Query 040726
Match_columns 375
No_of_seqs 290 out of 1489
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 18:01:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 6E-33 2E-37 230.3 10.3 105 31-136 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 1.1E-32 3.7E-37 237.9 11.5 111 34-145 2-112 (131)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 7.2E-33 2.5E-37 237.8 9.1 119 17-136 3-128 (128)
4 1h89_C C-MYB, MYB proto-oncoge 100.0 6.5E-34 2.2E-38 252.6 2.1 141 31-180 3-144 (159)
5 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.1E-32 3.6E-37 230.2 7.9 104 34-138 1-104 (107)
6 3osg_A MYB21; transcription-DN 100.0 4.9E-32 1.7E-36 232.5 9.9 107 27-135 4-110 (126)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 2.5E-30 8.6E-35 229.5 9.1 118 18-136 35-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 2.8E-25 9.5E-30 190.6 1.2 112 60-180 1-113 (128)
9 2dim_A Cell division cycle 5-l 99.8 1.1E-21 3.7E-26 151.8 3.7 67 28-95 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 5E-18 1.7E-22 158.7 6.1 105 30-135 4-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 1.2E-17 4.2E-22 130.5 4.3 58 74-132 10-67 (73)
12 2dim_A Cell division cycle 5-l 99.7 2.2E-17 7.7E-22 127.5 5.4 65 82-146 4-69 (70)
13 2juh_A Telomere binding protei 99.7 2.1E-17 7.1E-22 140.7 4.5 83 28-111 11-103 (121)
14 2din_A Cell division cycle 5-l 99.7 6.3E-17 2.1E-21 123.6 6.0 60 80-140 2-61 (66)
15 2d9a_A B-MYB, MYB-related prot 99.7 4.2E-17 1.4E-21 122.2 4.2 57 29-86 3-59 (60)
16 2roh_A RTBP1, telomere binding 99.7 3.4E-17 1.2E-21 139.6 4.1 79 29-108 26-114 (122)
17 2cu7_A KIAA1915 protein; nucle 99.7 1.1E-16 3.6E-21 124.5 6.0 64 81-145 3-66 (72)
18 3osg_A MYB21; transcription-DN 99.6 2.8E-17 9.5E-22 140.6 2.8 91 82-180 6-96 (126)
19 1gv2_A C-MYB, MYB proto-oncoge 99.6 1.6E-17 5.5E-22 137.3 1.3 89 84-180 1-90 (105)
20 1gvd_A MYB proto-oncogene prot 99.6 5.7E-17 1.9E-21 118.1 3.9 52 32-84 1-52 (52)
21 1guu_A C-MYB, MYB proto-oncoge 99.6 8.2E-17 2.8E-21 117.2 2.8 52 32-84 1-52 (52)
22 2k9n_A MYB24; R2R3 domain, DNA 99.6 3.9E-17 1.3E-21 135.9 0.9 86 87-180 1-87 (107)
23 2d9a_A B-MYB, MYB-related prot 99.6 2E-16 7E-21 118.4 4.4 55 82-136 3-58 (60)
24 1ity_A TRF1; helix-turn-helix, 99.6 1.3E-16 4.5E-21 122.9 3.2 62 29-91 5-68 (69)
25 3zqc_A MYB3; transcription-DNA 99.6 1.1E-16 3.9E-21 137.6 2.7 86 87-180 2-88 (131)
26 1guu_A C-MYB, MYB proto-oncoge 99.6 7.3E-16 2.5E-20 112.1 5.2 50 85-134 1-51 (52)
27 1gvd_A MYB proto-oncogene prot 99.6 1.1E-15 3.6E-20 111.3 5.7 50 85-134 1-51 (52)
28 1ity_A TRF1; helix-turn-helix, 99.6 1.6E-15 5.4E-20 116.8 5.8 61 80-140 3-66 (69)
29 3sjm_A Telomeric repeat-bindin 99.6 3.9E-16 1.3E-20 119.0 2.3 54 32-86 9-64 (64)
30 1x41_A Transcriptional adaptor 99.6 1.3E-15 4.5E-20 114.3 3.3 54 30-84 4-57 (60)
31 1x41_A Transcriptional adaptor 99.5 4.9E-15 1.7E-19 111.2 4.9 53 82-134 3-56 (60)
32 1w0t_A Telomeric repeat bindin 99.5 7E-15 2.4E-19 107.5 5.2 49 86-134 1-52 (53)
33 1w0t_A Telomeric repeat bindin 99.5 2.6E-15 9E-20 109.8 2.5 49 33-82 1-51 (53)
34 2yum_A ZZZ3 protein, zinc fing 99.5 9.8E-15 3.4E-19 114.0 5.2 58 82-139 3-66 (75)
35 3sjm_A Telomeric repeat-bindin 99.5 1.2E-14 4.2E-19 110.7 4.8 52 85-136 9-63 (64)
36 2yum_A ZZZ3 protein, zinc fing 99.5 3.5E-15 1.2E-19 116.5 1.3 62 28-90 2-68 (75)
37 2elk_A SPCC24B10.08C protein; 99.5 8.4E-15 2.9E-19 109.3 3.0 50 31-81 6-56 (58)
38 2din_A Cell division cycle 5-l 99.5 2.2E-15 7.7E-20 114.9 -0.6 58 28-88 3-60 (66)
39 2elk_A SPCC24B10.08C protein; 99.5 4.3E-14 1.5E-18 105.4 5.4 50 83-132 5-56 (58)
40 2ltp_A Nuclear receptor corepr 99.2 1.1E-14 3.7E-19 117.8 0.0 57 79-135 8-64 (89)
41 2cu7_A KIAA1915 protein; nucle 99.4 1.6E-14 5.3E-19 112.2 0.8 58 28-87 3-60 (72)
42 2aje_A Telomere repeat-binding 99.4 3.9E-13 1.3E-17 111.9 5.4 77 29-106 8-94 (105)
43 2llk_A Cyclin-D-binding MYB-li 99.3 3.1E-13 1.1E-17 105.5 3.4 57 26-86 15-71 (73)
44 2yus_A SWI/SNF-related matrix- 99.3 4E-13 1.4E-17 106.4 3.7 57 22-80 6-62 (79)
45 2ckx_A NGTRF1, telomere bindin 99.3 6.3E-13 2.1E-17 106.2 4.5 69 35-104 1-79 (83)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.2E-12 4.2E-17 102.1 5.3 51 83-133 14-68 (73)
47 2yus_A SWI/SNF-related matrix- 99.3 1.9E-12 6.5E-17 102.5 3.6 48 84-131 15-62 (79)
48 1ign_A Protein (RAP1); RAP1,ye 99.2 5.3E-12 1.8E-16 118.2 5.2 78 83-172 4-87 (246)
49 2cqr_A RSGI RUH-043, DNAJ homo 99.2 3.1E-12 1.1E-16 99.9 2.5 55 27-82 11-68 (73)
50 2ltp_A Nuclear receptor corepr 98.8 1.3E-12 4.3E-17 105.6 0.0 53 29-83 11-63 (89)
51 2aje_A Telomere repeat-binding 99.2 2E-11 6.7E-16 101.6 6.4 54 82-135 8-66 (105)
52 1x58_A Hypothetical protein 49 99.2 2.1E-11 7E-16 91.9 5.7 49 86-134 7-58 (62)
53 2ckx_A NGTRF1, telomere bindin 99.2 2E-11 7E-16 97.5 5.5 48 88-135 1-53 (83)
54 2roh_A RTBP1, telomere binding 99.2 1.4E-11 4.7E-16 105.0 4.5 54 82-135 26-84 (122)
55 2juh_A Telomere binding protei 99.2 1.2E-11 4.2E-16 105.1 4.1 87 81-169 11-102 (121)
56 2cjj_A Radialis; plant develop 99.1 6.9E-11 2.4E-15 96.3 5.4 50 86-135 7-60 (93)
57 3hm5_A DNA methyltransferase 1 98.9 1.1E-09 3.9E-14 88.9 5.9 68 69-140 16-88 (93)
58 2cjj_A Radialis; plant develop 98.9 2.2E-10 7.4E-15 93.4 1.2 47 34-81 8-57 (93)
59 2eqr_A N-COR1, N-COR, nuclear 98.9 1.7E-09 5.8E-14 81.2 5.7 47 86-132 11-57 (61)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.8 4.2E-09 1.4E-13 81.8 4.4 51 84-135 5-59 (72)
61 1x58_A Hypothetical protein 49 98.7 5.3E-09 1.8E-13 78.8 2.8 48 33-82 7-57 (62)
62 2iw5_B Protein corest, REST co 98.6 2.8E-08 9.6E-13 92.3 5.5 49 86-134 132-180 (235)
63 2eqr_A N-COR1, N-COR, nuclear 98.6 1.9E-08 6.6E-13 75.4 3.6 48 32-81 10-57 (61)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.5 2.7E-08 9.1E-13 77.3 1.5 48 33-82 7-57 (72)
65 2xag_B REST corepressor 1; ami 98.4 1E-07 3.5E-12 97.5 4.2 46 88-133 381-426 (482)
66 1wgx_A KIAA1903 protein; MYB D 98.4 3.7E-07 1.3E-11 71.0 5.0 48 87-134 8-59 (73)
67 1fex_A TRF2-interacting telome 98.3 3.5E-07 1.2E-11 68.3 4.3 47 87-133 2-58 (59)
68 1fex_A TRF2-interacting telome 98.3 1.5E-07 5.1E-12 70.3 1.7 48 34-82 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.3 1.8E-07 6.2E-12 72.8 1.9 48 35-83 9-59 (73)
70 2iw5_B Protein corest, REST co 98.2 6.6E-07 2.3E-11 83.2 3.2 49 32-82 131-179 (235)
71 2yqk_A Arginine-glutamic acid 98.0 6.9E-06 2.4E-10 61.9 5.9 50 82-131 4-54 (63)
72 4eef_G F-HB80.4, designed hema 97.9 2.9E-06 9.8E-11 65.8 1.9 43 87-129 20-66 (74)
73 4iej_A DNA methyltransferase 1 97.9 1.8E-05 6.2E-10 64.1 5.9 61 75-139 22-87 (93)
74 1ug2_A 2610100B20RIK gene prod 97.9 9.3E-06 3.2E-10 65.3 4.1 46 88-133 34-82 (95)
75 4eef_G F-HB80.4, designed hema 97.8 3.5E-06 1.2E-10 65.4 1.1 43 35-78 21-66 (74)
76 1ofc_X ISWI protein; nuclear p 97.8 3.2E-05 1.1E-09 75.0 7.5 99 35-134 111-275 (304)
77 2lr8_A CAsp8-associated protei 96.9 3.7E-06 1.3E-10 64.1 0.0 44 89-133 16-62 (70)
78 4a69_C Nuclear receptor corepr 97.5 8.5E-05 2.9E-09 60.3 5.1 45 87-131 43-87 (94)
79 2yqk_A Arginine-glutamic acid 97.5 6.2E-05 2.1E-09 56.6 3.5 49 29-79 4-53 (63)
80 2crg_A Metastasis associated p 97.5 0.00014 4.7E-09 55.9 5.3 44 87-130 8-52 (70)
81 3hm5_A DNA methyltransferase 1 97.3 9.8E-05 3.3E-09 59.9 2.2 49 32-81 28-80 (93)
82 2xag_B REST corepressor 1; ami 97.2 0.00013 4.4E-09 74.8 3.1 47 32-80 378-424 (482)
83 3iot_A Maltose-binding protein 97.0 0.0001 3.6E-09 73.2 0.1 17 88-104 125-141 (449)
84 2ebi_A DNA binding protein GT- 96.9 0.00059 2E-08 53.8 3.3 49 86-134 3-65 (86)
85 3iot_A Maltose-binding protein 96.8 0.00026 8.9E-09 70.3 1.1 25 29-53 119-143 (449)
86 4a69_C Nuclear receptor corepr 96.8 0.00052 1.8E-08 55.6 2.3 44 34-79 43-86 (94)
87 2crg_A Metastasis associated p 96.7 0.00077 2.7E-08 51.6 2.5 45 33-79 7-52 (70)
88 2ebi_A DNA binding protein GT- 96.6 0.00022 7.6E-09 56.3 -0.9 49 33-81 3-63 (86)
89 2y9y_A Imitation switch protei 96.3 0.0072 2.5E-07 60.1 7.6 100 35-134 124-291 (374)
90 4b4c_A Chromodomain-helicase-D 95.8 0.006 2E-07 55.3 4.1 45 89-133 136-195 (211)
91 2lr8_A CAsp8-associated protei 94.8 0.0015 5.1E-08 49.9 0.0 46 35-82 15-62 (70)
92 1ug2_A 2610100B20RIK gene prod 95.5 0.0059 2E-07 49.1 2.4 44 35-79 34-79 (95)
93 4iej_A DNA methyltransferase 1 94.7 0.013 4.4E-07 47.4 2.2 49 32-81 28-80 (93)
94 1irz_A ARR10-B; helix-turn-hel 93.9 0.085 2.9E-06 39.7 5.0 48 85-132 5-57 (64)
95 4b4c_A Chromodomain-helicase-D 92.5 0.093 3.2E-06 47.3 4.1 36 27-62 127-162 (211)
96 1ofc_X ISWI protein; nuclear p 90.2 0.4 1.4E-05 46.4 6.1 46 87-132 110-156 (304)
97 2xb0_X Chromo domain-containin 89.2 0.18 6.1E-06 48.1 2.7 28 35-62 169-196 (270)
98 1irz_A ARR10-B; helix-turn-hel 80.3 1 3.6E-05 33.8 2.7 47 32-79 5-55 (64)
99 2y9y_A Imitation switch protei 69.2 1.5 5.1E-05 43.5 1.3 32 33-64 227-261 (374)
100 2xb0_X Chromo domain-containin 68.8 6.9 0.00024 37.1 5.8 48 87-134 3-55 (270)
101 2rq5_A Protein jumonji; develo 54.6 3.3 0.00011 34.6 0.6 58 44-104 46-114 (121)
102 2li6_A SWI/SNF chromatin-remod 49.7 7.6 0.00026 31.8 2.1 38 97-134 53-98 (116)
103 2lm1_A Lysine-specific demethy 48.1 17 0.00058 29.0 4.0 38 97-134 48-97 (107)
104 2jrz_A Histone demethylase jar 48.0 16 0.00053 30.0 3.7 38 97-134 44-93 (117)
105 3cz6_A DNA-binding protein RAP 47.6 15 0.0005 32.4 3.7 24 30-53 110-141 (168)
106 2li6_A SWI/SNF chromatin-remod 46.0 4.8 0.00017 33.0 0.3 39 44-83 53-98 (116)
107 1kkx_A Transcription regulator 44.8 10 0.00036 31.5 2.2 39 97-135 52-98 (123)
108 2cxy_A BAF250B subunit, HBAF25 43.7 20 0.00068 29.7 3.8 38 97-134 55-104 (125)
109 2eqy_A RBP2 like, jumonji, at 42.5 21 0.00072 29.4 3.7 38 97-134 46-95 (122)
110 2o8x_A Probable RNA polymerase 41.1 21 0.00072 25.1 3.2 41 90-132 16-56 (70)
111 1ku3_A Sigma factor SIGA; heli 37.3 26 0.0009 25.3 3.2 41 93-134 13-57 (73)
112 1ig6_A MRF-2, modulator recogn 37.2 9.7 0.00033 30.6 0.8 40 44-83 37-87 (107)
113 3hug_A RNA polymerase sigma fa 36.9 30 0.001 26.2 3.6 38 94-132 41-78 (92)
114 1c20_A DEAD ringer protein; DN 34.7 35 0.0012 28.2 3.9 39 96-134 55-106 (128)
115 2kk0_A AT-rich interactive dom 34.5 31 0.0011 29.3 3.7 38 97-134 68-118 (145)
116 2jxj_A Histone demethylase jar 33.8 15 0.00053 28.7 1.5 38 97-134 40-89 (96)
117 2rq5_A Protein jumonji; develo 33.6 29 0.00099 28.8 3.2 75 34-134 7-96 (121)
118 2jrz_A Histone demethylase jar 32.2 16 0.00053 30.0 1.3 40 44-83 44-93 (117)
119 2p7v_B Sigma-70, RNA polymeras 31.2 29 0.00099 24.7 2.5 40 94-134 9-52 (68)
120 1c20_A DEAD ringer protein; DN 30.9 16 0.00053 30.4 1.1 40 44-83 56-106 (128)
121 2cxy_A BAF250B subunit, HBAF25 28.3 18 0.00062 29.9 1.1 39 44-82 55-103 (125)
122 2jvw_A Uncharacterized protein 27.7 10 0.00036 29.9 -0.5 46 42-100 18-70 (88)
123 2eqy_A RBP2 like, jumonji, at 25.6 23 0.0008 29.2 1.2 39 44-82 46-94 (122)
124 2p1m_A SKP1-like protein 1A; F 25.4 30 0.001 29.5 2.0 35 58-100 119-153 (160)
125 2k27_A Paired box protein PAX- 24.5 2.8E+02 0.0095 22.6 8.0 68 34-106 23-100 (159)
126 2q1z_A RPOE, ECF SIGE; ECF sig 24.5 69 0.0023 26.5 4.1 28 105-133 150-177 (184)
127 3i4p_A Transcriptional regulat 22.6 36 0.0012 28.7 2.0 45 93-138 3-48 (162)
128 1x3u_A Transcriptional regulat 22.5 80 0.0027 22.6 3.7 42 90-134 17-58 (79)
129 2kk0_A AT-rich interactive dom 22.5 36 0.0012 28.9 1.9 40 44-83 68-118 (145)
130 3ulq_B Transcriptional regulat 21.3 98 0.0034 23.6 4.1 45 87-134 27-71 (90)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.98 E-value=6e-33 Score=230.34 Aligned_cols=105 Identities=45% Similarity=0.851 Sum_probs=99.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCcch
Q 040726 31 GLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWS 110 (375)
Q Consensus 31 ~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~ 110 (375)
.+++|+||+|||++|+++|.+||.++|..||+.|++ |+++||++||.++|+|.+++++||+|||.+|+++|.+||.+|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 378999999999999999999998899999999988 9999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHhhhhHH
Q 040726 111 LIAGRIPGRTDNEIKNYWNTHLSKKL 136 (375)
Q Consensus 111 ~IA~~lpgRT~~qcrnRW~~~L~~~l 136 (375)
.||+.|||||+.+|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999997753
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=1.1e-32 Score=237.92 Aligned_cols=111 Identities=39% Similarity=0.753 Sum_probs=105.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCcchhhc
Q 040726 34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIA 113 (375)
Q Consensus 34 kg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA 113 (375)
||+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||.+|..||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 799999999999999999998899999999988 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCC
Q 040726 114 GRIPGRTDNEIKNYWNTHLSKKLISQGIDPRT 145 (375)
Q Consensus 114 ~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~ 145 (375)
+.|+|||+++|++||+.+|++++....++...
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~ 112 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEI 112 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 99999999999999999999998766554443
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.98 E-value=7.2e-33 Score=237.84 Aligned_cols=119 Identities=41% Similarity=0.796 Sum_probs=102.1
Q ss_pred HhccCCCCCccC-------CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCC
Q 040726 17 AAATNKSTPCCS-------KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGH 89 (375)
Q Consensus 17 ~~~~~~~~~~c~-------k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~ 89 (375)
+..++|+..+|. ++.+++|+||+|||++|+++|.+||.++|..||..|++ |++.||++||.++|+|.+++++
T Consensus 3 ~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~ 81 (128)
T 1h8a_C 3 AVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTS 81 (128)
T ss_dssp -------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSC
T ss_pred cccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhccccccccc
Confidence 345678888884 57899999999999999999999998899999999998 9999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHH
Q 040726 90 IAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136 (375)
Q Consensus 90 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l 136 (375)
||+|||++|+++|.+||++|..||+.|||||+.+|++||+.++++++
T Consensus 82 WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 82 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999987653
No 4
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=6.5e-34 Score=252.64 Aligned_cols=141 Identities=23% Similarity=0.501 Sum_probs=92.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCC-cc
Q 040726 31 GLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGN-RW 109 (375)
Q Consensus 31 ~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~-kW 109 (375)
++++++||+|||++|+++|.+||.++|..||+.|++ |+++||++||.++|+|.+++++||+|||.+|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 467899999999999999999998899999999987 9999999999999999999999999999999999999995 69
Q ss_pred hhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchhhcccCCCCcchhhhhcCCCCC
Q 040726 110 SLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSS 180 (375)
Q Consensus 110 ~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~~~~~~~~k~s~i~~~~~~~s~ 180 (375)
..||..|+|||+.||++||.++|++.+++ .+|+.++|..++..+...|.+|..|+..+.+++.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~--------~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~ 144 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKK--------TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTD 144 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCC--------SCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccc--------cCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCH
Confidence 99999999999999999999999887643 4677788888899999999999999999988753
No 5
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=1.1e-32 Score=230.21 Aligned_cols=104 Identities=26% Similarity=0.503 Sum_probs=99.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCcchhhc
Q 040726 34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIA 113 (375)
Q Consensus 34 kg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA 113 (375)
||+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||.+|+.+|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999998899999999998 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhhhhHHHh
Q 040726 114 GRIPGRTDNEIKNYWNTHLSKKLIS 138 (375)
Q Consensus 114 ~~lpgRT~~qcrnRW~~~L~~~l~~ 138 (375)
+.|||||+++|++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999998876543
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=4.9e-32 Score=232.45 Aligned_cols=107 Identities=35% Similarity=0.645 Sum_probs=101.3
Q ss_pred cCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhC
Q 040726 27 CSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLG 106 (375)
Q Consensus 27 c~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G 106 (375)
..+...+||+||+|||++|+++|.+||. +|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp BC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 3467889999999999999999999996 99999999988 999999999999999999999999999999999999999
Q ss_pred CcchhhcccCCCCCHHHHHHHHHHhhhhH
Q 040726 107 NRWSLIAGRIPGRTDNEIKNYWNTHLSKK 135 (375)
Q Consensus 107 ~kW~~IA~~lpgRT~~qcrnRW~~~L~~~ 135 (375)
.+|..||+.|||||+.+||+||+.++++.
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888653
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=2.5e-30 Score=229.54 Aligned_cols=118 Identities=42% Similarity=0.789 Sum_probs=104.3
Q ss_pred hccCCCCCccC-------CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCC
Q 040726 18 AATNKSTPCCS-------KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHI 90 (375)
Q Consensus 18 ~~~~~~~~~c~-------k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~W 90 (375)
..++|+..+|. ++.+++++||+|||++|+++|.+||.++|..||..|++ |++.||++||.++|+|.+++++|
T Consensus 35 ~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~W 113 (159)
T 1h89_C 35 YLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 113 (159)
T ss_dssp --------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCC
T ss_pred HcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCC
Confidence 34578888884 67899999999999999999999998789999999988 99999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHH
Q 040726 91 APDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136 (375)
Q Consensus 91 T~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l 136 (375)
|+|||.+|++++.+||++|..||+.|||||+++|++||+.++++++
T Consensus 114 T~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred ChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999987653
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.90 E-value=2.8e-25 Score=190.55 Aligned_cols=112 Identities=20% Similarity=0.400 Sum_probs=82.9
Q ss_pred cccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhhHHHh
Q 040726 60 LPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTHLSKKLIS 138 (375)
Q Consensus 60 IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~ 138 (375)
||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|++.+++
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 7888988 9999999999999999999999999999999999999995 6999999999999999999999999887654
Q ss_pred CCCCCCCCCCCCcCCCCCchhhcccCCCCcchhhhhcCCCCC
Q 040726 139 QGIDPRTHKPLNQELDPSSADQVTNSNSKASTSKAILNSSSS 180 (375)
Q Consensus 139 ~~~~p~~~kp~~~e~d~~~~~~~~~~~~k~s~i~~~~~~~s~ 180 (375)
.+|+.++|..++..+...|.+|..|+..+.+++.
T Consensus 80 --------~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~ 113 (128)
T 1h8a_C 80 --------TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTD 113 (128)
T ss_dssp --------SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCH
T ss_pred --------ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCH
Confidence 4677778888899999999999999999988753
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-21 Score=151.79 Aligned_cols=67 Identities=28% Similarity=0.576 Sum_probs=63.9
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHH
Q 040726 28 SKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEE 95 (375)
Q Consensus 28 ~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED 95 (375)
..+.+++++||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 346789999999999999999999998899999999997 9999999999999999999999999998
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.71 E-value=5e-18 Score=158.70 Aligned_cols=105 Identities=19% Similarity=0.316 Sum_probs=92.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCC-----ccccccccCccccccchhhhhhhccCCCCC------------------
Q 040726 30 VGLKRGPWTPEEDELLANYINKEGEGR-----WRTLPKRAGLLRCGKSCRLRWMNYLRPSVK------------------ 86 (375)
Q Consensus 30 ~~~kkg~WT~EED~~L~~lV~k~g~~~-----W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lk------------------ 86 (375)
..++|++||+|||++|+++|.+||..+ |..||+.|++ ||+.|||.||+.+|.+.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 457889999999999999999998643 9999999998 9999999999999999886
Q ss_pred -----------CCCCChHHHHHHHHHHHH-h-------------------------------------------------
Q 040726 87 -----------RGHIAPDEEDLILRLHRL-L------------------------------------------------- 105 (375)
Q Consensus 87 -----------kg~WT~EED~~Ll~lv~~-~------------------------------------------------- 105 (375)
+..||.+||-.|...+.+ |
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 889999999999999987 2
Q ss_pred ----C----CcchhhcccCCCCCHHHHHHHHHHhhhhH
Q 040726 106 ----G----NRWSLIAGRIPGRTDNEIKNYWNTHLSKK 135 (375)
Q Consensus 106 ----G----~kW~~IA~~lpgRT~~qcrnRW~~~L~~~ 135 (375)
| ..|..||+.+|+||...+|+||..+|+..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 1 16999999999999999999999888664
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-17 Score=130.50 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=47.2
Q ss_pred hhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhh
Q 040726 74 RLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHL 132 (375)
Q Consensus 74 r~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L 132 (375)
.-||.++|+|.+++++||+|||++|+++|.+||++|..||+.| |||+++||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 999999999998643
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-17 Score=127.47 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=59.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCC
Q 040726 82 RPSVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTH 146 (375)
Q Consensus 82 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~ 146 (375)
.|.+++++||+|||++|+++|.+|| .+|..||..|+|||+.|||+||+++|++.+++.+|+++++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 7999999999999999999999999999998877776553
No 13
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.67 E-value=2.1e-17 Score=140.75 Aligned_cols=83 Identities=25% Similarity=0.411 Sum_probs=77.1
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----CccccccchhhhhhhccC-----CCCCCC-CCChHHHHH
Q 040726 28 SKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRA----GLLRCGKSCRLRWMNYLR-----PSVKRG-HIAPDEEDL 97 (375)
Q Consensus 28 ~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~----~~~Rt~~QCr~Rw~~~L~-----p~lkkg-~WT~EED~~ 97 (375)
.++..++++||.|||+.|+++|.+||.++|..|++.+ ++ ||+.+|++||+++|+ |.++++ +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 3466789999999999999999999988999999985 55 999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCcchh
Q 040726 98 ILRLHRLLGNRWSL 111 (375)
Q Consensus 98 Ll~lv~~~G~kW~~ 111 (375)
|+.++..+|++|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999977
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.3e-17 Score=123.57 Aligned_cols=60 Identities=27% Similarity=0.359 Sum_probs=57.1
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCC
Q 040726 80 YLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQG 140 (375)
Q Consensus 80 ~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~ 140 (375)
+|+|.+++++||+|||++|+++|.+||.+|.+||+ |+|||++|||+||+++|++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999987653
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=4.2e-17 Score=122.22 Aligned_cols=57 Identities=26% Similarity=0.514 Sum_probs=53.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCC
Q 040726 29 KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVK 86 (375)
Q Consensus 29 k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lk 86 (375)
.+.+++++||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 46789999999999999999999998899999999998 9999999999999999875
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.66 E-value=3.4e-17 Score=139.62 Aligned_cols=79 Identities=29% Similarity=0.441 Sum_probs=72.6
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----Cccccccchhhhhhhcc-----CCCCCCCCCChHH-HHHH
Q 040726 29 KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRA----GLLRCGKSCRLRWMNYL-----RPSVKRGHIAPDE-EDLI 98 (375)
Q Consensus 29 k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~----~~~Rt~~QCr~Rw~~~L-----~p~lkkg~WT~EE-D~~L 98 (375)
+...++++||.|||+.|+++|++||.++|..|++.+ .+ ||+.+|++||+++| +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 455689999999999999999999999999999864 45 99999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCc
Q 040726 99 LRLHRLLGNR 108 (375)
Q Consensus 99 l~lv~~~G~k 108 (375)
+.++..||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999975
No 17
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=1.1e-16 Score=124.47 Aligned_cols=64 Identities=25% Similarity=0.308 Sum_probs=58.4
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCC
Q 040726 81 LRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRT 145 (375)
Q Consensus 81 L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~ 145 (375)
++|.+++++||+|||++|+++|.+||.+|..||.+|+|||+.|||+||+.+|++.++. ++++.+
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~ 66 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKET 66 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCc
Confidence 5789999999999999999999999999999999999999999999999999887665 665544
No 18
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.65 E-value=2.8e-17 Score=140.62 Aligned_cols=91 Identities=16% Similarity=0.394 Sum_probs=81.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchhhc
Q 040726 82 RPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQV 161 (375)
Q Consensus 82 ~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~~~ 161 (375)
.+..++++||+|||++|+++|.+||.+|..||..|+||+..||+.||.++|++.+++ .+|+.++|..++..+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~--------~~WT~eEd~~L~~~v 77 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISH--------TPWTAEEDALLVQKI 77 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCC--------SCCCHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccccc--------ccCCHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999887654 367788888899999
Q ss_pred ccCCCCcchhhhhcCCCCC
Q 040726 162 TNSNSKASTSKAILNSSSS 180 (375)
Q Consensus 162 ~~~~~k~s~i~~~~~~~s~ 180 (375)
...|.+|..|+..+.+++.
T Consensus 78 ~~~G~~W~~Ia~~l~gRt~ 96 (126)
T 3osg_A 78 QEYGRQWAIIAKFFPGRTD 96 (126)
T ss_dssp HHHCSCHHHHHTTSTTCCH
T ss_pred HHHCcCHHHHHHHcCCCCH
Confidence 9999999999999988753
No 19
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.65 E-value=1.6e-17 Score=137.30 Aligned_cols=89 Identities=19% Similarity=0.401 Sum_probs=79.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchhhcc
Q 040726 84 SVKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVT 162 (375)
Q Consensus 84 ~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~~~~ 162 (375)
++++++||+|||++|+++|.+||. +|..||..|+|||..||+.||.++|++.+++ .+|+.++|..++..+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~--------~~Wt~eEd~~L~~~~~ 72 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK--------TSWTEEEDRIIYQAHK 72 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCC--------CCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccc--------cCCCHHHHHHHHHHHH
Confidence 368999999999999999999996 7999999999999999999999999887643 4677888888899999
Q ss_pred cCCCCcchhhhhcCCCCC
Q 040726 163 NSNSKASTSKAILNSSSS 180 (375)
Q Consensus 163 ~~~~k~s~i~~~~~~~s~ 180 (375)
..|.+|..|+..+.+++.
T Consensus 73 ~~G~~W~~Ia~~l~gRt~ 90 (105)
T 1gv2_A 73 RLGNRWAEIAKLLPGRTD 90 (105)
T ss_dssp HHSSCHHHHHTTCTTCCH
T ss_pred HhCCCHHHHHHHcCCCCH
Confidence 999999999999988753
No 20
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.65 E-value=5.7e-17 Score=118.12 Aligned_cols=52 Identities=46% Similarity=0.876 Sum_probs=49.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCC
Q 040726 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPS 84 (375)
Q Consensus 32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~ 84 (375)
++|++||+|||++|+++|.+||.++|..||+.|++ |+++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57999999999999999999998789999999988 99999999999999984
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.63 E-value=8.2e-17 Score=117.19 Aligned_cols=52 Identities=31% Similarity=0.684 Sum_probs=48.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCC
Q 040726 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPS 84 (375)
Q Consensus 32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~ 84 (375)
+++++||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57899999999999999999998799999999998 99999999999999984
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.62 E-value=3.9e-17 Score=135.87 Aligned_cols=86 Identities=17% Similarity=0.262 Sum_probs=77.9
Q ss_pred CCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchhhcccCC
Q 040726 87 RGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSN 165 (375)
Q Consensus 87 kg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~~~~~~~ 165 (375)
+++||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|++.+++ .||+.++|..++..+...|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~--------~~WT~eEd~~L~~~~~~~G 72 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRT--------DPWSPEEDMLLDQKYAEYG 72 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTT--------CCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccc--------cccCHHHHHHHHHHHHHhC
Confidence 589999999999999999995 8999999999999999999999999987654 4677788888999999999
Q ss_pred CCcchhhhhcCCCCC
Q 040726 166 SKASTSKAILNSSSS 180 (375)
Q Consensus 166 ~k~s~i~~~~~~~s~ 180 (375)
.+|..|+..+.+++.
T Consensus 73 ~~W~~Ia~~l~gRt~ 87 (107)
T 2k9n_A 73 PKWNKISKFLKNRSD 87 (107)
T ss_dssp SCHHHHHHHHSSSCH
T ss_pred cCHHHHHHHCCCCCH
Confidence 999999999988753
No 23
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2e-16 Score=118.44 Aligned_cols=55 Identities=25% Similarity=0.453 Sum_probs=52.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhhHH
Q 040726 82 RPSVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLSKKL 136 (375)
Q Consensus 82 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l 136 (375)
+|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.|||+||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5788999999999999999999999 699999999999999999999999998865
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.62 E-value=1.3e-16 Score=122.85 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=57.1
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccC--ccccccchhhhhhhccCCCCCCCCCC
Q 040726 29 KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAG--LLRCGKSCRLRWMNYLRPSVKRGHIA 91 (375)
Q Consensus 29 k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~--~~Rt~~QCr~Rw~~~L~p~lkkg~WT 91 (375)
++..++++||+|||++|+++|.+||.++|..||..|+ + |++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 3456899999999999999999999889999999998 6 999999999999999999988764
No 25
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.61 E-value=1.1e-16 Score=137.59 Aligned_cols=86 Identities=21% Similarity=0.379 Sum_probs=78.3
Q ss_pred CCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCCchhhcccCC
Q 040726 87 RGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPSSADQVTNSN 165 (375)
Q Consensus 87 kg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~~~~~~~~~~ 165 (375)
+|+||+|||++|+.+|.+|| .+|..||..|+|||..||+.||.++|.+.++++ +|+.++|..++..+...|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~--------~Wt~eEd~~L~~~~~~~G 73 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKH--------AWTPEEDETIFRNYLKLG 73 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCS--------CCCHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCC--------CCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999 689999999999999999999999999887654 677788888899999999
Q ss_pred CCcchhhhhcCCCCC
Q 040726 166 SKASTSKAILNSSSS 180 (375)
Q Consensus 166 ~k~s~i~~~~~~~s~ 180 (375)
.+|+.|+..+.+++.
T Consensus 74 ~~W~~Ia~~l~gRt~ 88 (131)
T 3zqc_A 74 SKWSVIAKLIPGRTD 88 (131)
T ss_dssp SCHHHHTTTSTTCCH
T ss_pred cCHHHHHHHcCCCCH
Confidence 999999999988754
No 26
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.60 E-value=7.3e-16 Score=112.13 Aligned_cols=50 Identities=24% Similarity=0.526 Sum_probs=46.6
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726 85 VKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTHLSK 134 (375)
Q Consensus 85 lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcrnRW~~~L~~ 134 (375)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+++|+|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 999999999999999999999999976
No 27
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.59 E-value=1.1e-15 Score=111.34 Aligned_cols=50 Identities=28% Similarity=0.670 Sum_probs=47.5
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726 85 VKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTHLSK 134 (375)
Q Consensus 85 lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcrnRW~~~L~~ 134 (375)
+++++||+|||++|+++|.+||. +|..||..|+|||+.|||+||.++|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999996 699999999999999999999999976
No 28
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.58 E-value=1.6e-15 Score=116.79 Aligned_cols=61 Identities=28% Similarity=0.275 Sum_probs=55.7
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHhhhhHHHhCC
Q 040726 80 YLRPSVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIP--GRTDNEIKNYWNTHLSKKLISQG 140 (375)
Q Consensus 80 ~L~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcrnRW~~~L~~~l~~~~ 140 (375)
...+..++++||+|||++|+++|.+|| ++|..||..|+ |||+.|||+||+++|++.+.+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 346678899999999999999999999 69999999999 99999999999999999887654
No 29
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.58 E-value=3.9e-16 Score=118.98 Aligned_cols=54 Identities=30% Similarity=0.500 Sum_probs=49.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccC--ccccccchhhhhhhccCCCCC
Q 040726 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAG--LLRCGKSCRLRWMNYLRPSVK 86 (375)
Q Consensus 32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~--~~Rt~~QCr~Rw~~~L~p~lk 86 (375)
.+|++||+|||++|+++|.+||.++|..||+.++ + |++.||++||+++++|+++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVN-RTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCC-CCHHHHHHHHHHHhccCCC
Confidence 4788999999999999999999889999999865 5 9999999999999998764
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.3e-15 Score=114.30 Aligned_cols=54 Identities=19% Similarity=0.435 Sum_probs=50.9
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCC
Q 040726 30 VGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPS 84 (375)
Q Consensus 30 ~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~ 84 (375)
+.+++++||+|||++|+++|.+||.++|..||+.|++ |+++||++||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence 4688999999999999999999998899999999998 99999999999999865
No 31
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=4.9e-15 Score=111.16 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=49.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726 82 RPSVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLSK 134 (375)
Q Consensus 82 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L~~ 134 (375)
.+.+.+++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||.++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 7999999999999999999999999854
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.53 E-value=7e-15 Score=107.52 Aligned_cols=49 Identities=27% Similarity=0.290 Sum_probs=46.3
Q ss_pred CCCCCChHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHhhhh
Q 040726 86 KRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIP--GRTDNEIKNYWNTHLSK 134 (375)
Q Consensus 86 kkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcrnRW~~~L~~ 134 (375)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999 69999999999 99999999999999864
No 33
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.52 E-value=2.6e-15 Score=109.81 Aligned_cols=49 Identities=31% Similarity=0.478 Sum_probs=46.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccccccC--ccccccchhhhhhhccC
Q 040726 33 KRGPWTPEEDELLANYINKEGEGRWRTLPKRAG--LLRCGKSCRLRWMNYLR 82 (375)
Q Consensus 33 kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~--~~Rt~~QCr~Rw~~~L~ 82 (375)
++++||+|||++|+++|.+||.++|..||..|+ + |++.||++||.++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999999 6 999999999999875
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=9.8e-15 Score=113.95 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=53.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhC------CcchhhcccCCCCCHHHHHHHHHHhhhhHHHhC
Q 040726 82 RPSVKRGHIAPDEEDLILRLHRLLG------NRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQ 139 (375)
Q Consensus 82 ~p~lkkg~WT~EED~~Ll~lv~~~G------~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~ 139 (375)
+|.+.+++||+|||++|+++|.+|| .+|.+||..|+|||..|||+||+++|.+.++.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999999999999 689999999999999999999999998876544
No 35
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.50 E-value=1.2e-14 Score=110.65 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=47.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHhhhhHH
Q 040726 85 VKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIP--GRTDNEIKNYWNTHLSKKL 136 (375)
Q Consensus 85 lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcrnRW~~~L~~~l 136 (375)
.++++||+|||++|+++|.+|| .+|..||+.++ |||+.|||+||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 58999999865 9999999999999987754
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.5e-15 Score=116.52 Aligned_cols=62 Identities=24% Similarity=0.311 Sum_probs=56.2
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCC-----CCccccccccCccccccchhhhhhhccCCCCCCCCC
Q 040726 28 SKVGLKRGPWTPEEDELLANYINKEGE-----GRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHI 90 (375)
Q Consensus 28 ~k~~~kkg~WT~EED~~L~~lV~k~g~-----~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~W 90 (375)
+++.+++++||+|||++|+++|.+||. ++|..||+.|++ |+..||+.||.+||.+.++.|..
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCCC
Confidence 367889999999999999999999996 689999999998 99999999999999887776643
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.49 E-value=8.4e-15 Score=109.27 Aligned_cols=50 Identities=22% Similarity=0.463 Sum_probs=46.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccC-ccccccchhhhhhhcc
Q 040726 31 GLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAG-LLRCGKSCRLRWMNYL 81 (375)
Q Consensus 31 ~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~-~~Rt~~QCr~Rw~~~L 81 (375)
.+.+++||+|||++|+++|.+||.++|..||+.|+ + |+++||++||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~-Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNA-RTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSS-CCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCC-CCHHHHHHHHHHHc
Confidence 46788999999999999999999889999999999 6 99999999999875
No 38
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.2e-15 Score=114.91 Aligned_cols=58 Identities=24% Similarity=0.356 Sum_probs=52.7
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCC
Q 040726 28 SKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRG 88 (375)
Q Consensus 28 ~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg 88 (375)
.+|.+++++||+|||++|+++|+.||. +|..||+ +++ |++.||++||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCC
Confidence 357899999999999999999999995 9999999 776 999999999999999876654
No 39
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=4.3e-14 Score=105.43 Aligned_cols=50 Identities=26% Similarity=0.354 Sum_probs=46.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhC-CcchhhcccCC-CCCHHHHHHHHHHhh
Q 040726 83 PSVKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIP-GRTDNEIKNYWNTHL 132 (375)
Q Consensus 83 p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~qcrnRW~~~L 132 (375)
..+.+++||+|||.+|+++|.+|| ++|..||+.|+ +||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456788999999999999999999 89999999999 999999999998875
No 40
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-14 Score=117.78 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=53.3
Q ss_pred hccCCCCCCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhH
Q 040726 79 NYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKK 135 (375)
Q Consensus 79 ~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~~ 135 (375)
..++|.+++++||+|||++|+++|.+||.+|..||..|+|||++||++||+++|++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 356789999999999999999999999999999999999999999999999998664
No 41
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.43 E-value=1.6e-14 Score=112.18 Aligned_cols=58 Identities=29% Similarity=0.362 Sum_probs=52.9
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCC
Q 040726 28 SKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKR 87 (375)
Q Consensus 28 ~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkk 87 (375)
..+.+++++||+|||++|+++|.+||. +|..||+.|++ |+..||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 356789999999999999999999995 99999999998 99999999999999876655
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.37 E-value=3.9e-13 Score=111.86 Aligned_cols=77 Identities=27% Similarity=0.413 Sum_probs=66.4
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----Cccccccchhhhhhhcc-----CCCCCCCCCChHHHHH-H
Q 040726 29 KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRA----GLLRCGKSCRLRWMNYL-----RPSVKRGHIAPDEEDL-I 98 (375)
Q Consensus 29 k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~----~~~Rt~~QCr~Rw~~~L-----~p~lkkg~WT~EED~~-L 98 (375)
+...++++||+|||++|+++|.+||.++|..|++.+ ++ ||..+|++||++++ +|.++++.-++.|-.. +
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADH-RTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 345689999999999999999999998999999975 45 99999999999998 7899999888887655 7
Q ss_pred HHHHHHhC
Q 040726 99 LRLHRLLG 106 (375)
Q Consensus 99 l~lv~~~G 106 (375)
++|...+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776665
No 43
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.35 E-value=3.1e-13 Score=105.53 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=47.3
Q ss_pred ccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCC
Q 040726 26 CCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVK 86 (375)
Q Consensus 26 ~c~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lk 86 (375)
-.-.|.+++++||+|||++|+++|.+||. +|..||+.| + |++.+|+.||.. |....+
T Consensus 15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp ----CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCS
T ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHcc
Confidence 34578999999999999999999999995 799999999 6 999999999985 444433
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.34 E-value=4e-13 Score=106.39 Aligned_cols=57 Identities=23% Similarity=0.387 Sum_probs=50.9
Q ss_pred CCCCccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhc
Q 040726 22 KSTPCCSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNY 80 (375)
Q Consensus 22 ~~~~~c~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~ 80 (375)
+....+.+....+++||+|||++|+++|.+|| ++|.+||+.|++ |+..||+.||.++
T Consensus 6 ~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 6 SGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp SCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred cCccCCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 33334566778899999999999999999999 799999999998 9999999999998
No 45
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.33 E-value=6.3e-13 Score=106.24 Aligned_cols=69 Identities=29% Similarity=0.520 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cCccccccchhhhhhhcc-----CCCCCCC-CCChHHHHHHHHHHHH
Q 040726 35 GPWTPEEDELLANYINKEGEGRWRTLPKR----AGLLRCGKSCRLRWMNYL-----RPSVKRG-HIAPDEEDLILRLHRL 104 (375)
Q Consensus 35 g~WT~EED~~L~~lV~k~g~~~W~~IA~~----~~~~Rt~~QCr~Rw~~~L-----~p~lkkg-~WT~EED~~Ll~lv~~ 104 (375)
++||+|||++|+++|.+||.++|..|++. +++ ||+.+|++||+++| .|.++++ +..++.+.+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999985 666 99999999999988 6766655 5666777888887654
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.32 E-value=1.2e-12 Score=102.11 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=47.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHhhh
Q 040726 83 PSVKRGHIAPDEEDLILRLHRLLG----NRWSLIAGRIPGRTDNEIKNYWNTHLS 133 (375)
Q Consensus 83 p~lkkg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcrnRW~~~L~ 133 (375)
+.+.+++||.+||.+|+.++..|| .+|.+||..|||||.++|++||..++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999 689999999999999999999998763
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.26 E-value=1.9e-12 Score=102.50 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=45.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHh
Q 040726 84 SVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH 131 (375)
Q Consensus 84 ~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~ 131 (375)
...+++||+|||.+|+++|.+||.+|.+||++|++||..||+.||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999866
No 48
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.23 E-value=5.3e-12 Score=118.16 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=58.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCc------chhhcccCCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCCC
Q 040726 83 PSVKRGHIAPDEEDLILRLHRLLGNR------WSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDPS 156 (375)
Q Consensus 83 p~lkkg~WT~EED~~Ll~lv~~~G~k------W~~IA~~lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~~ 156 (375)
+.+++++||+|||++|+++|++||++ |..||+.|||||+++||+||+.+|++++... | ..+++..
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y--------~~ded~~ 74 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-Y--------EVDKFGK 74 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-E--------CBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-c--------ccCcchh
Confidence 35778999999999999999999975 9999999999999999999999999986522 3 3344444
Q ss_pred chhhcccCCCCcchhh
Q 040726 157 SADQVTNSNSKASTSK 172 (375)
Q Consensus 157 ~~~~~~~~~~k~s~i~ 172 (375)
++.... |. |..++
T Consensus 75 Li~d~~--Gn-~ikis 87 (246)
T 1ign_A 75 LVRDDD--GN-LIKTK 87 (246)
T ss_dssp BCBCTT--SC-BCEES
T ss_pred hhhccC--CC-ceeee
Confidence 444433 44 66665
No 49
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.21 E-value=3.1e-12 Score=99.86 Aligned_cols=55 Identities=15% Similarity=0.353 Sum_probs=49.5
Q ss_pred cCCCCCCcCCCCHHHHHHHHHHHHHhC---CCCccccccccCccccccchhhhhhhccC
Q 040726 27 CSKVGLKRGPWTPEEDELLANYINKEG---EGRWRTLPKRAGLLRCGKSCRLRWMNYLR 82 (375)
Q Consensus 27 c~k~~~kkg~WT~EED~~L~~lV~k~g---~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~ 82 (375)
-.++...+++||+|||.+|+++|.+|| ..+|.+||+.|++ ||.+||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 456778899999999999999999998 3589999999998 999999999998764
No 50
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.84 E-value=1.3e-12 Score=105.60 Aligned_cols=53 Identities=21% Similarity=0.423 Sum_probs=48.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCC
Q 040726 29 KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83 (375)
Q Consensus 29 k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p 83 (375)
.+.+++++||+|||++|+++|.+||. +|..||..|++ ||..||+.||.++|..
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 45678999999999999999999995 89999999998 9999999999998863
No 51
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.19 E-value=2e-11 Score=101.58 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=48.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhCC-cchhhcccC----CCCCHHHHHHHHHHhhhhH
Q 040726 82 RPSVKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRI----PGRTDNEIKNYWNTHLSKK 135 (375)
Q Consensus 82 ~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~l----pgRT~~qcrnRW~~~L~~~ 135 (375)
.+..++++||+|||+.|+++|.+||. +|..|++.+ ++||+.+||+||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34578899999999999999999996 999999975 8999999999999998643
No 52
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.19 E-value=2.1e-11 Score=91.93 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=45.5
Q ss_pred CCCCCChHHHHHHHHHHHHhCCcchhhc---ccCCCCCHHHHHHHHHHhhhh
Q 040726 86 KRGHIAPDEEDLILRLHRLLGNRWSLIA---GRIPGRTDNEIKNYWNTHLSK 134 (375)
Q Consensus 86 kkg~WT~EED~~Ll~lv~~~G~kW~~IA---~~lpgRT~~qcrnRW~~~L~~ 134 (375)
++.+||+|||+.|++.|++||.+|..|+ .++++||...+++||+++++.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 5789999999999999999999999999 678999999999999988753
No 53
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.17 E-value=2e-11 Score=97.46 Aligned_cols=48 Identities=23% Similarity=0.391 Sum_probs=44.4
Q ss_pred CCCChHHHHHHHHHHHHhCC-cchhhccc----CCCCCHHHHHHHHHHhhhhH
Q 040726 88 GHIAPDEEDLILRLHRLLGN-RWSLIAGR----IPGRTDNEIKNYWNTHLSKK 135 (375)
Q Consensus 88 g~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~qcrnRW~~~L~~~ 135 (375)
.+||+|||+.|+++|.+||. +|..|++. |+|||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999996 99999985 89999999999999999654
No 54
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.17 E-value=1.4e-11 Score=104.98 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=47.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhCC-cchhhccc----CCCCCHHHHHHHHHHhhhhH
Q 040726 82 RPSVKRGHIAPDEEDLILRLHRLLGN-RWSLIAGR----IPGRTDNEIKNYWNTHLSKK 135 (375)
Q Consensus 82 ~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~qcrnRW~~~L~~~ 135 (375)
....++++||.|||+.|+++|.+||. +|..|++. |++||+.+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34457899999999999999999996 99999986 48999999999999999543
No 55
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.17 E-value=1.2e-11 Score=105.15 Aligned_cols=87 Identities=21% Similarity=0.275 Sum_probs=62.4
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhCC-cchhhccc----CCCCCHHHHHHHHHHhhhhHHHhCCCCCCCCCCCCcCCCC
Q 040726 81 LRPSVKRGHIAPDEEDLILRLHRLLGN-RWSLIAGR----IPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNQELDP 155 (375)
Q Consensus 81 L~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~qcrnRW~~~L~~~l~~~~~~p~~~kp~~~e~d~ 155 (375)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++........ +...++..+++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~--krg~~~p~e~~~ 88 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQ--RRGEPVPQDLLD 88 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTT--CCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcc--cCCCCCCHHHHH
Confidence 566788999999999999999999996 99999998 48999999999999999743321111 112244444444
Q ss_pred CchhhcccCCCCcc
Q 040726 156 SSADQVTNSNSKAS 169 (375)
Q Consensus 156 ~~~~~~~~~~~k~s 169 (375)
.+.......|.+|.
T Consensus 89 rv~~~h~~~gn~~~ 102 (121)
T 2juh_A 89 RVLAAHAYWSQQQG 102 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccchh
Confidence 44444444444544
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.10 E-value=6.9e-11 Score=96.30 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=45.3
Q ss_pred CCCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHhhhhH
Q 040726 86 KRGHIAPDEEDLILRLHRLLG----NRWSLIAGRIPGRTDNEIKNYWNTHLSKK 135 (375)
Q Consensus 86 kkg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcrnRW~~~L~~~ 135 (375)
.+++||.|||++|+.++.+|| .+|.+||..|||||.++|++||..++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999999999999999999987653
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.92 E-value=1.1e-09 Score=88.94 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=60.6
Q ss_pred cccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCcchhhcccC-----CCCCHHHHHHHHHHhhhhHHHhCC
Q 040726 69 CGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRI-----PGRTDNEIKNYWNTHLSKKLISQG 140 (375)
Q Consensus 69 t~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~l-----pgRT~~qcrnRW~~~L~~~l~~~~ 140 (375)
...=+.++|.++|.+ .+||.||++.|++|+++||.+|..|+.++ ++||..++|+||+.+.++.+..++
T Consensus 16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345678999999976 79999999999999999999999999999 589999999999999887776553
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.91 E-value=2.2e-10 Score=93.37 Aligned_cols=47 Identities=13% Similarity=0.361 Sum_probs=43.0
Q ss_pred cCCCCHHHHHHHHHHHHHhC---CCCccccccccCccccccchhhhhhhcc
Q 040726 34 RGPWTPEEDELLANYINKEG---EGRWRTLPKRAGLLRCGKSCRLRWMNYL 81 (375)
Q Consensus 34 kg~WT~EED~~L~~lV~k~g---~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L 81 (375)
+++||.|||++|++++.+|+ .++|.+||+.|++ ||.++|+.||.+++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 56899999999999999997 4579999999998 99999999998864
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.7e-09 Score=81.22 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=43.8
Q ss_pred CCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhh
Q 040726 86 KRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHL 132 (375)
Q Consensus 86 kkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L 132 (375)
..++||+||++++++++.+||++|..||..||+||..+|+.+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999998654
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.77 E-value=4.2e-09 Score=81.84 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=45.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHhhhhH
Q 040726 84 SVKRGHIAPDEEDLILRLHRLLG----NRWSLIAGRIPGRTDNEIKNYWNTHLSKK 135 (375)
Q Consensus 84 ~lkkg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcrnRW~~~L~~~ 135 (375)
..+.+.||.|||++|.+++.+|+ .+|.+||..| |||..+|+.||..+....
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 45678999999999999999997 5799999998 999999999999876553
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.70 E-value=5.3e-09 Score=78.79 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=42.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccc---cccCccccccchhhhhhhccC
Q 040726 33 KRGPWTPEEDELLANYINKEGEGRWRTLP---KRAGLLRCGKSCRLRWMNYLR 82 (375)
Q Consensus 33 kkg~WT~EED~~L~~lV~k~g~~~W~~IA---~~~~~~Rt~~QCr~Rw~~~L~ 82 (375)
.+++||+|||+.|+++|++||. +|..|+ ..+.+ |+...+++||++...
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 6789999999999999999996 999999 45555 999999999998754
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.62 E-value=2.8e-08 Score=92.32 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=45.9
Q ss_pred CCCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726 86 KRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSK 134 (375)
Q Consensus 86 kkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~ 134 (375)
...+||+||+.++++++.+||++|..||+.|++||..|||++|+++.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999988754
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.9e-08 Score=75.43 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=43.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhcc
Q 040726 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 81 (375)
Q Consensus 32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L 81 (375)
-..++||+||++++++++.+|| .+|..||..|++ |+..+|+.+|....
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~-rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLER-KSVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTT-SCHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence 3668999999999999999999 699999999998 99999999997643
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.49 E-value=2.7e-08 Score=77.31 Aligned_cols=48 Identities=19% Similarity=0.242 Sum_probs=42.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---CCccccccccCccccccchhhhhhhccC
Q 040726 33 KRGPWTPEEDELLANYINKEGE---GRWRTLPKRAGLLRCGKSCRLRWMNYLR 82 (375)
Q Consensus 33 kkg~WT~EED~~L~~lV~k~g~---~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~ 82 (375)
+++.||.|||++|.+++.+|+. +.|.+||+.+ + |+..+|+.||..+..
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHHH
Confidence 5678999999999999999973 5699999998 4 999999999987653
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.42 E-value=1e-07 Score=97.50 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=42.7
Q ss_pred CCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhh
Q 040726 88 GHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLS 133 (375)
Q Consensus 88 g~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~ 133 (375)
..||.||..++++++.+||.+|..||+.++.||..|||++|..+.+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999976543
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.36 E-value=3.7e-07 Score=71.02 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=43.2
Q ss_pred CCCCChHHHHHHHHHHHHhCC----cchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726 87 RGHIAPDEEDLILRLHRLLGN----RWSLIAGRIPGRTDNEIKNYWNTHLSK 134 (375)
Q Consensus 87 kg~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~qcrnRW~~~L~~ 134 (375)
...||.+|+.+|..++..|+. +|.+||..|+|||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999984 699999999999999999999977543
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.34 E-value=3.5e-07 Score=68.31 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=42.5
Q ss_pred CCCCChHHHHHHHHHHHHh--------CCc-chhhcc-cCCCCCHHHHHHHHHHhhh
Q 040726 87 RGHIAPDEEDLILRLHRLL--------GNR-WSLIAG-RIPGRTDNEIKNYWNTHLS 133 (375)
Q Consensus 87 kg~WT~EED~~Ll~lv~~~--------G~k-W~~IA~-~lpgRT~~qcrnRW~~~L~ 133 (375)
|.+||+|||..|++.|.+| |++ |..+++ .+|++|-.+||+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 543 999999 7999999999999998774
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.31 E-value=1.5e-07 Score=70.32 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=42.5
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccCccccccchhhhhhhccC
Q 040726 34 RGPWTPEEDELLANYINKE--------GEGRWRTLPK-RAGLLRCGKSCRLRWMNYLR 82 (375)
Q Consensus 34 kg~WT~EED~~L~~lV~k~--------g~~~W~~IA~-~~~~~Rt~~QCr~Rw~~~L~ 82 (375)
|.+||+|||++|+++|.+| |..-|..+++ .++. ++..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 5689999999999999999 4345999999 7876 999999999999875
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.29 E-value=1.8e-07 Score=72.78 Aligned_cols=48 Identities=21% Similarity=0.415 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CCccccccccCccccccchhhhhhhccCC
Q 040726 35 GPWTPEEDELLANYINKEGE---GRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83 (375)
Q Consensus 35 g~WT~EED~~L~~lV~k~g~---~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p 83 (375)
..||.+|+.+|.+++..|+. ++|.+||..+++ |+..+|+.||..++.-
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPRG 59 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHhc
Confidence 47999999999999999975 469999999998 9999999999987643
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.18 E-value=6.6e-07 Score=83.17 Aligned_cols=49 Identities=24% Similarity=0.359 Sum_probs=44.9
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccC
Q 040726 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLR 82 (375)
Q Consensus 32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~ 82 (375)
....+||.||++++++++.+|| ++|..||+.+++ |+..||+.+|.++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3567899999999999999999 699999999998 999999999998764
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=6.9e-06 Score=61.87 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=45.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhCCcchhhcc-cCCCCCHHHHHHHHHHh
Q 040726 82 RPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAG-RIPGRTDNEIKNYWNTH 131 (375)
Q Consensus 82 ~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~qcrnRW~~~ 131 (375)
.|.++...||+||-.+..+++.+||.+|..|++ .|++||..+|...|+..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 367788899999999999999999999999998 69999999999998744
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.92 E-value=2.9e-06 Score=65.82 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=38.7
Q ss_pred CCCCChHHHHHHHHHHHHhCC----cchhhcccCCCCCHHHHHHHHH
Q 040726 87 RGHIAPDEEDLILRLHRLLGN----RWSLIAGRIPGRTDNEIKNYWN 129 (375)
Q Consensus 87 kg~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~qcrnRW~ 129 (375)
...||.+|+++|..++..|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999984 7999999999999999999984
No 73
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.87 E-value=1.8e-05 Score=64.08 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=52.1
Q ss_pred hhhhhccCCCCCCCCCChHHHHHHHHHHHHhCCcchhhcccCC-----CCCHHHHHHHHHHhhhhHHHhC
Q 040726 75 LRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIP-----GRTDNEIKNYWNTHLSKKLISQ 139 (375)
Q Consensus 75 ~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA~~lp-----gRT~~qcrnRW~~~L~~~l~~~ 139 (375)
+.|..+|.. ..||.||...|++|+++|+-+|..|+..+. .||-.++|.||+.+.++.+..+
T Consensus 22 eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 456666653 589999999999999999999999998874 7999999999999988776654
No 74
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.87 E-value=9.3e-06 Score=65.26 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=42.7
Q ss_pred CCCChHHHHHHHHHHHHhCC---cchhhcccCCCCCHHHHHHHHHHhhh
Q 040726 88 GHIAPDEEDLILRLHRLLGN---RWSLIAGRIPGRTDNEIKNYWNTHLS 133 (375)
Q Consensus 88 g~WT~EED~~Ll~lv~~~G~---kW~~IA~~lpgRT~~qcrnRW~~~L~ 133 (375)
--||.|||..||..+++-|. .|..||+.|.+|+.+|+++||+.+++
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 46999999999999999985 79999999999999999999998874
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.84 E-value=3.5e-06 Score=65.36 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CCccccccccCccccccchhhhhh
Q 040726 35 GPWTPEEDELLANYINKEGE---GRWRTLPKRAGLLRCGKSCRLRWM 78 (375)
Q Consensus 35 g~WT~EED~~L~~lV~k~g~---~~W~~IA~~~~~~Rt~~QCr~Rw~ 78 (375)
+.||.||+++|..++..|+. ..|.+||..+|+ |+..+|+.+|.
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 46999999999999999975 379999999998 99999999985
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.81 E-value=3.2e-05 Score=75.05 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhh-------hhhhc---------------------------
Q 040726 35 GPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRL-------RWMNY--------------------------- 80 (375)
Q Consensus 35 g~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~-------Rw~~~--------------------------- 80 (375)
+.||..|...++.++.+||..+|..||..|++ ++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999987 88766642 22110
Q ss_pred -------------c---CCCCCCCCCChHHHHHHHHHHHHhCC----cchhhcc------------cCCCCCHHHHHHHH
Q 040726 81 -------------L---RPSVKRGHIAPDEEDLILRLHRLLGN----RWSLIAG------------RIPGRTDNEIKNYW 128 (375)
Q Consensus 81 -------------L---~p~lkkg~WT~EED~~Ll~lv~~~G~----kW~~IA~------------~lpgRT~~qcrnRW 128 (375)
| -+..+...||.+||..|+-++.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 01224467999999999999999994 5999962 45679999999999
Q ss_pred HHhhhh
Q 040726 129 NTHLSK 134 (375)
Q Consensus 129 ~~~L~~ 134 (375)
..+++-
T Consensus 270 ~tLi~~ 275 (304)
T 1ofc_X 270 NTLITL 275 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988854
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.95 E-value=3.7e-06 Score=64.12 Aligned_cols=44 Identities=11% Similarity=0.313 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHHhCC---cchhhcccCCCCCHHHHHHHHHHhhh
Q 040726 89 HIAPDEEDLILRLHRLLGN---RWSLIAGRIPGRTDNEIKNYWNTHLS 133 (375)
Q Consensus 89 ~WT~EED~~Ll~lv~~~G~---kW~~IA~~lpgRT~~qcrnRW~~~L~ 133 (375)
-||.|||..|+..+++-|. .|..||..| +|+.+||.+||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999996 799999999 9999999999998763
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.54 E-value=8.5e-05 Score=60.26 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHh
Q 040726 87 RGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH 131 (375)
Q Consensus 87 kg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~ 131 (375)
...||+||.++..+.+..||++|..|+..|++||..+|...|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 458999999999999999999999999999999999999998754
No 79
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=6.2e-05 Score=56.61 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=43.1
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCccccccchhhhhhh
Q 040726 29 KVGLKRGPWTPEEDELLANYINKEGEGRWRTLPK-RAGLLRCGKSCRLRWMN 79 (375)
Q Consensus 29 k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~-~~~~~Rt~~QCr~Rw~~ 79 (375)
.|.++...||+||-++..+++.+||. +|..|++ .++. |+..+|..-|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPN-KETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTT-SCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CcHHHHHHHHhc
Confidence 45677789999999999999999994 9999998 5887 999999987754
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.48 E-value=0.00014 Score=55.86 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=41.0
Q ss_pred CCCCChHHHHHHHHHHHHhCCcchhhcc-cCCCCCHHHHHHHHHH
Q 040726 87 RGHIAPDEEDLILRLHRLLGNRWSLIAG-RIPGRTDNEIKNYWNT 130 (375)
Q Consensus 87 kg~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~qcrnRW~~ 130 (375)
...||+||-.+..+++.+||.+|..|++ .|++||..+|...|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5999999999999974
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.26 E-value=9.8e-05 Score=59.89 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=42.6
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccC----ccccccchhhhhhhcc
Q 040726 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAG----LLRCGKSCRLRWMNYL 81 (375)
Q Consensus 32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~----~~Rt~~QCr~Rw~~~L 81 (375)
++..+||.||+..|.+|+++|+ ..|..|+..+. ..|+..++++||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999999 59999999983 2399999999998754
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.22 E-value=0.00013 Score=74.78 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=43.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhc
Q 040726 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNY 80 (375)
Q Consensus 32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~ 80 (375)
....+||.||-+++++++.+|| .+|..||+.+++ |+..||+..|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgT-KT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSS-CCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3467999999999999999999 599999999998 9999999998765
No 83
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=97.01 E-value=0.0001 Score=73.23 Aligned_cols=17 Identities=6% Similarity=-0.177 Sum_probs=8.6
Q ss_pred CCCChHHHHHHHHHHHH
Q 040726 88 GHIAPDEEDLILRLHRL 104 (375)
Q Consensus 88 g~WT~EED~~Ll~lv~~ 104 (375)
-+||-+|-..+.+.+++
T Consensus 125 ~P~Twdel~~~a~~l~~ 141 (449)
T 3iot_A 125 PPKTWEEIPALDKELKA 141 (449)
T ss_dssp CCSBGGGHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 45565555554444443
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.87 E-value=0.00059 Score=53.83 Aligned_cols=49 Identities=16% Similarity=0.406 Sum_probs=40.4
Q ss_pred CCCCCChHHHHHHHHHHHHhC----------CcchhhcccCC----CCCHHHHHHHHHHhhhh
Q 040726 86 KRGHIAPDEEDLILRLHRLLG----------NRWSLIAGRIP----GRTDNEIKNYWNTHLSK 134 (375)
Q Consensus 86 kkg~WT~EED~~Ll~lv~~~G----------~kW~~IA~~lp----gRT~~qcrnRW~~~L~~ 134 (375)
+...||.+|..+||.++..+. ..|..||..|. .||+.||+.+|.++.+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 356899999999999997632 14999999973 69999999999986644
No 85
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=96.82 E-value=0.00026 Score=70.33 Aligned_cols=25 Identities=32% Similarity=0.190 Sum_probs=14.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhC
Q 040726 29 KVGLKRGPWTPEEDELLANYINKEG 53 (375)
Q Consensus 29 k~~~kkg~WT~EED~~L~~lV~k~g 53 (375)
|.-+++-+||-+|=..+.+.+++-|
T Consensus 119 kdl~~~~P~Twdel~~~a~~l~~~g 143 (449)
T 3iot_A 119 KDLLPNPPKTWEEIPALDKELKAKG 143 (449)
T ss_dssp TTTCSSCCSBGGGHHHHHHHHHTTT
T ss_pred hHHhccCCCCHHHHHHHHHHHHhCC
Confidence 3344456777777665555555433
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.77 E-value=0.00052 Score=55.57 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=39.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhh
Q 040726 34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMN 79 (375)
Q Consensus 34 kg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~ 79 (375)
...||+||.++..+++..|| .+|..|++.++. |+..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~-Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCC-CCHHHHHHHHhc
Confidence 45799999999999999999 599999999998 999999987754
No 87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.67 E-value=0.00077 Score=51.64 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=39.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCccccccchhhhhhh
Q 040726 33 KRGPWTPEEDELLANYINKEGEGRWRTLPK-RAGLLRCGKSCRLRWMN 79 (375)
Q Consensus 33 kkg~WT~EED~~L~~lV~k~g~~~W~~IA~-~~~~~Rt~~QCr~Rw~~ 79 (375)
....||+||-++..+++.+||. +|..|++ .+++ |+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 4457999999999999999995 9999999 5887 999999987754
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.62 E-value=0.00022 Score=56.35 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=39.4
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---------CCccccccccC---ccccccchhhhhhhcc
Q 040726 33 KRGPWTPEEDELLANYINKEGE---------GRWRTLPKRAG---LLRCGKSCRLRWMNYL 81 (375)
Q Consensus 33 kkg~WT~EED~~L~~lV~k~g~---------~~W~~IA~~~~---~~Rt~~QCr~Rw~~~L 81 (375)
+...||.+|...|+.+...+.. ..|..||..|. ..|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999876421 15999999874 3499999999998864
No 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.31 E-value=0.0072 Score=60.05 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=75.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhh-------hhhhc---------------------------
Q 040726 35 GPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRL-------RWMNY--------------------------- 80 (375)
Q Consensus 35 g~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~-------Rw~~~--------------------------- 80 (375)
+.||.-|=..++.++.+||..+-..||..|+++++...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999899999999972277665551 11111
Q ss_pred -------------c----CCC-CCCCCCChHHHHHHHHHHHHhC----Ccchhhccc------------CCCCCHHHHHH
Q 040726 81 -------------L----RPS-VKRGHIAPDEEDLILRLHRLLG----NRWSLIAGR------------IPGRTDNEIKN 126 (375)
Q Consensus 81 -------------L----~p~-lkkg~WT~EED~~Ll~lv~~~G----~kW~~IA~~------------lpgRT~~qcrn 126 (375)
| .+. .++..||.+||..|+-++.+|| +.|..|-.. |..||...|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 011 1345799999999999999999 459888332 35699999999
Q ss_pred HHHHhhhh
Q 040726 127 YWNTHLSK 134 (375)
Q Consensus 127 RW~~~L~~ 134 (375)
|...+|+-
T Consensus 284 Rc~tLi~~ 291 (374)
T 2y9y_A 284 RGNTLLQC 291 (374)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998854
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.85 E-value=0.006 Score=55.32 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHHHHHhC-CcchhhcccC--------------CCCCHHHHHHHHHHhhh
Q 040726 89 HIAPDEEDLILRLHRLLG-NRWSLIAGRI--------------PGRTDNEIKNYWNTHLS 133 (375)
Q Consensus 89 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~l--------------pgRT~~qcrnRW~~~L~ 133 (375)
.||.+||..|+..+.+|| ++|..|.... ..++...+..|...+|+
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 599999999999999999 8998875421 12567788888765553
No 91
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.81 E-value=0.0015 Score=49.85 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCccccccccCccccccchhhhhhhccC
Q 040726 35 GPWTPEEDELLANYINKEGE--GRWRTLPKRAGLLRCGKSCRLRWMNYLR 82 (375)
Q Consensus 35 g~WT~EED~~L~~lV~k~g~--~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~ 82 (375)
-.||.|||..|+..+++-|. .-|..||+.+ + |++.|+.+||...+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK 62 (70)
Confidence 46999999999999998885 3699999998 4 999999999987653
No 92
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.52 E-value=0.0059 Score=49.05 Aligned_cols=44 Identities=16% Similarity=0.354 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCccccccccCccccccchhhhhhh
Q 040726 35 GPWTPEEDELLANYINKEGE--GRWRTLPKRAGLLRCGKSCRLRWMN 79 (375)
Q Consensus 35 g~WT~EED~~L~~lV~k~g~--~~W~~IA~~~~~~Rt~~QCr~Rw~~ 79 (375)
-.||.|||..|+...++.|. .-|..||+.++. |+..|+.+||+.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~ 79 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE 79 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence 36999999999999999875 469999999987 999999999975
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.71 E-value=0.013 Score=47.36 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=41.6
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccC----ccccccchhhhhhhcc
Q 040726 32 LKRGPWTPEEDELLANYINKEGEGRWRTLPKRAG----LLRCGKSCRLRWMNYL 81 (375)
Q Consensus 32 ~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~----~~Rt~~QCr~Rw~~~L 81 (375)
++...||.||...|.+|+++|. -.|..|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 4456899999999999999999 59999998874 2389999999998764
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.86 E-value=0.085 Score=39.75 Aligned_cols=48 Identities=13% Similarity=-0.008 Sum_probs=40.7
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCc---chhhcccC--CCCCHHHHHHHHHHhh
Q 040726 85 VKRGHIAPDEEDLILRLHRLLGNR---WSLIAGRI--PGRTDNEIKNYWNTHL 132 (375)
Q Consensus 85 lkkg~WT~EED~~Ll~lv~~~G~k---W~~IA~~l--pgRT~~qcrnRW~~~L 132 (375)
..+-.||+|..+..+++|.++|.. |..|-+.| +|.|..+|+.|...|.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999954 77888876 7899999999887654
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.47 E-value=0.093 Score=47.32 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=29.4
Q ss_pred cCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 040726 27 CSKVGLKRGPWTPEEDELLANYINKEGEGRWRTLPK 62 (375)
Q Consensus 27 c~k~~~kkg~WT~EED~~L~~lV~k~g~~~W~~IA~ 62 (375)
+.++......||.+||..|+..|.+||.++|..|-.
T Consensus 127 ~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 127 HTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 334444455799999999999999999999999954
No 96
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=90.18 E-value=0.4 Score=46.37 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=40.2
Q ss_pred CCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhh
Q 040726 87 RGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHL 132 (375)
Q Consensus 87 kg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L 132 (375)
-+.||..+...++.++.+|| ..|..||..|+|+|...|+.++....
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw 156 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW 156 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 35799999999999999999 57999999999999999977665444
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.15 E-value=0.18 Score=48.07 Aligned_cols=28 Identities=39% Similarity=0.622 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 040726 35 GPWTPEEDELLANYINKEGEGRWRTLPK 62 (375)
Q Consensus 35 g~WT~EED~~L~~lV~k~g~~~W~~IA~ 62 (375)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999999999954
No 98
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=80.29 E-value=1 Score=33.76 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=34.9
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCC---ccccccccCc-cccccchhhhhhh
Q 040726 32 LKRGPWTPEEDELLANYINKEGEGR---WRTLPKRAGL-LRCGKSCRLRWMN 79 (375)
Q Consensus 32 ~kkg~WT~EED~~L~~lV~k~g~~~---W~~IA~~~~~-~Rt~~QCr~Rw~~ 79 (375)
..+-.||+|.-++.+++|...|. + +..|-+.|+. +.|..++.-|...
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 35678999999999999999994 4 6678777653 1566677655443
No 99
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=69.23 E-value=1.5 Score=43.53 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=27.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---CCcccccccc
Q 040726 33 KRGPWTPEEDELLANYINKEGE---GRWRTLPKRA 64 (375)
Q Consensus 33 kkg~WT~EED~~L~~lV~k~g~---~~W~~IA~~~ 64 (375)
++..||.+||..|+-++.+||. +.|..|-..+
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I 261 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEI 261 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4567999999999999999999 8999995544
No 100
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=68.79 E-value=6.9 Score=37.07 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=41.0
Q ss_pred CCCCChHHHHHHHHHHHHhC---Ccchhhccc--CCCCCHHHHHHHHHHhhhh
Q 040726 87 RGHIAPDEEDLILRLHRLLG---NRWSLIAGR--IPGRTDNEIKNYWNTHLSK 134 (375)
Q Consensus 87 kg~WT~EED~~Ll~lv~~~G---~kW~~IA~~--lpgRT~~qcrnRW~~~L~~ 134 (375)
++.||..|-..|++.+.+|| .+|..|+.. |+.++...++.-|..++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 589999655 7899999998888766643
No 101
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=54.62 E-value=3.3 Score=34.64 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=39.7
Q ss_pred HHHHHHHHhCC-------CCccccccccCccccc----cchhhhhhhccCCCCCCCCCChHHHHHHHHHHHH
Q 040726 44 LLANYINKEGE-------GRWRTLPKRAGLLRCG----KSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRL 104 (375)
Q Consensus 44 ~L~~lV~k~g~-------~~W~~IA~~~~~~Rt~----~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~ 104 (375)
+|-.+|.+.|. +.|..|+..|+...+. ...+..|.++|.|-- ..+++|-..|..-|..
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~~ 114 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVLM 114 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHHH
Confidence 34455555553 4799999999764332 466788999887632 3788888888877653
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=49.67 E-value=7.6 Score=31.81 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=30.5
Q ss_pred HHHHHHHHhCC--------cchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726 97 LILRLHRLLGN--------RWSLIAGRIPGRTDNEIKNYWNTHLSK 134 (375)
Q Consensus 97 ~Ll~lv~~~G~--------kW~~IA~~lpgRT~~qcrnRW~~~L~~ 134 (375)
+|..+|.+.|+ .|..|+..|.--....+|..|..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 48888888873 699999998444478999999988865
No 103
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=48.09 E-value=17 Score=29.02 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC--------cchhhcccCCCCC----HHHHHHHHHHhhhh
Q 040726 97 LILRLHRLLGN--------RWSLIAGRIPGRT----DNEIKNYWNTHLSK 134 (375)
Q Consensus 97 ~Ll~lv~~~G~--------kW~~IA~~lpgRT----~~qcrnRW~~~L~~ 134 (375)
+|..+|.+.|+ .|..|+..|.--. ...+|..|..+|-+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 47777777773 6999999993322 56889999988865
No 104
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=47.97 E-value=16 Score=30.00 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=29.2
Q ss_pred HHHHHHHHhCC--------cchhhcccCCCCC----HHHHHHHHHHhhhh
Q 040726 97 LILRLHRLLGN--------RWSLIAGRIPGRT----DNEIKNYWNTHLSK 134 (375)
Q Consensus 97 ~Ll~lv~~~G~--------kW~~IA~~lpgRT----~~qcrnRW~~~L~~ 134 (375)
+|..+|.+.|+ .|..|+..|.--. ...+|..|..+|-+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57888888873 6999999983322 56889999988866
No 105
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=47.63 E-value=15 Score=32.42 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=19.3
Q ss_pred CCCCcCCCCHHHHHHHH--------HHHHHhC
Q 040726 30 VGLKRGPWTPEEDELLA--------NYINKEG 53 (375)
Q Consensus 30 ~~~kkg~WT~EED~~L~--------~lV~k~g 53 (375)
|.-.+|-||+|+|+.|+ +|++|||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 34568999999999985 6778887
No 106
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.04 E-value=4.8 Score=33.03 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=30.6
Q ss_pred HHHHHHHHhCC-------CCccccccccCccccccchhhhhhhccCC
Q 040726 44 LLANYINKEGE-------GRWRTLPKRAGLLRCGKSCRLRWMNYLRP 83 (375)
Q Consensus 44 ~L~~lV~k~g~-------~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p 83 (375)
+|-.+|.+.|. +.|..|+..|+. -.+..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 57777888864 479999999987 4477888888888764
No 107
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=44.81 E-value=10 Score=31.49 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=30.1
Q ss_pred HHHHHHHHhCC--------cchhhcccCCCCCHHHHHHHHHHhhhhH
Q 040726 97 LILRLHRLLGN--------RWSLIAGRIPGRTDNEIKNYWNTHLSKK 135 (375)
Q Consensus 97 ~Ll~lv~~~G~--------kW~~IA~~lpgRT~~qcrnRW~~~L~~~ 135 (375)
+|..+|.+.|+ .|..|+..|.--....+|..|..+|-+-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 46677777663 5999999984444899999999999763
No 108
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=43.70 E-value=20 Score=29.66 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC--------cchhhcccCCCCC----HHHHHHHHHHhhhh
Q 040726 97 LILRLHRLLGN--------RWSLIAGRIPGRT----DNEIKNYWNTHLSK 134 (375)
Q Consensus 97 ~Ll~lv~~~G~--------kW~~IA~~lpgRT----~~qcrnRW~~~L~~ 134 (375)
+|..+|.+.|+ .|..|+..|.--+ ...+|..|..+|-+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47777888773 6999999983322 46889999998866
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=42.45 E-value=21 Score=29.44 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC--------cchhhcccCCCC--C--HHHHHHHHHHhhhh
Q 040726 97 LILRLHRLLGN--------RWSLIAGRIPGR--T--DNEIKNYWNTHLSK 134 (375)
Q Consensus 97 ~Ll~lv~~~G~--------kW~~IA~~lpgR--T--~~qcrnRW~~~L~~ 134 (375)
+|..+|.+.|+ +|..|+..|.-. + ...+|..|..+|-+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 47778888773 699999998332 1 46889999988866
No 110
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=41.06 E-value=21 Score=25.07 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhh
Q 040726 90 IAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHL 132 (375)
Q Consensus 90 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L 132 (375)
++ +.+..++.++-..|-.+.+||..| |-+...|+.+....+
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARAR 56 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 44 444556666667788999999999 889999988876655
No 111
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=37.29 E-value=26 Score=25.32 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHH----hCCcchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726 93 DEEDLILRLHRL----LGNRWSLIAGRIPGRTDNEIKNYWNTHLSK 134 (375)
Q Consensus 93 EED~~Ll~lv~~----~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~ 134 (375)
+.+..++.+.-. .|-.|.+||..| |-+...|+.+....+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 334445555444 567899999999 89999999987766533
No 112
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=37.23 E-value=9.7 Score=30.60 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC-------CCccccccccCccc----cccchhhhhhhccCC
Q 040726 44 LLANYINKEGE-------GRWRTLPKRAGLLR----CGKSCRLRWMNYLRP 83 (375)
Q Consensus 44 ~L~~lV~k~g~-------~~W~~IA~~~~~~R----t~~QCr~Rw~~~L~p 83 (375)
+|-.+|.+.|. +.|..|+..|+... .+..++..|.++|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777763 47999999987533 235678888888875
No 113
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=36.88 E-value=30 Score=26.19 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhh
Q 040726 94 EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHL 132 (375)
Q Consensus 94 ED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L 132 (375)
.+..++.++-..|-.-..||..| |-+...|+.|....+
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~ 78 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 44456666666678899999999 888999988876544
No 114
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=34.72 E-value=35 Score=28.23 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCC--------cchhhcccCC--CC---CHHHHHHHHHHhhhh
Q 040726 96 DLILRLHRLLGN--------RWSLIAGRIP--GR---TDNEIKNYWNTHLSK 134 (375)
Q Consensus 96 ~~Ll~lv~~~G~--------kW~~IA~~lp--gR---T~~qcrnRW~~~L~~ 134 (375)
-+|..+|.+.|+ .|..|+..|. .. ....+|..|..+|-+
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 457888888883 6999999982 22 257889999999866
No 115
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=34.52 E-value=31 Score=29.26 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=29.2
Q ss_pred HHHHHHHHhCC--------cchhhcccCC--CC---CHHHHHHHHHHhhhh
Q 040726 97 LILRLHRLLGN--------RWSLIAGRIP--GR---TDNEIKNYWNTHLSK 134 (375)
Q Consensus 97 ~Ll~lv~~~G~--------kW~~IA~~lp--gR---T~~qcrnRW~~~L~~ 134 (375)
+|..+|.+.|+ .|..|+..|. .. ....+|..|..+|-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 47778888873 6999999983 22 256899999999866
No 116
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=33.80 E-value=15 Score=28.70 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=27.5
Q ss_pred HHHHHHHHhC--------CcchhhcccCCCC----CHHHHHHHHHHhhhh
Q 040726 97 LILRLHRLLG--------NRWSLIAGRIPGR----TDNEIKNYWNTHLSK 134 (375)
Q Consensus 97 ~Ll~lv~~~G--------~kW~~IA~~lpgR----T~~qcrnRW~~~L~~ 134 (375)
+|..+|.+.| +.|.+|+..|.-- ....+|..|..+|-+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 4777777776 3699999998321 256888888887754
No 117
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=33.61 E-value=29 Score=28.78 Aligned_cols=75 Identities=17% Similarity=0.303 Sum_probs=47.8
Q ss_pred cCCCCHHHH--HHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHHHHHHhCC----
Q 040726 34 RGPWTPEED--ELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGN---- 107 (375)
Q Consensus 34 kg~WT~EED--~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~---- 107 (375)
+.+|.+.+. +.|.+.+...|. ....|.. +++ |.- + --+|..+|.+.|+
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~g-k~l-----------D------------L~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IGG-CEL-----------D------------LACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ETT-EEC-----------C------------HHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CCC-Eec-----------c------------HHHHHHHHHHcCcHHHh
Confidence 457987775 456666777774 4444433 222 211 1 1247788888883
Q ss_pred ----cchhhcccC--CCC---CHHHHHHHHHHhhhh
Q 040726 108 ----RWSLIAGRI--PGR---TDNEIKNYWNTHLSK 134 (375)
Q Consensus 108 ----kW~~IA~~l--pgR---T~~qcrnRW~~~L~~ 134 (375)
.|..|+..| |.- ....+|..|..+|-+
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 699999998 322 246889999888855
No 118
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=32.16 E-value=16 Score=29.99 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccc---ccchhhhhhhccCC
Q 040726 44 LLANYINKEGE-------GRWRTLPKRAGLLRC---GKSCRLRWMNYLRP 83 (375)
Q Consensus 44 ~L~~lV~k~g~-------~~W~~IA~~~~~~Rt---~~QCr~Rw~~~L~p 83 (375)
+|-.+|.+.|. +.|..|+..|+...+ +...+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57778888873 479999999876332 34567777777753
No 119
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=31.18 E-value=29 Score=24.69 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=29.0
Q ss_pred HHHHHHHHHH----HhCCcchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726 94 EEDLILRLHR----LLGNRWSLIAGRIPGRTDNEIKNYWNTHLSK 134 (375)
Q Consensus 94 ED~~Ll~lv~----~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~ 134 (375)
.+..++.+.- ..|-.+.+||..| |-+...|+.+....+++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3444444443 2467899999999 89999999988766633
No 120
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=30.95 E-value=16 Score=30.40 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccc----ccchhhhhhhccCC
Q 040726 44 LLANYINKEGE-------GRWRTLPKRAGLLRC----GKSCRLRWMNYLRP 83 (375)
Q Consensus 44 ~L~~lV~k~g~-------~~W~~IA~~~~~~Rt----~~QCr~Rw~~~L~p 83 (375)
+|-.+|.+.|. +.|..|+..|+...+ +..++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777888774 479999999876332 34667778887754
No 121
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=28.30 E-value=18 Score=29.88 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=25.7
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccc---ccchhhhhhhccC
Q 040726 44 LLANYINKEGE-------GRWRTLPKRAGLLRC---GKSCRLRWMNYLR 82 (375)
Q Consensus 44 ~L~~lV~k~g~-------~~W~~IA~~~~~~Rt---~~QCr~Rw~~~L~ 82 (375)
+|-.+|.+.|. +.|..|+..|+...+ +..++..|.++|.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~ 103 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLF 103 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 56667777763 479999998876331 3455666776664
No 122
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=27.69 E-value=10 Score=29.86 Aligned_cols=46 Identities=22% Similarity=0.459 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCccccccccCccccccchhhhhhhccCCCC-------CCCCCChHHHHHHHH
Q 040726 42 DELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSV-------KRGHIAPDEEDLILR 100 (375)
Q Consensus 42 D~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~l-------kkg~WT~EED~~Ll~ 100 (375)
+.+|.+||..|| |..++..+.. .|.. .+|.+ +|.+|..+.-+.|.-
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I-----~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lYL 70 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNI-----NCFK-----KDPSIKSSLKFLRKTDWARERVENIYL 70 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTS-----SSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhccc-----ccCC-----CCCchHHHHHHHhcCHhHHHHHHHHHH
Confidence 578999999998 9999887765 3322 34543 478898887766654
No 123
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.56 E-value=23 Score=29.17 Aligned_cols=39 Identities=21% Similarity=0.463 Sum_probs=26.1
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccc---ccchhhhhhhccC
Q 040726 44 LLANYINKEGE-------GRWRTLPKRAGLLRC---GKSCRLRWMNYLR 82 (375)
Q Consensus 44 ~L~~lV~k~g~-------~~W~~IA~~~~~~Rt---~~QCr~Rw~~~L~ 82 (375)
+|-.+|.+.|. +.|..|+..|+...+ +...+..|.++|.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 57777888864 479999999876332 2355666666653
No 124
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=25.41 E-value=30 Score=29.55 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=27.3
Q ss_pred cccccccCccccccchhhhhhhccCCCCCCCCCChHHHHHHHH
Q 040726 58 RTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILR 100 (375)
Q Consensus 58 ~~IA~~~~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~ 100 (375)
..||..+.+ +++.+||..|. + ...||+||++.|.+
T Consensus 119 ~~vA~~ikg-kt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKG-KTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTT-CCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 567787877 99999999763 2 33699999988776
No 125
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=24.55 E-value=2.8e+02 Score=22.59 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccchhhhhhhc------cCCCCC----CCCCChHHHHHHHHHHH
Q 040726 34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNY------LRPSVK----RGHIAPDEEDLILRLHR 103 (375)
Q Consensus 34 kg~WT~EED~~L~~lV~k~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~------L~p~lk----kg~WT~EED~~Ll~lv~ 103 (375)
....|.++-..++.++. .| .....||+.++ .+... -.||.+. +.+... +...++++.+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~T-V~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGC-VSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHH-HHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHH-HHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34688888888888774 55 47789999887 33333 3344433 222211 23478888888888887
Q ss_pred HhC
Q 040726 104 LLG 106 (375)
Q Consensus 104 ~~G 106 (375)
+..
T Consensus 98 ~~~ 100 (159)
T 2k27_A 98 QNP 100 (159)
T ss_dssp HCS
T ss_pred HCc
Confidence 643
No 126
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=24.52 E-value=69 Score=26.53 Aligned_cols=28 Identities=18% Similarity=0.029 Sum_probs=22.9
Q ss_pred hCCcchhhcccCCCCCHHHHHHHHHHhhh
Q 040726 105 LGNRWSLIAGRIPGRTDNEIKNYWNTHLS 133 (375)
Q Consensus 105 ~G~kW~~IA~~lpgRT~~qcrnRW~~~L~ 133 (375)
.|-...+||..| |-+...|+.+....++
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~ 177 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALD 177 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 466789999999 8888999998876653
No 127
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.63 E-value=36 Score=28.66 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhhHHHh
Q 040726 93 DEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLSKKLIS 138 (375)
Q Consensus 93 EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcrnRW~~~L~~~l~~ 138 (375)
+-|.+|+.+..+-| -.|..||+.+ |-+...|+.|+..+....+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45778888888777 4699999999 999999999998877666543
No 128
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=22.55 E-value=80 Score=22.57 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726 90 IAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSK 134 (375)
Q Consensus 90 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~ 134 (375)
+|+.|-+.| .++ ..|-...+||..| |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455554444 445 6678899999999 88999999888765533
No 129
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=22.47 E-value=36 Score=28.91 Aligned_cols=40 Identities=28% Similarity=0.538 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccc----ccchhhhhhhccCC
Q 040726 44 LLANYINKEGE-------GRWRTLPKRAGLLRC----GKSCRLRWMNYLRP 83 (375)
Q Consensus 44 ~L~~lV~k~g~-------~~W~~IA~~~~~~Rt----~~QCr~Rw~~~L~p 83 (375)
+|..+|.+.|. +.|..|+..|+...+ +..++..|.++|-|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 56677777764 479999999876332 34677888888876
No 130
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.26 E-value=98 Score=23.59 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=34.9
Q ss_pred CCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhh
Q 040726 87 RGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSK 134 (375)
Q Consensus 87 kg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcrnRW~~~L~~ 134 (375)
....|+.|-+.|..++ .|..-.+||..| |-+...|+.+...++++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4467888877666554 788899999999 89999999998877644
Done!