BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040730
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93ZH0|LYM1_ARATH LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis
thaliana GN=LYM1 PE=1 SV=1
Length = 416
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 87/139 (62%), Gaps = 3/139 (2%)
Query: 1 ILVSNSISPMSPSLGNQILGTKSLVKVPISCPCIDGIRHSKSTTNNVRPADTIDSILNG- 59
IL++N+I P + N IL +K +K+PI+C C+DGIR S ST RP+D + SI +
Sbjct: 68 ILLANAIDISYPDVENHILPSKLFLKIPITCSCVDGIRKSVSTHYKTRPSDNLGSIADSV 127
Query: 60 FGGLVSAEQINSTSELSHP--VNDWTKLMIMLPCTCFNNGNNGVTSIYKSYVVQWGESPS 117
+GGLVSAEQI + ++ P ++ T L+I LPC CFN +N + ++Y SYVV+ ++
Sbjct: 128 YGGLVSAEQIQEANSVNDPSLLDVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLV 187
Query: 118 SVGSKFGVTMAELVATNGL 136
+ ++ T+ +L+ N +
Sbjct: 188 GIARRYSTTITDLMNVNAM 206
>sp|Q6NPN4|LYM3_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis
thaliana GN=LYM3 PE=1 SV=1
Length = 423
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 87/140 (62%), Gaps = 5/140 (3%)
Query: 1 ILVSNSISPMSPSLGNQILGTKSLVKVPISCPCIDGIRHSKSTTNNVRPADTIDSILNG- 59
+L+SNSI P + N +L K +K+PI+C C+DGIR S ST R +DT+ SI +
Sbjct: 65 MLLSNSIDISYPDVENHVLPAKLFLKIPITCSCVDGIRKSLSTHYKTRTSDTLGSIADSV 124
Query: 60 FGGLVSAEQI---NSTSELSHPVNDWTKLMIMLPCTCFNNGNNGVTSIYKSYVVQWGESP 116
+GGLVS EQI NS ++LS ++ TKL+I LPC CFN + + ++Y SYVV+ ++
Sbjct: 125 YGGLVSPEQIQVANSETDLSV-LDVGTKLVIPLPCACFNGTDESLPALYLSYVVRGIDTM 183
Query: 117 SSVGSKFGVTMAELVATNGL 136
+ + +F ++ +L N +
Sbjct: 184 AGIAKRFSTSVTDLTNVNAM 203
>sp|O23006|LYM2_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis
thaliana GN=LYM2 PE=1 SV=1
Length = 350
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 16 NQILGTKSLVKVPISCPCIDGIRHSKSTTNNVRPADTIDSILNG--FGGLVSAEQINSTS 73
+Q + +V+VPI C C +G S D I S + FGGLV+ E+I+ +
Sbjct: 80 DQRVNPNQVVRVPIHCSCSNGTGVSNRDIEYTIKKDDILSFVATEIFGGLVTYEKISEVN 139
Query: 74 ELSHP--VNDWTKLMIMLPCTCFNNGNNGVTSIYKSYVVQWGESPSSVGSKFGVTMAELV 131
++ P + K I LPC+C + NG ++ ++VV+ G S + ++FG L
Sbjct: 140 KIPDPNKIEIGQKFWIPLPCSC--DKLNGEDVVHYAHVVKLGSSLGEIAAQFGTDNTTLA 197
Query: 132 ATNGL 136
NG+
Sbjct: 198 QLNGI 202
>sp|Q8H8C7|CEBIP_ORYSJ Chitin elicitor-binding protein OS=Oryza sativa subsp. japonica
GN=CEBIP PE=1 SV=1
Length = 356
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 13 SLGNQILGTKSLVKVPISCPCIDGIRHS-KSTTNNVRPADTIDSIL-NGFGGLVSAEQIN 70
+L + + S VK+P C C + S + V+P D +D+I N F V+ ++I
Sbjct: 80 TLSSAPVAANSTVKIPFRCRCNGDVGQSDRLPIYVVQPQDGLDAIARNVFNAFVTYQEIA 139
Query: 71 STSELSHP--VNDWTKLMIMLPCTCFNNGNNGVTSIYKSYVVQWGESPSSVGSKFGVTMA 128
+ + + P +N L I LPC+C + G ++ +Y V GE+ S++ +K+GVT +
Sbjct: 140 AANNIPDPNKINVSQTLWIPLPCSC--DKEEGSNVMHLAYSVGKGENTSAIAAKYGVTES 197
Query: 129 ELVATNGL 136
L+ N +
Sbjct: 198 TLLTRNKI 205
>sp|Q5FIN8|METK_LACAC S-adenosylmethionine synthase OS=Lactobacillus acidophilus (strain
ATCC 700396 / NCK56 / N2 / NCFM) GN=metK PE=3 SV=1
Length = 399
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 12/103 (11%)
Query: 11 SPSLGNQILGTKSLVKVPISCPCI-DGIRHSKSTTNNVRPADTIDSILNGFGGLVSAEQI 69
P LG +V + P I DG+ HS T N D +D I G GL+ I
Sbjct: 80 RPELGFDGNNCAVMVDIDEQSPDIADGVDHSLETRENKSDNDELDQIGAGDQGLMFGFAI 139
Query: 70 NSTSELSHPVNDWTKLMIMLPCTCFNNGNNGVTSIYKSYVVQW 112
T EL + LP + + V S+ K + ++W
Sbjct: 140 KETPEL-----------MPLPISLSHRLMRRVASLRKDHTLEW 171
>sp|Q4L3C1|SLE1_STAHJ N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=sle1 PE=3 SV=1
Length = 329
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 107 SYVVQWGESPSSVGSKFGVTMAELVATNGL 136
+Y V++G+S SS+ S++G T ++ NGL
Sbjct: 153 TYTVRYGDSLSSIASRYGTTYQHIMRLNGL 182
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 42 STTNNVRPADTIDSILNGFGGLVSA-EQINS-TSELSHPVNDWTKLMIMLPCTCFNNGNN 99
STT+ VR +++ SI + +G VS + +N +S L P + N GN+
Sbjct: 27 STTHTVRSGESLWSISHHYGITVSKLKSLNGLSSNLIFPNQVLKVSGSSNYSSRSNYGNS 86
Query: 100 GVTSIYKSYVVQWGESPSSVGSKFGVTMAELVATNGLSQSVV 141
T Y V+ G+S SS+ S++G T ++ NGL+ ++
Sbjct: 87 SST-----YTVRAGDSLSSIASRYGTTYRHIMNLNGLNSFLI 123
>sp|Q8CMN2|SLE1_STAES N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=sle1 PE=3 SV=1
Length = 324
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 97 GNNGVTSIYKSYVVQWGESPSSVGSKFGVTMAELVATNGLS 137
G++G T+ +Y V++G+S S++ SK+G T +++ NGL+
Sbjct: 141 GSSGRTA---TYTVKYGDSLSAIASKYGTTYQKIMQLNGLT 178
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 108 YVVQWGESPSSVGSKFGVTMAELVATNGLSQSVV 141
Y V+ G+S SS+ +K+G T +++ NGL+ ++
Sbjct: 86 YTVKAGDSLSSIAAKYGTTYQKIMQLNGLNNYLI 119
>sp|Q5HRU2|SLE1_STAEQ N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=sle1 PE=3
SV=1
Length = 324
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 97 GNNGVTSIYKSYVVQWGESPSSVGSKFGVTMAELVATNGLS 137
G++G T+ +Y V++G+S S++ SK+G T +++ NGL+
Sbjct: 141 GSSGRTA---TYTVKYGDSLSAIASKYGTTYQKIMQLNGLT 178
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 108 YVVQWGESPSSVGSKFGVTMAELVATNGLSQSVV 141
Y V+ G+S SS+ +K+G T +++ NGL+ ++
Sbjct: 86 YTVKAGDSLSSIAAKYGTTYQKIMQLNGLNNYLI 119
>sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3
PE=2 SV=1
Length = 651
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 87 IMLPCTCFNNGNNGVTSIYKSYVVQWGESPSSVGSKFGVTMAELVATNGL 136
+ L C C ++G+ + SYV G+S S+ S+FGV+M + NG+
Sbjct: 127 VQLLCGC----SSGLWNYLMSYVAMAGDSVQSLSSRFGVSMDRIEDVNGI 172
>sp|P54421|LYTE_BACSU Probable peptidoglycan endopeptidase LytE OS=Bacillus subtilis
(strain 168) GN=lytE PE=1 SV=1
Length = 334
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 108 YVVQWGESPSSVGSKFGVTMAELVATNGLSQSVV 141
Y V+ G+S S + SK+G T+++L + NGL V+
Sbjct: 151 YKVKSGDSLSKIASKYGTTVSKLKSLNGLKSDVI 184
>sp|P39046|MUR2_ENTHA Muramidase-2 OS=Enterococcus hirae (strain ATCC 9790 / DSM 20160 /
JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO
1258) GN=EHR_05900 PE=1 SV=1
Length = 666
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 98 NNGVTSIYKSYVVQWGESPSSVGSKFGVTMAELVATNGLSQSVV 141
N G T+ +Y V+ GES SV +KFG++M +L+ N + + +
Sbjct: 404 NTGSTTSGSTYTVKAGESVWSVSNKFGISMNQLIQWNNIKNNFI 447
>sp|Q9Z7W1|Y593_CHLPN Uncharacterized protein CPn_0593/CP_0155/CPj0593/CpB0616
OS=Chlamydia pneumoniae GN=CPn_0593 PE=3 SV=1
Length = 362
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 106 KSYVVQWGESPSSVGSKFGVTMAELVATNGLSQ 138
+ YVVQ G+S + +FG+ M +++ NGL+
Sbjct: 314 EEYVVQDGDSLWLIAKRFGIPMDKIIQKNGLNH 346
>sp|O64825|LYK4_ARATH LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana GN=LYK4
PE=1 SV=1
Length = 612
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 25 VKVPISCPCIDGIRHSKSTTNNVRPADTIDSILNG-FGGLVS----AEQINSTSELSHPV 79
V +P++C C G + T ++P D+ +I N GL + A+Q N +S+ P
Sbjct: 102 VIIPLTCSCT-GDDSQSNITYTIQPNDSYFAIANDTLQGLSTCQALAKQNNVSSQSLFP- 159
Query: 80 NDWTKLMIMLPCTC--FNNGNNGVTSIYKSYVVQWGESPSSVGSKFGVTMAELVATNGLS 137
++++ + C C N SY V + ++ + + +FGV ++ + N +S
Sbjct: 160 --GMRIVVPIRCACPTAKQINEDGVKYLMSYTVVFEDTIAIISDRFGVETSKTLKANEMS 217
Query: 138 QSVVETF 144
E F
Sbjct: 218 FENSEVF 224
>sp|Q2YVT4|SLE1_STAAB N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=sle1 PE=3 SV=1
Length = 335
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 108 YVVQWGESPSSVGSKFGVTMAELVATNGL 136
Y VQ G+S S + SK+G T ++++ NGL
Sbjct: 160 YTVQAGDSLSLIASKYGTTYQKIMSLNGL 188
>sp|Q7A1T4|SLE1_STAAW N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain MW2) GN=sle1 PE=3 SV=1
Length = 334
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 108 YVVQWGESPSSVGSKFGVTMAELVATNGL 136
Y VQ G+S S + SK+G T ++++ NGL
Sbjct: 160 YTVQAGDSLSLIASKYGTTYQKIMSLNGL 188
>sp|P0C1U7|SLE1_STAAU N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
GN=sle1 PE=4 SV=1
Length = 334
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 108 YVVQWGESPSSVGSKFGVTMAELVATNGL 136
Y VQ G+S S + SK+G T ++++ NGL
Sbjct: 160 YTVQAGDSLSLIASKYGTTYQKIMSLNGL 188
>sp|Q6GC24|SLE1_STAAS N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain MSSA476) GN=sle1 PE=3 SV=1
Length = 334
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 108 YVVQWGESPSSVGSKFGVTMAELVATNGL 136
Y VQ G+S S + SK+G T ++++ NGL
Sbjct: 160 YTVQAGDSLSLIASKYGTTYQKIMSLNGL 188
>sp|Q7A7E0|SLE1_STAAN N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain N315) GN=sle1 PE=1 SV=1
Length = 334
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 108 YVVQWGESPSSVGSKFGVTMAELVATNGL 136
Y VQ G+S S + SK+G T ++++ NGL
Sbjct: 160 YTVQAGDSLSLIASKYGTTYQKIMSLNGL 188
>sp|Q5HIL2|SLE1_STAAC N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain COL) GN=sle1 PE=3 SV=1
Length = 334
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 108 YVVQWGESPSSVGSKFGVTMAELVATNGL 136
Y VQ G+S S + SK+G T ++++ NGL
Sbjct: 160 YTVQAGDSLSLIASKYGTTYQKIMSLNGL 188
>sp|Q2G0U9|SLE1_STAA8 N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain NCTC 8325) GN=sle1 PE=1 SV=1
Length = 334
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 108 YVVQWGESPSSVGSKFGVTMAELVATNGL 136
Y VQ G+S S + SK+G T ++++ NGL
Sbjct: 160 YTVQAGDSLSLIASKYGTTYQKIMSLNGL 188
>sp|Q2FJH7|SLE1_STAA3 N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain USA300) GN=sle1 PE=3 SV=1
Length = 334
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 108 YVVQWGESPSSVGSKFGVTMAELVATNGL 136
Y VQ G+S S + SK+G T ++++ NGL
Sbjct: 160 YTVQAGDSLSLIASKYGTTYQKIMSLNGL 188
>sp|Q214R5|3MGH_RHOPB Putative 3-methyladenine DNA glycosylase OS=Rhodopseudomonas
palustris (strain BisB18) GN=RPC_2571 PE=3 SV=2
Length = 200
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 56 ILNGFGG-LVSAEQINSTSELSHPVNDWTKLMIMLPCTCFNNGNNGVTSIYKSYVVQWGE 114
++ G GG +V E + T +H T P G GV +Y+SY + W
Sbjct: 38 LVEGSGGVIVEVEAYHHTDPAAHSFGGQT------PRNAVMFGPPGVAYVYRSYGIHWCL 91
Query: 115 SP--SSVGSKFGVTMAELVATNGLS 137
+ GS V + LV T+GL+
Sbjct: 92 NVVCEEAGSASAVLIRALVPTDGLA 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,270,243
Number of Sequences: 539616
Number of extensions: 1851863
Number of successful extensions: 3069
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2990
Number of HSP's gapped (non-prelim): 71
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)