Query 040730
Match_columns 144
No_of_seqs 163 out of 1208
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 18:06:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eby_A Chitin elicitor recepto 100.0 4.9E-34 1.7E-38 212.5 13.1 137 1-143 42-181 (212)
2 4eby_A Chitin elicitor recepto 99.9 4.5E-24 1.5E-28 158.7 11.0 97 43-144 10-120 (212)
3 2l9y_A CVNH-LYSM lectin; carbo 99.7 9E-20 3.1E-24 130.9 0.2 94 41-136 61-156 (167)
4 2gu1_A Zinc peptidase; alpha/b 99.5 7.3E-15 2.5E-19 116.7 7.4 100 43-144 8-145 (361)
5 2djp_A Hypothetical protein SB 99.4 5.1E-14 1.8E-18 88.5 3.6 60 21-91 3-64 (77)
6 2djp_A Hypothetical protein SB 99.3 7.5E-13 2.6E-17 83.1 3.9 52 81-144 3-55 (77)
7 1e0g_A Membrane-bound lytic mu 99.3 1.9E-12 6.5E-17 73.8 5.0 44 43-89 3-47 (48)
8 1e0g_A Membrane-bound lytic mu 99.2 9.8E-12 3.4E-16 70.7 4.2 38 106-144 3-40 (48)
9 2l9y_A CVNH-LYSM lectin; carbo 99.0 1.9E-10 6.4E-15 82.3 4.5 40 105-144 62-102 (167)
10 4a1k_A Putative L, D-transpept 98.8 5.6E-09 1.9E-13 74.4 4.3 45 43-89 3-48 (165)
11 2gu1_A Zinc peptidase; alpha/b 98.3 1.7E-07 5.7E-12 74.3 2.1 46 43-90 101-153 (361)
12 3slu_A M23 peptidase domain pr 97.6 0.00051 1.8E-08 54.5 10.0 92 43-136 15-140 (371)
13 3slu_A M23 peptidase domain pr 95.3 0.021 7.2E-07 45.2 5.0 41 104-144 13-58 (371)
14 2glo_A Brinker CG9653-PA; prot 85.1 0.57 2E-05 26.5 2.3 25 110-134 18-46 (59)
15 1tc3_C Protein (TC3 transposas 79.7 1.9 6.6E-05 22.3 3.1 23 111-133 19-41 (51)
16 2elh_A CG11849-PA, LD40883P; s 79.1 1.7 5.9E-05 26.5 3.0 23 111-133 36-58 (87)
17 2jn6_A Protein CGL2762, transp 77.8 1.6 5.4E-05 27.0 2.6 21 113-133 23-43 (97)
18 2jrt_A Uncharacterized protein 77.4 2.1 7.3E-05 27.0 3.1 26 109-134 45-70 (95)
19 1jko_C HIN recombinase, DNA-in 76.6 2 6.7E-05 22.7 2.5 24 110-133 18-41 (52)
20 2lfc_A Fumarate reductase, fla 70.4 2.9 9.8E-05 28.6 2.6 27 110-136 92-122 (160)
21 2rn7_A IS629 ORFA; helix, all 66.9 2.2 7.4E-05 26.9 1.3 21 113-133 30-50 (108)
22 2x48_A CAG38821; archeal virus 66.3 6.2 0.00021 21.3 3.1 23 111-133 29-51 (55)
23 1rr7_A Middle operon regulator 61.7 6.5 0.00022 26.1 3.0 20 113-132 92-111 (129)
24 1pdn_C Protein (PRD paired); p 56.2 9.7 0.00033 23.8 3.1 23 111-133 31-53 (128)
25 1k78_A Paired box protein PAX5 52.6 12 0.0004 24.7 3.1 23 111-133 46-68 (149)
26 4abx_A DNA repair protein RECN 51.8 9.6 0.00033 26.4 2.6 22 112-133 130-151 (175)
27 1neq_A DNA-binding protein NER 51.1 13 0.00045 21.9 2.8 23 111-133 20-42 (74)
28 1xn7_A Hypothetical protein YH 50.6 13 0.00043 22.4 2.7 19 114-132 17-35 (78)
29 1u78_A TC3 transposase, transp 50.1 14 0.00047 23.7 3.1 23 111-133 20-42 (141)
30 2o8x_A Probable RNA polymerase 48.7 17 0.00058 20.2 3.0 22 111-132 29-50 (70)
31 2p7v_B Sigma-70, RNA polymeras 46.8 21 0.00071 20.1 3.2 21 112-132 24-44 (68)
32 2k02_A Ferrous iron transport 45.6 16 0.00054 22.6 2.6 19 114-132 17-35 (87)
33 2oa4_A SIR5; structure, struct 44.7 16 0.00053 23.4 2.5 28 107-134 44-71 (101)
34 4iiw_A LMO1499 protein; struct 44.4 88 0.003 24.1 7.3 88 42-130 38-138 (349)
35 1fse_A GERE; helix-turn-helix 41.9 25 0.00087 19.7 3.1 23 110-132 23-45 (74)
36 1ku3_A Sigma factor SIGA; heli 40.9 28 0.00097 19.8 3.2 21 112-132 29-49 (73)
37 2k27_A Paired box protein PAX- 40.1 17 0.00058 24.2 2.3 24 111-134 39-62 (159)
38 2lfc_A Fumarate reductase, fla 39.7 16 0.00055 24.7 2.2 27 47-75 92-122 (160)
39 3frw_A Putative Trp repressor 39.7 20 0.00068 23.1 2.4 26 110-135 55-80 (107)
40 2k5e_A Uncharacterized protein 38.6 25 0.00085 20.7 2.7 24 112-135 39-63 (73)
41 2pij_A Prophage PFL 6 CRO; tra 38.5 29 0.00098 19.1 2.9 23 110-133 11-33 (67)
42 2jpc_A SSRB; DNA binding prote 38.3 27 0.00091 18.9 2.7 23 110-132 10-32 (61)
43 1j9i_A GPNU1 DBD;, terminase s 37.9 50 0.0017 18.6 3.9 25 115-139 4-28 (68)
44 3bd1_A CRO protein; transcript 37.8 24 0.00082 20.3 2.5 21 112-133 11-31 (79)
45 2jml_A DNA binding domain/tran 37.1 24 0.00081 20.9 2.4 19 115-133 7-25 (81)
46 2k9q_A Uncharacterized protein 36.7 26 0.00088 20.0 2.5 25 113-137 44-68 (77)
47 1x3u_A Transcriptional regulat 35.9 36 0.0012 19.4 3.1 22 111-132 29-50 (79)
48 2ek5_A Predicted transcription 35.4 31 0.0011 22.4 3.0 23 110-132 22-47 (129)
49 1je8_A Nitrate/nitrite respons 34.9 37 0.0013 20.0 3.1 22 111-132 34-55 (82)
50 2cob_A LCOR protein; MLR2, KIA 34.4 31 0.0011 20.5 2.5 22 110-131 26-48 (70)
51 1tty_A Sigma-A, RNA polymerase 34.0 41 0.0014 20.0 3.2 21 112-132 37-57 (87)
52 1nd9_A Translation initiation 34.0 25 0.00085 18.3 2.0 19 115-133 4-22 (49)
53 3tqn_A Transcriptional regulat 33.9 38 0.0013 21.3 3.2 23 110-132 27-52 (113)
54 2k53_A A3DK08 protein; NESG, C 33.3 41 0.0014 20.0 3.0 24 112-135 37-61 (76)
55 3qwg_A ESX-1 secretion-associa 33.2 15 0.00052 23.9 1.1 19 113-131 59-77 (123)
56 4dyq_A Gene 1 protein; GP1, oc 33.1 23 0.00078 23.4 2.1 24 110-133 25-49 (140)
57 3kor_A Possible Trp repressor; 32.7 21 0.00071 23.5 1.7 26 110-135 72-97 (119)
58 3hug_A RNA polymerase sigma fa 32.5 40 0.0014 20.1 3.0 22 111-132 51-72 (92)
59 3r1f_A ESX-1 secretion-associa 32.0 16 0.00054 24.2 1.1 19 113-131 61-79 (135)
60 3i71_A Ethanolamine utilizatio 32.0 46 0.0016 19.1 2.9 21 110-130 15-35 (68)
61 1hlv_A CENP-B, major centromer 31.8 31 0.0011 21.9 2.5 23 111-133 22-45 (131)
62 2ga1_A Protein of unknown func 30.8 45 0.0015 21.3 3.0 24 110-133 61-85 (106)
63 2l0k_A Stage III sporulation p 30.5 40 0.0014 20.9 2.7 23 111-133 18-40 (93)
64 2xi8_A Putative transcription 30.5 50 0.0017 17.6 3.0 23 111-133 12-34 (66)
65 2ao9_A Phage protein; structur 30.0 46 0.0016 22.8 3.2 24 112-135 47-70 (155)
66 1uxc_A FRUR (1-57), fructose r 29.9 45 0.0015 19.0 2.7 19 115-133 2-20 (65)
67 2ofy_A Putative XRE-family tra 29.8 24 0.00081 20.6 1.5 21 113-133 57-77 (86)
68 2b0l_A GTP-sensing transcripti 29.3 40 0.0014 21.0 2.6 17 115-131 45-61 (102)
69 1ufm_A COP9 complex subunit 4; 28.9 44 0.0015 20.2 2.7 19 114-132 31-49 (84)
70 2hin_A GP39, repressor protein 28.0 50 0.0017 19.3 2.7 18 116-133 13-30 (71)
71 3neu_A LIN1836 protein; struct 27.7 54 0.0019 21.0 3.2 23 110-132 31-56 (125)
72 1s7o_A Hypothetical UPF0122 pr 27.7 54 0.0018 20.8 3.1 22 111-132 36-57 (113)
73 2r1j_L Repressor protein C2; p 27.5 50 0.0017 17.8 2.6 23 111-133 16-38 (68)
74 3b7h_A Prophage LP1 protein 11 27.1 61 0.0021 18.1 3.1 22 112-133 19-40 (78)
75 3bs3_A Putative DNA-binding pr 26.9 62 0.0021 17.9 3.1 25 110-134 20-44 (76)
76 2xvc_A ESCRT-III, SSO0910; cel 26.9 60 0.002 18.5 2.7 17 116-132 28-44 (59)
77 3g5g_A Regulatory protein; tra 26.8 33 0.0011 21.0 1.9 21 113-133 70-90 (99)
78 3op9_A PLI0006 protein; struct 26.7 30 0.001 21.4 1.7 23 113-135 51-73 (114)
79 1zug_A Phage 434 CRO protein; 26.6 63 0.0022 17.5 3.0 22 112-133 15-36 (71)
80 1j1v_A Chromosomal replication 26.3 46 0.0016 20.5 2.5 19 115-133 6-24 (94)
81 3c57_A Two component transcrip 26.0 64 0.0022 19.5 3.1 22 111-132 40-61 (95)
82 2jt1_A PEFI protein; solution 25.9 51 0.0017 19.6 2.5 16 115-130 26-41 (77)
83 3mzy_A RNA polymerase sigma-H 25.7 57 0.0019 20.9 3.0 23 110-132 121-143 (164)
84 1r69_A Repressor protein CI; g 25.6 68 0.0023 17.3 3.0 22 112-133 13-34 (69)
85 1frr_A Ferredoxin I; electron 25.2 68 0.0023 19.1 3.2 21 106-126 13-33 (95)
86 3qq6_A HTH-type transcriptiona 25.1 69 0.0024 18.3 3.1 27 108-134 18-44 (78)
87 1fc3_A SPO0A; response regulat 25.0 55 0.0019 21.4 2.7 20 112-131 47-66 (120)
88 2l8n_A Transcriptional repress 25.0 58 0.002 18.6 2.6 20 114-133 10-29 (67)
89 4ham_A LMO2241 protein; struct 24.8 47 0.0016 21.4 2.5 23 110-132 32-57 (134)
90 1frd_A Heterocyst [2Fe-2S] fer 24.5 69 0.0024 19.3 3.1 21 106-126 16-36 (98)
91 1y7y_A C.AHDI; helix-turn-heli 24.3 75 0.0026 17.4 3.1 24 110-133 23-46 (74)
92 1v4r_A Transcriptional repress 24.2 40 0.0014 20.6 1.9 27 110-136 29-59 (102)
93 2b5a_A C.BCLI; helix-turn-heli 24.2 75 0.0026 17.6 3.1 23 111-133 21-43 (77)
94 1xsv_A Hypothetical UPF0122 pr 24.1 70 0.0024 20.1 3.1 22 111-132 39-60 (113)
95 2dgz_A Werner syndrome protein 24.1 18 0.00063 23.3 0.3 34 108-141 44-77 (113)
96 1gdt_A GD resolvase, protein ( 24.0 64 0.0022 21.9 3.1 23 111-133 156-178 (183)
97 2bt6_A Adrenodoxin 1; rutheniu 24.0 73 0.0025 19.7 3.2 22 106-127 19-40 (108)
98 1jq4_A Methane monooxygenase c 23.8 74 0.0025 19.2 3.1 21 106-126 17-37 (98)
99 2rnj_A Response regulator prot 23.8 58 0.002 19.3 2.6 22 111-132 42-63 (91)
100 1b0n_B Protein (SINI protein); 23.7 52 0.0018 18.6 2.1 16 118-133 20-35 (57)
101 1adr_A P22 C2 repressor; trans 23.6 64 0.0022 17.8 2.6 22 112-133 17-38 (76)
102 1rzs_A Antirepressor, regulato 23.6 58 0.002 18.0 2.4 22 113-134 10-31 (61)
103 2heo_A Z-DNA binding protein 1 23.6 65 0.0022 18.2 2.7 18 114-131 26-43 (67)
104 3omt_A Uncharacterized protein 23.4 68 0.0023 17.8 2.7 26 110-135 18-43 (73)
105 2fi0_A Conserved domain protei 23.4 69 0.0024 19.0 2.8 26 111-136 47-73 (81)
106 3pvv_A Chromosomal replication 23.4 55 0.0019 20.5 2.5 22 113-134 8-29 (101)
107 2wlb_A ETP1-FD, electron trans 23.3 78 0.0027 19.3 3.2 22 106-127 16-37 (103)
108 3trb_A Virulence-associated pr 22.9 45 0.0015 20.7 2.0 21 113-133 56-76 (104)
109 2kpj_A SOS-response transcript 22.9 79 0.0027 18.6 3.1 16 117-132 55-70 (94)
110 2a6c_A Helix-turn-helix motif; 22.6 84 0.0029 18.1 3.1 25 110-134 28-52 (83)
111 1wi9_A Protein C20ORF116 homol 21.3 77 0.0026 18.8 2.6 16 115-130 23-38 (72)
112 2r0q_C Putative transposon TN5 21.2 77 0.0026 22.0 3.1 23 111-133 173-195 (209)
113 3s8q_A R-M controller protein; 20.8 94 0.0032 17.6 3.1 23 111-133 22-44 (82)
114 3f52_A CLP gene regulator (CLG 20.7 49 0.0017 20.5 1.8 20 113-132 70-89 (117)
115 1a70_A Ferredoxin; iron-sulfur 20.7 91 0.0031 18.8 3.1 21 106-126 14-34 (97)
116 3t72_q RNA polymerase sigma fa 20.7 87 0.003 19.4 3.0 21 112-132 38-58 (99)
117 3lsg_A Two-component response 20.6 80 0.0027 18.9 2.8 19 114-132 20-38 (103)
118 1sfu_A 34L protein; protein/Z- 20.6 89 0.003 18.7 2.8 20 111-130 25-46 (75)
119 3kz3_A Repressor protein CI; f 20.5 80 0.0027 17.9 2.7 27 111-137 23-50 (80)
120 1xlq_A Putidaredoxin, PDX; [2F 20.5 89 0.003 19.1 3.0 21 106-126 13-33 (106)
121 3mn2_A Probable ARAC family tr 20.3 79 0.0027 19.2 2.8 19 114-132 19-37 (108)
122 2y5c_A Adrenodoxin-like protei 20.3 96 0.0033 19.2 3.2 21 107-127 19-39 (109)
123 2ef8_A C.ECOT38IS, putative tr 20.2 99 0.0034 17.4 3.1 23 111-133 21-43 (84)
124 3t76_A VANU, transcriptional r 20.1 98 0.0033 18.5 3.1 27 109-135 33-59 (88)
No 1
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=100.00 E-value=4.9e-34 Score=212.46 Aligned_cols=137 Identities=20% Similarity=0.302 Sum_probs=113.0
Q ss_pred CcccC-CCCCCCCCCCcceecCCCEEEEccCCCCCCCCcccCceeeEeCCCCCHHHHH-HHhCCCCCHHHHHhhcCCCCC
Q 040730 1 ILVSN-SISPMSPSLGNQILGTKSLVKVPISCPCIDGIRHSKSTTNNVRPADTIDSIL-NGFGGLVSAEQINSTSELSHP 78 (144)
Q Consensus 1 l~~~N-~l~~~~p~~~~~~l~~Gq~l~IP~~~~~~~~~~~~~~~~y~V~~GdTl~~IA-~~y~~~~~~~~l~~~N~~~~~ 78 (144)
|+++| +|. ..+.|++||.|+||..|.|..+........|+|++|||||.|| ++|++++++++|+++|++...
T Consensus 42 I~~~Np~l~------~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~~~~~ 115 (212)
T 4eby_A 42 ILRYNSNIK------DKDRIQMGSRVLVPFPCECQPGDFLGHNFSYSVRQEDTYERVAISNYANLTTMESLQARNPFPAT 115 (212)
T ss_dssp HHTTCTTCS------CTTSCCTTCEEEEEECCEEETTTEEEEEEEEECCTTCCHHHHHHTTTTTSSCHHHHHHHCCSCTT
T ss_pred HHHhccCCC------CcCccCCCCEEEEeccccccCCccccCceEEEecCCCcHHHHHHHhcCCCCCHHHHHHhcCCCcc
Confidence 35677 775 4678999999999999998654333345789999999999999 699999999999999996554
Q ss_pred -CCCCcEEEEecccccCCCCCCCcccceEEEEeccCCcHHHHHHHhCCCHHHHHHHcCCCCCCccc
Q 040730 79 -VNDWTKLMIMLPCTCFNNGNNGVTSIYKSYVVQWGESPSSVGSKFGVTMAELVATNGLSQSVVET 143 (144)
Q Consensus 79 -l~~Gq~l~IP~~~~~~~~~~~~~~~~~~~y~V~~GdTl~~IA~~~~~s~~~l~~~N~l~~~~i~~ 143 (144)
|++||.|.||..|.|+............+|+|++|||||+||++||+++++|++||++.+..+.+
T Consensus 116 ~l~~Gq~L~IP~~~~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~fgvsv~~L~~~N~~~~~~~~~ 181 (212)
T 4eby_A 116 NIPLSATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLSSIARSSGVSADILQRYNPGVNFNSGN 181 (212)
T ss_dssp CCCTTCEEEEEEECCCCCTTTCSSCCCEEEEECCTTCCHHHHHHHHTSCHHHHHHHSTTCCTTSCS
T ss_pred cCCCCCEEEEcCCCcCCCcccccCCCCeEEEEECCCCcHHHHHHHHCcCHHHHHHhcCCCccCCCC
Confidence 99999999999988865432222334578999999999999999999999999999987655543
No 2
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.91 E-value=4.5e-24 Score=158.71 Aligned_cols=97 Identities=18% Similarity=0.285 Sum_probs=84.4
Q ss_pred eeeEeCCCCCHHHHHHHhCCCCCH--------HHHHhhc-CCCC-C-CCCCcEEEEecccccCCCCCCCcccceEEEEec
Q 040730 43 TTNNVRPADTIDSILNGFGGLVSA--------EQINSTS-ELSH-P-VNDWTKLMIMLPCTCFNNGNNGVTSIYKSYVVQ 111 (144)
Q Consensus 43 ~~y~V~~GdTl~~IA~~y~~~~~~--------~~l~~~N-~~~~-~-l~~Gq~l~IP~~~~~~~~~~~~~~~~~~~y~V~ 111 (144)
..|+|++|||||.||++|+ +++ ++|+++| .+.+ . |++||.|.||..|.|.... ......+|+|+
T Consensus 10 ~~Y~V~~GDTL~~IA~~~~--vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~---~~~~~~~Y~V~ 84 (212)
T 4eby_A 10 ASYYLENGTTLSVINQNLN--SSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGD---FLGHNFSYSVR 84 (212)
T ss_dssp EEEECCTTCCHHHHHHHTC--CSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEEETTT---EEEEEEEEECC
T ss_pred EEEEeCCCCCHHHHHHHHC--CCchhccccCHHHHHHhccCCCCcCccCCCCEEEEeccccccCCc---cccCceEEEec
Confidence 5899999999999999999 898 9999999 6753 3 9999999999998876321 22345789999
Q ss_pred cCCcHHHHH-HHhC--CCHHHHHHHcCCCCCCcccC
Q 040730 112 WGESPSSVG-SKFG--VTMAELVATNGLSQSVVETF 144 (144)
Q Consensus 112 ~GdTl~~IA-~~~~--~s~~~l~~~N~l~~~~i~~~ 144 (144)
+|||||+|| ++|+ +++++|+++|++.+..|++|
T Consensus 85 ~GDTL~~IA~~~y~~lvt~~~L~~~N~~~~~~l~~G 120 (212)
T 4eby_A 85 QEDTYERVAISNYANLTTMESLQARNPFPATNIPLS 120 (212)
T ss_dssp TTCCHHHHHHTTTTTSSCHHHHHHHCCSCTTCCCTT
T ss_pred CCCcHHHHHHHhcCCCCCHHHHHHhcCCCcccCCCC
Confidence 999999999 8999 99999999999888888886
No 3
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.75 E-value=9e-20 Score=130.95 Aligned_cols=94 Identities=14% Similarity=0.027 Sum_probs=74.5
Q ss_pred CceeeEeCCCCCHHHHHHHhCCCCCHHHHHhhcCCCCC--CCCCcEEEEecccccCCCCCCCcccceEEEEeccCCcHHH
Q 040730 41 KSTTNNVRPADTIDSILNGFGGLVSAEQINSTSELSHP--VNDWTKLMIMLPCTCFNNGNNGVTSIYKSYVVQWGESPSS 118 (144)
Q Consensus 41 ~~~~y~V~~GdTl~~IA~~y~~~~~~~~l~~~N~~~~~--l~~Gq~l~IP~~~~~~~~~~~~~~~~~~~y~V~~GdTl~~ 118 (144)
....|+|++|||||.||++|+ +++.+|+++|++.++ |++||+|.||...................|.|++||||++
T Consensus 61 ~~~~y~V~~GDTL~~IA~~~~--~~~~~l~~~N~~~~~~~i~~Gq~L~ip~~~~~~~~~~~~~~~~~~~~~v~~GdtL~a 138 (167)
T 2l9y_A 61 GTATVTVQQGDTLRDIGRRFD--CDFHEIARRNNIQNEDLIYPGQVLQVPTKGGSGGGAGNFWDSARDVRLVDGGKVLEA 138 (167)
T ss_dssp SCEEEEECTTCCHHHHHHHTT--CCHHHHHHHHTCCGGGCCCTTEEEEESCCCCCSSSSCCGGGGEEEEEEETTTTEEEE
T ss_pred CCceEEECCCCcHHHHHHHcC--CCHHHHHHHcCCCCcccccCCCEEEEcCCCCccccccccccccceEEEeCCcCChHH
Confidence 347899999999999999998 999999999999875 9999999999754321101111112346799999999999
Q ss_pred HHHHhCCCHHHHHHHcCC
Q 040730 119 VGSKFGVTMAELVATNGL 136 (144)
Q Consensus 119 IA~~~~~s~~~l~~~N~l 136 (144)
||++||.++++++.+|..
T Consensus 139 IA~r~G~~v~s~i~Ln~~ 156 (167)
T 2l9y_A 139 ELRYSGGWNRSRIYLDEH 156 (167)
T ss_dssp EEEETTEEEEEEECGGGT
T ss_pred HHHHcCCceEEEEEcccc
Confidence 999999888777777754
No 4
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=99.55 E-value=7.3e-15 Score=116.74 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=76.9
Q ss_pred eeeEeCCCCCHHHHHHHhCCCCCHHHHHhhcCCCC-----C-CCCCcEEEEecccccCC--------C--------CCC-
Q 040730 43 TTNNVRPADTIDSILNGFGGLVSAEQINSTSELSH-----P-VNDWTKLMIMLPCTCFN--------N--------GNN- 99 (144)
Q Consensus 43 ~~y~V~~GdTl~~IA~~y~~~~~~~~l~~~N~~~~-----~-l~~Gq~l~IP~~~~~~~--------~--------~~~- 99 (144)
..|+|++||||+.|+++|+ ++.++|.++|.+.. . |++||.|.||....... . ...
T Consensus 8 ~~~~Vk~GDTL~~Ia~r~g--vs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~g 85 (361)
T 2gu1_A 8 IHYMVKVGDTLSGIFAQLG--VPYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRENDG 85 (361)
T ss_dssp EEEECCTTCCHHHHHHHTT--CCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEECTTS
T ss_pred eEEEECCCCcHHHHHHHcC--CCHHHHHHHHhhcccccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEecCCC
Confidence 6899999999999999999 99999999998752 2 99999999996421100 0 000
Q ss_pred ---------CcccceEEEEeccCCcHHHHHHHhCCCHHHHHHHcCCCC------CCcccC
Q 040730 100 ---------GVTSIYKSYVVQWGESPSSVGSKFGVTMAELVATNGLSQ------SVVETF 144 (144)
Q Consensus 100 ---------~~~~~~~~y~V~~GdTl~~IA~~~~~s~~~l~~~N~l~~------~~i~~~ 144 (144)
........|.|+.|||||+||++||+++++|++||++.. ..|++|
T Consensus 86 ~f~~~~~~~~~~~~~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~G 145 (361)
T 2gu1_A 86 SFSYDFQEISGEWREILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAG 145 (361)
T ss_dssp CEEEEEEECCCEEEEEEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-
T ss_pred cceeeecccCceEEEEEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCC
Confidence 001123468999999999999999999999999999843 346665
No 5
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=5.1e-14 Score=88.47 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=51.7
Q ss_pred CCCEEEEccCCCCCCCCcccCceeeEeCCCCCHHHHHHHhCCCCCHHHHHhhcCCCCC--CCCCcEEEEeccc
Q 040730 21 TKSLVKVPISCPCIDGIRHSKSTTNNVRPADTIDSILNGFGGLVSAEQINSTSELSHP--VNDWTKLMIMLPC 91 (144)
Q Consensus 21 ~Gq~l~IP~~~~~~~~~~~~~~~~y~V~~GdTl~~IA~~y~~~~~~~~l~~~N~~~~~--l~~Gq~l~IP~~~ 91 (144)
.||.+.||... ....|+|++|||||.||++|+ +++++|+++|++.++ |.+||.|.||...
T Consensus 3 ~Gq~l~ip~~~---------~~~~y~V~~GDTL~~IA~~~~--~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~~ 64 (77)
T 2djp_A 3 SGSSGCSPVRE---------RRLEHQLEPGDTLAGLALKYG--VTMEQIKRANRLYTNDSIFLKKTLYIPILT 64 (77)
T ss_dssp CCCCCCCCCCE---------EEEEECCCTTCCHHHHHHHHT--CCHHHHHHHHTCCCSSCGGGSSCEEEEEEC
T ss_pred CCcEeeccCCC---------CcEEEEECCCCcHHHHHHHHC--cCHHHHHHHcCCCCccccCCCCEEEECCCC
Confidence 58889888531 236799999999999999999 999999999999753 9999999999753
No 6
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=7.5e-13 Score=83.08 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=44.0
Q ss_pred CCcEEEEecccccCCCCCCCcccceEEEEeccCCcHHHHHHHhCCCHHHHHHHcCCC-CCCcccC
Q 040730 81 DWTKLMIMLPCTCFNNGNNGVTSIYKSYVVQWGESPSSVGSKFGVTMAELVATNGLS-QSVVETF 144 (144)
Q Consensus 81 ~Gq~l~IP~~~~~~~~~~~~~~~~~~~y~V~~GdTl~~IA~~~~~s~~~l~~~N~l~-~~~i~~~ 144 (144)
.||.+.+|.. ....+|+|++|||||+||++|++++++|+++|++. ...|++|
T Consensus 3 ~Gq~l~ip~~------------~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~G 55 (77)
T 2djp_A 3 SGSSGCSPVR------------ERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLK 55 (77)
T ss_dssp CCCCCCCCCC------------EEEEEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGS
T ss_pred CCcEeeccCC------------CCcEEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCC
Confidence 5788888742 13568999999999999999999999999999997 4578876
No 7
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.32 E-value=1.9e-12 Score=73.76 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=40.2
Q ss_pred eeeEeCCCCCHHHHHHHhCCCCCHHHHHhhcCCCCC-CCCCcEEEEec
Q 040730 43 TTNNVRPADTIDSILNGFGGLVSAEQINSTSELSHP-VNDWTKLMIML 89 (144)
Q Consensus 43 ~~y~V~~GdTl~~IA~~y~~~~~~~~l~~~N~~~~~-l~~Gq~l~IP~ 89 (144)
..|+|++|||||+||++|+ +++++|+++|+ ... |.+||.|.||.
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~--~~~~~l~~~N~-~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHG--VNIKDVMRWNS-DTANLQPGDKLTLFV 47 (48)
T ss_dssp CEEEECTTCCHHHHHHHHT--CCHHHHHHHCS-CGGGCCTTEEEECCC
T ss_pred EEEEEcCCCcHHHHHHHHC--cCHHHHHHhCC-CCCcCCcCCEEEEec
Confidence 5799999999999999999 99999999999 433 99999999985
No 8
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.22 E-value=9.8e-12 Score=70.74 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=34.8
Q ss_pred EEEEeccCCcHHHHHHHhCCCHHHHHHHcCCCCCCcccC
Q 040730 106 KSYVVQWGESPSSVGSKFGVTMAELVATNGLSQSVVETF 144 (144)
Q Consensus 106 ~~y~V~~GdTl~~IA~~~~~s~~~l~~~N~l~~~~i~~~ 144 (144)
.+|+|++|||||+||++|++++++|+++|+ ....|+||
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~-~~~~l~~G 40 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNS-DTANLQPG 40 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCHHHHHHHCS-CGGGCCTT
T ss_pred EEEEEcCCCcHHHHHHHHCcCHHHHHHhCC-CCCcCCcC
Confidence 479999999999999999999999999999 76678876
No 9
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.03 E-value=1.9e-10 Score=82.31 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=36.5
Q ss_pred eEEEEeccCCcHHHHHHHhCCCHHHHHHHcCCCC-CCcccC
Q 040730 105 YKSYVVQWGESPSSVGSKFGVTMAELVATNGLSQ-SVVETF 144 (144)
Q Consensus 105 ~~~y~V~~GdTl~~IA~~~~~s~~~l~~~N~l~~-~~i~~~ 144 (144)
..+|+|++|||||+||++|++++.+|+++|++.+ ..|+||
T Consensus 62 ~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~~~~~~~i~~G 102 (167)
T 2l9y_A 62 TATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQNEDLIYPG 102 (167)
T ss_dssp CEEEEECTTCCHHHHHHHTTCCHHHHHHHHTCCGGGCCCTT
T ss_pred CceEEECCCCcHHHHHHHcCCCHHHHHHHcCCCCcccccCC
Confidence 4689999999999999999999999999999976 568876
No 10
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.76 E-value=5.6e-09 Score=74.42 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=42.1
Q ss_pred eeeEeCCCCCHHHHHHHhCCCCCHHHHHhhcCCCCC-CCCCcEEEEec
Q 040730 43 TTNNVRPADTIDSILNGFGGLVSAEQINSTSELSHP-VNDWTKLMIML 89 (144)
Q Consensus 43 ~~y~V~~GdTl~~IA~~y~~~~~~~~l~~~N~~~~~-l~~Gq~l~IP~ 89 (144)
.+|+|++||||+.||++|+ ++..+|+++|+..++ +.+|+.|.||.
T Consensus 3 ~~y~V~~GdtL~~IA~~f~--~g~~~l~~aNp~vd~~l~~g~~i~ip~ 48 (165)
T 4a1k_A 3 LTYQVKQGDTLNSIAADFR--ISTAALLQANPSLQAGLTAGQSIVIPG 48 (165)
T ss_dssp EEEECCTTCCHHHHHHHTT--CCHHHHHHHCGGGGGCCCTTCEEEETT
T ss_pred EEEEECCCCCHHHHHHHhC--CCHHHHHHhCccCCCccCCCccccCcc
Confidence 5899999999999999999 999999999998877 89999999984
No 11
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=98.32 E-value=1.7e-07 Score=74.32 Aligned_cols=46 Identities=7% Similarity=0.121 Sum_probs=39.6
Q ss_pred eeeEeCCCCCHHHHHHHhCCCCCHHHHHhhcCCCC------C-CCCCcEEEEecc
Q 040730 43 TTNNVRPADTIDSILNGFGGLVSAEQINSTSELSH------P-VNDWTKLMIMLP 90 (144)
Q Consensus 43 ~~y~V~~GdTl~~IA~~y~~~~~~~~l~~~N~~~~------~-l~~Gq~l~IP~~ 90 (144)
..|+++.|||||.||++|+ ++.+.|+++|.+.. . |++|++|.|+..
T Consensus 101 ~~~~v~igdSL~~iA~~~G--vs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~~ 153 (361)
T 2gu1_A 101 ILFSGEINGSFSVSARRVG--LTSSQVANITQVMKDKIDFSRSLRAGDRFDILVK 153 (361)
T ss_dssp EEEEEESSSCHHHHHHHTT--CCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEEEE
T ss_pred EEEEEEECCcHHHHHHHcC--CCHHHHHHHHHhhcccccccccCCCCCEEEEEEE
Confidence 4688999999999999999 99999999998753 2 999999999864
No 12
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.58 E-value=0.00051 Score=54.54 Aligned_cols=92 Identities=12% Similarity=0.127 Sum_probs=64.3
Q ss_pred eeeEeCCCCCHHHHHHHhCCCCCHHHHHhhcCCC----C--CCCCCcEEEEecccccCCCC-----CCCccc--------
Q 040730 43 TTNNVRPADTIDSILNGFGGLVSAEQINSTSELS----H--PVNDWTKLMIMLPCTCFNNG-----NNGVTS-------- 103 (144)
Q Consensus 43 ~~y~V~~GdTl~~IA~~y~~~~~~~~l~~~N~~~----~--~l~~Gq~l~IP~~~~~~~~~-----~~~~~~-------- 103 (144)
..|+|++||||..|-++++ ++..++.+++... . .|++||.|.+.......-.. ......
T Consensus 15 ~~~~V~~GDTL~~IL~r~G--ls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~~~~~l~~l~~~~~~~~~~~~v~i~~~ 92 (371)
T 3slu_A 15 VQEAVQPGDSLADVLARSG--MARDEIARITEKYGGEADLRHLRADQSVHVLVGGDGGAREVQFFTDEDGERNLVALEKK 92 (371)
T ss_dssp EEEECCTTCCHHHHHHHTT--CCHHHHHHHHTTC------CCBCSSSEEEEEECTTSCEEEEEEEECCTTEEEEEEEEEE
T ss_pred EEEEECCCCcHHHHHHHcC--CCHHHHHHHHHhccccCchhhCCCCCEEEEEECCCCCeEEEEEEecCCCceeEEEEEec
Confidence 6799999999999999999 9999998886654 1 29999999997642110000 000000
Q ss_pred ---------------ceEEEEeccCCcHHHHHHHhCCCHHHHHHHcCC
Q 040730 104 ---------------IYKSYVVQWGESPSSVGSKFGVTMAELVATNGL 136 (144)
Q Consensus 104 ---------------~~~~y~V~~GdTl~~IA~~~~~s~~~l~~~N~l 136 (144)
....+.+.-.++|+..|.+.|++.+.+++++.+
T Consensus 93 dg~f~~~~~~~~~~~~~~~~~g~I~~Sl~~a~~~agl~~~~~~~l~~i 140 (371)
T 3slu_A 93 GGIWRRSASEADMKVLPTLRSVVVKTSARGSLARAEVPVEIRESLSGI 140 (371)
T ss_dssp TTEEEECCCGGGEEEEEEEEEEECSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCeeEEEeeecccceeeeEEEEEEeccHHHHHHHcCCCHHHHHHHHHH
Confidence 000122334899999999999999999888865
No 13
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=95.34 E-value=0.021 Score=45.23 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=33.3
Q ss_pred ceEEEEeccCCcHHHHHHHhCCCHHHHHHHcCCC-----CCCcccC
Q 040730 104 IYKSYVVQWGESPSSVGSKFGVTMAELVATNGLS-----QSVVETF 144 (144)
Q Consensus 104 ~~~~y~V~~GdTl~~IA~~~~~s~~~l~~~N~l~-----~~~i~~~ 144 (144)
.-..|+|++||||.+|-+++|++..++.+++... -..|+||
T Consensus 13 ~W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpG 58 (371)
T 3slu_A 13 YWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRAD 58 (371)
T ss_dssp EEEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSS
T ss_pred ceEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCC
Confidence 4567999999999999999999999999987653 3456554
No 14
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=85.13 E-value=0.57 Score=26.53 Aligned_cols=25 Identities=4% Similarity=0.064 Sum_probs=21.4
Q ss_pred eccCCc----HHHHHHHhCCCHHHHHHHc
Q 040730 110 VQWGES----PSSVGSKFGVTMAELVATN 134 (144)
Q Consensus 110 V~~GdT----l~~IA~~~~~s~~~l~~~N 134 (144)
+..|.+ +..||++||++...|..|=
T Consensus 18 ~~~g~s~~~~~~~vA~~~gIs~~tl~~W~ 46 (59)
T 2glo_A 18 YRNDNDCKGNQRATARKYNIHRRQIQKWL 46 (59)
T ss_dssp HHHCTTTTTCHHHHHHHTTSCHHHHHHHH
T ss_pred HHcCCCcchHHHHHHHHHCcCHHHHHHHH
Confidence 356778 9999999999999998883
No 15
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=79.68 E-value=1.9 Score=22.33 Aligned_cols=23 Identities=9% Similarity=-0.062 Sum_probs=20.4
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
..|-+...||+.+|++...+..+
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~ 41 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVY 41 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57899999999999999888766
No 16
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=79.15 E-value=1.7 Score=26.53 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.8
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
..|.++..||++||++...|.+|
T Consensus 36 ~~g~s~~~iA~~~gIs~sTl~rW 58 (87)
T 2elh_A 36 HDGESKASVARDIGVPESTLRGW 58 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHH
Confidence 57899999999999999988776
No 17
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=77.80 E-value=1.6 Score=27.00 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=19.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHH
Q 040730 113 GESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 113 GdTl~~IA~~~~~s~~~l~~~ 133 (144)
|.++..||++||++...|..|
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW 43 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNW 43 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHH
Confidence 889999999999999999877
No 18
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=77.41 E-value=2.1 Score=27.04 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=22.4
Q ss_pred EeccCCcHHHHHHHhCCCHHHHHHHc
Q 040730 109 VVQWGESPSSVGSKFGVTMAELVATN 134 (144)
Q Consensus 109 ~V~~GdTl~~IA~~~~~s~~~l~~~N 134 (144)
....+.|+..+|++|+++..+|..|-
T Consensus 45 ~~~g~~s~~e~arry~Is~s~i~~W~ 70 (95)
T 2jrt_A 45 VIHGLITEREALDRYSLSEEEFALWR 70 (95)
T ss_dssp HHTTSSCHHHHHHHTTCCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHhCCCHHHHHHHH
Confidence 34567799999999999999999885
No 19
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=76.60 E-value=2 Score=22.68 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.9
Q ss_pred eccCCcHHHHHHHhCCCHHHHHHH
Q 040730 110 VQWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 110 V~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
+..|.|...||+.+|++...+..+
T Consensus 18 ~~~g~s~~~ia~~lgvs~~Tv~r~ 41 (52)
T 1jko_C 18 LEKGHPRQQLAIIFGIGVSTLYRY 41 (52)
T ss_dssp HHTTCCHHHHHHTTSCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHH
Confidence 356899999999999999998776
No 20
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=70.43 E-value=2.9 Score=28.63 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=21.7
Q ss_pred eccCCcHHHHHHHhCCCHH----HHHHHcCC
Q 040730 110 VQWGESPSSVGSKFGVTMA----ELVATNGL 136 (144)
Q Consensus 110 V~~GdTl~~IA~~~~~s~~----~l~~~N~l 136 (144)
+..+|||..+|++.|++.+ ++.++|..
T Consensus 92 ~~kadTleeLA~~~gid~~~L~~TV~~yN~~ 122 (160)
T 2lfc_A 92 VFVKGSLESAAEQAGIVVDELVQTVKNYQGY 122 (160)
T ss_dssp SEECSSHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred eEecCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 5678999999999999965 55677843
No 21
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=66.91 E-value=2.2 Score=26.88 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=18.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHH
Q 040730 113 GESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 113 GdTl~~IA~~~~~s~~~l~~~ 133 (144)
|.++..||++|||+...|..|
T Consensus 30 g~s~~~va~~~gIs~~tl~~W 50 (108)
T 2rn7_A 30 WATICSIAPKIGCTPETLRVW 50 (108)
T ss_dssp HHHHHHHHHHHTSCHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHH
Confidence 368999999999999999887
No 22
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=66.29 E-value=6.2 Score=21.32 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=20.3
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
..|-|...||+.+|++...+..+
T Consensus 29 ~~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 29 KMGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57899999999999999888765
No 23
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=61.68 E-value=6.5 Score=26.11 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=18.0
Q ss_pred CCcHHHHHHHhCCCHHHHHH
Q 040730 113 GESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 113 GdTl~~IA~~~~~s~~~l~~ 132 (144)
|.+...+|++||+|...+.+
T Consensus 92 G~n~~eLArkYgLSer~I~~ 111 (129)
T 1rr7_A 92 GRNVSELTTRYGVTFNTVYK 111 (129)
T ss_dssp SSCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
Confidence 89999999999999887765
No 24
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=56.24 E-value=9.7 Score=23.81 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=20.0
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
..|.+...||++||++...+..|
T Consensus 31 ~~g~s~~~ia~~lgis~~Tv~~w 53 (128)
T 1pdn_C 31 ADGIRPCVISRQLRVSHGCVSKI 53 (128)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999998877655
No 25
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=52.65 E-value=12 Score=24.66 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.4
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
..|.+...||+.||++...+..|
T Consensus 46 ~~G~s~~~iA~~lgis~~TV~rw 68 (149)
T 1k78_A 46 HQGVRPCDISRQLRVSHGCVSKI 68 (149)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999998888766
No 26
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=51.84 E-value=9.6 Score=26.38 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=18.3
Q ss_pred cCCcHHHHHHHhCCCHHHHHHH
Q 040730 112 WGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 112 ~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
+=+.+..+++|||.++++|..+
T Consensus 130 RL~~l~~L~RKyg~~~eell~~ 151 (175)
T 4abx_A 130 RLSALSKLKNKYGPTLEDVVEF 151 (175)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHH
Confidence 3467889999999999998765
No 27
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=51.12 E-value=13 Score=21.86 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.2
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
+.|=|+..+|++.|++...|..+
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 67889999999999999888765
No 28
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=50.59 E-value=13 Score=22.43 Aligned_cols=19 Identities=5% Similarity=0.114 Sum_probs=15.4
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 040730 114 ESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 114 dTl~~IA~~~~~s~~~l~~ 132 (144)
=++..||++|++|...|.+
T Consensus 17 vsv~eLa~~l~VS~~TIRr 35 (78)
T 1xn7_A 17 MEAAQISQTLNTPQPMINA 35 (78)
T ss_dssp BCHHHHHHHTTCCHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHH
Confidence 4788999999999877643
No 29
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=50.11 E-value=14 Score=23.73 Aligned_cols=23 Identities=9% Similarity=-0.062 Sum_probs=20.4
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
..|.+...||+.||++...+..|
T Consensus 20 ~~G~s~~~ia~~lgis~~Tv~r~ 42 (141)
T 1u78_A 20 LLNVSLHEMSRKISRSRHCIRVY 42 (141)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 67999999999999998888765
No 30
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=48.71 E-value=17 Score=20.25 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=18.7
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~ 132 (144)
-.|-|...||+.+|++...+..
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~ 50 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRS 50 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 4689999999999999877654
No 31
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=46.81 E-value=21 Score=20.11 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.2
Q ss_pred cCCcHHHHHHHhCCCHHHHHH
Q 040730 112 WGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 112 ~GdTl~~IA~~~~~s~~~l~~ 132 (144)
.|-|+..||+.+|+|...+..
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~ 44 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQ 44 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHH
Confidence 589999999999999877654
No 32
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=45.56 E-value=16 Score=22.59 Aligned_cols=19 Identities=5% Similarity=0.085 Sum_probs=15.3
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 040730 114 ESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 114 dTl~~IA~~~~~s~~~l~~ 132 (144)
=++..||++|++|...|.+
T Consensus 17 vsv~eLA~~l~VS~~TIRr 35 (87)
T 2k02_A 17 MEAKQLSARLQTPQPLIDA 35 (87)
T ss_dssp EEHHHHHHHTTCCHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHH
Confidence 4678999999999877643
No 33
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=44.72 E-value=16 Score=23.36 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=23.1
Q ss_pred EEEeccCCcHHHHHHHhCCCHHHHHHHc
Q 040730 107 SYVVQWGESPSSVGSKFGVTMAELVATN 134 (144)
Q Consensus 107 ~y~V~~GdTl~~IA~~~~~s~~~l~~~N 134 (144)
.+...-+-|+...|++|+++.++|.+|=
T Consensus 44 ~~v~~g~lS~~EAa~ry~Is~~ei~~W~ 71 (101)
T 2oa4_A 44 RGVIYGLITLAEAKQTYGLSDEEFNSWV 71 (101)
T ss_dssp HHHHHTTCCHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHhCCCHHHHHHHH
Confidence 3555668889999999999999998873
No 34
>4iiw_A LMO1499 protein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PGE; 2.60A {Listeria monocytogenes}
Probab=44.37 E-value=88 Score=24.12 Aligned_cols=88 Identities=10% Similarity=0.035 Sum_probs=51.7
Q ss_pred ceeeEeCCCCCHHHHHHHh--CCCCCH----HHHHhhcCCCCCCCCCcEEEEecccccC--CCCCCCcccceEEEEeccC
Q 040730 42 STTNNVRPADTIDSILNGF--GGLVSA----EQINSTSELSHPVNDWTKLMIMLPCTCF--NNGNNGVTSIYKSYVVQWG 113 (144)
Q Consensus 42 ~~~y~V~~GdTl~~IA~~y--~~~~~~----~~l~~~N~~~~~l~~Gq~l~IP~~~~~~--~~~~~~~~~~~~~y~V~~G 113 (144)
....+|.+|+++..|++.. .|++.- ..+.++++ ...|++|.-..-|...... ..-..+.......-++..|
T Consensus 38 ~v~V~I~~Gss~~~Ia~~L~~~GvI~s~~~F~~~ar~~~-~~~ikaG~Y~L~~~mS~~eil~~L~~g~~~~~~~vtipEG 116 (349)
T 4iiw_A 38 KITVEIPAGSSISDISTILEDKKVINNASIFSFYVKYNN-DTNLKAGNYELSPAMNTDQIVKKMQEGKTVAPAKLVIPEG 116 (349)
T ss_dssp CEEEEECTTCCHHHHHHHHHHTTSSSCHHHHHHHHHHHT-CCCCCCEEEEECTTCCHHHHHHHHHTTCCSBCCCEEECTT
T ss_pred eEEEEECCCCCHHHHHHHHHHCCCcCCHHHHHHHHHhcC-CCceeeeEEEECCCCCHHHHHHHHHhCCcceeEEEEECCC
Confidence 3567899999999999943 444542 24456665 4449999876544221000 0000111112245788999
Q ss_pred CcHHHHHHH-----hCCCHHHH
Q 040730 114 ESPSSVGSK-----FGVTMAEL 130 (144)
Q Consensus 114 dTl~~IA~~-----~~~s~~~l 130 (144)
.|+..|+++ .+++.+++
T Consensus 117 ~t~~~i~~~l~~~~~~~~~~~~ 138 (349)
T 4iiw_A 117 YTLDQIADRIVAYQPKLKKADV 138 (349)
T ss_dssp CCHHHHHHHHHHHSTTSCHHHH
T ss_pred CcHHHHHHHHHhhccCCCHHHH
Confidence 999998864 34565554
No 35
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=41.94 E-value=25 Score=19.70 Aligned_cols=23 Identities=4% Similarity=0.092 Sum_probs=19.0
Q ss_pred eccCCcHHHHHHHhCCCHHHHHH
Q 040730 110 VQWGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 110 V~~GdTl~~IA~~~~~s~~~l~~ 132 (144)
+..|-+...||+.+|++...+..
T Consensus 23 ~~~g~s~~eIA~~l~is~~tV~~ 45 (74)
T 1fse_A 23 LVQDKTTKEIASELFISEKTVRN 45 (74)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHH
Confidence 36789999999999999876643
No 36
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=40.95 E-value=28 Score=19.81 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=17.9
Q ss_pred cCCcHHHHHHHhCCCHHHHHH
Q 040730 112 WGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 112 ~GdTl~~IA~~~~~s~~~l~~ 132 (144)
.|-|+..||+.+|+|...+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~ 49 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQ 49 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
Confidence 588999999999999877654
No 37
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=40.14 E-value=17 Score=24.18 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=21.3
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHHc
Q 040730 111 QWGESPSSVGSKFGVTMAELVATN 134 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~N 134 (144)
..|.+...||++||++...+.+|=
T Consensus 39 ~~G~s~~~IA~~lgis~~TV~rwl 62 (159)
T 2k27_A 39 HQGVRPCDISRQLRVSHGCVSKIL 62 (159)
T ss_dssp HHTCCHHHHHHHHTCCSHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 579999999999999998888773
No 38
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=39.74 E-value=16 Score=24.74 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=21.5
Q ss_pred eCCCCCHHHHHHHhCCCCCHH----HHHhhcCC
Q 040730 47 VRPADTIDSILNGFGGLVSAE----QINSTSEL 75 (144)
Q Consensus 47 V~~GdTl~~IA~~y~~~~~~~----~l~~~N~~ 75 (144)
+.++|||.++|++.+ ++.+ ++.++|..
T Consensus 92 ~~kadTleeLA~~~g--id~~~L~~TV~~yN~~ 122 (160)
T 2lfc_A 92 VFVKGSLESAAEQAG--IVVDELVQTVKNYQGY 122 (160)
T ss_dssp SEECSSHHHHHHHHT--CCHHHHHHHHHHHHHH
T ss_pred eEecCCHHHHHHHhC--CCHHHHHHHHHHHHHH
Confidence 467899999999998 7764 66777854
No 39
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=39.69 E-value=20 Score=23.14 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=23.0
Q ss_pred eccCCcHHHHHHHhCCCHHHHHHHcC
Q 040730 110 VQWGESPSSVGSKFGVTMAELVATNG 135 (144)
Q Consensus 110 V~~GdTl~~IA~~~~~s~~~l~~~N~ 135 (144)
...|-|+..|++..|+|...|.+.++
T Consensus 55 L~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 55 LTDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCccHHHHHHHHH
Confidence 56799999999999999999988764
No 40
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=38.64 E-value=25 Score=20.73 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.2
Q ss_pred cCCcHHHHHHHhCCCHHHHH-HHcC
Q 040730 112 WGESPSSVGSKFGVTMAELV-ATNG 135 (144)
Q Consensus 112 ~GdTl~~IA~~~~~s~~~l~-~~N~ 135 (144)
.++||..-|+.+|+++++|. ++|.
T Consensus 39 ~~~tL~~Aa~~~gid~~~ll~~Ln~ 63 (73)
T 2k5e_A 39 QNESLEQGANAHGLNVEDILRDLNA 63 (73)
T ss_dssp GGSBHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHH
Confidence 57999999999999998876 5553
No 41
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=38.53 E-value=29 Score=19.15 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=19.6
Q ss_pred eccCCcHHHHHHHhCCCHHHHHHH
Q 040730 110 VQWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 110 V~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
.+.| +...+|++.|++...|.++
T Consensus 11 ~~~g-s~~~~A~~lgis~~~vs~~ 33 (67)
T 2pij_A 11 EEHG-TQSALAAALGVNQSAISQM 33 (67)
T ss_dssp HHTC-CHHHHHHHHTSCHHHHHHH
T ss_pred HHcC-CHHHHHHHHCcCHHHHHHH
Confidence 4567 9999999999999888765
No 42
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=38.31 E-value=27 Score=18.92 Aligned_cols=23 Identities=9% Similarity=0.277 Sum_probs=18.8
Q ss_pred eccCCcHHHHHHHhCCCHHHHHH
Q 040730 110 VQWGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 110 V~~GdTl~~IA~~~~~s~~~l~~ 132 (144)
+..|-|...||+..|++...+..
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~ 32 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVET 32 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHH
Confidence 35688999999999999877653
No 43
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=37.91 E-value=50 Score=18.60 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=19.6
Q ss_pred cHHHHHHHhCCCHHHHHHHcCCCCC
Q 040730 115 SPSSVGSKFGVTMAELVATNGLSQS 139 (144)
Q Consensus 115 Tl~~IA~~~~~s~~~l~~~N~l~~~ 139 (144)
|...+|+.+|++...|.+|=...-|
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~~G~P 28 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQGMP 28 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTTTCC
T ss_pred CHHHHHHHHCcCHHHHHHHHHCCCC
Confidence 4567899999999999988655433
No 44
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=37.75 E-value=24 Score=20.33 Aligned_cols=21 Identities=24% Similarity=0.367 Sum_probs=14.3
Q ss_pred cCCcHHHHHHHhCCCHHHHHHH
Q 040730 112 WGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 112 ~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
.| |...+|++.|++...|.+|
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~ 31 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNW 31 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHH
Confidence 46 6777777777776666655
No 45
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=37.09 E-value=24 Score=20.86 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=16.7
Q ss_pred cHHHHHHHhCCCHHHHHHH
Q 040730 115 SPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 115 Tl~~IA~~~~~s~~~l~~~ 133 (144)
++..+|+.+|++...|..|
T Consensus 7 ~i~e~A~~~gvs~~tlR~y 25 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAW 25 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHH
Confidence 5678999999999999877
No 46
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=36.74 E-value=26 Score=19.99 Aligned_cols=25 Identities=12% Similarity=-0.065 Sum_probs=20.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHcCCC
Q 040730 113 GESPSSVGSKFGVTMAELVATNGLS 137 (144)
Q Consensus 113 GdTl~~IA~~~~~s~~~l~~~N~l~ 137 (144)
-+++..||+.||+++++|.....-.
T Consensus 44 ~~~l~~ia~~l~v~~~~l~~~~~~~ 68 (77)
T 2k9q_A 44 VVKYIAFLRSKGVDLNALFDRIIVN 68 (77)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHSSS
T ss_pred HHHHHHHHHHhCcCHHHHhCccccC
Confidence 3678899999999999998876553
No 47
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=35.93 E-value=36 Score=19.38 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=18.8
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~ 132 (144)
-.|-|...||+.+|++...+..
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~ 50 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEV 50 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 5799999999999999877653
No 48
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=35.43 E-value=31 Score=22.42 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=17.2
Q ss_pred eccCC---cHHHHHHHhCCCHHHHHH
Q 040730 110 VQWGE---SPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 110 V~~Gd---Tl~~IA~~~~~s~~~l~~ 132 (144)
.++|| +...||++||+|...+.+
T Consensus 22 l~~G~~LPse~~La~~~gvSr~tVr~ 47 (129)
T 2ek5_A 22 LSIDQRVPSTNELAAFHRINPATARN 47 (129)
T ss_dssp SCTTSCBCCHHHHHHHTTCCHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHH
Confidence 46777 556899999999766653
No 49
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=34.90 E-value=37 Score=19.96 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=19.1
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~ 132 (144)
..|-|...||+++|++...+..
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~ 55 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKV 55 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 5899999999999999877653
No 50
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=34.44 E-value=31 Score=20.48 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.0
Q ss_pred eccC-CcHHHHHHHhCCCHHHHH
Q 040730 110 VQWG-ESPSSVGSKFGVTMAELV 131 (144)
Q Consensus 110 V~~G-dTl~~IA~~~~~s~~~l~ 131 (144)
|+.| -+...-|+.|||+-..|.
T Consensus 26 Vr~g~mS~~~Aak~yGVP~sTL~ 48 (70)
T 2cob_A 26 VMSGKMSVSKAQSIYGIPHSTLE 48 (70)
T ss_dssp HHTTSSCHHHHHHHHTCCHHHHH
T ss_pred HHcCCccHHHHHHHhCCChHHHH
Confidence 6778 699999999999988775
No 51
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=34.01 E-value=41 Score=19.96 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.0
Q ss_pred cCCcHHHHHHHhCCCHHHHHH
Q 040730 112 WGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 112 ~GdTl~~IA~~~~~s~~~l~~ 132 (144)
.|-|+..||+.+|+|...+..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~ 57 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQ 57 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
Confidence 588999999999999877654
No 52
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=33.99 E-value=25 Score=18.34 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=15.6
Q ss_pred cHHHHHHHhCCCHHHHHHH
Q 040730 115 SPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 115 Tl~~IA~~~~~s~~~l~~~ 133 (144)
+++.+|+.+|++.+++.+.
T Consensus 4 rv~~lAkel~~~~k~l~~~ 22 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQ 22 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHH
Confidence 4688999999998887653
No 53
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=33.90 E-value=38 Score=21.31 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=16.5
Q ss_pred eccCC---cHHHHHHHhCCCHHHHHH
Q 040730 110 VQWGE---SPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 110 V~~Gd---Tl~~IA~~~~~s~~~l~~ 132 (144)
.++|| +...||++||++...+.+
T Consensus 27 ~~~G~~lPs~~~La~~~~vSr~tvr~ 52 (113)
T 3tqn_A 27 YVEGEMIPSIRKISTEYQINPLTVSK 52 (113)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHH
Confidence 35677 445899999999766543
No 54
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=33.31 E-value=41 Score=19.95 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.0
Q ss_pred cCCcHHHHHHHhCCCHHHHH-HHcC
Q 040730 112 WGESPSSVGSKFGVTMAELV-ATNG 135 (144)
Q Consensus 112 ~GdTl~~IA~~~~~s~~~l~-~~N~ 135 (144)
.++||...++.+|+++++|. ++|.
T Consensus 37 ~~~tLeeA~~~hgiD~d~ll~eLn~ 61 (76)
T 2k53_A 37 MGESIEDACAVHGIDADKLVKELNE 61 (76)
T ss_dssp CCSBHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHH
Confidence 47999999999999998775 5654
No 55
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=33.23 E-value=15 Score=23.91 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=16.2
Q ss_pred CCcHHHHHHHhCCCHHHHH
Q 040730 113 GESPSSVGSKFGVTMAELV 131 (144)
Q Consensus 113 GdTl~~IA~~~~~s~~~l~ 131 (144)
-++|..||..||++++.|.
T Consensus 59 ~~~l~~iA~~f~V~~~yl~ 77 (123)
T 3qwg_A 59 GATMAALANFFRIKAAYFT 77 (123)
T ss_dssp HHHHHHHHHHTTSCTHHHH
T ss_pred HHHHHHHHHHhCCCHHHHc
Confidence 3789999999999987664
No 56
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=33.11 E-value=23 Score=23.44 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.3
Q ss_pred eccCCcHHHHHHHhCC-CHHHHHHH
Q 040730 110 VQWGESPSSVGSKFGV-TMAELVAT 133 (144)
Q Consensus 110 V~~GdTl~~IA~~~~~-s~~~l~~~ 133 (144)
+..|.+|..|++.+|+ +...+.+|
T Consensus 25 i~~G~sl~~i~~~~~~ps~~T~~~W 49 (140)
T 4dyq_A 25 LSSGESLLKVCKRPGMPDKSTVFRW 49 (140)
T ss_dssp HHTTCCHHHHHTSTTCCCHHHHHHH
T ss_pred HHCCCcHHHHHhcCCCCCHHHHHHH
Confidence 5689999999999999 88888776
No 57
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=32.66 E-value=21 Score=23.49 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=22.8
Q ss_pred eccCCcHHHHHHHhCCCHHHHHHHcC
Q 040730 110 VQWGESPSSVGSKFGVTMAELVATNG 135 (144)
Q Consensus 110 V~~GdTl~~IA~~~~~s~~~l~~~N~ 135 (144)
+..|-|...||++.|+|...|.+.++
T Consensus 72 L~~G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 72 IKQGYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HHHTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 56799999999999999999977664
No 58
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=32.46 E-value=40 Score=20.10 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=18.8
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~ 132 (144)
-.|-|+..||+.+|++...+..
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~ 72 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKS 72 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 4689999999999999877754
No 59
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=32.04 E-value=16 Score=24.17 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=16.3
Q ss_pred CCcHHHHHHHhCCCHHHHH
Q 040730 113 GESPSSVGSKFGVTMAELV 131 (144)
Q Consensus 113 GdTl~~IA~~~~~s~~~l~ 131 (144)
-++|..||..|||+++.|.
T Consensus 61 ~~~l~~iA~~f~V~~~yl~ 79 (135)
T 3r1f_A 61 GATMAALANFFRIKAAYFT 79 (135)
T ss_dssp HHHHHHHHHHHTSCTHHHH
T ss_pred HHHHHHHHHHhCCCHHHHc
Confidence 4789999999999987765
No 60
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=32.04 E-value=46 Score=19.08 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.1
Q ss_pred eccCCcHHHHHHHhCCCHHHH
Q 040730 110 VQWGESPSSVGSKFGVTMAEL 130 (144)
Q Consensus 110 V~~GdTl~~IA~~~~~s~~~l 130 (144)
|+.|-|...+|..|+-+.+.-
T Consensus 15 ~~QGMTaGEVAA~f~w~Le~a 35 (68)
T 3i71_A 15 VRQGMTAGEVAAHFGWPLEKA 35 (68)
T ss_dssp CTTCBCHHHHHHHHTCCHHHH
T ss_pred HhccccHHHHHHHhCCcHHHH
Confidence 688999999999999997543
No 61
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=31.76 E-value=31 Score=21.89 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=17.6
Q ss_pred ccCCcHH-HHHHHhCCCHHHHHHH
Q 040730 111 QWGESPS-SVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~-~IA~~~~~s~~~l~~~ 133 (144)
..|.+.. .||+.||++...|..|
T Consensus 22 ~~g~~~~~~~A~~~gvs~stl~~~ 45 (131)
T 1hlv_A 22 ENPDLRKGEIARRFNIPPSTLSTI 45 (131)
T ss_dssp HCTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCcHHHHHHHhCCCHHHHHHH
Confidence 4566655 8999999998777655
No 62
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=30.77 E-value=45 Score=21.32 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.7
Q ss_pred eccCCcHHHHHHHh-CCCHHHHHHH
Q 040730 110 VQWGESPSSVGSKF-GVTMAELVAT 133 (144)
Q Consensus 110 V~~GdTl~~IA~~~-~~s~~~l~~~ 133 (144)
...|.|...|++.| +++.+++.++
T Consensus 61 l~~G~s~eeIl~~yP~Lt~edI~aA 85 (106)
T 2ga1_A 61 RQQGAPDKELLANYPGLTAEDLSAA 85 (106)
T ss_dssp HHTTCCHHHHHHHSTTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHCCCCCHHHHHHH
Confidence 46899999999999 9999888753
No 63
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=30.51 E-value=40 Score=20.90 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=18.5
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
+.+-|+..||+.+|+|...+.+.
T Consensus 18 ~~~~ti~dlA~~~gVS~~TVsR~ 40 (93)
T 2l0k_A 18 ETKKTVRVIAKEFGVSKSTVHKD 40 (93)
T ss_dssp HHCCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 33568999999999999888654
No 64
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=30.46 E-value=50 Score=17.62 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=17.9
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
+.|=|...+|++.|++...+.+|
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~ 34 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGI 34 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 45777788888888888887776
No 65
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=30.00 E-value=46 Score=22.77 Aligned_cols=24 Identities=8% Similarity=0.132 Sum_probs=21.3
Q ss_pred cCCcHHHHHHHhCCCHHHHHHHcC
Q 040730 112 WGESPSSVGSKFGVTMAELVATNG 135 (144)
Q Consensus 112 ~GdTl~~IA~~~~~s~~~l~~~N~ 135 (144)
.|-|+..||++.|++...|.+|-.
T Consensus 47 ~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 47 EKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHH
Confidence 367999999999999999999865
No 66
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=29.93 E-value=45 Score=19.01 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=15.4
Q ss_pred cHHHHHHHhCCCHHHHHHH
Q 040730 115 SPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 115 Tl~~IA~~~~~s~~~l~~~ 133 (144)
|+..||++-|++...+.++
T Consensus 2 T~~diA~~aGVS~sTVSrv 20 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYV 20 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 6788999999998877553
No 67
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=29.79 E-value=24 Score=20.57 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=17.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHH
Q 040730 113 GESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 113 GdTl~~IA~~~~~s~~~l~~~ 133 (144)
-+++..||+.||+++++|...
T Consensus 57 ~~~l~~ia~~l~v~~~~l~~~ 77 (86)
T 2ofy_A 57 FFTIAAVARVLDLSLDDVAAV 77 (86)
T ss_dssp HHHHHHHHHHTTCCHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHhcc
Confidence 377899999999999998754
No 68
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=29.27 E-value=40 Score=21.01 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=13.4
Q ss_pred cHHHHHHHhCCCHHHHH
Q 040730 115 SPSSVGSKFGVTMAELV 131 (144)
Q Consensus 115 Tl~~IA~~~~~s~~~l~ 131 (144)
+...||++||++...+.
T Consensus 45 s~~eLa~~lgVSr~tVr 61 (102)
T 2b0l_A 45 VASKIADRVGITRSVIV 61 (102)
T ss_dssp CHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHCcCHHHHH
Confidence 55689999999976664
No 69
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=28.86 E-value=44 Score=20.22 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=15.4
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 040730 114 ESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 114 dTl~~IA~~~~~s~~~l~~ 132 (144)
=++..+|+.|+++.+++.+
T Consensus 31 Isl~~La~ll~ls~~~vE~ 49 (84)
T 1ufm_A 31 ITFEELGALLEIPAAKAEK 49 (84)
T ss_dssp EEHHHHHHHTTSCHHHHHH
T ss_pred eeHHHHHHHHCcCHHHHHH
Confidence 3688999999999877644
No 70
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=27.99 E-value=50 Score=19.34 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCHHHHHHH
Q 040730 116 PSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 116 l~~IA~~~~~s~~~l~~~ 133 (144)
...+|+..|++...+.+|
T Consensus 13 ~~~lA~~lGVs~~aVs~W 30 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQW 30 (71)
T ss_dssp HHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHH
Confidence 678999999999999999
No 71
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=27.66 E-value=54 Score=20.97 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=16.4
Q ss_pred eccCCc---HHHHHHHhCCCHHHHHH
Q 040730 110 VQWGES---PSSVGSKFGVTMAELVA 132 (144)
Q Consensus 110 V~~GdT---l~~IA~~~~~s~~~l~~ 132 (144)
.++||- ...||++||++...+.+
T Consensus 31 ~~~g~~Lps~~~La~~~~vSr~tvr~ 56 (125)
T 3neu_A 31 WKGEDKLPSVREMGVKLAVNPNTVSR 56 (125)
T ss_dssp SCTTCBCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHCcCHHHHHH
Confidence 356764 44899999999766544
No 72
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=27.66 E-value=54 Score=20.80 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.8
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~ 132 (144)
-.|-|...||+.+|+|...+..
T Consensus 36 ~~g~s~~EIA~~lgiS~~tV~~ 57 (113)
T 1s7o_A 36 ADDYSLAEIADEFGVSRQAVYD 57 (113)
T ss_dssp HTCCCHHHHHHHHTCCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 4689999999999999877654
No 73
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=27.51 E-value=50 Score=17.76 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=17.5
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
+.|=|...+|++.|++...+.+|
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~ 38 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQW 38 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 45667788888888888777766
No 74
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=27.14 E-value=61 Score=18.05 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=11.6
Q ss_pred cCCcHHHHHHHhCCCHHHHHHH
Q 040730 112 WGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 112 ~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
.|=|...+|++.|++...|.++
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~ 40 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAM 40 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 3445555555555555555444
No 75
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=26.93 E-value=62 Score=17.90 Aligned_cols=25 Identities=4% Similarity=0.007 Sum_probs=20.1
Q ss_pred eccCCcHHHHHHHhCCCHHHHHHHc
Q 040730 110 VQWGESPSSVGSKFGVTMAELVATN 134 (144)
Q Consensus 110 V~~GdTl~~IA~~~~~s~~~l~~~N 134 (144)
-+.|=|...+|++.|++...+.+|=
T Consensus 20 ~~~g~s~~~lA~~~gis~~~i~~~e 44 (76)
T 3bs3_A 20 AEKQRTNRWLAEQMGKSENTISRWC 44 (76)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3567888899999999988887763
No 76
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=26.88 E-value=60 Score=18.50 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=13.1
Q ss_pred HHHHHHHhCCCHHHHHH
Q 040730 116 PSSVGSKFGVTMAELVA 132 (144)
Q Consensus 116 l~~IA~~~~~s~~~l~~ 132 (144)
+..+|++||++-++++.
T Consensus 28 I~~~a~kygV~kdeV~~ 44 (59)
T 2xvc_A 28 IEHFSKVYGVEKQEVVK 44 (59)
T ss_dssp HHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHH
Confidence 56789999999776643
No 77
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=26.82 E-value=33 Score=21.03 Aligned_cols=21 Identities=10% Similarity=-0.059 Sum_probs=18.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHH
Q 040730 113 GESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 113 GdTl~~IA~~~~~s~~~l~~~ 133 (144)
-+++..||+.||+++++|...
T Consensus 70 ~~~l~~ia~~l~v~~~~l~~~ 90 (99)
T 3g5g_A 70 IKSLELIMKGLEVSDVVFFEM 90 (99)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHhcc
Confidence 478999999999999988654
No 78
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=26.70 E-value=30 Score=21.44 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHcC
Q 040730 113 GESPSSVGSKFGVTMAELVATNG 135 (144)
Q Consensus 113 GdTl~~IA~~~~~s~~~l~~~N~ 135 (144)
-+++..||+.||++++.|.....
T Consensus 51 ~~~l~~la~~l~v~~~~l~~~~~ 73 (114)
T 3op9_A 51 IEKLIRLATYFHLSIDELVGYVQ 73 (114)
T ss_dssp HHHHHHHHHHHTCCHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCHHHHhcCCC
Confidence 48899999999999999976544
No 79
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=26.60 E-value=63 Score=17.53 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=14.0
Q ss_pred cCCcHHHHHHHhCCCHHHHHHH
Q 040730 112 WGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 112 ~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
.|=|...+|++.|++...+.+|
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~ 36 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLI 36 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHH
Confidence 4556666666666666666555
No 80
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=26.34 E-value=46 Score=20.54 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=15.4
Q ss_pred cHHHHHHHhCCCHHHHHHH
Q 040730 115 SPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 115 Tl~~IA~~~~~s~~~l~~~ 133 (144)
-+..+|+.||+++++|..-
T Consensus 6 I~~~Va~~f~i~~~dl~s~ 24 (94)
T 1j1v_A 6 IQKTVAEYYKIKVADLLSK 24 (94)
T ss_dssp HHHHHHHHTTCCHHHHHSC
T ss_pred HHHHHHHHhCCCHHHHhCC
Confidence 3567899999999999654
No 81
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=26.02 E-value=64 Score=19.46 Aligned_cols=22 Identities=5% Similarity=0.056 Sum_probs=19.0
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~ 132 (144)
-.|-|...||+..|++...+..
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~ 61 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKN 61 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 6899999999999999877643
No 82
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=25.88 E-value=51 Score=19.57 Aligned_cols=16 Identities=6% Similarity=0.326 Sum_probs=13.1
Q ss_pred cHHHHHHHhCCCHHHH
Q 040730 115 SPSSVGSKFGVTMAEL 130 (144)
Q Consensus 115 Tl~~IA~~~~~s~~~l 130 (144)
|+..||+.||+|...+
T Consensus 26 sv~EIa~~lgvS~~TV 41 (77)
T 2jt1_A 26 KTRDIADAAGLSIYQV 41 (77)
T ss_dssp EHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHCCCHHHH
Confidence 6889999999986554
No 83
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=25.72 E-value=57 Score=20.88 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=19.3
Q ss_pred eccCCcHHHHHHHhCCCHHHHHH
Q 040730 110 VQWGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 110 V~~GdTl~~IA~~~~~s~~~l~~ 132 (144)
.-.|-|+..||+.+|++...+..
T Consensus 121 ~~~g~s~~EIA~~lgis~~tV~~ 143 (164)
T 3mzy_A 121 LIRGYSYREIATILSKNLKSIDN 143 (164)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHH
Confidence 34799999999999999877754
No 84
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=25.62 E-value=68 Score=17.27 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=13.5
Q ss_pred cCCcHHHHHHHhCCCHHHHHHH
Q 040730 112 WGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 112 ~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
.|=|...+|++.|++...+.+|
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~ 34 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQL 34 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 4556666666666666666554
No 85
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=25.23 E-value=68 Score=19.15 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=18.1
Q ss_pred EEEEeccCCcHHHHHHHhCCC
Q 040730 106 KSYVVQWGESPSSVGSKFGVT 126 (144)
Q Consensus 106 ~~y~V~~GdTl~~IA~~~~~s 126 (144)
.++.+..|+||...+++.|+.
T Consensus 13 ~~~~~~~g~tlL~a~~~~gi~ 33 (95)
T 1frr_A 13 FTLDVPEGTTILDAAEEAGYD 33 (95)
T ss_dssp EEEEECTTCCHHHHHHHTTCC
T ss_pred EEEEeCCCCcHHHHHHHcCCC
Confidence 467889999999999998875
No 86
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=25.15 E-value=69 Score=18.30 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=18.9
Q ss_pred EEeccCCcHHHHHHHhCCCHHHHHHHc
Q 040730 108 YVVQWGESPSSVGSKFGVTMAELVATN 134 (144)
Q Consensus 108 y~V~~GdTl~~IA~~~~~s~~~l~~~N 134 (144)
+..+.|=|...+|++.|++...|.+|=
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~E 44 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSIE 44 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 445667777777777777777776663
No 87
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=25.00 E-value=55 Score=21.37 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=15.9
Q ss_pred cCCcHHHHHHHhCCCHHHHH
Q 040730 112 WGESPSSVGSKFGVTMAELV 131 (144)
Q Consensus 112 ~GdTl~~IA~~~~~s~~~l~ 131 (144)
..+-+..||++|++|...+.
T Consensus 47 tK~LYp~IA~k~~TT~s~VE 66 (120)
T 1fc3_A 47 TKVLYPDIAKKYNTTASRVE 66 (120)
T ss_dssp TTTHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHH
Confidence 35778899999999986653
No 88
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=24.98 E-value=58 Score=18.63 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=17.1
Q ss_pred CcHHHHHHHhCCCHHHHHHH
Q 040730 114 ESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 114 dTl~~IA~~~~~s~~~l~~~ 133 (144)
-|+..||++-|++...+-.+
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ 29 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRA 29 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHH
Confidence 48999999999999888665
No 89
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=24.84 E-value=47 Score=21.45 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=16.4
Q ss_pred eccCCcH---HHHHHHhCCCHHHHHH
Q 040730 110 VQWGESP---SSVGSKFGVTMAELVA 132 (144)
Q Consensus 110 V~~GdTl---~~IA~~~~~s~~~l~~ 132 (144)
.++||-| ..+|++||++...+.+
T Consensus 32 l~pG~~LPser~La~~~gVSr~tVRe 57 (134)
T 4ham_A 32 LQEGEKILSIREFASRIGVNPNTVSK 57 (134)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCccHHHHHHHHCCCHHHHHH
Confidence 4566655 4799999999766544
No 90
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=24.52 E-value=69 Score=19.33 Aligned_cols=21 Identities=5% Similarity=0.006 Sum_probs=18.1
Q ss_pred EEEEeccCCcHHHHHHHhCCC
Q 040730 106 KSYVVQWGESPSSVGSKFGVT 126 (144)
Q Consensus 106 ~~y~V~~GdTl~~IA~~~~~s 126 (144)
.++.|..|+||...+++.|+.
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi~ 36 (98)
T 1frd_A 16 TTIEIDEETTILDGAEENGIE 36 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCC
T ss_pred EEEEeCCCCcHHHHHHHcCCC
Confidence 467889999999999998875
No 91
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=24.26 E-value=75 Score=17.36 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=19.3
Q ss_pred eccCCcHHHHHHHhCCCHHHHHHH
Q 040730 110 VQWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 110 V~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
-+.|=|...+|++.|++...+.+|
T Consensus 23 ~~~g~s~~~lA~~~gis~~~i~~~ 46 (74)
T 1y7y_A 23 TAKGLSQETLAFLSGLDRSYVGGV 46 (74)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 346778888999999988888776
No 92
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=24.22 E-value=40 Score=20.57 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=18.7
Q ss_pred eccCC---cHHHHHHHhCCCHHHHH-HHcCC
Q 040730 110 VQWGE---SPSSVGSKFGVTMAELV-ATNGL 136 (144)
Q Consensus 110 V~~Gd---Tl~~IA~~~~~s~~~l~-~~N~l 136 (144)
.++|+ +...||++||+|...+. .+..|
T Consensus 29 l~~g~~lps~~eLa~~~~vSr~tvr~al~~L 59 (102)
T 1v4r_A 29 LAPGDTLPSVADIRAQFGVAAKTVSRALAVL 59 (102)
T ss_dssp CCTTSBCCCHHHHHHHSSSCTTHHHHHTTTT
T ss_pred CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34566 56799999999877665 34444
No 93
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=24.18 E-value=75 Score=17.58 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=14.9
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
+.|=|...+|++.|++...+.+|
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~ 43 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEV 43 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 34666667777777776666655
No 94
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=24.09 E-value=70 Score=20.15 Aligned_cols=22 Identities=18% Similarity=0.136 Sum_probs=18.6
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~ 132 (144)
-.|-|...||+.+|++...+..
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~ 60 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYD 60 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 4689999999999999877653
No 95
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=24.05 E-value=18 Score=23.32 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=29.5
Q ss_pred EEeccCCcHHHHHHHhCCCHHHHHHHcCCCCCCc
Q 040730 108 YVVQWGESPSSVGSKFGVTMAELVATNGLSQSVV 141 (144)
Q Consensus 108 y~V~~GdTl~~IA~~~~~s~~~l~~~N~l~~~~i 141 (144)
|.|=..+||..||++.=.+.++|.++.++....+
T Consensus 44 y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~ 77 (113)
T 2dgz_A 44 AILATNKILVDMAKMRPTTVENVKRIDGVSEGKA 77 (113)
T ss_dssp HHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTGG
T ss_pred CeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHHH
Confidence 5666789999999999999999999999976654
No 96
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=23.99 E-value=64 Score=21.87 Aligned_cols=23 Identities=13% Similarity=0.227 Sum_probs=19.8
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
..|.++..||+.+|++...+.++
T Consensus 156 ~~G~s~~~Ia~~l~is~~tv~r~ 178 (183)
T 1gdt_A 156 QQGLGASHISKTMNIARSTVYKV 178 (183)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999998887654
No 97
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=23.98 E-value=73 Score=19.67 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=18.6
Q ss_pred EEEEeccCCcHHHHHHHhCCCH
Q 040730 106 KSYVVQWGESPSSVGSKFGVTM 127 (144)
Q Consensus 106 ~~y~V~~GdTl~~IA~~~~~s~ 127 (144)
.+..+..|+||-..|.+.|+.+
T Consensus 19 ~~v~~~~g~tLL~aa~~~gi~i 40 (108)
T 2bt6_A 19 LTTKGKIGDSLLDVVVQNNLDI 40 (108)
T ss_dssp EEEEEETTCBHHHHHHHTTCCC
T ss_pred EEEEECCCChHHHHHHHcCCCC
Confidence 3567889999999999999864
No 98
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=23.84 E-value=74 Score=19.22 Aligned_cols=21 Identities=5% Similarity=0.020 Sum_probs=18.0
Q ss_pred EEEEeccCCcHHHHHHHhCCC
Q 040730 106 KSYVVQWGESPSSVGSKFGVT 126 (144)
Q Consensus 106 ~~y~V~~GdTl~~IA~~~~~s 126 (144)
.++.+..|+||-..+++.|+.
T Consensus 17 ~~~~~~~g~tlL~a~~~~gi~ 37 (98)
T 1jq4_A 17 LRFECRSDEDVITAALRQNIF 37 (98)
T ss_dssp EEEEEESCCTHHHHHHHHTCC
T ss_pred EEEEeCCCChHHHHHHHcCCC
Confidence 467789999999999998875
No 99
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=23.75 E-value=58 Score=19.32 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.0
Q ss_pred ccCCcHHHHHHHhCCCHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~ 132 (144)
-.|-|...||+.+|++...+..
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~ 63 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKT 63 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 6799999999999999877653
No 100
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=23.70 E-value=52 Score=18.60 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=12.6
Q ss_pred HHHHHhCCCHHHHHHH
Q 040730 118 SVGSKFGVTMAELVAT 133 (144)
Q Consensus 118 ~IA~~~~~s~~~l~~~ 133 (144)
.-|++.|.+.++|.++
T Consensus 20 ~~Ak~lGlsleEIref 35 (57)
T 1b0n_B 20 VEAKEANISPEEIRKY 35 (57)
T ss_dssp HHHHHTTCCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHH
Confidence 4578999998888764
No 101
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=23.58 E-value=64 Score=17.81 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=12.4
Q ss_pred cCCcHHHHHHHhCCCHHHHHHH
Q 040730 112 WGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 112 ~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
.|=|...+|++.|++...|.+|
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~ 38 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQW 38 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 3455556666666665555554
No 102
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=23.57 E-value=58 Score=17.96 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=18.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHc
Q 040730 113 GESPSSVGSKFGVTMAELVATN 134 (144)
Q Consensus 113 GdTl~~IA~~~~~s~~~l~~~N 134 (144)
+-|-..+|++.|++...+.+|-
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 3477899999999999998884
No 103
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=23.55 E-value=65 Score=18.18 Aligned_cols=18 Identities=17% Similarity=-0.046 Sum_probs=14.3
Q ss_pred CcHHHHHHHhCCCHHHHH
Q 040730 114 ESPSSVGSKFGVTMAELV 131 (144)
Q Consensus 114 dTl~~IA~~~~~s~~~l~ 131 (144)
=++..||+++|++...+.
T Consensus 26 ~s~~eLA~~lglsr~tv~ 43 (67)
T 2heo_A 26 VAIFQLVKKCQVPKKTLN 43 (67)
T ss_dssp EEHHHHHHHHCSCHHHHH
T ss_pred cCHHHHHHHHCcCHHHHH
Confidence 478899999999976654
No 104
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=23.37 E-value=68 Score=17.77 Aligned_cols=26 Identities=4% Similarity=-0.045 Sum_probs=20.1
Q ss_pred eccCCcHHHHHHHhCCCHHHHHHHcC
Q 040730 110 VQWGESPSSVGSKFGVTMAELVATNG 135 (144)
Q Consensus 110 V~~GdTl~~IA~~~~~s~~~l~~~N~ 135 (144)
.+.|=|...+|++.|++...+.+|=+
T Consensus 18 ~~~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 18 AEKGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35678888888888888888877643
No 105
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=23.35 E-value=69 Score=18.99 Aligned_cols=26 Identities=15% Similarity=0.044 Sum_probs=21.5
Q ss_pred ccCCcHHHHHHHhCCCHHHHH-HHcCC
Q 040730 111 QWGESPSSVGSKFGVTMAELV-ATNGL 136 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~-~~N~l 136 (144)
...+||...|+++|+++++|. ++|.+
T Consensus 47 g~~~TL~~aa~~~gid~d~l~~~L~~~ 73 (81)
T 2fi0_A 47 GRKVSLKQGSKLAGTPMDKIVRTLEAN 73 (81)
T ss_dssp HHHCBHHHHHHHHTCCHHHHHHHHHHT
T ss_pred cccCcHHHHHHHcCCCHHHHHHHHHHc
Confidence 457999999999999999876 66654
No 106
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=23.35 E-value=55 Score=20.52 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=17.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHc
Q 040730 113 GESPSSVGSKFGVTMAELVATN 134 (144)
Q Consensus 113 GdTl~~IA~~~~~s~~~l~~~N 134 (144)
.+-+..+|+.||+++++|..-.
T Consensus 8 ~~I~~~Va~~f~v~~~dl~s~~ 29 (101)
T 3pvv_A 8 ATIMAATAEYFDTTVEELRGPG 29 (101)
T ss_dssp HHHHHHHHHHTTCCHHHHHSSC
T ss_pred HHHHHHHHHHHCCCHHHHhCCC
Confidence 4456788999999999997544
No 107
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=23.34 E-value=78 Score=19.31 Aligned_cols=22 Identities=9% Similarity=-0.009 Sum_probs=18.4
Q ss_pred EEEEeccCCcHHHHHHHhCCCH
Q 040730 106 KSYVVQWGESPSSVGSKFGVTM 127 (144)
Q Consensus 106 ~~y~V~~GdTl~~IA~~~~~s~ 127 (144)
.++.+..|+||...+++.|+.+
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi~i 37 (103)
T 2wlb_A 16 IMIEGNEGDSILDLAHANNIDL 37 (103)
T ss_dssp EEEEECTTCBHHHHHHHTTCCC
T ss_pred EEEEECCCCHHHHHHHHcCCCc
Confidence 4577899999999999988753
No 108
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=22.89 E-value=45 Score=20.75 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=17.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHH
Q 040730 113 GESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 113 GdTl~~IA~~~~~s~~~l~~~ 133 (144)
-|++..||+.||++++.+...
T Consensus 56 ~~~~~kla~~lgvs~~~ll~~ 76 (104)
T 3trb_A 56 ADTALRLAKFFGTTPEFWLNL 76 (104)
T ss_dssp HHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHhCC
Confidence 478899999999999877643
No 109
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=22.88 E-value=79 Score=18.63 Aligned_cols=16 Identities=13% Similarity=0.470 Sum_probs=7.7
Q ss_pred HHHHHHhCCCHHHHHH
Q 040730 117 SSVGSKFGVTMAELVA 132 (144)
Q Consensus 117 ~~IA~~~~~s~~~l~~ 132 (144)
..||+.||++++.|..
T Consensus 55 ~~ia~~l~v~~~~l~~ 70 (94)
T 2kpj_A 55 QALADYFNINKSDLIE 70 (94)
T ss_dssp HHHHHHHTCCTHHHHS
T ss_pred HHHHHHHCcCHHHHhc
Confidence 3444555555554443
No 110
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=22.60 E-value=84 Score=18.09 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=20.0
Q ss_pred eccCCcHHHHHHHhCCCHHHHHHHc
Q 040730 110 VQWGESPSSVGSKFGVTMAELVATN 134 (144)
Q Consensus 110 V~~GdTl~~IA~~~~~s~~~l~~~N 134 (144)
-+.|=|...+|++.|++...|.++=
T Consensus 28 ~~~glsq~elA~~~gis~~~is~~e 52 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDLM 52 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3568888899999999988887763
No 111
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=21.32 E-value=77 Score=18.84 Aligned_cols=16 Identities=6% Similarity=0.165 Sum_probs=12.8
Q ss_pred cHHHHHHHhCCCHHHH
Q 040730 115 SPSSVGSKFGVTMAEL 130 (144)
Q Consensus 115 Tl~~IA~~~~~s~~~l 130 (144)
.|..+|..|+++.++.
T Consensus 23 ~LedLA~~F~l~t~~~ 38 (72)
T 1wi9_A 23 LLEDLAFQMGLRTQDA 38 (72)
T ss_dssp CHHHHHHHHCSCHHHH
T ss_pred eHHHHHHHhCCChHHH
Confidence 5789999999986544
No 112
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=21.25 E-value=77 Score=22.02 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.3
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
..|.++..||+.+|++...+.++
T Consensus 173 ~~G~s~~~Ia~~l~is~~tv~r~ 195 (209)
T 2r0q_C 173 EEGQAISKIAKEVNITRQTVYRI 195 (209)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 47999999999999999888765
No 113
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=20.81 E-value=94 Score=17.56 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=13.1
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
+.|=|...+|++.|++...|.+|
T Consensus 22 ~~glsq~~lA~~~gis~~~i~~~ 44 (82)
T 3s8q_A 22 EKGMTQEDLAYKSNLDRTYISGI 44 (82)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHH
Confidence 34555556666666665555554
No 114
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=20.74 E-value=49 Score=20.49 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.2
Q ss_pred CCcHHHHHHHhCCCHHHHHH
Q 040730 113 GESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 113 GdTl~~IA~~~~~s~~~l~~ 132 (144)
-+++..||+.||+++++|..
T Consensus 70 ~~~l~~la~~l~v~~~~l~~ 89 (117)
T 3f52_A 70 SELLASVCHALGASVADVLI 89 (117)
T ss_dssp HHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHh
Confidence 47899999999999988764
No 115
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=20.72 E-value=91 Score=18.80 Aligned_cols=21 Identities=5% Similarity=-0.051 Sum_probs=18.1
Q ss_pred EEEEeccCCcHHHHHHHhCCC
Q 040730 106 KSYVVQWGESPSSVGSKFGVT 126 (144)
Q Consensus 106 ~~y~V~~GdTl~~IA~~~~~s 126 (144)
.++.+..|+||...+++.|+.
T Consensus 14 ~~~~~~~g~tlL~a~~~~gi~ 34 (97)
T 1a70_A 14 VEFQCPDDVYILDAAEEEGID 34 (97)
T ss_dssp EEEEEETTSCHHHHHHHTTCC
T ss_pred EEEEeCCCCcHHHHHHHcCCC
Confidence 467789999999999998875
No 116
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=20.68 E-value=87 Score=19.38 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=17.5
Q ss_pred cCCcHHHHHHHhCCCHHHHHH
Q 040730 112 WGESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 112 ~GdTl~~IA~~~~~s~~~l~~ 132 (144)
.|-|+..||+.+|+|...+..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~ 58 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQ 58 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHH
Confidence 578999999999999876643
No 117
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=20.65 E-value=80 Score=18.95 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=14.7
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 040730 114 ESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 114 dTl~~IA~~~~~s~~~l~~ 132 (144)
=++..||+.+|++...|.+
T Consensus 20 ~~~~~lA~~~~~S~~~l~r 38 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSI 38 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 4788899999888776643
No 118
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=20.62 E-value=89 Score=18.68 Aligned_cols=20 Identities=5% Similarity=0.252 Sum_probs=15.5
Q ss_pred ccCC--cHHHHHHHhCCCHHHH
Q 040730 111 QWGE--SPSSVGSKFGVTMAEL 130 (144)
Q Consensus 111 ~~Gd--Tl~~IA~~~~~s~~~l 130 (144)
..|| |.-.||+++|++-..+
T Consensus 25 ~~~~~~Ta~~IAkkLg~sK~~v 46 (75)
T 1sfu_A 25 NTNDYTTAISLSNRLKINKKKI 46 (75)
T ss_dssp CTTCEECHHHHHHHTTCCHHHH
T ss_pred CCCcchHHHHHHHHHCCCHHHH
Confidence 3455 8889999999997554
No 119
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=20.54 E-value=80 Score=17.91 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=20.9
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH-cCCC
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT-NGLS 137 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~-N~l~ 137 (144)
+.|=|...+|++.|++...+.+| |+..
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHcCCC
Confidence 45778888999999998888886 4443
No 120
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=20.53 E-value=89 Score=19.14 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=18.3
Q ss_pred EEEEeccCCcHHHHHHHhCCC
Q 040730 106 KSYVVQWGESPSSVGSKFGVT 126 (144)
Q Consensus 106 ~~y~V~~GdTl~~IA~~~~~s 126 (144)
.+..+..|+||-..|.+.|+.
T Consensus 13 ~~~~~~~g~tlLeaa~~~gi~ 33 (106)
T 1xlq_A 13 RELDVADGVSLMQAAVSNGIY 33 (106)
T ss_dssp EEEECCTTCBHHHHHHHTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 457789999999999999886
No 121
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.32 E-value=79 Score=19.15 Aligned_cols=19 Identities=5% Similarity=0.088 Sum_probs=14.9
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 040730 114 ESPSSVGSKFGVTMAELVA 132 (144)
Q Consensus 114 dTl~~IA~~~~~s~~~l~~ 132 (144)
=++..||+.+|++...|.+
T Consensus 19 ~~~~~lA~~~~~s~~~l~r 37 (108)
T 3mn2_A 19 ITIEKLTALTGISSRGIFK 37 (108)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHH
Confidence 4788899999988776644
No 122
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=20.29 E-value=96 Score=19.16 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=17.7
Q ss_pred EEEeccCCcHHHHHHHhCCCH
Q 040730 107 SYVVQWGESPSSVGSKFGVTM 127 (144)
Q Consensus 107 ~y~V~~GdTl~~IA~~~~~s~ 127 (144)
+..+..|+||-..|.+.|+.+
T Consensus 19 ~~~~~~g~tlL~aa~~~gi~i 39 (109)
T 2y5c_A 19 PVSGRVGDNVLHLAQRHGVDL 39 (109)
T ss_dssp EEEEETTCBHHHHHHHTTCCC
T ss_pred EEEECCCCcHHHHHHHcCCCC
Confidence 466889999999999998753
No 123
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=20.16 E-value=99 Score=17.38 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=14.3
Q ss_pred ccCCcHHHHHHHhCCCHHHHHHH
Q 040730 111 QWGESPSSVGSKFGVTMAELVAT 133 (144)
Q Consensus 111 ~~GdTl~~IA~~~~~s~~~l~~~ 133 (144)
+.|=|...+|++.|++...|.+|
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~ 43 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKI 43 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Confidence 34556666666666666666554
No 124
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=20.06 E-value=98 Score=18.53 Aligned_cols=27 Identities=7% Similarity=0.174 Sum_probs=22.1
Q ss_pred EeccCCcHHHHHHHhCCCHHHHHHHcC
Q 040730 109 VVQWGESPSSVGSKFGVTMAELVATNG 135 (144)
Q Consensus 109 ~V~~GdTl~~IA~~~~~s~~~l~~~N~ 135 (144)
..+.|=|...+|++.|++...|.++=+
T Consensus 33 R~~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 33 LIDRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 356789999999999999888877744
Done!