Query 040725
Match_columns 164
No_of_seqs 174 out of 1351
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 18:00:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 99.9 7.7E-28 2.6E-32 176.8 9.1 148 4-154 1-179 (192)
2 2xqn_T Testin, TESS; metal-bin 99.9 3.2E-27 1.1E-31 162.5 6.7 113 10-149 3-125 (126)
3 2xjy_A Rhombotin-2; oncoprotei 99.9 5.8E-27 2E-31 162.2 6.8 116 10-152 2-130 (131)
4 1rut_X Flinc4, fusion protein 99.9 1.2E-25 4.2E-30 164.5 5.3 122 9-156 4-137 (188)
5 2rgt_A Fusion of LIM/homeobox 99.9 8.1E-25 2.8E-29 157.6 6.8 116 9-152 5-130 (169)
6 2jtn_A LIM domain-binding prot 99.9 1.8E-24 6E-29 157.6 8.6 115 7-149 57-181 (182)
7 2cup_A Skeletal muscle LIM-pro 99.9 1.6E-24 5.4E-29 143.5 7.1 96 8-130 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.8 1E-19 3.5E-24 124.3 5.4 107 9-155 4-120 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.7 6.4E-18 2.2E-22 114.0 7.0 102 9-155 2-112 (114)
10 2cu8_A Cysteine-rich protein 2 99.7 1.2E-17 4E-22 104.8 6.7 72 3-74 2-74 (76)
11 1a7i_A QCRP2 (LIM1); LIM domai 99.7 3.7E-18 1.3E-22 108.4 4.2 71 4-74 1-71 (81)
12 2d8y_A Eplin protein; LIM doma 99.7 6.1E-17 2.1E-21 104.9 5.3 72 9-80 14-85 (91)
13 2dj7_A Actin-binding LIM prote 99.7 1.2E-16 4.1E-21 101.2 6.5 67 7-74 12-78 (80)
14 1g47_A Pinch protein; LIM doma 99.6 1.8E-16 6.3E-21 99.4 5.4 72 3-74 4-76 (77)
15 2cuq_A Four and A half LIM dom 99.6 8.1E-17 2.8E-21 101.8 3.6 70 56-152 1-76 (80)
16 2cur_A Skeletal muscle LIM-pro 99.6 2.5E-16 8.6E-21 96.8 5.3 65 9-74 4-68 (69)
17 2ehe_A Four and A half LIM dom 99.6 1.4E-16 4.9E-21 101.1 3.9 70 56-152 1-78 (82)
18 2d8z_A Four and A half LIM dom 99.6 3.2E-16 1.1E-20 96.6 5.3 65 9-74 4-68 (70)
19 2dar_A PDZ and LIM domain prot 99.6 3.5E-16 1.2E-20 101.1 5.7 67 7-74 22-88 (90)
20 1wyh_A SLIM 2, skeletal muscle 99.6 4.3E-16 1.5E-20 96.5 5.6 66 9-74 4-70 (72)
21 1x3h_A Leupaxin; paxillin fami 99.6 1.3E-16 4.4E-21 100.9 3.3 70 56-152 1-76 (80)
22 1nyp_A Pinch protein; LIM doma 99.6 3.8E-16 1.3E-20 95.2 5.2 63 9-72 4-66 (66)
23 1iml_A CRIP, cysteine rich int 99.6 5.6E-16 1.9E-20 97.0 6.0 64 11-74 1-65 (76)
24 1x68_A FHL5 protein; four-and- 99.6 3.7E-16 1.3E-20 97.9 5.1 65 10-74 5-72 (76)
25 1x4k_A Skeletal muscle LIM-pro 99.6 7E-16 2.4E-20 95.5 5.8 65 10-74 5-70 (72)
26 1x4l_A Skeletal muscle LIM-pro 99.6 6E-16 2.1E-20 95.9 5.2 66 8-73 3-71 (72)
27 1x62_A C-terminal LIM domain p 99.6 5E-16 1.7E-20 98.0 3.9 66 7-73 12-77 (79)
28 2d8x_A Protein pinch; LIM doma 99.6 1.5E-15 5.3E-20 93.5 5.7 65 8-73 3-67 (70)
29 2egq_A FHL1 protein; LIM domai 99.6 3.3E-16 1.1E-20 98.2 2.4 61 56-143 1-66 (77)
30 2co8_A NEDD9 interacting prote 99.6 1.1E-15 3.8E-20 97.1 4.5 67 5-71 10-78 (82)
31 1x64_A Alpha-actinin-2 associa 99.6 2.5E-15 8.4E-20 96.9 6.1 64 9-73 24-87 (89)
32 1x63_A Skeletal muscle LIM-pro 99.6 6.8E-16 2.3E-20 98.0 3.4 73 56-154 1-80 (82)
33 1x63_A Skeletal muscle LIM-pro 99.6 3.4E-15 1.2E-19 94.7 6.0 65 10-74 15-80 (82)
34 2cor_A Pinch protein; LIM doma 99.6 3.7E-15 1.2E-19 94.1 5.6 67 6-74 11-77 (79)
35 2ehe_A Four and A half LIM dom 99.6 2.6E-15 9E-20 95.3 4.8 65 10-74 15-80 (82)
36 2dlo_A Thyroid receptor-intera 99.6 1.4E-15 4.9E-20 96.3 3.5 69 56-152 2-77 (81)
37 1x6a_A LIMK-2, LIM domain kina 99.6 1.9E-15 6.6E-20 95.7 3.9 71 56-153 1-79 (81)
38 1x3h_A Leupaxin; paxillin fami 99.6 3.1E-15 1.1E-19 94.5 4.8 64 10-74 15-78 (80)
39 2dlo_A Thyroid receptor-intera 99.6 4.2E-15 1.4E-19 94.1 5.4 66 8-74 13-79 (81)
40 2cuq_A Four and A half LIM dom 99.6 4E-15 1.4E-19 94.0 5.1 65 9-74 14-78 (80)
41 1v6g_A Actin binding LIM prote 99.5 2.5E-15 8.7E-20 95.1 3.3 71 57-154 2-79 (81)
42 1x61_A Thyroid receptor intera 99.5 8.2E-15 2.8E-19 90.7 4.8 63 9-71 4-67 (72)
43 3f6q_B LIM and senescent cell 99.5 1.1E-14 3.8E-19 89.9 4.9 62 9-70 10-72 (72)
44 1wig_A KIAA1808 protein; LIM d 99.5 1.7E-14 5.9E-19 89.6 5.5 63 9-72 4-67 (73)
45 2l4z_A DNA endonuclease RBBP8, 99.5 3.1E-14 1.1E-18 97.1 4.6 61 10-70 61-123 (123)
46 2iyb_E Testin, TESS, TES; LIM 99.5 6E-14 2.1E-18 85.1 4.8 59 10-68 2-64 (65)
47 1x6a_A LIMK-2, LIM domain kina 99.4 7.5E-14 2.6E-18 88.2 4.5 64 9-73 14-79 (81)
48 1b8t_A Protein (CRP1); LIM dom 99.4 1.2E-13 4.1E-18 101.0 5.9 66 9-74 114-179 (192)
49 2egq_A FHL1 protein; LIM domai 99.4 1E-13 3.4E-18 86.8 4.6 60 9-68 14-77 (77)
50 2l3k_A Rhombotin-2, linker, LI 99.4 2.3E-13 7.9E-18 92.7 5.9 66 11-76 9-76 (123)
51 1nyp_A Pinch protein; LIM doma 99.3 3.1E-13 1.1E-17 82.1 2.7 49 104-152 12-66 (66)
52 1wig_A KIAA1808 protein; LIM d 99.3 1.9E-12 6.4E-17 80.3 3.9 50 104-153 12-68 (73)
53 1x68_A FHL5 protein; four-and- 99.3 1.6E-12 5.5E-17 81.1 3.5 43 110-152 22-70 (76)
54 2dar_A PDZ and LIM domain prot 99.3 2.3E-12 8E-17 83.0 3.9 50 104-153 32-87 (90)
55 2d8z_A Four and A half LIM dom 99.3 3E-12 1E-16 78.5 4.0 49 104-152 12-66 (70)
56 1v6g_A Actin binding LIM prote 99.3 3.1E-12 1.1E-16 80.7 4.1 62 10-72 15-77 (81)
57 2cur_A Skeletal muscle LIM-pro 99.3 3.3E-12 1.1E-16 78.2 3.7 49 104-152 12-66 (69)
58 1x4l_A Skeletal muscle LIM-pro 99.3 4.2E-12 1.4E-16 78.3 4.2 44 110-153 22-71 (72)
59 2d8x_A Protein pinch; LIM doma 99.2 5.1E-12 1.7E-16 77.5 3.8 49 104-152 12-66 (70)
60 1rut_X Flinc4, fusion protein 99.2 1.1E-11 3.7E-16 90.3 6.0 63 12-74 71-135 (188)
61 1x62_A C-terminal LIM domain p 99.2 3.3E-12 1.1E-16 80.3 2.5 53 101-153 19-77 (79)
62 1wyh_A SLIM 2, skeletal muscle 99.2 5.4E-12 1.8E-16 77.7 3.4 43 110-152 20-68 (72)
63 2xjy_A Rhombotin-2; oncoprotei 99.2 5.4E-12 1.8E-16 86.6 3.7 61 12-72 68-130 (131)
64 2co8_A NEDD9 interacting prote 99.2 1.8E-11 6.2E-16 77.4 5.4 52 102-153 20-80 (82)
65 1x64_A Alpha-actinin-2 associa 99.2 9.3E-12 3.2E-16 80.0 3.9 54 100-153 28-87 (89)
66 1x4k_A Skeletal muscle LIM-pro 99.2 6.5E-12 2.2E-16 77.4 2.9 42 111-152 21-68 (72)
67 2dj7_A Actin-binding LIM prote 99.2 1.3E-11 4.4E-16 77.8 4.1 48 104-152 22-76 (80)
68 1a7i_A QCRP2 (LIM1); LIM domai 99.1 1.7E-11 5.7E-16 77.3 2.9 50 104-153 14-70 (81)
69 2cu8_A Cysteine-rich protein 2 99.1 2.3E-11 8E-16 75.7 3.5 49 104-152 16-72 (76)
70 2cor_A Pinch protein; LIM doma 99.1 4.6E-11 1.6E-15 75.0 4.7 48 104-152 22-75 (79)
71 1x61_A Thyroid receptor intera 99.1 3.3E-11 1.1E-15 74.2 3.8 41 111-151 21-67 (72)
72 3f6q_B LIM and senescent cell 99.1 1.6E-11 5.6E-16 75.4 2.0 43 108-150 23-72 (72)
73 2xqn_T Testin, TESS; metal-bin 99.1 7.4E-11 2.5E-15 80.4 5.0 60 10-69 63-125 (126)
74 2d8y_A Eplin protein; LIM doma 99.1 4.9E-11 1.7E-15 76.8 3.5 49 106-154 25-79 (91)
75 1iml_A CRIP, cysteine rich int 99.1 5.4E-11 1.8E-15 74.1 3.2 49 106-154 10-65 (76)
76 1g47_A Pinch protein; LIM doma 99.1 6.7E-11 2.3E-15 73.7 3.4 44 109-152 24-74 (77)
77 2iyb_E Testin, TESS, TES; LIM 99.1 4.6E-11 1.6E-15 72.2 2.1 35 109-143 16-52 (65)
78 2rgt_A Fusion of LIM/homeobox 99.0 1.3E-10 4.4E-15 83.1 4.3 63 10-72 65-130 (169)
79 1j2o_A FLIN2, fusion of rhombo 99.0 1.3E-10 4.3E-15 78.0 3.7 49 104-152 10-67 (114)
80 2l3k_A Rhombotin-2, linker, LI 99.0 7.6E-11 2.6E-15 80.1 2.5 42 112-153 25-73 (123)
81 2cup_A Skeletal muscle LIM-pro 99.0 1.5E-10 5.2E-15 75.8 3.6 44 109-152 19-68 (101)
82 2l4z_A DNA endonuclease RBBP8, 99.0 1.5E-10 5.1E-15 78.7 2.9 52 99-150 63-123 (123)
83 1m3v_A FLIN4, fusion of the LI 98.9 2.7E-10 9.2E-15 77.3 1.7 48 104-151 12-68 (122)
84 2jtn_A LIM domain-binding prot 98.9 1.2E-09 4E-14 79.0 3.9 60 10-69 119-181 (182)
85 1zfo_A LAsp-1; LIM domain, zin 98.1 5E-07 1.7E-11 46.2 0.5 28 11-38 4-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 97.9 7.1E-06 2.4E-10 41.8 2.3 21 104-124 11-31 (31)
87 1jjd_A Metallothionein, SMTA; 63.4 4.5 0.00015 22.8 2.0 30 39-68 9-39 (55)
88 2gvi_A Conserved hypothetical 61.8 2.9 9.9E-05 30.1 1.3 31 37-67 172-202 (204)
89 4ap4_A E3 ubiquitin ligase RNF 54.7 2.2 7.6E-05 27.7 -0.3 23 115-137 97-127 (133)
90 2ct0_A Non-SMC element 1 homol 50.6 4.1 0.00014 24.4 0.4 17 6-22 11-27 (74)
91 2cs3_A Protein C14ORF4, MY039 49.1 5.4 0.00018 24.4 0.8 28 38-65 16-46 (93)
92 1x4j_A Ring finger protein 38; 48.5 12 0.00042 21.6 2.4 12 56-67 44-55 (75)
93 2i5o_A DNA polymerase ETA; zin 47.4 1.5 5.2E-05 22.9 -1.6 20 124-143 10-29 (39)
94 1znf_A 31ST zinc finger from X 44.2 9.1 0.00031 16.3 1.1 12 124-135 2-13 (27)
95 2kvh_A Zinc finger and BTB dom 42.7 9.1 0.00031 16.5 0.9 12 124-135 4-15 (27)
96 2dmj_A Poly (ADP-ribose) polym 42.5 6 0.00021 25.3 0.3 17 9-25 24-40 (106)
97 1ard_A Yeast transcription fac 41.4 10 0.00035 16.4 1.0 12 124-135 3-14 (29)
98 3ng2_A RNF4, snurf, ring finge 40.6 7.7 0.00026 22.0 0.6 24 115-138 35-66 (71)
99 1rik_A E6APC1 peptide; E6-bind 39.3 11 0.00039 16.3 1.0 13 124-136 3-15 (29)
100 2ecm_A Ring finger and CHY zin 39.1 9.7 0.00033 20.3 0.8 21 115-135 27-55 (55)
101 2xeu_A Ring finger protein 4; 39.0 9.6 0.00033 21.0 0.8 26 114-139 27-60 (64)
102 2m0e_A Zinc finger and BTB dom 38.8 13 0.00045 15.9 1.2 13 124-136 3-15 (29)
103 1v9x_A Poly (ADP-ribose) polym 38.7 6.3 0.00021 25.7 -0.1 17 9-25 19-35 (114)
104 2kvf_A Zinc finger and BTB dom 38.5 11 0.00038 16.2 0.9 12 124-135 4-15 (28)
105 3nw0_A Non-structural maintena 38.5 8.2 0.00028 28.4 0.5 14 8-21 178-191 (238)
106 1paa_A Yeast transcription fac 38.2 12 0.00042 16.3 1.0 13 124-136 3-15 (30)
107 2m0f_A Zinc finger and BTB dom 37.9 11 0.00039 16.2 0.8 11 124-134 3-13 (29)
108 2lvu_A Zinc finger and BTB dom 44.1 6.8 0.00023 16.7 0.0 13 124-136 3-15 (26)
109 2lbz_A Thuricin17, thurincin H 37.8 9.3 0.00032 18.0 0.5 13 121-133 5-17 (31)
110 1uw0_A DNA ligase III; DNA rep 37.2 9.5 0.00033 24.9 0.6 17 9-25 14-30 (117)
111 2ect_A Ring finger protein 126 35.9 53 0.0018 18.8 3.9 13 56-68 36-48 (78)
112 2m0d_A Zinc finger and BTB dom 35.5 13 0.00044 16.1 0.8 11 124-134 4-14 (30)
113 1klr_A Zinc finger Y-chromosom 35.5 15 0.00052 15.8 1.1 12 124-135 3-14 (30)
114 2kvg_A Zinc finger and BTB dom 35.4 11 0.00038 16.3 0.5 12 124-135 4-15 (27)
115 3mhs_C SAGA-associated factor 33.3 6.3 0.00022 25.0 -0.7 22 119-140 66-87 (99)
116 2elx_A Zinc finger protein 406 31.7 17 0.00057 16.6 0.9 13 123-135 7-19 (35)
117 1srk_A Zinc finger protein ZFP 31.6 17 0.00057 16.7 0.9 12 124-135 8-19 (35)
118 1p7a_A BF3, BKLF, kruppel-like 31.5 18 0.00061 16.9 1.0 13 123-135 11-23 (37)
119 2lvr_A Zinc finger and BTB dom 37.6 10 0.00034 16.6 0.0 13 124-136 4-16 (30)
120 2e5r_A Dystrobrevin alpha; ZZ 30.9 23 0.00078 20.2 1.5 24 115-140 5-29 (63)
121 2elr_A Zinc finger protein 406 30.7 19 0.00064 16.6 1.0 13 123-135 9-21 (36)
122 1rim_A E6APC2 peptide; E6-bind 30.6 19 0.00066 16.5 1.0 12 124-135 3-14 (33)
123 2lvt_A Zinc finger and BTB dom 35.8 11 0.00038 16.4 0.0 13 124-136 3-15 (29)
124 1wfh_A Zinc finger (AN1-like) 29.6 42 0.0015 19.4 2.5 26 39-64 17-42 (64)
125 2elp_A Zinc finger protein 406 28.6 21 0.00073 16.6 1.0 13 123-135 9-21 (37)
126 2elq_A Zinc finger protein 406 28.5 20 0.00069 16.6 0.9 13 123-135 9-21 (36)
127 1fv5_A First zinc finger of U- 28.0 18 0.00061 17.9 0.6 13 123-135 8-20 (36)
128 2elv_A Zinc finger protein 406 27.6 22 0.00074 16.5 0.9 13 123-135 9-21 (36)
129 2elt_A Zinc finger protein 406 27.4 22 0.00075 16.3 0.9 13 123-135 9-21 (36)
130 2els_A Zinc finger protein 406 27.3 21 0.00072 16.5 0.8 13 123-135 9-21 (36)
131 1wg2_A Zinc finger (AN1-like) 27.2 47 0.0016 19.2 2.4 26 39-64 17-42 (64)
132 2ecl_A Ring-box protein 2; RNF 27.1 18 0.00063 21.4 0.7 12 9-20 14-25 (81)
133 2elo_A Zinc finger protein 406 26.7 20 0.00067 16.7 0.6 13 123-135 9-21 (37)
134 2ea6_A Ring finger protein 4; 26.6 15 0.00052 20.5 0.2 21 114-134 39-67 (69)
135 1chc_A Equine herpes virus-1 r 26.6 29 0.001 19.3 1.5 12 56-67 24-35 (68)
136 1wen_A Inhibitor of growth fam 26.5 60 0.002 18.9 2.9 45 10-67 16-65 (71)
137 2elm_A Zinc finger protein 406 26.4 20 0.00069 16.9 0.7 12 123-134 9-20 (37)
138 1njq_A Superman protein; zinc- 26.0 23 0.00078 16.8 0.8 13 123-135 6-18 (39)
139 2kfq_A FP1; protein, de novo p 24.8 16 0.00055 16.6 0.1 11 124-134 3-13 (32)
140 2yte_A Zinc finger protein 473 24.8 27 0.00093 16.7 1.0 13 123-135 10-22 (42)
141 3od8_A Poly [ADP-ribose] polym 24.6 9.6 0.00033 24.9 -1.0 17 9-25 37-53 (116)
142 1wfp_A Zinc finger (AN1-like) 24.4 56 0.0019 19.4 2.4 28 38-65 26-53 (74)
143 2ely_A Zinc finger protein 224 24.3 34 0.0011 16.9 1.3 14 123-136 12-25 (46)
144 2ytb_A Zinc finger protein 32; 23.8 30 0.001 16.6 1.0 13 123-135 11-23 (42)
145 2epv_A Zinc finger protein 268 23.7 28 0.00094 17.1 0.9 13 123-135 12-24 (44)
146 2eos_A B-cell lymphoma 6 prote 23.7 31 0.0011 16.6 1.1 13 123-135 11-23 (42)
147 2yu5_A Zinc finger protein 473 23.7 30 0.001 16.9 1.0 14 123-136 12-25 (44)
148 2cs2_A Poly [ADP-ribose] polym 23.4 15 0.00051 24.6 -0.3 17 9-25 26-42 (134)
149 2epc_A Zinc finger protein 32; 23.4 28 0.00097 16.7 0.9 13 123-135 11-23 (42)
150 2d8v_A Zinc finger FYVE domain 23.2 33 0.0011 19.9 1.2 14 55-68 25-38 (67)
151 2en7_A Zinc finger protein 268 23.2 28 0.00095 16.9 0.9 12 124-135 13-24 (44)
152 2el5_A Zinc finger protein 268 23.2 29 0.00098 16.7 0.9 13 123-135 10-22 (42)
153 2en2_A B-cell lymphoma 6 prote 23.0 28 0.00096 16.7 0.8 13 123-135 11-23 (42)
154 2emg_A Zinc finger protein 484 22.9 31 0.001 17.0 1.0 13 123-135 12-24 (46)
155 1wff_A Riken cDNA 2810002D23 p 22.8 54 0.0018 20.1 2.2 30 123-153 40-73 (85)
156 1wfl_A Zinc finger protein 216 22.8 52 0.0018 19.6 2.0 26 39-64 27-52 (74)
157 2eqg_A Tumor necrosis factor, 22.8 25 0.00086 18.7 0.6 17 53-69 23-39 (49)
158 2enh_A Zinc finger protein 28 22.7 33 0.0011 17.0 1.1 14 123-136 12-25 (46)
159 2enf_A Zinc finger protein 347 22.6 33 0.0011 16.9 1.1 13 123-135 12-24 (46)
160 2en3_A ZFP-95, zinc finger pro 22.5 32 0.0011 17.0 1.0 13 123-135 12-24 (46)
161 2eon_A ZFP-95, zinc finger pro 22.4 33 0.0011 17.0 1.1 13 123-135 12-24 (46)
162 3iuf_A Zinc finger protein UBI 22.0 30 0.001 17.6 0.8 11 124-134 8-18 (48)
163 2em6_A Zinc finger protein 224 22.0 34 0.0012 16.9 1.1 13 123-135 12-24 (46)
164 2eoy_A Zinc finger protein 473 22.0 33 0.0011 17.0 1.0 13 123-135 12-24 (46)
165 2yts_A Zinc finger protein 484 21.8 31 0.0011 16.9 0.9 13 123-135 12-24 (46)
166 2eof_A Zinc finger protein 268 21.8 30 0.001 16.8 0.8 13 123-135 12-24 (44)
167 2emb_A Zinc finger protein 473 21.8 30 0.001 16.9 0.8 13 123-135 12-24 (44)
168 2ytf_A Zinc finger protein 268 21.6 32 0.0011 16.9 0.9 13 123-135 12-24 (46)
169 2em3_A Zinc finger protein 28 21.6 32 0.0011 17.0 0.9 13 123-135 12-24 (46)
170 2ep3_A Zinc finger protein 484 21.6 32 0.0011 17.0 0.9 13 123-135 12-24 (46)
171 2ept_A Zinc finger protein 32; 21.5 32 0.0011 16.4 0.9 13 123-135 10-22 (41)
172 2eq2_A Zinc finger protein 347 21.4 32 0.0011 17.0 0.9 13 123-135 12-24 (46)
173 2emi_A Zinc finger protein 484 21.4 33 0.0011 16.9 0.9 13 123-135 12-24 (46)
174 2epw_A Zinc finger protein 268 21.3 35 0.0012 16.8 1.0 14 123-136 12-25 (46)
175 2en9_A Zinc finger protein 28 21.3 35 0.0012 16.9 1.0 13 123-135 12-24 (46)
176 2yu8_A Zinc finger protein 347 21.2 35 0.0012 16.8 1.0 14 123-136 12-25 (46)
177 2eow_A Zinc finger protein 347 21.2 32 0.0011 16.9 0.9 13 123-135 12-24 (46)
178 2yth_A Zinc finger protein 224 21.2 37 0.0013 16.8 1.1 13 123-135 12-24 (46)
179 2eox_A Zinc finger protein 473 21.1 29 0.001 16.9 0.7 14 123-136 12-25 (44)
180 2eoo_A ZFP-95, zinc finger pro 21.0 33 0.0011 16.9 0.9 13 123-135 12-24 (46)
181 2ep1_A Zinc finger protein 484 21.0 34 0.0012 16.8 0.9 13 123-135 12-24 (46)
182 2eoh_A Zinc finger protein 28 21.0 36 0.0012 16.8 1.0 13 123-135 12-24 (46)
183 2eov_A Zinc finger protein 484 21.0 37 0.0013 16.7 1.1 13 123-135 12-24 (46)
184 2eoj_A Zinc finger protein 268 20.9 29 0.001 16.9 0.6 13 123-135 12-24 (44)
185 2eq1_A Zinc finger protein 347 20.9 35 0.0012 16.8 0.9 13 123-135 12-24 (46)
186 2yrm_A B-cell lymphoma 6 prote 20.8 38 0.0013 16.5 1.1 13 123-135 10-22 (43)
187 2eps_A POZ-, at HOOK-, and zin 20.8 38 0.0013 17.6 1.1 13 123-135 41-53 (54)
188 2emx_A Zinc finger protein 268 20.7 35 0.0012 16.6 0.9 13 123-135 10-22 (44)
189 2emj_A Zinc finger protein 28 20.7 35 0.0012 16.9 0.9 13 123-135 12-24 (46)
190 2yrj_A Zinc finger protein 473 20.7 34 0.0012 16.8 0.9 13 123-135 12-24 (46)
191 2emk_A Zinc finger protein 28 20.7 37 0.0013 16.7 1.1 13 123-135 12-24 (46)
192 2eml_A Zinc finger protein 28 20.6 34 0.0012 16.8 0.9 13 123-135 12-24 (46)
193 2em4_A Zinc finger protein 28 20.6 34 0.0012 16.9 0.9 13 123-135 12-24 (46)
194 2ytp_A Zinc finger protein 484 20.5 35 0.0012 16.8 0.9 13 123-135 12-24 (46)
195 4av1_A Poly [ADP-ribose] polym 20.4 21 0.00073 26.0 0.0 17 9-25 142-158 (223)
196 2eor_A Zinc finger protein 224 20.3 34 0.0012 16.8 0.8 13 123-135 12-24 (46)
197 2eom_A ZFP-95, zinc finger pro 20.3 38 0.0013 16.8 1.0 13 123-135 12-24 (46)
198 1weu_A Inhibitor of growth fam 20.2 71 0.0024 19.7 2.4 43 11-66 37-84 (91)
199 2eop_A Zinc finger protein 268 20.2 38 0.0013 16.6 1.0 13 123-135 12-24 (46)
200 2yto_A Zinc finger protein 484 20.1 36 0.0012 16.8 0.9 13 123-135 12-24 (46)
201 2el6_A Zinc finger protein 268 20.1 36 0.0012 16.8 0.9 13 123-135 12-24 (46)
202 2yti_A Zinc finger protein 347 20.0 34 0.0012 16.8 0.8 13 123-135 12-24 (46)
203 2em7_A Zinc finger protein 224 20.0 36 0.0012 16.8 0.9 13 123-135 12-24 (46)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.95 E-value=7.7e-28 Score=176.78 Aligned_cols=148 Identities=23% Similarity=0.429 Sum_probs=114.6
Q ss_pred ccCCCCccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCCc-CCCCCCC
Q 040725 4 KSFIGTQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNI-NKNFQSP 82 (164)
Q Consensus 4 ~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~~-~~~~~~c 82 (164)
|+..++.++|..|+++|..++.+.++++.||++||+|..|+.+|....|+.+++++||..||.++|+++|.- .++.
T Consensus 1 m~~~~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~--- 77 (192)
T 1b8t_A 1 MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGA--- 77 (192)
T ss_dssp CCCCCCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCC---
T ss_pred CCCCCCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCcccccccccc---
Confidence 677778899999999998788889999999999999999999999988999999999999999999999741 1110
Q ss_pred cccccCCCC-----------C--ccCC----------CCCCCCCcccc-ccccccccCccccccceeecCCCCCCCCCCe
Q 040725 83 ARLVEKSTP-----------E--LTRS----------PSKAASIKTVC-PLEKVAVESQAYHKTCFKCSHGGCSISPSNY 138 (164)
Q Consensus 83 ~~~~~~~~~-----------~--~~~~----------~~~~~~~~~~~-~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f 138 (164)
.....+.+. . ...+ ..+.+.++..| ..+.|.++++.||++||+|..|+++|.++.|
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~ 157 (192)
T 1b8t_A 78 GTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTL 157 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSE
T ss_pred ccEecCCCcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcc
Confidence 000000000 0 0011 11233445554 4577899999999999999999999998899
Q ss_pred eccCC------Chhhhcccccc
Q 040725 139 VALEG------NYNHLIKFASM 154 (164)
Q Consensus 139 ~~~~g------~y~~l~~~~~~ 154 (164)
+.+|| ||.++|+++-.
T Consensus 158 ~~~~g~~yC~~cy~~~f~~kc~ 179 (192)
T 1b8t_A 158 ADKDGEIYCKGCYAKNFGPKGF 179 (192)
T ss_dssp EEETTEEEEHHHHHHHTCCCCC
T ss_pred cccCCEEeCHHHHHHhcCCcCC
Confidence 99999 99999987653
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.94 E-value=3.2e-27 Score=162.48 Aligned_cols=113 Identities=16% Similarity=0.343 Sum_probs=99.5
Q ss_pred ccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCCcCCCCCCCcccccCC
Q 040725 10 QQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNINKNFQSPARLVEKS 89 (164)
Q Consensus 10 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~~~~~~~~c~~~~~~~ 89 (164)
.++|.+|+++|..++.+.++++.||++||+|..|+.+|....|+.++|++||..||.++++++|. .|
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~------~C------- 69 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQ------GC------- 69 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCT------TT-------
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCc------cc-------
Confidence 47899999999878889999999999999999999999988899999999999999999999884 56
Q ss_pred CCCccCCCCCCCCCcccccc--ccccccCcccc--ccceeecCCCCCCCCCCeeccCC------Chhhhc
Q 040725 90 TPELTRSPSKAASIKTVCPL--EKVAVESQAYH--KTCFKCSHGGCSISPSNYVALEG------NYNHLI 149 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~H--~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~ 149 (164)
+.+|.. ..|.++++.|| ++||+|..|+++|.++.|+..|| ||.++|
T Consensus 70 --------------~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 70 --------------HNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp --------------CSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred --------------CCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 333332 34889999999 99999999999999999999999 666654
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.94 E-value=5.8e-27 Score=162.19 Aligned_cols=116 Identities=18% Similarity=0.312 Sum_probs=99.0
Q ss_pred ccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcC--CCeeeeCCeeeecchhhhhccC--CCCcCCCCCCCccc
Q 040725 10 QQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYCKPHFEQLFKE--SGNINKNFQSPARL 85 (164)
Q Consensus 10 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~~C~~c~~~~~~~--~c~~~~~~~~c~~~ 85 (164)
..+|..|+++|...+.+.++++.||++||+|..|+.+|.. ..|+.++|++||..||.+++++ +|. .|
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~------~C--- 72 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCA------SC--- 72 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECT------TT---
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChh------hc---
Confidence 4689999999976667899999999999999999999964 5788999999999999999988 663 56
Q ss_pred ccCCCCCccCCCCCCCCCccccc-cc-cccccCccccccceeecCCCCCC-CCCCeeccCC------Chhhhcccc
Q 040725 86 VEKSTPELTRSPSKAASIKTVCP-LE-KVAVESQAYHKTCFKCSHGGCSI-SPSNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~~H~~CF~C~~C~~~l-~~~~f~~~~g------~y~~l~~~~ 152 (164)
+.+|. .+ .|.++++.||++||+|..|+++| .++.|+..|| ||.+++++.
T Consensus 73 ------------------~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~~ 130 (131)
T 2xjy_A 73 ------------------DKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKIN 130 (131)
T ss_dssp ------------------CCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHHH
T ss_pred ------------------CCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhcc
Confidence 33333 23 37899999999999999999999 4777999999 899888754
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.91 E-value=1.2e-25 Score=164.51 Aligned_cols=122 Identities=16% Similarity=0.361 Sum_probs=98.8
Q ss_pred CccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcC--CCeeeeCCeeeecchhhhhccC--CCCcCCCCCCCcc
Q 040725 9 TQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYCKPHFEQLFKE--SGNINKNFQSPAR 84 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~~C~~c~~~~~~~--~c~~~~~~~~c~~ 84 (164)
..++|..|++.|...+.+.++++.||.+||+|..|+.+|.. ..|+.++|++||..||.++|++ +| ..|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C------~~C~- 76 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAC------SACG- 76 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEEC------TTTC-
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCcc------ccCC-
Confidence 45789999999976667899999999999999999999986 5788999999999999999988 56 3562
Q ss_pred cccCCCCCccCCCCCCCCCcccccccc-ccccCccccccceeecCCCCCCC-CCCeeccCC------Chhhhcccccccc
Q 040725 85 LVEKSTPELTRSPSKAASIKTVCPLEK-VAVESQAYHKTCFKCSHGGCSIS-PSNYVALEG------NYNHLIKFASMKR 156 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~H~~CF~C~~C~~~l~-~~~f~~~~g------~y~~l~~~~~~~~ 156 (164)
+.|...+. |.++++.||++||+|..|+++|. +..|+..+| ||.+++..+.+..
T Consensus 77 -------------------~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~ 137 (188)
T 1rut_X 77 -------------------QSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNS 137 (188)
T ss_dssp -------------------CEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC------
T ss_pred -------------------CccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhccccccc
Confidence 22323343 78999999999999999999995 667999999 9999988776543
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.91 E-value=8.1e-25 Score=157.63 Aligned_cols=116 Identities=18% Similarity=0.292 Sum_probs=95.6
Q ss_pred CccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCCcCCCCCCCcccccC
Q 040725 9 TQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNINKNFQSPARLVEK 88 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~~~~~~~~c~~~~~~ 88 (164)
+..+|..|++.|...+.+.++++.||.+||+|..|+.+|.... +.++|++||..||.++|+++|. .|
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~------~C------ 71 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCA------AC------ 71 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCT------TT------
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeeccccccccccccc------cc------
Confidence 4579999999998766789999999999999999999998876 4789999999999999999984 46
Q ss_pred CCCCccCCCCCCCCCccccc-ccc-ccccCccccccceeecCCCCCCC-CCCeec-cCC------Chhhhcccc
Q 040725 89 STPELTRSPSKAASIKTVCP-LEK-VAVESQAYHKTCFKCSHGGCSIS-PSNYVA-LEG------NYNHLIKFA 152 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~-~~~-v~~~~~~~H~~CF~C~~C~~~l~-~~~f~~-~~g------~y~~l~~~~ 152 (164)
+..|. .+. +.++++.||++||+|..|+++|. ++.|+. .|| ||.++++..
T Consensus 72 ---------------~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~ 130 (169)
T 2rgt_A 72 ---------------QLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGG 130 (169)
T ss_dssp ---------------CCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC
T ss_pred ---------------ccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhcc
Confidence 22222 233 57999999999999999999997 556654 577 898887653
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.91 E-value=1.8e-24 Score=157.62 Aligned_cols=115 Identities=18% Similarity=0.322 Sum_probs=94.2
Q ss_pred CCCccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCCcCCCCCCCcccc
Q 040725 7 IGTQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNINKNFQSPARLV 86 (164)
Q Consensus 7 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~~~~~~~~c~~~~ 86 (164)
..+.++|..|+++|...+.+.++++.||.+||+|..|+.+|....| .++|++||..||.++|+++|. .|
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~------~C---- 125 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCA------AC---- 125 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCT------TT----
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccc------cC----
Confidence 3456899999999987667899999999999999999999988764 799999999999999999984 46
Q ss_pred cCCCCCccCCCCCCCCCccccc-ccc-ccccCccccccceeecCCCCCCC-CCCee-ccCC------Chhhhc
Q 040725 87 EKSTPELTRSPSKAASIKTVCP-LEK-VAVESQAYHKTCFKCSHGGCSIS-PSNYV-ALEG------NYNHLI 149 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~-~~~-v~~~~~~~H~~CF~C~~C~~~l~-~~~f~-~~~g------~y~~l~ 149 (164)
+..|. .+. +.++++.||++||+|..|+++|. +..|+ ..|| ||.++.
T Consensus 126 -----------------~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 126 -----------------QLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp -----------------CCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred -----------------CCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHhh
Confidence 22222 232 57899999999999999999997 55665 4577 776654
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.91 E-value=1.6e-24 Score=143.51 Aligned_cols=96 Identities=15% Similarity=0.324 Sum_probs=83.6
Q ss_pred CCccccccCCceeec-ccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCCcCCCCCCCcccc
Q 040725 8 GTQQKYKVYEKTVYP-VEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNINKNFQSPARLV 86 (164)
Q Consensus 8 ~~~~~C~~C~~~i~~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~~~~~~~~c~~~~ 86 (164)
+...+|.+|+++|.. ++.+.++++.||.+||+|..|+++|....|+.++|++||..||.++++++|. .|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~------~C---- 72 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCK------GC---- 72 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCS------SS----
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccc------cC----
Confidence 356899999999974 6779999999999999999999999888899999999999999999999884 56
Q ss_pred cCCCCCccCCCCCCCCCccccc-cc-cccccCccccccceeecCCC
Q 040725 87 EKSTPELTRSPSKAASIKTVCP-LE-KVAVESQAYHKTCFKCSHGG 130 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~~H~~CF~C~~C~ 130 (164)
+.+|. ++ .|.++|+.||++||+|..|+
T Consensus 73 -----------------~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 73 -----------------FKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp -----------------CCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred -----------------CCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 33334 33 48899999999999999996
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=1e-19 Score=124.28 Aligned_cols=107 Identities=15% Similarity=0.269 Sum_probs=89.6
Q ss_pred CccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcC--CCeeeeCCeeeecchhhhhccC--CCCcCCCCCCCcc
Q 040725 9 TQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYCKPHFEQLFKE--SGNINKNFQSPAR 84 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~~C~~c~~~~~~~--~c~~~~~~~~c~~ 84 (164)
..++|.+|+++|...+.+.++++.||++||+|..|+.+|.. ..|+.++|++||..||.++|++ +|. .|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~------~C-- 75 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGG------SG-- 75 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSS------CS--
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccc------cC--
Confidence 45799999999987777899999999999999999999973 5788999999999999999999 663 56
Q ss_pred cccCCCCCccCCCCCCCCCccccccccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhccccccc
Q 040725 85 LVEKSTPELTRSPSKAASIKTVCPLEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFASMK 155 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~~~~ 155 (164)
+.+|..+.|+++|+ ..|.++.|+.+|| ||.++++..+++
T Consensus 76 -------------------~~~I~~~~~~~~g~-------------~~l~g~~f~~~~~~~yC~~~~~~~~~~~g~~ 120 (122)
T 1m3v_A 76 -------------------GHMGSGGDVMVVGE-------------PTLMGGEFGDEDERLITRLENTQFDAANGID 120 (122)
T ss_dssp -------------------SCCSCCEESSSSSS-------------SSCCSCTTCCTTCCCCEECTTTTTTCCSCCC
T ss_pred -------------------CCCcCchheEEcCC-------------cCCCCCccEecCCEeEccCcchhchhhcCCC
Confidence 44445545666663 3688999999999 999999887765
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=6.4e-18 Score=114.03 Aligned_cols=102 Identities=12% Similarity=0.180 Sum_probs=82.3
Q ss_pred CccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcC--CCeeeeCCeeeecchhhhhccCCCCcCCCCCCCcccc
Q 040725 9 TQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYCKPHFEQLFKESGNINKNFQSPARLV 86 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~~C~~c~~~~~~~~c~~~~~~~~c~~~~ 86 (164)
+.++|.+|+++|...+.+.++++.||++||+|+.|+.+|.. ..|+.++|++||..||.++|+++|.. |..
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~------c~~-- 73 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHM------GSG-- 73 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSS------CBS--
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCc------CCC--
Confidence 46789999999987768999999999999999999999985 47889999999999999999999852 210
Q ss_pred cCCCCCccCCCCCCCCCccccccccccccCccccccceeecCCCCC-CCCCCeeccCC------Chhhhccccccc
Q 040725 87 EKSTPELTRSPSKAASIKTVCPLEKVAVESQAYHKTCFKCSHGGCS-ISPSNYVALEG------NYNHLIKFASMK 155 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~H~~CF~C~~C~~~-l~~~~f~~~~g------~y~~l~~~~~~~ 155 (164)
..+ |. |+.+ |.++.|++.|| ||.++.++.+++
T Consensus 74 -----------------~~~-----~~---------------~~~~~~~g~~f~~~~~~~~C~~~~~~~~~~~g~~ 112 (114)
T 1j2o_A 74 -----------------GDV-----MV---------------VGEPTLMGGEFGDEDERLITRLENTQFDAANGID 112 (114)
T ss_dssp -----------------CSC-----CC---------------SSCSSTTSSBCCCSSSCCCEEEECTTCCCTTSSC
T ss_pred -----------------Cce-----eE---------------cCCccCCCCeeEEcCCEeecchhhhccccccCCC
Confidence 111 11 2334 67888999999 888888877765
No 10
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=1.2e-17 Score=104.79 Aligned_cols=72 Identities=31% Similarity=0.570 Sum_probs=67.2
Q ss_pred CccCCCCccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeec-chhhhhccCCCC
Q 040725 3 AKSFIGTQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCK-PHFEQLFKESGN 74 (164)
Q Consensus 3 ~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~-~c~~~~~~~~c~ 74 (164)
++.|....++|..|+++|...+.+.++++.||.+||+|..|+.+|....|+.+++++||. .||.++|+++|.
T Consensus 2 s~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~ 74 (76)
T 2cu8_A 2 SSGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPS 74 (76)
T ss_dssp CCSCCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCS
T ss_pred ccccCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccC
Confidence 577888889999999999878899999999999999999999999988899999999999 799999999984
No 11
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.72 E-value=3.7e-18 Score=108.39 Aligned_cols=71 Identities=25% Similarity=0.555 Sum_probs=58.0
Q ss_pred ccCCCCccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 4 KSFIGTQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 4 ~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
|+|.++.++|..|+++|...+.+.++++.||.+||+|..|+.+|....|+.+++++||..||.++|+++|.
T Consensus 1 m~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 71 (81)
T 1a7i_A 1 MPNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGY 71 (81)
T ss_dssp -------CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----
T ss_pred CCCCCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCccc
Confidence 78888899999999999888899999999999999999999999988899999999999999999999985
No 12
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=6.1e-17 Score=104.94 Aligned_cols=72 Identities=46% Similarity=0.948 Sum_probs=65.5
Q ss_pred CccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCCcCCCCC
Q 040725 9 TQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNINKNFQ 80 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~~~~~~~ 80 (164)
...+|..|++.|...+.+.++++.||.+||+|..|+.+|....|+.+++++||..||.++|+++|.+.++++
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g 85 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFG 85 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcC
Confidence 467999999999877889999999999999999999999988889999999999999999999997655544
No 13
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=1.2e-16 Score=101.21 Aligned_cols=67 Identities=25% Similarity=0.464 Sum_probs=61.2
Q ss_pred CCCccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 7 IGTQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 7 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
..+..+|..|++.|..++.+.++++.||++||+|..|+.+|.. .|+.+++++||..||.++|+++|.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~ 78 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPS 78 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCST
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCC
Confidence 3456899999999987888999999999999999999999985 688999999999999999999984
No 14
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.8e-16 Score=99.43 Aligned_cols=72 Identities=22% Similarity=0.451 Sum_probs=63.0
Q ss_pred CccCCCCccccccCCceeeccc-EEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 3 AKSFIGTQQKYKVYEKTVYPVE-QLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 3 ~~~~~~~~~~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
.|+......+|.+|++.|...+ .+.++++.||.+||+|..|+.+|..+.|+.++|++||..||.++|+++|.
T Consensus 4 ~~~~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 4 FMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp -CCSCCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred hhccCCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 4666777899999999997555 47899999999999999999999988899999999999999999999873
No 15
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=8.1e-17 Score=101.82 Aligned_cols=70 Identities=13% Similarity=0.267 Sum_probs=60.5
Q ss_pred CCeeeecchhhhhccCCCCcCCCCCCCcccccCCCCCccCCCCCCCCCccccccccccccCccccccceeecCCCCCCCC
Q 040725 56 EGVLYCKPHFEQLFKESGNINKNFQSPARLVEKSTPELTRSPSKAASIKTVCPLEKVAVESQAYHKTCFKCSHGGCSISP 135 (164)
Q Consensus 56 ~g~~~C~~c~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~ 135 (164)
+|++||+.||.++++++|. .| +.+|.++.|.++++.||++||+|..|+++|.+
T Consensus 1 gg~~yC~~cy~~~~~~~C~------~C---------------------~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~ 53 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCA------RC---------------------SKTLTQGGVTYRDQPWHRECLVCTGCQTPLAG 53 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCT------TT---------------------CCCCCSCCEESSSSEECTTTCBCSSSCCBCTT
T ss_pred CCcEEcHHHHccccCCcCC------CC---------------------CCEecCcEEEECCchhhhhhCCcccCCCcCCC
Confidence 5789999999999988874 56 44445566899999999999999999999998
Q ss_pred CCeeccCC------Chhhhcccc
Q 040725 136 SNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 136 ~~f~~~~g------~y~~l~~~~ 152 (164)
+.|+..|| ||.++++++
T Consensus 54 ~~~~~~~~~~yC~~cy~~~f~~~ 76 (80)
T 2cuq_A 54 QQFTSRDEDPYCVACFGELFASG 76 (80)
T ss_dssp CCEEECSSSEEEHHHHHHHTTCS
T ss_pred CeeEeECCEEECHHHHHHHcCCC
Confidence 89999999 999988765
No 16
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.5e-16 Score=96.83 Aligned_cols=65 Identities=15% Similarity=0.415 Sum_probs=59.9
Q ss_pred CccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 9 TQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
+.++|..|+++|. ++.+.++++.||.+||+|..|+.+|....|+.+++++||..||.++|+++|.
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 68 (69)
T 2cur_A 4 GSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSS 68 (69)
T ss_dssp CCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCC
T ss_pred CcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCC
Confidence 5679999999995 5678999999999999999999999988899999999999999999999873
No 17
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=101.15 Aligned_cols=70 Identities=13% Similarity=0.310 Sum_probs=58.7
Q ss_pred CCeeeecchhhhhccCCCCcCCCCCCCcccccCCCCCccCCCCCCCCCccccc--cccccccCccccccceeecCCCCCC
Q 040725 56 EGVLYCKPHFEQLFKESGNINKNFQSPARLVEKSTPELTRSPSKAASIKTVCP--LEKVAVESQAYHKTCFKCSHGGCSI 133 (164)
Q Consensus 56 ~g~~~C~~c~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~H~~CF~C~~C~~~l 133 (164)
+|++||+.||.++++++|. .| +..|. ...|.++++.||++||+|..|+++|
T Consensus 1 ~g~~yC~~~y~~~~~~~C~------~C---------------------~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L 53 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCA------EC---------------------QQLIGHDSRELFYEDRHFHEGCFRCCRCQRSL 53 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCT------TT---------------------CCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBC
T ss_pred CCceechhHhCcccCCcCc------cC---------------------CCccccCcEEEEeCCccccccCCeecCCCCcc
Confidence 5789999999999998874 56 33333 3347789999999999999999999
Q ss_pred CCCCeeccCC------Chhhhcccc
Q 040725 134 SPSNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 134 ~~~~f~~~~g------~y~~l~~~~ 152 (164)
.++.|+..+| ||.++++++
T Consensus 54 ~~~~f~~~~~~~~C~~c~~~~~~~~ 78 (82)
T 2ehe_A 54 ADEPFTCQDSELLCNDCYCSAFSSG 78 (82)
T ss_dssp SSCCEEEETTEEEETTTSSCCGGGS
T ss_pred CCCccEeeCCEEECHHHHhhhcCCC
Confidence 9999999999 898888764
No 18
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=3.2e-16 Score=96.57 Aligned_cols=65 Identities=18% Similarity=0.442 Sum_probs=59.9
Q ss_pred CccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 9 TQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
..++|..|+++|. ++.+.++++.||++||+|..|+.+|....|+.+++++||..||.++|+++|.
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 68 (70)
T 2d8z_A 4 GSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPS 68 (70)
T ss_dssp CCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCT
T ss_pred CCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccC
Confidence 4578999999995 5679999999999999999999999888899999999999999999999984
No 19
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=3.5e-16 Score=101.13 Aligned_cols=67 Identities=22% Similarity=0.456 Sum_probs=61.5
Q ss_pred CCCccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 7 IGTQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 7 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
....++|..|++.| .++.+.++++.||++||+|..|+.+|....|+.+++++||..||.++|+++|.
T Consensus 22 ~~~~~~C~~C~~~I-~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~ 88 (90)
T 2dar_A 22 GKRTPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPS 88 (90)
T ss_dssp TTCCCBBSSSCCBC-CSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCC
T ss_pred CCCCCCCccCCCEe-cceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCC
Confidence 34567899999999 57889999999999999999999999988898999999999999999999985
No 20
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=4.3e-16 Score=96.49 Aligned_cols=66 Identities=27% Similarity=0.579 Sum_probs=60.7
Q ss_pred CccccccCCceeecc-cEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 9 TQQKYKVYEKTVYPV-EQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
...+|..|+++|... +.+.++++.||.+||+|..|+.+|....|+.+++++||..||.++|+++|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPS 70 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCC
Confidence 357899999999764 678999999999999999999999988899999999999999999999985
No 21
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=1.3e-16 Score=100.90 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=60.1
Q ss_pred CCeeeecchhhhhccCCCCcCCCCCCCcccccCCCCCccCCCCCCCCCccccccccccccCccccccceeecCCCCCCCC
Q 040725 56 EGVLYCKPHFEQLFKESGNINKNFQSPARLVEKSTPELTRSPSKAASIKTVCPLEKVAVESQAYHKTCFKCSHGGCSISP 135 (164)
Q Consensus 56 ~g~~~C~~c~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~ 135 (164)
+|++||+.||.++++++|. .| +..|.++.|.++++.||++||+|..|+++|.+
T Consensus 1 gg~~yC~~~y~~~~~~~C~------~C---------------------~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~ 53 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCG------GC---------------------NRPVLENYLSAMDTVWHPECFVCGDCFTSFST 53 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCT------TT---------------------CCBCCSSCEEETTEEECTTTCBCSSSCCBSCS
T ss_pred CCCccchhHHhhhcCCccc------cC---------------------CCeecceeEEECCCeEecCcCChhhCCCCCCC
Confidence 4789999999999988874 56 44445566899999999999999999999998
Q ss_pred CCeeccCC------Chhhhcccc
Q 040725 136 SNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 136 ~~f~~~~g------~y~~l~~~~ 152 (164)
..|+.+|| ||.+++++.
T Consensus 54 ~~~~~~~~~~yC~~~y~~~f~~~ 76 (80)
T 1x3h_A 54 GSFFELDGRPFCELHYHHRRGSG 76 (80)
T ss_dssp SCCEESSSCEECHHHHHHHHSSS
T ss_pred CcEEeECCEEECHHHHHHHcCCC
Confidence 88999999 999988764
No 22
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.62 E-value=3.8e-16 Score=95.20 Aligned_cols=63 Identities=19% Similarity=0.413 Sum_probs=58.2
Q ss_pred CccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCC
Q 040725 9 TQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKES 72 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~ 72 (164)
..++|.+|+++|. ++.+.++++.||.+||+|..|+.+|....|+.+++++||..||.++|+++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 3578999999996 77899999999999999999999999888999999999999999999774
No 23
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=5.6e-16 Score=97.04 Aligned_cols=64 Identities=31% Similarity=0.646 Sum_probs=60.0
Q ss_pred cccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeec-chhhhhccCCCC
Q 040725 11 QKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCK-PHFEQLFKESGN 74 (164)
Q Consensus 11 ~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~-~c~~~~~~~~c~ 74 (164)
++|.+|+++|..++.+.++++.||.+||+|..|+.+|....|+.+++++||. .||.++|+++|.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~ 65 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGF 65 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCC
Confidence 5799999999878899999999999999999999999988899999999999 699999999985
No 24
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=3.7e-16 Score=97.89 Aligned_cols=65 Identities=12% Similarity=0.311 Sum_probs=59.9
Q ss_pred ccccccCCceeec---ccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 10 QQKYKVYEKTVYP---VEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 10 ~~~C~~C~~~i~~---~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
.++|..|+++|.. .+.+.++++.||.+||+|..|+.+|....|+.+++++||..||.++|+++|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~ 72 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISG 72 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCC
Confidence 4789999999963 3779999999999999999999999988899999999999999999999985
No 25
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=7e-16 Score=95.51 Aligned_cols=65 Identities=18% Similarity=0.533 Sum_probs=60.1
Q ss_pred ccccccCCceeecc-cEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 10 QQKYKVYEKTVYPV-EQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 10 ~~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
.++|..|++.|... ..+.++++.||.+||+|..|+.+|....|+.+++++||..||.++|+++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPS 70 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCC
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCC
Confidence 47899999999776 468999999999999999999999988899999999999999999999984
No 26
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=6e-16 Score=95.88 Aligned_cols=66 Identities=14% Similarity=0.265 Sum_probs=59.4
Q ss_pred CCccccccCCceeec---ccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCC
Q 040725 8 GTQQKYKVYEKTVYP---VEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG 73 (164)
Q Consensus 8 ~~~~~C~~C~~~i~~---~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c 73 (164)
.+..+|..|+++|.. .+.+.++++.||.+||+|..|+.+|....|+.+++++||..||.++|+|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 356899999999974 366899999999999999999999998888899999999999999998874
No 27
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=5e-16 Score=98.01 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=60.0
Q ss_pred CCCccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCC
Q 040725 7 IGTQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG 73 (164)
Q Consensus 7 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c 73 (164)
.....+|..|++.|. ++.+.++++.||.+||+|..|+.+|....|+.+++++||..||.++|+|++
T Consensus 12 ~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g 77 (79)
T 1x62_A 12 AQKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77 (79)
T ss_dssp CCCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCC
T ss_pred CCCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 345679999999996 468999999999999999999999988788999999999999999999886
No 28
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.5e-15 Score=93.51 Aligned_cols=65 Identities=14% Similarity=0.315 Sum_probs=59.4
Q ss_pred CCccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCC
Q 040725 8 GTQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG 73 (164)
Q Consensus 8 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c 73 (164)
++..+|..|++.|. ++.+.++++.||++||+|..|+.+|....|+.+++++||..||.++++++.
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 67 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGP 67 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCS
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCC
Confidence 45689999999995 677999999999999999999999999888889999999999999998764
No 29
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.3e-16 Score=98.25 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=51.6
Q ss_pred CCeeeecchhhhhccCCCCcCCCCCCCcccccCCCCCccCCCCCCCCCcccccc-----ccccccCccccccceeecCCC
Q 040725 56 EGVLYCKPHFEQLFKESGNINKNFQSPARLVEKSTPELTRSPSKAASIKTVCPL-----EKVAVESQAYHKTCFKCSHGG 130 (164)
Q Consensus 56 ~g~~~C~~c~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~H~~CF~C~~C~ 130 (164)
++++||..||.++++++|. .| +..|.. +.|.++++.||++||+|..|+
T Consensus 1 g~~~yC~~cy~~~~~~~C~------~C---------------------~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~ 53 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCA------GC---------------------KNPITGFGKGSSVVAYEGQSWHDYCFHCKKCS 53 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCS------SS---------------------CCCCCCCSSCCCEEEETTEEEETTTCBCSSSC
T ss_pred CCCeEchhHhchhhCccCc------cc---------------------CCcccCCCCCceeEEECcceeCcccCEehhcC
Confidence 4689999999999998874 56 333332 558899999999999999999
Q ss_pred CCCCCCCeeccCC
Q 040725 131 CSISPSNYVALEG 143 (164)
Q Consensus 131 ~~l~~~~f~~~~g 143 (164)
++|.+..|+..||
T Consensus 54 ~~L~~~~f~~~~~ 66 (77)
T 2egq_A 54 VNLANKRFVFHQE 66 (77)
T ss_dssp CBCTTSCCCEETT
T ss_pred CCCCCCccEeECC
Confidence 9999999999999
No 30
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.1e-15 Score=97.13 Aligned_cols=67 Identities=28% Similarity=0.605 Sum_probs=59.7
Q ss_pred cCCCCccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCee--eeCCeeeecchhhhhccC
Q 040725 5 SFIGTQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYS--SMEGVLYCKPHFEQLFKE 71 (164)
Q Consensus 5 ~~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~--~~~g~~~C~~c~~~~~~~ 71 (164)
+..++..+|.+|++.|+..+.+.++++.||.+||+|..|+.+|....|. .+++++||+.||.+++++
T Consensus 10 ~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 10 QEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp CCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCC
T ss_pred cCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcC
Confidence 4455678999999999888888999999999999999999999988887 479999999999988754
No 31
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=2.5e-15 Score=96.91 Aligned_cols=64 Identities=22% Similarity=0.380 Sum_probs=59.0
Q ss_pred CccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCC
Q 040725 9 TQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG 73 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c 73 (164)
...+|..|++.|. ++.+.++++.||.+||+|..|+..|....|+.+++++||..||.++|++++
T Consensus 24 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~ 87 (89)
T 1x64_A 24 RMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87 (89)
T ss_dssp SCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCC
T ss_pred cCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 4578999999996 477899999999999999999999998889999999999999999999986
No 32
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=6.8e-16 Score=97.96 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=60.1
Q ss_pred CCeeeecchhhhhccCCCCcCCCCCCCcccccCCCCCccCCCCCCCCCcccccccc-ccccCccccccceeecCCCCCCC
Q 040725 56 EGVLYCKPHFEQLFKESGNINKNFQSPARLVEKSTPELTRSPSKAASIKTVCPLEK-VAVESQAYHKTCFKCSHGGCSIS 134 (164)
Q Consensus 56 ~g~~~C~~c~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~H~~CF~C~~C~~~l~ 134 (164)
++.+||+.||.++++++|. .|. +.|.+++. |.++++.||++||+|..|+++|.
T Consensus 1 ~~~~yC~~cy~~~~~~~C~------~C~--------------------~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~ 54 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCK------GCF--------------------KAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIG 54 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCS------SSC--------------------CBCCSSSCEEECSSCEEETTTCCCSSSCCCCT
T ss_pred CCCcCchhHHccccCCcCc------cCC--------------------cccccCceEEEECccccccccCchhhCCCccC
Confidence 3679999999999988874 562 23333344 88999999999999999999999
Q ss_pred CCCeeccCC------Chhhhcccccc
Q 040725 135 PSNYVALEG------NYNHLIKFASM 154 (164)
Q Consensus 135 ~~~f~~~~g------~y~~l~~~~~~ 154 (164)
+..|+..|| ||.++++++..
T Consensus 55 ~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 55 TGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp TSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CCccEeeCCEEECHHHHHHHhCCCCC
Confidence 999999999 99999987653
No 33
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=3.4e-15 Score=94.68 Aligned_cols=65 Identities=26% Similarity=0.513 Sum_probs=59.9
Q ss_pred ccccccCCceeeccc-EEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 10 QQKYKVYEKTVYPVE-QLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 10 ~~~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
..+|.+|++.|..++ .+.++++.||.+||+|..|+++|....|+.+++++||..||.++|+++++
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 479999999997655 48999999999999999999999988899999999999999999999875
No 34
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=3.7e-15 Score=94.06 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=59.0
Q ss_pred CCCCccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 6 FIGTQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 6 ~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
-..+.++|..|++.|. ++.+.++++.||.+||+|..|+.+|.... +.+++++||..||.++|+|+++
T Consensus 11 ~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 11 RGLGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSC
T ss_pred hccCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCC
Confidence 3445689999999996 67789999999999999999999998775 5899999999999999988753
No 35
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.6e-15 Score=95.26 Aligned_cols=65 Identities=15% Similarity=0.428 Sum_probs=59.2
Q ss_pred ccccccCCceeec-ccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 10 QQKYKVYEKTVYP-VEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 10 ~~~C~~C~~~i~~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
.++|..|+++|.. +..+.++++.||.+||+|+.|+.+|....|+.+++++||..||.++|+++|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~ 80 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPS 80 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSC
T ss_pred CCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCC
Confidence 4689999999973 4567889999999999999999999988899999999999999999999874
No 36
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.4e-15 Score=96.31 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=57.1
Q ss_pred CCeeeecchhhhhccCCCCcCCCCCCCcccccCCCCCccCCCCCCCCCccccccccccccCccccccceeecCCCCCCCC
Q 040725 56 EGVLYCKPHFEQLFKESGNINKNFQSPARLVEKSTPELTRSPSKAASIKTVCPLEKVAVESQAYHKTCFKCSHGGCSISP 135 (164)
Q Consensus 56 ~g~~~C~~c~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~ 135 (164)
+|++||+.||. +++++| ..| +.+|.+..|.++++.||++||+|..|+++|.+
T Consensus 2 ~g~~yC~~~y~-~~~~~C------~~C---------------------~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 53 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKC------ATC---------------------SQPILDRILRAMGKAYHPGCFTCVVCHRGLDG 53 (81)
T ss_dssp CCCCCCCCCCC-SSCCBC------TTT---------------------CCBCCSCCEEETTEEECTTTCBCSSSCCBCTT
T ss_pred cCCEECHHHhh-cCCCcc------ccC---------------------CCeecceeEEECCccccHHhcCcccCCCccCC
Confidence 67999999998 677776 356 44445556899999999999999999999999
Q ss_pred CCeecc-CC------Chhhhcccc
Q 040725 136 SNYVAL-EG------NYNHLIKFA 152 (164)
Q Consensus 136 ~~f~~~-~g------~y~~l~~~~ 152 (164)
..|+.. || ||.++|+++
T Consensus 54 ~~f~~~~~g~~yC~~cy~~~f~~~ 77 (81)
T 2dlo_A 54 IPFTVDATSQIHCIEDFHRKFASG 77 (81)
T ss_dssp SCEECCTTCCCEEHHHHHHHTTSS
T ss_pred CeeEECCCCEEECHHHHHHHhcCc
Confidence 889876 67 999988764
No 37
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.9e-15 Score=95.68 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=58.1
Q ss_pred CCeeeecchhhhhccCCCCcCCCCCCCcccccCCCCCccCCCCCCCCCccccccccccccCccccccceeecCCCCCCC-
Q 040725 56 EGVLYCKPHFEQLFKESGNINKNFQSPARLVEKSTPELTRSPSKAASIKTVCPLEKVAVESQAYHKTCFKCSHGGCSIS- 134 (164)
Q Consensus 56 ~g~~~C~~c~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~- 134 (164)
++.+||+.||.++|+++|. .| +.+|.++.|.++++.||++||+|..|+++|.
T Consensus 1 g~~~yC~~~y~~~~~~~C~------~C---------------------~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 53 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCH------GC---------------------SLLMTGPFMVAGEFKYHPECFACMSCKVIIED 53 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCT------TT---------------------CCBCCSCCBCCTTCCBCTTSCBCTTTCCBCCT
T ss_pred CCCccchhHHhhhcCCcCc------cC---------------------CCCcCceEEEECCceeccccCCccCCCCccCC
Confidence 3579999999999998874 56 4444566689999999999999999999996
Q ss_pred CCCee-ccCC------Chhhhccccc
Q 040725 135 PSNYV-ALEG------NYNHLIKFAS 153 (164)
Q Consensus 135 ~~~f~-~~~g------~y~~l~~~~~ 153 (164)
+..|+ +.+| ||.++++...
T Consensus 54 g~~f~~~~~~~~~C~~c~~~~~~~~~ 79 (81)
T 1x6a_A 54 GDAYALVQHATLYCGKCHNEVVSGPS 79 (81)
T ss_dssp TSCEEECSSSCEEEHHHHHHHHCTTS
T ss_pred CCcEEEeeCCEEECHHHHHHHhcCCC
Confidence 56787 5787 8888887653
No 38
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=3.1e-15 Score=94.45 Aligned_cols=64 Identities=20% Similarity=0.470 Sum_probs=59.4
Q ss_pred ccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 10 QQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 10 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
.++|.+|+++|. ++.+.++++.||.+||+|..|+.+|....|+.+++++||..||.++|+++|.
T Consensus 15 ~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~ 78 (80)
T 1x3h_A 15 SPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPS 78 (80)
T ss_dssp SCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCC
T ss_pred CCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCC
Confidence 478999999996 4778999999999999999999999988899999999999999999999984
No 39
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=4.2e-15 Score=94.13 Aligned_cols=66 Identities=21% Similarity=0.423 Sum_probs=59.2
Q ss_pred CCccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeee-CCeeeecchhhhhccCCCC
Q 040725 8 GTQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSM-EGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 8 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~-~g~~~C~~c~~~~~~~~c~ 74 (164)
...++|.+|+++|. ++.+.++++.||++||+|..|+.+|....|... ++++||..||.++|+++|.
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~ 79 (81)
T 2dlo_A 13 ATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPS 79 (81)
T ss_dssp SSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSC
T ss_pred cCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCC
Confidence 45689999999996 567999999999999999999999987777765 7899999999999999984
No 40
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=4e-15 Score=93.96 Aligned_cols=65 Identities=20% Similarity=0.429 Sum_probs=59.5
Q ss_pred CccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 9 TQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
..++|..|++.|. ++.+.++++.||.+||+|..|+.+|....|+.+++++||..||.++|+++|.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 78 (80)
T 2cuq_A 14 FAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPS 78 (80)
T ss_dssp SSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTT
T ss_pred cCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCC
Confidence 3578999999995 5678999999999999999999999887899999999999999999999984
No 41
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=2.5e-15 Score=95.14 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=57.8
Q ss_pred CeeeecchhhhhccCCCCcCCCCCCCcccccCCCCCccCCCCCCCCCccccccccccccCccccccceeecCCCCCCCCC
Q 040725 57 GVLYCKPHFEQLFKESGNINKNFQSPARLVEKSTPELTRSPSKAASIKTVCPLEKVAVESQAYHKTCFKCSHGGCSISPS 136 (164)
Q Consensus 57 g~~~C~~c~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~~ 136 (164)
+.+||..||.++|+++|. .| +..|.++.|.++++.||++||+|..|+++|..+
T Consensus 2 ~~~yC~~dy~~~~~~~C~------~C---------------------~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~ 54 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCF------SC---------------------DQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPG 54 (81)
T ss_dssp CCCCCCSCGGGSCCCBCT------TT---------------------CCBCCSCCEEETTEEECTTTSSCSSSCCCCCSS
T ss_pred CCCcchHHHHhHhCCcCc------cc---------------------cCEeccceEEECCceeCccCCccccCCCCCCCC
Confidence 468999999999998874 56 444455669999999999999999999999876
Q ss_pred CeeccCC-------Chhhhcccccc
Q 040725 137 NYVALEG-------NYNHLIKFASM 154 (164)
Q Consensus 137 ~f~~~~g-------~y~~l~~~~~~ 154 (164)
.|+..+| +|.+++.+.+.
T Consensus 55 ~~~~~~~~~~~C~~C~~~~~~~~~s 79 (81)
T 1v6g_A 55 DRVTFNGKECMCQKCSLPVSVSGPS 79 (81)
T ss_dssp SCEEEETTEEEEHHHHSCCSSCCCC
T ss_pred CEEEeCCCCEEChhhhcccCCCCCC
Confidence 6766666 78888777654
No 42
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=8.2e-15 Score=90.67 Aligned_cols=63 Identities=19% Similarity=0.395 Sum_probs=56.8
Q ss_pred CccccccCCceeecc-cEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccC
Q 040725 9 TQQKYKVYEKTVYPV-EQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKE 71 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~ 71 (164)
..++|.+|+++|... ..+.++++.||.+||+|..|+.+|....|+.+++++||..||.++|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 568999999999764 468999999999999999999999877899999999999999998843
No 43
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.52 E-value=1.1e-14 Score=89.87 Aligned_cols=62 Identities=26% Similarity=0.638 Sum_probs=56.4
Q ss_pred CccccccCCceeecccE-EEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhcc
Q 040725 9 TQQKYKVYEKTVYPVEQ-LSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFK 70 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~-~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~ 70 (164)
...+|.+|++.|...+. +.++++.||.+||+|..|+.+|....|+.++|++||..||.++|+
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 45799999999987775 689999999999999999999988888899999999999999874
No 44
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.7e-14 Score=89.59 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=55.7
Q ss_pred CccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCc-CCCeeeeCCeeeecchhhhhccCC
Q 040725 9 TQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLK-LSNYSSMEGVLYCKPHFEQLFKES 72 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~~g~~~C~~c~~~~~~~~ 72 (164)
..++|.+|+++|. ++.+.++++.||++||+|..|+.+|. ...|+.+++++||..||.++++..
T Consensus 4 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 4 GSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp SCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred CcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 4578999999995 57789999999999999999999998 567888999999999999887543
No 45
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.47 E-value=3.1e-14 Score=97.07 Aligned_cols=61 Identities=20% Similarity=0.406 Sum_probs=55.2
Q ss_pred ccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCc--CCCeeeeCCeeeecchhhhhcc
Q 040725 10 QQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLK--LSNYSSMEGVLYCKPHFEQLFK 70 (164)
Q Consensus 10 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~--~~~~~~~~g~~~C~~c~~~~~~ 70 (164)
..+|.+|+++|...+.+.++++.||..||+|..|+.+|. ...|+.++|++||..||.++|+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 468999999998777799999999999999999999997 3578899999999999999874
No 46
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.46 E-value=6e-14 Score=85.13 Aligned_cols=59 Identities=20% Similarity=0.535 Sum_probs=53.2
Q ss_pred ccccccCCceeec-ccEEEeCCcccC--CCCcccCCCCCcCcCCCeeeeCCeeee-cchhhhh
Q 040725 10 QQKYKVYEKTVYP-VEQLSDDGVVYH--KSCFKCSHCKGTLKLSNYSSMEGVLYC-KPHFEQL 68 (164)
Q Consensus 10 ~~~C~~C~~~i~~-~~~~~~~~~~~H--~~Cf~C~~C~~~L~~~~~~~~~g~~~C-~~c~~~~ 68 (164)
.++|.+|+++|.. ++.+.++++.|| .+||+|..|+.+|....|+.++|++|| ..||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 3689999999976 477999999999 999999999999998889999999999 8888764
No 47
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=7.5e-14 Score=88.24 Aligned_cols=64 Identities=17% Similarity=0.344 Sum_probs=56.3
Q ss_pred CccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcC-CCee-eeCCeeeecchhhhhccCCC
Q 040725 9 TQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKL-SNYS-SMEGVLYCKPHFEQLFKESG 73 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~-~~~~-~~~g~~~C~~c~~~~~~~~c 73 (164)
..++|..|+++|. ++.+.++++.||.+||+|..|+++|.. ..|. .+++++||..||.++|++.+
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~ 79 (81)
T 1x6a_A 14 FGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPS 79 (81)
T ss_dssp SSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTS
T ss_pred cCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCC
Confidence 3468999999996 777899999999999999999999975 4566 58999999999999998765
No 48
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.43 E-value=1.2e-13 Score=100.96 Aligned_cols=66 Identities=27% Similarity=0.634 Sum_probs=61.2
Q ss_pred CccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhccCCCC
Q 040725 9 TQQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
+..+|.+|+++|...+.+.++++.||.+||+|..|+.+|....|+.+++++||..||.++|+++|.
T Consensus 114 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~ 179 (192)
T 1b8t_A 114 GSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGF 179 (192)
T ss_dssp CCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCC
T ss_pred CCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCC
Confidence 356799999999878888999999999999999999999888899999999999999999999985
No 49
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=86.81 Aligned_cols=60 Identities=18% Similarity=0.435 Sum_probs=53.7
Q ss_pred CccccccCCceeec----ccEEEeCCcccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhhh
Q 040725 9 TQQKYKVYEKTVYP----VEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQL 68 (164)
Q Consensus 9 ~~~~C~~C~~~i~~----~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~ 68 (164)
..++|.+|+++|.. .+.+.++++.||.+||+|..|+.+|....|+.+++++||..||.++
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred hCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 35789999999973 3779999999999999999999999988899999999999999753
No 50
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.42 E-value=2.3e-13 Score=92.73 Aligned_cols=66 Identities=21% Similarity=0.462 Sum_probs=58.1
Q ss_pred cccccCCceeeccc-EEEeCCcccCCCCcccCCCCCcCcC-CCeeeeCCeeeecchhhhhccCCCCcC
Q 040725 11 QKYKVYEKTVYPVE-QLSDDGVVYHKSCFKCSHCKGTLKL-SNYSSMEGVLYCKPHFEQLFKESGNIN 76 (164)
Q Consensus 11 ~~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~~~L~~-~~~~~~~g~~~C~~c~~~~~~~~c~~~ 76 (164)
.+|..|++.|...+ .+.++++.||..||+|..|+++|.. ..|+..++++||..||.++++++|.+.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~ 76 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSG 76 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCC
Confidence 48999999997655 4699999999999999999999954 468889999999999999999998653
No 51
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.35 E-value=3.1e-13 Score=82.07 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=43.1
Q ss_pred ccccccccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhcccc
Q 040725 104 KTVCPLEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 104 ~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~ 152 (164)
+..|.++.|.++|+.||++||+|..|+++|.++.|++.|| ||.++|+++
T Consensus 12 ~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 12 RRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp TEECCSCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCEecceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 4555566799999999999999999999999999999999 999998764
No 52
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.29 E-value=1.9e-12 Score=80.29 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=42.6
Q ss_pred ccccccccccccCccccccceeecCCCCCCC-CCCeeccCC------Chhhhccccc
Q 040725 104 KTVCPLEKVAVESQAYHKTCFKCSHGGCSIS-PSNYVALEG------NYNHLIKFAS 153 (164)
Q Consensus 104 ~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~-~~~f~~~~g------~y~~l~~~~~ 153 (164)
+..|.++.|.++++.||++||+|..|+++|. +..|+..+| +|..++....
T Consensus 12 ~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~~ 68 (73)
T 1wig_A 12 EKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDS 68 (73)
T ss_dssp CCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSSC
T ss_pred CCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcccc
Confidence 5555566699999999999999999999998 788999998 8888877644
No 53
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.29 E-value=1.6e-12 Score=81.13 Aligned_cols=43 Identities=12% Similarity=0.313 Sum_probs=39.5
Q ss_pred ccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhcccc
Q 040725 110 EKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 110 ~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~ 152 (164)
+.|.++++.||++||+|..|+++|.+..|+..|| ||.+++++.
T Consensus 22 ~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~ 70 (76)
T 1x68_A 22 KFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI 70 (76)
T ss_dssp CEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCS
T ss_pred eeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCc
Confidence 5589999999999999999999999999999999 998888765
No 54
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.28 E-value=2.3e-12 Score=82.98 Aligned_cols=50 Identities=16% Similarity=0.311 Sum_probs=44.4
Q ss_pred ccccccccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhccccc
Q 040725 104 KTVCPLEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFAS 153 (164)
Q Consensus 104 ~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~~ 153 (164)
+.+|.++.|.++++.||++||+|..|+++|.+..|++.|| ||.++|+++-
T Consensus 32 ~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c 87 (90)
T 2dar_A 32 NQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGP 87 (90)
T ss_dssp CCBCCSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCC
T ss_pred CCEecceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCC
Confidence 5566667799999999999999999999999999999999 9999998753
No 55
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.27 E-value=3e-12 Score=78.52 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=43.2
Q ss_pred ccccccccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhcccc
Q 040725 104 KTVCPLEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 104 ~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~ 152 (164)
+..|.++.|.++++.||++||+|..|+++|.+..|++.|| ||.++++++
T Consensus 12 ~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~ 66 (70)
T 2d8z_A 12 KKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASG 66 (70)
T ss_dssp CCBCCSSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCC
T ss_pred CCeeccceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccc
Confidence 5555566699999999999999999999999999999999 999988765
No 56
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.27 E-value=3.1e-12 Score=80.73 Aligned_cols=62 Identities=16% Similarity=0.286 Sum_probs=52.3
Q ss_pred ccccccCCceeecccEEEeCCcccCCCCcccCCCCCcCcCCCeeee-CCeeeecchhhhhccCC
Q 040725 10 QQKYKVYEKTVYPVEQLSDDGVVYHKSCFKCSHCKGTLKLSNYSSM-EGVLYCKPHFEQLFKES 72 (164)
Q Consensus 10 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~-~g~~~C~~c~~~~~~~~ 72 (164)
.++|..|++.|. ++.+.++++.||.+||+|..|+++|..+.++.. ++.+||..||.+++...
T Consensus 15 ~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~~ 77 (81)
T 1v6g_A 15 GTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSG 77 (81)
T ss_dssp CCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSCC
T ss_pred CCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCCC
Confidence 468999999996 678999999999999999999999987776655 44579999998776443
No 57
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.26 E-value=3.3e-12 Score=78.17 Aligned_cols=49 Identities=16% Similarity=0.411 Sum_probs=43.1
Q ss_pred ccccccccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhcccc
Q 040725 104 KTVCPLEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 104 ~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~ 152 (164)
+..|.++.|.++++.||++||+|..|+++|.+..|++.|| ||.++++++
T Consensus 12 ~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~ 66 (69)
T 2cur_A 12 NKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGP 66 (69)
T ss_dssp CCCCCTTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCS
T ss_pred CCEeCcceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCC
Confidence 4555566799999999999999999999999999999999 999988764
No 58
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.26 E-value=4.2e-12 Score=78.31 Aligned_cols=44 Identities=16% Similarity=0.383 Sum_probs=39.7
Q ss_pred ccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhccccc
Q 040725 110 EKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFAS 153 (164)
Q Consensus 110 ~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~~ 153 (164)
..|.++++.||++||+|..|+++|.+..|+..|| ||.+++++.+
T Consensus 22 ~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 22 KYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred ceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 4488999999999999999999999999999999 9999987753
No 59
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.24 E-value=5.1e-12 Score=77.53 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=42.6
Q ss_pred ccccccccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhcccc
Q 040725 104 KTVCPLEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 104 ~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~ 152 (164)
+..|.++.|.++++.||++||+|..|+++|....|+..|| ||.+++++.
T Consensus 12 ~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~ 66 (70)
T 2d8x_A 12 GEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASG 66 (70)
T ss_dssp CCBCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCC
T ss_pred CCEecceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCC
Confidence 4555566699999999999999999999999999999999 888888764
No 60
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.23 E-value=1.1e-11 Score=90.28 Aligned_cols=63 Identities=22% Similarity=0.516 Sum_probs=53.3
Q ss_pred ccccCCceeeccc-EEEeCCcccCCCCcccCCCCCcCcC-CCeeeeCCeeeecchhhhhccCCCC
Q 040725 12 KYKVYEKTVYPVE-QLSDDGVVYHKSCFKCSHCKGTLKL-SNYSSMEGVLYCKPHFEQLFKESGN 74 (164)
Q Consensus 12 ~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~~~L~~-~~~~~~~g~~~C~~c~~~~~~~~c~ 74 (164)
+|..|++.|...+ .+.++++.||..||+|..|+++|.. ..|+..++++||..||.+++++++.
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~ 135 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHL 135 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC----
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhccccc
Confidence 7999999997666 4789999999999999999999964 4688899999999999999988874
No 61
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.22 E-value=3.3e-12 Score=80.26 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=45.7
Q ss_pred CCCccccccccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhccccc
Q 040725 101 ASIKTVCPLEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFAS 153 (164)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~~ 153 (164)
+.++..|.++.|.++++.||++||+|..|+++|.+..|+.+|| ||.++|+++.
T Consensus 19 ~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g 77 (79)
T 1x62_A 19 DKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77 (79)
T ss_dssp SSSCCCCCSSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCC
T ss_pred ccCCCCccCcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 3336666667799999999999999999999999888999999 9999998764
No 62
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.22 E-value=5.4e-12 Score=77.75 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=39.5
Q ss_pred ccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhcccc
Q 040725 110 EKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 110 ~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~ 152 (164)
+.|.++++.||++||+|..|+++|.+..|+..|| ||.++++++
T Consensus 20 ~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~ 68 (72)
T 1wyh_A 20 RKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASG 68 (72)
T ss_dssp CEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCC
T ss_pred cEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCc
Confidence 4588999999999999999999999999999999 999988765
No 63
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.22 E-value=5.4e-12 Score=86.61 Aligned_cols=61 Identities=21% Similarity=0.425 Sum_probs=54.2
Q ss_pred ccccCCceeeccc-EEEeCCcccCCCCcccCCCCCcCc-CCCeeeeCCeeeecchhhhhccCC
Q 040725 12 KYKVYEKTVYPVE-QLSDDGVVYHKSCFKCSHCKGTLK-LSNYSSMEGVLYCKPHFEQLFKES 72 (164)
Q Consensus 12 ~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~~g~~~C~~c~~~~~~~~ 72 (164)
+|..|+++|...+ .+.++++.||.+||+|..|+++|. +..|+..++++||..||.++++++
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~~ 130 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKIN 130 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHHH
T ss_pred ChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhcc
Confidence 8999999997655 579999999999999999999995 456888999999999999988754
No 64
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.21 E-value=1.8e-11 Score=77.44 Aligned_cols=52 Identities=21% Similarity=0.424 Sum_probs=42.8
Q ss_pred CCcccc-ccccccccCccccccceeecCCCCCCCCCCee--ccCC------Chhhhccccc
Q 040725 102 SIKTVC-PLEKVAVESQAYHKTCFKCSHGGCSISPSNYV--ALEG------NYNHLIKFAS 153 (164)
Q Consensus 102 ~~~~~~-~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~--~~~g------~y~~l~~~~~ 153 (164)
.++..| ..+.|.++++.||++||+|..|+++|....|+ ++|| ||.+|+....
T Consensus 20 ~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 20 LCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp SSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred ccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 334444 66789999999999999999999999999988 4688 9998887643
No 65
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.20 E-value=9.3e-12 Score=79.96 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=46.2
Q ss_pred CCCCccccccccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhccccc
Q 040725 100 AASIKTVCPLEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFAS 153 (164)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~~ 153 (164)
.+.++..|.++.|.++++.||++||+|..|+++|.+..|+.+|| ||.++|+++.
T Consensus 28 C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~ 87 (89)
T 1x64_A 28 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87 (89)
T ss_dssp CTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCC
T ss_pred cccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 33346666677799999999999999999999999888999999 9999998764
No 66
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.20 E-value=6.5e-12 Score=77.37 Aligned_cols=42 Identities=19% Similarity=0.475 Sum_probs=38.8
Q ss_pred cccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhcccc
Q 040725 111 KVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 111 ~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~ 152 (164)
.|.++|+.||++||+|..|+++|.+..|++.|| ||.+++++.
T Consensus 21 ~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~ 68 (72)
T 1x4k_A 21 KMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASG 68 (72)
T ss_dssp EEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSC
T ss_pred EEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCC
Confidence 588999999999999999999999999999999 999888765
No 67
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.19 E-value=1.3e-11 Score=77.83 Aligned_cols=48 Identities=19% Similarity=0.452 Sum_probs=41.4
Q ss_pred cccc-ccccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhcccc
Q 040725 104 KTVC-PLEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 104 ~~~~-~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~ 152 (164)
+..| .++.|.++++.||++||+|..|+++|.+ .|+++|| ||.++|+++
T Consensus 22 ~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~ 76 (80)
T 2dj7_A 22 KEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSG 76 (80)
T ss_dssp CCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCC
T ss_pred CCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCC
Confidence 4444 4667999999999999999999999986 6999999 999999875
No 68
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.14 E-value=1.7e-11 Score=77.34 Aligned_cols=50 Identities=14% Similarity=0.318 Sum_probs=41.6
Q ss_pred cccc-ccccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhccccc
Q 040725 104 KTVC-PLEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFAS 153 (164)
Q Consensus 104 ~~~~-~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~~ 153 (164)
+++| ..+.|.++++.||++||+|..|+++|.+..|+..|| ||.++++++-
T Consensus 14 ~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c 70 (81)
T 1a7i_A 14 GRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKG 70 (81)
T ss_dssp CCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC---
T ss_pred CccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcc
Confidence 4444 566799999999999999999999999999999999 9999988764
No 69
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.14 E-value=2.3e-11 Score=75.72 Aligned_cols=49 Identities=24% Similarity=0.461 Sum_probs=40.9
Q ss_pred ccccc-cccccccCccccccceeecCCCCCCCCCCeeccCC-------Chhhhcccc
Q 040725 104 KTVCP-LEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG-------NYNHLIKFA 152 (164)
Q Consensus 104 ~~~~~-~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g-------~y~~l~~~~ 152 (164)
+..|. .+.|.++++.||++||+|..|+++|.+..|+++|| ||.++|+++
T Consensus 16 ~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~k 72 (76)
T 2cu8_A 16 DKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSG 72 (76)
T ss_dssp CCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSS
T ss_pred CCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccc
Confidence 34444 67799999999999999999999999989999998 566777654
No 70
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.14 E-value=4.6e-11 Score=75.04 Aligned_cols=48 Identities=15% Similarity=0.339 Sum_probs=40.9
Q ss_pred ccccccccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhcccc
Q 040725 104 KTVCPLEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 104 ~~~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~ 152 (164)
+..|.++.|.++|+.||++||+|..|+++|.+..| ++|| ||.++|.+.
T Consensus 22 ~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~f~p~ 75 (79)
T 2cor_A 22 HAIIDEQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMGVSG 75 (79)
T ss_dssp CCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EETTEEECHHHHHTTSCCS
T ss_pred CCEecceEEEECcceeCCCCCEeCCCCCccCCCCE-eECCEEeCHHHHHHhCCCC
Confidence 55556667999999999999999999999998865 8888 998888764
No 71
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.13 E-value=3.3e-11 Score=74.19 Aligned_cols=41 Identities=22% Similarity=0.441 Sum_probs=37.5
Q ss_pred cccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhccc
Q 040725 111 KVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKF 151 (164)
Q Consensus 111 ~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~ 151 (164)
.|.++++.||++||+|..|+++|.+..|+.+|| ||.+++..
T Consensus 21 ~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 21 GVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp CEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred EEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 588999999999999999999999889999999 88888753
No 72
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.12 E-value=1.6e-11 Score=75.38 Aligned_cols=43 Identities=28% Similarity=0.614 Sum_probs=37.6
Q ss_pred cccc-ccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhcc
Q 040725 108 PLEK-VAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIK 150 (164)
Q Consensus 108 ~~~~-v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~ 150 (164)
..+. |.++|+.||++||+|..|+++|.+..|+..|| ||.+||+
T Consensus 23 ~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 23 PAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 3454 67999999999999999999998889999999 8888874
No 73
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.10 E-value=7.4e-11 Score=80.36 Aligned_cols=60 Identities=18% Similarity=0.504 Sum_probs=53.5
Q ss_pred ccccccCCceeecc-cEEEeCCcccC--CCCcccCCCCCcCcCCCeeeeCCeeeecchhhhhc
Q 040725 10 QQKYKVYEKTVYPV-EQLSDDGVVYH--KSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLF 69 (164)
Q Consensus 10 ~~~C~~C~~~i~~~-~~~~~~~~~~H--~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~ 69 (164)
.++|.+|+++|... ..+.++++.|| .+||+|..|+++|.+..|+..++++||..++.++|
T Consensus 63 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 63 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp CCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 46899999999764 45899999999 99999999999999878889999999998888765
No 74
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.09 E-value=4.9e-11 Score=76.84 Aligned_cols=49 Identities=33% Similarity=0.695 Sum_probs=43.0
Q ss_pred ccccccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhcccccc
Q 040725 106 VCPLEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFASM 154 (164)
Q Consensus 106 ~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~~~ 154 (164)
|...+.|.++++.||++||+|..|+++|....|+.+|| ||.++++++..
T Consensus 25 I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~ 79 (91)
T 2d8y_A 25 VYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGN 79 (91)
T ss_dssp CCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSC
T ss_pred cCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcC
Confidence 33346789999999999999999999999988999999 99999988754
No 75
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.08 E-value=5.4e-11 Score=74.07 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=41.2
Q ss_pred ccccccccccCccccccceeecCCCCCCCCCCeeccCC-------Chhhhcccccc
Q 040725 106 VCPLEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG-------NYNHLIKFASM 154 (164)
Q Consensus 106 ~~~~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g-------~y~~l~~~~~~ 154 (164)
|..++.|.++|+.||++||+|..|+++|.++.|++.|| ||.++++++-.
T Consensus 10 I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~ 65 (76)
T 1iml_A 10 VYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGF 65 (76)
T ss_dssp CCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCS
T ss_pred EECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCC
Confidence 33367799999999999999999999999989999998 56777776543
No 76
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.07 E-value=6.7e-11 Score=73.71 Aligned_cols=44 Identities=25% Similarity=0.517 Sum_probs=39.1
Q ss_pred ccc-ccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhcccc
Q 040725 109 LEK-VAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 109 ~~~-v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~ 152 (164)
.+. +.++|+.||++||+|..|+++|.+..|+..|| ||.+++++.
T Consensus 24 ~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~ 74 (77)
T 1g47_A 24 AEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPC 74 (77)
T ss_dssp TTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC
T ss_pred CceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcc
Confidence 444 67999999999999999999999888999999 999988764
No 77
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.06 E-value=4.6e-11 Score=72.20 Aligned_cols=35 Identities=23% Similarity=0.604 Sum_probs=32.7
Q ss_pred cccccccCcccc--ccceeecCCCCCCCCCCeeccCC
Q 040725 109 LEKVAVESQAYH--KTCFKCSHGGCSISPSNYVALEG 143 (164)
Q Consensus 109 ~~~v~~~~~~~H--~~CF~C~~C~~~l~~~~f~~~~g 143 (164)
++.|.++|+.|| ++||+|..|+++|.+..|+.+||
T Consensus 16 ~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g 52 (65)
T 2iyb_E 16 VQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEG 52 (65)
T ss_dssp SCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETT
T ss_pred ceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECC
Confidence 356999999999 99999999999999999999999
No 78
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.04 E-value=1.3e-10 Score=83.15 Aligned_cols=63 Identities=24% Similarity=0.471 Sum_probs=53.2
Q ss_pred ccccccCCceeecccE-EEeCCcccCCCCcccCCCCCcCcCC-Cee-eeCCeeeecchhhhhccCC
Q 040725 10 QQKYKVYEKTVYPVEQ-LSDDGVVYHKSCFKCSHCKGTLKLS-NYS-SMEGVLYCKPHFEQLFKES 72 (164)
Q Consensus 10 ~~~C~~C~~~i~~~~~-~~~~~~~~H~~Cf~C~~C~~~L~~~-~~~-~~~g~~~C~~c~~~~~~~~ 72 (164)
.++|..|++.|...+. +.+++..||.+||+|..|+.+|..+ .|+ ..+|++||..||.+++...
T Consensus 65 ~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~ 130 (169)
T 2rgt_A 65 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGG 130 (169)
T ss_dssp SCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC
T ss_pred cccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhcc
Confidence 3689999999977665 5899999999999999999999754 455 4689999999999887543
No 79
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.03 E-value=1.3e-10 Score=78.01 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=41.8
Q ss_pred ccccccc-cccccCccccccceeecCCCCCCCC--CCeeccCC------Chhhhcccc
Q 040725 104 KTVCPLE-KVAVESQAYHKTCFKCSHGGCSISP--SNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 104 ~~~~~~~-~v~~~~~~~H~~CF~C~~C~~~l~~--~~f~~~~g------~y~~l~~~~ 152 (164)
+.+|.+. .|.++++.||++||+|..|+++|.. ..|+.+|| ||.++|+++
T Consensus 10 ~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 10 QQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp CSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSC
T ss_pred CCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcc
Confidence 4444444 6899999999999999999999974 68999999 999999887
No 80
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.03 E-value=7.6e-11 Score=80.12 Aligned_cols=42 Identities=21% Similarity=0.493 Sum_probs=37.4
Q ss_pred ccccCccccccceeecCCCCCC-CCCCeeccCC------Chhhhccccc
Q 040725 112 VAVESQAYHKTCFKCSHGGCSI-SPSNYVALEG------NYNHLIKFAS 153 (164)
Q Consensus 112 v~~~~~~~H~~CF~C~~C~~~l-~~~~f~~~~g------~y~~l~~~~~ 153 (164)
|.++++.||++||+|..|+++| .+..|+..+| ||.+++..+.
T Consensus 25 ~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~ 73 (123)
T 2l3k_A 25 MRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKING 73 (123)
T ss_dssp CCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHT
T ss_pred EEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcccc
Confidence 6899999999999999999999 5667999999 9999887654
No 81
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.02 E-value=1.5e-10 Score=75.78 Aligned_cols=44 Identities=18% Similarity=0.347 Sum_probs=39.5
Q ss_pred cccccccCccccccceeecCCCCCCCCCCeeccCC------Chhhhcccc
Q 040725 109 LEKVAVESQAYHKTCFKCSHGGCSISPSNYVALEG------NYNHLIKFA 152 (164)
Q Consensus 109 ~~~v~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~g------~y~~l~~~~ 152 (164)
++.|.++|+.||++||+|..|+++|.+..|+.+|| ||.++++++
T Consensus 19 ~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~ 68 (101)
T 2cup_A 19 SKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPK 68 (101)
T ss_dssp SCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCB
T ss_pred ceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCc
Confidence 45588999999999999999999999989999999 898887654
No 82
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=78.72 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=42.1
Q ss_pred CCCCCccccccc-cccccCccccccceeecCCCCCCC--CCCeeccCC------Chhhhcc
Q 040725 99 KAASIKTVCPLE-KVAVESQAYHKTCFKCSHGGCSIS--PSNYVALEG------NYNHLIK 150 (164)
Q Consensus 99 ~~~~~~~~~~~~-~v~~~~~~~H~~CF~C~~C~~~l~--~~~f~~~~g------~y~~l~~ 150 (164)
+.+.++.+|.+. .|.++++.||++||+|..|+++|. +..|+.+|| ||.++|+
T Consensus 63 ~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 63 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp BBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred cCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 334445555555 489999999999999999999996 568999999 8888874
No 83
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.92 E-value=2.7e-10 Score=77.29 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=40.4
Q ss_pred ccccccc-cccccCccccccceeecCCCCCCC--CCCeeccCC------Chhhhccc
Q 040725 104 KTVCPLE-KVAVESQAYHKTCFKCSHGGCSIS--PSNYVALEG------NYNHLIKF 151 (164)
Q Consensus 104 ~~~~~~~-~v~~~~~~~H~~CF~C~~C~~~l~--~~~f~~~~g------~y~~l~~~ 151 (164)
+.+|... .|.++++.||++||+|..|+++|. +..|+.+|| ||.++|++
T Consensus 12 ~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~ 68 (122)
T 1m3v_A 12 GGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN 68 (122)
T ss_dssp SSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC
T ss_pred CCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC
Confidence 3444443 488999999999999999999996 467999999 99999987
No 84
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=98.87 E-value=1.2e-09 Score=79.02 Aligned_cols=60 Identities=25% Similarity=0.489 Sum_probs=50.6
Q ss_pred ccccccCCceeecccE-EEeCCcccCCCCcccCCCCCcCcCC-Cee-eeCCeeeecchhhhhc
Q 040725 10 QQKYKVYEKTVYPVEQ-LSDDGVVYHKSCFKCSHCKGTLKLS-NYS-SMEGVLYCKPHFEQLF 69 (164)
Q Consensus 10 ~~~C~~C~~~i~~~~~-~~~~~~~~H~~Cf~C~~C~~~L~~~-~~~-~~~g~~~C~~c~~~~~ 69 (164)
.++|..|+++|...+. +.++++.||..||+|..|+++|..+ .|+ ..++++||..||.++.
T Consensus 119 ~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 119 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp SCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred ccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHhh
Confidence 4689999999976664 5899999999999999999999754 455 4689999999998753
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.11 E-value=5e-07 Score=46.19 Aligned_cols=28 Identities=32% Similarity=0.593 Sum_probs=26.6
Q ss_pred cccccCCceeecccEEEeCCcccCCCCc
Q 040725 11 QKYKVYEKTVYPVEQLSDDGVVYHKSCF 38 (164)
Q Consensus 11 ~~C~~C~~~i~~~~~~~~~~~~~H~~Cf 38 (164)
.+|..|++.|+..|.+.++|+.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 5899999999999999999999999997
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.88 E-value=7.1e-06 Score=41.81 Aligned_cols=21 Identities=48% Similarity=0.809 Sum_probs=19.9
Q ss_pred ccccccccccccCccccccce
Q 040725 104 KTVCPLEKVAVESQAYHKTCF 124 (164)
Q Consensus 104 ~~~~~~~~v~~~~~~~H~~CF 124 (164)
+.|++.|+|.++|+.||..||
T Consensus 11 k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 11 KIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp SBCCGGGCCCSSSSCCCGGGC
T ss_pred CEEecceeEEECCeEecccCC
Confidence 788999999999999999998
No 87
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=63.35 E-value=4.5 Score=22.82 Aligned_cols=30 Identities=20% Similarity=0.470 Sum_probs=22.8
Q ss_pred ccCCCCCcCcCCCeeeeCCeeee-cchhhhh
Q 040725 39 KCSHCKGTLKLSNYSSMEGVLYC-KPHFEQL 68 (164)
Q Consensus 39 ~C~~C~~~L~~~~~~~~~g~~~C-~~c~~~~ 68 (164)
.|..|+..+....-+.++|+.|| +.|....
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~gH 39 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADGH 39 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHTS
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHccC
Confidence 46788888877677789999998 6776543
No 88
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=61.76 E-value=2.9 Score=30.11 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=25.8
Q ss_pred CcccCCCCCcCcCCCeeeeCCeeeecchhhh
Q 040725 37 CFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQ 67 (164)
Q Consensus 37 Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~ 67 (164)
-..|..|+-......-...+|+.+|..|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 4569999998877666678999999999865
No 89
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=54.66 E-value=2.2 Score=27.66 Aligned_cols=23 Identities=13% Similarity=0.382 Sum_probs=16.0
Q ss_pred cCccccccce--------eecCCCCCCCCCC
Q 040725 115 ESQAYHKTCF--------KCSHGGCSISPSN 137 (164)
Q Consensus 115 ~~~~~H~~CF--------~C~~C~~~l~~~~ 137 (164)
=|+.||..|. .|..|...|..+.
T Consensus 97 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 97 CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 3666776665 6888988886554
No 90
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.56 E-value=4.1 Score=24.36 Aligned_cols=17 Identities=0% Similarity=0.083 Sum_probs=12.1
Q ss_pred CCCCccccccCCceeec
Q 040725 6 FIGTQQKYKVYEKTVYP 22 (164)
Q Consensus 6 ~~~~~~~C~~C~~~i~~ 22 (164)
|......|..|...|..
T Consensus 11 y~~~i~~C~IC~~~i~~ 27 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQ 27 (74)
T ss_dssp CSSSSCBCSSSCCBCSS
T ss_pred ccCCCCcCcchhhHccc
Confidence 44455789999888853
No 91
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=49.13 E-value=5.4 Score=24.37 Aligned_cols=28 Identities=21% Similarity=0.542 Sum_probs=12.4
Q ss_pred cccCCCCCcCcCCCee---eeCCeeeecchh
Q 040725 38 FKCSHCKGTLKLSNYS---SMEGVLYCKPHF 65 (164)
Q Consensus 38 f~C~~C~~~L~~~~~~---~~~g~~~C~~c~ 65 (164)
+.|..|...|++.-|. .....-||.+|-
T Consensus 16 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred eEeecchhhhccCceeeCCCccCCeeecccc
Confidence 3445555555444443 133344444443
No 92
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.47 E-value=12 Score=21.60 Aligned_cols=12 Identities=0% Similarity=-0.042 Sum_probs=5.9
Q ss_pred CCeeeecchhhh
Q 040725 56 EGVLYCKPHFEQ 67 (164)
Q Consensus 56 ~g~~~C~~c~~~ 67 (164)
=+..||..|..+
T Consensus 44 C~H~fh~~Ci~~ 55 (75)
T 1x4j_A 44 CNHEFHAKCVDK 55 (75)
T ss_dssp TTEEEETTHHHH
T ss_pred CCCHhHHHHHHH
Confidence 344555555443
No 93
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=47.41 E-value=1.5 Score=22.93 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=14.4
Q ss_pred eeecCCCCCCCCCCeeccCC
Q 040725 124 FKCSHGGCSISPSNYVALEG 143 (164)
Q Consensus 124 F~C~~C~~~l~~~~f~~~~g 143 (164)
++|..|++.|....+.++++
T Consensus 10 ~~C~~C~~~i~~~~~~EH~D 29 (39)
T 2i5o_A 10 VPCEKCGSLVPVWDMPEHMD 29 (39)
T ss_dssp EECTTTCCEEEGGGHHHHHH
T ss_pred cccccccCcCCcccccchhh
Confidence 57999999887655555554
No 94
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=44.23 E-value=9.1 Score=16.32 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=9.1
Q ss_pred eeecCCCCCCCC
Q 040725 124 FKCSHGGCSISP 135 (164)
Q Consensus 124 F~C~~C~~~l~~ 135 (164)
|.|..|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 678899887644
No 95
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=42.72 E-value=9.1 Score=16.48 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=9.3
Q ss_pred eeecCCCCCCCC
Q 040725 124 FKCSHGGCSISP 135 (164)
Q Consensus 124 F~C~~C~~~l~~ 135 (164)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 789999887643
No 96
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=42.49 E-value=6 Score=25.32 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=12.6
Q ss_pred CccccccCCceeecccE
Q 040725 9 TQQKYKVYEKTVYPVEQ 25 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~ 25 (164)
+...|..|++.|.-+++
T Consensus 24 ~Ra~Ck~C~~kI~Kgel 40 (106)
T 2dmj_A 24 GRASCKKCSESIPKDSL 40 (106)
T ss_dssp SCCBCSSSCCBCCTTCE
T ss_pred CCCcchhhCCccCCCCE
Confidence 34689999999866654
No 97
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=41.44 E-value=10 Score=16.40 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=9.3
Q ss_pred eeecCCCCCCCC
Q 040725 124 FKCSHGGCSISP 135 (164)
Q Consensus 124 F~C~~C~~~l~~ 135 (164)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 679999887654
No 98
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=40.59 E-value=7.7 Score=22.03 Aligned_cols=24 Identities=17% Similarity=0.475 Sum_probs=18.7
Q ss_pred cCccccccce--------eecCCCCCCCCCCe
Q 040725 115 ESQAYHKTCF--------KCSHGGCSISPSNY 138 (164)
Q Consensus 115 ~~~~~H~~CF--------~C~~C~~~l~~~~f 138 (164)
=|+.||.+|. +|..|...+....+
T Consensus 35 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 35 CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 4778888887 79999998876544
No 99
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=39.32 E-value=11 Score=16.26 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=9.7
Q ss_pred eeecCCCCCCCCC
Q 040725 124 FKCSHGGCSISPS 136 (164)
Q Consensus 124 F~C~~C~~~l~~~ 136 (164)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 7899998876443
No 100
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=39.06 E-value=9.7 Score=20.34 Aligned_cols=21 Identities=24% Similarity=0.533 Sum_probs=15.4
Q ss_pred cCccccccce--------eecCCCCCCCC
Q 040725 115 ESQAYHKTCF--------KCSHGGCSISP 135 (164)
Q Consensus 115 ~~~~~H~~CF--------~C~~C~~~l~~ 135 (164)
=++.||.+|+ +|..|...|.+
T Consensus 27 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 27 CGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp TSCEEETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCcccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3677888875 58888887753
No 101
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=38.96 E-value=9.6 Score=21.00 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=19.7
Q ss_pred ccCccccccce--------eecCCCCCCCCCCee
Q 040725 114 VESQAYHKTCF--------KCSHGGCSISPSNYV 139 (164)
Q Consensus 114 ~~~~~~H~~CF--------~C~~C~~~l~~~~f~ 139 (164)
.=|+.||.+|+ +|..|...+......
T Consensus 27 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 27 ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 60 (64)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEE
T ss_pred CCCCchhHHHHHHHHHcCCCCCCCCccCCcccee
Confidence 34788888887 699999998766543
No 102
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=38.75 E-value=13 Score=15.85 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=9.5
Q ss_pred eeecCCCCCCCCC
Q 040725 124 FKCSHGGCSISPS 136 (164)
Q Consensus 124 F~C~~C~~~l~~~ 136 (164)
|.|..|++.+...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 5788898876543
No 103
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=38.67 E-value=6.3 Score=25.68 Aligned_cols=17 Identities=6% Similarity=0.087 Sum_probs=13.2
Q ss_pred CccccccCCceeecccE
Q 040725 9 TQQKYKVYEKTVYPVEQ 25 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~ 25 (164)
+...|..|++.|.-+++
T Consensus 19 ~RA~Ck~Ck~kI~KgeL 35 (114)
T 1v9x_A 19 SRSSCKTCKSVINKENF 35 (114)
T ss_dssp SCCBCSSSCCBCCSSSE
T ss_pred CCCCchhhCCccCCCCE
Confidence 45689999999966664
No 104
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=38.52 E-value=11 Score=16.22 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=9.3
Q ss_pred eeecCCCCCCCC
Q 040725 124 FKCSHGGCSISP 135 (164)
Q Consensus 124 F~C~~C~~~l~~ 135 (164)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 789999887643
No 105
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=38.46 E-value=8.2 Score=28.40 Aligned_cols=14 Identities=0% Similarity=0.045 Sum_probs=9.9
Q ss_pred CCccccccCCceee
Q 040725 8 GTQQKYKVYEKTVY 21 (164)
Q Consensus 8 ~~~~~C~~C~~~i~ 21 (164)
+....|..|...|.
T Consensus 178 ~~i~~C~iC~~iv~ 191 (238)
T 3nw0_A 178 DAVKICNICHSLLI 191 (238)
T ss_dssp TTCCBCTTTCSBCS
T ss_pred CCCCcCcchhhHHh
Confidence 34567888888774
No 106
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=38.17 E-value=12 Score=16.30 Aligned_cols=13 Identities=8% Similarity=0.345 Sum_probs=9.7
Q ss_pred eeecCCCCCCCCC
Q 040725 124 FKCSHGGCSISPS 136 (164)
Q Consensus 124 F~C~~C~~~l~~~ 136 (164)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 6799998877543
No 107
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=37.91 E-value=11 Score=16.18 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=8.6
Q ss_pred eeecCCCCCCC
Q 040725 124 FKCSHGGCSIS 134 (164)
Q Consensus 124 F~C~~C~~~l~ 134 (164)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 68999988764
No 108
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=44.06 E-value=6.8 Score=16.75 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=9.7
Q ss_pred eeecCCCCCCCCC
Q 040725 124 FKCSHGGCSISPS 136 (164)
Q Consensus 124 F~C~~C~~~l~~~ 136 (164)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 6789998877543
No 109
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=37.83 E-value=9.3 Score=18.03 Aligned_cols=13 Identities=15% Similarity=0.590 Sum_probs=10.5
Q ss_pred ccceeecCCCCCC
Q 040725 121 KTCFKCSHGGCSI 133 (164)
Q Consensus 121 ~~CF~C~~C~~~l 133 (164)
.+|..|..|...|
T Consensus 5 wsclvcaacsvel 17 (31)
T 2lbz_A 5 WSCLVCAACSVEL 17 (31)
T ss_dssp TGGGGGGGCCSCS
T ss_pred HHHHHHHHhHHHH
Confidence 4688999998876
No 110
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=37.19 E-value=9.5 Score=24.85 Aligned_cols=17 Identities=6% Similarity=-0.107 Sum_probs=13.4
Q ss_pred CccccccCCceeecccE
Q 040725 9 TQQKYKVYEKTVYPVEQ 25 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~ 25 (164)
+...|..|++.|.-+++
T Consensus 14 gRA~Ck~C~~kI~KgeL 30 (117)
T 1uw0_A 14 GTAGCKKCKEKIVKGVC 30 (117)
T ss_dssp SCEECTTSSCEECTTCE
T ss_pred CCccchhhCcccCCCCe
Confidence 45689999999976664
No 111
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=35.92 E-value=53 Score=18.76 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=7.1
Q ss_pred CCeeeecchhhhh
Q 040725 56 EGVLYCKPHFEQL 68 (164)
Q Consensus 56 ~g~~~C~~c~~~~ 68 (164)
=+..||..|..+.
T Consensus 36 C~H~fc~~Ci~~~ 48 (78)
T 2ect_A 36 CNHLFHDSCIVPW 48 (78)
T ss_dssp TSCEEETTTTHHH
T ss_pred CCCeecHHHHHHH
Confidence 4455666665543
No 112
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.53 E-value=13 Score=16.10 Aligned_cols=11 Identities=36% Similarity=0.733 Sum_probs=8.7
Q ss_pred eeecCCCCCCC
Q 040725 124 FKCSHGGCSIS 134 (164)
Q Consensus 124 F~C~~C~~~l~ 134 (164)
|.|..|++.+.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 78999988764
No 113
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=35.49 E-value=15 Score=15.79 Aligned_cols=12 Identities=8% Similarity=0.304 Sum_probs=9.2
Q ss_pred eeecCCCCCCCC
Q 040725 124 FKCSHGGCSISP 135 (164)
Q Consensus 124 F~C~~C~~~l~~ 135 (164)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 678899887654
No 114
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=35.35 E-value=11 Score=16.31 Aligned_cols=12 Identities=8% Similarity=0.429 Sum_probs=9.2
Q ss_pred eeecCCCCCCCC
Q 040725 124 FKCSHGGCSISP 135 (164)
Q Consensus 124 F~C~~C~~~l~~ 135 (164)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 789999887643
No 115
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=33.32 E-value=6.3 Score=24.96 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=18.6
Q ss_pred ccccceeecCCCCCCCCCCeec
Q 040725 119 YHKTCFKCSHGGCSISPSNYVA 140 (164)
Q Consensus 119 ~H~~CF~C~~C~~~l~~~~f~~ 140 (164)
.-..-|.|..|++++.+.+|+.
T Consensus 66 ~~s~~~~C~nC~R~vaa~RFAp 87 (99)
T 3mhs_C 66 ESSQYIHCENCGRDVSANRLAA 87 (99)
T ss_dssp TTSCEEECTTTCCEEEGGGHHH
T ss_pred cCCCeEECCCCCCCchhhhhHH
Confidence 4456799999999999999987
No 116
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.71 E-value=17 Score=16.62 Aligned_cols=13 Identities=8% Similarity=0.090 Sum_probs=9.9
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 2elx_A 7 GYVCALCLKKFVS 19 (35)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCcchhCC
Confidence 3889999887643
No 117
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=31.62 E-value=17 Score=16.71 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=9.4
Q ss_pred eeecCCCCCCCC
Q 040725 124 FKCSHGGCSISP 135 (164)
Q Consensus 124 F~C~~C~~~l~~ 135 (164)
|.|..|++.+..
T Consensus 8 ~~C~~C~k~f~~ 19 (35)
T 1srk_A 8 FVCRICLSAFTT 19 (35)
T ss_dssp EECSSSCCEESS
T ss_pred eeCCCCCcccCC
Confidence 789999887643
No 118
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=31.52 E-value=18 Score=16.86 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 3789999987644
No 119
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=37.65 E-value=10 Score=16.60 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=9.7
Q ss_pred eeecCCCCCCCCC
Q 040725 124 FKCSHGGCSISPS 136 (164)
Q Consensus 124 F~C~~C~~~l~~~ 136 (164)
|.|..|++.+...
T Consensus 4 ~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 4 YVCIHCQRQFADP 16 (30)
Confidence 6889998877543
No 120
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.90 E-value=23 Score=20.25 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=17.4
Q ss_pred cCccccccceeecCCCCC-CCCCCeec
Q 040725 115 ESQAYHKTCFKCSHGGCS-ISPSNYVA 140 (164)
Q Consensus 115 ~~~~~H~~CF~C~~C~~~-l~~~~f~~ 140 (164)
....+|. ..|..|++. |.+.+|.-
T Consensus 5 ~~~v~H~--~~Cd~C~~~pi~G~RykC 29 (63)
T 2e5r_A 5 SSGVFHP--VECSYCHSESMMGFRYRC 29 (63)
T ss_dssp SSSCCSC--SCCSSSCCCSSCSCEEEE
T ss_pred cCCceeC--CCCcCCCCcceecceEEe
Confidence 3467787 889999975 87766654
No 121
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.72 E-value=19 Score=16.61 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 3789999987754
No 122
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=30.57 E-value=19 Score=16.51 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=9.1
Q ss_pred eeecCCCCCCCC
Q 040725 124 FKCSHGGCSISP 135 (164)
Q Consensus 124 F~C~~C~~~l~~ 135 (164)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~F~~ 14 (33)
T 1rim_A 3 FACPECPKRFMR 14 (33)
T ss_dssp CCCSSSCCCCSS
T ss_pred ccCCCCCchhCC
Confidence 678999887643
No 123
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=35.75 E-value=11 Score=16.39 Aligned_cols=13 Identities=15% Similarity=0.416 Sum_probs=9.5
Q ss_pred eeecCCCCCCCCC
Q 040725 124 FKCSHGGCSISPS 136 (164)
Q Consensus 124 F~C~~C~~~l~~~ 136 (164)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 6788998876443
No 124
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.58 E-value=42 Score=19.36 Aligned_cols=26 Identities=23% Similarity=0.763 Sum_probs=15.1
Q ss_pred ccCCCCCcCcCCCeeeeCCeeeecch
Q 040725 39 KCSHCKGTLKLSNYSSMEGVLYCKPH 64 (164)
Q Consensus 39 ~C~~C~~~L~~~~~~~~~g~~~C~~c 64 (164)
+|..|++.+.-..|.-+=|..||..|
T Consensus 17 rC~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wfh_A 17 RCTVCRKRVGLTGFMCRCGTTFCGSH 42 (64)
T ss_dssp CCTTTCCCCCTTCEECSSSCEECTTT
T ss_pred cChhhCCccCccCEEeecCCEecccc
Confidence 45566665544444445666777666
No 125
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.61 E-value=21 Score=16.61 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=10.2
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
-|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 4899999987654
No 126
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.51 E-value=20 Score=16.56 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=9.9
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elq_A 9 PFKCSLCEYATRS 21 (36)
T ss_dssp SEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 3789999887643
No 127
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=27.97 E-value=18 Score=17.95 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=10.4
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 8 p~~C~~CgK~F~~ 20 (36)
T 1fv5_A 8 RFMCLPCGIAFSS 20 (36)
T ss_dssp CCEETTTTEECSC
T ss_pred CeECCCCCCccCC
Confidence 4889999998754
No 128
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.56 E-value=22 Score=16.45 Aligned_cols=13 Identities=8% Similarity=0.220 Sum_probs=9.7
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elv_A 9 LYDCHICERKFKN 21 (36)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 3789999887643
No 129
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.44 E-value=22 Score=16.32 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=9.9
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
-|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elt_A 9 PYKCPQCSYASAI 21 (36)
T ss_dssp SEECSSSSCEESS
T ss_pred CCCCCCCCcccCC
Confidence 4889999887643
No 130
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.31 E-value=21 Score=16.49 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=9.8
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2els_A 9 IFTCEYCNKVFKF 21 (36)
T ss_dssp CEECTTTCCEESS
T ss_pred CEECCCCCceeCC
Confidence 3789999887643
No 131
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.16 E-value=47 Score=19.18 Aligned_cols=26 Identities=19% Similarity=0.655 Sum_probs=13.8
Q ss_pred ccCCCCCcCcCCCeeeeCCeeeecch
Q 040725 39 KCSHCKGTLKLSNYSSMEGVLYCKPH 64 (164)
Q Consensus 39 ~C~~C~~~L~~~~~~~~~g~~~C~~c 64 (164)
+|..|++.+.-..|.-+=|..||..|
T Consensus 17 rC~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wg2_A 17 RCFSCNKKVGVMGFKCKCGSTFCGSH 42 (64)
T ss_dssp SCTTTCCCCTTSCEECTTSCEECSSS
T ss_pred cChhhCCcccccCeEeecCCEecccC
Confidence 34555555443344445556667655
No 132
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.07 E-value=18 Score=21.36 Aligned_cols=12 Identities=8% Similarity=0.066 Sum_probs=7.2
Q ss_pred CccccccCCcee
Q 040725 9 TQQKYKVYEKTV 20 (164)
Q Consensus 9 ~~~~C~~C~~~i 20 (164)
....|..|...+
T Consensus 14 ~~~~C~IC~~~~ 25 (81)
T 2ecl_A 14 ECDTCAICRVQV 25 (81)
T ss_dssp CCSCBTTTTBCT
T ss_pred CCCCCcccChhh
Confidence 445566666655
No 133
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.73 E-value=20 Score=16.71 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
-|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elo_A 9 SYSCPVCEKSFSE 21 (37)
T ss_dssp CCEETTTTEECSS
T ss_pred CcCCCCCCCccCC
Confidence 4789999987644
No 134
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.65 E-value=15 Score=20.48 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=15.8
Q ss_pred ccCccccccce--------eecCCCCCCC
Q 040725 114 VESQAYHKTCF--------KCSHGGCSIS 134 (164)
Q Consensus 114 ~~~~~~H~~CF--------~C~~C~~~l~ 134 (164)
.=|+.||.+|+ +|..|...|.
T Consensus 39 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 39 ECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp SSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 34778888887 5888888775
No 135
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=26.64 E-value=29 Score=19.27 Aligned_cols=12 Identities=8% Similarity=0.091 Sum_probs=6.3
Q ss_pred CCeeeecchhhh
Q 040725 56 EGVLYCKPHFEQ 67 (164)
Q Consensus 56 ~g~~~C~~c~~~ 67 (164)
=|..||..|..+
T Consensus 24 C~H~fc~~Ci~~ 35 (68)
T 1chc_A 24 CLHAFCYVCITR 35 (68)
T ss_dssp TTEEESTTHHHH
T ss_pred CCCeeHHHHHHH
Confidence 445556555543
No 136
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=26.46 E-value=60 Score=18.86 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=27.5
Q ss_pred ccccccCCceeecccEEEeCC-----cccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhhh
Q 040725 10 QQKYKVYEKTVYPVEQLSDDG-----VVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQ 67 (164)
Q Consensus 10 ~~~C~~C~~~i~~~~~~~~~~-----~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~ 67 (164)
...| .|++.- .++.|.-++ ..||..|.. |... ..++-||..|..+
T Consensus 16 ~~~C-~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvg-------l~~~----p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 16 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQE 65 (71)
T ss_dssp CCCS-TTCCCS-CSSEECCSCSSCSCCCEETTTTT-------CSSC----CSSCCCCTTTSSC
T ss_pred CCEE-ECCCCC-CCCEeEeeCCCCCCccEecccCC-------cCcC----CCCCEECCCCCcc
Confidence 4567 688865 466666555 568988864 2211 1356788877543
No 137
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.38 E-value=20 Score=16.88 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=9.4
Q ss_pred ceeecCCCCCCC
Q 040725 123 CFKCSHGGCSIS 134 (164)
Q Consensus 123 CF~C~~C~~~l~ 134 (164)
=|.|..|++.+.
T Consensus 9 ~~~C~~C~k~f~ 20 (37)
T 2elm_A 9 LYYCSQCHYSSI 20 (37)
T ss_dssp EEECSSSSCEEE
T ss_pred CeECCCCCcccC
Confidence 388999988764
No 138
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=25.98 E-value=23 Score=16.83 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
-|.|..|++.+..
T Consensus 6 ~~~C~~C~k~f~~ 18 (39)
T 1njq_A 6 SYTCSFCKREFRS 18 (39)
T ss_dssp SEECTTTCCEESS
T ss_pred ceECCCCCcccCC
Confidence 4889999987643
No 139
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=24.82 E-value=16 Score=16.60 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=8.3
Q ss_pred eeecCCCCCCC
Q 040725 124 FKCSHGGCSIS 134 (164)
Q Consensus 124 F~C~~C~~~l~ 134 (164)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (32)
T 2kfq_A 3 FACPACPKRFM 13 (32)
T ss_dssp SSSSSSCTTHH
T ss_pred CCCCCCCcccC
Confidence 67889988653
No 140
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.82 E-value=27 Score=16.74 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=9.9
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 10 ~~~C~~C~k~f~~ 22 (42)
T 2yte_A 10 PYSCAECKETFSD 22 (42)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeECCCCCCccCC
Confidence 3789999987644
No 141
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=24.62 E-value=9.6 Score=24.89 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=11.4
Q ss_pred CccccccCCceeecccE
Q 040725 9 TQQKYKVYEKTVYPVEQ 25 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~ 25 (164)
+...|..|++.|.-+++
T Consensus 37 ~RA~Ck~C~~kI~KgeL 53 (116)
T 3od8_A 37 GRASCKKCSESIPKDSL 53 (116)
T ss_dssp SCCBCTTTCCBCCTTSE
T ss_pred CCccCcccCCccCCCCE
Confidence 34678888888855543
No 142
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.45 E-value=56 Score=19.42 Aligned_cols=28 Identities=18% Similarity=0.580 Sum_probs=17.8
Q ss_pred cccCCCCCcCcCCCeeeeCCeeeecchh
Q 040725 38 FKCSHCKGTLKLSNYSSMEGVLYCKPHF 65 (164)
Q Consensus 38 f~C~~C~~~L~~~~~~~~~g~~~C~~c~ 65 (164)
-+|..|++.+.-..|.-+=+..||..|-
T Consensus 26 ~RC~~C~kkvgL~~f~CrCg~~FCs~HR 53 (74)
T 1wfp_A 26 TRCLSCNKKVGVTGFKCRCGSTFCGTHR 53 (74)
T ss_dssp CBCSSSCCBCTTTCEECTTSCEECTTTC
T ss_pred ccchhhcCcccccceEeccCCEeccccC
Confidence 3456777766555555566777887763
No 143
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=24.26 E-value=34 Score=16.92 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=10.7
Q ss_pred ceeecCCCCCCCCC
Q 040725 123 CFKCSHGGCSISPS 136 (164)
Q Consensus 123 CF~C~~C~~~l~~~ 136 (164)
=|.|..|++.+...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ely_A 12 PFKCVECGKGFSRR 25 (46)
T ss_dssp SBCCSSSCCCBSST
T ss_pred CcccCccCcccCCH
Confidence 37899999887554
No 144
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.77 E-value=30 Score=16.58 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=9.9
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2ytb_A 11 PYRCDQCGKAFSQ 23 (42)
T ss_dssp SBCCTTTTCCBSS
T ss_pred CeeCCCccchhCC
Confidence 3789999987654
No 145
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.70 E-value=28 Score=17.12 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=9.9
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~F~~ 24 (44)
T 2epv_A 12 PYECNECGKAFIW 24 (44)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCCcccCc
Confidence 4889999987643
No 146
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.66 E-value=31 Score=16.60 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=9.8
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2eos_A 11 PYPCEICGTRFRH 23 (42)
T ss_dssp CBCCSSSCCCBSS
T ss_pred CEECCCCCCccCC
Confidence 3789999987644
No 147
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.66 E-value=30 Score=16.90 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=10.5
Q ss_pred ceeecCCCCCCCCC
Q 040725 123 CFKCSHGGCSISPS 136 (164)
Q Consensus 123 CF~C~~C~~~l~~~ 136 (164)
=|.|..|++.+...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (44)
T 2yu5_A 12 PFKCSKCDRVFTQR 25 (44)
T ss_dssp SEECSSSSCEESSS
T ss_pred CeECCCCCchhCCH
Confidence 38899999876543
No 148
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.37 E-value=15 Score=24.59 Aligned_cols=17 Identities=6% Similarity=-0.052 Sum_probs=13.0
Q ss_pred CccccccCCceeecccE
Q 040725 9 TQQKYKVYEKTVYPVEQ 25 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~ 25 (164)
+...|..|++.|.-+++
T Consensus 26 gRA~CK~C~~kI~KgeL 42 (134)
T 2cs2_A 26 NRSTCKGCMEKIEKGQV 42 (134)
T ss_dssp SCCBCSSSCCBCCTTSE
T ss_pred CCccchhcCCcccCCCe
Confidence 45689999999966664
No 149
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=23.36 E-value=28 Score=16.66 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2epc_A 11 PYLCGQCGKSFTQ 23 (42)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCcccCC
Confidence 3889999987643
No 150
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=23.23 E-value=33 Score=19.94 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=11.4
Q ss_pred eCCeeeecchhhhh
Q 040725 55 MEGVLYCKPHFEQL 68 (164)
Q Consensus 55 ~~g~~~C~~c~~~~ 68 (164)
=++.+||..||.+.
T Consensus 25 CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 25 CDGDLYCARCFREG 38 (67)
T ss_dssp TTSEEECSSHHHHH
T ss_pred CCCceehHHHHHHH
Confidence 36789999999775
No 151
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.22 E-value=28 Score=16.91 Aligned_cols=12 Identities=17% Similarity=0.565 Sum_probs=9.6
Q ss_pred eeecCCCCCCCC
Q 040725 124 FKCSHGGCSISP 135 (164)
Q Consensus 124 F~C~~C~~~l~~ 135 (164)
|.|..|++.+..
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2en7_A 13 YVCNECGKAFRS 24 (44)
T ss_dssp SCCTTTCCCCSS
T ss_pred eECCCCCCccCC
Confidence 789999987654
No 152
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=23.17 E-value=29 Score=16.68 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
-|.|..|++.+..
T Consensus 10 ~~~C~~C~k~f~~ 22 (42)
T 2el5_A 10 PYECSECGKAFNR 22 (42)
T ss_dssp SEECSSSCCEESS
T ss_pred CccCCCcChhhCC
Confidence 4899999887643
No 153
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.00 E-value=28 Score=16.73 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2en2_A 11 PYKCETCGARFVQ 23 (42)
T ss_dssp SEECTTTCCEESS
T ss_pred CEeCCCcChhhCC
Confidence 4889999987643
No 154
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.91 E-value=31 Score=17.04 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=10.2
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
-|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2emg_A 12 PFICSECGKVFTH 24 (46)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CEECCccCcccCC
Confidence 4889999987654
No 155
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=22.85 E-value=54 Score=20.07 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=18.4
Q ss_pred ceeecCCCCCCCCC-CeeccCC---Chhhhccccc
Q 040725 123 CFKCSHGGCSISPS-NYVALEG---NYNHLIKFAS 153 (164)
Q Consensus 123 CF~C~~C~~~l~~~-~f~~~~g---~y~~l~~~~~ 153 (164)
=|.|. |+..+-+. +|.+..+ +|+.+-...-
T Consensus 40 ~f~Cr-Cg~~FC~~HRy~e~H~C~fDyK~~gr~~i 73 (85)
T 1wff_A 40 SFECR-CGNNFCASHRYAEAHGCNYDYKSAGRRYL 73 (85)
T ss_dssp CEECT-TCCEECTTTCSTGGGTCCSCCSSSCCCCC
T ss_pred CeEcC-CCCEecccCCCccCCCCcchhhHHHHHHH
Confidence 37884 88887544 4555555 7776544433
No 156
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=22.81 E-value=52 Score=19.58 Aligned_cols=26 Identities=27% Similarity=0.750 Sum_probs=16.0
Q ss_pred ccCCCCCcCcCCCeeeeCCeeeecch
Q 040725 39 KCSHCKGTLKLSNYSSMEGVLYCKPH 64 (164)
Q Consensus 39 ~C~~C~~~L~~~~~~~~~g~~~C~~c 64 (164)
+|..|++.+.-..|.-+=+..||..|
T Consensus 27 RC~~CrKkvgL~gf~CrCg~~FCs~H 52 (74)
T 1wfl_A 27 RCFMCRKKVGLTGFDCRCGNLFCGLH 52 (74)
T ss_dssp BCSSSCCBCGGGCEECTTSCEECSSS
T ss_pred cChhhCCcccccCeecCCCCEechhc
Confidence 45567676554455545667777666
No 157
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=22.77 E-value=25 Score=18.67 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=13.7
Q ss_pred eeeCCeeeecchhhhhc
Q 040725 53 SSMEGVLYCKPHFEQLF 69 (164)
Q Consensus 53 ~~~~g~~~C~~c~~~~~ 69 (164)
...+-++||..|+.++-
T Consensus 23 mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 23 MSVNTQPLCHECSERRQ 39 (49)
T ss_dssp CCTTTTTSCHHHHHHHH
T ss_pred EEecCccchHHHHHHHh
Confidence 35788999999998753
No 158
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.70 E-value=33 Score=16.96 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=10.8
Q ss_pred ceeecCCCCCCCCC
Q 040725 123 CFKCSHGGCSISPS 136 (164)
Q Consensus 123 CF~C~~C~~~l~~~ 136 (164)
-|.|..|++.+...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2enh_A 12 PYECDVCRKAFSHH 25 (46)
T ss_dssp SCBCTTTCCBCSSS
T ss_pred CcCCCCcCchhCCH
Confidence 48899999887543
No 159
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.60 E-value=33 Score=16.93 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2enf_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 3789999987644
No 160
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.45 E-value=32 Score=16.98 Aligned_cols=13 Identities=31% Similarity=0.518 Sum_probs=10.2
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2en3_A 12 PFQCKECGMNFSW 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeeCcccChhhCC
Confidence 3889999987654
No 161
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.40 E-value=33 Score=16.99 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eon_A 12 PYKCQVCGKAFRV 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred ccCCCCCCcccCc
Confidence 3789999987654
No 162
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=22.04 E-value=30 Score=17.64 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=9.0
Q ss_pred eeecCCCCCCC
Q 040725 124 FKCSHGGCSIS 134 (164)
Q Consensus 124 F~C~~C~~~l~ 134 (164)
|.|..|++.+.
T Consensus 8 ~~C~~C~k~F~ 18 (48)
T 3iuf_A 8 YACDICGKRYK 18 (48)
T ss_dssp EECTTTCCEES
T ss_pred EECCCcCcccC
Confidence 78999988764
No 163
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.98 E-value=34 Score=16.89 Aligned_cols=13 Identities=38% Similarity=0.892 Sum_probs=10.2
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
-|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em6_A 12 CYKCDVCGKEFSQ 24 (46)
T ss_dssp CCBCSSSCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 4889999988754
No 164
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.96 E-value=33 Score=16.96 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eoy_A 12 CFKCNKCEKTFSC 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CEECcCCCCcCCC
Confidence 3889999987654
No 165
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.80 E-value=31 Score=16.94 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yts_A 12 PYICNECGKSFIQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CEECCCCChhhCC
Confidence 4899999987643
No 166
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.75 E-value=30 Score=16.76 Aligned_cols=13 Identities=8% Similarity=0.342 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2eof_A 12 PYECNECQKAFNT 24 (44)
T ss_dssp SEECTTTCCEESC
T ss_pred CeECCCCCcccCC
Confidence 4899999987643
No 167
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.75 E-value=30 Score=16.86 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2emb_A 12 RYECSKCQATFNL 24 (44)
T ss_dssp SEECTTTCCEESC
T ss_pred CeECCCCCCccCC
Confidence 4889999987643
No 168
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.62 E-value=32 Score=16.92 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytf_A 12 PFECSECQKAFNT 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CcCCCCCCcccCC
Confidence 4899999987643
No 169
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.61 E-value=32 Score=16.96 Aligned_cols=13 Identities=8% Similarity=0.304 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2em3_A 12 PYECKVCSKAFTQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCCcccCC
Confidence 4899999987643
No 170
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.56 E-value=32 Score=16.96 Aligned_cols=13 Identities=15% Similarity=0.575 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ep3_A 12 PYRCAECGKAFTD 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCCchhCC
Confidence 4899999987644
No 171
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.54 E-value=32 Score=16.40 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=9.9
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 10 ~~~C~~C~k~f~~ 22 (41)
T 2ept_A 10 VYECQECGKSFRQ 22 (41)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCCcCC
Confidence 4889999887643
No 172
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.41 E-value=32 Score=16.97 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eq2_A 12 PYQCNECGKAFSQ 24 (46)
T ss_dssp SSSCCSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 3789999987644
No 173
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.36 E-value=33 Score=16.93 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emi_A 12 HYECSECGKAFIQ 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CCCCCCCCcccCC
Confidence 4899999987643
No 174
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.31 E-value=35 Score=16.78 Aligned_cols=14 Identities=21% Similarity=0.282 Sum_probs=10.4
Q ss_pred ceeecCCCCCCCCC
Q 040725 123 CFKCSHGGCSISPS 136 (164)
Q Consensus 123 CF~C~~C~~~l~~~ 136 (164)
=|.|..|++.+...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2epw_A 12 PCKCTECGKAFCWK 25 (46)
T ss_dssp SEECSSSCCEESSS
T ss_pred CeeCCCCCCccCCH
Confidence 38899999876543
No 175
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.30 E-value=35 Score=16.86 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2en9_A 12 LFKCNECKKTFTQ 24 (46)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CEECCccCcccCC
Confidence 4789999987754
No 176
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.23 E-value=35 Score=16.81 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=10.6
Q ss_pred ceeecCCCCCCCCC
Q 040725 123 CFKCSHGGCSISPS 136 (164)
Q Consensus 123 CF~C~~C~~~l~~~ 136 (164)
=|.|..|++.+...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2yu8_A 12 PYKCNECGKVFTQN 25 (46)
T ss_dssp SEECSSSCCEESSS
T ss_pred CeECCcCCchhCCH
Confidence 38999999876543
No 177
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.19 E-value=32 Score=16.89 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eow_A 12 PYKCNECGKAFRA 24 (46)
T ss_dssp CEECTTSCCEESS
T ss_pred CeeccccCChhcC
Confidence 3889999987643
No 178
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.18 E-value=37 Score=16.75 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yth_A 12 PFQCEECGKRFTQ 24 (46)
T ss_dssp SBCCSSSCCCBSS
T ss_pred CCCCCCCCcccCC
Confidence 4789999987644
No 179
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.05 E-value=29 Score=16.92 Aligned_cols=14 Identities=14% Similarity=0.513 Sum_probs=10.6
Q ss_pred ceeecCCCCCCCCC
Q 040725 123 CFKCSHGGCSISPS 136 (164)
Q Consensus 123 CF~C~~C~~~l~~~ 136 (164)
=|.|..|++.+...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (44)
T 2eox_A 12 SYNCNECGKAFTRI 25 (44)
T ss_dssp CEEETTTTEEESSS
T ss_pred CeECcccCcccCCH
Confidence 48999999876543
No 180
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.04 E-value=33 Score=16.93 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2eoo_A 12 PYGCNECGKNFGR 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CEEccccCcccCC
Confidence 4899999987644
No 181
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.02 E-value=34 Score=16.80 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ep1_A 12 PYECSDCGKSFIK 24 (46)
T ss_dssp SSCCSSSCCCCSS
T ss_pred CcCCCCCCchhCC
Confidence 4789999987644
No 182
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.02 E-value=36 Score=16.81 Aligned_cols=13 Identities=8% Similarity=0.256 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eoh_A 12 PYECKECRKTFIQ 24 (46)
T ss_dssp SCCCSSSCCCCSS
T ss_pred CcCCCCcCchhCC
Confidence 4789999987644
No 183
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.00 E-value=37 Score=16.66 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eov_A 12 PYKCSDCGKSFTW 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred CccCCccChhhCC
Confidence 3889999987754
No 184
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.93 E-value=29 Score=16.87 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2eoj_A 12 PYECCECGKVFSR 24 (44)
T ss_dssp SCEETTTTEECSS
T ss_pred CeeCCCCCCccCC
Confidence 4889999987644
No 185
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.89 E-value=35 Score=16.82 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=9.9
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eq1_A 12 PYKCNECGKAFRA 24 (46)
T ss_dssp CCCCTTTTCCCSS
T ss_pred CeECCcCChhhCC
Confidence 3789999987644
No 186
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.81 E-value=38 Score=16.47 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 10 ~~~C~~C~k~f~~ 22 (43)
T 2yrm_A 10 AFFCNECDCRFSE 22 (43)
T ss_dssp CBCCSSSCCCBSS
T ss_pred CEECCCCCCeeCC
Confidence 3789999987644
No 187
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.79 E-value=38 Score=17.62 Aligned_cols=13 Identities=23% Similarity=0.076 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 41 ~~~C~~C~k~F~~ 53 (54)
T 2eps_A 41 PHKCQVWVSGPSS 53 (54)
T ss_dssp CCCSSSSCCSSCC
T ss_pred CccCCCCCCCCCC
Confidence 3789999987753
No 188
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.74 E-value=35 Score=16.60 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 10 ~~~C~~C~k~f~~ 22 (44)
T 2emx_A 10 PFGCSCCEKAFSS 22 (44)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCCCcccCC
Confidence 3889999987644
No 189
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=20.73 E-value=35 Score=16.86 Aligned_cols=13 Identities=38% Similarity=0.583 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emj_A 12 PFECAECGKSFSI 24 (46)
T ss_dssp SEECSSSSCEESS
T ss_pred CEECCCCCcccCC
Confidence 4889999987643
No 190
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.70 E-value=34 Score=16.79 Aligned_cols=13 Identities=15% Similarity=0.560 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yrj_A 12 PYRCGECGKAFAQ 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 4889999987643
No 191
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=20.68 E-value=37 Score=16.73 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emk_A 12 PYECKECGKAFSQ 24 (46)
T ss_dssp SCBCSSSCCBCSC
T ss_pred ceECCCCCchhCC
Confidence 3789999988754
No 192
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.64 E-value=34 Score=16.83 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eml_A 12 PYECSVCGKAFSH 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeeCCCcCCccCC
Confidence 3889999987643
No 193
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.64 E-value=34 Score=16.87 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
-|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em4_A 12 PYECIECGKAFKT 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CcCCCCCCCccCC
Confidence 4889999987644
No 194
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.45 E-value=35 Score=16.85 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2ytp_A 12 HYECSECGKAFAR 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCcCCcccCC
Confidence 4889999987643
No 195
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=20.39 E-value=21 Score=25.97 Aligned_cols=17 Identities=6% Similarity=-0.052 Sum_probs=0.0
Q ss_pred CccccccCCceeecccE
Q 040725 9 TQQKYKVYEKTVYPVEQ 25 (164)
Q Consensus 9 ~~~~C~~C~~~i~~~~~ 25 (164)
+...|..|++.|.-+++
T Consensus 142 ~Ra~Ck~C~~kI~KgeL 158 (223)
T 4av1_A 142 NRSTCKGCMEKIEKGQV 158 (223)
T ss_dssp -----------------
T ss_pred CCccccccCCccCCCCe
Confidence 45689999999965554
No 196
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.33 E-value=34 Score=16.80 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eor_A 12 PYNCEECGKAFIH 24 (46)
T ss_dssp SEECTTTCCEESS
T ss_pred CccCCCCCCCcCC
Confidence 4889999987643
No 197
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.27 E-value=38 Score=16.75 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=10.2
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
-|.|..|++.+..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2eom_A 12 GHRCSDCGKFFLQ 24 (46)
T ss_dssp SCCCSSSCCCCSS
T ss_pred CcCCCCCCCeeCC
Confidence 4889999987644
No 198
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.20 E-value=71 Score=19.66 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=24.6
Q ss_pred cccccCCceeecccEEEeCC-----cccCCCCcccCCCCCcCcCCCeeeeCCeeeecchhh
Q 040725 11 QKYKVYEKTVYPVEQLSDDG-----VVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFE 66 (164)
Q Consensus 11 ~~C~~C~~~i~~~~~~~~~~-----~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~ 66 (164)
..| .|++.- .+++|.-++ ..||..|.. |... ..++.||..|..
T Consensus 37 ~yC-iC~~~~-~g~MI~CD~~dC~~~WfH~~CVg-------l~~~----p~g~W~Cp~C~~ 84 (91)
T 1weu_A 37 TYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQ 84 (91)
T ss_dssp BCS-TTCCBC-CSCCCCCSCSSCSCCCCCSTTTT-------CSSC----CCSSCCCTTTCC
T ss_pred cEE-ECCCCC-CCCEeEecCCCCCCCCEecccCC-------cCcC----CCCCEECcCccC
Confidence 456 787765 355555554 457877764 2211 135677877744
No 199
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.17 E-value=38 Score=16.61 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eop_A 12 PHECRECGKSFSF 24 (46)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeeCCCCCchhCC
Confidence 3889999987744
No 200
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.13 E-value=36 Score=16.80 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yto_A 12 PYKCSDCGKAFTR 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CEECcccCCccCC
Confidence 4899999987643
No 201
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=20.11 E-value=36 Score=16.77 Aligned_cols=13 Identities=38% Similarity=0.470 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2el6_A 12 PYKCSQCEKSFSG 24 (46)
T ss_dssp SEECSSSSCEESS
T ss_pred CeECCCCCcccCC
Confidence 3899999987644
No 202
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.02 E-value=34 Score=16.83 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2yti_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp TTCCSSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 3789999987644
No 203
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.01 E-value=36 Score=16.76 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=10.0
Q ss_pred ceeecCCCCCCCC
Q 040725 123 CFKCSHGGCSISP 135 (164)
Q Consensus 123 CF~C~~C~~~l~~ 135 (164)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em7_A 12 PYKCEECGKGFIC 24 (46)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCccchhCC
Confidence 4899999987643
Done!