Query 040731
Match_columns 111
No_of_seqs 125 out of 1418
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 11:12:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0723 Molecular chaperone (D 99.9 5.1E-25 1.1E-29 145.4 11.7 105 1-105 2-110 (112)
2 PTZ00100 DnaJ chaperone protei 99.9 3.5E-24 7.5E-29 144.4 12.6 99 3-102 4-116 (116)
3 PF03656 Pam16: Pam16; InterP 99.9 3.2E-22 7E-27 136.9 6.3 104 1-104 2-111 (127)
4 COG0484 DnaJ DnaJ-class molecu 99.7 2.3E-18 5E-23 135.2 4.9 61 48-108 1-65 (371)
5 KOG3442 Uncharacterized conser 99.7 3.1E-16 6.6E-21 106.1 8.6 104 2-105 2-113 (132)
6 PTZ00037 DnaJ_C chaperone prot 99.7 7.6E-17 1.6E-21 128.9 5.9 63 45-107 22-84 (421)
7 KOG0713 Molecular chaperone (D 99.7 5.8E-17 1.3E-21 125.3 4.6 61 47-107 12-76 (336)
8 PHA03102 Small T antigen; Revi 99.7 2E-16 4.4E-21 111.4 6.1 60 49-108 3-64 (153)
9 smart00271 DnaJ DnaJ molecular 99.6 6.7E-16 1.5E-20 91.8 6.1 54 52-105 2-60 (60)
10 cd06257 DnaJ DnaJ domain or J- 99.6 1.4E-15 3E-20 88.9 5.8 51 52-102 1-55 (55)
11 PRK14296 chaperone protein Dna 99.6 6.4E-16 1.4E-20 121.8 5.2 60 48-107 1-63 (372)
12 PF00226 DnaJ: DnaJ domain; I 99.6 2.5E-15 5.5E-20 90.6 5.3 55 52-106 1-60 (64)
13 PRK14279 chaperone protein Dna 99.6 2.4E-15 5.1E-20 119.3 5.7 58 50-107 8-69 (392)
14 PRK14288 chaperone protein Dna 99.6 1.9E-15 4.1E-20 119.0 4.5 57 51-107 3-63 (369)
15 PRK14286 chaperone protein Dna 99.6 2.3E-15 5E-20 118.6 4.8 60 48-107 1-64 (372)
16 PRK14282 chaperone protein Dna 99.6 4.3E-15 9.4E-20 116.9 5.2 60 48-107 1-65 (369)
17 PRK14287 chaperone protein Dna 99.5 5.6E-15 1.2E-19 116.4 5.5 60 48-107 1-63 (371)
18 PRK14299 chaperone protein Dna 99.5 5.5E-15 1.2E-19 113.1 4.8 59 48-106 1-62 (291)
19 PRK14285 chaperone protein Dna 99.5 9.1E-15 2E-19 115.0 5.5 57 51-107 3-63 (365)
20 PRK14276 chaperone protein Dna 99.5 1.1E-14 2.3E-19 115.1 5.6 60 48-107 1-63 (380)
21 PRK10767 chaperone protein Dna 99.5 1.2E-14 2.5E-19 114.5 5.1 60 48-107 1-64 (371)
22 PRK14301 chaperone protein Dna 99.5 1.4E-14 3.1E-19 114.2 5.3 60 48-107 1-64 (373)
23 PRK14295 chaperone protein Dna 99.5 1.6E-14 3.4E-19 114.6 5.4 58 50-107 8-69 (389)
24 PRK14280 chaperone protein Dna 99.5 1.3E-14 2.9E-19 114.4 5.0 60 48-107 1-63 (376)
25 PRK14294 chaperone protein Dna 99.5 1.3E-14 2.9E-19 114.0 4.9 60 48-107 1-64 (366)
26 PRK14283 chaperone protein Dna 99.5 1.4E-14 3E-19 114.4 4.9 60 48-107 2-64 (378)
27 PRK14298 chaperone protein Dna 99.5 1.9E-14 4.1E-19 113.7 5.6 58 50-107 4-64 (377)
28 PRK14297 chaperone protein Dna 99.5 1.9E-14 4.1E-19 113.6 5.6 60 48-107 1-64 (380)
29 PRK14278 chaperone protein Dna 99.5 1.6E-14 3.4E-19 114.1 4.7 57 51-107 3-62 (378)
30 PRK14281 chaperone protein Dna 99.5 2.4E-14 5.1E-19 113.7 5.2 57 51-107 3-63 (397)
31 PRK14277 chaperone protein Dna 99.5 2.5E-14 5.4E-19 113.2 4.9 57 51-107 5-65 (386)
32 KOG0712 Molecular chaperone (D 99.5 2.1E-14 4.5E-19 111.8 4.2 57 51-107 4-61 (337)
33 PRK10266 curved DNA-binding pr 99.5 2.7E-14 5.9E-19 109.9 4.9 59 48-106 1-62 (306)
34 KOG0721 Molecular chaperone (D 99.5 1.7E-13 3.7E-18 100.8 8.8 60 47-106 95-158 (230)
35 PRK14291 chaperone protein Dna 99.5 6.1E-14 1.3E-18 110.9 5.5 57 51-107 3-62 (382)
36 PRK14300 chaperone protein Dna 99.5 8.4E-14 1.8E-18 109.8 5.7 57 51-107 3-62 (372)
37 PRK14290 chaperone protein Dna 99.4 1.1E-13 2.3E-18 108.9 5.5 57 51-107 3-64 (365)
38 PHA02624 large T antigen; Prov 99.4 1.6E-13 3.4E-18 113.7 6.4 59 50-108 10-70 (647)
39 KOG0716 Molecular chaperone (D 99.4 1.8E-13 3.9E-18 103.4 6.0 58 50-107 30-91 (279)
40 PRK14284 chaperone protein Dna 99.4 1.4E-13 3.1E-18 109.1 5.3 56 52-107 2-61 (391)
41 PRK09430 djlA Dna-J like membr 99.4 3.7E-13 7.9E-18 102.2 7.1 58 46-103 195-263 (267)
42 PRK14289 chaperone protein Dna 99.4 1.4E-13 3E-18 108.9 5.0 59 49-107 3-65 (386)
43 TIGR02349 DnaJ_bact chaperone 99.4 1.8E-13 3.9E-18 107.0 5.1 56 52-107 1-59 (354)
44 KOG0717 Molecular chaperone (D 99.4 2.6E-13 5.5E-18 108.7 6.0 61 47-107 4-69 (508)
45 KOG0715 Molecular chaperone (D 99.4 1.9E-13 4.2E-18 104.8 4.5 62 46-107 38-102 (288)
46 PRK14292 chaperone protein Dna 99.4 4.1E-13 8.9E-18 105.7 6.3 57 51-107 2-61 (371)
47 KOG0718 Molecular chaperone (D 99.3 1.9E-12 4.2E-17 104.0 6.4 60 48-107 6-72 (546)
48 PRK14293 chaperone protein Dna 99.3 1.1E-12 2.4E-17 103.5 4.7 57 51-107 3-62 (374)
49 KOG0691 Molecular chaperone (D 99.3 3.1E-12 6.8E-17 98.3 5.1 58 50-107 4-65 (296)
50 COG2214 CbpA DnaJ-class molecu 99.3 4.5E-12 9.8E-17 89.8 5.5 59 49-107 4-67 (237)
51 PTZ00341 Ring-infected erythro 99.3 4.4E-12 9.6E-17 109.0 5.0 61 47-107 569-632 (1136)
52 KOG0719 Molecular chaperone (D 99.2 6.1E-12 1.3E-16 93.7 3.7 58 50-107 13-76 (264)
53 PRK05014 hscB co-chaperone Hsc 99.2 1.7E-11 3.7E-16 87.7 5.5 56 52-107 2-68 (171)
54 TIGR03835 termin_org_DnaJ term 99.2 1.2E-11 2.6E-16 104.3 5.0 57 51-107 2-61 (871)
55 PRK01356 hscB co-chaperone Hsc 99.2 1.8E-11 3.8E-16 87.3 4.6 57 51-107 2-67 (166)
56 PRK00294 hscB co-chaperone Hsc 99.2 4E-11 8.6E-16 86.1 5.2 60 48-107 1-71 (173)
57 PRK03578 hscB co-chaperone Hsc 99.2 4.9E-11 1.1E-15 85.8 5.5 57 51-107 6-73 (176)
58 KOG1789 Endocytosis protein RM 99.1 2.7E-10 5.9E-15 99.0 9.2 74 16-102 1259-1337(2235)
59 KOG0722 Molecular chaperone (D 99.0 1.4E-10 3E-15 87.8 2.8 58 50-107 32-92 (329)
60 KOG0720 Molecular chaperone (D 99.0 3.3E-10 7.1E-15 91.0 4.3 58 50-107 234-294 (490)
61 KOG0624 dsRNA-activated protei 99.0 4E-10 8.6E-15 88.9 4.4 62 47-108 390-458 (504)
62 PRK01773 hscB co-chaperone Hsc 98.9 1.9E-09 4.1E-14 77.4 5.0 57 51-107 2-69 (173)
63 COG5407 SEC63 Preprotein trans 98.8 8.2E-09 1.8E-13 83.3 6.2 56 51-106 98-162 (610)
64 KOG0550 Molecular chaperone (D 98.7 7.9E-09 1.7E-13 82.7 3.7 59 50-108 372-435 (486)
65 KOG0714 Molecular chaperone (D 98.7 1.2E-08 2.5E-13 75.6 3.4 58 51-108 3-65 (306)
66 TIGR00714 hscB Fe-S protein as 98.7 2.4E-08 5.1E-13 70.6 4.7 46 62-107 2-56 (157)
67 KOG1150 Predicted molecular ch 98.7 3.4E-08 7.3E-13 72.6 4.6 53 52-104 54-111 (250)
68 KOG0568 Molecular chaperone (D 98.4 1.1E-06 2.3E-11 66.3 6.3 52 50-101 46-101 (342)
69 COG5269 ZUO1 Ribosome-associat 98.1 4.1E-06 9E-11 64.3 4.2 58 51-108 43-109 (379)
70 COG1076 DjlA DnaJ-domain-conta 97.6 0.0001 2.2E-09 52.7 3.9 50 51-100 113-173 (174)
71 PF13446 RPT: A repeated domai 97.2 0.0021 4.7E-08 38.3 6.4 48 47-101 1-48 (62)
72 KOG3192 Mitochondrial J-type c 97.0 0.00097 2.1E-08 47.3 3.6 59 49-107 6-75 (168)
73 KOG0431 Auxilin-like protein a 96.5 0.0037 8.1E-08 51.0 4.2 24 60-83 397-420 (453)
74 PF11833 DUF3353: Protein of u 95.2 0.053 1.1E-06 39.7 5.1 40 60-103 1-40 (194)
75 COG1076 DjlA DnaJ-domain-conta 92.6 0.05 1.1E-06 38.8 0.9 43 64-106 16-67 (174)
76 PF14687 DUF4460: Domain of un 89.7 0.44 9.4E-06 32.0 3.1 42 63-104 6-55 (112)
77 KOG0724 Zuotin and related mol 69.0 7.5 0.00016 30.0 3.8 42 63-104 4-53 (335)
78 PF03820 Mtc: Tricarboxylate c 59.8 12 0.00026 29.3 3.3 39 46-84 25-69 (308)
79 PF03206 NifW: Nitrogen fixati 52.4 66 0.0014 21.3 6.6 57 47-103 11-77 (105)
80 COG5552 Uncharacterized conser 51.0 61 0.0013 20.4 5.4 30 54-83 6-39 (88)
81 PF11300 DUF3102: Protein of u 46.5 46 0.001 22.9 4.2 16 47-62 89-104 (130)
82 PF13543 KSR1-SAM: SAM like do 45.8 97 0.0021 21.3 9.9 85 3-100 27-128 (129)
83 PF12669 P12: Virus attachment 45.5 32 0.00069 20.2 2.9 21 6-26 5-26 (58)
84 PF02529 PetG: Cytochrome B6-F 43.1 55 0.0012 17.7 4.1 30 2-31 3-33 (37)
85 PRK00810 nifW nitrogenase stab 41.9 1.1E+02 0.0023 20.6 5.6 55 47-102 15-79 (113)
86 PF08447 PAS_3: PAS fold; Int 40.2 15 0.00032 21.8 0.9 28 51-82 6-34 (91)
87 TIGR03759 conj_TIGR03759 integ 39.3 33 0.00071 25.4 2.7 48 52-101 38-86 (200)
88 PF13940 Ldr_toxin: Toxin Ldr, 37.2 31 0.00066 18.3 1.7 11 1-11 15-25 (35)
89 PF12728 HTH_17: Helix-turn-he 36.2 28 0.00062 19.0 1.6 15 48-62 2-16 (51)
90 KOG3767 Sideroflexin [General 36.0 44 0.00094 26.5 3.1 62 47-108 44-141 (328)
91 PF07709 SRR: Seven Residue Re 36.0 36 0.00079 14.1 1.6 12 90-101 3-14 (14)
92 PF13955 Fst_toxin: Toxin Fst, 36.0 39 0.00084 16.0 1.8 11 2-12 6-16 (21)
93 PRK00665 petG cytochrome b6-f 34.6 79 0.0017 17.0 3.9 28 3-30 4-32 (37)
94 KOG1573 Aldehyde reductase [Ge 33.7 69 0.0015 23.3 3.5 38 46-83 71-115 (204)
95 CHL00008 petG cytochrome b6/f 33.1 85 0.0018 16.9 3.9 29 3-31 4-33 (37)
96 TIGR00824 EIIA-man PTS system, 32.4 1.1E+02 0.0023 20.0 4.2 37 54-90 30-75 (116)
97 PF01466 Skp1: Skp1 family, di 32.2 63 0.0014 19.6 2.9 24 47-70 45-68 (78)
98 TIGR01764 excise DNA binding d 30.3 43 0.00092 17.5 1.7 15 48-62 2-16 (49)
99 COG2879 Uncharacterized small 29.4 45 0.00098 20.2 1.7 18 70-87 26-43 (65)
100 KOG2320 RAS effector RIN1 (con 27.4 90 0.0019 27.0 3.7 42 56-102 394-435 (651)
101 COG2920 DsrC Dissimilatory sul 27.1 1.6E+02 0.0035 19.6 4.2 36 51-91 53-88 (111)
102 COG5538 SEC66 Endoplasmic reti 27.1 2.4E+02 0.0053 20.3 7.0 64 2-72 6-69 (180)
103 KOG4699 Preprotein translocase 27.1 2.4E+02 0.0053 20.3 7.0 64 2-72 6-69 (180)
104 PF14893 PNMA: PNMA 26.5 62 0.0013 25.6 2.5 28 47-74 14-41 (331)
105 PRK09649 RNA polymerase sigma 26.2 70 0.0015 22.2 2.6 36 47-82 146-181 (185)
106 smart00427 H2B Histone H2B. 25.5 89 0.0019 20.1 2.7 15 73-87 8-22 (89)
107 PF15178 TOM_sub5: Mitochondri 25.4 67 0.0015 18.4 1.9 23 55-77 3-25 (51)
108 PF13374 TPR_10: Tetratricopep 24.7 53 0.0012 16.2 1.4 17 66-82 26-42 (42)
109 PF04967 HTH_10: HTH DNA bindi 24.7 74 0.0016 18.3 2.1 31 46-76 22-52 (53)
110 PRK13798 putative OHCU decarbo 24.6 96 0.0021 22.0 3.0 11 89-99 100-110 (166)
111 PRK12547 RNA polymerase sigma 24.2 79 0.0017 21.4 2.5 31 48-78 129-159 (164)
112 PF12434 Malate_DH: Malate deh 23.4 99 0.0022 15.6 2.1 18 64-81 9-26 (28)
113 PF11487 RestrictionSfiI: Type 22.2 7.5 0.00016 29.2 -3.1 64 15-83 19-91 (262)
114 COG1955 FlaJ Archaeal flagella 22.1 2.8E+02 0.0061 23.6 5.6 37 47-83 318-355 (527)
115 PF00076 RRM_1: RNA recognitio 22.1 71 0.0015 17.6 1.7 22 57-78 4-25 (70)
116 KOG3960 Myogenic helix-loop-he 21.4 68 0.0015 24.8 1.8 15 89-103 129-143 (284)
117 cd04762 HTH_MerR-trunc Helix-T 21.3 62 0.0014 16.6 1.2 14 48-61 1-14 (49)
118 cd01388 SOX-TCF_HMG-box SOX-TC 21.3 1E+02 0.0022 18.2 2.3 34 70-104 14-47 (72)
119 PRK14102 nifW nitrogenase stab 20.8 2.6E+02 0.0057 18.5 5.9 57 47-103 11-78 (105)
120 PF04282 DUF438: Family of unk 20.2 64 0.0014 19.8 1.2 26 56-81 6-31 (71)
121 PF07739 TipAS: TipAS antibiot 20.2 1.4E+02 0.0031 18.8 3.0 39 56-97 49-88 (118)
No 1
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.1e-25 Score=145.40 Aligned_cols=105 Identities=60% Similarity=0.940 Sum_probs=98.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCchhhhhhhcCCCCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 040731 1 ATPFLAGLAIAAAALAGRYGIQ----AWQAIKTRPPKPKIRKFYEGGFQTTMTKREAALILGVRENATPDKVKEAHRRVM 76 (111)
Q Consensus 1 ~~~~i~~l~i~~~~~~~r~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~ 76 (111)
+.|+++|+.|....+-+|.+++ +||.+...+.+.....||++||+..|+..||-.||||++..+++.||+++|+.+
T Consensus 2 ~~~i~~G~gvaa~a~ag~~gl~~~~~~~qa~~~~~~~~~~~~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM 81 (112)
T KOG0723|consen 2 VSPIIAGLGVAALAFAGRYGLWMKTLAKQAFKTLPKGPFFGAFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIM 81 (112)
T ss_pred chhHHHhHHHHHHHHhchhhhhchhHHHHHHHHcCCCcchhhhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHHH
Confidence 4789999999999999999999 888888888778888999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHhcCCCC
Q 040731 77 VANHPDAGGSHYLASKINEAKDVMLGKTK 105 (111)
Q Consensus 77 ~~~HPDk~g~~~~~~~i~~Ay~~L~~~~~ 105 (111)
..||||++||+|...+||+|+++|.....
T Consensus 82 ~~NHPD~GGSPYlAsKINEAKdlLe~~~~ 110 (112)
T KOG0723|consen 82 LANHPDRGGSPYLASKINEAKDLLEGTSL 110 (112)
T ss_pred HcCCCcCCCCHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999986543
No 2
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.92 E-value=3.5e-24 Score=144.43 Aligned_cols=99 Identities=39% Similarity=0.680 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----------hhhhhh----hcCCCCCCCHHHHHHHcCCCCCCCHHHH
Q 040731 3 PFLAGLAIAAAALAGRYGIQAWQAIKTRPPKP----------KIRKFY----EGGFQTTMTKREAALILGVRENATPDKV 68 (111)
Q Consensus 3 ~~i~~l~i~~~~~~~r~~~~a~~~~~~~~~~~----------~~~~~~----~~~~~~~m~~~ea~~iLgl~~~~s~~eI 68 (111)
||++ +.+.++.+++|.++++|++....++++ ..+.++ ..++++.|+.+|||+||||+++++.+||
T Consensus 4 ~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~~As~~eI 82 (116)
T PTZ00100 4 PIVA-LTFGGGVLAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISPTASKERI 82 (116)
T ss_pred hHHH-HHHhHHHHHHHHHHHHHHHHhhccCccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCCCCCHHHH
Confidence 6666 888999999999999999877766432 233433 5689999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcC
Q 040731 69 KEAHRRVMVANHPDAGGSHYLASKINEAKDVMLG 102 (111)
Q Consensus 69 k~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~L~~ 102 (111)
+++||+|++++|||++|+++.+++|++||++|.+
T Consensus 83 kkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~k 116 (116)
T PTZ00100 83 REAHKQLMLRNHPDNGGSTYIASKVNEAKDLLLK 116 (116)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999963
No 3
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=99.86 E-value=3.2e-22 Score=136.89 Aligned_cols=104 Identities=25% Similarity=0.361 Sum_probs=47.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-h-hhh----hhcCCCCCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Q 040731 1 ATPFLAGLAIAAAALAGRYGIQAWQAIKTRPPKPK-I-RKF----YEGGFQTTMTKREAALILGVRENATPDKVKEAHRR 74 (111)
Q Consensus 1 ~~~~i~~l~i~~~~~~~r~~~~a~~~~~~~~~~~~-~-~~~----~~~~~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~ 74 (111)
+++||++++|+|+.+++|+|.+||+|+..+.+... . +.. ........|+++||+.||||++..++++|.++|.+
T Consensus 2 a~riiaqiiv~G~~vvgRAf~~AyrQA~aa~~~a~~a~~~a~~~~~a~~~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~ 81 (127)
T PF03656_consen 2 AKRIIAQIIVTGGQVVGRAFTQAYRQAAAAAQAAAGAGQNASARGAAASNSKGMTLDEARQILNVKEELSREEIQKRYKH 81 (127)
T ss_dssp -------------------------------------------------------HHHHHHHHT--G--SHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCHHHHHHHcCCCCccCHHHHHHHHHH
Confidence 57899999999999999999999999984432211 1 111 11113348999999999999999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHhcCCC
Q 040731 75 VMVANHPDAGGSHYLASKINEAKDVMLGKT 104 (111)
Q Consensus 75 l~~~~HPDk~g~~~~~~~i~~Ay~~L~~~~ 104 (111)
|+..|+|++|||+|++.+|..|+|+|..+.
T Consensus 82 Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 82 LFKANDPSKGGSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998653
No 4
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.3e-18 Score=135.23 Aligned_cols=61 Identities=33% Similarity=0.454 Sum_probs=55.8
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHhcCCCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDVMLGKTKGSG 108 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~---~~~~~~i~~Ay~~L~~~~~r~~ 108 (111)
|...++|+||||+.++|.+|||++||+|+++||||++. + .++|++|++|||+|+|+++|..
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~ 65 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAA 65 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55679999999999999999999999999999999976 4 4689999999999999999864
No 5
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=3.1e-16 Score=106.12 Aligned_cols=104 Identities=24% Similarity=0.327 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-hhhhhhc-------CCCCCCCHHHHHHHcCCCCCCCHHHHHHHHH
Q 040731 2 TPFLAGLAIAAAALAGRYGIQAWQAIKTRPPKPK-IRKFYEG-------GFQTTMTKREAALILGVRENATPDKVKEAHR 73 (111)
Q Consensus 2 ~~~i~~l~i~~~~~~~r~~~~a~~~~~~~~~~~~-~~~~~~~-------~~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr 73 (111)
+|.+++++|.|+.+++|+|.+||+|+.++..... .+.-.+. .....|+++|+..||+|++..++++|.++|.
T Consensus 2 ~R~~aqiIi~G~qvvgrAf~~A~RQeia~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~ye 81 (132)
T KOG3442|consen 2 ARYLAQIIIMGSQVVGRAFVQAYRQEIAASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRYE 81 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHHH
Confidence 6899999999999999999999998866442211 1111111 1223599999999999999999999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCC
Q 040731 74 RVMVANHPDAGGSHYLASKINEAKDVMLGKTK 105 (111)
Q Consensus 74 ~l~~~~HPDk~g~~~~~~~i~~Ay~~L~~~~~ 105 (111)
.|+..|.+.+|||+|++.+|-.|.|.|..+.+
T Consensus 82 hLFevNdkskGGSFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 82 HLFEVNDKSKGGSFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred HHHhccCcccCcceeehHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876543
No 6
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.67 E-value=7.6e-17 Score=128.92 Aligned_cols=63 Identities=22% Similarity=0.399 Sum_probs=58.7
Q ss_pred CCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 040731 45 QTTMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGSHYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 45 ~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.+.|...++|++|||++++|.+|||++||+|+++||||++++.+.|++|++||++|+|+.+|.
T Consensus 22 ~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~ 84 (421)
T PTZ00037 22 KREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRK 84 (421)
T ss_pred cccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHH
Confidence 445677899999999999999999999999999999999998999999999999999998874
No 7
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.8e-17 Score=125.29 Aligned_cols=61 Identities=28% Similarity=0.401 Sum_probs=55.5
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHHhcCCCCCC
Q 040731 47 TMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGSH----YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~----~~~~~i~~Ay~~L~~~~~r~ 107 (111)
..+.+|.|+||||+.++|..|||++||+|++++|||||.++ +.|++||.||++|+|+.+|.
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk 76 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRK 76 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34558999999999999999999999999999999998754 58899999999999998875
No 8
>PHA03102 Small T antigen; Reviewed
Probab=99.65 E-value=2e-16 Score=111.37 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=56.6
Q ss_pred CHHHHHHHcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 040731 49 TKREAALILGVRENA--TPDKVKEAHRRVMVANHPDAGGSHYLASKINEAKDVMLGKTKGSG 108 (111)
Q Consensus 49 ~~~ea~~iLgl~~~~--s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~L~~~~~r~~ 108 (111)
+.++++++|||++++ |.++||++||++++++|||++|+++.|++||+||++|.++..+..
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence 468999999999999 999999999999999999999999999999999999999877655
No 9
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.63 E-value=6.7e-16 Score=91.76 Aligned_cols=54 Identities=33% Similarity=0.448 Sum_probs=49.5
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-----CHHHHHHHHHHHHHhcCCCC
Q 040731 52 EAALILGVRENATPDKVKEAHRRVMVANHPDAGG-----SHYLASKINEAKDVMLGKTK 105 (111)
Q Consensus 52 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-----~~~~~~~i~~Ay~~L~~~~~ 105 (111)
++|++|||+++++.++|+++|+++++.+|||+++ ..+.+.+|++||++|.++.+
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 6899999999999999999999999999999987 34688999999999998753
No 10
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.61 E-value=1.4e-15 Score=88.85 Aligned_cols=51 Identities=31% Similarity=0.438 Sum_probs=47.2
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcC
Q 040731 52 EAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLG 102 (111)
Q Consensus 52 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~ 102 (111)
++|++|||+++++.++|+++|+++++.+|||++++ ...+.+|++||++|++
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999999999999999999999774 5788999999999975
No 11
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=6.4e-16 Score=121.82 Aligned_cols=60 Identities=35% Similarity=0.527 Sum_probs=54.2
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHhcCCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
|+..++|++|||+++++.+|||++||+|+++||||++. ..+.|++|++||++|+|+.+|.
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~ 63 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRK 63 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhh
Confidence 45579999999999999999999999999999999964 3468999999999999998874
No 12
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.59 E-value=2.5e-15 Score=90.61 Aligned_cols=55 Identities=29% Similarity=0.465 Sum_probs=50.2
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCC-CCH----HHHHHHHHHHHHhcCCCCC
Q 040731 52 EAALILGVRENATPDKVKEAHRRVMVANHPDAG-GSH----YLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 52 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~-g~~----~~~~~i~~Ay~~L~~~~~r 106 (111)
++|+||||+++++.++|+++|+++++.+|||+. ++. +.+..|++||++|.++.+|
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R 60 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERR 60 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHH
Confidence 589999999999999999999999999999994 455 6889999999999998765
No 13
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=2.4e-15 Score=119.32 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=53.2
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHhcCCCCCC
Q 040731 50 KREAALILGVRENATPDKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 50 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~---~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
..|+|++|||+++++.+|||++||+|+++||||+++ + .+.|++|++||++|+|+.+|.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~ 69 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence 479999999999999999999999999999999975 3 368899999999999998874
No 14
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=1.9e-15 Score=119.05 Aligned_cols=57 Identities=25% Similarity=0.319 Sum_probs=52.0
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~---~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|+||||++++|.+|||++||+|+++||||++. + .+.|++|++||++|+|+.+|.
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~ 63 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHH
Confidence 58999999999999999999999999999999975 2 368999999999999998764
No 15
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.3e-15 Score=118.63 Aligned_cols=60 Identities=27% Similarity=0.391 Sum_probs=53.8
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
|+..++|++|||+++++.+|||++||+|+++||||++.. .+.|++|++||++|+|+.+|.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 64 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence 455799999999999999999999999999999999752 368999999999999998763
No 16
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=4.3e-15 Score=116.91 Aligned_cols=60 Identities=32% Similarity=0.397 Sum_probs=53.8
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHhcCCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
|...++|+||||+++++.+|||++||+|+++||||++.. .+.|++|++||++|+|+.+|.
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 65 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence 445799999999999999999999999999999999653 358899999999999998875
No 17
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=5.6e-15 Score=116.43 Aligned_cols=60 Identities=33% Similarity=0.446 Sum_probs=53.7
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHhcCCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
|...++|++|||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|+|+.+|.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~ 63 (371)
T PRK14287 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKA 63 (371)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHH
Confidence 445689999999999999999999999999999999754 357899999999999998764
No 18
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=5.5e-15 Score=113.11 Aligned_cols=59 Identities=34% Similarity=0.446 Sum_probs=52.9
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHhcCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Ay~~L~~~~~r 106 (111)
|...++|+||||++++|.+|||++||+|++++|||++.+ .+.|++|++||++|+++.+|
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr 62 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKR 62 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHH
Confidence 445799999999999999999999999999999999753 36889999999999998765
No 19
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=9.1e-15 Score=115.04 Aligned_cols=57 Identities=28% Similarity=0.490 Sum_probs=52.0
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|++|||+++++.+|||++||+|+++||||++++ .+.|++|++||++|+|+.+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 63 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhH
Confidence 689999999999999999999999999999999753 257999999999999998764
No 20
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=1.1e-14 Score=115.15 Aligned_cols=60 Identities=27% Similarity=0.349 Sum_probs=53.9
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHhcCCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
|..+++|+||||+++++.+|||++||+|+++||||++.+ .+.|++|++||++|+|+.+|.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 63 (380)
T PRK14276 1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRA 63 (380)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhh
Confidence 344699999999999999999999999999999999753 478999999999999998764
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.2e-14 Score=114.46 Aligned_cols=60 Identities=33% Similarity=0.472 Sum_probs=53.5
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-H---HHHHHHHHHHHHhcCCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS-H---YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-~---~~~~~i~~Ay~~L~~~~~r~ 107 (111)
|+..++|+||||+++++.+|||++||+|++++|||++++ . +.|++|++||++|+++.+|.
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 64 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhh
Confidence 455799999999999999999999999999999999753 2 57899999999999998764
No 22
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.4e-14 Score=114.19 Aligned_cols=60 Identities=28% Similarity=0.433 Sum_probs=53.6
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
|+..++|++|||+++++.++||++||+|++++|||++.+ .+.|++|++||++|+|+.+|.
T Consensus 1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 64 (373)
T PRK14301 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64 (373)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence 345799999999999999999999999999999999753 257899999999999998775
No 23
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.6e-14 Score=114.57 Aligned_cols=58 Identities=31% Similarity=0.426 Sum_probs=52.4
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 50 KREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 50 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
..++|+||||+++++.+|||++||+|+++||||++.+ .+.|++|++||++|+|+.+|.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 69 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHH
Confidence 3699999999999999999999999999999999652 368899999999999998764
No 24
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.3e-14 Score=114.43 Aligned_cols=60 Identities=32% Similarity=0.448 Sum_probs=53.7
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHhcCCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
|...++|+||||+++++.+|||++||+|+++||||++. ..+.|++|++||++|+|+.+|.
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 63 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRA 63 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHH
Confidence 44579999999999999999999999999999999964 3478999999999999998764
No 25
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.3e-14 Score=114.02 Aligned_cols=60 Identities=30% Similarity=0.443 Sum_probs=53.8
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
|+..++|+||||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|+|+.+|.
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~ 64 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRG 64 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence 556799999999999999999999999999999999763 367899999999999997763
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.4e-14 Score=114.36 Aligned_cols=60 Identities=30% Similarity=0.383 Sum_probs=53.8
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHhcCCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
|...++|++|||+++++.+|||++||+|+++||||++. ..+.|++|++||++|+|+.+|.
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~ 64 (378)
T PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQ 64 (378)
T ss_pred CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHH
Confidence 33579999999999999999999999999999999964 4578999999999999998764
No 27
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.9e-14 Score=113.69 Aligned_cols=58 Identities=28% Similarity=0.396 Sum_probs=52.6
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHhcCCCCCC
Q 040731 50 KREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 50 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
..++|+||||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|+|+.+|.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~ 64 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRA 64 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhh
Confidence 3699999999999999999999999999999999754 367899999999999998764
No 28
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.9e-14 Score=113.65 Aligned_cols=60 Identities=28% Similarity=0.451 Sum_probs=53.4
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
|...++|++|||+++++.+|||++||+|+++||||++.+ .+.|++|++||++|+|+.+|.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 64 (380)
T PRK14297 1 MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64 (380)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhC
Confidence 334699999999999999999999999999999999753 257899999999999998775
No 29
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=1.6e-14 Score=114.11 Aligned_cols=57 Identities=28% Similarity=0.339 Sum_probs=52.4
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGSH---YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~---~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|+||||+++++.+|||++||+|++++|||++++. +.|++|++||++|+|+.+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 62 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR 62 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhh
Confidence 5899999999999999999999999999999998764 47899999999999998774
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=2.4e-14 Score=113.75 Aligned_cols=57 Identities=30% Similarity=0.439 Sum_probs=52.1
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|+||||+++++.+|||++||+|++++|||++++ .+.|++|++||++|+|+.+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 63 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR 63 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhh
Confidence 589999999999999999999999999999999764 367899999999999988764
No 31
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.5e-14 Score=113.22 Aligned_cols=57 Identities=33% Similarity=0.446 Sum_probs=51.8
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|+||||+++++.+|||++||+|+++||||++.+ .+.|++|++||++|+|+.+|.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 65 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 65 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 699999999999999999999999999999999753 357899999999999997764
No 32
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.1e-14 Score=111.75 Aligned_cols=57 Identities=26% Similarity=0.368 Sum_probs=52.3
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGSH-YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-~~~~~i~~Ay~~L~~~~~r~ 107 (111)
...|.||||+++++.+|||++||+|+++|||||+.+. +.|++|+.|||+|+|+++|.
T Consensus 4 ~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~ 61 (337)
T KOG0712|consen 4 TKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKRE 61 (337)
T ss_pred cccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence 4579999999999999999999999999999998765 79999999999999987763
No 33
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.49 E-value=2.7e-14 Score=109.89 Aligned_cols=59 Identities=24% Similarity=0.348 Sum_probs=53.2
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHhcCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Ay~~L~~~~~r 106 (111)
|+..++|++|||+++++.+|||++||+|++++|||++. ....|++|++||++|+++.+|
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr 62 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 62 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHH
Confidence 45579999999999999999999999999999999964 456889999999999998766
No 34
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.7e-13 Score=100.83 Aligned_cols=60 Identities=27% Similarity=0.377 Sum_probs=53.9
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHHHhcCCCCC
Q 040731 47 TMTKREAALILGVRENATPDKVKEAHRRVMVANHPDA----GGSHYLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk----~g~~~~~~~i~~Ay~~L~~~~~r 106 (111)
.+..-|+|+||||+++++..|||++||+|++++|||| .++.+.+..|++||+.|.|+..|
T Consensus 95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sr 158 (230)
T KOG0721|consen 95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSR 158 (230)
T ss_pred HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhH
Confidence 4445689999999999999999999999999999999 56778889999999999998765
No 35
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=6.1e-14 Score=110.89 Aligned_cols=57 Identities=35% Similarity=0.425 Sum_probs=52.2
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|++|||+++++.++||++||+|++++|||++.+ .+.|++|++||++|+|+.+|.
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~ 62 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRK 62 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence 589999999999999999999999999999999753 468999999999999998764
No 36
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=8.4e-14 Score=109.77 Aligned_cols=57 Identities=28% Similarity=0.364 Sum_probs=51.8
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|+||||++++|.+|||++||++++++|||++.+ .+.|++|++||++|+|+.+|+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~ 62 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRA 62 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhh
Confidence 589999999999999999999999999999999643 468899999999999988664
No 37
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.1e-13 Score=108.88 Aligned_cols=57 Identities=30% Similarity=0.381 Sum_probs=51.8
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGSH-----YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-----~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|+||||+++++.+||+++||+|++++|||++.+. +.|++|++||++|+|+.+|.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 64 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR 64 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhh
Confidence 5899999999999999999999999999999997532 67899999999999998764
No 38
>PHA02624 large T antigen; Provisional
Probab=99.44 E-value=1.6e-13 Score=113.71 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=55.7
Q ss_pred HHHHHHHcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 040731 50 KREAALILGVRENA--TPDKVKEAHRRVMVANHPDAGGSHYLASKINEAKDVMLGKTKGSG 108 (111)
Q Consensus 50 ~~ea~~iLgl~~~~--s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~L~~~~~r~~ 108 (111)
.+++|++|||++++ +.++||++||++++++|||++|+++.|++|++||++|.++.++..
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r 70 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSAR 70 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhh
Confidence 57999999999999 999999999999999999999999999999999999999877654
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.8e-13 Score=103.40 Aligned_cols=58 Identities=29% Similarity=0.428 Sum_probs=53.7
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 50 KREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 50 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
..+.|++|||+.+++.++||++||+|++++|||++|+ +++|.+||.||++|+|+.+|.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~ 91 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRN 91 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhh
Confidence 6789999999999999999999999999999999776 368999999999999998874
No 40
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.4e-13 Score=109.10 Aligned_cols=56 Identities=30% Similarity=0.469 Sum_probs=50.9
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 52 EAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 52 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
++|+||||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|.|+.+|.
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 61 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHH
Confidence 68999999999999999999999999999999763 357899999999999997653
No 41
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.43 E-value=3.7e-13 Score=102.21 Aligned_cols=58 Identities=29% Similarity=0.402 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCC---C-CH-------HHHHHHHHHHHHhcCC
Q 040731 46 TTMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAG---G-SH-------YLASKINEAKDVMLGK 103 (111)
Q Consensus 46 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~---g-~~-------~~~~~i~~Ay~~L~~~ 103 (111)
..++..++|++||+++++|.++||++||+|+++||||+. | ++ +.+++|++||++|++.
T Consensus 195 ~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 195 RGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 368899999999999999999999999999999999993 2 22 4779999999999864
No 42
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.4e-13 Score=108.87 Aligned_cols=59 Identities=34% Similarity=0.410 Sum_probs=52.9
Q ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 49 TKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 49 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
...++|++|||+++++.+||+++||+|++++|||++.. .+.|++|++||++|.|+.+|.
T Consensus 3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 65 (386)
T PRK14289 3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65 (386)
T ss_pred ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34799999999999999999999999999999999753 367899999999999997764
No 43
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.42 E-value=1.8e-13 Score=107.03 Aligned_cols=56 Identities=30% Similarity=0.418 Sum_probs=51.0
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHhcCCCCCC
Q 040731 52 EAALILGVRENATPDKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 52 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
++|++|||+++++.++||++||+|++++|||++.+ .+.|++|++||++|+|+.+|.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 59 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRA 59 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHH
Confidence 57999999999999999999999999999999753 468999999999999998764
No 44
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.6e-13 Score=108.71 Aligned_cols=61 Identities=25% Similarity=0.350 Sum_probs=54.2
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHHhcCCCCCC
Q 040731 47 TMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGSH-----YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-----~~~~~i~~Ay~~L~~~~~r~ 107 (111)
+.....+|++|||+.++++.+||++||+|+++||||++++. +.|+.|+.||++|+|+..|.
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~ 69 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERA 69 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence 34457899999999999999999999999999999997643 57899999999999997763
No 45
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.9e-13 Score=104.75 Aligned_cols=62 Identities=27% Similarity=0.402 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHhcCCCCCC
Q 040731 46 TTMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 46 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
..+..+++|+|||++.+++..|||.+|++|++++|||.+. ....|++|.+|||+|+++.+|.
T Consensus 38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~ 102 (288)
T KOG0715|consen 38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQ 102 (288)
T ss_pred ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHH
Confidence 4555669999999999999999999999999999999854 4578999999999999998875
No 46
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=4.1e-13 Score=105.69 Aligned_cols=57 Identities=30% Similarity=0.392 Sum_probs=52.0
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|+|+.+|.
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~ 61 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRA 61 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhh
Confidence 478999999999999999999999999999999864 467899999999999998764
No 47
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.9e-12 Score=103.98 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=54.0
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCH-------HHHHHHHHHHHHhcCCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-------~~~~~i~~Ay~~L~~~~~r~ 107 (111)
....|.|.+|+++++++.+||+++||+++..+||||.-|+ +.|++|.+|||+|+|+.+|.
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa 72 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA 72 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 3446999999999999999999999999999999997765 47899999999999998763
No 48
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=1.1e-12 Score=103.49 Aligned_cols=57 Identities=30% Similarity=0.372 Sum_probs=51.9
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|+||||+++++.+||+++||++++++|||++. ..+.|+.|++||++|+++.+|.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~ 62 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHH
Confidence 58999999999999999999999999999999964 3478899999999999998764
No 49
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.1e-12 Score=98.35 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=52.4
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-H---HHHHHHHHHHHHhcCCCCCC
Q 040731 50 KREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS-H---YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 50 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-~---~~~~~i~~Ay~~L~~~~~r~ 107 (111)
..|+|.||||+++++..+|+++|+..++.+|||||.+ + +.|+.|.+||++|.|+..|.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~ 65 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRA 65 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4699999999999999999999999999999999754 3 57899999999999987664
No 50
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.5e-12 Score=89.83 Aligned_cols=59 Identities=27% Similarity=0.362 Sum_probs=52.9
Q ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CH----HHHHHHHHHHHHhcCCCCCC
Q 040731 49 TKREAALILGVRENATPDKVKEAHRRVMVANHPDAGG-SH----YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 49 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~~----~~~~~i~~Ay~~L~~~~~r~ 107 (111)
...++|+||||+++++..||+++||++++++|||++. ++ +.|+.|++||++|+++.++.
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~ 67 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA 67 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence 4578999999999999999999999999999999965 33 78899999999999987764
No 51
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.27 E-value=4.4e-12 Score=109.00 Aligned_cols=61 Identities=23% Similarity=0.156 Sum_probs=54.5
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHhcCCCCCC
Q 040731 47 TMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.+...++|+||||+++++..+||++||+|++++|||++.+ ...|++|++||++|+|+.+|.
T Consensus 569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk 632 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKK 632 (1136)
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence 3445799999999999999999999999999999999753 357899999999999998875
No 52
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=6.1e-12 Score=93.71 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=52.1
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHHHhcCCCCCC
Q 040731 50 KREAALILGVRENATPDKVKEAHRRVMVANHPDAGG------SHYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 50 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g------~~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
..+.|++|||..+++..+|+++|+++++++|||++. ....|+.|+.||.+|.|+.+|.
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~ 76 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRA 76 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 359999999999999999999999999999999962 3468999999999999987764
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.22 E-value=1.7e-11 Score=87.70 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=48.0
Q ss_pred HHHHHcCCCCC--CCHHHHHHHHHHHHHhcCCCCCC--CH-------HHHHHHHHHHHHhcCCCCCC
Q 040731 52 EAALILGVREN--ATPDKVKEAHRRVMVANHPDAGG--SH-------YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 52 ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g--~~-------~~~~~i~~Ay~~L~~~~~r~ 107 (111)
++|++|||++. .+..+|+++|+++++++|||+.. +. ..+..||+||++|+++.+|.
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra 68 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRA 68 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHH
Confidence 68999999996 68899999999999999999943 22 24588999999999998765
No 54
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.21 E-value=1.2e-11 Score=104.31 Aligned_cols=57 Identities=30% Similarity=0.484 Sum_probs=51.6
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGSH---YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~---~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|+||||+++++.++||++||+|++++|||++++. ..|++|++||++|+++.+|.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa 61 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRA 61 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHH
Confidence 4799999999999999999999999999999997653 46899999999999988765
No 55
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.20 E-value=1.8e-11 Score=87.34 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=48.8
Q ss_pred HHHHHHcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCHH-------HHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVREN--ATPDKVKEAHRRVMVANHPDAGGSHY-------LASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~~~-------~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|++|||++. ++..+|+++|+++++++|||+..+.. .+..||+||++|+++.+|+
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra 67 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA 67 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 468999999997 68999999999999999999965432 2469999999999997664
No 56
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.17 E-value=4e-11 Score=86.08 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=50.7
Q ss_pred CCHHHHHHHcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCC--H-------HHHHHHHHHHHHhcCCCCCC
Q 040731 48 MTKREAALILGVREN--ATPDKVKEAHRRVMVANHPDAGGS--H-------YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 48 m~~~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~--~-------~~~~~i~~Ay~~L~~~~~r~ 107 (111)
|...++|++||+++. .+..+|+++||++++++|||+..+ . ..+..||+||++|+++.+|+
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra 71 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA 71 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence 345679999999998 678999999999999999999432 2 24689999999999998775
No 57
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.17 E-value=4.9e-11 Score=85.79 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=48.8
Q ss_pred HHHHHHcCCCCC--CCHHHHHHHHHHHHHhcCCCCCC--CH-------HHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVREN--ATPDKVKEAHRRVMVANHPDAGG--SH-------YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g--~~-------~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|++|||++. .+..+|+++|+++++++|||+.. +. ..+..||+||++|+++.+|.
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra 73 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRA 73 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHH
Confidence 689999999996 68999999999999999999943 22 12479999999999998765
No 58
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.7e-10 Score=98.97 Aligned_cols=74 Identities=22% Similarity=0.334 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhhhcCCCCCCCHHHHHHHcCCCCC----CCHHHHHHHHHHHHHhcCCCCCC-CHHHH
Q 040731 16 AGRYGIQAWQAIKTRPPKPKIRKFYEGGFQTTMTKREAALILGVREN----ATPDKVKEAHRRVMVANHPDAGG-SHYLA 90 (111)
Q Consensus 16 ~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~----~s~~eIk~~yr~l~~~~HPDk~g-~~~~~ 90 (111)
+.|..+-+|++...+++. .|+..+||+||.++-+ .++++||++|++|+.+||||||. .-++|
T Consensus 1259 fL~~~L~~W~~ElekKP~-------------~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemF 1325 (2235)
T KOG1789|consen 1259 FLRCCLATWYNELEKKPA-------------TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMF 1325 (2235)
T ss_pred HHHHHHHHHHHHHhcCCC-------------ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 467778899988888844 8999999999999775 34588999999999999999986 45788
Q ss_pred HHHHHHHHHhcC
Q 040731 91 SKINEAKDVMLG 102 (111)
Q Consensus 91 ~~i~~Ay~~L~~ 102 (111)
.++|+|||.|..
T Consensus 1326 e~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1326 ERVNKAYELLSS 1337 (2235)
T ss_pred HHHHHHHHHHHH
Confidence 999999999983
No 59
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.4e-10 Score=87.75 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=52.3
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHhcCCCCCC
Q 040731 50 KREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 50 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.+++|++||++.+++..||.++||+|+++||||++.+ ...|..|..||++|.|+..+.
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt 92 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRT 92 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHH
Confidence 4899999999999999999999999999999999543 457899999999999987654
No 60
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.3e-10 Score=90.99 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=52.6
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHhcCCCCCC
Q 040731 50 KREAALILGVRENATPDKVKEAHRRVMVANHPDAGGSH---YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 50 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~---~~~~~i~~Ay~~L~~~~~r~ 107 (111)
..|+|.+|||+.++|.++||+.||+++...||||+-.+ +.|+.|..||++|.+..+|.
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~ 294 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRK 294 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhh
Confidence 45899999999999999999999999999999997644 68899999999999988764
No 61
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=4e-10 Score=88.87 Aligned_cols=62 Identities=29% Similarity=0.326 Sum_probs=54.5
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCHH-------HHHHHHHHHHHhcCCCCCCC
Q 040731 47 TMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGSHY-------LASKINEAKDVMLGKTKGSG 108 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~-------~~~~i~~Ay~~L~~~~~r~~ 108 (111)
....+|+|+||||..++++.||-++||+|+.+||||...+.+ .|.-|..|.++|+|+++|++
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrq 458 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQ 458 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhh
Confidence 344689999999999999999999999999999999866554 56889999999999988764
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.91 E-value=1.9e-09 Score=77.42 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=48.6
Q ss_pred HHHHHHcCCCCC--CCHHHHHHHHHHHHHhcCCCCC--CCH-------HHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVREN--ATPDKVKEAHRRVMVANHPDAG--GSH-------YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~--g~~-------~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|++||+++. .+...++++|+++.+.+|||+. .+. .....||+||.+|++|.+|+
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA 69 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA 69 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence 468999999987 7999999999999999999993 333 23489999999999998764
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.82 E-value=8.2e-09 Score=83.34 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=49.1
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---------HHHHHHHHHHHHHhcCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---------~~~~~~i~~Ay~~L~~~~~r 106 (111)
-|+|+||||+.+.+..+||++||+|..++||||-.. .+....|++||+.|.|..+|
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~r 162 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRR 162 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 578999999999999999999999999999999432 24568999999999988665
No 64
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7.9e-09 Score=82.65 Aligned_cols=59 Identities=25% Similarity=0.421 Sum_probs=52.9
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHHhcCCCCCCC
Q 040731 50 KREAALILGVRENATPDKVKEAHRRVMVANHPDAGGSH-----YLASKINEAKDVMLGKTKGSG 108 (111)
Q Consensus 50 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-----~~~~~i~~Ay~~L~~~~~r~~ 108 (111)
..+||.|||+..+++..||+++||++++.||||++... -.|+++-+||.+|.|+.++.+
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 46999999999999999999999999999999996544 368999999999999987764
No 65
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.2e-08 Score=75.56 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=50.3
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHHhcCCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGSH-----YLASKINEAKDVMLGKTKGSG 108 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-----~~~~~i~~Ay~~L~~~~~r~~ 108 (111)
.++|.+|||..+++.++|+++|+++++++|||++.++ ..+.++.+||++|.++.++..
T Consensus 3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~ 65 (306)
T KOG0714|consen 3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKI 65 (306)
T ss_pred ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhh
Confidence 5899999999999988999999999999999996554 246888899999999877653
No 66
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.69 E-value=2.4e-08 Score=70.61 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCC--CCH-------HHHHHHHHHHHHhcCCCCCC
Q 040731 62 NATPDKVKEAHRRVMVANHPDAG--GSH-------YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 62 ~~s~~eIk~~yr~l~~~~HPDk~--g~~-------~~~~~i~~Ay~~L~~~~~r~ 107 (111)
+.+..+|+++|+++++++|||+. .+. ..+..||+||++|+++.+|+
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra 56 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRA 56 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhH
Confidence 35789999999999999999983 221 45699999999999998775
No 67
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.4e-08 Score=72.58 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=48.0
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHHhcCCC
Q 040731 52 EAALILGVRENATPDKVKEAHRRVMVANHPDAGGSH-----YLASKINEAKDVMLGKT 104 (111)
Q Consensus 52 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-----~~~~~i~~Ay~~L~~~~ 104 (111)
.+|++|.|.++++.++|+++||+|+...|||+|.++ ..|.-|..||..|.++.
T Consensus 54 NpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~ 111 (250)
T KOG1150|consen 54 NPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDK 111 (250)
T ss_pred ChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHH
Confidence 689999999999999999999999999999999876 25677899999998875
No 68
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.1e-06 Score=66.27 Aligned_cols=52 Identities=37% Similarity=0.440 Sum_probs=46.6
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHH-Hhc
Q 040731 50 KREAALILGVRENATPDKVKEAHRRVMVANHPDAGG---SHYLASKINEAKD-VML 101 (111)
Q Consensus 50 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Ay~-~L~ 101 (111)
..|+|.|||++++++.++++.+|.+|++.+|||.|. +...|.+|.+||. +|.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq 101 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQ 101 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999864 5678999999998 443
No 69
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=4.1e-06 Score=64.31 Aligned_cols=58 Identities=22% Similarity=0.376 Sum_probs=51.1
Q ss_pred HHHHHHcCCCCC---CCHHHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHHHhcCCCCCCC
Q 040731 51 REAALILGVREN---ATPDKVKEAHRRVMVANHPDAG------GSHYLASKINEAKDVMLGKTKGSG 108 (111)
Q Consensus 51 ~ea~~iLgl~~~---~s~~eIk~~yr~l~~~~HPDk~------g~~~~~~~i~~Ay~~L~~~~~r~~ 108 (111)
.+.|.+|||+.- +.+++|.+++++.+.+||||+. |+...|.-|..||++|.|..+|..
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~q 109 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQ 109 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhh
Confidence 689999999885 7889999999999999999992 466788999999999999987754
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0001 Score=52.69 Aligned_cols=50 Identities=32% Similarity=0.498 Sum_probs=42.9
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCC---CCCHH--------HHHHHHHHHHHh
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDA---GGSHY--------LASKINEAKDVM 100 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk---~g~~~--------~~~~i~~Ay~~L 100 (111)
.++|.+||++...+..+|+++|++++..+|||+ .|.+. ..++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999998 44443 347788888754
No 71
>PF13446 RPT: A repeated domain in UCH-protein
Probab=97.22 E-value=0.0021 Score=38.31 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=38.5
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Q 040731 47 TMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGSHYLASKINEAKDVML 101 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~L~ 101 (111)
.|+.++||++||++++.+.+.|-..|+.... .. |.....+.+|-.+|-
T Consensus 1 ~~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~------P~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 1 YMDVEEAYEILGIDEDTDDDFIISAFQSKVN-DD------PSQKDTLREALRVIA 48 (62)
T ss_pred CCCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-cC------hHhHHHHHHHHHHHH
Confidence 4899999999999999999999999999888 22 345556666666655
No 72
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00097 Score=47.34 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=47.3
Q ss_pred CHHHHHHHcCCCCC--CCHHHHHHHHHHHHHhcCCCCCC-------C--HHHHHHHHHHHHHhcCCCCCC
Q 040731 49 TKREAALILGVREN--ATPDKVKEAHRRVMVANHPDAGG-------S--HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 49 ~~~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g-------~--~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
+..+.|.++|.... .+++.+...|....++.|||+.+ + .+...+||+||++|.++.+|+
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA 75 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARA 75 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 45788999988665 67788888999999999999932 1 134689999999999997764
No 73
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.48 E-value=0.0037 Score=50.99 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCC
Q 040731 60 RENATPDKVKEAHRRVMVANHPDA 83 (111)
Q Consensus 60 ~~~~s~~eIk~~yr~l~~~~HPDk 83 (111)
..-++..+||++|||..+..||||
T Consensus 397 tDLVtp~~VKKaYrKA~L~VHPDK 420 (453)
T KOG0431|consen 397 TDLVTPAQVKKAYRKAVLCVHPDK 420 (453)
T ss_pred hhccCHHHHHHHHHhhhheeCccc
Confidence 333789999999999999999999
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=95.16 E-value=0.053 Score=39.67 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCC
Q 040731 60 RENATPDKVKEAHRRVMVANHPDAGGSHYLASKINEAKDVMLGK 103 (111)
Q Consensus 60 ~~~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~L~~~ 103 (111)
++++|.+||++++.++..+| +|+.....+|..|||.|.-+
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHH
Confidence 47899999999999999988 66788889999999988643
No 75
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=0.05 Score=38.79 Aligned_cols=43 Identities=23% Similarity=0.223 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCH---------HHHHHHHHHHHHhcCCCCC
Q 040731 64 TPDKVKEAHRRVMVANHPDAGGSH---------YLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 64 s~~eIk~~yr~l~~~~HPDk~g~~---------~~~~~i~~Ay~~L~~~~~r 106 (111)
+.+.++..|+.+.+.+|||+.++. ..+..+|.||.+|.++..+
T Consensus 16 ~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~r 67 (174)
T COG1076 16 DLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLR 67 (174)
T ss_pred HHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 445688999999999999995432 1347899999999987654
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=89.70 E-value=0.44 Score=31.95 Aligned_cols=42 Identities=24% Similarity=0.280 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCHHHH--------HHHHHHHHHhcCCC
Q 040731 63 ATPDKVKEAHRRVMVANHPDAGGSHYLA--------SKINEAKDVMLGKT 104 (111)
Q Consensus 63 ~s~~eIk~~yr~l~~~~HPDk~g~~~~~--------~~i~~Ay~~L~~~~ 104 (111)
.+..+++.+-|...++.|||.-+..... +.|+.=-+.|....
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 4667899999999999999985543333 45555555555443
No 77
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=69.03 E-value=7.5 Score=30.05 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCCC--------CCHHHHHHHHHHHHHhcCCC
Q 040731 63 ATPDKVKEAHRRVMVANHPDAG--------GSHYLASKINEAKDVMLGKT 104 (111)
Q Consensus 63 ~s~~eIk~~yr~l~~~~HPDk~--------g~~~~~~~i~~Ay~~L~~~~ 104 (111)
.+..+++..|+.....+|||+- .....+.+|.+||+++.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~ 53 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDE 53 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccc
Confidence 4677899999999999999975 23456799999999999843
No 78
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=59.76 E-value=12 Score=29.30 Aligned_cols=39 Identities=31% Similarity=0.348 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHc-----CCC-CCCCHHHHHHHHHHHHHhcCCCCC
Q 040731 46 TTMTKREAALIL-----GVR-ENATPDKVKEAHRRVMVANHPDAG 84 (111)
Q Consensus 46 ~~m~~~ea~~iL-----gl~-~~~s~~eIk~~yr~l~~~~HPDk~ 84 (111)
...+.+++.++| |-. ++.+.+|+-++.+..--.+|||.|
T Consensus 25 S~~~l~~a~~ll~~~~~g~~~~~~~~~~lw~Ak~l~~Sa~HPDTg 69 (308)
T PF03820_consen 25 SEAELEEAKELLEDYRAGKVPPGLTDDELWKAKKLYDSAFHPDTG 69 (308)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhcccCCCCC
Confidence 345567888887 332 235899999999999999999984
No 79
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=52.43 E-value=66 Score=21.26 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=42.1
Q ss_pred CCCHHHHHHHcCCCCC-----CCHHHHHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHhcCC
Q 040731 47 TMTKREAALILGVREN-----ATPDKVKEAHRRVMVANHPDAGGSHYLA-----SKINEAKDVMLGK 103 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~-----~s~~eIk~~yr~l~~~~HPDk~g~~~~~-----~~i~~Ay~~L~~~ 103 (111)
-.+.+|.++.|||+-+ ++.=.|-++|.......++.-+.++... .-+.+||+.....
T Consensus 11 L~sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~~~~e~~~~~~~R~~L~~AY~dFv~S 77 (105)
T PF03206_consen 11 LSSAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAPGLSEEEDWAAYRRALERAYQDFVTS 77 (105)
T ss_pred ccCHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567899999999887 4677788999999988877544444322 6678888876644
No 80
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=51.01 E-value=61 Score=20.44 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=22.8
Q ss_pred HHHcCCCCCCCHHHHHHHH----HHHHHhcCCCC
Q 040731 54 ALILGVRENATPDKVKEAH----RRVMVANHPDA 83 (111)
Q Consensus 54 ~~iLgl~~~~s~~eIk~~y----r~l~~~~HPDk 83 (111)
-+++|+++.++..||+.+- |+++-..||..
T Consensus 6 k~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~ 39 (88)
T COG5552 6 KELFNFDPPATPVEVRDAALQFVRKLSGTTHPSA 39 (88)
T ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcch
Confidence 3578999999999999876 45555667764
No 81
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=46.49 E-value=46 Score=22.87 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=12.3
Q ss_pred CCCHHHHHHHcCCCCC
Q 040731 47 TMTKREAALILGVREN 62 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~ 62 (111)
..+..+++.+||++++
T Consensus 89 ~L~~tqal~Ll~lpee 104 (130)
T PF11300_consen 89 NLSYTQALILLGLPEE 104 (130)
T ss_pred hhhHHHHHHHHcCCch
Confidence 4556789999999765
No 82
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=45.81 E-value=97 Score=21.28 Aligned_cols=85 Identities=12% Similarity=0.134 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhhcCCCCCCCHHHHHHHcCCCCC-----------------CCH
Q 040731 3 PFLAGLAIAAAALAGRYGIQAWQAIKTRPPKPKIRKFYEGGFQTTMTKREAALILGVREN-----------------ATP 65 (111)
Q Consensus 3 ~~i~~l~i~~~~~~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~-----------------~s~ 65 (111)
-++-+-+...=+-++|.|.+...--........ ..++..-++..+|+.+.|+.+. .++
T Consensus 27 eltqqeIr~lE~KLvK~fSkQL~~K~k~~~~~~-----~~~l~~yP~l~~WL~vVgl~~~~i~~i~~~~~tLe~Llemsd 101 (129)
T PF13543_consen 27 ELTQQEIRTLEGKLVKYFSKQLQCKAKVAERER-----AAELNSYPSLRQWLRVVGLRPESIQAILSKVLTLEALLEMSD 101 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC-----chhcccCCcHHHHhhhcCCCHHHHHHHHHhhcCHHHHHhCCH
Confidence 345556667777888888887655444442211 2344556889999999999886 233
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Q 040731 66 DKVKEAHRRVMVANHPDAGGSHYLASKINEAKDVM 100 (111)
Q Consensus 66 ~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~L 100 (111)
+|++.-..+ .+...+.-.+++.|-..|
T Consensus 102 ~el~~~l~~--------~g~~~EE~rRL~~Al~~L 128 (129)
T PF13543_consen 102 EELKEILNR--------CGAREEECRRLCRALSNL 128 (129)
T ss_pred HHHHHHHHH--------hCCCHHHHHHHHHHHHhc
Confidence 334333222 255667778888887655
No 83
>PF12669 P12: Virus attachment protein p12 family
Probab=45.49 E-value=32 Score=20.20 Aligned_cols=21 Identities=24% Similarity=0.064 Sum_probs=10.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHH
Q 040731 6 AGLAIAAAALA-GRYGIQAWQA 26 (111)
Q Consensus 6 ~~l~i~~~~~~-~r~~~~a~~~ 26 (111)
+.++++...++ .|.+++..++
T Consensus 5 ~~Ii~~~~~~v~~r~~~k~~K~ 26 (58)
T PF12669_consen 5 GIIILAAVAYVAIRKFIKDKKK 26 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444433 3766666544
No 84
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=43.14 E-value=55 Score=17.68 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHhCC
Q 040731 2 TPFLAGLAIAAAA-LAGRYGIQAWQAIKTRP 31 (111)
Q Consensus 2 ~~~i~~l~i~~~~-~~~r~~~~a~~~~~~~~ 31 (111)
-|++.++++...- .+.-.++-||.|+++..
T Consensus 3 EplL~GiVlGli~vtl~Glfv~Ay~QY~Rg~ 33 (37)
T PF02529_consen 3 EPLLSGIVLGLIPVTLAGLFVAAYLQYRRGN 33 (37)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCS--
T ss_pred chhhhhHHHHhHHHHHHHHHHHHHHHHhccc
Confidence 3677777765544 34557788999987654
No 85
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=41.89 E-value=1.1e+02 Score=20.61 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=35.3
Q ss_pred CCCHHHHHHHcCCCCC-----CCHHHHHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHhcC
Q 040731 47 TMTKREAALILGVREN-----ATPDKVKEAHRRVMVANHPDAGGSHYL-----ASKINEAKDVMLG 102 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~-----~s~~eIk~~yr~l~~~~HPDk~g~~~~-----~~~i~~Ay~~L~~ 102 (111)
--+.+|.++.|||+-+ .+.-.|-++|......-... +.++.. -..+.+||+....
T Consensus 15 LssAEdff~ff~V~YDp~vvnV~RLHILKrF~~yL~~~~~~-~~~e~~~~~~yr~aL~~AY~dF~~ 79 (113)
T PRK00810 15 LSSAEEFFQLLGVPYDPKVVNVARLHILKRMGQYLAQEDFA-GLPEAEARARCRAVLERAYADFVA 79 (113)
T ss_pred cccHHHHHHHhCCCCCHHHHHHhHHHHHHHHHHHHHhcccC-CCCHHHHHHHHHHHHHHHHHHHcc
Confidence 4467899999999887 45667778887776655421 112221 2567788876543
No 86
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=40.23 E-value=15 Score=21.78 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=19.5
Q ss_pred HHHHHHcCCCCCCCHHHH-HHHHHHHHHhcCCC
Q 040731 51 REAALILGVRENATPDKV-KEAHRRVMVANHPD 82 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eI-k~~yr~l~~~~HPD 82 (111)
++.+++||+++ +++ ......+....|||
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpd 34 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPD 34 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TT
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHH
Confidence 46788999854 556 55667788899998
No 87
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=39.31 E-value=33 Score=25.38 Aligned_cols=48 Identities=8% Similarity=0.129 Sum_probs=27.5
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHhc
Q 040731 52 EAALILGVRENATPDKVKEAHRRVMVANHPDAGG-SHYLASKINEAKDVML 101 (111)
Q Consensus 52 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~~~~~~~i~~Ay~~L~ 101 (111)
++..+|||+...+.+ +++|-+|.-+---++-. .-.-+....+||..|.
T Consensus 38 dPLtaLGIeArsd~E--RrryAEl~vk~E~~rvekeLA~qrayd~A~~RL~ 86 (200)
T TIGR03759 38 DPLTALGIEARSDEE--RRRYAELWVKQEAQRVEKELAFQRAYDAAWQRLY 86 (200)
T ss_pred ChhhhhccccCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 789999999886655 66665554432111100 0112356677777775
No 88
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=37.19 E-value=31 Score=18.35 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=7.8
Q ss_pred ChhHHHHHHHH
Q 040731 1 ATPFLAGLAIA 11 (111)
Q Consensus 1 ~~~~i~~l~i~ 11 (111)
++|+|++++.+
T Consensus 15 AAP~iagIi~s 25 (35)
T PF13940_consen 15 AAPIIAGIIAS 25 (35)
T ss_pred HhHHHHHHHHH
Confidence 47888887654
No 89
>PF12728 HTH_17: Helix-turn-helix domain
Probab=36.24 E-value=28 Score=18.99 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=12.5
Q ss_pred CCHHHHHHHcCCCCC
Q 040731 48 MTKREAALILGVREN 62 (111)
Q Consensus 48 m~~~ea~~iLgl~~~ 62 (111)
|+.+|+.++||++..
T Consensus 2 lt~~e~a~~l~is~~ 16 (51)
T PF12728_consen 2 LTVKEAAELLGISRS 16 (51)
T ss_pred CCHHHHHHHHCcCHH
Confidence 678999999999654
No 90
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=36.04 E-value=44 Score=26.51 Aligned_cols=62 Identities=26% Similarity=0.292 Sum_probs=44.0
Q ss_pred CCCHHHHHHHcC------CCCCCCHHHHHHHHHHHHHhcCCCCCCC--------H---------------H-------HH
Q 040731 47 TMTKREAALILG------VRENATPDKVKEAHRRVMVANHPDAGGS--------H---------------Y-------LA 90 (111)
Q Consensus 47 ~m~~~ea~~iLg------l~~~~s~~eIk~~yr~l~~~~HPDk~g~--------~---------------~-------~~ 90 (111)
.-..+++.+|+. ++++.+.+++-++.+..--.+|||.+.- . + ..
T Consensus 44 ~~~le~ar~iv~~yk~G~~~p~~t~~~lW~Akkl~dS~~HPDTgEk~~~~gRMSaqvP~nm~itggmLt~y~~~p~vvFw 123 (328)
T KOG3767|consen 44 EKKLEEARQIVEDYKAGKVPPGLTDDELWKAKKLYDSTFHPDTGEKMFLLGRMSAQVPFNMVITGGMLTPYRTTPGVVFW 123 (328)
T ss_pred HHHHHHHHHHHHhhccCCcCCCCcHHHHHHHHHHHhcccCCCCCCcccccccccccCcCcchhhhhhcccCCCCCeeeeH
Confidence 344677777764 4555789999999999999999998531 1 0 01
Q ss_pred HHHHHHHHHhcCCCCCCC
Q 040731 91 SKINEAKDVMLGKTKGSG 108 (111)
Q Consensus 91 ~~i~~Ay~~L~~~~~r~~ 108 (111)
+=+|+.+..+-+..-|+|
T Consensus 124 QW~NQSfNA~VNytNrsg 141 (328)
T KOG3767|consen 124 QWFNQSFNAAVNYTNRSG 141 (328)
T ss_pred HHhhhHHHHHHhhcccCC
Confidence 677888888777766555
No 91
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=36.03 E-value=36 Score=14.12 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhc
Q 040731 90 ASKINEAKDVML 101 (111)
Q Consensus 90 ~~~i~~Ay~~L~ 101 (111)
+..+..||+.|+
T Consensus 3 ~~~V~~aY~~l~ 14 (14)
T PF07709_consen 3 FEKVKNAYEQLS 14 (14)
T ss_pred HHHHHHHHHhcC
Confidence 456777777663
No 92
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=35.99 E-value=39 Score=16.02 Aligned_cols=11 Identities=18% Similarity=0.661 Sum_probs=7.5
Q ss_pred hhHHHHHHHHH
Q 040731 2 TPFLAGLAIAA 12 (111)
Q Consensus 2 ~~~i~~l~i~~ 12 (111)
+|+++|+++..
T Consensus 6 aPi~VGvvl~l 16 (21)
T PF13955_consen 6 APIVVGVVLTL 16 (21)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 57777777654
No 93
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=34.62 E-value=79 Score=17.02 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=18.5
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Q 040731 3 PFLAGLAIAAA-ALAGRYGIQAWQAIKTR 30 (111)
Q Consensus 3 ~~i~~l~i~~~-~~~~r~~~~a~~~~~~~ 30 (111)
|++.++++... -.+.-.|.-||.|+++.
T Consensus 4 plL~GiVLGlipiTl~GlfvaAylQYrRg 32 (37)
T PRK00665 4 PLLCGIVLGLIPVTLAGLFVAAWNQYKRG 32 (37)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 66666666443 33455788899999664
No 94
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=33.73 E-value=69 Score=23.30 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHcCC-----CCCCCHHHHHHHHH--HHHHhcCCCC
Q 040731 46 TTMTKREAALILGV-----RENATPDKVKEAHR--RVMVANHPDA 83 (111)
Q Consensus 46 ~~m~~~ea~~iLgl-----~~~~s~~eIk~~yr--~l~~~~HPDk 83 (111)
..|+..|++++|.= +|+.+...|.-+|. +.+++.|||+
T Consensus 71 ~kM~i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~ 115 (204)
T KOG1573|consen 71 MKMTIWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDE 115 (204)
T ss_pred hheeHHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCc
Confidence 47999999999863 45577788888874 5678899997
No 95
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=33.06 E-value=85 Score=16.90 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=18.8
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHhCC
Q 040731 3 PFLAGLAIAAA-ALAGRYGIQAWQAIKTRP 31 (111)
Q Consensus 3 ~~i~~l~i~~~-~~~~r~~~~a~~~~~~~~ 31 (111)
|++.++++... -.+.-.|.-||.|+++..
T Consensus 4 ~lL~GiVLGlipvTl~GlfvaAylQYrRg~ 33 (37)
T CHL00008 4 VLLFGIVLGLIPITLAGLFVTAYLQYRRGD 33 (37)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 66666666443 334557788999986543
No 96
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=32.38 E-value=1.1e+02 Score=20.05 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=29.4
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHhcCCCC---------CCCHHHH
Q 040731 54 ALILGVRENATPDKVKEAHRRVMVANHPDA---------GGSHYLA 90 (111)
Q Consensus 54 ~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk---------~g~~~~~ 90 (111)
...+++.++.+.++++++.++......++. ||++...
T Consensus 30 i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~ 75 (116)
T TIGR00824 30 VGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNA 75 (116)
T ss_pred eEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHH
Confidence 556778888899999999999999987654 6787543
No 97
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=32.17 E-value=63 Score=19.64 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=15.8
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHHH
Q 040731 47 TMTKREAALILGVRENATPDKVKE 70 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk~ 70 (111)
.++.++-.++|||+.+.+.++-.+
T Consensus 45 gks~eeir~~fgi~~d~t~eee~~ 68 (78)
T PF01466_consen 45 GKSPEEIRKYFGIENDLTPEEEEE 68 (78)
T ss_dssp TS-HHHHHHHHT---TSSHHHHHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHH
Confidence 567899999999999988766543
No 98
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=30.26 E-value=43 Score=17.46 Aligned_cols=15 Identities=47% Similarity=0.581 Sum_probs=12.3
Q ss_pred CCHHHHHHHcCCCCC
Q 040731 48 MTKREAALILGVREN 62 (111)
Q Consensus 48 m~~~ea~~iLgl~~~ 62 (111)
|+..|+.+.||++..
T Consensus 2 lt~~e~a~~lgis~~ 16 (49)
T TIGR01764 2 LTVEEAAEYLGVSKD 16 (49)
T ss_pred CCHHHHHHHHCCCHH
Confidence 678999999998654
No 99
>COG2879 Uncharacterized small protein [Function unknown]
Probab=29.42 E-value=45 Score=20.22 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCCCCCCH
Q 040731 70 EAHRRVMVANHPDAGGSH 87 (111)
Q Consensus 70 ~~yr~l~~~~HPDk~g~~ 87 (111)
..|-+-++..|||+-.-.
T Consensus 26 dnYVehmr~~hPd~p~mT 43 (65)
T COG2879 26 DNYVEHMRKKHPDKPPMT 43 (65)
T ss_pred HHHHHHHHHhCcCCCccc
Confidence 568888999999995533
No 100
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.37 E-value=90 Score=26.96 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=30.2
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcC
Q 040731 56 ILGVRENATPDKVKEAHRRVMVANHPDAGGSHYLASKINEAKDVMLG 102 (111)
Q Consensus 56 iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~L~~ 102 (111)
.+-.+.++..++|+.++..|.+.|||. .+...+-+|.+.|..
T Consensus 394 ~~~~Ps~~~mEqvk~k~~~m~r~YSP~-----kkl~~Llk~ckLly~ 435 (651)
T KOG2320|consen 394 FLSTPSDVLMEQVKQKFTAMQRRYSPS-----KKLHALLKACKLLYA 435 (651)
T ss_pred eccCCcHHHHHHHHHHHHHHHHhhChH-----HHHHHHHHHHHHHHH
Confidence 444555567888999999999999995 344555666665543
No 101
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=27.10 E-value=1.6e+02 Score=19.65 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=28.0
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGSHYLAS 91 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~ 91 (111)
++.|+-++++|. ||=.-+.+.+++-||++.|-++++
T Consensus 53 R~fy~ef~tsPa-----iRMLvK~~~~~~g~~kgNs~yl~~ 88 (111)
T COG2920 53 REFYEEFNTSPA-----IRMLVKAMAKKLGEEKGNSRYLYR 88 (111)
T ss_pred HHHHHHHCCCch-----HHHHHHHHHHHhCcccccHHHHHH
Confidence 577777777664 677778888899999988887764
No 102
>COG5538 SEC66 Endoplasmic reticulum translocation complex, subunit SEC66 [Cell motility and secretion]
Probab=27.05 E-value=2.4e+02 Score=20.27 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhhcCCCCCCCHHHHHHHcCCCCCCCHHHHHHHH
Q 040731 2 TPFLAGLAIAAAALAGRYGIQAWQAIKTRPPKPKIRKFYEGGFQTTMTKREAALILGVRENATPDKVKEAH 72 (111)
Q Consensus 2 ~~~i~~l~i~~~~~~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~~s~~eIk~~y 72 (111)
+|+|--++++++.+.+-.+++--++....+ .. ..-|....+.+=++.++...+.++..-++++-
T Consensus 6 vPlIy~~ili~S~v~~~~~~rK~kn~kk~p---~~----eewF~eN~~~~vyF~~k~~Np~a~~~~LkaaL 69 (180)
T COG5538 6 VPLIYLLILILSTVILMFTFRKRKNRKKAP---GD----EEWFSENLELEVYFLQKSENPGASSSTLKAAL 69 (180)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CC----ccccCCchhHHHHHHHHhhCCCchHHHHHHHH
Confidence 588888888888877655544322222222 11 11244455566777788888887766666654
No 103
>KOG4699 consensus Preprotein translocase subunit Sec66 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.05 E-value=2.4e+02 Score=20.27 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhhcCCCCCCCHHHHHHHcCCCCCCCHHHHHHHH
Q 040731 2 TPFLAGLAIAAAALAGRYGIQAWQAIKTRPPKPKIRKFYEGGFQTTMTKREAALILGVRENATPDKVKEAH 72 (111)
Q Consensus 2 ~~~i~~l~i~~~~~~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~~s~~eIk~~y 72 (111)
+|+|--++++++.+.+-.+++--++....+ .. ..-|....+.+=++.++...+.++..-++++-
T Consensus 6 vPlIy~~ili~S~v~~~~~~rK~kn~kk~p---~~----eewF~eN~~~~vyF~~k~~Np~a~~~~LkaaL 69 (180)
T KOG4699|consen 6 VPLIYLLILILSTVILMFTFRKRKNRKKAP---GD----EEWFSENLELEVYFLQKSENPGASSSTLKAAL 69 (180)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CC----ccccCCchhHHHHHHHHhhCCCchHHHHHHHH
Confidence 588888888888877655544322222222 11 11244455566777788888887766666654
No 104
>PF14893 PNMA: PNMA
Probab=26.49 E-value=62 Score=25.63 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=22.4
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHH
Q 040731 47 TMTKREAALILGVRENATPDKVKEAHRR 74 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~ 74 (111)
.++.+.+.-|+||+++++..||...-+.
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHH
Confidence 3556778889999999999999886544
No 105
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=26.17 E-value=70 Score=22.22 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=18.2
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCC
Q 040731 47 TMTKREAALILGVRENATPDKVKEAHRRVMVANHPD 82 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPD 82 (111)
.|+.+|--++||++.+.-..-+.++-++|-+-..||
T Consensus 146 g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~~~~~ 181 (185)
T PRK09649 146 GLSYADAAAVCGCPVGTIRSRVARARDALLADAEPD 181 (185)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCcc
Confidence 455555555666655544444444444444433343
No 106
>smart00427 H2B Histone H2B.
Probab=25.48 E-value=89 Score=20.11 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=11.8
Q ss_pred HHHHHhcCCCCCCCH
Q 040731 73 RRVMVANHPDAGGSH 87 (111)
Q Consensus 73 r~l~~~~HPDk~g~~ 87 (111)
.+..+..|||.+-+.
T Consensus 8 ~kvLKqVhpd~giS~ 22 (89)
T smart00427 8 YKVLKQVHPDTGISS 22 (89)
T ss_pred HHHHHHhCCCccccH
Confidence 577889999996554
No 107
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=25.35 E-value=67 Score=18.37 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=17.8
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHH
Q 040731 55 LILGVRENATPDKVKEAHRRVMV 77 (111)
Q Consensus 55 ~iLgl~~~~s~~eIk~~yr~l~~ 77 (111)
.+=|+.+..+++|.|+.-|+-..
T Consensus 3 ~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 3 RIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred ccccCCCCCCHHHHHHHHHHHHH
Confidence 34588888999999998876543
No 108
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=24.73 E-value=53 Score=16.25 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHHhcCCC
Q 040731 66 DKVKEAHRRVMVANHPD 82 (111)
Q Consensus 66 ~eIk~~yr~l~~~~HPD 82 (111)
++....++++.-..|||
T Consensus 26 ~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 26 EEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHH----------
T ss_pred HHHHHHHHHHhcccccC
Confidence 45566677777777876
No 109
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=24.71 E-value=74 Score=18.31 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 040731 46 TTMTKREAALILGVRENATPDKVKEAHRRVM 76 (111)
Q Consensus 46 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~ 76 (111)
+..+..|--+.|||++..=.+.|+++-++++
T Consensus 22 R~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 22 RRITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4578899999999998877777888888775
No 110
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=24.58 E-value=96 Score=21.95 Aligned_cols=11 Identities=18% Similarity=-0.025 Sum_probs=8.1
Q ss_pred HHHHHHHHHHH
Q 040731 89 LASKINEAKDV 99 (111)
Q Consensus 89 ~~~~i~~Ay~~ 99 (111)
.+..+|.+|+-
T Consensus 100 ~l~~lN~~Y~~ 110 (166)
T PRK13798 100 ALAAGNRAYEE 110 (166)
T ss_pred HHHHHHHHHHH
Confidence 45788888874
No 111
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=24.24 E-value=79 Score=21.36 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=12.6
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVA 78 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~ 78 (111)
++..|--++||++++.-...+.++-+++-..
T Consensus 129 ~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~ 159 (164)
T PRK12547 129 FSYEDAAAICGCAVGTIKSRVSRARNRLQEL 159 (164)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333333333333
No 112
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=23.45 E-value=99 Score=15.60 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHhcCC
Q 040731 64 TPDKVKEAHRRVMVANHP 81 (111)
Q Consensus 64 s~~eIk~~yr~l~~~~HP 81 (111)
..++.+..-|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 457788899999999984
No 113
>PF11487 RestrictionSfiI: Type II restriction enzyme SfiI; InterPro: IPR021580 SfiI is a restriction enzyme that can cleave two DNA sites simultaneously to leave 3-base 3' overhangs. It acts as a homo-tetramer and recognises a specific eight base-paid palindromic DNA sequence. After binding two copies of its recognition sequence, SfiI becomes activated leading to cleavage of all four DNA strands. The structure of SfiI consists of a central twisted beta-sheet surrounded by alpha-helices. ; PDB: 2F03_A 2EZV_A.
Probab=22.24 E-value=7.5 Score=29.15 Aligned_cols=64 Identities=22% Similarity=0.098 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhCCCCchhhhhhhcCCCCCCC---------HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCC
Q 040731 15 LAGRYGIQAWQAIKTRPPKPKIRKFYEGGFQTTMT---------KREAALILGVRENATPDKVKEAHRRVMVANHPDA 83 (111)
Q Consensus 15 ~~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~m~---------~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk 83 (111)
...|.+.||.+++.... ...++........ .++|.+.||+.+---.=--+--|++.+...|||.
T Consensus 19 ~tLrlvvqAi~dY~~~A-----~~IF~~e~dl~sd~~~~i~EDITreALd~lg~~rI~~Rl~GkiDYKra~~lf~Pd~ 91 (262)
T PF11487_consen 19 STLRLVVQAIYDYRKEA-----LEIFEEEGDLVSDEVIVIAEDITREALDRLGMPRIDQRLFGKIDYKRACYLFHPDY 91 (262)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHS--SSSTHHHHHHHHHHHHHHTTS-BSB-S----SSSSEEEEEEE--TT-
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHhhcccccccchhhhhHHHHHHHHHhCCCchhhhhhcccccceeEEEEcCcc
Confidence 46788888888776533 2222221111111 4689999999774222222334677888889985
No 114
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.14 E-value=2.8e+02 Score=23.57 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=30.4
Q ss_pred CCCHHHHHHHcCCCC-CCCHHHHHHHHHHHHHhcCCCC
Q 040731 47 TMTKREAALILGVRE-NATPDKVKEAHRRVMVANHPDA 83 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~-~~s~~eIk~~yr~l~~~~HPDk 83 (111)
.-+..++.+-|..++ ++=.+.|++.|+||.....|.+
T Consensus 318 G~~l~~aLe~l~~~nfG~L~~~I~~LYkRL~~gids~~ 355 (527)
T COG1955 318 GNTLVEALEALDRHNFGILTEDIRRLYKRLAMGIDSNK 355 (527)
T ss_pred chhHHHHHHHhhhhccccccHHHHHHHHHHHccCCHHH
Confidence 455788998888766 4677889999999999998876
No 115
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=22.13 E-value=71 Score=17.64 Aligned_cols=22 Identities=5% Similarity=0.075 Sum_probs=17.5
Q ss_pred cCCCCCCCHHHHHHHHHHHHHh
Q 040731 57 LGVRENATPDKVKEAHRRVMVA 78 (111)
Q Consensus 57 Lgl~~~~s~~eIk~~yr~l~~~ 78 (111)
-||+++++.++|+..+......
T Consensus 4 ~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 4 GNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp ESETTTSSHHHHHHHHHTTSTE
T ss_pred cCCCCcCCHHHHHHHHHHhhhc
Confidence 4788899999999988775544
No 116
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=21.39 E-value=68 Score=24.79 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCC
Q 040731 89 LASKINEAKDVMLGK 103 (111)
Q Consensus 89 ~~~~i~~Ay~~L~~~ 103 (111)
..++||+|+|+|+.-
T Consensus 129 RLkKVNEAFE~LKRr 143 (284)
T KOG3960|consen 129 RLKKVNEAFETLKRR 143 (284)
T ss_pred HHHHHHHHHHHHHhh
Confidence 458999999999853
No 117
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=21.29 E-value=62 Score=16.61 Aligned_cols=14 Identities=50% Similarity=0.710 Sum_probs=11.1
Q ss_pred CCHHHHHHHcCCCC
Q 040731 48 MTKREAALILGVRE 61 (111)
Q Consensus 48 m~~~ea~~iLgl~~ 61 (111)
|+..|+.+.||++.
T Consensus 1 ~s~~e~a~~lgvs~ 14 (49)
T cd04762 1 LTTKEAAELLGVSP 14 (49)
T ss_pred CCHHHHHHHHCcCH
Confidence 56788999999854
No 118
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=21.25 E-value=1e+02 Score=18.15 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCC
Q 040731 70 EAHRRVMVANHPDAGGSHYLASKINEAKDVMLGKT 104 (111)
Q Consensus 70 ~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~L~~~~ 104 (111)
...+...+.-||+. ...+....|.+.|..|.++.
T Consensus 14 ~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~e 47 (72)
T cd01388 14 KRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEE 47 (72)
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 34455566667863 44556667777777776554
No 119
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=20.85 E-value=2.6e+02 Score=18.48 Aligned_cols=57 Identities=9% Similarity=0.038 Sum_probs=38.5
Q ss_pred CCCHHHHHHHcCCCCC-----CCHHHHHHHHHHHHHhcCCCCC-CCHHH-----HHHHHHHHHHhcCC
Q 040731 47 TMTKREAALILGVREN-----ATPDKVKEAHRRVMVANHPDAG-GSHYL-----ASKINEAKDVMLGK 103 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~-----~s~~eIk~~yr~l~~~~HPDk~-g~~~~-----~~~i~~Ay~~L~~~ 103 (111)
-.+-+|.++.|||+-+ ++.=.|-++|.......+.+.. .+... ...+.+||+.....
T Consensus 11 LssAEdFf~ff~v~YDp~vvnV~RLHILkrf~qyl~~~~~~~~~~~e~~~~~~yr~~L~~AY~dF~~S 78 (105)
T PRK14102 11 LVDAEDYFQFFELPYDPTVVNVNRLHILKQFSQLIAEIDANFPDLSEEEKLEKYQLALEEAYQVFLTS 78 (105)
T ss_pred hccHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 4467899999999887 4567788888888877554432 23322 25678888876543
No 120
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=20.23 E-value=64 Score=19.84 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=20.1
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHhcCC
Q 040731 56 ILGVRENATPDKVKEAHRRVMVANHP 81 (111)
Q Consensus 56 iLgl~~~~s~~eIk~~yr~l~~~~HP 81 (111)
|..+..+.+.+++|+.|.++.....|
T Consensus 6 i~~Lh~G~~~e~vk~~F~~~~~~Vs~ 31 (71)
T PF04282_consen 6 IKRLHEGEDPEEVKEEFKKLFSDVSA 31 (71)
T ss_pred HHHHhCCCCHHHHHHHHHHHHCCCCH
Confidence 34566777888999999888887765
No 121
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=20.21 E-value=1.4e+02 Score=18.78 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=23.4
Q ss_pred HcCCCCCC-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 040731 56 ILGVRENA-TPDKVKEAHRRVMVANHPDAGGSHYLASKINEAK 97 (111)
Q Consensus 56 iLgl~~~~-s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay 97 (111)
--|++++. .-.++-+.|..++..+++ +++..+..|...|
T Consensus 49 ~~g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y 88 (118)
T PF07739_consen 49 EEGVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY 88 (118)
T ss_dssp HHT--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT
T ss_pred HcCCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 34667764 456688888888887766 5677777776666
Done!