CCCcc--------------hh-----hhhcChhhHH
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMD--------------TNYSI--------------YS-----SMVRNSSHRK 118 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~--------------~~~~~--------------~~-----~~~~~~~~r~ 118 (355)
....|+.++++++++ +++|++-+--... .+... +. --+.++.-|+
T Consensus 245 ~~~efk~lV~~~H~~--GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~ 322 (1221)
T PRK14510 245 GEEEFAQAIKEAQSA--GIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILR 322 (1221)
T ss_pred cHHHHHHHHHHHHHC--CCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHH
Confidence 345689999988888 8999988621000 00000 00 1123567777
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHH
Q 040722 119 SFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 119 ~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
-.++++.-|++ +++||.-||--......+ ..|+++++. .+++.
T Consensus 323 ~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~----~~f~~~~~~-~l~ai 365 (1221)
T PRK14510 323 LPMDVLRSWAK-RGVDGFRLDLADELAREP----DGFIDEFRQ-FLKAM 365 (1221)
T ss_pred HHHHHHHHHHH-hCCCEEEEechhhhccCc----cchHHHHHH-HHHHh
Confidence 78888888999 999999999753331111 235555555 55443
No 113
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.05 E-value=64 Score=29.86 Aligned_cols=68 Identities=15% Similarity=0.077 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcch-----------------------------hhhhcChhhHHHHHHHH
Q 040722 74 NQIAKFVDTVEKENPSITILLSIGQGMDTNYSIY-----------------------------SSMVRNSSHRKSFIDSS 124 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~-----------------------------~~~~~~~~~r~~fi~~l 124 (355)
+....+++.||++ ++|+++.|--.-..++..| --=+.|++.|+=+.+.+
T Consensus 73 Pdp~~mi~~L~~~--g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 150 (317)
T cd06599 73 PDPAAFVAKFHER--GIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGV 150 (317)
T ss_pred CCHHHHHHHHHHC--CCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHH
Confidence 3466788888887 7999986621110000000 01135889998888888
Q ss_pred HHHHHHcCCCeEEEEeeCC
Q 040722 125 IRIARLYGFQGLDFAWTAP 143 (355)
Q Consensus 125 ~~~l~~~~~DGididwe~~ 143 (355)
.+.+...|+||+=+|...+
T Consensus 151 ~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 151 KEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred HHHHhcCCCcEEEecCCCC
Confidence 8889999999999998544
No 114
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=48.87 E-value=78 Score=25.16 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhh-cChhhHHHHHHHHHHHHHHcCCCeEEE
Q 040722 74 NQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMV-RNSSHRKSFIDSSIRIARLYGFQGLDF 138 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~-~~~~~r~~fi~~l~~~l~~~~~DGidi 138 (355)
..+.-+++.+++. ++++++-|--- ...|..-. -+.+.|+.+.+.|...++++||.=+|+
T Consensus 36 ~Dl~l~L~~~k~~--g~~~lfVi~Pv----Ng~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 36 DDLQLLLDVCKEL--GIDVLFVIQPV----NGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEE--------HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHHHHHHc--CCceEEEecCC----cHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 4566777788887 78888776432 22333333 378999999999999999999955554
No 115
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=48.04 E-value=12 Score=18.54 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=7.7
Q ss_pred CchhHHHHHHHHHHHh
Q 040722 1 MASIIISIIFHTLLYS 16 (355)
Q Consensus 1 M~~~~~~~l~~~~~~~ 16 (355)
|++..++++.+++++|
T Consensus 1 MMk~vIIlvvLLliSf 16 (19)
T PF13956_consen 1 MMKLVIILVVLLLISF 16 (19)
T ss_pred CceehHHHHHHHhccc
Confidence 5555544444445444
No 116
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=47.83 E-value=64 Score=29.18 Aligned_cols=81 Identities=10% Similarity=-0.027 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeeCCC----------CCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCC
Q 040722 119 SFIDSSIRIARLYGFQGLDFAWTAPN----------TSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSP 188 (355)
Q Consensus 119 ~fi~~l~~~l~~~~~DGididwe~~~----------~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~ 188 (355)
..+.+-.+-|...|||||-||+--+- ..........|+.++++ ..+.. ++. +.+-+....
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~-~~ra~-------~~~--~~Vi~qng~ 195 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAE-YARAA-------NPL--FRVIPQNGA 195 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHH-HHHhc-------CCc--EEEEecccH
Confidence 44556666777789999999974222 12334567788888888 77654 333 434433333
Q ss_pred CCCccchhhhhccccE-EEeee
Q 040722 189 PANSYLLNSIQRNLNW-VHAVT 209 (355)
Q Consensus 189 ~~~~~~~~~l~~~vD~-v~lm~ 209 (355)
.....+...+....++ +.+.+
T Consensus 196 ~l~d~~~a~l~~~~~~~~~vE~ 217 (300)
T COG2342 196 ELFDADGAGLLPRLGFGVAVET 217 (300)
T ss_pred hhcCccccchhhccccceEEEE
Confidence 3324444445444444 44444
No 117
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=47.36 E-value=1.1e+02 Score=29.06 Aligned_cols=115 Identities=9% Similarity=0.054 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEeCCCCC--------CC-----cchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEE
Q 040722 73 DNQIAKFVDTVEKENPSITILLSIGQGMDT--------NY-----SIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFA 139 (355)
Q Consensus 73 ~~~~~~~~~~lk~~~p~~kvllsiGg~~~~--------~~-----~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGidid 139 (355)
+..-..+++.+|+++|++++ ..+||.... +. -.|...+..--.-.+..+.+++.+++..-|-+-+
T Consensus 11 D~~ga~Li~~Lk~~~p~~~~-~GvGG~~M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIl- 88 (373)
T PF02684_consen 11 DLHGARLIRALKARDPDIEF-YGVGGPRMQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVIL- 88 (373)
T ss_pred HHHHHHHHHHHHhhCCCcEE-EEEechHHHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE-
Confidence 33456788899999999885 577875320 00 1233445444555677888999999999997655
Q ss_pred eeCCCCCcccchH-HHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCC-ccchhhhhccccEEEee
Q 040722 140 WTAPNTSTDMFNV-GLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN-SYLLNSIQRNLNWVHAV 208 (355)
Q Consensus 140 we~~~~~~~~~~~-~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~~~~l~~~vD~v~lm 208 (355)
..+| .| ..+.+.+|+ .- .+..+---++|.-|.. ..-.+.+.+++|.+.+.
T Consensus 89 ID~p-------gFNlrlak~lk~-~~-----------~~~~viyYI~PqvWAWr~~R~~~i~~~~D~ll~i 140 (373)
T PF02684_consen 89 IDYP-------GFNLRLAKKLKK-RG-----------IPIKVIYYISPQVWAWRPGRAKKIKKYVDHLLVI 140 (373)
T ss_pred eCCC-------CccHHHHHHHHH-hC-----------CCceEEEEECCceeeeCccHHHHHHHHHhheeEC
Confidence 2333 23 346666766 32 2222334445444433 44577889999997554
No 118
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=47.07 E-value=11 Score=28.99 Aligned_cols=18 Identities=22% Similarity=0.641 Sum_probs=13.8
Q ss_pred HHHHHHCCCCCCceEEee
Q 040722 243 LKAWIERGLSADKLVMGL 260 (355)
Q Consensus 243 v~~~~~~g~~~~Kl~lgl 260 (355)
.+.++.+|+|++.||||+
T Consensus 80 a~eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 80 AEELVEAGVPKEDIVLGF 97 (111)
T ss_dssp HHHHHHTT--GGGEEETT
T ss_pred HHHHHHcCCCHHHEEEcc
Confidence 456788999999999997
No 119
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=46.97 E-value=45 Score=33.48 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhcc
Q 040722 122 DSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSS 172 (355)
Q Consensus 122 ~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g 172 (355)
+|+++++.+.|+|=.-|||..|......-.+.+.++.+.+ +++.....+|
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~-Ald~V~~~tG 286 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKE-AVDAVRAITG 286 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHH-HHHHHHHhcC
Confidence 6899999999999999999999873322356666667777 7777766666
No 120
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=46.59 E-value=1.1e+02 Score=25.78 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=36.0
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhh-hhcChhhHHHHHHHHHHHHHHcCCCeEEE
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSS-MVRNSSHRKSFIDSSIRIARLYGFQGLDF 138 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~-~~~~~~~r~~fi~~l~~~l~~~~~DGidi 138 (355)
-......|++.+++++|+..|++.=--... ...+.. .-...+...+.++.+++-+++.|...|.+
T Consensus 76 ~~~~~~~fv~~iR~~hP~tPIllv~~~~~~--~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~ 141 (178)
T PF14606_consen 76 FRERLDGFVKTIREAHPDTPILLVSPIPYP--AGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYY 141 (178)
T ss_dssp HHHHHHHHHHHHHTT-SSS-EEEEE----T--TTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCcc--ccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 456678899999999999998865321111 112221 12233445566777777787777766654
No 121
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=46.08 E-value=36 Score=28.09 Aligned_cols=24 Identities=33% Similarity=0.822 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHCCCCCCce-EEeee
Q 040722 238 STDQVLKAWIERGLSADKL-VMGLP 261 (355)
Q Consensus 238 ~~~~~v~~~~~~g~~~~Kl-~lglp 261 (355)
..+.+.+.+++.|+|++|| +.|+|
T Consensus 144 ase~~~~~l~~~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 144 ASEEVKEELIERGIPPERIHVTGIP 168 (169)
T ss_pred CCHHHHHHHHHcCCChhHEEEeCcc
Confidence 3456677788899999998 45665
No 122
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.99 E-value=93 Score=28.78 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=23.9
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeEEEEeeCC
Q 040722 112 RNSSHRKSFIDSSIRIARLYGFQGLDFAWTAP 143 (355)
Q Consensus 112 ~~~~~r~~fi~~l~~~l~~~~~DGididwe~~ 143 (355)
.||+.|+=|.+.+.+ +.+.|+||+=+|+..|
T Consensus 135 tnp~a~~w~~~~~~~-~~~~Gvdg~w~D~~Ep 165 (317)
T cd06598 135 FDPAAQAWFHDNYKK-LIDQGVTGWWGDLGEP 165 (317)
T ss_pred CCHHHHHHHHHHHHH-hhhCCccEEEecCCCc
Confidence 488888777666655 4788999999999544
No 123
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=45.87 E-value=2.5e+02 Score=25.93 Aligned_cols=90 Identities=9% Similarity=0.060 Sum_probs=43.5
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeC---CCCC----CCcchhhhhcCh--hhHHHHHHHHHHHHHHcCCCeEEEEeeC
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQ---GMDT----NYSIYSSMVRNS--SHRKSFIDSSIRIARLYGFQGLDFAWTA 142 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg---~~~~----~~~~~~~~~~~~--~~r~~fi~~l~~~l~~~~~DGididwe~ 142 (355)
|-.....+.+ |+++.++|||+-+-- |.+. .+..|..+--+. ...-.+.+.+++.+++ .||++||-+
T Consensus 102 D~~k~ieiak--RAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~---eGi~pdmVQ 176 (403)
T COG3867 102 DLKKAIEIAK--RAKNLGMKVLLDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK---EGILPDMVQ 176 (403)
T ss_pred hHHHHHHHHH--HHHhcCcEEEeeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH---cCCCccceE
Confidence 3344444544 455669999998742 1110 011222221111 1112344555555555 568888876
Q ss_pred CCC---------CcccchHHHHHHHHHHHHhhHH
Q 040722 143 PNT---------STDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 143 ~~~---------~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
.+. ..+..+|..+-+-|.+ ..+..
T Consensus 177 VGNEtn~gflwp~Ge~~~f~k~a~L~n~-g~~av 209 (403)
T COG3867 177 VGNETNGGFLWPDGEGRNFDKMAALLNA-GIRAV 209 (403)
T ss_pred eccccCCceeccCCCCcChHHHHHHHHH-Hhhhh
Confidence 553 1223366665555555 44443
No 124
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=45.44 E-value=1e+02 Score=27.15 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=48.9
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCC
Q 040722 108 SSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYS 187 (355)
Q Consensus 108 ~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~ 187 (355)
+-|+.+| .++++ .+.+.|.|-|-|+.|.. .....+++.+|+ . +.+....+++.|.
T Consensus 74 HLMv~~P---~~~i~----~~~~aGad~It~H~Ea~------~~~~~~l~~Ik~-~-----------g~~~kaGlalnP~ 128 (228)
T PRK08091 74 HLMVRDQ---FEVAK----ACVAAGADIVTLQVEQT------HDLALTIEWLAK-Q-----------KTTVLIGLCLCPE 128 (228)
T ss_pred EeccCCH---HHHHH----HHHHhCCCEEEEcccCc------ccHHHHHHHHHH-C-----------CCCceEEEEECCC
Confidence 4455555 34443 34456999999999942 235667777776 2 2223667777655
Q ss_pred CCCCccchhhhhccccEEEeeecc
Q 040722 188 PPANSYLLNSIQRNLNWVHAVTAS 211 (355)
Q Consensus 188 ~~~~~~~~~~l~~~vD~v~lm~yd 211 (355)
.... .+..+.+.+|+|.+||-+
T Consensus 129 Tp~~--~i~~~l~~vD~VLiMtV~ 150 (228)
T PRK08091 129 TPIS--LLEPYLDQIDLIQILTLD 150 (228)
T ss_pred CCHH--HHHHHHhhcCEEEEEEEC
Confidence 4332 345567789999999975
No 125
>PRK08005 epimerase; Validated
Probab=45.20 E-value=96 Score=26.90 Aligned_cols=75 Identities=9% Similarity=-0.020 Sum_probs=47.6
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCC
Q 040722 108 SSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYS 187 (355)
Q Consensus 108 ~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~ 187 (355)
+-|+.+|+ ++++ .+.+.|.|-|-|++|-. .....+++.+|+ . | ....+|+.|.
T Consensus 64 HLMv~~P~---~~i~----~~~~~gad~It~H~Ea~------~~~~~~l~~Ik~-~--------G-----~k~GlAlnP~ 116 (210)
T PRK08005 64 HLMVSSPQ---RWLP----WLAAIRPGWIFIHAESV------QNPSEILADIRA-I--------G-----AKAGLALNPA 116 (210)
T ss_pred EeccCCHH---HHHH----HHHHhCCCEEEEcccCc------cCHHHHHHHHHH-c--------C-----CcEEEEECCC
Confidence 44555663 3443 44456999999999932 235567777776 2 2 4556666654
Q ss_pred CCCCccchhhhhccccEEEeeecc
Q 040722 188 PPANSYLLNSIQRNLNWVHAVTAS 211 (355)
Q Consensus 188 ~~~~~~~~~~l~~~vD~v~lm~yd 211 (355)
.... .+..+.+.+|+|.+|+-+
T Consensus 117 Tp~~--~i~~~l~~vD~VlvMsV~ 138 (210)
T PRK08005 117 TPLL--PYRYLALQLDALMIMTSE 138 (210)
T ss_pred CCHH--HHHHHHHhcCEEEEEEec
Confidence 3332 234566789999999975
No 126
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=44.32 E-value=81 Score=29.10 Aligned_cols=98 Identities=10% Similarity=0.104 Sum_probs=48.7
Q ss_pred HhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC-----------CcccchH
Q 040722 84 EKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT-----------STDMFNV 152 (355)
Q Consensus 84 k~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~-----------~~~~~~~ 152 (355)
.......++++-|+|.+ + ......+..+...++|||||+.-=|.. -.+.+..
T Consensus 48 ~~~~~~~p~~~Ql~g~~-------------~----~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~ 110 (309)
T PF01207_consen 48 PFLPNERPLIVQLFGND-------------P----EDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLL 110 (309)
T ss_dssp -GCC-T-TEEEEEE-S--------------H----HHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHH
T ss_pred cccccccceeEEEeecc-------------H----HHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHh
Confidence 33333467888888853 2 333334556667899999999987762 1345567
Q ss_pred HHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCC-ccc-hhhhhcc-ccEEEeee
Q 040722 153 GLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN-SYL-LNSIQRN-LNWVHAVT 209 (355)
Q Consensus 153 ~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~-~~~l~~~-vD~v~lm~ 209 (355)
..+|+++++ .+. .++.+-+.+....... ..+ .+.+.+. ++.+.|.+
T Consensus 111 ~~iv~~~~~-~~~----------~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~ 159 (309)
T PF01207_consen 111 AEIVKAVRK-AVP----------IPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHG 159 (309)
T ss_dssp HHHHHHHHH-H-S----------SEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEEC
T ss_pred hHHHHhhhc-ccc----------cceEEecccccccchhHHHHHHHHhhhcccceEEEec
Confidence 788888888 663 2345555554431121 122 2233333 88888765
No 127
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=44.12 E-value=1e+02 Score=31.44 Aligned_cols=93 Identities=13% Similarity=0.177 Sum_probs=59.4
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCCC---------C--------------Ccchhhh---hcChhhHHHHHHHHH
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMDT---------N--------------YSIYSSM---VRNSSHRKSFIDSSI 125 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~---------~--------------~~~~~~~---~~~~~~r~~fi~~l~ 125 (355)
.+..++.|++++++. ++-|+|-+-=..+. + ...|... ....+-|.=|++++.
T Consensus 212 tPedfk~fVD~aH~~--GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 212 TPEDFKALVDAAHQA--GIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHH
Confidence 577899999988888 89999876211110 0 0112222 224577888999999
Q ss_pred HHHHHcCCCeEEEEeeC---------------CCCCccc--chHHHHHHHHHHHHhhHH
Q 040722 126 RIARLYGFQGLDFAWTA---------------PNTSTDM--FNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 126 ~~l~~~~~DGididwe~---------------~~~~~~~--~~~~~~l~~l~~~~l~~~ 167 (355)
-||++|.+||+-+|=-. |.....+ ..-+.|++.+.+ .++..
T Consensus 290 ~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~-~i~~~ 347 (628)
T COG0296 290 YWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNS-LIHEE 347 (628)
T ss_pred HHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhh-hhccc
Confidence 99999999999887210 1111122 234578888887 77654
No 128
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=43.53 E-value=2e+02 Score=26.91 Aligned_cols=85 Identities=12% Similarity=0.079 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhc--------ChhhH-----HHHHHHHHHHHHHcCCCeEEEE
Q 040722 73 DNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVR--------NSSHR-----KSFIDSSIRIARLYGFQGLDFA 139 (355)
Q Consensus 73 ~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~--------~~~~r-----~~fi~~l~~~l~~~~~DGidid 139 (355)
....+.+.+++|++ ++|+-+-...+.. ....+..-.. .+... +....++.+++.+|..|.+=+|
T Consensus 137 rDiv~El~~A~rk~--Glk~G~Y~S~~dw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfD 213 (346)
T PF01120_consen 137 RDIVGELADACRKY--GLKFGLYYSPWDW-HHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFD 213 (346)
T ss_dssp S-HHHHHHHHHHHT--T-EEEEEEESSSC-CCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEE
T ss_pred CCHHHHHHHHHHHc--CCeEEEEecchHh-cCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEec
Confidence 34577888888888 7888877765432 1111111111 11111 2456788889999999999999
Q ss_pred eeCCCCCcccchHHHHHHHHHH
Q 040722 140 WTAPNTSTDMFNVGLLFDEWRI 161 (355)
Q Consensus 140 we~~~~~~~~~~~~~~l~~l~~ 161 (355)
...+.. .+...+..+...+|+
T Consensus 214 g~~~~~-~~~~~~~~~~~~i~~ 234 (346)
T PF01120_consen 214 GGWPDP-DEDWDSAELYNWIRK 234 (346)
T ss_dssp STTSCC-CTHHHHHHHHHHHHH
T ss_pred CCCCcc-ccccCHHHHHHHHHH
Confidence 876653 344445666666665
No 129
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=43.39 E-value=73 Score=28.50 Aligned_cols=57 Identities=16% Similarity=0.325 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeCCCCCC-CcchhhhhcChhhHHHHHHHHHHHHHHc
Q 040722 75 QIAKFVDTVEKENPSITILLSIGQGMDTN-YSIYSSMVRNSSHRKSFIDSSIRIARLY 131 (355)
Q Consensus 75 ~~~~~~~~lk~~~p~~kvllsiGg~~~~~-~~~~~~~~~~~~~r~~fi~~l~~~l~~~ 131 (355)
.+..+++.+++.||.+||+++|.--.-.. -+.-.-+.+|.-++..+...+-++++.+
T Consensus 153 ~l~~~~~~l~~~nP~~kiilTVSPVrl~~T~~~~d~~~an~~SKs~Lr~a~~~l~~~~ 210 (251)
T PF08885_consen 153 DLEAIIDLLRSINPDIKIILTVSPVRLIATFRDRDGLVANQYSKSTLRAAAHELVRAF 210 (251)
T ss_pred HHHHHHHHHHhhCCCceEEEEeccchhhcccccccchhhhhhhHHHHHHHHHHHHhcC
Confidence 35677788999999999999995321100 0011235556555555555555555543
No 130
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=43.21 E-value=87 Score=32.45 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEe----------CCCCC----CCc---------ch--------hhhhcChhhHHHHHH
Q 040722 74 NQIAKFVDTVEKENPSITILLSIG----------QGMDT----NYS---------IY--------SSMVRNSSHRKSFID 122 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiG----------g~~~~----~~~---------~~--------~~~~~~~~~r~~fi~ 122 (355)
..|+.++++|++. ++.|++-|- |.... ++. .+ .--.+.+-.|+=.++
T Consensus 265 ~EfK~mV~~lHka--GI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivD 342 (697)
T COG1523 265 KEFKDMVKALHKA--GIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVD 342 (697)
T ss_pred HHHHHHHHHHHHc--CCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHH
Confidence 3688888888888 999999872 11000 001 01 122344778888999
Q ss_pred HHHHHHHHcCCCeEEEEeeCCC
Q 040722 123 SSIRIARLYGFQGLDFAWTAPN 144 (355)
Q Consensus 123 ~l~~~l~~~~~DGididwe~~~ 144 (355)
+|.=|+++++.||.-+|.....
T Consensus 343 sLrYWv~e~hVDGFRFDLa~~l 364 (697)
T COG1523 343 SLRYWVEEYHVDGFRFDLAGVL 364 (697)
T ss_pred HHHHHHHHhCCCceeecchhhc
Confidence 9999999999999999986443
No 131
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=42.71 E-value=1.1e+02 Score=27.98 Aligned_cols=66 Identities=8% Similarity=0.126 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhh----------------------------hhcChhhHHHHHHHHHH
Q 040722 75 QIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSS----------------------------MVRNSSHRKSFIDSSIR 126 (355)
Q Consensus 75 ~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~----------------------------~~~~~~~r~~fi~~l~~ 126 (355)
....+++.++++ ++|+++.+--.-..++..|.. =+.+|+.|+=+. +.++
T Consensus 67 d~~~~i~~l~~~--G~~~~~~~~P~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~-~~~~ 143 (308)
T cd06593 67 DPEGMLSRLKEK--GFKVCLWINPYIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYK-DKLK 143 (308)
T ss_pred CHHHHHHHHHHC--CCeEEEEecCCCCCCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHH-HHHH
Confidence 356778888877 788888763111101111111 145777786554 5555
Q ss_pred HHHHcCCCeEEEEeeCC
Q 040722 127 IARLYGFQGLDFAWTAP 143 (355)
Q Consensus 127 ~l~~~~~DGididwe~~ 143 (355)
-+.++|+||+-+|+-.+
T Consensus 144 ~~~~~Gid~~~~D~~e~ 160 (308)
T cd06593 144 PLLDMGVDCFKTDFGER 160 (308)
T ss_pred HHHHhCCcEEecCCCCC
Confidence 56668999999998543
No 132
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=42.62 E-value=1e+02 Score=29.27 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcc--------------hhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEe
Q 040722 75 QIAKFVDTVEKENPSITILLSIGQGMDTNYSI--------------YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAW 140 (355)
Q Consensus 75 ~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~--------------~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididw 140 (355)
.-..+++++|++.|++. ++.|||... ..+. |..++..--.-.+-++.+++.+....-|.+-+ .
T Consensus 16 lGa~LikaLk~~~~~~e-fvGvgG~~m-~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~~i~~~kpD~~i~-I 92 (381)
T COG0763 16 LGAGLIKALKARYPDVE-FVGVGGEKM-EAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVRYILANKPDVLIL-I 92 (381)
T ss_pred HHHHHHHHHHhhCCCeE-EEEeccHHH-HhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE-e
Confidence 34567889999999887 567887432 1111 22333333333455667777777888886644 2
Q ss_pred eCCCCCcccchH-HHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCC-ccchhhhhccccEEEee
Q 040722 141 TAPNTSTDMFNV-GLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN-SYLLNSIQRNLNWVHAV 208 (355)
Q Consensus 141 e~~~~~~~~~~~-~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~~~~l~~~vD~v~lm 208 (355)
.+| .| ..+.+.||+ +. ++.-+---+.|+-|.. ..-...+.+++|++...
T Consensus 93 DsP-------dFnl~vak~lrk-~~-----------p~i~iihYV~PsVWAWr~~Ra~~i~~~~D~lLai 143 (381)
T COG0763 93 DSP-------DFNLRVAKKLRK-AG-----------PKIKIIHYVSPSVWAWRPKRAVKIAKYVDHLLAI 143 (381)
T ss_pred CCC-------CCchHHHHHHHH-hC-----------CCCCeEEEECcceeeechhhHHHHHHHhhHeeee
Confidence 222 23 357788887 54 2334444455555433 23357789999997554
No 133
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=41.27 E-value=2.2e+02 Score=25.07 Aligned_cols=86 Identities=8% Similarity=-0.004 Sum_probs=54.4
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCC-
Q 040722 113 NSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN- 191 (355)
Q Consensus 113 ~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~- 191 (355)
|.+....++..+.+...-| ++-.|.|....+++.-...+++||+ .|++. +.+..| -+..|.+
T Consensus 87 d~~~~adYl~~l~~aA~P~-----~L~iEgP~d~g~r~~QI~~l~~Lr~-~L~~~-------g~~v~i----VADEWCNT 149 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAAPF-----KLRIEGPMDAGSREAQIEALAELRE-ELDRR-------GINVEI----VADEWCNT 149 (248)
T ss_dssp -HHHHHHHHHHHHHHHTTS------EEEE-SB--SSHHHHHHHHHHHHH-HHHHC-------T--EEE----EE-TT--S
T ss_pred CHHHHHHHHHHHHHhcCCC-----eeeeeCCcCCCChHHHHHHHHHHHH-HHHhc-------CCCCeE----EeehhcCC
Confidence 6677777888877776665 4678999887888888999999999 99875 333333 3334444
Q ss_pred ccchhhh--hccccEEEeeecccCCC
Q 040722 192 SYLLNSI--QRNLNWVHAVTASYYEP 215 (355)
Q Consensus 192 ~~~~~~l--~~~vD~v~lm~yd~~~~ 215 (355)
--|+... ++.+|+|-+.|=|+.|-
T Consensus 150 ~eDI~~F~da~A~dmVQIKtPDLGgi 175 (248)
T PF07476_consen 150 LEDIREFADAKAADMVQIKTPDLGGI 175 (248)
T ss_dssp HHHHHHHHHTT-SSEEEE-GGGGSST
T ss_pred HHHHHHHHhcCCcCEEEecCCCccch
Confidence 2244444 46799999999998763
No 134
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=41.17 E-value=1.5e+02 Score=25.62 Aligned_cols=176 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEE-----eCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCC
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSI-----GQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS 146 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsi-----Gg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~ 146 (355)
........+..++... ++++++++ ||... .+++.|.+++..+++.- .|.|||++.
T Consensus 38 ~~~~~~~~l~~lr~~~-~~piI~T~R~~~eGG~~~----------~~~~~~~~ll~~~~~~~----~d~iDiE~~----- 97 (224)
T PF01487_consen 38 SAEDISEQLAELRRSL-DLPIIFTVRTKEEGGRFQ----------GSEEEYLELLERAIRLG----PDYIDIELD----- 97 (224)
T ss_dssp SHHHHHHHHHHHHHHC-TSEEEEE--BGGGTSSBS----------S-HHHHHHHHHHHHHHT----SSEEEEEGG-----
T ss_pred ChHHHHHHHHHHHHhC-CCCEEEEecccccCCCCc----------CCHHHHHHHHHHHHHcC----CCEEEEEcc-----
Q ss_pred cccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEE-ecCCCCCC-----ccchhhhhccccEEEeeecccCCCCCCCC
Q 040722 147 TDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTAR-FLYSPPAN-----SYLLNSIQRNLNWVHAVTASYYEPVSTNF 220 (355)
Q Consensus 147 ~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a-~~~~~~~~-----~~~~~~l~~~vD~v~lm~yd~~~~~~~~~ 220 (355)
.+...+.. +. ..+.. +.+.++|.- +...+... --....+..-+=.+.+|+.+....
T Consensus 98 ----~~~~~~~~-~~-~~~~~-------~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~----- 159 (224)
T PF01487_consen 98 ----LFPDDLKS-RL-AARKG-------GTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDV----- 159 (224)
T ss_dssp ----CCHHHHHH-HH-HHHHT-------TSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHH-----
T ss_pred ----cchhHHHH-HH-HHhhC-------CCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHH-----
Q ss_pred CCCCCcCCCCCCCCCcccHHHHHHHHHHCCCCCCceEEeeecceeeeeecCCCCCCCCCcccCCCCCCCcccchHHHHHH
Q 040722 221 TAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVMGLPFYGYAWTLVKPEDNGIGAAATGPALHGNGLVTYKEIKNY 300 (355)
Q Consensus 221 ~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~ 300 (355)
..+........+. ....-|.+++.-.|+.-++.++.-..+-..+.......+|.++..++.++
T Consensus 160 ----------------~~l~~~~~~~~~~-~~~p~i~~~MG~~G~~SRi~~~~~Gs~~t~~~~~~~sApGQl~~~~l~~~ 222 (224)
T PF01487_consen 160 ----------------LRLLRFTKEFREE-PDIPVIAISMGELGRISRILNPIFGSVLTFASAGEASAPGQLTLEELREI 222 (224)
T ss_dssp ----------------HHHHHHHHHHHHH-TSSEEEEEEETGGGHHHHHCHHHHTBSEEEEBSSS-SSTT-EBHHHHHHH
T ss_pred ----------------HHHHHHHHHHhhc-cCCcEEEEEcCCCchhHHHHHhhhcCCcccCCCCCCCCCCCCcHHHHHHH
Q ss_pred HH
Q 040722 301 IK 302 (355)
Q Consensus 301 ~~ 302 (355)
++
T Consensus 223 ~~ 224 (224)
T PF01487_consen 223 LH 224 (224)
T ss_dssp HH
T ss_pred hC
No 135
>PRK14866 hypothetical protein; Provisional
Probab=40.92 E-value=60 Score=31.62 Aligned_cols=69 Identities=13% Similarity=0.017 Sum_probs=40.7
Q ss_pred CCcEEEEEEeCCCCCCCcchhhhhc-----------ChhhHHHH-HH-HHHHHHHHcCCCeEEEEeeCCCCCcccchHHH
Q 040722 88 PSITILLSIGQGMDTNYSIYSSMVR-----------NSSHRKSF-ID-SSIRIARLYGFQGLDFAWTAPNTSTDMFNVGL 154 (355)
Q Consensus 88 p~~kvllsiGg~~~~~~~~~~~~~~-----------~~~~r~~f-i~-~l~~~l~~~~~DGididwe~~~~~~~~~~~~~ 154 (355)
...++++.|||... ...|.+++. +-.. ..+ -. .+.+.+++.+.|.+.|||....+ .++..+..
T Consensus 183 ~~~~~~iG~GGgHY--apr~t~i~le~~~~~GHi~pky~l-~~l~~~~~i~~a~~~~~~~~a~iD~Ks~k~-~~r~~i~~ 258 (451)
T PRK14866 183 HTDRPLVGFGGGHY--APRQTRIVLETDWAFGHIAADWQL-GALGDPAVLRAAFEASGADAAYIDRKAMSS-GDRPRLEA 258 (451)
T ss_pred cCCCEEEEeCCCCc--chhHHHHhhcCCeeEEeeccccch-hccCcHHHHHHHHHhcCCCEEEEecCCCCH-HHHHHHHH
Confidence 46799999999765 444433322 1110 000 01 34445556789999999986665 66666666
Q ss_pred HHHHHH
Q 040722 155 LFDEWR 160 (355)
Q Consensus 155 ~l~~l~ 160 (355)
+++++-
T Consensus 259 ~l~~lg 264 (451)
T PRK14866 259 LLEELG 264 (451)
T ss_pred HHHHCC
Confidence 665543
No 136
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=40.29 E-value=54 Score=32.30 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=31.9
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhH
Q 040722 113 NSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKL 166 (355)
Q Consensus 113 ~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~ 166 (355)
+++-|+.+++.+.-|++++|+||+-||--.-.. ..|++++++ ++++
T Consensus 207 np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~-------~~f~~~~~~-~~~~ 252 (479)
T PRK09441 207 HPEVREELKYWAKWYMETTGFDGFRLDAVKHID-------AWFIKEWIE-HVRE 252 (479)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC-------HHHHHHHHH-HHHH
Confidence 577788888776667777999999999532211 346677776 6654
No 137
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.58 E-value=1.7e+02 Score=26.69 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEeCCC--CCCCcchh-----------------hhhcChhhHHHHHHHHHHHHHHcCCC
Q 040722 74 NQIAKFVDTVEKENPSITILLSIGQGM--DTNYSIYS-----------------SMVRNSSHRKSFIDSSIRIARLYGFQ 134 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiGg~~--~~~~~~~~-----------------~~~~~~~~r~~fi~~l~~~l~~~~~D 134 (355)
+....+++.||++ ++|+++.+--.. ....+.+. --..+|+.++-+-+.+.+.+...|+|
T Consensus 74 Pdp~~mi~~Lh~~--G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gid 151 (292)
T cd06595 74 PDPEKLLQDLHDR--GLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVD 151 (292)
T ss_pred CCHHHHHHHHHHC--CCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCc
Confidence 4456788888887 899998772210 00011111 12457888888999999999999999
Q ss_pred eEEEEeeCCC
Q 040722 135 GLDFAWTAPN 144 (355)
Q Consensus 135 Gididwe~~~ 144 (355)
|+=+|+-.+.
T Consensus 152 g~W~D~~E~~ 161 (292)
T cd06595 152 FWWLDWQQGN 161 (292)
T ss_pred EEEecCCCCc
Confidence 9999985443
No 138
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=39.15 E-value=2.7e+02 Score=26.08 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC-----Ccccc
Q 040722 76 IAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT-----STDMF 150 (355)
Q Consensus 76 ~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~-----~~~~~ 150 (355)
...+++.+++...++.+.++||+... ......-+.|++.+-.+- . ..|.++|+.--|.. .++.+
T Consensus 121 ~~~~l~~i~~~~~~~~i~vsi~~~~~---------~~~~~~~~dy~~~~~~~~-~-~ad~iElNlScPn~~~~~~~~~~~ 189 (335)
T TIGR01036 121 ADVLVERLKRARYKGPIGINIGKNKD---------TPSEDAKEDYAACLRKLG-P-LADYLVVNVSSPNTPGLRDLQYKA 189 (335)
T ss_pred HHHHHHHHhhccCCCcEEEEEeCCCC---------CCcccCHHHHHHHHHHHh-h-hCCEEEEEccCCCCCCcccccCHH
Confidence 34444455554457889999987531 011223345555555443 2 38999999976653 23445
Q ss_pred hHHHHHHHHHHHHhh
Q 040722 151 NVGLLFDEWRIAATK 165 (355)
Q Consensus 151 ~~~~~l~~l~~~~l~ 165 (355)
.+.++++.+|+ ..+
T Consensus 190 ~~~~i~~~V~~-~~~ 203 (335)
T TIGR01036 190 ELRDLLTAVKQ-EQD 203 (335)
T ss_pred HHHHHHHHHHH-HHH
Confidence 67778888887 664
No 139
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=39.12 E-value=2.4e+02 Score=26.73 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeCCCC
Q 040722 118 KSFIDSSIRIARLYGFQGLDFAWTAPNT 145 (355)
Q Consensus 118 ~~fi~~l~~~l~~~~~DGididwe~~~~ 145 (355)
+.-+.++++..-++|+.-||=.|-|-..
T Consensus 33 ~~~~~~~i~~aie~GiNyidTA~~Yh~g 60 (391)
T COG1453 33 EENANETIDYAIEHGINYIDTAWPYHGG 60 (391)
T ss_pred HHHHHHHHHHHHHcCCceEeecccccCC
Confidence 5567778888888999999999987544
No 140
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=39.04 E-value=1.5e+02 Score=28.33 Aligned_cols=86 Identities=10% Similarity=-0.009 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhh-------hcChhhHHHH---HHHHHHHHHHcCCCeEEEEee
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSM-------VRNSSHRKSF---IDSSIRIARLYGFQGLDFAWT 141 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~-------~~~~~~r~~f---i~~l~~~l~~~~~DGididwe 141 (355)
.....+.+.+++|++ ++|+-+-...+.. ....+... ...+...+-+ ..+|.++|.+||=|.+=+|+.
T Consensus 126 krDiv~el~~A~rk~--Glk~G~Y~S~~DW-~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 126 KRDLVGELADAVRKR--GLKFGLYHSLFDW-FNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred CcchHHHHHHHHHHc--CCeEEEEcCHHHh-CCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 345678888888888 8988887664322 11112110 1111222222 689999999999999999987
Q ss_pred CCCCCcccchHHHHHHHHHH
Q 040722 142 APNTSTDMFNVGLLFDEWRI 161 (355)
Q Consensus 142 ~~~~~~~~~~~~~~l~~l~~ 161 (355)
++.. .+......|++.+|+
T Consensus 203 ~~~~-~~~~~~~~l~~~~~~ 221 (384)
T smart00812 203 WEAP-DDYWRSKEFLAWLYN 221 (384)
T ss_pred CCCc-cchhcHHHHHHHHHH
Confidence 6654 222344556666665
No 141
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=38.81 E-value=1.6e+02 Score=30.80 Aligned_cols=92 Identities=14% Similarity=0.077 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHhhCCCcEE---EEEE-eCCCCCCCcch-------------------------hh------hhcChhhH
Q 040722 73 DNQIAKFVDTVEKENPSITI---LLSI-GQGMDTNYSIY-------------------------SS------MVRNSSHR 117 (355)
Q Consensus 73 ~~~~~~~~~~lk~~~p~~kv---llsi-Gg~~~~~~~~~-------------------------~~------~~~~~~~r 117 (355)
...++.+++.+|+++|++|- +.++ |-|++..++.- .. -+-+|+.-
T Consensus 287 ~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~~~~g~glv~p~~~ 366 (747)
T PF05691_consen 287 PSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSIVKGGLGLVDPEDA 366 (747)
T ss_pred cccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCccccccccccCcccccCHHHH
Confidence 35688899999999988764 3444 33433111100 00 13467888
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeCCCC--CcccchHHHHHHHHHHHHhh
Q 040722 118 KSFIDSSIRIARLYGFQGLDFAWTAPNT--STDMFNVGLLFDEWRIAATK 165 (355)
Q Consensus 118 ~~fi~~l~~~l~~~~~DGididwe~~~~--~~~~~~~~~~l~~l~~~~l~ 165 (355)
..|-+..-++|..-|+|||-+|-+.... ......-+++.+...+ ++.
T Consensus 367 ~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~-AL~ 415 (747)
T PF05691_consen 367 FRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQD-ALE 415 (747)
T ss_pred HHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHH-HHH
Confidence 9999999999999999999999775432 1112233455555544 444
No 142
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=37.79 E-value=59 Score=29.08 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=26.8
Q ss_pred EEEeeecccCCCCCCCCCCCCCcCCCCCCCCCcccHHHHHHHHHHCCCCCCceEE
Q 040722 204 WVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLSADKLVM 258 (355)
Q Consensus 204 ~v~lm~yd~~~~~~~~~~~~~apl~~~~~~~~~~~~~~~v~~~~~~g~~~~Kl~l 258 (355)
-+|+|+||+.|.- ..+|-++-. +....++.+.+.+....-++++|+|
T Consensus 88 n~nv~~~DYSGyG--~S~G~psE~------n~y~Di~avye~Lr~~~g~~~~Iil 134 (258)
T KOG1552|consen 88 NCNVVSYDYSGYG--RSSGKPSER------NLYADIKAVYEWLRNRYGSPERIIL 134 (258)
T ss_pred cceEEEEeccccc--ccCCCcccc------cchhhHHHHHHHHHhhcCCCceEEE
Confidence 4699999998852 222333322 1135777777766543226666654
No 143
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=36.46 E-value=1.7e+02 Score=29.16 Aligned_cols=90 Identities=16% Similarity=0.150 Sum_probs=53.8
Q ss_pred HHHHHHHHhhCCCcEEEEEE---eCCCCCCCcc--hhhhh--cChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC-Cc-
Q 040722 77 AKFVDTVEKENPSITILLSI---GQGMDTNYSI--YSSMV--RNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT-ST- 147 (355)
Q Consensus 77 ~~~~~~lk~~~p~~kvllsi---Gg~~~~~~~~--~~~~~--~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~-~~- 147 (355)
..+++.+++.+|++|++.|- =+|.-++... ...+- ..++-++.+++=+++|++.|.=.||+|+=-.+.+ |.
T Consensus 156 ip~ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~ 235 (496)
T PF02055_consen 156 IPLIKEALAINPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDN 235 (496)
T ss_dssp HHHHHHHHHHHTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCG
T ss_pred HHHHHHHHHhCCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCC
Confidence 46777888889999999885 1121100000 01111 1345678999999999999999999997543332 11
Q ss_pred -------------ccchHHHHHHH-HHHHHhhHH
Q 040722 148 -------------DMFNVGLLFDE-WRIAATKLE 167 (355)
Q Consensus 148 -------------~~~~~~~~l~~-l~~~~l~~~ 167 (355)
..+....||+. |+. +|++.
T Consensus 236 ~~~~~~~~~s~~~t~~~~~~Fi~~~LgP-~l~~~ 268 (496)
T PF02055_consen 236 GSDPNYPWPSMGWTPEEQADFIKNYLGP-ALRKA 268 (496)
T ss_dssp GGSTT-SSC--B--HHHHHHHHHHTHHH-HHHTS
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHH-HHHhc
Confidence 11234678886 888 88754
No 144
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=36.29 E-value=3e+02 Score=24.27 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeC
Q 040722 73 DNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTA 142 (355)
Q Consensus 73 ~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~ 142 (355)
......++..+++...++++++++--... ...+ -.+.+.|.++. ...+...+.|=|||.++.
T Consensus 46 ~~~~~~~i~~l~~~~~~~p~I~T~Rt~~E--GG~~---~~~~~~~~~ll---~~~~~~~~~d~vDiE~~~ 107 (238)
T PRK13575 46 VDQLAEMITKLKVLQDSFKLLVTYRTKLQ--GGYG---QFTNDLYLNLL---SDLANINGIDMIDIEWQA 107 (238)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEeCChhh--CCCC---CCCHHHHHHHH---HHHHHhCCCCEEEEEccc
Confidence 34455566667776667899999942111 1111 11344444443 344555668999998763
No 145
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=35.91 E-value=1.8e+02 Score=30.37 Aligned_cols=70 Identities=7% Similarity=0.074 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhhCCCcEE---EEEE-eCCCCCCCcc--h------------------h-----------hhhcChhhHH
Q 040722 74 NQIAKFVDTVEKENPSITI---LLSI-GQGMDTNYSI--Y------------------S-----------SMVRNSSHRK 118 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kv---llsi-Gg~~~~~~~~--~------------------~-----------~~~~~~~~r~ 118 (355)
..++.+++.+|++++++|= +-+| |-|++..++. + . -.+-+|+.-.
T Consensus 305 ~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~~~g~glv~Pe~~~ 384 (777)
T PLN02711 305 KGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVPPELAY 384 (777)
T ss_pred CcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccccCcccccCHHHHH
Confidence 4677888899998876653 3444 3343311111 0 0 1235678888
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeeCC
Q 040722 119 SFIDSSIRIARLYGFQGLDFAWTAP 143 (355)
Q Consensus 119 ~fi~~l~~~l~~~~~DGididwe~~ 143 (355)
.|-+.+-++|.+.|+|||-+|-+..
T Consensus 385 ~FY~~~hs~Las~GVDgVKVDvQ~~ 409 (777)
T PLN02711 385 QMYEGLHSHLQSVGIDGVKVDVIHL 409 (777)
T ss_pred HHHHHHHHHHHHcCCCeEEEchhhh
Confidence 9999999999999999999996643
No 146
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.86 E-value=2.9e+02 Score=23.96 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=51.9
Q ss_pred CCCCc-EEEEeeEEEeCCC-------------cEEeeCCCCChhHHHHHHHHHHhhC---CCcEEE---EEEeCCCCC--
Q 040722 45 YDLFT-HLICPSADINSTT-------------YQLSLSLPSDDNQIAKFVDTVEKEN---PSITIL---LSIGQGMDT-- 102 (355)
Q Consensus 45 ~~~~t-hii~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~lk~~~---p~~kvl---lsiGg~~~~-- 102 (355)
.+.++ ||..+|+++++|- +++.+.++-.-....+++..+|+++ +|.+.+ --|||....
T Consensus 63 I~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~ 142 (249)
T KOG0183|consen 63 ISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGT 142 (249)
T ss_pred heeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCC
Confidence 45565 9999999999875 2233442334455677777888876 344333 336775431
Q ss_pred -------CCcchhhhhcChhhHHHHHHHHHHHHHHc
Q 040722 103 -------NYSIYSSMVRNSSHRKSFIDSSIRIARLY 131 (355)
Q Consensus 103 -------~~~~~~~~~~~~~~r~~fi~~l~~~l~~~ 131 (355)
-+..|+....+..-| -.+.+..||.++
T Consensus 143 p~lyqtePsG~f~ewka~aiGr--~sk~VrEflEK~ 176 (249)
T KOG0183|consen 143 PRLYQTEPSGIFSEWKANAIGR--SSKTVREFLEKN 176 (249)
T ss_pred eeeEeeCCCcchhhhhcccccc--ccHHHHHHHHHh
Confidence 134566666555433 457788888884
No 147
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=35.78 E-value=2.7e+02 Score=24.46 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEeC---CCCCCCcchhhhhcChhhHHHHHHHHHHHHHHc-CCCeEEEEeeCCCCC---
Q 040722 74 NQIAKFVDTVEKENPSITILLSIGQ---GMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLY-GFQGLDFAWTAPNTS--- 146 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiGg---~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~-~~DGididwe~~~~~--- 146 (355)
..+.++++.++++ +++|++.+-. |.. ....+. ......+.|.+-+..+.+.| +-+. .+-||-..+|
T Consensus 62 ~~ld~~v~~a~~~--gi~vild~h~~~~w~~-~~~~~~---~~~~~~~~~~~~~~~la~~y~~~~~-v~~~el~NEP~~~ 134 (281)
T PF00150_consen 62 ARLDRIVDAAQAY--GIYVILDLHNAPGWAN-GGDGYG---NNDTAQAWFKSFWRALAKRYKDNPP-VVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEEEESTTCSS-STSTTT---THHHHHHHHHHHHHHHHHHHTTTTT-TEEEESSSSGCST
T ss_pred HHHHHHHHHHHhC--CCeEEEEeccCccccc-cccccc---cchhhHHHHHhhhhhhccccCCCCc-EEEEEecCCcccc
Confidence 3456666666666 8999999865 311 111111 11122223333344444455 2222 3345533221
Q ss_pred cc--------cchHHHHHHHHHHHHhhHH
Q 040722 147 TD--------MFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 147 ~~--------~~~~~~~l~~l~~~~l~~~ 167 (355)
.. ...+..+.+++.+ ++++.
T Consensus 135 ~~~~~w~~~~~~~~~~~~~~~~~-~Ir~~ 162 (281)
T PF00150_consen 135 NDDANWNAQNPADWQDWYQRAID-AIRAA 162 (281)
T ss_dssp TSTTTTSHHHTHHHHHHHHHHHH-HHHHT
T ss_pred CCccccccccchhhhhHHHHHHH-HHHhc
Confidence 11 2556777777777 77765
No 148
>PRK01060 endonuclease IV; Provisional
Probab=35.70 E-value=77 Score=28.43 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHH
Q 040722 121 IDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 121 i~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
+...++.+++.|||||+|.-+.|........-...++++|+ .+++.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~-~~~~~ 59 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKA-ACEKY 59 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHH-HHHHc
Confidence 55678899999999999987655431111222335677777 66543
No 149
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=34.79 E-value=74 Score=25.46 Aligned_cols=52 Identities=8% Similarity=0.007 Sum_probs=40.1
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeEEEE-eeCCCCCcccchHHHHHHHHHHHHh
Q 040722 112 RNSSHRKSFIDSSIRIARLYGFQGLDFA-WTAPNTSTDMFNVGLLFDEWRIAAT 164 (355)
Q Consensus 112 ~~~~~r~~fi~~l~~~l~~~~~DGidid-we~~~~~~~~~~~~~~l~~l~~~~l 164 (355)
-+|.+-..+.+.+++++++.+-.-|-|| .||..-..+-.....|+..||+ ..
T Consensus 55 I~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD-~~ 107 (136)
T PF05763_consen 55 ISPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKD-YA 107 (136)
T ss_pred cCchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHH-He
Confidence 3678888999999999999665677788 5776654556677888888887 54
No 150
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=34.25 E-value=2.5e+02 Score=24.11 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=42.2
Q ss_pred HHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCCccchhhhhccccEEEe
Q 040722 128 ARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLNSIQRNLNWVHA 207 (355)
Q Consensus 128 l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~l 207 (355)
+.+-|.+.+-|+.|... ....+++.+|+ . | ....+++-|..... ++..+.+.+|++.|
T Consensus 83 ~a~agas~~tfH~E~~q------~~~~lv~~ir~-~--------G-----mk~G~alkPgT~Ve--~~~~~~~~~D~vLv 140 (224)
T KOG3111|consen 83 MAKAGASLFTFHYEATQ------KPAELVEKIRE-K--------G-----MKVGLALKPGTPVE--DLEPLAEHVDMVLV 140 (224)
T ss_pred HHhcCcceEEEEEeecc------CHHHHHHHHHH-c--------C-----CeeeEEeCCCCcHH--HHHHhhccccEEEE
Confidence 44568999999998332 25677777776 2 2 66777777554432 34456678999999
Q ss_pred eecc
Q 040722 208 VTAS 211 (355)
Q Consensus 208 m~yd 211 (355)
||-.
T Consensus 141 MtVe 144 (224)
T KOG3111|consen 141 MTVE 144 (224)
T ss_pred EEec
Confidence 9964
No 151
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=34.25 E-value=75 Score=21.07 Aligned_cols=39 Identities=10% Similarity=-0.012 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCCeE-EEEeeCCCCCcccchHHHHHHHHHH
Q 040722 122 DSSIRIARLYGFQGL-DFAWTAPNTSTDMFNVGLLFDEWRI 161 (355)
Q Consensus 122 ~~l~~~l~~~~~DGi-didwe~~~~~~~~~~~~~~l~~l~~ 161 (355)
..+++.|+..|+||. .|.||-+.- +....+..=++-||.
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~~-~~~~G~~~a~~~lr~ 42 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDALM-DPEEGAREAAAFLRK 42 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STTT-SHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCceEEEEeecCCC-CHHHHHHHHHHHHHH
Confidence 357888999999995 788885554 333445544555554
No 152
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=34.20 E-value=74 Score=28.53 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=31.7
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHH
Q 040722 112 RNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 112 ~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
.+++.|+.+++ ++++..++++||+-||--.-. -..|+++++. +++..
T Consensus 142 ~n~~v~~~i~~-~~~~w~~~giDGfR~D~~~~~-------~~~~~~~~~~-~~~~~ 188 (316)
T PF00128_consen 142 ENPEVREYIID-VLKFWIEEGIDGFRLDAAKHI-------PKEFWKEFRD-EVKEE 188 (316)
T ss_dssp TSHHHHHHHHH-HHHHHHHTTESEEEETTGGGS-------SHHHHHHHHH-HHHHH
T ss_pred hhhhhhhhhcc-cccchhhceEeEEEEcccccc-------chhhHHHHhh-hhhhh
Confidence 45667777777 666555667999999853222 1377788887 77654
No 153
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=33.94 E-value=1.7e+02 Score=27.01 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcc-hhhh----------------------------hcChhhHHHHHHHH
Q 040722 74 NQIAKFVDTVEKENPSITILLSIGQGMDTNYSI-YSSM----------------------------VRNSSHRKSFIDSS 124 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~-~~~~----------------------------~~~~~~r~~fi~~l 124 (355)
+..+.+++.|+++ ++|+++.|--.-..++.. +..+ +.||+.|+=+.+.+
T Consensus 71 Pdp~~mi~~Lh~~--G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 148 (317)
T cd06594 71 PGLDELIEELKAR--GIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVI 148 (317)
T ss_pred CCHHHHHHHHHHC--CCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHH
Confidence 3466788888888 799988873221101111 1111 34688999999999
Q ss_pred HHHHHHcCCCeEEEEeeC
Q 040722 125 IRIARLYGFQGLDFAWTA 142 (355)
Q Consensus 125 ~~~l~~~~~DGididwe~ 142 (355)
.+++.++|+||+=+|+..
T Consensus 149 ~~~~~~~Gvdg~w~D~~E 166 (317)
T cd06594 149 KEMLLDLGLSGWMADFGE 166 (317)
T ss_pred HHHhhhcCCcEEEecCCC
Confidence 999889999999999843
No 154
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=33.75 E-value=1.1e+02 Score=30.67 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=35.4
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeEEEEe-eCCCC-----CcccchHHHHHHHHHHHHhhHH
Q 040722 112 RNSSHRKSFIDSSIRIARLYGFQGLDFAW-TAPNT-----STDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 112 ~~~~~r~~fi~~l~~~l~~~~~DGididw-e~~~~-----~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
.+++-|+.+++.+..|++ +|+||+-+|- .+... ..+...-..|++++++ .++..
T Consensus 171 ~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~-~v~~~ 230 (539)
T TIGR02456 171 DNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRK-MVDRE 230 (539)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHH-HHHHh
Confidence 467778888887777776 8999999994 22211 0111112468889988 88754
No 155
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=33.63 E-value=2.8e+02 Score=22.98 Aligned_cols=110 Identities=11% Similarity=0.064 Sum_probs=57.9
Q ss_pred CCCcEEEEeeEEEeCCCcEE-ee-CC---CCChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHH
Q 040722 46 DLFTHLICPSADINSTTYQL-SL-SL---PSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSF 120 (355)
Q Consensus 46 ~~~thii~~~~~~~~~~~~~-~~-~~---~~~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~f 120 (355)
-.|++||+-+........-. .. .. .........+.+.+.+. |+||+++++-. +..|.. .+.+....+
T Consensus 32 ~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~--Gmkv~~Gl~~~----~~~w~~--~~~~~~~~~ 103 (166)
T PF14488_consen 32 IGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKY--GMKVFVGLYFD----PDYWDQ--GDLDWEAER 103 (166)
T ss_pred cCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHc--CCEEEEeCCCC----chhhhc--cCHHHHHHH
Confidence 35888888766554321000 00 00 01223455555555555 89999998753 333442 454444444
Q ss_pred HHHHHHHHHH-cC----CCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHH
Q 040722 121 IDSSIRIARL-YG----FQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 121 i~~l~~~l~~-~~----~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~ 167 (355)
.+.+++-+.+ || |.|--|-.|-.... .+-..+++.|++ .++..
T Consensus 104 ~~~v~~el~~~yg~h~sf~GWYip~E~~~~~---~~~~~~~~~l~~-~lk~~ 151 (166)
T PF14488_consen 104 NKQVADELWQRYGHHPSFYGWYIPYEIDDYN---WNAPERFALLGK-YLKQI 151 (166)
T ss_pred HHHHHHHHHHHHcCCCCCceEEEecccCCcc---cchHHHHHHHHH-HHHHh
Confidence 4444443333 33 99999998844431 122556666666 66554
No 156
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=32.80 E-value=49 Score=31.06 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=23.1
Q ss_pred ECCHHHHHHHHHHHHHcCCceEEEe
Q 040722 330 FDDVEAVRAKIAYAKEKRLLGYYVW 354 (355)
Q Consensus 330 ydd~~S~~~K~~~~~~~glgGv~iW 354 (355)
-.|+++++..+++|+++|+-|+.+|
T Consensus 54 l~~p~v~~~Q~~lA~~~GI~gF~~~ 78 (345)
T PF14307_consen 54 LRDPEVMEKQAELAKEYGIDGFCFY 78 (345)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 4599999999999999999999987
No 157
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=32.71 E-value=2.4e+02 Score=26.38 Aligned_cols=89 Identities=9% Similarity=0.129 Sum_probs=44.4
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeC---CCCCC----Ccchhhhh--cChhhHHHHHHHHHHHHHHcCCCeEEEEeeC
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQ---GMDTN----YSIYSSMV--RNSSHRKSFIDSSIRIARLYGFQGLDFAWTA 142 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg---~~~~~----~~~~~~~~--~~~~~r~~fi~~l~~~l~~~~~DGididwe~ 142 (355)
+......+.+++|+. ++||+|.+-= |.+.. +..|..+- .=.+....+..++++.|+..| +..||-+
T Consensus 56 ~~~~~~~~akrak~~--Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G---~~pd~VQ 130 (332)
T PF07745_consen 56 DLEDVIALAKRAKAA--GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAG---VTPDMVQ 130 (332)
T ss_dssp SHHHHHHHHHHHHHT--T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT-----ESEEE
T ss_pred CHHHHHHHHHHHHHC--CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCC---CCccEEE
Confidence 444555666666666 9999999953 11100 22232220 001334456667777777655 7788866
Q ss_pred CCC------------CcccchHHHHHHHHHHHHhhH
Q 040722 143 PNT------------STDMFNVGLLFDEWRIAATKL 166 (355)
Q Consensus 143 ~~~------------~~~~~~~~~~l~~l~~~~l~~ 166 (355)
.++ ..+..+|..|++.-.+ ++++
T Consensus 131 VGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~-AVr~ 165 (332)
T PF07745_consen 131 VGNEINNGMLWPDGKPSNWDNLAKLLNAGIK-AVRE 165 (332)
T ss_dssp ESSSGGGESTBTTTCTT-HHHHHHHHHHHHH-HHHT
T ss_pred eCccccccccCcCCCccCHHHHHHHHHHHHH-HHHh
Confidence 553 2344556666655555 5554
No 158
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=32.65 E-value=51 Score=23.49 Aligned_cols=29 Identities=10% Similarity=0.300 Sum_probs=26.0
Q ss_pred chhhhhcChhhHHHHHHHHHHHHHHcCCC
Q 040722 106 IYSSMVRNSSHRKSFIDSSIRIARLYGFQ 134 (355)
Q Consensus 106 ~~~~~~~~~~~r~~fi~~l~~~l~~~~~D 134 (355)
.|..++.+++.|++|.++=-.++++||++
T Consensus 8 ~~~~~~~~~~~re~f~~dp~a~~~~~~Lt 36 (77)
T cd07321 8 LLEQLLVKPEVKERFKADPEAVLAEYGLT 36 (77)
T ss_pred HHHHHhcCHHHHHHHHhCHHHHHHHcCCC
Confidence 46677889999999999999999999876
No 159
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=32.55 E-value=1.4e+02 Score=27.01 Aligned_cols=74 Identities=14% Similarity=0.245 Sum_probs=43.6
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccch
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFN 151 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~ 151 (355)
....+.++++-.|++ +|+|+|-.--... ..... -.++ .+...+.+++.|..||-+||-.. +.+.
T Consensus 71 ~~~dl~elv~Ya~~K--gVgi~lw~~~~~~---~~~~~------~~~~-~~~~f~~~~~~Gv~GvKidF~~~----d~Q~ 134 (273)
T PF10566_consen 71 PDFDLPELVDYAKEK--GVGIWLWYHSETG---GNVAN------LEKQ-LDEAFKLYAKWGVKGVKIDFMDR----DDQE 134 (273)
T ss_dssp TT--HHHHHHHHHHT--T-EEEEEEECCHT---TBHHH------HHCC-HHHHHHHHHHCTEEEEEEE--SS----TSHH
T ss_pred CccCHHHHHHHHHHc--CCCEEEEEeCCcc---hhhHh------HHHH-HHHHHHHHHHcCCCEEeeCcCCC----CCHH
Confidence 345678888888888 7888877643211 11111 1122 38888999999999999999733 3344
Q ss_pred HHHHHHHHHH
Q 040722 152 VGLLFDEWRI 161 (355)
Q Consensus 152 ~~~~l~~l~~ 161 (355)
.+++.+++-+
T Consensus 135 ~v~~y~~i~~ 144 (273)
T PF10566_consen 135 MVNWYEDILE 144 (273)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555444
No 160
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=32.33 E-value=1.8e+02 Score=25.39 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=41.5
Q ss_pred HHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCCccchhhhhccccEEE
Q 040722 127 IARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLNSIQRNLNWVH 206 (355)
Q Consensus 127 ~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~ 206 (355)
.+.+.|.|=|-|+.|.. .....+++.+|+ . + ....+++.|..... .+..+.+.+|+|.
T Consensus 80 ~~~~~gad~I~~H~Ea~------~~~~~~l~~Ir~-~-----------g--~k~GlalnP~T~~~--~i~~~l~~vD~Vl 137 (223)
T PRK08745 80 DFADAGATTISFHPEAS------RHVHRTIQLIKS-H-----------G--CQAGLVLNPATPVD--ILDWVLPELDLVL 137 (223)
T ss_pred HHHHhCCCEEEEcccCc------ccHHHHHHHHHH-C-----------C--CceeEEeCCCCCHH--HHHHHHhhcCEEE
Confidence 33446999999999832 235677777777 2 1 44556666443332 2445678899999
Q ss_pred eeecc
Q 040722 207 AVTAS 211 (355)
Q Consensus 207 lm~yd 211 (355)
+||-+
T Consensus 138 vMtV~ 142 (223)
T PRK08745 138 VMSVN 142 (223)
T ss_pred EEEEC
Confidence 99975
No 161
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=32.31 E-value=1.7e+02 Score=25.34 Aligned_cols=73 Identities=8% Similarity=-0.010 Sum_probs=39.9
Q ss_pred HHHHHHHcCCCeEEEEeeCCCCCcccc----hHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCC-ccchhhh
Q 040722 124 SIRIARLYGFQGLDFAWTAPNTSTDMF----NVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN-SYLLNSI 198 (355)
Q Consensus 124 l~~~l~~~~~DGididwe~~~~~~~~~----~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~~~~l 198 (355)
+++.+...|+|-|-||+|....+.++. +...+++.++. . + .....+-+.++...... .-|+..+
T Consensus 13 ~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~-~-~---------~~~~~~~VRvn~~~~~~~~~Dl~~l 81 (221)
T PF03328_consen 13 MLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRA-A-R---------AAGSEIIVRVNSLDSPHIERDLEAL 81 (221)
T ss_dssp HHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHH-H-T---------TSSSEEEEE-SSTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcc-c-c---------cccccceecCCCCCcchhhhhhhhc
Confidence 344556789999999999877544443 33444444443 1 1 22246667776533222 2234445
Q ss_pred hccccEEEe
Q 040722 199 QRNLNWVHA 207 (355)
Q Consensus 199 ~~~vD~v~l 207 (355)
..-+|.|.+
T Consensus 82 ~~g~~gI~l 90 (221)
T PF03328_consen 82 DAGADGIVL 90 (221)
T ss_dssp HTTSSEEEE
T ss_pred ccCCCeeec
Confidence 556777655
No 162
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.21 E-value=2e+02 Score=23.56 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEE
Q 040722 73 DNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDF 138 (355)
Q Consensus 73 ~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGidi 138 (355)
...+..+++.+++.+|+.++++.---... ..... ...+....+.+.+.+.+..+++++.=||+
T Consensus 92 ~~~l~~li~~i~~~~~~~~iil~t~~p~~--~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 154 (188)
T cd01827 92 KKDYETMIDSFQALPSKPKIYICYPIPAY--YGDGG-FINDNIIKKEIQPMIDKIAKKLNLKLIDL 154 (188)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeCCccc--ccCCC-ccchHHHHHHHHHHHHHHHHHcCCcEEEc
Confidence 35678888889998899888764221111 11111 12333445567777778888888766654
No 163
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=32.03 E-value=2.7e+02 Score=24.32 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=47.6
Q ss_pred hhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecC
Q 040722 107 YSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLY 186 (355)
Q Consensus 107 ~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~ 186 (355)
.+-|+.+| .+++ ....+.|.|-|-++.|.. ....+.++.+|+ . | ....+++.|
T Consensus 66 vHLMV~~p---~~~i----~~fa~agad~It~H~E~~------~~~~r~i~~Ik~-~--------G-----~kaGv~lnP 118 (220)
T COG0036 66 VHLMVENP---DRYI----EAFAKAGADIITFHAEAT------EHIHRTIQLIKE-L--------G-----VKAGLVLNP 118 (220)
T ss_pred EEEecCCH---HHHH----HHHHHhCCCEEEEEeccC------cCHHHHHHHHHH-c--------C-----CeEEEEECC
Confidence 34455555 2333 334456899999999821 245667777777 2 2 455666664
Q ss_pred CCCCCccchhhhhccccEEEeeecc
Q 040722 187 SPPANSYLLNSIQRNLNWVHAVTAS 211 (355)
Q Consensus 187 ~~~~~~~~~~~l~~~vD~v~lm~yd 211 (355)
..+.. .+.-+.+.+|+|.+||-+
T Consensus 119 ~Tp~~--~i~~~l~~vD~VllMsVn 141 (220)
T COG0036 119 ATPLE--ALEPVLDDVDLVLLMSVN 141 (220)
T ss_pred CCCHH--HHHHHHhhCCEEEEEeEC
Confidence 44433 244567889999999975
No 164
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=31.87 E-value=1.7e+02 Score=27.34 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeCCCC----------CcccchHHHHHHHHHHHHhh
Q 040722 118 KSFIDSSIRIARLYGFQGLDFAWTAPNT----------STDMFNVGLLFDEWRIAATK 165 (355)
Q Consensus 118 ~~fi~~l~~~l~~~~~DGididwe~~~~----------~~~~~~~~~~l~~l~~~~l~ 165 (355)
..+++.++..+.+-|+.||.+||..-.. ..+...+..++..+++ .+.
T Consensus 90 s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~-~~~ 146 (345)
T COG0429 90 SPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKA-RFP 146 (345)
T ss_pred CHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHH-hCC
Confidence 3599999999999999999999975332 2344667788888887 664
No 165
>PRK09810 entericidin A; Provisional
Probab=31.73 E-value=45 Score=20.66 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=7.7
Q ss_pred CchhHHHHHHHHHH
Q 040722 1 MASIIISIIFHTLL 14 (355)
Q Consensus 1 M~~~~~~~l~~~~~ 14 (355)
|++++++++++.++
T Consensus 1 mMkk~~~l~~~~~~ 14 (41)
T PRK09810 1 MMKRLIVLVLLAST 14 (41)
T ss_pred ChHHHHHHHHHHHH
Confidence 66666555544433
No 166
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=31.63 E-value=1.2e+02 Score=27.25 Aligned_cols=44 Identities=9% Similarity=0.164 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhh
Q 040722 121 IDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATK 165 (355)
Q Consensus 121 i~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~ 165 (355)
....++.+++.|||||+|....+........-..-++++++ .+.
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~-~~~ 55 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKA-IAE 55 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHH-HHH
Confidence 45677899999999999987544321111001245566666 554
No 167
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=31.59 E-value=1.8e+02 Score=26.32 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=46.9
Q ss_pred HHHHHhhCCC-cEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEE
Q 040722 80 VDTVEKENPS-ITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDF 138 (355)
Q Consensus 80 ~~~lk~~~p~-~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGidi 138 (355)
++.++...+. ..+++.=.||-. +...+.....++++++.|++++..-|+.-|+|=+.|
T Consensus 221 ~e~vqsa~g~~k~~~v~EtGWPS-~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~fvf 279 (305)
T COG5309 221 LERVQSACGTKKTVWVTETGWPS-DGRTYGSAVPSVANQKIAVQEILNALRSCGYDVFVF 279 (305)
T ss_pred HHHHHHhcCCCccEEEeeccCCC-CCCccCCcCCChhHHHHHHHHHHhhhhccCccEEEe
Confidence 3456666655 778888888876 667788888899999999999999999999886655
No 168
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=31.53 E-value=3.7e+02 Score=23.87 Aligned_cols=58 Identities=7% Similarity=0.042 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcC-CCeEEEEee
Q 040722 75 QIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYG-FQGLDFAWT 141 (355)
Q Consensus 75 ~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~-~DGididwe 141 (355)
........+++..+++++++++-.... ...| -.+++.|.++.. .+-..+ .|-|||++.
T Consensus 60 ~~~~~~~~l~~~~~~~PiI~T~R~~~e--GG~~---~~~~~~~~~ll~----~~~~~~~~d~vDiEl~ 118 (253)
T PRK02412 60 SVLAAAPAIREKFAGKPLLFTFRTAKE--GGEI---ALSDEEYLALIK----AVIKSGLPDYIDVELF 118 (253)
T ss_pred HHHHHHHHHHHhcCCCcEEEEECChhh--CCCC---CCCHHHHHHHHH----HHHhcCCCCEEEEecc
Confidence 334444566776678999999954322 1111 123444444433 333446 799999875
No 169
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=30.90 E-value=92 Score=28.55 Aligned_cols=118 Identities=11% Similarity=0.079 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeCCCC--CcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCCccch
Q 040722 118 KSFIDSSIRIARLYGFQGLDFAWTAPNT--STDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLL 195 (355)
Q Consensus 118 ~~fi~~l~~~l~~~~~DGididwe~~~~--~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~ 195 (355)
+-|-.++..+++.-..- +|-.-.|.- .++-.....++++.++ .+..++..... ..++-+.+-+|.. .+..
T Consensus 120 ~~f~~QlrAilra~~~g--~l~Im~PmV~~~~E~~~~~~~l~~~~~-~L~~~g~~~~~-~~~vG~MiEvPsa----al~~ 191 (293)
T PF02896_consen 120 ELFRTQLRAILRAAAEG--NLRIMFPMVSTVEEVREAKEILEEVKE-ELREEGIPFDP-DLPVGIMIEVPSA----ALMA 191 (293)
T ss_dssp HHHHHHHHHHHHHHHHS--EEEEEESS--SHHHHHHHHHHHHHHHH-HHHHHTCTTGT-T-EEEEEE-SHHH----HHTH
T ss_pred hhHHHHHHHHHHHHhhc--CCEEEecCCCcHHHHHHHHHHHHHHHH-HHHHhccCccc-cceEEEEechhHH----HHHH
Confidence 45666665555554322 555555653 2344455667777776 66654211100 2233333444322 3456
Q ss_pred hhhhccccEEEeeecccCCC-CC-CCCCCCCCcCCCCCCCCCcccHHHHHHHHH
Q 040722 196 NSIQRNLNWVHAVTASYYEP-VS-TNFTAPPAALYGSSSGGFARSTDQVLKAWI 247 (355)
Q Consensus 196 ~~l~~~vD~v~lm~yd~~~~-~~-~~~~~~~apl~~~~~~~~~~~~~~~v~~~~ 247 (355)
.++.+.+||+.+-|-|+..- .. .-.....+.+|++..+ .+.+.++..+
T Consensus 192 ~~~~~~~DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~P----avl~li~~vi 241 (293)
T PF02896_consen 192 DEFAKEVDFFSIGTNDLTQYTLAADRDNARVAYLYDPLHP----AVLRLIKQVI 241 (293)
T ss_dssp HHHHTTSSEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSH----HHHHHHHHHH
T ss_pred HHHHHHCCEEEEChhHHHHHHhhcCCCCcchhhhcCcchH----HHHHHHHHHH
Confidence 78889999999999887221 00 0111235556666653 4555555444
No 170
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=30.38 E-value=60 Score=31.51 Aligned_cols=55 Identities=7% Similarity=0.059 Sum_probs=39.1
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhh
Q 040722 108 SSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATK 165 (355)
Q Consensus 108 ~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~ 165 (355)
.+.+++..-|++.++.|+++|.++|||| -|....... .....|....|-|.. .++
T Consensus 97 pRplrdk~yqq~c~~~I~~yL~engfd~-pis~k~l~~-PS~k~F~~IFK~LY~-~lD 151 (622)
T COG5185 97 PRPLRDKNYQQACQEEIYDYLKENGFDI-PISIKFLKQ-PSQKGFIIIFKWLYL-RLD 151 (622)
T ss_pred CcccccchHHHHHHHHHHHHHHHcCCCc-chhHHHhcC-CccccHHHHHHHHHh-ccC
Confidence 4568889999999999999999999998 222111111 223467888888887 774
No 171
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=30.26 E-value=3.9e+02 Score=23.68 Aligned_cols=147 Identities=9% Similarity=0.107 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHH
Q 040722 75 QIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGL 154 (355)
Q Consensus 75 ~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~ 154 (355)
..+..++.+|+. ++++ +.||+- |..++ .+..++.-++.+++.|||.|+|.=-... -..+...+
T Consensus 42 ~l~eki~la~~~--~V~v--~~GGtl------~E~~~-----~q~~~~~Yl~~~k~lGf~~IEiS~G~~~--i~~~~~~r 104 (237)
T TIGR03849 42 IVKEKIEMYKDY--GIKV--YPGGTL------FEIAH-----SKGKFDEYLNECDELGFEAVEISDGSME--ISLEERCN 104 (237)
T ss_pred HHHHHHHHHHHc--CCeE--eCCccH------HHHHH-----HhhhHHHHHHHHHHcCCCEEEEcCCccC--CCHHHHHH
Confidence 455555544544 5655 466642 23333 3467788888999999999999733222 22234456
Q ss_pred HHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCC-CC-----ccchhhhhccccEEEeeecccCCCCCCCCCCCCCcCC
Q 040722 155 LFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPP-AN-----SYLLNSIQRNLNWVHAVTASYYEPVSTNFTAPPAALY 228 (355)
Q Consensus 155 ~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~-~~-----~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~apl~ 228 (355)
+++.+++..|+.. ..+..-.+.... .. ..--..|..=+|+|++.+-.-. -...+|
T Consensus 105 lI~~~~~~g~~v~----------~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg---------~~~Gi~ 165 (237)
T TIGR03849 105 LIERAKDNGFMVL----------SEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESG---------KNIGLF 165 (237)
T ss_pred HHHHHHhCCCeEe----------ccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcC---------CCccee
Confidence 6666664122211 011111110000 00 1111235567899998873210 001122
Q ss_pred CCCCCCCcccHHHHHHHHHHCCCCCCceEEeeec
Q 040722 229 GSSSGGFARSTDQVLKAWIERGLSADKLVMGLPF 262 (355)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~g~~~~Kl~lglp~ 262 (355)
.... ..-...+...+. .+|++||+.--|.
T Consensus 166 ~~~g----~~r~d~v~~i~~-~l~~eklifEAp~ 194 (237)
T TIGR03849 166 DEKG----NVKEDELDVLAE-NVDINKVIFEAPQ 194 (237)
T ss_pred CCCC----CCchHHHHHHHh-hCChhcEEEECCC
Confidence 2111 234445566666 4999999988774
No 172
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=29.89 E-value=1.4e+02 Score=26.36 Aligned_cols=76 Identities=18% Similarity=0.120 Sum_probs=46.3
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCC
Q 040722 108 SSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYS 187 (355)
Q Consensus 108 ~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~ 187 (355)
+-|+.+| .++++.+ .+.|.|=|-|+.|... .....+++.+|+ . + ....+++.|.
T Consensus 65 HLMv~~P---~~~i~~~----~~aGad~it~H~Ea~~-----~~~~~~i~~Ik~-~-----------G--~kaGlalnP~ 118 (229)
T PRK09722 65 HLMVTDP---QDYIDQL----ADAGADFITLHPETIN-----GQAFRLIDEIRR-A-----------G--MKVGLVLNPE 118 (229)
T ss_pred EEEecCH---HHHHHHH----HHcCCCEEEECccCCc-----chHHHHHHHHHH-c-----------C--CCEEEEeCCC
Confidence 3445555 3455443 3449999999988321 234567777776 2 2 3456666654
Q ss_pred CCCCccchhhhhccccEEEeeecc
Q 040722 188 PPANSYLLNSIQRNLNWVHAVTAS 211 (355)
Q Consensus 188 ~~~~~~~~~~l~~~vD~v~lm~yd 211 (355)
.... .+..+.+.+|+|.+|+-+
T Consensus 119 T~~~--~l~~~l~~vD~VLvMsV~ 140 (229)
T PRK09722 119 TPVE--SIKYYIHLLDKITVMTVD 140 (229)
T ss_pred CCHH--HHHHHHHhcCEEEEEEEc
Confidence 3332 345567789999999975
No 173
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.88 E-value=3.8e+02 Score=25.87 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=39.5
Q ss_pred CCcEEEEEEeCCCC--CCCcchhhhhcChhhHHHHHHHHHHHHHHcC--CC-eEEEEeeCCCCCcccchHHHHHHHHHH
Q 040722 88 PSITILLSIGQGMD--TNYSIYSSMVRNSSHRKSFIDSSIRIARLYG--FQ-GLDFAWTAPNTSTDMFNVGLLFDEWRI 161 (355)
Q Consensus 88 p~~kvllsiGg~~~--~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~--~D-Gididwe~~~~~~~~~~~~~~l~~l~~ 161 (355)
-|.++++-|||+.. .|+. +..-.+..-.++...+++....++.+ +| ...+-+ ..+-.+.-+|..|++++..
T Consensus 63 aGh~~ivLigd~ta~IgDps-Gk~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~--ns~w~~~~~y~~~l~~~g~ 138 (401)
T COG0162 63 AGHKPIVLIGDATAMIGDPS-GKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVN--NSDWLKKLNYLDFLRDVGK 138 (401)
T ss_pred CCCeEEEEecccceecCCCC-CCHHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEe--chHHhCcCCHHHHHHHHHh
Confidence 38999999999864 1221 22222233344455566666777666 45 233322 1112344678999998854
No 174
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]
Probab=29.78 E-value=4.6e+02 Score=24.32 Aligned_cols=101 Identities=11% Similarity=0.162 Sum_probs=54.1
Q ss_pred HHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHH
Q 040722 82 TVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRI 161 (355)
Q Consensus 82 ~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~ 161 (355)
.|++.- ++|-++.++..-. .+....-|+++..|+.. +-|...|..-..+.....+.+.+++|++
T Consensus 190 ~L~e~L-g~kkvlWL~~Gl~------------~D~TDgHiDtlarFv~p---~~iv~~~~dde~Dp~y~~~q~~~~~L~~ 253 (346)
T COG2957 190 KLKEYL-GAKKVLWLEYGLK------------NDDTDGHIDTLARFVAP---GEIVLSWCDDENDPHYAALQAMLEELKE 253 (346)
T ss_pred HHHHHh-CccEEEEccCCCc------------CCcccchhhhhhhhcCC---CeEEEEecCCCCChhHHHHHHHHHHHHh
Confidence 455544 7777777765422 12235678888888877 4578888644333333444455555554
Q ss_pred HHhhHHHhhccCCCCcEEEEEEecCCCCCC-ccchhhhhccccEEEe
Q 040722 162 AATKLEAKNSSRQQSQLILTARFLYSPPAN-SYLLNSIQRNLNWVHA 207 (355)
Q Consensus 162 ~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~-~~~~~~l~~~vD~v~l 207 (355)
.-+. . ++.+.| +.+|...... .-.-.-.+.|++|++.
T Consensus 254 -~~d~----~---G~~~~l-~~Lp~P~~~~~e~~~rL~aSY~NFlI~ 291 (346)
T COG2957 254 -LRDA----K---GRPLKL-HKLPIPKPVTDEDGERLPASYVNFLII 291 (346)
T ss_pred -cccc----C---CCeeEE-EEcCCCcccccccCCCCcccceeEEEe
Confidence 3222 2 344444 4444332221 1122334678888765
No 175
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=29.75 E-value=2.2e+02 Score=24.57 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=46.6
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC-CcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCC
Q 040722 112 RNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT-STDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPA 190 (355)
Q Consensus 112 ~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~-~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~ 190 (355)
-||++. .-+..++..+.+.|.|+|-|= ++ .-+..+...+++.+|+ ..+ .+..| .|.
T Consensus 5 iDP~k~-e~~~~ia~~v~~~gtDaI~VG----GS~gvt~~~~~~~v~~ik~-~~~----------lPvil---fp~---- 61 (205)
T TIGR01769 5 IDPEKS-DEIEKIAKNAKDAGTDAIMVG----GSLGIVESNLDQTVKKIKK-ITN----------LPVIL---FPG---- 61 (205)
T ss_pred cCCCcH-HHHHHHHHHHHhcCCCEEEEc----CcCCCCHHHHHHHHHHHHh-hcC----------CCEEE---ECC----
Confidence 356555 334447778889999999772 22 1355677888888887 542 22333 232
Q ss_pred CccchhhhhccccEEEeeec
Q 040722 191 NSYLLNSIQRNLNWVHAVTA 210 (355)
Q Consensus 191 ~~~~~~~l~~~vD~v~lm~y 210 (355)
+...+...+|.+.+|+-
T Consensus 62 ---~~~~i~~~aD~~~~~sl 78 (205)
T TIGR01769 62 ---NVNGLSRYADAVFFMSL 78 (205)
T ss_pred ---CccccCcCCCEEEEEEe
Confidence 23456788999988874
No 176
>PLN02334 ribulose-phosphate 3-epimerase
Probab=29.71 E-value=2.8e+02 Score=24.11 Aligned_cols=67 Identities=9% Similarity=0.087 Sum_probs=38.4
Q ss_pred HHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCCccchhhhhcc--c
Q 040722 125 IRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLNSIQRN--L 202 (355)
Q Consensus 125 ~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~--v 202 (355)
++.+.+.|.|||-++.|+ .. .+.....+++++. . +..+.+++.+.... -....+.+. +
T Consensus 81 ~~~~~~~gad~v~vH~~q-~~---~d~~~~~~~~i~~-~-------------g~~iGls~~~~t~~--~~~~~~~~~~~~ 140 (229)
T PLN02334 81 VPDFAKAGASIFTFHIEQ-AS---TIHLHRLIQQIKS-A-------------GMKAGVVLNPGTPV--EAVEPVVEKGLV 140 (229)
T ss_pred HHHHHHcCCCEEEEeecc-cc---chhHHHHHHHHHH-C-------------CCeEEEEECCCCCH--HHHHHHHhccCC
Confidence 444566799999888884 11 1233445555544 1 14556665432111 123455567 9
Q ss_pred cEEEeeecc
Q 040722 203 NWVHAVTAS 211 (355)
Q Consensus 203 D~v~lm~yd 211 (355)
|||.+|+..
T Consensus 141 Dyi~~~~v~ 149 (229)
T PLN02334 141 DMVLVMSVE 149 (229)
T ss_pred CEEEEEEEe
Confidence 999999864
No 177
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=29.66 E-value=79 Score=27.89 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCCeEEEEe
Q 040722 121 IDSSIRIARLYGFQGLDFAW 140 (355)
Q Consensus 121 i~~l~~~l~~~~~DGididw 140 (355)
+...++.+++.|||||+|.+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~ 35 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLF 35 (254)
T ss_pred HHHHHHHHHHcCCCEEEecC
Confidence 55667777888888888865
No 178
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=29.49 E-value=2.9e+02 Score=25.57 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=16.1
Q ss_pred HHHHHHHcCCCeEEEEeeCCC
Q 040722 124 SIRIARLYGFQGLDFAWTAPN 144 (355)
Q Consensus 124 l~~~l~~~~~DGididwe~~~ 144 (355)
.+..+.+.|+|+|||+.--|.
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~ 102 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPA 102 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCH
Confidence 344566789999999998774
No 179
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=29.30 E-value=1.1e+02 Score=25.35 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=28.7
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCC
Q 040722 111 VRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAP 143 (355)
Q Consensus 111 ~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~ 143 (355)
-.+++..++.|.|-+..|.+-|..|+.|-+|-|
T Consensus 144 ~k~~eik~kiIkNsinvlmtRGIrGlyiyaeDp 176 (191)
T COG3410 144 EKNQEIKEKIIKNSINVLMTRGIRGLYIYAEDP 176 (191)
T ss_pred hhCHHHHHHHHHHHHHHHHhcccceEEEEEeCH
Confidence 346778889999999999999999999999844
No 180
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=29.18 E-value=3e+02 Score=29.03 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhhCCCcE---EEEEE-eCCCCCCCc--ch----------------------------hhhhcChhhHHH
Q 040722 74 NQIAKFVDTVEKENPSIT---ILLSI-GQGMDTNYS--IY----------------------------SSMVRNSSHRKS 119 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~k---vllsi-Gg~~~~~~~--~~----------------------------~~~~~~~~~r~~ 119 (355)
..++.+++.+|+++|++| |+-++ |-|.+..+. .+ .--+-+|+....
T Consensus 390 ~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k~~~p~~spg~~~~~~d~a~d~i~~~G~glv~P~~~~~ 469 (865)
T PLN02982 390 SGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAKVVPARLSPGLDGTMNDLAVDKIVEGGIGLVHPSQAGD 469 (865)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcceEEecccCccccccCcchhhhheecCceeccCHHHHHH
Confidence 478889999999998665 44444 334321111 00 012345888899
Q ss_pred HHHHHHHHHHHcCCCeEEEEeeC
Q 040722 120 FIDSSIRIARLYGFQGLDFAWTA 142 (355)
Q Consensus 120 fi~~l~~~l~~~~~DGididwe~ 142 (355)
|-+.+-++|..-|+|||-+|-+.
T Consensus 470 FYd~~hsyLas~GVDgVKVDvQ~ 492 (865)
T PLN02982 470 FYDSMHSYLASVGITGVKVDVIH 492 (865)
T ss_pred HHHHHHHHHHHcCCCeEEEchhh
Confidence 99999999999999999999765
No 181
>PLN02161 beta-amylase
Probab=28.90 E-value=1.5e+02 Score=29.43 Aligned_cols=43 Identities=16% Similarity=0.012 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeCCC-C-----CcccchHHHHHHHHHH
Q 040722 118 KSFIDSSIRIARLYGFQGLDFAWTAPN-T-----STDMFNVGLLFDEWRI 161 (355)
Q Consensus 118 ~~fi~~l~~~l~~~~~DGididwe~~~-~-----~~~~~~~~~~l~~l~~ 161 (355)
++|..+| +.|+..|.|||-+|.-|-. + .-+...|.+|++.+|+
T Consensus 117 ~al~~~L-~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~ 165 (531)
T PLN02161 117 KALTVSL-KALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISE 165 (531)
T ss_pred HHHHHHH-HHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHH
Confidence 4444444 5668999999999954321 1 2467788899988887
No 182
>PRK14057 epimerase; Provisional
Probab=28.49 E-value=3.3e+02 Score=24.41 Aligned_cols=84 Identities=8% Similarity=0.069 Sum_probs=49.1
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCC
Q 040722 108 SSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYS 187 (355)
Q Consensus 108 ~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~ 187 (355)
+-|+.+| .++++.++ +.|.|=|-++.|-. ......++.+|+ .=.+ ..| +..+....+++.|.
T Consensus 81 HLMV~~P---~~~i~~~~----~aGad~It~H~Ea~------~~~~~~l~~Ir~-~G~k---~~~-~~~~~kaGlAlnP~ 142 (254)
T PRK14057 81 HLMVADQ---WTAAQACV----KAGAHCITLQAEGD------IHLHHTLSWLGQ-QTVP---VIG-GEMPVIRGISLCPA 142 (254)
T ss_pred EeeeCCH---HHHHHHHH----HhCCCEEEEeeccc------cCHHHHHHHHHH-cCCC---ccc-ccccceeEEEECCC
Confidence 3445455 34554444 45999999999933 235667777776 3100 000 01224567777755
Q ss_pred CCCCccchhhhhccccEEEeeecc
Q 040722 188 PPANSYLLNSIQRNLNWVHAVTAS 211 (355)
Q Consensus 188 ~~~~~~~~~~l~~~vD~v~lm~yd 211 (355)
.... .+..+.+.+|+|.+|+-+
T Consensus 143 Tp~e--~i~~~l~~vD~VLvMtV~ 164 (254)
T PRK14057 143 TPLD--VIIPILSDVEVIQLLAVN 164 (254)
T ss_pred CCHH--HHHHHHHhCCEEEEEEEC
Confidence 4332 344566789999999975
No 183
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=28.25 E-value=2.2e+02 Score=23.09 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcC
Q 040722 73 DNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYG 132 (355)
Q Consensus 73 ~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~ 132 (355)
...+..+++.+++++|..++++... ... .. ......+++.+.+.+++++
T Consensus 80 ~~~~~~li~~i~~~~p~~~i~~~~~-~~~--~~--------~~~~~~~~~~~~~~~~~~~ 128 (169)
T cd01831 80 TNAYVEFIEELRKRYPDAPIVLMLG-PML--FG--------PYGTEEEIKRVAEAFKDQK 128 (169)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEec-Ccc--cc--------ccccHHHHHHHHHHHHhcC
Confidence 3467888889999999998876532 211 10 0011456677777777765
No 184
>PLN00197 beta-amylase; Provisional
Probab=28.06 E-value=1.5e+02 Score=29.58 Aligned_cols=43 Identities=12% Similarity=-0.024 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeCCC-C-----CcccchHHHHHHHHHH
Q 040722 118 KSFIDSSIRIARLYGFQGLDFAWTAPN-T-----STDMFNVGLLFDEWRI 161 (355)
Q Consensus 118 ~~fi~~l~~~l~~~~~DGididwe~~~-~-----~~~~~~~~~~l~~l~~ 161 (355)
+.+..+| +.|+..|.|||-+|.-|-. . .-+...|.+|++-+|+
T Consensus 127 ~~l~~~L-~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~ 175 (573)
T PLN00197 127 KAMKASL-QALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKR 175 (573)
T ss_pred HHHHHHH-HHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHH
Confidence 4444444 4668999999999954322 1 2467788999988887
No 185
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=27.70 E-value=4.4e+02 Score=23.51 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHH-----HcCCCeEEEEeeCCCCC
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIAR-----LYGFQGLDFAWTAPNTS 146 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~-----~~~~DGididwe~~~~~ 146 (355)
....+...+.+|+ +.+++|+|==|--... .+....+ ++=|+.-..|-. .+++|||-|| |-|...
T Consensus 51 pd~~Y~~~i~~L~-~~~nv~vlGYV~T~Yg--~R~~~~V-------~~dI~~Y~~W~~~~~~~~~~vdGIFfD-E~p~~~ 119 (253)
T PF12138_consen 51 PDANYAAAIPRLN-SYANVRVLGYVHTSYG--SRPLSEV-------KADIDTYASWYGQSEDYGYRVDGIFFD-EAPNDY 119 (253)
T ss_pred CCHHHHHHHHHHH-hcCCCcEEEEEEcccc--CCCHHHH-------HHHHHHHhhccccccCCCcccceEEEe-cCCCcH
Confidence 3456776666664 5568998844422111 2222222 222333334433 2789999999 655442
Q ss_pred cccchHHHHHHHHHHHHhhH
Q 040722 147 TDMFNVGLLFDEWRIAATKL 166 (355)
Q Consensus 147 ~~~~~~~~~l~~l~~~~l~~ 166 (355)
.....+++|.+ ..+.
T Consensus 120 ----~~~~y~~~l~~-~vk~ 134 (253)
T PF12138_consen 120 ----ANLPYYQNLYN-YVKS 134 (253)
T ss_pred ----HHHHHHHHHHH-HHHh
Confidence 44556666666 5554
No 186
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=27.37 E-value=2e+02 Score=25.08 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=37.1
Q ss_pred EEEEEEeCCCCCCCcchhhhh-----------cChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHH
Q 040722 91 TILLSIGQGMDTNYSIYSSMV-----------RNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEW 159 (355)
Q Consensus 91 kvllsiGg~~~~~~~~~~~~~-----------~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l 159 (355)
++++.|||... ...|.+++ .+-....-=-+-+.+.+++.+.+-+-|||....+ .++..+..+++++
T Consensus 131 ~~~ig~GG~HY--apr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s~~~~a~id~K~l~~-~~r~~i~~~l~~~ 207 (213)
T PF04414_consen 131 PVAIGFGGGHY--APRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKSGADVAIIDWKSLKS-EDRRRIEELLEEL 207 (213)
T ss_dssp EEEEEE-S-TT---HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHCT-SEEEEETTTS-H-HHHHHHHHHHHHH
T ss_pred ceeEEecCccc--chhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHHHHHc
Confidence 99999999775 44444332 2211111012334555666689999999987765 6776666666665
Q ss_pred H
Q 040722 160 R 160 (355)
Q Consensus 160 ~ 160 (355)
.
T Consensus 208 g 208 (213)
T PF04414_consen 208 G 208 (213)
T ss_dssp T
T ss_pred C
Confidence 3
No 187
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=27.36 E-value=2.3e+02 Score=20.16 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=23.0
Q ss_pred HHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHH
Q 040722 126 RIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRI 161 (355)
Q Consensus 126 ~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~ 161 (355)
.+.++.|+|++-+-++-. .+.+..+++.+|.
T Consensus 17 ~~f~~~g~~~~Y~~~~v~-----~~~l~~~~~~~~~ 47 (83)
T PF08501_consen 17 AAFEALGLDAVYIPFEVE-----PEDLEDFLDALRA 47 (83)
T ss_dssp HHHHHTTSSEEEEEEETS-----TTCHHHHHHHHHH
T ss_pred HHHHHcCCCcEEEEeecC-----HHHHHHHHHHHhc
Confidence 356788999999988733 4467778887775
No 188
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.81 E-value=3.1e+02 Score=22.02 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEE
Q 040722 73 DNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDF 138 (355)
Q Consensus 73 ~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGidi 138 (355)
...+..+++.+++++|+.+|++.-- ... . ...-........+-+.+.++.+++++.=||+
T Consensus 71 ~~~l~~li~~~~~~~~~~~vi~~~~-~p~--~---~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~ 130 (169)
T cd01828 71 VANYRTILEKLRKHFPNIKIVVQSI-LPV--G---ELKSIPNEQIEELNRQLAQLAQQEGVTFLDL 130 (169)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEec-CCc--C---ccCcCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 3557777888888888888876411 110 0 0111233455667777777777777655554
No 189
>PRK13840 sucrose phosphorylase; Provisional
Probab=26.69 E-value=2e+02 Score=28.57 Aligned_cols=54 Identities=7% Similarity=-0.024 Sum_probs=34.6
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeEEEE-----eeCCCCC-cccchHHHHHHHHHHHHhhH
Q 040722 111 VRNSSHRKSFIDSSIRIARLYGFQGLDFA-----WTAPNTS-TDMFNVGLLFDEWRIAATKL 166 (355)
Q Consensus 111 ~~~~~~r~~fi~~l~~~l~~~~~DGidid-----we~~~~~-~~~~~~~~~l~~l~~~~l~~ 166 (355)
..||+-++.+.+ ++.+..+.|.||+-|| |+.+++. .....--.|++++|. .++.
T Consensus 166 ~~NP~V~~~i~~-il~fwl~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~-~~~~ 225 (495)
T PRK13840 166 VHSAAGWEYLMS-ILDRFAASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAK-EARA 225 (495)
T ss_pred CCCHHHHHHHHH-HHHHHHHCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHH-Hhhh
Confidence 457777777666 4555556799999999 3333331 112233569999998 7764
No 190
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=26.49 E-value=1.1e+02 Score=25.99 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHh
Q 040722 121 IDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAAT 164 (355)
Q Consensus 121 i~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l 164 (355)
++.+.+++.+.++|||.|.-.. + ..+++++|+ .+
T Consensus 62 ~~~i~~ia~~~~~d~Vqlhg~e-----~----~~~~~~l~~-~~ 95 (203)
T cd00405 62 LEEILEIAEELGLDVVQLHGDE-----S----PEYCAQLRA-RL 95 (203)
T ss_pred HHHHHHHHHhcCCCEEEECCCC-----C----HHHHHHHHh-hc
Confidence 5567777888999999997531 1 346778887 65
No 191
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=26.14 E-value=3.5e+02 Score=21.79 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=39.7
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEE-EeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEE
Q 040722 72 DDNQIAKFVDTVEKENPSITILLS-IGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFA 139 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvlls-iGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGidid 139 (355)
....+..+++.+++++|+.+|++. +--... ... ......+..+++.+.+.++.+++++.=||+.
T Consensus 73 ~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~---~~~-~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~ 137 (174)
T cd01841 73 FIKWYRDIIEQIREEFPNTKIYLLSVLPVLE---EDE-IKTRSNTRIQRLNDAIKELAPELGVTFIDLN 137 (174)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeeCCcCc---ccc-cccCCHHHHHHHHHHHHHHHHHCCCEEEEcH
Confidence 345678888889998899987643 321111 100 0111235667788888888888886666654
No 192
>PRK00865 glutamate racemase; Provisional
Probab=26.03 E-value=2.5e+02 Score=25.11 Aligned_cols=63 Identities=11% Similarity=0.157 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEee
Q 040722 72 DDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWT 141 (355)
Q Consensus 72 ~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe 141 (355)
--..+.-+ +.+++..|+..++- +| |...+..--.+++...+++..+++++.+.|.|.|.|.+-
T Consensus 14 GiGGLtvl-~~i~~~lp~~~~iY-~~-----D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCN 76 (261)
T PRK00865 14 GVGGLTVL-REIRRLLPDEHIIY-VG-----DTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACN 76 (261)
T ss_pred CccHHHHH-HHHHHHCCCCCEEE-Ee-----cCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 34445444 57888889886552 33 355566667788889999999999999999999999764
No 193
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=25.77 E-value=2.7e+02 Score=24.25 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=47.0
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCC
Q 040722 108 SSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYS 187 (355)
Q Consensus 108 ~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~ 187 (355)
+-|+.+| .+|++. +.+.|.|=|-++.|.. ....++++.+|+ . + ....+++.|.
T Consensus 64 HLMv~~p---~~~i~~----~~~~gad~i~~H~Ea~------~~~~~~l~~ik~-~-----------g--~k~GlalnP~ 116 (220)
T PRK08883 64 HLMVKPV---DRIIPD----FAKAGASMITFHVEAS------EHVDRTLQLIKE-H-----------G--CQAGVVLNPA 116 (220)
T ss_pred EeccCCH---HHHHHH----HHHhCCCEEEEcccCc------ccHHHHHHHHHH-c-----------C--CcEEEEeCCC
Confidence 3345455 345543 3446999999999832 235667777776 2 2 3455666644
Q ss_pred CCCCccchhhhhccccEEEeeecc
Q 040722 188 PPANSYLLNSIQRNLNWVHAVTAS 211 (355)
Q Consensus 188 ~~~~~~~~~~l~~~vD~v~lm~yd 211 (355)
.... .+..+.+.+|+|.+|+-+
T Consensus 117 Tp~~--~i~~~l~~~D~vlvMtV~ 138 (220)
T PRK08883 117 TPLH--HLEYIMDKVDLILLMSVN 138 (220)
T ss_pred CCHH--HHHHHHHhCCeEEEEEec
Confidence 3322 345667899999999975
No 194
>PLN02803 beta-amylase
Probab=25.74 E-value=2.1e+02 Score=28.55 Aligned_cols=43 Identities=12% Similarity=-0.078 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeCCC-C-----CcccchHHHHHHHHHH
Q 040722 118 KSFIDSSIRIARLYGFQGLDFAWTAPN-T-----STDMFNVGLLFDEWRI 161 (355)
Q Consensus 118 ~~fi~~l~~~l~~~~~DGididwe~~~-~-----~~~~~~~~~~l~~l~~ 161 (355)
+.+..+| +.|+..|.|||-+|.-|-. . .-+...|.+|++.+|+
T Consensus 107 ~~l~~~L-~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~ 155 (548)
T PLN02803 107 RAMNASL-MALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQK 155 (548)
T ss_pred HHHHHHH-HHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHH
Confidence 4444444 5668999999999954321 1 2467788899988887
No 195
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=25.53 E-value=3e+02 Score=23.51 Aligned_cols=64 Identities=14% Similarity=0.025 Sum_probs=35.8
Q ss_pred HHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCCccchhhhhccccEEE
Q 040722 127 IARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLNSIQRNLNWVH 206 (355)
Q Consensus 127 ~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~ 206 (355)
.+.+.|.|||-+.-+.. +....+++.++. . + ..+.+.+.+.... -....+...+||+.
T Consensus 79 ~~~~~g~d~v~vh~~~~------~~~~~~~~~~~~-~-----------~--~~~g~~~~~~t~~--e~~~~~~~~~d~i~ 136 (220)
T PRK05581 79 DFAKAGADIITFHVEAS------EHIHRLLQLIKS-A-----------G--IKAGLVLNPATPL--EPLEDVLDLLDLVL 136 (220)
T ss_pred HHHHcCCCEEEEeeccc------hhHHHHHHHHHH-c-----------C--CEEEEEECCCCCH--HHHHHHHhhCCEEE
Confidence 33477999988887632 223445555554 1 1 3444444322111 12455666799999
Q ss_pred eeeccc
Q 040722 207 AVTASY 212 (355)
Q Consensus 207 lm~yd~ 212 (355)
+|+.+.
T Consensus 137 ~~~~~~ 142 (220)
T PRK05581 137 LMSVNP 142 (220)
T ss_pred EEEECC
Confidence 998753
No 196
>PRK10426 alpha-glucosidase; Provisional
Probab=25.51 E-value=2.5e+02 Score=28.89 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhh----------------------------hhcChhhHHHHHHHHHH
Q 040722 75 QIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSS----------------------------MVRNSSHRKSFIDSSIR 126 (355)
Q Consensus 75 ~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~----------------------------~~~~~~~r~~fi~~l~~ 126 (355)
....+++.|+++ ++|+++.|--.-..++..|.. =+.||+.|+=+.+.+.+
T Consensus 270 dp~~mi~~L~~~--G~k~v~~i~P~v~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~ 347 (635)
T PRK10426 270 QLDSRIKQLNEE--GIQFLGYINPYLASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKK 347 (635)
T ss_pred CHHHHHHHHHHC--CCEEEEEEcCccCCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHH
Confidence 456788888887 899998874321101111111 15688999988888888
Q ss_pred HHHHcCCCeEEEEee
Q 040722 127 IARLYGFQGLDFAWT 141 (355)
Q Consensus 127 ~l~~~~~DGididwe 141 (355)
.+.+.|+||+=.|+.
T Consensus 348 ~~~~~Gvdg~w~D~~ 362 (635)
T PRK10426 348 NMIGLGCSGWMADFG 362 (635)
T ss_pred HHhhcCCCEEeeeCC
Confidence 999999999988874
No 197
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=25.37 E-value=2e+02 Score=24.28 Aligned_cols=65 Identities=11% Similarity=0.040 Sum_probs=36.2
Q ss_pred HHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCCccchhhhhccccE
Q 040722 125 IRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLNSIQRNLNW 204 (355)
Q Consensus 125 ~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~ 204 (355)
++.+.+.|.|||-+..+.. +....+++.++. . + ..+.+.+.+.... -.+.++...+||
T Consensus 73 ~~~~~~~g~dgv~vh~~~~------~~~~~~~~~~~~-~-----------~--~~~g~~~~~~~~~--~~~~~~~~~~d~ 130 (211)
T cd00429 73 IEAFAKAGADIITFHAEAT------DHLHRTIQLIKE-L-----------G--MKAGVALNPGTPV--EVLEPYLDEVDL 130 (211)
T ss_pred HHHHHHcCCCEEEECccch------hhHHHHHHHHHH-C-----------C--CeEEEEecCCCCH--HHHHHHHhhCCE
Confidence 4445588999998876522 223445555554 1 1 3444444322111 123445566899
Q ss_pred EEeeecc
Q 040722 205 VHAVTAS 211 (355)
Q Consensus 205 v~lm~yd 211 (355)
+.+++++
T Consensus 131 i~~~~~~ 137 (211)
T cd00429 131 VLVMSVN 137 (211)
T ss_pred EEEEEEC
Confidence 9999875
No 198
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=25.30 E-value=73 Score=16.98 Aligned_cols=20 Identities=20% Similarity=0.564 Sum_probs=16.4
Q ss_pred EEECCHHHHHHHHHHHHHcCC
Q 040722 328 FGFDDVEAVRAKIAYAKEKRL 348 (355)
Q Consensus 328 i~ydd~~S~~~K~~~~~~~gl 348 (355)
+.++ ..+++.+++|.++.|+
T Consensus 11 l~~~-~~~l~~~~~~l~~~g~ 30 (31)
T smart00733 11 LGYS-EKKLKPKVEFLKELGF 30 (31)
T ss_pred cccc-HHHhhHHHHHHHHcCC
Confidence 4556 9999999999997765
No 199
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=25.09 E-value=3.6e+02 Score=23.66 Aligned_cols=66 Identities=15% Similarity=0.267 Sum_probs=45.1
Q ss_pred CChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcch-----hh----hhcChhhHHHHHHHHHHHHHHcCCCeEEE
Q 040722 71 SDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIY-----SS----MVRNSSHRKSFIDSSIRIARLYGFQGLDF 138 (355)
Q Consensus 71 ~~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~-----~~----~~~~~~~r~~fi~~l~~~l~~~~~DGidi 138 (355)
+-.++++++++.+|...|..++++---+--+ .+.+ .. ..+..+.-..+++.+++..++-|+++||+
T Consensus 97 Ey~dNlr~iv~~lks~~~~~riIlitPpp~d--e~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdl 171 (245)
T KOG3035|consen 97 EYKDNLRKIVSHLKSLSPETRIILITPPPVD--EEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDL 171 (245)
T ss_pred HHHHHHHHHHHHhhccCCcceEEEecCCCcC--HHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeH
Confidence 3456677888888888888888765433322 2211 11 12344556778999999999999999999
No 200
>PF10829 DUF2554: Protein of unknown function (DUF2554); InterPro: IPR020117 This entry contains proteins with no known function.
Probab=25.00 E-value=64 Score=22.48 Aligned_cols=20 Identities=10% Similarity=-0.144 Sum_probs=16.2
Q ss_pred CchhHHHHHHHHHHHhccCC
Q 040722 1 MASIIISIIFHTLLYSELHP 20 (355)
Q Consensus 1 M~~~~~~~l~~~~~~~~~~~ 20 (355)
|.++.++++++++.+|+.+.
T Consensus 1 M~~k~lS~~lL~caLFSGql 20 (76)
T PF10829_consen 1 MFKKGLSALLLICALFSGQL 20 (76)
T ss_pred ChHHHHHHHHHHHHHhcchH
Confidence 78889999988877777665
No 201
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=24.88 E-value=2.9e+02 Score=20.75 Aligned_cols=61 Identities=8% Similarity=0.056 Sum_probs=35.1
Q ss_pred CCCCCCEEEEEEcCCC------CCCCCCCCCCCCcEEEE--------eeEEEeCCCcEEeeCCCCChhHHHHHHHHH
Q 040722 21 AKAKPWIRVGYLNLSK------VSTISGINYDLFTHLIC--------PSADINSTTYQLSLSLPSDDNQIAKFVDTV 83 (355)
Q Consensus 21 ~~~~~~~vvgy~~~~~------~~~~~~~~~~~~thii~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (355)
....+|.++.||.+.. .-+...|+...|+.|.- .+....++. ...+. .+.+.....+++++
T Consensus 24 ~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~dr-~f~l~-aese~E~~~Wi~~i 98 (101)
T cd01257 24 ESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKHRHLIALYTRDE-YFAVA-AENEAEQDSWYQAL 98 (101)
T ss_pred CCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccccCeEEEEEeCCc-eEEEE-eCCHHHHHHHHHHH
Confidence 3356688999998843 22344677888888853 333333432 44444 33555566666544
No 202
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=24.87 E-value=4.7e+02 Score=24.61 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=40.8
Q ss_pred HHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHH
Q 040722 79 FVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDE 158 (355)
Q Consensus 79 ~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~ 158 (355)
.++.+++. ++. -++||=... .+...+.+.-....+. +...++.+++.|++-|.+|+-+-...+..+.+...++.
T Consensus 101 ~l~~l~~~--G~~-rvsiGvqS~--~d~~L~~l~R~~~~~~-~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~ 174 (374)
T PRK05799 101 KLKILKSM--GVN-RLSIGLQAW--QNSLLKYLGRIHTFEE-FLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEK 174 (374)
T ss_pred HHHHHHHc--CCC-EEEEECccC--CHHHHHHcCCCCCHHH-HHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHH
Confidence 33455555 443 456665554 2333333332233333 44567788999998777777644322444555555555
Q ss_pred HHH
Q 040722 159 WRI 161 (355)
Q Consensus 159 l~~ 161 (355)
+.+
T Consensus 175 ~~~ 177 (374)
T PRK05799 175 VVE 177 (374)
T ss_pred HHh
Confidence 443
No 203
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=24.37 E-value=4.8e+02 Score=22.79 Aligned_cols=61 Identities=11% Similarity=0.225 Sum_probs=40.5
Q ss_pred CCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCC-------------cccchHH
Q 040722 87 NPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTS-------------TDMFNVG 153 (355)
Q Consensus 87 ~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~-------------~~~~~~~ 153 (355)
.+.-++++=|-|++. .| +.-+....++....+++|+-|-|-||... .....|.
T Consensus 15 ~~~~~vlvfVHGyn~----~f----------~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~ 80 (233)
T PF05990_consen 15 SPDKEVLVFVHGYNN----SF----------EDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALA 80 (233)
T ss_pred CCCCeEEEEEeCCCC----CH----------HHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHH
Confidence 458899999999874 12 23334444566677899999988888741 1123466
Q ss_pred HHHHHHHH
Q 040722 154 LLFDEWRI 161 (355)
Q Consensus 154 ~~l~~l~~ 161 (355)
.||++|++
T Consensus 81 ~~L~~L~~ 88 (233)
T PF05990_consen 81 RFLRDLAR 88 (233)
T ss_pred HHHHHHHh
Confidence 77777776
No 204
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=24.09 E-value=4.3e+02 Score=24.65 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhCCCcEEEEEE------eCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCC
Q 040722 76 IAKFVDTVEKENPSITILLSI------GQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPN 144 (355)
Q Consensus 76 ~~~~~~~lk~~~p~~kvllsi------Gg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~ 144 (355)
...+++.|+++ ++|+++.+ |.... ....|..+ .+++.|+=+ .+..+.+.+.|+||+=+|.-.|.
T Consensus 66 p~~mv~~L~~~--G~klv~~i~P~i~~g~~~~-~~~~~pDf-tnp~ar~wW-~~~~~~l~~~Gv~~~W~DmnEp~ 135 (332)
T cd06601 66 PKEMFDNLHNK--GLKCSTNITPVISYGGGLG-SPGLYPDL-GRPDVREWW-GNQYKYLFDIGLEFVWQDMTTPA 135 (332)
T ss_pred HHHHHHHHHHC--CCeEEEEecCceecCccCC-CCceeeCC-CCHHHHHHH-HHHHHHHHhCCCceeecCCCCcc
Confidence 46777888876 67877655 22111 23344443 478888866 44556666679999988875443
No 205
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=23.96 E-value=2.8e+02 Score=20.99 Aligned_cols=27 Identities=7% Similarity=0.254 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHhhCC-CcEEEEEEeCCCC
Q 040722 73 DNQIAKFVDTVEKENP-SITILLSIGQGMD 101 (355)
Q Consensus 73 ~~~~~~~~~~lk~~~p-~~kvllsiGg~~~ 101 (355)
......+++.+|+..| +++ +-+||...
T Consensus 64 ~~~~~~~i~~l~~~~~~~~~--i~vGG~~~ 91 (119)
T cd02067 64 MTLMKEVIEELKEAGLDDIP--VLVGGAIV 91 (119)
T ss_pred HHHHHHHHHHHHHcCCCCCe--EEEECCCC
Confidence 4556777788888876 554 55888653
No 206
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=23.93 E-value=4.4e+02 Score=23.21 Aligned_cols=88 Identities=1% Similarity=-0.102 Sum_probs=48.5
Q ss_pred CcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC-----------CcccchHHHHHH
Q 040722 89 SITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT-----------STDMFNVGLLFD 157 (355)
Q Consensus 89 ~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~-----------~~~~~~~~~~l~ 157 (355)
+.+++++|++.+. +.+ ..+...+.+ ++|+|||+.--|.. -.+.+....+++
T Consensus 67 ~~~vivnv~~~~~----------------ee~-~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~ 128 (231)
T TIGR00736 67 RALVSVNVRFVDL----------------EEA-YDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLT 128 (231)
T ss_pred cCCEEEEEecCCH----------------HHH-HHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHH
Confidence 5689999998532 122 223333444 69999999887762 124444555555
Q ss_pred HHHHHHhhHHHhhccCCCCcEEEEEEecCCCCC-Cccchh-hh-hccccEEEee
Q 040722 158 EWRIAATKLEAKNSSRQQSQLILTARFLYSPPA-NSYLLN-SI-QRNLNWVHAV 208 (355)
Q Consensus 158 ~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~-~~~~~~-~l-~~~vD~v~lm 208 (355)
.++. . +.-+++-+.+.... ...++. .+ ..-+|.+.|.
T Consensus 129 av~~-~-------------~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd 168 (231)
T TIGR00736 129 KMKE-L-------------NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD 168 (231)
T ss_pred HHHc-C-------------CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEe
Confidence 5554 2 14566666643221 111221 12 3458999883
No 207
>PLN02801 beta-amylase
Probab=23.89 E-value=2.4e+02 Score=27.98 Aligned_cols=42 Identities=12% Similarity=0.014 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCCeEEEEeeCCC-C-----CcccchHHHHHHHHHH
Q 040722 120 FIDSSIRIARLYGFQGLDFAWTAPN-T-----STDMFNVGLLFDEWRI 161 (355)
Q Consensus 120 fi~~l~~~l~~~~~DGididwe~~~-~-----~~~~~~~~~~l~~l~~ 161 (355)
-+++-++.|+..|.|||-+|.-+-. . .-+...|.+|++.+|+
T Consensus 38 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~ 85 (517)
T PLN02801 38 GLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQS 85 (517)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHH
Confidence 3444455788999999999953321 1 2467788899998887
No 208
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=23.89 E-value=94 Score=18.65 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=6.1
Q ss_pred CchhHHHHHHHHHH
Q 040722 1 MASIIISIIFHTLL 14 (355)
Q Consensus 1 M~~~~~~~l~~~~~ 14 (355)
|+.-++.+++.+|.
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 44444434444444
No 209
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.79 E-value=4.2e+02 Score=23.73 Aligned_cols=43 Identities=19% Similarity=0.085 Sum_probs=29.7
Q ss_pred CcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCCccchhhhhccccEEEeee
Q 040722 146 STDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLNSIQRNLNWVHAVT 209 (355)
Q Consensus 146 ~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~lm~ 209 (355)
|-....|.+|+++|+. ++. +|+.+- ..|+..+...+|++.+..
T Consensus 178 PI~a~~~~~LI~~L~~-~lg--------------~T~i~V------THDl~s~~~i~Drv~~L~ 220 (263)
T COG1127 178 PISAGVIDELIRELND-ALG--------------LTVIMV------THDLDSLLTIADRVAVLA 220 (263)
T ss_pred cchHHHHHHHHHHHHH-hhC--------------CEEEEE------ECChHHHHhhhceEEEEe
Confidence 3445678999999999 873 222222 237888889999986654
No 210
>PLN02705 beta-amylase
Probab=23.77 E-value=2.4e+02 Score=28.71 Aligned_cols=43 Identities=9% Similarity=-0.092 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeCCC------CCcccchHHHHHHHHHH
Q 040722 118 KSFIDSSIRIARLYGFQGLDFAWTAPN------TSTDMFNVGLLFDEWRI 161 (355)
Q Consensus 118 ~~fi~~l~~~l~~~~~DGididwe~~~------~~~~~~~~~~~l~~l~~ 161 (355)
+.+..+| +.|+..|.|||-+|.-|-. ..-+...|.+|++.+|+
T Consensus 268 ~al~a~L-~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~ 316 (681)
T PLN02705 268 EGVRQEL-SHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIRE 316 (681)
T ss_pred HHHHHHH-HHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHH
Confidence 4454454 4568899999999954321 12467788999988887
No 211
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=23.75 E-value=4.7e+02 Score=24.46 Aligned_cols=72 Identities=10% Similarity=0.020 Sum_probs=38.8
Q ss_pred HHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHH
Q 040722 81 DTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDE 158 (355)
Q Consensus 81 ~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~ 158 (355)
+.+++. ++. -+|||-... ++...+.+.-.... +=+...++.+++.||+-|.+|+-+-...++.+.+..-++.
T Consensus 102 ~~l~~~--Gvn-RiSiGvQS~--~~~~L~~lgR~~~~-~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~ 173 (350)
T PRK08446 102 KGMKNL--GVN-RISFGVQSF--NEDKLKFLGRIHSQ-KQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKL 173 (350)
T ss_pred HHHHHc--CCC-EEEEecccC--CHHHHHHcCCCCCH-HHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHH
Confidence 445555 444 456666554 23333334322333 3455567789999999888888753221333334433333
No 212
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=23.71 E-value=3.2e+02 Score=24.36 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHCCCCCCceEEe
Q 040722 237 RSTDQVLKAWIERGLSADKLVMG 259 (355)
Q Consensus 237 ~~~~~~v~~~~~~g~~~~Kl~lg 259 (355)
...++.++.+.+.|+++++|++-
T Consensus 150 ~~~~~~i~~~~~~Gi~~~~IilD 172 (258)
T cd00423 150 EFLEERVEAATEAGIPPEDIILD 172 (258)
T ss_pred HHHHHHHHHHHHcCCCHHHEEEe
Confidence 45667777788899999999986
No 213
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=23.42 E-value=6.2e+02 Score=23.70 Aligned_cols=67 Identities=13% Similarity=0.239 Sum_probs=38.9
Q ss_pred HHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcC--CCeEEEEeeCCCCCcccchHHHHHHH
Q 040722 81 DTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYG--FQGLDFAWTAPNTSTDMFNVGLLFDE 158 (355)
Q Consensus 81 ~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~--~DGididwe~~~~~~~~~~~~~~l~~ 158 (355)
+++|+..|++||++-+..... . ...+...+.++.+| ||=|-+.+ ||.-......+..-++.
T Consensus 161 ~AVr~~~p~~kV~lH~~~~~~------------~----~~~~~~f~~l~~~g~d~DviGlSy-YP~w~~~l~~l~~~l~~ 223 (332)
T PF07745_consen 161 KAVREVDPNIKVMLHLANGGD------------N----DLYRWFFDNLKAAGVDFDVIGLSY-YPFWHGTLEDLKNNLND 223 (332)
T ss_dssp HHHHTHSSTSEEEEEES-TTS------------H----HHHHHHHHHHHHTTGG-SEEEEEE--STTST-HHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEECCCCc------------h----HHHHHHHHHHHhcCCCcceEEEec-CCCCcchHHHHHHHHHH
Confidence 588889999999999876432 2 23333444444544 44444443 45443445667777777
Q ss_pred HHHHHhh
Q 040722 159 WRIAATK 165 (355)
Q Consensus 159 l~~~~l~ 165 (355)
|++ +++
T Consensus 224 l~~-ry~ 229 (332)
T PF07745_consen 224 LAS-RYG 229 (332)
T ss_dssp HHH-HHT
T ss_pred HHH-HhC
Confidence 777 774
No 214
>PLN02361 alpha-amylase
Probab=22.94 E-value=2.2e+02 Score=27.45 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=29.5
Q ss_pred cChhhHHHHHHHHHHHHH-HcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHh
Q 040722 112 RNSSHRKSFIDSSIRIAR-LYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAAT 164 (355)
Q Consensus 112 ~~~~~r~~fi~~l~~~l~-~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l 164 (355)
+++.-|+.+++.+ ++++ +.|+||+-+|.-.-.. ..|+++..+ +.
T Consensus 152 ~np~Vr~~l~~~~-~wl~~~~GiDGfRlDavk~~~-------~~f~~~~~~-~~ 196 (401)
T PLN02361 152 TQHFVRKDIIGWL-IWLRNDVGFQDFRFDFAKGYS-------AKFVKEYIE-AA 196 (401)
T ss_pred CCHHHHHHHHHHH-HHHHhcCCCCEEEEeccccCC-------HHHHHHHHH-hh
Confidence 3566677776665 5665 5999999999643322 557777776 54
No 215
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=22.83 E-value=1.7e+02 Score=28.38 Aligned_cols=52 Identities=15% Similarity=0.122 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHH-HHHHHHHhhHHHhhcc
Q 040722 120 FIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLF-DEWRIAATKLEAKNSS 172 (355)
Q Consensus 120 fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l-~~l~~~~l~~~~~~~g 172 (355)
.-++++.++-+.|+|=..|+|-.|.......++.+.+ ..|.+ +++......|
T Consensus 127 ~~~s~V~~l~~~g~~vfvIsw~nPd~~~~~~~~edYi~e~l~~-aid~v~~itg 179 (445)
T COG3243 127 PEKSLVRWLLEQGLDVFVISWRNPDASLAAKNLEDYILEGLSE-AIDTVKDITG 179 (445)
T ss_pred CCccHHHHHHHcCCceEEEeccCchHhhhhccHHHHHHHHHHH-HHHHHHHHhC
Confidence 3468899999999999999999998756667787777 55666 6666655555
No 216
>PF09839 DUF2066: Uncharacterized protein conserved in bacteria (DUF2066); InterPro: IPR018642 This entry represents a family of prokaryotic proteins with no known function.
Probab=22.67 E-value=3.7e+02 Score=23.56 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=46.6
Q ss_pred EEeeEEEeCCCcE-EeeCCCCChhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHH
Q 040722 52 ICPSADINSTTYQ-LSLSLPSDDNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARL 130 (355)
Q Consensus 52 i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~ 130 (355)
++.|+.++.+++. +-.. +.+......+....+.+ ++.+++-++.-.+ ...++-.+....|...|.+..+.
T Consensus 103 vLvWl~~~~~~~r~ll~~-~~~~~~~~~l~~~a~~r--Glpl~~Pl~Dl~D------~~~v~~~dvw~~f~~~i~~aS~R 173 (234)
T PF09839_consen 103 VLVWLVVDDGGGRRLLWE-DSDPWLRAWLRQAAKRR--GLPLVLPLMDLED------QMAVSASDVWGGFEEPIAAASQR 173 (234)
T ss_pred EEEEEEEecCCCceEeeC-CCCHHHHHHHHHHHHhC--CCceeecCCchhh------hhcCCHHHHhccCHHHHHHHHhc
Confidence 3344445554433 3333 33444455554444444 8999999887544 12233446667899999999999
Q ss_pred cCCCeE
Q 040722 131 YGFQGL 136 (355)
Q Consensus 131 ~~~DGi 136 (355)
|+-|.|
T Consensus 174 Y~ad~v 179 (234)
T PF09839_consen 174 YGADQV 179 (234)
T ss_pred cCCCcE
Confidence 997766
No 217
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=22.62 E-value=56 Score=28.92 Aligned_cols=85 Identities=18% Similarity=0.134 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcC--hhhHHHHHHHHHHHHHHcCCCeEEEEeeC------CCC
Q 040722 74 NQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYSSMVRN--SSHRKSFIDSSIRIARLYGFQGLDFAWTA------PNT 145 (355)
Q Consensus 74 ~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~--~~~r~~fi~~l~~~l~~~~~DGididwe~------~~~ 145 (355)
.-+.....+|+ ++.+.++.+.|..++..+..-..+.+ +.+..+|.+.++....--..||.++.-+. |..
T Consensus 105 e~y~~~~e~L~---~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~ 181 (323)
T KOG2702|consen 105 EFYPVKYEALT---SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQT 181 (323)
T ss_pred hhhHHHHHHhc---ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHH
Confidence 33444444444 46777877755443234555555556 67777899998885555678998876432 321
Q ss_pred ---------CcccchHHHHHHHHHH
Q 040722 146 ---------STDMFNVGLLFDEWRI 161 (355)
Q Consensus 146 ---------~~~~~~~~~~l~~l~~ 161 (355)
.-|...|..++|.|+.
T Consensus 182 AharRGapwTFD~~lfl~l~k~lkk 206 (323)
T KOG2702|consen 182 AHARRGAPWTFDSNLFLQLCKILKK 206 (323)
T ss_pred HHhhcCCCcccCHHHHHHHHHHHhh
Confidence 2466788888888886
No 218
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=22.38 E-value=6.2e+02 Score=24.09 Aligned_cols=84 Identities=8% Similarity=0.039 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHHHHHcC-CCeEEEEeeCCCCCcccchHH-HHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCC
Q 040722 114 SSHRKSFIDSSIRIARLYG-FQGLDFAWTAPNTSTDMFNVG-LLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPAN 191 (355)
Q Consensus 114 ~~~r~~fi~~l~~~l~~~~-~DGididwe~~~~~~~~~~~~-~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~ 191 (355)
++..+.+.+.|.+.+++-+ ++|+.|=-.--+ .....+. .+++.||+ .+. +...+++++-|.+...
T Consensus 79 ~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~G--GTGSG~gs~l~e~l~~-~y~----------~~~~~~~~v~P~~~~~ 145 (379)
T cd02190 79 HQYIDSILEKIRKAAEKCDSLQSFFILHSLGG--GTGSGLGTYVLELLAD-EFP----------EVYRFVTSVYPSADDD 145 (379)
T ss_pred hhHHHHHHHHHHHHHhhCcCcceEEEEeecCC--CcchhHHHHHHHHHHH-hcC----------ccceEEEeecCCCCCC
Confidence 4555667777777777654 789888544322 2223344 56777898 884 3357777665543221
Q ss_pred --------ccchhhhhccccEEEeeec
Q 040722 192 --------SYLLNSIQRNLNWVHAVTA 210 (355)
Q Consensus 192 --------~~~~~~l~~~vD~v~lm~y 210 (355)
..-+..|.+++|.+++.-.
T Consensus 146 ~~v~~yN~~lsl~~l~~~~d~~i~~~N 172 (379)
T cd02190 146 VITSPYNSVLALRELIEHADCVLPIEN 172 (379)
T ss_pred ceecccHHHHHHHHHHHhCCeeEEecc
Confidence 2346778889998877644
No 219
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.34 E-value=1.6e+02 Score=26.39 Aligned_cols=46 Identities=9% Similarity=-0.086 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCCeEEEEeeCCCCCccc-chHHHHHHHHHHHHhhHH
Q 040722 121 IDSSIRIARLYGFQGLDFAWTAPNTSTDM-FNVGLLFDEWRIAATKLE 167 (355)
Q Consensus 121 i~~l~~~l~~~~~DGididwe~~~~~~~~-~~~~~~l~~l~~~~l~~~ 167 (355)
....++.+++.|||||+|....+...-+. .....-++++++ .+.+.
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 64 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVN-AIIET 64 (279)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHH-HHHHc
Confidence 34556888999999999965432110011 112445666777 66644
No 220
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=22.23 E-value=87 Score=20.13 Aligned_cols=12 Identities=33% Similarity=0.470 Sum_probs=7.2
Q ss_pred CchhHHHHHHHH
Q 040722 1 MASIIISIIFHT 12 (355)
Q Consensus 1 M~~~~~~~l~~~ 12 (355)
|+++++.+++++
T Consensus 1 MmKk~i~~i~~~ 12 (48)
T PRK10081 1 MVKKTIAAIFSV 12 (48)
T ss_pred ChHHHHHHHHHH
Confidence 777766654444
No 221
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=22.18 E-value=3.9e+02 Score=22.90 Aligned_cols=91 Identities=7% Similarity=-0.109 Sum_probs=58.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCCeEEEEeeCC-CCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCCc
Q 040722 114 SSHRKSFIDSSIRIARLYGFQGLDFAWTAP-NTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANS 192 (355)
Q Consensus 114 ~~~r~~fi~~l~~~l~~~~~DGididwe~~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~ 192 (355)
+.....+...+.+.+++.+.+-+.||=-.+ ....+...+..++..|.. .+++. +.-..++...+.. ...
T Consensus 97 ~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~-~l~~~-------~~t~llt~~~~~~--~~~ 166 (226)
T PF06745_consen 97 PNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIK-FLKSR-------GVTTLLTSEMPSG--SED 166 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHH-HHHHT-------TEEEEEEEEESSS--SSS
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHH-HHHHC-------CCEEEEEEccccC--ccc
Confidence 345678999999999999999999992111 112445567788888888 77654 3334454443322 111
Q ss_pred cchhhhhc-cccEEEeeecccCC
Q 040722 193 YLLNSIQR-NLNWVHAVTASYYE 214 (355)
Q Consensus 193 ~~~~~l~~-~vD~v~lm~yd~~~ 214 (355)
.....+.. .+|-|+.+.+...+
T Consensus 167 ~~~~~i~~~l~D~vI~L~~~~~~ 189 (226)
T PF06745_consen 167 DGTFGIEHYLADGVIELRYEEEG 189 (226)
T ss_dssp SSSTSHHHHHSSEEEEEEEEEET
T ss_pred ccccchhhhcccEEEEEEEEeeC
Confidence 12234555 79999999887554
No 222
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=22.15 E-value=3.3e+02 Score=27.35 Aligned_cols=52 Identities=17% Similarity=0.023 Sum_probs=33.6
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCC-C---------------cccchHHHHHHHHHHHHhhH
Q 040722 113 NSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNT-S---------------TDMFNVGLLFDEWRIAATKL 166 (355)
Q Consensus 113 ~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~-~---------------~~~~~~~~~l~~l~~~~l~~ 166 (355)
+++-|+.+.+.+.-|+ +.|+||.-||--.... + .+......|++++|+ .++.
T Consensus 168 np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~ 235 (543)
T TIGR02403 168 NPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQ-EVFG 235 (543)
T ss_pred CHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHH-Hhhc
Confidence 5677776666555555 5799999999431110 0 122346789999998 7753
No 223
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=22.05 E-value=4.3e+02 Score=24.79 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=39.1
Q ss_pred HHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHH
Q 040722 81 DTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWR 160 (355)
Q Consensus 81 ~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~ 160 (355)
+.+++. ++. .++||=... +.+....+ .-....+. +...++.+++.|++-|.+|+-+-...+..+.+...++.+.
T Consensus 104 ~~l~~~--Gv~-risiGvqS~-~~~~l~~l-gR~~~~~~-~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~ 177 (360)
T TIGR00539 104 KGLKGA--GIN-RLSLGVQSF-RDDKLLFL-GRQHSAKN-IAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAK 177 (360)
T ss_pred HHHHHc--CCC-EEEEecccC-ChHHHHHh-CCCCCHHH-HHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHH
Confidence 345554 443 455555444 23333333 32233334 4456778889999988888775433244444444444443
No 224
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=21.88 E-value=4.9e+02 Score=25.43 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHH
Q 040722 121 IDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRI 161 (355)
Q Consensus 121 i~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~ 161 (355)
+...++.+++.|++.|.+|+-+-...+..+.+...++.+.+
T Consensus 190 ~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~ 230 (453)
T PRK13347 190 VARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIA 230 (453)
T ss_pred HHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHh
Confidence 45667788888998777776543322444445444444443
No 225
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=21.44 E-value=5.6e+02 Score=22.50 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCCccchhhhhc-c
Q 040722 123 SSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLNSIQR-N 201 (355)
Q Consensus 123 ~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~-~ 201 (355)
..++.+.+.|.||+-+--..+ +....+++.+|+ . + ....+.+.+..... .+..+.+ .
T Consensus 95 ~fi~~~~~aG~~giiipDl~~------ee~~~~~~~~~~-----~-------g--~~~i~~i~P~T~~~--~i~~i~~~~ 152 (242)
T cd04724 95 RFLRDAKEAGVDGLIIPDLPP------EEAEEFREAAKE-----Y-------G--LDLIFLVAPTTPDE--RIKKIAELA 152 (242)
T ss_pred HHHHHHHHCCCcEEEECCCCH------HHHHHHHHHHHH-----c-------C--CcEEEEeCCCCCHH--HHHHHHhhC
Confidence 344556677999999932211 133344444444 2 2 33444444332221 2445555 7
Q ss_pred ccEEEeeec
Q 040722 202 LNWVHAVTA 210 (355)
Q Consensus 202 vD~v~lm~y 210 (355)
.||+.+|+.
T Consensus 153 ~~~vy~~s~ 161 (242)
T cd04724 153 SGFIYYVSR 161 (242)
T ss_pred CCCEEEEeC
Confidence 899999986
No 226
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=21.29 E-value=3.9e+02 Score=25.83 Aligned_cols=79 Identities=9% Similarity=0.101 Sum_probs=49.7
Q ss_pred EEeCCCcEEeeCCCCChhHHHHHHHHHHhhCCCcEE-EEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCe
Q 040722 57 DINSTTYQLSLSLPSDDNQIAKFVDTVEKENPSITI-LLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQG 135 (355)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~~kv-llsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DG 135 (355)
.||.+||- . ...+..|..++..+.++. +... .+-+||... ++..|... ..++.+++-.+.+..+++. ||+=
T Consensus 49 QVdq~GGY---T-GmtP~dF~~~V~~iA~~~-gf~~~~iiLggDHl-GPn~Wq~~-pa~eAM~~A~~li~ayV~A-GF~k 120 (421)
T PRK15052 49 QVNQFGGY---T-GMTPADFREFVYGIADKV-GFPRERIILGGDHL-GPNCWQQE-PADAAMEKSVELVKAYVRA-GFSK 120 (421)
T ss_pred cccccCCc---C-CCCHHHHHHHHHHHHHHc-CCChhcEEeecCCC-CCccccCC-CHHHHHHHHHHHHHHHHHc-CCce
Confidence 46666532 2 446888888887555543 3332 445777665 56667665 3345566666666666665 9999
Q ss_pred EEEEeeCC
Q 040722 136 LDFAWTAP 143 (355)
Q Consensus 136 ididwe~~ 143 (355)
|+||--..
T Consensus 121 IHLD~Sm~ 128 (421)
T PRK15052 121 IHLDASMS 128 (421)
T ss_pred EEecCCCC
Confidence 99997544
No 227
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=21.28 E-value=2.6e+02 Score=23.57 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=37.9
Q ss_pred HHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCCCCCCccchhhhhccccE
Q 040722 125 IRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYSPPANSYLLNSIQRNLNW 204 (355)
Q Consensus 125 ~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~ 204 (355)
++.+.+.|.|||.++-+.+ .....+++.++. . +....+.+. +... .-.+.++...+|+
T Consensus 72 ~~~~~~~gadgv~vh~~~~------~~~~~~~~~~~~-~-----------g~~~~~~~~--~~t~--~e~~~~~~~~~d~ 129 (210)
T TIGR01163 72 IEDFAEAGADIITVHPEAS------EHIHRLLQLIKD-L-----------GAKAGIVLN--PATP--LEFLEYVLPDVDL 129 (210)
T ss_pred HHHHHHcCCCEEEEccCCc------hhHHHHHHHHHH-c-----------CCcEEEEEC--CCCC--HHHHHHHHhhCCE
Confidence 6666788999999965421 234556666655 2 223444433 2111 1134556667899
Q ss_pred EEeeecc
Q 040722 205 VHAVTAS 211 (355)
Q Consensus 205 v~lm~yd 211 (355)
+.+++.+
T Consensus 130 i~~~~~~ 136 (210)
T TIGR01163 130 VLLMSVN 136 (210)
T ss_pred EEEEEEc
Confidence 9998865
No 228
>PLN02899 alpha-galactosidase
Probab=21.25 E-value=2.5e+02 Score=28.60 Aligned_cols=56 Identities=11% Similarity=0.023 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEe
Q 040722 116 HRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARF 184 (355)
Q Consensus 116 ~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~ 184 (355)
.-++|.+++.+...+.|+|=|-+||-++.. .+... .+.+++ +|++. +++..+|+..
T Consensus 192 ~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~-~~~~e----y~~ms~-AL~aT-------GRPIvySLsp 247 (633)
T PLN02899 192 AGKAFLRSLYDQYAEWGVDFVKHDCVFGDD-FDLEE----ITYVSE-VLKEL-------DRPIVYSLSP 247 (633)
T ss_pred chhhhhHHHHHHHHHhCCCEEEEcCCCCCC-CChHH----HHHHHH-HHHHh-------CCCeEEEecC
Confidence 346899999999999999999999976532 22223 356777 77765 5678888873
No 229
>PLN03231 putative alpha-galactosidase; Provisional
Probab=21.23 E-value=3.3e+02 Score=25.82 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEe
Q 040722 115 SHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARF 184 (355)
Q Consensus 115 ~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~ 184 (355)
...+.+.+++++...+.|+|=|-+|+-+......... ++.+++ +|.+. +++..+|+..
T Consensus 159 ~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~----y~~m~~-AL~~t-------GRpIv~Slc~ 216 (357)
T PLN03231 159 EGGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDE----ILTVSK-AIRNS-------GRPMIYSLSP 216 (357)
T ss_pred hhHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHH----HHHHHH-HHHHh-------CCCeEEEecC
Confidence 3457799999999999999999999876543122222 456777 77665 5678888863
No 230
>COG5510 Predicted small secreted protein [Function unknown]
Probab=21.09 E-value=57 Score=20.40 Aligned_cols=12 Identities=25% Similarity=0.155 Sum_probs=5.8
Q ss_pred CchhHHHHHHHH
Q 040722 1 MASIIISIIFHT 12 (355)
Q Consensus 1 M~~~~~~~l~~~ 12 (355)
|+++++.+++++
T Consensus 1 mmk~t~l~i~~v 12 (44)
T COG5510 1 MMKKTILLIALV 12 (44)
T ss_pred CchHHHHHHHHH
Confidence 556654444443
No 231
>PLN02905 beta-amylase
Probab=21.02 E-value=2.3e+02 Score=28.86 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeCCC------CCcccchHHHHHHHHHH
Q 040722 118 KSFIDSSIRIARLYGFQGLDFAWTAPN------TSTDMFNVGLLFDEWRI 161 (355)
Q Consensus 118 ~~fi~~l~~~l~~~~~DGididwe~~~------~~~~~~~~~~~l~~l~~ 161 (355)
+.|..+| +.|+..|.|||-+|.-|-. ..-+...|.+|++.+|+
T Consensus 286 ~al~a~L-~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~ 334 (702)
T PLN02905 286 DGLLKQL-RILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRE 334 (702)
T ss_pred HHHHHHH-HHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHH
Confidence 4454444 4568899999999954321 12467788899988887
No 232
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.94 E-value=6.3e+02 Score=23.73 Aligned_cols=75 Identities=8% Similarity=0.104 Sum_probs=41.1
Q ss_pred HHHHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHH
Q 040722 80 VDTVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEW 159 (355)
Q Consensus 80 ~~~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l 159 (355)
++.+++. ++. .++||-... ++...+.+.-....+. +...++.+++.|++-|.+|+-+-...+..+.+..-++.+
T Consensus 106 l~~lk~~--G~n-risiGvQS~--~d~vL~~l~R~~~~~~-~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~ 179 (353)
T PRK05904 106 INLLKKN--KVN-RISLGVQSM--NNNILKQLNRTHTIQD-SKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFI 179 (353)
T ss_pred HHHHHHc--CCC-EEEEecccC--CHHHHHHcCCCCCHHH-HHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHH
Confidence 3456665 554 467776655 3333333433344444 446678888899987777765433224444454444444
Q ss_pred H
Q 040722 160 R 160 (355)
Q Consensus 160 ~ 160 (355)
.
T Consensus 180 ~ 180 (353)
T PRK05904 180 L 180 (353)
T ss_pred H
Confidence 3
No 233
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=20.90 E-value=3e+02 Score=23.24 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCC---eEEEEeeCCCCCcc-cchHHHHHHHHHH
Q 040722 121 IDSSIRIARLYGFQ---GLDFAWTAPNTSTD-MFNVGLLFDEWRI 161 (355)
Q Consensus 121 i~~l~~~l~~~~~D---Gididwe~~~~~~~-~~~~~~~l~~l~~ 161 (355)
++..++.++.++++ -+-||+|......+ ......|++++++
T Consensus 76 A~~f~~~~~~~~~~~~~~~~lD~E~~~~~~~~~~~~~~F~~~v~~ 120 (192)
T cd06522 76 ARYFANTAKSLGLSKNTVMVADMEDSSSSGNATANVNAFWQTMKA 120 (192)
T ss_pred HHHHHHHHHHcCCCCCCceEEEeecCCCcchHHHHHHHHHHHHHH
Confidence 34444556777664 25789997653111 2233556666655
No 234
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=20.65 E-value=83 Score=17.21 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=3.1
Q ss_pred chhHHHHH
Q 040722 2 ASIIISII 9 (355)
Q Consensus 2 ~~~~~~~l 9 (355)
.+|+++.+
T Consensus 7 mKkil~~l 14 (25)
T PF08139_consen 7 MKKILFPL 14 (25)
T ss_pred HHHHHHHH
Confidence 34443333
No 235
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=20.51 E-value=7.8e+02 Score=23.79 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=44.8
Q ss_pred HHHhhCCCcEEEEEEeCCCCCCCcchhhhhcChhhHHHHHHHHHHHHHHcCCCeEEEEeeCCCCCcccchHHHHHHHHHH
Q 040722 82 TVEKENPSITILLSIGQGMDTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAPNTSTDMFNVGLLFDEWRI 161 (355)
Q Consensus 82 ~lk~~~p~~kvllsiGg~~~~~~~~~~~~~~~~~~r~~fi~~l~~~l~~~~~DGididwe~~~~~~~~~~~~~~l~~l~~ 161 (355)
.+++. ++- -+|+|=+.. + ....+.+. ..+-...+...+..+++.||+-|+||.-|-.. .+....|.++|..
T Consensus 142 ~l~~~--GvN-RiSlGVQsf-~-~~~lk~lg-R~h~~~~~~~a~~~~~~~g~~~in~DLIyglP---~QT~~~~~~~l~~ 212 (416)
T COG0635 142 ALKEA--GVN-RISLGVQSF-N-DEVLKALG-RIHDEEEAKEAVELARKAGFTSINIDLIYGLP---GQTLESLKEDLEQ 212 (416)
T ss_pred HHHHc--CCC-EEEeccccC-C-HHHHHHhc-CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC---CCCHHHHHHHHHH
Confidence 34554 343 566666655 2 22333332 22223556777888888999999999976543 2355667777776
Q ss_pred HHhh
Q 040722 162 AATK 165 (355)
Q Consensus 162 ~~l~ 165 (355)
++.
T Consensus 213 -a~~ 215 (416)
T COG0635 213 -ALE 215 (416)
T ss_pred -HHh
Confidence 554
No 236
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=20.47 E-value=3.5e+02 Score=25.15 Aligned_cols=136 Identities=13% Similarity=0.164 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeeCCCC-----------CcccchHHHHHHHHHHHHhhHHHhhccCCCCcEEEEEEecCC
Q 040722 119 SFIDSSIRIARLYGFQGLDFAWTAPNT-----------STDMFNVGLLFDEWRIAATKLEAKNSSRQQSQLILTARFLYS 187 (355)
Q Consensus 119 ~fi~~l~~~l~~~~~DGididwe~~~~-----------~~~~~~~~~~l~~l~~~~l~~~~~~~g~~~~~~~ls~a~~~~ 187 (355)
........++...|+|+|||+.-=|.. -.+.+...++|+++++ +.. +-+..+-+.+...
T Consensus 79 ~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~-av~---------~iPVTVKiRlG~d 148 (323)
T COG0042 79 ELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVE-AVG---------DIPVTVKIRLGWD 148 (323)
T ss_pred HHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHH-hhC---------CCCeEEEEecccC
Confidence 455566778888899999999976653 1345566778888887 662 0224444444432
Q ss_pred CCC-Cccchh-hhhcc-ccEEEeeecc---cC-C--CCCC--C-CCCCC-CcCCCCCCCCCcccHHHHHHHHHHCCCCCC
Q 040722 188 PPA-NSYLLN-SIQRN-LNWVHAVTAS---YY-E--PVST--N-FTAPP-AALYGSSSGGFARSTDQVLKAWIERGLSAD 254 (355)
Q Consensus 188 ~~~-~~~~~~-~l~~~-vD~v~lm~yd---~~-~--~~~~--~-~~~~~-apl~~~~~~~~~~~~~~~v~~~~~~g~~~~ 254 (355)
... ...++. .+.+. +|.+.|.+=- .+ + .|+. . ..... -|+....+ -.+.+++.+.+...| .+
T Consensus 149 ~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGd---I~s~~~a~~~l~~tg--~D 223 (323)
T COG0042 149 DDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGD---IKSLEDAKEMLEYTG--AD 223 (323)
T ss_pred cccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCC---cCCHHHHHHHHHhhC--CC
Confidence 221 111222 23333 7777775421 11 1 1110 0 00001 33433333 346666666555444 56
Q ss_pred ceEEeeecceeeeee
Q 040722 255 KLVMGLPFYGYAWTL 269 (355)
Q Consensus 255 Kl~lglp~yG~~~~~ 269 (355)
-+.+|=..||.-|-+
T Consensus 224 gVMigRga~~nP~l~ 238 (323)
T COG0042 224 GVMIGRGALGNPWLF 238 (323)
T ss_pred EEEEcHHHccCCcHH
Confidence 677888888877743
No 237
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=20.30 E-value=3.6e+02 Score=22.03 Aligned_cols=64 Identities=16% Similarity=0.311 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEeCCCCCCCcchh--------hhhcChhhHHHHHHHHHHHHHHcCCCeEEE
Q 040722 73 DNQIAKFVDTVEKENPSITILLSIGQGMDTNYSIYS--------SMVRNSSHRKSFIDSSIRIARLYGFQGLDF 138 (355)
Q Consensus 73 ~~~~~~~~~~lk~~~p~~kvllsiGg~~~~~~~~~~--------~~~~~~~~r~~fi~~l~~~l~~~~~DGidi 138 (355)
...+..+++.+++++|+.++++.---... ...+. ......+..+.+.+.+.++.+++++.=||+
T Consensus 91 ~~~~~~~i~~~~~~~~~~~ii~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~iD~ 162 (199)
T cd01838 91 KENLRKIVSHLKSLSPKTKVILITPPPVD--EEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAEELGVPVIDL 162 (199)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEeCCCCCC--HHHHhhhhccccCCccccHHHHHHHHHHHHHHHHHhCCcEEEH
Confidence 34567788888888889998876321111 11111 112223445667777788888887665554
Done!