Query 040727
Match_columns 231
No_of_seqs 120 out of 207
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 18:03:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jui_A PLNE; ampiphilic alpha 82.8 0.51 1.7E-05 30.6 1.5 31 190-220 1-31 (33)
2 2h1y_A Malonyl coenzyme A-acyl 33.6 34 0.0011 29.5 3.6 13 187-199 16-28 (321)
3 4fle_A Esterase; structural ge 31.8 20 0.00067 26.1 1.6 29 186-215 164-192 (202)
4 2oa2_A BH2720 protein; 1017534 29.7 74 0.0025 23.3 4.5 49 148-196 47-106 (148)
5 2o8q_A Hypothetical protein; c 25.6 48 0.0016 23.5 2.8 46 151-196 50-101 (134)
6 1v70_A Probable antibiotics sy 21.8 48 0.0016 21.5 2.0 48 149-196 33-85 (105)
7 3s8f_C Cytochrome C oxidase po 21.5 28 0.00094 22.6 0.7 17 4-20 11-27 (34)
8 3h8u_A Uncharacterized conserv 19.2 1.2E+02 0.0042 20.9 3.8 50 147-196 42-97 (125)
9 3l2h_A Putative sugar phosphat 18.8 76 0.0026 23.4 2.7 45 149-193 51-101 (162)
10 2hg4_A DEBS, 6-deoxyerythronol 18.0 1.7E+02 0.006 28.8 5.8 18 187-204 554-572 (917)
No 1
>2jui_A PLNE; ampiphilic alpha helix, toxin; NMR {Lactobacillus plantarum}
Probab=82.78 E-value=0.51 Score=30.61 Aligned_cols=31 Identities=35% Similarity=0.403 Sum_probs=28.1
Q ss_pred cCCCCCCCcCcHHHHHHHHHHHHhhhhHHHH
Q 040727 190 FPGGRTQFENGALHYIDFILKLQLICGILFS 220 (231)
Q Consensus 190 FPGGGTqFp~GAd~YIDqIaeMIgl~~~~~~ 220 (231)
|--||-.|-..+.|-||.|....+|-|||-|
T Consensus 1 fnrggynfgksvrhvid~igsvagirgilks 31 (33)
T 2jui_A 1 FNRGGYNFGKSVRHVVDAIGSVAGIRGILKS 31 (33)
T ss_dssp CCSCSCCSSHHHHHHHHHHHHGGGTHHHHTT
T ss_pred CCccccccchhHHHHHHHHhhHHHHHHHHHh
Confidence 5678999999999999999999999999865
No 2
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT, transferase; 2.50A {Helicobacter pylori}
Probab=33.63 E-value=34 Score=29.46 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=11.8
Q ss_pred EEEcCCCCCCCcC
Q 040727 187 YLIFPGGRTQFEN 199 (231)
Q Consensus 187 ~f~FPGGGTqFp~ 199 (231)
-|+|||-|+|+++
T Consensus 16 afvFpGQGsQ~~g 28 (321)
T 2h1y_A 16 ALLFPGQGSQCIG 28 (321)
T ss_dssp EEEECCTTCCCTT
T ss_pred EEEECCcchhhhh
Confidence 4899999999987
No 3
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=31.78 E-value=20 Score=26.11 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=23.2
Q ss_pred cEEEcCCCCCCCcCcHHHHHHHHHHHHhhh
Q 040727 186 EYLIFPGGRTQFENGALHYIDFILKLQLIC 215 (231)
Q Consensus 186 D~f~FPGGGTqFp~GAd~YIDqIaeMIgl~ 215 (231)
..+++||||..|. .-++|++.|.+.+.+.
T Consensus 164 ~l~i~~g~~H~~~-~~~~~~~~I~~FL~~a 192 (202)
T 4fle_A 164 RQTVESGGNHAFV-GFDHYFSPIVTFLGLA 192 (202)
T ss_dssp EEEEESSCCTTCT-TGGGGHHHHHHHHTCC
T ss_pred EEEEECCCCcCCC-CHHHHHHHHHHHHhhh
Confidence 4678999999884 5678999998888764
No 4
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=29.70 E-value=74 Score=23.34 Aligned_cols=49 Identities=10% Similarity=0.060 Sum_probs=33.8
Q ss_pred cccCCCCCCCCCCCCCcccceeee----ee-eccccC------eeEEeCcEEEcCCCCCC
Q 040727 148 IAPLPEGYKRLIKWPKAGIGFVLM----LC-GIDLRN------GVKVTGEYLIFPGGRTQ 196 (231)
Q Consensus 148 LVPpP~GYK~PIrWPkSRDkIWys----La-e~~~QN------WV~veGD~f~FPGGGTq 196 (231)
++-.|+|...|..|-...++++|- +. ...++. +....||.+.||.|-.+
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H 106 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWH 106 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcE
Confidence 344566777787776556677777 22 225555 88889999999998544
No 5
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=25.61 E-value=48 Score=23.48 Aligned_cols=46 Identities=11% Similarity=0.019 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCCCcccceeee----ee-eccc-cCeeEEeCcEEEcCCCCCC
Q 040727 151 LPEGYKRLIKWPKAGIGFVLM----LC-GIDL-RNGVKVTGEYLIFPGGRTQ 196 (231)
Q Consensus 151 pP~GYK~PIrWPkSRDkIWys----La-e~~~-QNWV~veGD~f~FPGGGTq 196 (231)
+|+|...|..|=...++++|- +. ...+ +.+....||.++||.|-.+
T Consensus 50 ~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ip~g~~H 101 (134)
T 2o8q_A 50 PGKEAKPTWHTHTVGFQLFYVLRGWVEFEYEDIGAVMLEAGGSAFQPPGVRH 101 (134)
T ss_dssp C-----CCCEEECCSCEEEEEEESEEEEEETTTEEEEEETTCEEECCTTCCE
T ss_pred cCCCCCCCCEECCCCcEEEEEEeCEEEEEECCcEEEEecCCCEEEECCCCcE
Confidence 445666666664444677777 22 2255 7888899999999988544
No 6
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=21.84 E-value=48 Score=21.49 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=30.6
Q ss_pred ccCCCCCCCCCCCCCcccceeeee----e-eccccCeeEEeCcEEEcCCCCCC
Q 040727 149 APLPEGYKRLIKWPKAGIGFVLML----C-GIDLRNGVKVTGEYLIFPGGRTQ 196 (231)
Q Consensus 149 VPpP~GYK~PIrWPkSRDkIWysL----a-e~~~QNWV~veGD~f~FPGGGTq 196 (231)
+-.++|...|..|-...++++|-| . ...++.+....||.+.+|.|-.+
T Consensus 33 ~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H 85 (105)
T 1v70_A 33 YALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEEEALLAPGMAAFAPAGAPH 85 (105)
T ss_dssp EEECTTCEEEEECCSSCEEEEEEEESCEEEEETTEEEEECTTCEEEECTTSCE
T ss_pred EEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCcE
Confidence 334556666655543345566662 2 22677888889999999987543
No 7
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=21.45 E-value=28 Score=22.56 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=13.6
Q ss_pred EeehhHHHHHHHHHHhh
Q 040727 4 VVVFVGLFLVGVWMLMS 20 (231)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (231)
+|.++|+|++..|..+-
T Consensus 11 ~V~ilg~~I~i~W~~vf 27 (34)
T 3s8f_C 11 VILVLTLTILVFWLGVY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788999999997653
No 8
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=19.21 E-value=1.2e+02 Score=20.93 Aligned_cols=50 Identities=10% Similarity=-0.036 Sum_probs=34.4
Q ss_pred ccccCCCCCCCCCCCCCcccceeeee-----eec-cccCeeEEeCcEEEcCCCCCC
Q 040727 147 CIAPLPEGYKRLIKWPKAGIGFVLML-----CGI-DLRNGVKVTGEYLIFPGGRTQ 196 (231)
Q Consensus 147 CLVPpP~GYK~PIrWPkSRDkIWysL-----ae~-~~QNWV~veGD~f~FPGGGTq 196 (231)
.++-.|+|-..|..|-...+.++|-| ... .++......||.+.||.|-.+
T Consensus 42 ~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~i~~~~~H 97 (125)
T 3h8u_A 42 VVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAIAKPGQVH 97 (125)
T ss_dssp EEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTCEEEEETTEEEEECTTCCC
T ss_pred EEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCCEEEECCCCEE
Confidence 44555778888888877778888762 222 455566677999999988655
No 9
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=18.79 E-value=76 Score=23.41 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=31.7
Q ss_pred ccCCCCC-CCCCCCCCcccceeeee----e-eccccCeeEEeCcEEEcCCC
Q 040727 149 APLPEGY-KRLIKWPKAGIGFVLML----C-GIDLRNGVKVTGEYLIFPGG 193 (231)
Q Consensus 149 VPpP~GY-K~PIrWPkSRDkIWysL----a-e~~~QNWV~veGD~f~FPGG 193 (231)
+-.|+|- ..|..|=...++++|-| . ...++.+....||.+.||.|
T Consensus 51 ~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~i~i~~~ 101 (162)
T 3l2h_A 51 IQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQYPIAPGDFVGFPCH 101 (162)
T ss_dssp EEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTEEEEECTTCEEEECTT
T ss_pred EEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCEEEEeCCCCEEEECCC
Confidence 3345555 47777765678888883 2 22667778888999999987
No 10
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea}
Probab=18.05 E-value=1.7e+02 Score=28.81 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=13.9
Q ss_pred EEEcCCCCCCCcC-cHHHH
Q 040727 187 YLIFPGGRTQFEN-GALHY 204 (231)
Q Consensus 187 ~f~FPGGGTqFp~-GAd~Y 204 (231)
-|+|||-|+|+++ |.+=|
T Consensus 554 afvF~GQGsQ~~gMg~~L~ 572 (917)
T 2hg4_A 554 AMVFPGQGAQWQGMARDLL 572 (917)
T ss_dssp EEEECCTTSCCSSTTHHHH
T ss_pred eEEeCCCccccccchHHHH
Confidence 4899999999987 54433
Done!