Query 040727
Match_columns 231
No_of_seqs 120 out of 207
Neff 2.3
Searched_HMMs 46136
Date Fri Mar 29 11:09:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 3.9E-42 8.4E-47 325.2 7.6 97 118-214 1-111 (506)
2 PF14998 Ripply: Transcription 29.7 22 0.00048 28.3 0.5 18 150-167 35-54 (87)
3 PF13665 DUF4150: Domain of un 27.0 32 0.0007 27.5 1.1 17 145-163 10-26 (110)
4 PF05279 Asp-B-Hydro_N: Aspart 25.5 63 0.0014 29.5 2.7 27 7-34 16-56 (243)
5 PF14021 DUF4237: Protein of u 20.6 42 0.00091 26.0 0.6 8 191-198 65-72 (90)
6 TIGR03843 conserved hypothetic 20.3 62 0.0013 30.0 1.6 17 147-163 236-252 (253)
7 PF11776 DUF3315: Domain of un 17.5 65 0.0014 22.6 0.9 20 172-191 23-43 (52)
8 PF12503 CMV_1a_C: Cucumber mo 17.1 68 0.0015 25.6 1.0 14 188-201 33-46 (85)
9 PF12785 VESA1_N: Variant eryt 17.0 1.1E+02 0.0023 30.8 2.5 18 193-213 50-67 (462)
10 PF14982 UPF0731: UPF0731 fami 17.0 74 0.0016 25.0 1.2 20 93-112 12-33 (79)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=3.9e-42 Score=325.16 Aligned_cols=97 Identities=40% Similarity=0.677 Sum_probs=92.7
Q ss_pred ccccccchhHhhh-----hccchhhccCC--CCCCcccccCCCCCCCCCCCCCcccceeee------eeec-cccCeeEE
Q 040727 118 ESEKSLDENKWMR-----LHYEHRERYCP--EEACTCIAPLPEGYKRLIKWPKAGIGFVLM------LCGI-DLRNGVKV 183 (231)
Q Consensus 118 ~~~pClDp~R~~r-----~~~ehRERHCP--eE~l~CLVPpP~GYK~PIrWPkSRDkIWys------Lae~-~~QNWV~v 183 (231)
|+.||+|++|+++ ++++||||||| +++++||||+|+|||+|||||+|||+|||+ |+++ ++||||++
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 6899999998875 68999999999 589999999999999999999999999999 8877 99999999
Q ss_pred eCcEEEcCCCCCCCcCcHHHHHHHHHHHHhh
Q 040727 184 TGEYLIFPGGRTQFENGALHYIDFILKLQLI 214 (231)
Q Consensus 184 eGD~f~FPGGGTqFp~GAd~YIDqIaeMIgl 214 (231)
+||+|+|||||||||+||++|||+|++|+++
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~ 111 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPL 111 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999998
No 2
>PF14998 Ripply: Transcription Regulator
Probab=29.74 E-value=22 Score=28.25 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=13.9
Q ss_pred cCCCCCCCCCC--CCCcccc
Q 040727 150 PLPEGYKRLIK--WPKAGIG 167 (231)
Q Consensus 150 PpP~GYK~PIr--WPkSRDk 167 (231)
..+.+|+-||| ||+||-+
T Consensus 35 ~~~~~FqHPVRL~wPkSk~~ 54 (87)
T PF14998_consen 35 KGLSGFQHPVRLYWPKSKCY 54 (87)
T ss_pred CcccccCCceEeeccchHHH
Confidence 34568999998 9999753
No 3
>PF13665 DUF4150: Domain of unknown function (DUF4150)
Probab=27.01 E-value=32 Score=27.46 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.6
Q ss_pred CcccccCCCCCCCCCCCCC
Q 040727 145 CTCIAPLPEGYKRLIKWPK 163 (231)
Q Consensus 145 l~CLVPpP~GYK~PIrWPk 163 (231)
--|+.|+|+. +|||.|-
T Consensus 10 DVC~TP~~~~--vPIPYpn 26 (110)
T PF13665_consen 10 DVCKTPPGPP--VPIPYPN 26 (110)
T ss_pred cceeCCCCCC--ccCcccc
Confidence 3699999887 9999985
No 4
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=25.49 E-value=63 Score=29.46 Aligned_cols=27 Identities=41% Similarity=0.725 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHhhc--------------ceeeecCCCCCCc
Q 040727 7 FVGLFLVGVWMLMSS--------------SVVLDSTNGDGDD 34 (231)
Q Consensus 7 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 34 (231)
|+-|.|+|||..|.- -++.| +.||||.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~iYD-aDGDGDF 56 (243)
T PF05279_consen 16 FLVLALLGVWSSVAVVMFDLVDYKSVLGKLGIYD-ADGDGDF 56 (243)
T ss_pred HHHHHHHHHHHhhHhhheehhhHHHHhhhheeee-ccCCCcc
Confidence 566778899965431 23344 7888873
No 5
>PF14021 DUF4237: Protein of unknown function (DUF4237)
Probab=20.55 E-value=42 Score=25.99 Aligned_cols=8 Identities=63% Similarity=1.302 Sum_probs=7.2
Q ss_pred CCCCCCCc
Q 040727 191 PGGRTQFE 198 (231)
Q Consensus 191 PGGGTqFp 198 (231)
||||+||.
T Consensus 65 pGGG~Qy~ 72 (90)
T PF14021_consen 65 PGGGTQYK 72 (90)
T ss_pred CCCeEEEE
Confidence 99999994
No 6
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=20.26 E-value=62 Score=30.01 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=14.5
Q ss_pred ccccCCCCCCCCCCCCC
Q 040727 147 CIAPLPEGYKRLIKWPK 163 (231)
Q Consensus 147 CLVPpP~GYK~PIrWPk 163 (231)
=..|.|.|=+++||||-
T Consensus 236 ~~~P~P~~~~p~iPWP~ 252 (253)
T TIGR03843 236 GVFPAPSGHWPAIPWPP 252 (253)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 35799999999999994
No 7
>PF11776 DUF3315: Domain of unknown function (DUF3315); InterPro: IPR024572 This is a bacterial family of uncharacterised proteins, which include YohN from Escherichia coli K12.; PDB: 2L1S_A.
Probab=17.47 E-value=65 Score=22.58 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=12.4
Q ss_pred eeec-cccCeeEEeCcEEEcC
Q 040727 172 LCGI-DLRNGVKVTGEYLIFP 191 (231)
Q Consensus 172 Lae~-~~QNWV~veGD~f~FP 191 (231)
|-.- .++.|+++.||++..-
T Consensus 23 L~~Pp~G~~Wvrv~~dyvLv~ 43 (52)
T PF11776_consen 23 LPAPPRGYHWVRVGGDYVLVA 43 (52)
T ss_dssp -----TTEEEEE-SSEEEEEE
T ss_pred CCcCCCCCEeEEECCeEEEEE
Confidence 5444 5688999999998764
No 8
>PF12503 CMV_1a_C: Cucumber mosaic virus 1a protein C terminal ; InterPro: IPR022184 This domain family is found in viruses, and is approximately 90 amino acids in length. The family is found in association with PF01443 from PFAM, PF01660 from PFAM. There is a conserved GLG sequence motif. 1a protein is the major virulence factor of the (Cucumber mosaic virus. The Ns strain of CMV causes necrotic lesions to Nicotiana spp. while other strains cause systemic mosaic. The determinant of the pathogenesis of these different strains is the specific amino acid residue at the 461 residue of the 1a protein. ; GO: 0008168 methyltransferase activity, 0016817 hydrolase activity, acting on acid anhydrides
Probab=17.14 E-value=68 Score=25.63 Aligned_cols=14 Identities=36% Similarity=0.745 Sum_probs=11.9
Q ss_pred EEcCCCCCCCcCcH
Q 040727 188 LIFPGGRTQFENGA 201 (231)
Q Consensus 188 f~FPGGGTqFp~GA 201 (231)
+-||+|+.|+|+|.
T Consensus 33 vHf~~GrWm~P~~~ 46 (85)
T PF12503_consen 33 VHFPNGRWMYPEGY 46 (85)
T ss_pred EEecCCceecCCCe
Confidence 45999999999885
No 9
>PF12785 VESA1_N: Variant erythrocyte surface antigen-1; InterPro: IPR024751 This entry represents variant erythrocyte surface antigen 1, versions a and b, of Babesia. Babesia bovis is a tick-borne, intra-erythrocytic, protozoal parasite of cattle that shares many lifestyle parallels with the most virulent of the human malarial parasites, Plasmodium falciparum. Babesia uses antigenic variation to establish consistent infections of long duration. The two variants of VESA1, a and b, are expressed from different but closely related genes, and variation is achieved through the involvement of a segmental gene conversion mechanism and low-frequency epigenetic in situ switching of transcriptional activity from the VESA1 gene-pair to a possible other gene pair [].
Probab=17.00 E-value=1.1e+02 Score=30.78 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=14.6
Q ss_pred CCCCCcCcHHHHHHHHHHHHh
Q 040727 193 GRTQFENGALHYIDFILKLQL 213 (231)
Q Consensus 193 GGTqFp~GAd~YIDqIaeMIg 213 (231)
|||.. |..|||||++.+.
T Consensus 50 ggtav---vrtyidqlaqvLs 67 (462)
T PF12785_consen 50 GGTAV---VRTYIDQLAQVLS 67 (462)
T ss_pred CCcee---HHHHHHHHHHHHH
Confidence 67766 7899999998764
No 10
>PF14982 UPF0731: UPF0731 family
Probab=16.98 E-value=74 Score=25.04 Aligned_cols=20 Identities=45% Similarity=0.757 Sum_probs=12.0
Q ss_pred hhccCCC--cccccccCCCccc
Q 040727 93 KIEGGDS--NLEAGETEGSESN 112 (231)
Q Consensus 93 ~ie~g~~--~~ea~~~~~~~~n 112 (231)
-|||||| |+|.|-++....|
T Consensus 12 PvEgGDS~i~~e~GLsssaa~~ 33 (79)
T PF14982_consen 12 PVEGGDSSIGLEPGLSSSAACN 33 (79)
T ss_pred ccccCccccccCcccccchhcc
Confidence 4899999 4455544443334
Done!