Query 040727
Match_columns 231
No_of_seqs 120 out of 207
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 18:03:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040727.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040727hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qfma2 c.69.1.4 (A:431-710) P 40.3 14 0.001 25.8 3.9 27 186-212 241-267 (280)
2 d1nlta1 b.4.1.1 (A:110-138,A:2 24.1 18 0.0013 23.4 1.9 18 183-200 42-59 (74)
3 d1vpra1 b.60.1.7 (A:868-1218) 18.6 13 0.00097 31.7 0.4 36 149-187 134-170 (351)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 15.9 70 0.0051 18.9 3.2 23 200-222 4-27 (32)
5 d2axti1 f.23.37.1 (I:1-35) Pho 14.3 14 0.001 22.8 -0.5 12 4-15 12-23 (35)
6 d1c3ga1 b.4.1.1 (A:180-259) He 13.4 44 0.0032 21.4 1.9 18 183-200 47-64 (80)
7 d1xm8a_ d.157.1.2 (A:) Glyoxal 13.1 53 0.0039 25.4 2.7 34 181-214 126-159 (254)
8 d1v70a_ b.82.1.9 (A:) Hypothet 13.0 47 0.0035 21.0 2.0 48 149-196 33-85 (105)
9 d1vffa1 c.1.8.4 (A:1-423) Beta 12.2 16 0.0011 30.3 -0.9 25 189-213 76-100 (423)
10 d1o4ta_ b.82.1.9 (A:) Hypothet 11.1 40 0.0029 22.5 1.1 50 147-196 42-96 (115)
No 1
>d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=40.26 E-value=14 Score=25.82 Aligned_cols=27 Identities=4% Similarity=-0.122 Sum_probs=21.6
Q ss_pred cEEEcCCCCCCCcCcHHHHHHHHHHHH
Q 040727 186 EYLIFPGGRTQFENGALHYIDFILKLQ 212 (231)
Q Consensus 186 D~f~FPGGGTqFp~GAd~YIDqIaeMI 212 (231)
+.++|||+|.-|.....+-++++++|+
T Consensus 241 ~l~~~~~~gHgf~~~~~~~~~~~~~~~ 267 (280)
T d1qfma2 241 LIHVDTKAGHGAGKPTAKVIEEVSDMF 267 (280)
T ss_dssp EEEEESSCCSSTTCCHHHHHHHHHHHH
T ss_pred EEEEeCcCCCCCCCcHHHHHHHHHHHH
Confidence 468899999999778777777777664
No 2
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.14 E-value=18 Score=23.41 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=15.4
Q ss_pred EeCcEEEcCCCCCCCcCc
Q 040727 183 VTGEYLIFPGGRTQFENG 200 (231)
Q Consensus 183 veGD~f~FPGGGTqFp~G 200 (231)
.+|.+|+|+|.|-+.++|
T Consensus 42 ~~G~~ir~~g~G~~~~~~ 59 (74)
T d1nlta1 42 KDGQRIVFKGEADQAPDV 59 (74)
T ss_dssp CTTCEEEETTCSCCCTTC
T ss_pred cCCeEEEecCCcCCCCCC
Confidence 469999999999888765
No 3
>d1vpra1 b.60.1.7 (A:868-1218) Dinoflagellate luciferase {Lingulodinium polyedrum [TaxId: 160621]}
Probab=18.62 E-value=13 Score=31.70 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=23.6
Q ss_pred ccCCCCCCCCCCCCCcccceeee-eeeccccCeeEEeCcE
Q 040727 149 APLPEGYKRLIKWPKAGIGFVLM-LCGIDLRNGVKVTGEY 187 (231)
Q Consensus 149 VPpP~GYK~PIrWPkSRDkIWys-Lae~~~QNWV~veGD~ 187 (231)
.-+|-| |+|||..--.-=|- -..-.+.+||.++|.+
T Consensus 134 lklpcg---plpwpag~pepgyvpktnplhgrwitvsggq 170 (351)
T d1vpra1 134 LKLPCG---PLPWPAGLPEPGYVPKTNPLHGRWITVSGGQ 170 (351)
T ss_dssp SCCTTC---SCCBCTTCCCSCCCCSSCTTCEEEEEEESBH
T ss_pred ecccCC---CCCCCCCCCCCCccCCCCCccceEEEecCch
Confidence 445666 99999876554443 1222778999998754
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=15.88 E-value=70 Score=18.92 Aligned_cols=23 Identities=43% Similarity=0.710 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHHHhhh-hHHHHHH
Q 040727 200 GALHYIDFILKLQLIC-GILFSLY 222 (231)
Q Consensus 200 GAd~YIDqIaeMIgl~-~~~~~~~ 222 (231)
||--||-+|+-..+|. ||+|.+-
T Consensus 4 gavfyivfialffgiavgiifaik 27 (32)
T d2e74e1 4 GAVFYIVFIALFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHhhheeeEE
Confidence 7888999999888875 7777653
No 5
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.28 E-value=14 Score=22.80 Aligned_cols=12 Identities=50% Similarity=0.808 Sum_probs=9.1
Q ss_pred EeehhHHHHHHH
Q 040727 4 VVVFVGLFLVGV 15 (231)
Q Consensus 4 ~~~~~~~~~~~~ 15 (231)
|..||+||+.|.
T Consensus 12 V~fFv~lFiFGF 23 (35)
T d2axti1 12 VTFFVLLFVFGF 23 (35)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 456888888885
No 6
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.40 E-value=44 Score=21.43 Aligned_cols=18 Identities=6% Similarity=0.052 Sum_probs=14.8
Q ss_pred EeCcEEEcCCCCCCCcCc
Q 040727 183 VTGEYLIFPGGRTQFENG 200 (231)
Q Consensus 183 veGD~f~FPGGGTqFp~G 200 (231)
.+|++|+|+|-|-+-+++
T Consensus 47 ~~G~~i~~~g~G~~~~~~ 64 (80)
T d1c3ga1 47 KAGTKITYKNQGDYNPQT 64 (80)
T ss_dssp CTTCEEEESSCSSBCSSS
T ss_pred CCCcEEEECCccccCcCC
Confidence 469999999999887654
No 7
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=13.07 E-value=53 Score=25.38 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=29.4
Q ss_pred eEEeCcEEEcCCCCCCCcCcHHHHHHHHHHHHhh
Q 040727 181 VKVTGEYLIFPGGRTQFENGALHYIDFILKLQLI 214 (231)
Q Consensus 181 V~veGD~f~FPGGGTqFp~GAd~YIDqIaeMIgl 214 (231)
+.++||.|.--|-|.-|.+.+.++.+.|+++..|
T Consensus 126 ~lftGDtLf~~g~Gr~~~g~~~~~~~sl~kl~~L 159 (254)
T d1xm8a_ 126 AIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSL 159 (254)
T ss_dssp EEEEETTEETTEECCCSSSCHHHHHHHHHHHHTS
T ss_pred eEEeCCEEEeecCCccccccHHHHHHHHHHHHhC
Confidence 3599999988888999999999999999988765
No 8
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}
Probab=13.00 E-value=47 Score=21.02 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=33.2
Q ss_pred ccCCCCCCCCCCCCCcccceeeeee-----eccccCeeEEeCcEEEcCCCCCC
Q 040727 149 APLPEGYKRLIKWPKAGIGFVLMLC-----GIDLRNGVKVTGEYLIFPGGRTQ 196 (231)
Q Consensus 149 VPpP~GYK~PIrWPkSRDkIWysLa-----e~~~QNWV~veGD~f~FPGGGTq 196 (231)
+-.++|-..|.-+=...+.+||-|. ..+++......||.+.+|.|-.+
T Consensus 33 ~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H 85 (105)
T d1v70a_ 33 YALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEEEALLAPGMAAFAPAGAPH 85 (105)
T ss_dssp EEECTTCEEEEECCSSCEEEEEEEESCEEEEETTEEEEECTTCEEEECTTSCE
T ss_pred EEECCCCCCcceECCCCeEEEEEEeeEEEEEEeeeEEEecceEEEEeCCCCEE
Confidence 3345677778777555678888732 22667777788999999987554
No 9
>d1vffa1 c.1.8.4 (A:1-423) Beta-glucosidase A {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=12.22 E-value=16 Score=30.31 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=19.8
Q ss_pred EcCCCCCCCcCcHHHHHHHHHHHHh
Q 040727 189 IFPGGRTQFENGALHYIDFILKLQL 213 (231)
Q Consensus 189 ~FPGGGTqFp~GAd~YIDqIaeMIg 213 (231)
+||-||.-=+.|+++|-+.|.++..
T Consensus 76 I~P~~g~~n~~gl~~Y~~~i~~l~~ 100 (423)
T d1vffa1 76 LFPEENKFNEDAFMKYREIIDLLLT 100 (423)
T ss_dssp HCSBTTBCCHHHHHHHHHHHHHHHH
T ss_pred eecCCCccChHHHHHHHHHHHHHHh
Confidence 6788876656799999988888764
No 10
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}
Probab=11.07 E-value=40 Score=22.48 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=35.5
Q ss_pred ccccCCCCCCCCCCCCCcccceeeee-----eeccccCeeEEeCcEEEcCCCCCC
Q 040727 147 CIAPLPEGYKRLIKWPKAGIGFVLML-----CGIDLRNGVKVTGEYLIFPGGRTQ 196 (231)
Q Consensus 147 CLVPpP~GYK~PIrWPkSRDkIWysL-----ae~~~QNWV~veGD~f~FPGGGTq 196 (231)
+.+-.|+|-..|.-+=...+++||-| ....++......||.+.+|.|-.+
T Consensus 42 ~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~g~~H 96 (115)
T d1o4ta_ 42 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGKDVPIKAGDVCFTDSGESH 96 (115)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTEEEEEETTEEEEECTTCEE
T ss_pred EEEEECCCCCcCCEECCCCcEEEEEEECcceEEEcCeeEEeeccEEEEECCCCeE
Confidence 34445778888877755567888872 223667777788999999988654
Done!