Query 040723
Match_columns 610
No_of_seqs 207 out of 648
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 11:06:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02305 lipoxygenase 100.0 1E-176 2E-181 1480.2 48.2 583 2-610 290-918 (918)
2 PLN02264 lipoxygenase 100.0 1E-175 3E-180 1471.4 47.9 582 2-610 294-919 (919)
3 PLN02337 lipoxygenase 100.0 3E-171 7E-176 1441.6 48.0 581 2-610 233-866 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 3E-160 7E-165 1350.8 23.6 563 2-594 63-667 (667)
5 PF10474 DUF2451: Protein of u 33.4 24 0.00052 36.3 1.7 24 392-421 178-201 (234)
6 PF12588 PSDC: Phophatidylseri 29.8 92 0.002 29.7 4.8 49 408-457 11-60 (141)
7 PF09545 RE_AccI: AccI restric 28.8 1.7E+02 0.0036 31.3 6.8 71 386-456 51-136 (366)
8 PF08153 NGP1NT: NGP1NT (NUC09 27.2 39 0.00085 31.8 1.8 26 540-565 33-60 (130)
9 PF10281 Ish1: Putative stress 27.1 1.1E+02 0.0023 22.3 3.8 31 411-450 5-35 (38)
10 KOG2675 Adenylate cyclase-asso 21.5 2.3E+02 0.0051 31.9 6.6 110 277-432 91-216 (480)
No 1
>PLN02305 lipoxygenase
Probab=100.00 E-value=1.1e-176 Score=1480.23 Aligned_cols=583 Identities=49% Similarity=0.907 Sum_probs=556.0
Q ss_pred CCCCCCC--CCCCCCCCCCC---CCccCCCCCCChhhhhhhhhhhHHHHHhhhhhhhhhhcCCCC-CCCCHHHHHHHhhc
Q 040723 2 FCNTFSE--RKPIGDENRAD---DIYVPRDEAFSDIKLAAFDSKKTYSFVSTLPTLIETKFDGDK-KFEYFTEIDELFDE 75 (610)
Q Consensus 2 ~~~~~~~--~~d~~~e~~~~---~~yvPrDe~f~~~k~~~f~~~~~~~~~~~~~~~l~~~~~~~~-~f~~f~di~~ly~~ 75 (610)
-|||||. +|||.||||.. .|||||||+|++.|.++|.+.++|+++|.++|.|+++++.++ +|+||+||++||+
T Consensus 290 R~RTGR~~t~~Dp~~Esr~~~~~~~YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~- 368 (918)
T PLN02305 290 RCRTGRPPTKKDPLCESRIEKPHPVYVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYN- 368 (918)
T ss_pred cCcCCCCCCCCCCcccccccCCCCcCCCCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhc-
Confidence 4999965 79999999964 579999999999999999999999999999999999998777 9999999999999
Q ss_pred CCCCCCCCc-chhhhhhhH-HHHHHHhhccccccccCchhhhhccccccceeechhhccCCCCCCccchHHHHHHHhhcC
Q 040723 76 DGFSIPPNL-NESIWNIIP-RWIRKIKETGEQYLQFETPEALHKEFNVEHIVIRVFFTFAGDKFFWFRDEEFARQTLARL 153 (610)
Q Consensus 76 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~W~~D~~FarQ~LaG~ 153 (610)
+|+.+|... ..+.+..+| .+++.+.++++.+||||+|+||+ .|+++|++|+|||||+|||+
T Consensus 369 ~g~~l~~~~~~~~~~~p~~~~~~~~i~~~~~~~lkf~~P~vi~-----------------~d~~~W~~DeeFaRQ~LaGv 431 (918)
T PLN02305 369 DGILLKTEEPKDIGLNPFLGNFMKQVLSVSERLLKYDIPAVIK-----------------RDRFAWLRDNEFARQALAGV 431 (918)
T ss_pred cCCcCCchhhhhhhcCCchHHHHHHhhhcccccccCCCcceee-----------------cccccccChHHHHHHHHcCC
Confidence 999999853 223332133 78888888899999999999998 89999999999999999999
Q ss_pred CccchhhhH------------------------------------hhhcCceEEEcccccccchhhhccCCCchhhhccc
Q 040723 154 NPCSIQLIT------------------------------------AIQQKKLFILDYHDLFLPYVEKVRHIEDEDEALKT 197 (610)
Q Consensus 154 NP~~I~~~~------------------------------------al~~grLfi~Dy~~~~lp~~~~~~~~~g~~~~~~~ 197 (610)
||++|++|+ ||++|||||+||||++|||+.++|.+++ +
T Consensus 432 NP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G~TleeAl~~~rLFIlDy~dl~lp~l~~in~l~~------~ 505 (918)
T PLN02305 432 NPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEGMTVEKAIEEKRLFILDYHDMLLPFIEKMNSLPE------R 505 (918)
T ss_pred CChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCCCcHHHHHHcCCEEEEechhhhCcccccccccCC------c
Confidence 999999998 8899999999999999999989999888 8
Q ss_pred ccccceeEEEeCCCCcceeEEEEecCCCCCCCCCcceeeeCCCCCCCchHHHHHHHHHHhhhhhhHHHHHhhhhccchhh
Q 040723 198 TLYGSRTIFFLNPDDTLRPVAIELTRPPMDGKPFWRKVYTPSWNSTDSWLWRLAKAHVLAHDAGYHQLVSHWLSTHCVVE 277 (610)
Q Consensus 198 ~~yAp~~Lffl~~~g~L~PiAIqL~~~~~~~~~~~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~Hqli~Hll~THlv~E 277 (610)
+.|||+||||++++|+|+||||||+++++++++..++||||.++++++|.|+|||+||++||+++||+++||++||++||
T Consensus 506 ~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP~~d~~~~w~W~LAK~~V~~aD~~~HQlisHlLrTHlv~E 585 (918)
T PLN02305 506 KAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHACME 585 (918)
T ss_pred ccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCCCCCCCCchHHHHHHHHHHhccHHHHHHHHHHhhHHHHHH
Confidence 89999999999999999999999999988776777889999876678899999999999999999999999999999999
Q ss_pred HHHHHHhccCCcccchhhcccccchhhhcchHHHhhccccCCcccccccCCchhHHHHHHHHHhccCCCCccccchHHHh
Q 040723 278 PYVIATNRQLSVIHPIYRLLHPHFRYTVEINAFARKDLVNAGGIIESTFSPGKYSMELSSVAYDKQWRFDHEALPKNLIS 357 (610)
Q Consensus 278 pf~vAt~R~Ls~~HPv~kLL~PH~r~tl~IN~~Ar~~LI~~gG~id~~~~~g~~~~el~~~~y~~~w~f~~~~lP~dL~~ 357 (610)
||+|||+||||.+|||||||.||||+||+||++||++||++||++|++|++|+++++|++++|++.|+|++++||+||++
T Consensus 586 pfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiie~~fspg~~~~elss~aYk~~w~Fd~~~LP~DL~k 665 (918)
T PLN02305 586 PYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEACFSPGKYAMELSSAAYKSMWRFDMEALPADLIR 665 (918)
T ss_pred HHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCceeeeeccchhHHHHHHHHHHhcCcCccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997899999999999999
Q ss_pred cCCCCCCCCCCCCccccccCCccchhhHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHhhcCCCCCCCCCCC
Q 040723 358 RRMAAEDPCSPHGLKLTIEDYPYAKDGLDLWDILKKWVTDYVNHYYPNQSLVESDEELQAWWTEIRTVGHGDKEDEPWWP 437 (610)
Q Consensus 358 RG~~~~D~~~~~g~~~~lp~YpYrdDgl~iW~AI~~~V~~yv~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~d~~~~~~~p 437 (610)
|||+++|+++|||+++.|||||||||||+||+||++||++||++||++|++|++|.|||+||+||+++||+|+++.+|||
T Consensus 666 RGva~~D~~~p~gl~l~ipdYPYrdDGL~IW~AIk~wV~~yV~~YY~~D~~V~~D~ELQaW~~Ei~~~Gh~d~kd~~~~p 745 (918)
T PLN02305 666 RGMAEEDPSMPCGVRLVIEDYPYAADGLLIWSAIKEWVESYVDHFYSEPNSITSDLELQAWWDEIKNKGHYDKRNEPWWP 745 (918)
T ss_pred cCCCccCCCCcccccccCCCCchhhhhHHHHHHHHHHHHHHHHhhCCChhhhccCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHhhhhhccccccccccccccccccccCCCccccCCCCCCCCCChhHHhhhccCchHHHhccCCChHHHH
Q 040723 438 VLKTPQDLIETITTIIWVTSGQHAAVNFGQYTYAGYFPNRPAITRLNMPDEDKSNEIWKIFNEKPDNALLHTFPNPTQAT 517 (610)
Q Consensus 438 ~i~t~~~Lv~~lT~iIf~aS~qHAAVNfgQ~~~~gf~Pn~P~~lr~p~P~~~Kg~~~~~~~~~~~e~~~l~~LP~~~~a~ 517 (610)
+|+|+++||++||+|||+||+||||||||||+|+||+||+|++||++||++ +..++++|+.+||+++|++||++.||+
T Consensus 746 ~l~T~~eLi~~lT~IIwtaSaqHAAVNFgQydy~gfvPN~P~~~Rrp~P~~--~~~~~~~l~~~pe~~~L~tLP~~~qa~ 823 (918)
T PLN02305 746 KLNTKEDLSGILTTMIWIASGQHAAINFGQYPFGGYVPNRPTLMRKLIPQE--NDPDYEKFIRNPQYTFLSSLPTQLQAT 823 (918)
T ss_pred CCcCHHHHHHHHHhhhhhcchhhhhhhcCCcccccccCCCchhhcCCCCCC--CCchHHHhhhChHHHHHHHCCcHHHHH
Confidence 999999999999999999999999999999999999999999999999988 567899999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcccccCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCccCCceeecCCC
Q 040723 518 KVMLILSLLSCHSPDEEFLGKDMEP--AWGEDPEIKVAFEEFRGRLMELEGTINERNGDINLKNRNGAGVVPYNLLKPFW 595 (610)
Q Consensus 518 ~~m~~~~~LS~~~~de~yLG~~~~~--~~~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~lk~r~~~~~~PY~~L~Ps~ 595 (610)
.+|+++++||.|++||+|||++.+. .|+.|+++++|+++|+++|++||++|++||++++||||+||+++||+||+|++
T Consensus 824 ~~mav~~iLS~hs~de~yLG~~~~~~~~w~~D~~~~~A~~rF~~~L~eIE~~I~~RN~~~~lkNR~G~~~~PY~lL~P~s 903 (918)
T PLN02305 824 KVMAVQDTLSTHSPDEEYLGELRHLHSHWINDHEVVKLFNKFSARLEEIEKTINERNKDIRLKNRNGAGIPPYELLLPTS 903 (918)
T ss_pred HHHHHHHHhccCCCCcccccCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCCCCccccCCCC
Confidence 9999999999999999999999875 79999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCccccC
Q 040723 596 KDGDKEKGVPYSISI 610 (610)
Q Consensus 596 ~~g~t~~~IpnSIsI 610 (610)
+||||||||||||||
T Consensus 904 ~~G~T~rgIPNSISI 918 (918)
T PLN02305 904 GPGVTGRGIPNSISI 918 (918)
T ss_pred CCCCCcCCCCCcccC
Confidence 999999999999998
No 2
>PLN02264 lipoxygenase
Probab=100.00 E-value=1.4e-175 Score=1471.45 Aligned_cols=582 Identities=45% Similarity=0.868 Sum_probs=555.2
Q ss_pred CCCCCCC--CCCCCCCCCCC---CCccCCCCCCChhhhhhhhhhhHHHHHhhhhhhhhhhcCCCCCCCCHHHHHHHhhcC
Q 040723 2 FCNTFSE--RKPIGDENRAD---DIYVPRDEAFSDIKLAAFDSKKTYSFVSTLPTLIETKFDGDKKFEYFTEIDELFDED 76 (610)
Q Consensus 2 ~~~~~~~--~~d~~~e~~~~---~~yvPrDe~f~~~k~~~f~~~~~~~~~~~~~~~l~~~~~~~~~f~~f~di~~ly~~~ 76 (610)
-|||||. +|||.+|||.. .|||||||+|++.|.++|.+.++|+++|.++|.++++++.+ +|+||+||++||. +
T Consensus 294 R~RTGR~~t~~dp~~Esr~~~~~~iYvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~-~F~~f~~i~~Ly~-~ 371 (919)
T PLN02264 294 RCRTGRLPTDSDMMAESRVEKPLPMYVPRDEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE-DFANFGEIDSLYK-E 371 (919)
T ss_pred CCcCCCCCCCCCCcccccccCCCceeCCCCCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC-CCCCHHHHHHHHh-c
Confidence 4999965 79999999964 57999999999999999999999999999999999998765 9999999999999 9
Q ss_pred CCCCCCCc-chhhhhh-hHHHHHHHhhccccccccCchhhhhccccccceeechhhccCCCCCCccchHHHHHHHhhcCC
Q 040723 77 GFSIPPNL-NESIWNI-IPRWIRKIKETGEQYLQFETPEALHKEFNVEHIVIRVFFTFAGDKFFWFRDEEFARQTLARLN 154 (610)
Q Consensus 77 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~W~~D~~FarQ~LaG~N 154 (610)
|+.+|... +...+.+ +|.+++.+.++++.+||||+|++|+ .|+++|++|+|||||+|||+|
T Consensus 372 g~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~lkf~~P~vi~-----------------~d~~~W~~DeeFarQ~LaGvN 434 (919)
T PLN02264 372 GLLLKLGFQDDIFKKFPLPKVVTTLQESSEGLLKYDTPKILS-----------------KDKFAWLRDDEFARQAIAGIN 434 (919)
T ss_pred CCcCCcchhhhHhhcCChHHHHHHhhhcccccccCCCCceee-----------------cChhhccCHHHHHHHHHcCCC
Confidence 99999853 2233334 5588888888899999999999998 899999999999999999999
Q ss_pred ccchhhhH------------------------------------hhhcCceEEEcccccccchhhhccCCCchhhhcccc
Q 040723 155 PCSIQLIT------------------------------------AIQQKKLFILDYHDLFLPYVEKVRHIEDEDEALKTT 198 (610)
Q Consensus 155 P~~I~~~~------------------------------------al~~grLfi~Dy~~~~lp~~~~~~~~~g~~~~~~~~ 198 (610)
|++|++|+ ||++|||||+||||++|||++++|.++| ++
T Consensus 435 P~~I~rl~e~P~~s~ld~~~yg~~~s~it~e~v~~~L~G~Tl~eAl~~~rLFilDy~d~~lp~l~~in~~~g------~~ 508 (919)
T PLN02264 435 PVNIERVKVFPPVSNLDPEIYGPQHSALTEDHIIGHLDGLSVQQALEENRLFMVDYHDIYLPFLDRINALDG------RK 508 (919)
T ss_pred chhhhhhhhcCCCCCCCHhhcCCccchhhHHHHhhccCCCcHHHHHHcCCEEEEeChhhhhhhhhhhccCCC------cE
Confidence 99999998 8899999999999999999999999888 88
Q ss_pred cccceeEEEeCCCCcceeEEEEecCCCCCCCCCcceeeeCCCCCCCchHHHHHHHHHHhhhhhhHHHHHhhhhccchhhH
Q 040723 199 LYGSRTIFFLNPDDTLRPVAIELTRPPMDGKPFWRKVYTPSWNSTDSWLWRLAKAHVLAHDAGYHQLVSHWLSTHCVVEP 278 (610)
Q Consensus 199 ~yAp~~Lffl~~~g~L~PiAIqL~~~~~~~~~~~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~Hqli~Hll~THlv~Ep 278 (610)
.|||+||||++++|+|+||||||+++++++++..++||||.++++++|.|+|||+||++||+++||+++||++||+++||
T Consensus 509 ~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~~~~~~VftP~~d~~~~w~W~LAK~~V~~aD~~~HQlisHllrTHlv~Ep 588 (919)
T PLN02264 509 AYATRTIFFLTRLGTLKPIAIELSLPPSGPNSRSKRVVTPPVDATSNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACLEP 588 (919)
T ss_pred eEcceEEEEECCCCCEeeEEEEecCCCCCCCcCcceeECCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh
Confidence 99999999999999999999999999876666678999997666788999999999999999999999999999999999
Q ss_pred HHHHHhccCCcccchhhcccccchhhhcchHHHhhccccCCcccccccCCchhHHHHHHHHHhccCCCCccccchHHHhc
Q 040723 279 YVIATNRQLSVIHPIYRLLHPHFRYTVEINAFARKDLVNAGGIIESTFSPGKYSMELSSVAYDKQWRFDHEALPKNLISR 358 (610)
Q Consensus 279 f~vAt~R~Ls~~HPv~kLL~PH~r~tl~IN~~Ar~~LI~~gG~id~~~~~g~~~~el~~~~y~~~w~f~~~~lP~dL~~R 358 (610)
|+|||+||||.+|||||||.||||+||+||++||+.||++||++|++|++|+++++|++.+|++.|+|++++||+||++|
T Consensus 589 fiIAt~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiid~~f~pg~~~~elss~aYk~~W~F~~~~LP~DL~~R 668 (919)
T PLN02264 589 FILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQTLISADGVIESCFTAGQYGMEISAAAYKNSWRFDMEGLPADLIRR 668 (919)
T ss_pred hhhhhcccCCccCcHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeeccchhHHHHHHHHHHhccCCccccCHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999966999999999999999
Q ss_pred CCCCCCCCCCCCccccccCCccchhhHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 040723 359 RMAAEDPCSPHGLKLTIEDYPYAKDGLDLWDILKKWVTDYVNHYYPNQSLVESDEELQAWWTEIRTVGHGDKEDEPWWPV 438 (610)
Q Consensus 359 G~~~~D~~~~~g~~~~lp~YpYrdDgl~iW~AI~~~V~~yv~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~d~~~~~~~p~ 438 (610)
||+++|++++||+++.|||||||||||+||+||++||++||++||++|++|++|.|||+||+||++.||+++++.+|||+
T Consensus 669 Gv~~~D~~~phgl~l~ipdYPYrdDGL~iW~AIk~~V~~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~Gh~d~~d~~~~p~ 748 (919)
T PLN02264 669 GMAVPDPTQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYPDPSLICTDKELQAWYSESINVGHADLRDADWWPK 748 (919)
T ss_pred CCCCCCcccccchhhccCCCcchhhHHHHHHHHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHhccCCCCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhhhhhccccccccccccccccccccCCCccccCCCCCCCCCChhHHhhhccCchHHHhccCCChHHHHH
Q 040723 439 LKTPQDLIETITTIIWVTSGQHAAVNFGQYTYAGYFPNRPAITRLNMPDEDKSNEIWKIFNEKPDNALLHTFPNPTQATK 518 (610)
Q Consensus 439 i~t~~~Lv~~lT~iIf~aS~qHAAVNfgQ~~~~gf~Pn~P~~lr~p~P~~~Kg~~~~~~~~~~~e~~~l~~LP~~~~a~~ 518 (610)
|+|+++||++||+|||+||+||||||||||+|+||+||+|++||+|||++ |..+|++|+.+|++++|++||++.||+.
T Consensus 749 l~T~~eLi~~lT~IIf~aSaqHAAVNFgQydy~gfvPN~P~~~rrp~P~~--~~~e~~~~~~~pe~~~L~tlP~~~qt~~ 826 (919)
T PLN02264 749 LSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDE--SDPEYASFLADPQKYYFSSMPSLLQTTK 826 (919)
T ss_pred CCCHHHHHHHHHHHHHhhhhhhhhhhcCcccccccCCCCChHhcCCCCCC--CChhhhhhhcChHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999988 5678999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcccccCCCCC-CCCCcHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCccCCceeecCCCCC
Q 040723 519 VMLILSLLSCHSPDEEFLGKDMEP-AWGEDPEIKVAFEEFRGRLMELEGTINERNGDINLKNRNGAGVVPYNLLKPFWKD 597 (610)
Q Consensus 519 ~m~~~~~LS~~~~de~yLG~~~~~-~~~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~lk~r~~~~~~PY~~L~Ps~~~ 597 (610)
+|+++++||+|++||+|||++..+ .|+.|+++++|+++|+++|++||++|++||++++||||+||+++||+||+|+++|
T Consensus 827 ~ms~~~iLS~hs~dE~yLG~~~~~~~w~~D~~~~~af~rF~~~L~eIe~~I~~RN~~~~~knR~G~~~~PY~lL~P~s~~ 906 (919)
T PLN02264 827 FMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFSAEIGRIEKEIEKRNADPSRRNRCGAGVLPYELLAPSSEP 906 (919)
T ss_pred HHHHHHHHhhcCCCceeccCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCCCCceeeCCCCCC
Confidence 999999999999999999998765 7999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCccccC
Q 040723 598 GDKEKGVPYSISI 610 (610)
Q Consensus 598 g~t~~~IpnSIsI 610 (610)
|||||||||||||
T Consensus 907 G~T~~gIPNSISI 919 (919)
T PLN02264 907 GVTCRGVPNSVSI 919 (919)
T ss_pred CCCcCCCCCcccC
Confidence 9999999999998
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=3e-171 Score=1441.57 Aligned_cols=581 Identities=46% Similarity=0.843 Sum_probs=547.7
Q ss_pred CCCCCCC--CCCCCCCCCCC----CCccCCCCCCChhhhhhhhhhhHHHHHhhhhhhhhhhcCCCC-CCCCHHHHHHHhh
Q 040723 2 FCNTFSE--RKPIGDENRAD----DIYVPRDEAFSDIKLAAFDSKKTYSFVSTLPTLIETKFDGDK-KFEYFTEIDELFD 74 (610)
Q Consensus 2 ~~~~~~~--~~d~~~e~~~~----~~yvPrDe~f~~~k~~~f~~~~~~~~~~~~~~~l~~~~~~~~-~f~~f~di~~ly~ 74 (610)
-|||||. +|||.+|||.. +|||||||+|++.|.++|.++++||++|.++|.|+++++.+. +|+||+||++||.
T Consensus 233 R~rTgr~~t~~dp~~esr~~~~~~~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~ 312 (866)
T PLN02337 233 RGRTGRKPTKTDPNSESRLPLLSLNIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYE 312 (866)
T ss_pred cccCCCCCCCCCCccccccccCCCCcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhh
Confidence 4999965 79999999943 579999999999999999999999999999999999998777 9999999999999
Q ss_pred cCCCCCCCCc-chhhhhhhH-HHHHH-HhhccccccccCchhhhhccccccceeechhhccCCCCCCccchHHHHHHHhh
Q 040723 75 EDGFSIPPNL-NESIWNIIP-RWIRK-IKETGEQYLQFETPEALHKEFNVEHIVIRVFFTFAGDKFFWFRDEEFARQTLA 151 (610)
Q Consensus 75 ~~~~~~~~~~-~~~~~~~~~-~~~~~-~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~W~~D~~FarQ~La 151 (610)
+|+.+|... -...+.++| .+++. +.++++.++|||+|+||+ .++++|++|++||||+||
T Consensus 313 -~g~~lp~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~fp~P~vi~-----------------~d~~~W~~DeeFarQ~La 374 (866)
T PLN02337 313 -GGIKLPNGPLLEELRKNIPLEMLKELLRTDGEYLLKFPMPQVIK-----------------EDKSAWRTDEEFAREMLA 374 (866)
T ss_pred -cCCCCCCchHHHHhhhcChHHHHHHHHhhcccccccCCCCceee-----------------cccccccCHHHHHHHHhc
Confidence 999998742 122333333 44444 477889999999999998 899999999999999999
Q ss_pred cCCccchhhhH------------------------------------hhhcCceEEEcccccccchhhhccCCCchhhhc
Q 040723 152 RLNPCSIQLIT------------------------------------AIQQKKLFILDYHDLFLPYVEKVRHIEDEDEAL 195 (610)
Q Consensus 152 G~NP~~I~~~~------------------------------------al~~grLfi~Dy~~~~lp~~~~~~~~~g~~~~~ 195 (610)
|+||++|+||+ ||++|||||+||||.+|||+.++|...+
T Consensus 375 G~NP~~I~rl~~~P~~~~ld~~~yg~~~s~iT~e~v~~~L~g~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~----- 449 (866)
T PLN02337 375 GVNPVVIRRLTEFPPKSKLDPKKYGDQNSSITEEHIEKNLEGLTVQEALEKNRLFILDHHDALMPYLRRINSTST----- 449 (866)
T ss_pred CCCChheeecccCCCcccCChhhcCCccCccCHHHHHhccCCccHHHHHHcCCEEEEecchhcCcccccccCCCC-----
Confidence 99999999997 8999999999999988999988888654
Q ss_pred ccccccceeEEEeCCCCcceeEEEEecCCCCCCC--CCcceeeeCCCCCCCchHHHHHHHHHHhhhhhhHHHHHhhhhcc
Q 040723 196 KTTLYGSRTIFFLNPDDTLRPVAIELTRPPMDGK--PFWRKVYTPSWNSTDSWLWRLAKAHVLAHDAGYHQLVSHWLSTH 273 (610)
Q Consensus 196 ~~~~yAp~~Lffl~~~g~L~PiAIqL~~~~~~~~--~~~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~Hqli~Hll~TH 273 (610)
+.|||+||||++++|+|+||||||++|+..++ ++.++||||+++++++|.|+|||+||++||+++||+++||++||
T Consensus 450 --k~yA~~tLffl~~dG~L~PlAIqL~~p~~~~~~~g~~~~VfTP~~~~~~~~~W~lAK~~v~~aD~~~HqlisHllrTH 527 (866)
T PLN02337 450 --KTYATRTLLFLKDDGTLKPLAIELSLPHPQGDKFGAVSKVYTPAEDGVEGSVWQLAKAYVAVNDSGYHQLISHWLNTH 527 (866)
T ss_pred --ccccceeEEEECCCCCEeEEEEEeccCCCCcccCCCCCCeECCCCCCCCcchHHHHHHHHHHhhHHHHHHHHHHhhhh
Confidence 49999999999999999999999998754322 34689999997766789999999999999999999999999999
Q ss_pred chhhHHHHHHhccCCcccchhhcccccchhhhcchHHHhhccccCCcccccccCCchhHHHHHHHHHhccCCCCccccch
Q 040723 274 CVVEPYVIATNRQLSVIHPIYRLLHPHFRYTVEINAFARKDLVNAGGIIESTFSPGKYSMELSSVAYDKQWRFDHEALPK 353 (610)
Q Consensus 274 lv~Epf~vAt~R~Ls~~HPv~kLL~PH~r~tl~IN~~Ar~~LI~~gG~id~~~~~g~~~~el~~~~y~~~w~f~~~~lP~ 353 (610)
+++|||+|||+||||.+||||+||.||||+||+||++||+.||++||++|+++++|+++++|++++|++ |+|++++||+
T Consensus 528 lv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~AR~~LI~~gGiid~~~~~g~~~~els~~~yk~-w~F~~~~LP~ 606 (866)
T PLN02337 528 AVIEPFVIATNRQLSVLHPIHKLLHPHFRDTMNINALARQILINAGGILESTVFPGKYALEMSSVVYKN-WNFTEQALPA 606 (866)
T ss_pred hhHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHheeCCCCeeeeeeccchhHHHHHHHHHhc-CCcccccCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHhcCCCCCCCCCCCCccccccCCccchhhHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHhhcCCCCCCC
Q 040723 354 NLISRRMAAEDPCSPHGLKLTIEDYPYAKDGLDLWDILKKWVTDYVNHYYPNQSLVESDEELQAWWTEIRTVGHGDKEDE 433 (610)
Q Consensus 354 dL~~RG~~~~D~~~~~g~~~~lp~YpYrdDgl~iW~AI~~~V~~yv~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~d~~~~ 433 (610)
||++|||+++|+++|||+++.|||||||||||+||+||++||++||++||++|++|++|.|||+||+||+++||+++++.
T Consensus 607 DL~~RGv~~~D~~~p~g~~l~i~dYPYrdDGL~iW~AI~~~V~~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~G~gd~k~~ 686 (866)
T PLN02337 607 DLIKRGVAVEDPSSPHGVRLLIEDYPYAVDGLEIWSAIETWVKEYCAFYYPTDDMVQGDTELQSWWKEVREEGHGDLKDE 686 (866)
T ss_pred HHHHcCCCccccccccccccccCCCcchhhHHHHHHHHHHHHHHHHHhhCCchHhhccCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhHHHHHHhhhhhccccccccccccccccccccCCCccccCCCCCCCCCChhHHhhhccCchHHHhccCCCh
Q 040723 434 PWWPVLKTPQDLIETITTIIWVTSGQHAAVNFGQYTYAGYFPNRPAITRLNMPDEDKSNEIWKIFNEKPDNALLHTFPNP 513 (610)
Q Consensus 434 ~~~p~i~t~~~Lv~~lT~iIf~aS~qHAAVNfgQ~~~~gf~Pn~P~~lr~p~P~~~Kg~~~~~~~~~~~e~~~l~~LP~~ 513 (610)
+|||+|+|+++||++||+|||+||+||||||||||+|+||+||+|++||++||++ |+.++.+|..+||+++|++||++
T Consensus 687 ~~~p~l~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gfvPN~P~~~r~~~P~~--~~~e~~~l~~~~e~~~L~tlp~~ 764 (866)
T PLN02337 687 PWWPKMQTVAELIESCTIIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFMPEP--GTPEYEELEKNPDKAFLKTITAQ 764 (866)
T ss_pred CCCCccCCHHHHHHHHHhhhhhcchhhhhhhcCCcccccccCCCchhhcCCCCCC--CchhhhhhccCcHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999999976 77789999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCccCCceeecC
Q 040723 514 TQATKVMLILSLLSCHSPDEEFLGKDMEPAWGEDPEIKVAFEEFRGRLMELEGTINERNGDINLKNRNGAGVVPYNLLKP 593 (610)
Q Consensus 514 ~~a~~~m~~~~~LS~~~~de~yLG~~~~~~~~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~lk~r~~~~~~PY~~L~P 593 (610)
.||+.+|+++++||.|++||+|||+|.+..|+.|+++++|+++|+++|++||++|++||+++.+|||+||+++||+||+|
T Consensus 765 ~qt~~~~~l~~lLS~~s~de~yLG~~~~~~w~~d~~~~~a~~~F~~~L~eIe~~I~~RN~~~~~knr~G~~~~PY~lL~P 844 (866)
T PLN02337 765 LQTLLGISLIEILSRHSSDEVYLGQRDTPEWTSDAEPLEAFKRFGERLVEIENRIVDMNKDPRLKNRVGPVKMPYTLLYP 844 (866)
T ss_pred HHHHHHHHHHHHhccCCCCceeccCcCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccCCCCCCceeeCC
Confidence 99999999999999999999999999877999999999999999999999999999999999999999999999999999
Q ss_pred CC-----CCCCccCCCCccccC
Q 040723 594 FW-----KDGDKEKGVPYSISI 610 (610)
Q Consensus 594 s~-----~~g~t~~~IpnSIsI 610 (610)
++ +||||||||||||||
T Consensus 845 ~~~~~~~~~g~t~~gIPNSISI 866 (866)
T PLN02337 845 NTSDYTGEGGLTGKGIPNSVSI 866 (866)
T ss_pred CCccccCCCCcccCCCCCcccC
Confidence 99 999999999999998
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=3.5e-160 Score=1350.82 Aligned_cols=563 Identities=52% Similarity=0.908 Sum_probs=489.4
Q ss_pred CCCCCCC--CCCCCCCCCCCCCccCCCCCCChhhhhhhhhhhHHHHHhhhhhhhhhhcCCCC-CCCCHHHHHHHhhcCCC
Q 040723 2 FCNTFSE--RKPIGDENRADDIYVPRDEAFSDIKLAAFDSKKTYSFVSTLPTLIETKFDGDK-KFEYFTEIDELFDEDGF 78 (610)
Q Consensus 2 ~~~~~~~--~~d~~~e~~~~~~yvPrDe~f~~~k~~~f~~~~~~~~~~~~~~~l~~~~~~~~-~f~~f~di~~ly~~~~~ 78 (610)
-|||||. ++||.+|||..++||||||+|++.|+++|.++++||++|.++|.|++++.... +|+||+||++||+ +|+
T Consensus 63 R~RTGr~~~~~Dp~sEsr~~~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~-~g~ 141 (667)
T PF00305_consen 63 RCRTGRPPTKTDPKSESRSGDIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYE-EGI 141 (667)
T ss_dssp EE----SBESSCTTSBGC-SSGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHT-TTE
T ss_pred cCCCCCCCCCCCccccCccccccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHh-ccc
Confidence 3999987 68999999988999999999999999999999999999999999999977666 9999999999999 999
Q ss_pred CCCCCcchhhhhh-hHHHHHHHhhccccccccCchhhhhccccccceeechhhccCCCCCCccchHHHHHHHhhcCCccc
Q 040723 79 SIPPNLNESIWNI-IPRWIRKIKETGEQYLQFETPEALHKEFNVEHIVIRVFFTFAGDKFFWFRDEEFARQTLARLNPCS 157 (610)
Q Consensus 79 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~W~~D~~FarQ~LaG~NP~~ 157 (610)
++|.. .+.+.+ ++.+.+.+..+++.++|||+|+|++ .++.+|++|++||||+|||+||++
T Consensus 142 ~l~~~--~~~~~~~~~~~~~~~~~~~~~~~kf~~p~v~~-----------------~~~~~W~~DeeFarQ~LaG~NP~~ 202 (667)
T PF00305_consen 142 KLPTD--LLKKLIPLELLKELFRTDGENILKFPTPQVIE-----------------RDRFAWRTDEEFARQRLAGVNPVV 202 (667)
T ss_dssp E--HH--HHCCHTTSTTCCTTSBETSSSEEB----HHHH-----------------CHHHHTTSHHHHHHHHHHSSSTTS
T ss_pred cchhh--HhhhcCcHHHHHHHHhhcccceeeCCCCccch-----------------hhhhccCChHHHHHHHHcCCCchH
Confidence 88822 111111 2233344556788999999999998 788899999999999999999999
Q ss_pred hhhhH------------------------------------hhhcCceEEEcccccccchhhhccCCCchhhhccccccc
Q 040723 158 IQLIT------------------------------------AIQQKKLFILDYHDLFLPYVEKVRHIEDEDEALKTTLYG 201 (610)
Q Consensus 158 I~~~~------------------------------------al~~grLfi~Dy~~~~lp~~~~~~~~~g~~~~~~~~~yA 201 (610)
|++|+ |+++|||||+||+++.+|++++++. .+ ++.||
T Consensus 203 I~r~~e~P~~~~ld~~~yg~~~s~it~e~i~~~l~g~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~-~~------~~~~A 275 (667)
T PF00305_consen 203 IRRLTEFPPKSKLDPAIYGDQESPITDEHIEPQLEGLTLEEALKDGRLFILDYHDLFGPYLNKINE-KG------RYAYA 275 (667)
T ss_dssp EEE-SSSSTTS-SSHHCCTSSB-STTHHHHHHHCHCS-HHHHHHTT-EEEEEEGGGTTHHHHHHTT-CC------GBG-E
T ss_pred hhccccCCccccccHhhcCCccCCchHHHhhhccCCCcHHHHHhcCCeEEEeehhhcccccccccc-CC------cEecc
Confidence 99998 8889999999999999999998887 55 89999
Q ss_pred ceeEEEeCCCCcceeEEEEecCCCCCCCCCcceeeeCCCCCCCchHHHHHHHHHHhhhhhhHHHHHhhhhccchhhHHHH
Q 040723 202 SRTIFFLNPDDTLRPVAIELTRPPMDGKPFWRKVYTPSWNSTDSWLWRLAKAHVLAHDAGYHQLVSHWLSTHCVVEPYVI 281 (610)
Q Consensus 202 p~~Lffl~~~g~L~PiAIqL~~~~~~~~~~~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~Hqli~Hll~THlv~Epf~v 281 (610)
|+||||++++|+|+||||||++++..+.++.++||||+++++.+|.|+|||+||++||+++||+++||++||+|||||+|
T Consensus 276 ~~~Lf~l~~~g~L~PlAIqL~~p~~~~~~~~~~v~tP~~d~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~~v 355 (667)
T PF00305_consen 276 PRALFFLNPDGTLKPLAIQLSQPGPEGPPQFNPVFTPSDDGTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPFIV 355 (667)
T ss_dssp EEEEEEEETTSEEEEEEEECSECBTTCS-EEEEEE-TTSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_pred ceeEEEEcCCCCEeeeEEeccCCCCcccCccceeeecCCCCccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHHHH
Confidence 99999999999999999999877544435568999999555567889999999999999999999999999999999999
Q ss_pred HHhccCCcccchhhcccccchhhhcchHHHhhccccCCcccccccCCchhHHHHHHHHHhccCCCCccccchHHHhcCCC
Q 040723 282 ATNRQLSVIHPIYRLLHPHFRYTVEINAFARKDLVNAGGIIESTFSPGKYSMELSSVAYDKQWRFDHEALPKNLISRRMA 361 (610)
Q Consensus 282 At~R~Ls~~HPv~kLL~PH~r~tl~IN~~Ar~~LI~~gG~id~~~~~g~~~~el~~~~y~~~w~f~~~~lP~dL~~RG~~ 361 (610)
||+||||.+||||+||.|||++||+||++||.+||++||++|++|++|+++++|++++|++ |+|++++||+||++|||+
T Consensus 356 At~R~Ls~~HPi~kLL~PH~r~tl~IN~~Ar~~Li~~gG~id~~~~~g~~~~~l~~~~y~~-~~f~~~~lP~dL~~RG~~ 434 (667)
T PF00305_consen 356 ATHRQLSEMHPIYKLLHPHFRYTLAINALARQSLINAGGIIDKTFSPGKYGMELSSRAYKN-WRFDDQALPADLKKRGMA 434 (667)
T ss_dssp HHHHHS-TTSHHHHHHGGGGTTHHHHHHHHHHHTSSTTSHHHHHSTTTTTHHHHHHHHHTT---GGGGSHHHHHHHTTSE
T ss_pred HHhcCCCCCCCceeeccceeecchhhhHHHHHHhhccCcccccccchhhHHHHHHHHHHhh-CCcccccCHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCCCCCCCccccccCCccchhhHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCC
Q 040723 362 AEDPCSPHGLKLTIEDYPYAKDGLDLWDILKKWVTDYVNHYYPNQSLVESDEELQAWWTEIRTVGHGDKEDEPWWPVLKT 441 (610)
Q Consensus 362 ~~D~~~~~g~~~~lp~YpYrdDgl~iW~AI~~~V~~yv~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~d~~~~~~~p~i~t 441 (610)
++|++++||+++.||+||||||||+||+||++||++||++||++|++|++|.|||+||+||+++||+++++.+||++|+|
T Consensus 435 ~~D~~~~~g~~~~l~~YpY~dDgl~iW~aI~~~V~~~v~~yY~~d~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~~~i~t 514 (667)
T PF00305_consen 435 VDDPSSPHGLRLVLPDYPYRDDGLLIWDAIKKFVSDYVNLYYKSDEAVANDTELQAWWNEIRTVGHGDKKDEGFPPKIKT 514 (667)
T ss_dssp EE-TTSTTSEETTSTT-HHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHT-HHHHHHHHHHHHTTTTGGTTGTTSSSSSS
T ss_pred ccccccccccccccccCChhHHHHHHHHHHHHHHHHhhhhhcCCcceeCcCHHHHHHHHHHhcccccCcCcCCCCCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred hhHHHHHHhhhhhccccccccccccccccccccCCCccccCCCCCCCCCChh--HHhhhccCchHHHhccCCChHHHHHH
Q 040723 442 PQDLIETITTIIWVTSGQHAAVNFGQYTYAGYFPNRPAITRLNMPDEDKSNE--IWKIFNEKPDNALLHTFPNPTQATKV 519 (610)
Q Consensus 442 ~~~Lv~~lT~iIf~aS~qHAAVNfgQ~~~~gf~Pn~P~~lr~p~P~~~Kg~~--~~~~~~~~~e~~~l~~LP~~~~a~~~ 519 (610)
+++||++||+|||+||+||||||||||+|+||+||+|++||+++|.+ +.. +++++..+||+++|++||++.||+.+
T Consensus 515 ~~~Li~~lT~iI~~~S~qHaAVNfgQ~~y~g~~PN~P~~~r~~~P~~--~~~~~~~~~l~~~~e~~~l~~LP~~~~a~~~ 592 (667)
T PF00305_consen 515 RDELIDILTTIIFTASAQHAAVNFGQYDYYGFVPNRPTALRRPMPPP--TTKEVTYEELLKDPEKDFLSTLPSKQQALLQ 592 (667)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHTTHHHHHSSGGGS-S-BSSSS--T--SSSH--HHHHHHHHHHHHHHHS--HHHHHHH
T ss_pred HHHHHHHHHHHeeecchhhhhhcccccceeeecCCCChhhcccCCCC--CcchhhhhhhccChHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999888876 333 48899999999999999999999999
Q ss_pred HHHHHhhcCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCccCCceeecCC
Q 040723 520 MLILSLLSCHSPDEEFLGKDMEPAWGEDPEIKVAFEEFRGRLMELEGTINERNGDINLKNRNGAGVVPYNLLKPF 594 (610)
Q Consensus 520 m~~~~~LS~~~~de~yLG~~~~~~~~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~lk~r~~~~~~PY~~L~Ps 594 (610)
|+++++||+|++||+|||+|++..|+.|+++++|+++|+++|++||++|++||+++++|||+|+|++||+||+||
T Consensus 593 ~~~~~~LS~~~~de~~Lg~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~~nr~g~~~~PY~~L~Ps 667 (667)
T PF00305_consen 593 MAVLELLSRHSPDEEYLGQYPEPHWFSDPEAKAAFERFQEELKEIEEEIDERNKDRKLKNRNGPGKVPYTYLLPS 667 (667)
T ss_dssp HHHHHHHTCB-TT--BTTT-SSTTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGTTTTT----TTSST
T ss_pred HHHHHHhccCCCCcccccCcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCCCCccccCCC
Confidence 999999999999999999999888999999999999999999999999999999999999999999999999996
No 5
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=33.40 E-value=24 Score=36.25 Aligned_cols=24 Identities=33% Similarity=0.906 Sum_probs=20.0
Q ss_pred HHHHhhcccccccccccccCCHHHHHHHHH
Q 040723 392 KKWVTDYVNHYYPNQSLVESDEELQAWWTE 421 (610)
Q Consensus 392 ~~~V~~yv~~yY~~D~~V~~D~ELQaW~~E 421 (610)
.+||..||+.|| ..+.|+..|+++
T Consensus 178 ~~~Ve~YIKAyY------l~e~e~~~W~~~ 201 (234)
T PF10474_consen 178 REYVENYIKAYY------LPEEELEEWIRT 201 (234)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHh
Confidence 579999999999 345689999975
No 6
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=29.84 E-value=92 Score=29.70 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=38.1
Q ss_pred cccCCHHHHHHHHHHHhhcCCCCCCCCCCC-CCCChhHHHHHHhhhhhccc
Q 040723 408 LVESDEELQAWWTEIRTVGHGDKEDEPWWP-VLKTPQDLIETITTIIWVTS 457 (610)
Q Consensus 408 ~V~~D~ELQaW~~Ei~~~G~~d~~~~~~~p-~i~t~~~Lv~~lT~iIf~aS 457 (610)
-|.+|++|..+++++.++ .....+-.|.+ .+++.+++..++-.||-+|=
T Consensus 11 lIe~dp~l~ml~~~Mf~q-~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP 60 (141)
T PF12588_consen 11 LIESDPRLYMLFTQMFDQ-PPYNADPTGNPPQIRDYDEMLQLLNHIMTTAP 60 (141)
T ss_pred HHhcCHHHHHHHHHHHhC-cccccCCCCCccccccHHHHHHHHHHHHhhCC
Confidence 468899999999999987 22223334667 89999999999999996543
No 7
>PF09545 RE_AccI: AccI restriction endonuclease; InterPro: IPR019054 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease AccI, which recognises and cleaves the double-stranded sequence GT^MKAC.
Probab=28.83 E-value=1.7e+02 Score=31.33 Aligned_cols=71 Identities=10% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhccccccc-ccccccCCHHHHHHHHHHHhhcCCC--CCCC-----CCCC-------CCCChhHHHHHHh
Q 040723 386 DLWDILKKWVTDYVNHYYP-NQSLVESDEELQAWWTEIRTVGHGD--KEDE-----PWWP-------VLKTPQDLIETIT 450 (610)
Q Consensus 386 ~iW~AI~~~V~~yv~~yY~-~D~~V~~D~ELQaW~~Ei~~~G~~d--~~~~-----~~~p-------~i~t~~~Lv~~lT 450 (610)
+|-+||.+.-.+|+.+-|. |++.+.+|.+...+..+...+|.+- .+|. ..++ ...+.++|-++|-
T Consensus 51 ~V~~AINeT~~~fvAV~YG~S~~~~agd~gFe~fyq~~Q~elnTIgKRPDlLiF~~~~~~~sL~~di~~~~~~~l~~~V~ 130 (366)
T PF09545_consen 51 RVLRAINETSSEFVAVRYGPSDAIPAGDEGFELFYQRLQRELNTIGKRPDLLIFKKSDFDDSLMFDISQIPHDKLDKYVK 130 (366)
T ss_pred HHHHHHhhccccEEEEEecCCCCCCcCchhHHHHHHHHHHHhhccCCCCcEEEEeccccchhhccccccCchHHHHHHHH
Confidence 4789999999999999775 8999999999999999988765432 2221 0111 2456677777777
Q ss_pred hhhhcc
Q 040723 451 TIIWVT 456 (610)
Q Consensus 451 ~iIf~a 456 (610)
..|+-.
T Consensus 131 kAI~gv 136 (366)
T PF09545_consen 131 KAIAGV 136 (366)
T ss_pred HhheeE
Confidence 777543
No 8
>PF08153 NGP1NT: NGP1NT (NUC091) domain; InterPro: IPR012971 This N-terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [].
Probab=27.16 E-value=39 Score=31.75 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=19.1
Q ss_pred CCCCCCCcHHH--HHHHHHHHHHHHHHH
Q 040723 540 MEPAWGEDPEI--KVAFEEFRGRLMELE 565 (610)
Q Consensus 540 ~~~~~~~d~~~--~~a~~~F~~~L~~ie 565 (610)
++..||.+.++ +.+++.|+++|.+-.
T Consensus 33 PdRrWFgNTRvI~Q~~L~~FReem~~~~ 60 (130)
T PF08153_consen 33 PDRRWFGNTRVISQEALEKFREEMGEKV 60 (130)
T ss_pred cchhhhcCceEECHHHHHHHHHHHHHhh
Confidence 34479988765 578999999887543
No 9
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=27.05 E-value=1.1e+02 Score=22.26 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCCCCCCChhHHHHHHh
Q 040723 411 SDEELQAWWTEIRTVGHGDKEDEPWWPVLKTPQDLIETIT 450 (610)
Q Consensus 411 ~D~ELQaW~~Ei~~~G~~d~~~~~~~p~i~t~~~Lv~~lT 450 (610)
.+.+|+.|..+ .|. ... +...|+++|++.+-
T Consensus 5 s~~~L~~wL~~---~gi--~~~----~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 5 SDSDLKSWLKS---HGI--PVP----KSAKTRDELLKLAK 35 (38)
T ss_pred CHHHHHHHHHH---cCC--CCC----CCCCCHHHHHHHHH
Confidence 46899999986 232 111 12269999998764
No 10
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=21.48 E-value=2.3e+02 Score=31.86 Aligned_cols=110 Identities=25% Similarity=0.344 Sum_probs=72.8
Q ss_pred hHHHHHHhccCCcccchhhcccccchhhhcchHHH--------------hhccccCCcccccccCCchhHHHHH--HHHH
Q 040723 277 EPYVIATNRQLSVIHPIYRLLHPHFRYTVEINAFA--------------RKDLVNAGGIIESTFSPGKYSMELS--SVAY 340 (610)
Q Consensus 277 Epf~vAt~R~Ls~~HPv~kLL~PH~r~tl~IN~~A--------------r~~LI~~gG~id~~~~~g~~~~el~--~~~y 340 (610)
+-+.+|..+|=|..-=+..+|.|--..++.||..= -..=|+.=|++.-.-+|+.+.-|+. +.-|
T Consensus 91 ~~L~~A~q~qKPds~elad~LkPI~e~i~eI~~fkE~nRkS~~FNhLsav~e~i~algWVav~~tP~p~vke~~daa~FY 170 (480)
T KOG2675|consen 91 AFLWVASQKQKPDSNELADLLKPINEEIGEINNFKEKNRKSPFFNHLSAVSESIPALGWVAVKPTPAPYVKEFKDAAQFY 170 (480)
T ss_pred HHHHHHHhccCCChHHHHHHhhhHHHhhhHHhhhhhcccCchHHHHHHHHHhhcccceeEecCCCCchHHHHHHHHHHHH
Confidence 45677888888888889999999999999998742 2233445567655555666654442 2223
Q ss_pred hccCCCCccccchHHHhcCCCCCCCCCCCCccccccCCccchhhHHHHHHHHHHHhhcccccccccccccCCHHHHHHHH
Q 040723 341 DKQWRFDHEALPKNLISRRMAAEDPCSPHGLKLTIEDYPYAKDGLDLWDILKKWVTDYVNHYYPNQSLVESDEELQAWWT 420 (610)
Q Consensus 341 ~~~w~f~~~~lP~dL~~RG~~~~D~~~~~g~~~~lp~YpYrdDgl~iW~AI~~~V~~yv~~yY~~D~~V~~D~ELQaW~~ 420 (610)
.+ .- |..|.=-|+ .-+ +||+.|+.+| .|||+.++
T Consensus 171 ~N----------rv--------------------LkEyk~~D~-~hv-----eWvKa~l~l~----------~eL~~YVk 204 (480)
T KOG2675|consen 171 TN----------RV--------------------LKEYKEKDP-RHV-----EWVKAYLALF----------LELQAYVK 204 (480)
T ss_pred HH----------HH--------------------HHHhccCCh-hHH-----HHHHHHHHHH----------HHHHHHHH
Confidence 22 11 222222222 222 7999999998 68999999
Q ss_pred HHHhhcCCCCCC
Q 040723 421 EIRTVGHGDKED 432 (610)
Q Consensus 421 Ei~~~G~~d~~~ 432 (610)
|-.+-|....++
T Consensus 205 ~hhtTGl~W~~~ 216 (480)
T KOG2675|consen 205 EHHTTGLVWNKD 216 (480)
T ss_pred HhccccceecCC
Confidence 999888766555
Done!