Query 040731
Match_columns 111
No_of_seqs 125 out of 1418
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 18:07:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2guz_A Mitochondrial import in 99.9 7.4E-23 2.5E-27 126.2 6.5 68 39-106 2-70 (71)
2 2guz_B Mitochondrial import in 99.8 1E-19 3.4E-24 110.8 6.4 56 48-103 1-59 (65)
3 1faf_A Large T antigen; J doma 99.8 2.4E-19 8.1E-24 112.6 4.2 61 48-108 8-70 (79)
4 1iur_A KIAA0730 protein; DNAJ 99.7 7.7E-18 2.6E-22 107.8 6.1 61 44-104 9-74 (88)
5 2ys8_A RAB-related GTP-binding 99.7 6E-18 2E-22 108.4 5.1 60 50-109 26-88 (90)
6 2yua_A Williams-beuren syndrom 99.7 2.2E-17 7.4E-22 107.3 5.9 63 44-106 10-76 (99)
7 2ej7_A HCG3 gene; HCG3 protein 99.7 4.9E-17 1.7E-21 102.0 6.1 59 49-107 7-70 (82)
8 2dn9_A DNAJ homolog subfamily 99.7 2.8E-17 9.5E-22 102.4 4.7 61 47-107 3-67 (79)
9 2ctr_A DNAJ homolog subfamily 99.7 4.7E-17 1.6E-21 103.6 5.4 59 48-106 4-65 (88)
10 2o37_A Protein SIS1; HSP40, J- 99.7 5E-17 1.7E-21 104.3 5.1 59 48-106 5-64 (92)
11 2och_A Hypothetical protein DN 99.7 5.7E-17 1.9E-21 99.8 4.6 58 50-107 7-65 (73)
12 2ctp_A DNAJ homolog subfamily 99.7 3.2E-17 1.1E-21 102.0 3.1 60 47-106 3-65 (78)
13 1wjz_A 1700030A21RIK protein; 99.7 3.4E-17 1.2E-21 105.0 3.0 62 46-107 11-82 (94)
14 1gh6_A Large T antigen; tumor 99.7 2.5E-17 8.6E-22 110.0 2.4 59 50-108 7-67 (114)
15 2dmx_A DNAJ homolog subfamily 99.6 1.1E-16 3.7E-21 102.5 4.2 57 50-106 8-69 (92)
16 2ctw_A DNAJ homolog subfamily 99.6 1.8E-16 6.1E-21 104.7 5.3 61 47-107 13-77 (109)
17 2ctq_A DNAJ homolog subfamily 99.6 1.8E-16 6.2E-21 105.0 4.7 61 47-107 16-80 (112)
18 1hdj_A Human HSP40, HDJ-1; mol 99.6 1.6E-16 5.6E-21 98.5 3.6 56 51-106 3-61 (77)
19 2cug_A Mkiaa0962 protein; DNAJ 99.6 2.3E-16 8E-21 100.3 4.3 59 49-107 15-76 (88)
20 2l6l_A DNAJ homolog subfamily 99.6 4.6E-16 1.6E-20 108.0 4.7 62 46-107 5-76 (155)
21 2lgw_A DNAJ homolog subfamily 99.6 6.5E-16 2.2E-20 100.6 4.8 56 51-106 2-62 (99)
22 2qsa_A DNAJ homolog DNJ-2; J-d 99.6 7.5E-16 2.6E-20 101.4 3.2 58 50-107 14-79 (109)
23 2pf4_E Small T antigen; PP2A, 99.6 2.6E-16 8.9E-21 111.9 0.1 60 49-108 9-70 (174)
24 1bq0_A DNAJ, HSP40; chaperone, 99.6 3.5E-16 1.2E-20 102.1 0.2 56 51-106 3-62 (103)
25 3lz8_A Putative chaperone DNAJ 99.5 1.7E-15 5.7E-20 116.7 0.0 64 45-108 22-88 (329)
26 3apq_A DNAJ homolog subfamily 99.5 1.4E-14 4.9E-19 103.1 3.3 57 51-107 2-62 (210)
27 1fpo_A HSC20, chaperone protei 99.5 2.4E-14 8.2E-19 101.3 3.5 55 52-106 2-67 (171)
28 2qwo_B Putative tyrosine-prote 99.4 9.4E-15 3.2E-19 94.2 0.5 52 51-102 33-91 (92)
29 3hho_A CO-chaperone protein HS 99.4 3.8E-14 1.3E-18 100.4 3.0 57 51-107 4-71 (174)
30 3bvo_A CO-chaperone protein HS 99.4 7.6E-14 2.6E-18 101.5 3.2 58 50-107 42-110 (207)
31 3ag7_A Putative uncharacterize 99.4 9.7E-15 3.3E-19 96.2 -1.4 53 51-104 41-104 (106)
32 1n4c_A Auxilin; four helix bun 99.4 1E-14 3.5E-19 104.4 -1.6 57 51-107 117-180 (182)
33 3uo3_A J-type CO-chaperone JAC 99.3 3E-13 1E-17 96.5 -0.1 59 49-107 9-75 (181)
34 3apo_A DNAJ homolog subfamily 99.2 1.8E-12 6.1E-17 107.3 -0.8 61 47-107 17-81 (780)
35 2y4t_A DNAJ homolog subfamily 98.4 1.3E-07 4.5E-12 70.9 3.2 57 52-108 383-446 (450)
36 2pzi_A Probable serine/threoni 43.3 5.8 0.0002 32.0 0.4 43 53-99 631-675 (681)
37 1ug2_A 2610100B20RIK gene prod 30.9 27 0.00091 21.9 1.9 21 63-83 68-88 (95)
38 1q90_G Cytochrome B6F complex 29.1 65 0.0022 16.6 4.0 29 2-30 3-32 (37)
39 2p1m_A SKP1-like protein 1A; F 27.6 93 0.0032 20.4 4.4 22 47-68 127-148 (160)
40 2ast_A S-phase kinase-associat 27.6 65 0.0022 21.1 3.6 22 47-68 128-149 (159)
41 1ckt_A High mobility group 1 p 27.3 84 0.0029 17.3 3.9 35 71-105 15-50 (71)
42 3v7d_A Suppressor of kinetocho 25.3 60 0.0021 21.8 3.1 23 47-69 135-157 (169)
43 2lr8_A CAsp8-associated protei 28.7 18 0.0006 21.5 0.0 22 62-83 47-68 (70)
44 1qqr_A Streptokinase domain B; 22.0 46 0.0016 22.2 1.9 29 54-82 35-63 (138)
45 2lxi_A RNA-binding protein 10; 21.7 75 0.0026 18.4 2.8 20 57-76 7-26 (91)
46 2kv5_A FST, putative uncharact 21.4 58 0.002 16.4 1.8 8 3-10 11-18 (33)
47 1yx3_A Hypothetical protein DS 20.8 1.6E+02 0.0056 19.3 4.4 36 51-91 74-109 (132)
No 1
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.4e-23 Score=126.25 Aligned_cols=68 Identities=50% Similarity=0.810 Sum_probs=64.2
Q ss_pred hhhcCCCCCCCHHHHHHHcCCCC-CCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCCC
Q 040731 39 FYEGGFQTTMTKREAALILGVRE-NATPDKVKEAHRRVMVANHPDAGGSHYLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 39 ~~~~~~~~~m~~~ea~~iLgl~~-~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~L~~~~~r 106 (111)
|+.++++..|+.+++|+||||++ +++.++|+++||+|++++|||++|+++.|++|++||++|.++..|
T Consensus 2 ~~~g~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 2 FLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CCCSCCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred CcCCCCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 67889999999999999999999 799999999999999999999999999999999999999987554
No 2
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1e-19 Score=110.77 Aligned_cols=56 Identities=30% Similarity=0.440 Sum_probs=53.8
Q ss_pred CCHHHHHHHcCCCCC---CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCC
Q 040731 48 MTKREAALILGVREN---ATPDKVKEAHRRVMVANHPDAGGSHYLASKINEAKDVMLGK 103 (111)
Q Consensus 48 m~~~ea~~iLgl~~~---~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~L~~~ 103 (111)
|+.+||+.||||+++ ++.++|+++||+|+..||||+|||+|++.+||+|+++|..+
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 789999999999999 89999999999999999999999999999999999999754
No 3
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.77 E-value=2.4e-19 Score=112.60 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=56.5
Q ss_pred CCHHHHHHHcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 040731 48 MTKREAALILGVREN--ATPDKVKEAHRRVMVANHPDAGGSHYLASKINEAKDVMLGKTKGSG 108 (111)
Q Consensus 48 m~~~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~L~~~~~r~~ 108 (111)
.+..++|+||||+++ ++.++||++||+|++++|||++|+.+.|++|++||++|+++.+|..
T Consensus 8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~ 70 (79)
T 1faf_A 8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLR 70 (79)
T ss_dssp HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 446789999999999 9999999999999999999999999999999999999999876654
No 4
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.72 E-value=7.7e-18 Score=107.82 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=55.3
Q ss_pred CCCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHhcCCC
Q 040731 44 FQTTMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDVMLGKT 104 (111)
Q Consensus 44 ~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-----~~~~~~i~~Ay~~L~~~~ 104 (111)
...+++..++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.+..
T Consensus 9 ~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~ 74 (88)
T 1iur_A 9 VPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQA 74 (88)
T ss_dssp CCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhc
Confidence 3457889999999999999999999999999999999999775 468999999999999854
No 5
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6e-18 Score=108.38 Aligned_cols=60 Identities=30% Similarity=0.425 Sum_probs=55.4
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHHHhcCCCCCCCC
Q 040731 50 KREAALILGVRENATPDKVKEAHRRVMVANHPDAG---GSHYLASKINEAKDVMLGKTKGSGS 109 (111)
Q Consensus 50 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~---g~~~~~~~i~~Ay~~L~~~~~r~~~ 109 (111)
..++|+||||+++++.++||++||+|++++|||++ +..+.|++|++||++|.++.+|+.+
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~~ 88 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGPS 88 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccCC
Confidence 36899999999999999999999999999999997 5678999999999999999988764
No 6
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=107.30 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=56.9
Q ss_pred CCCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCC
Q 040731 44 FQTTMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 44 ~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r 106 (111)
....|+..++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.++.+|
T Consensus 10 ~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R 76 (99)
T 2yua_A 10 GDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76 (99)
T ss_dssp CCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHH
T ss_pred CCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 4457888999999999999999999999999999999999764 57899999999999998765
No 7
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.9e-17 Score=101.96 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=53.0
Q ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHHhcCCCCCC
Q 040731 49 TKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGSH-----YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 49 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-----~~~~~i~~Ay~~L~~~~~r~ 107 (111)
...++|+||||+++++.++|+++|+++++++|||++++. +.|++|++||++|+++.+|.
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 70 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 347899999999999999999999999999999997653 47899999999999997763
No 8
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.8e-17 Score=102.42 Aligned_cols=61 Identities=26% Similarity=0.328 Sum_probs=54.2
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 47 TMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++..++|+||||+++++.++|+++|+++++++|||++++ .+.|++|++||++|.++.+|.
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 67 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 3455789999999999999999999999999999999764 478999999999999987653
No 9
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.7e-17 Score=103.58 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=53.5
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHhcCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Ay~~L~~~~~r 106 (111)
++..++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|.++.+|
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R 65 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRR 65 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHH
Confidence 445789999999999999999999999999999999876 46889999999999998665
No 10
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5e-17 Score=104.28 Aligned_cols=59 Identities=24% Similarity=0.349 Sum_probs=54.2
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHhcCCCCC
Q 040731 48 MTKREAALILGVRENATPDKVKEAHRRVMVANHPDAG-GSHYLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 48 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~-g~~~~~~~i~~Ay~~L~~~~~r 106 (111)
+...++|+||||+++++.++|+++|++|++++|||++ ++.+.|++|++||++|+++.+|
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R 64 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKR 64 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHH
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHH
Confidence 3557999999999999999999999999999999996 6788999999999999998665
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.66 E-value=5.7e-17 Score=99.78 Aligned_cols=58 Identities=24% Similarity=0.357 Sum_probs=52.9
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHhcCCCCCC
Q 040731 50 KREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS-HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 50 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
..++|+||||+++++.++|+++|+++++++|||++++ .+.|++|++||++|.++.+|.
T Consensus 7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (73)
T 2och_A 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQ 65 (73)
T ss_dssp CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHH
Confidence 4589999999999999999999999999999999764 689999999999999987653
No 12
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-17 Score=102.00 Aligned_cols=60 Identities=27% Similarity=0.312 Sum_probs=53.8
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHhcCCCCC
Q 040731 47 TMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Ay~~L~~~~~r 106 (111)
.++..++|+||||+++++.++|+++|+++++++|||++++ .+.|++|++||++|.++.+|
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R 65 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKR 65 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHH
Confidence 3556799999999999999999999999999999999754 46889999999999998765
No 13
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.65 E-value=3.4e-17 Score=104.98 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC----------CHHHHHHHHHHHHHhcCCCCCC
Q 040731 46 TTMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGG----------SHYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 46 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g----------~~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
..|...++|+||||+++++.++||++|+++++++|||++. ..+.|++|++||++|.++.+|.
T Consensus 11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 82 (94)
T 1wjz_A 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK 82 (94)
T ss_dssp SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4577889999999999999999999999999999999964 2368899999999999998764
No 14
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.65 E-value=2.5e-17 Score=109.97 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=55.7
Q ss_pred HHHHHHHcCCCCCCCH--HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 040731 50 KREAALILGVRENATP--DKVKEAHRRVMVANHPDAGGSHYLASKINEAKDVMLGKTKGSG 108 (111)
Q Consensus 50 ~~ea~~iLgl~~~~s~--~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~L~~~~~r~~ 108 (111)
..++|+||||+++++. ++||++||+|++++|||++++.+.|++|++||++|+++.+|..
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~ 67 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH 67 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHH
Confidence 4689999999999988 9999999999999999999999999999999999999988875
No 15
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=102.47 Aligned_cols=57 Identities=26% Similarity=0.387 Sum_probs=51.7
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHhcCCCCC
Q 040731 50 KREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 50 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-----~~~~~~i~~Ay~~L~~~~~r 106 (111)
..++|+||||+++++.++|+++|++|++++|||++++ .+.|++|++||++|.++.+|
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 69 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 4689999999999999999999999999999999764 36789999999999998654
No 16
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.8e-16 Score=104.70 Aligned_cols=61 Identities=26% Similarity=0.406 Sum_probs=54.7
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 47 TMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++..++|+||||+++++.++||++|++|++++|||++++ .+.|++|++||++|.++.+|.
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~ 77 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 4556799999999999999999999999999999999875 468899999999999987653
No 17
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-16 Score=105.04 Aligned_cols=61 Identities=15% Similarity=0.243 Sum_probs=54.8
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 47 TMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.+...++|+||||+++++.++||++||++++++|||++++ .+.|++|++||++|.++.+|.
T Consensus 16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~ 80 (112)
T 2ctq_A 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80 (112)
T ss_dssp CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 3456899999999999999999999999999999999764 578999999999999987653
No 18
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.62 E-value=1.6e-16 Score=98.52 Aligned_cols=56 Identities=29% Similarity=0.378 Sum_probs=50.9
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHhcCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Ay~~L~~~~~r 106 (111)
.++|+||||+++++.++|+++|+++++++|||+++ ..+.|++|++||++|+++.+|
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R 61 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHH
Confidence 36899999999999999999999999999999975 357899999999999998665
No 19
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2.3e-16 Score=100.32 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=52.9
Q ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHhcCCCCCC
Q 040731 49 TKREAALILGVRENATPDKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 49 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
...++|+||||+++++.++||++||++++++|||+++ ..+.|++|++||++|.++.+|.
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 76 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHH
Confidence 3468999999999999999999999999999999975 4578999999999999987653
No 20
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.60 E-value=4.6e-16 Score=108.01 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCH----------HHHHHHHHHHHHhcCCCCCC
Q 040731 46 TTMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGSH----------YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 46 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~----------~~~~~i~~Ay~~L~~~~~r~ 107 (111)
+.|+..++|+||||+++++.++||++||++++++|||++++. +.|++|++||++|+|+.+|.
T Consensus 5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~ 76 (155)
T 2l6l_A 5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKR 76 (155)
T ss_dssp CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHC
T ss_pred ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 356678999999999999999999999999999999996532 68899999999999997764
No 21
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.60 E-value=6.5e-16 Score=100.55 Aligned_cols=56 Identities=30% Similarity=0.344 Sum_probs=50.9
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHhcCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-----~~~~~~i~~Ay~~L~~~~~r 106 (111)
.++|+||||+++++.++||++|+++++++|||++++ .+.|++|++||++|+++.+|
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R 62 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 468999999999999999999999999999999764 36789999999999998665
No 22
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.57 E-value=7.5e-16 Score=101.40 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=52.8
Q ss_pred HHHHHHHcCCCCCC-CHHHHHHHHHHHHHhcCCCCCCC-------HHHHHHHHHHHHHhcCCCCCC
Q 040731 50 KREAALILGVRENA-TPDKVKEAHRRVMVANHPDAGGS-------HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 50 ~~ea~~iLgl~~~~-s~~eIk~~yr~l~~~~HPDk~g~-------~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
..++|+||||++++ +.++||++||++++++|||++++ .+.|++|++||++|+++.+|.
T Consensus 14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~ 79 (109)
T 2qsa_A 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKT 79 (109)
T ss_dssp TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 46899999999999 99999999999999999999876 468899999999999987653
No 23
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.56 E-value=2.6e-16 Score=111.91 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=52.2
Q ss_pred CHHHHHHHcCCCCCCC--HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 040731 49 TKREAALILGVRENAT--PDKVKEAHRRVMVANHPDAGGSHYLASKINEAKDVMLGKTKGSG 108 (111)
Q Consensus 49 ~~~ea~~iLgl~~~~s--~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~L~~~~~r~~ 108 (111)
...++|+||||+++++ .++||++||++++++|||++++.+.|++|++||++|+|+.+|..
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~ 70 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH 70 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3578999999999988 69999999999999999999999999999999999999877653
No 24
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.55 E-value=3.5e-16 Score=102.14 Aligned_cols=56 Identities=27% Similarity=0.394 Sum_probs=50.8
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r 106 (111)
.++|+||||+++++.++||++||+|++++|||++++ .+.+++|++||++|+++.+|
T Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R 62 (103)
T 1bq0_A 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62 (103)
T ss_dssp CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHH
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHH
Confidence 468999999999999999999999999999999764 46889999999999998654
No 25
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.50 E-value=1.7e-15 Score=116.74 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHhcCCCCCCC
Q 040731 45 QTTMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDVMLGKTKGSG 108 (111)
Q Consensus 45 ~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Ay~~L~~~~~r~~ 108 (111)
+..|+..++|++|||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|+|+.+|..
T Consensus 22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~ 88 (329)
T 3lz8_A 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88 (329)
T ss_dssp -------------------------------------------------------------------
T ss_pred cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 346888999999999999999999999999999999999654 4689999999999999988753
No 26
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.47 E-value=1.4e-14 Score=103.10 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=51.1
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|+||||+++++.++||++||++++++|||++++ .+.|++|++||++|+++.+|.
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~ 62 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 479999999999999999999999999999999752 468899999999999987653
No 27
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.46 E-value=2.4e-14 Score=101.27 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=49.4
Q ss_pred HHHHHcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCC--H-------HHHHHHHHHHHHhcCCCCC
Q 040731 52 EAALILGVRENA--TPDKVKEAHRRVMVANHPDAGGS--H-------YLASKINEAKDVMLGKTKG 106 (111)
Q Consensus 52 ea~~iLgl~~~~--s~~eIk~~yr~l~~~~HPDk~g~--~-------~~~~~i~~Ay~~L~~~~~r 106 (111)
++|++|||++++ +..+|+++||++++++|||++++ . ..|..||+||++|+++.+|
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R 67 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMR 67 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 689999999998 99999999999999999999543 2 4689999999999998766
No 28
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.44 E-value=9.4e-15 Score=94.22 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=46.3
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-------HHHHHHHHHHHHHhcC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGS-------HYLASKINEAKDVMLG 102 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-------~~~~~~i~~Ay~~L~~ 102 (111)
+..|++|||+.+++.++||++||++++++|||++.+ ...|++|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 356999999999999999999999999999999543 3479999999999975
No 29
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.43 E-value=3.8e-14 Score=100.43 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=50.0
Q ss_pred HHHHHHcCCCCCCC--HHHHHHHHHHHHHhcCCCCCCC--H-------HHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENAT--PDKVKEAHRRVMVANHPDAGGS--H-------YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s--~~eIk~~yr~l~~~~HPDk~g~--~-------~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|+||||+++++ .++|+++||++++++|||++++ . ..|..||+||++|+++.+|.
T Consensus 4 ~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~ 71 (174)
T 3hho_A 4 MNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRA 71 (174)
T ss_dssp CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 57999999999877 9999999999999999999542 2 57899999999999987653
No 30
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.41 E-value=7.6e-14 Score=101.45 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=50.1
Q ss_pred HHHHHHHcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCC--H-------HHHHHHHHHHHHhcCCCCCC
Q 040731 50 KREAALILGVREN--ATPDKVKEAHRRVMVANHPDAGGS--H-------YLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 50 ~~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~--~-------~~~~~i~~Ay~~L~~~~~r~ 107 (111)
..++|+||||+++ ++.++|+++||+|++++|||++++ . ..|++||+||++|+|+.+|.
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~ 110 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRG 110 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4689999999986 789999999999999999999643 2 35699999999999987763
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.41 E-value=9.7e-15 Score=96.22 Aligned_cols=53 Identities=17% Similarity=0.094 Sum_probs=47.2
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCC----C-------HHHHHHHHHHHHHhcCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGG----S-------HYLASKINEAKDVMLGKT 104 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g----~-------~~~~~~i~~Ay~~L~~~~ 104 (111)
.++|+|||++. ++.++||++||++++++|||++. + .+.|++|++||++|+|+.
T Consensus 41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 58999999986 99999999999999999999942 3 468999999999999874
No 32
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.40 E-value=1e-14 Score=104.35 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=51.6
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-------HHHHHHHHHHHHHhcCCCCCC
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGS-------HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-------~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.++|++|||+++++.++||++||++++++|||++.+ .+.|++|++||++|.++.+|.
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~ 180 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKP 180 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhh
Confidence 589999999999999999999999999999999532 358899999999999998875
No 33
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.28 E-value=3e-13 Score=96.51 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=51.4
Q ss_pred CHHHHHHHc------CCCC-CCCHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHhcCCCCCC
Q 040731 49 TKREAALIL------GVRE-NATPDKVKEAHRRVMVANHPDAGG-SHYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 49 ~~~ea~~iL------gl~~-~~s~~eIk~~yr~l~~~~HPDk~g-~~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
...++|+|| |+++ +++..+|+++||+|++++|||+++ +...|++||+||++|+|+.+|.
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~ 75 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRS 75 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHH
Confidence 346899999 4655 799999999999999999999976 6778999999999999987653
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.17 E-value=1.8e-12 Score=107.34 Aligned_cols=61 Identities=23% Similarity=0.326 Sum_probs=34.1
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHhcCCCCCC
Q 040731 47 TMTKREAALILGVRENATPDKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDVMLGKTKGS 107 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Ay~~L~~~~~r~ 107 (111)
.....++|++|||+++++.++||++||++++++|||++++ .+.|++|++||++|+|+.+|.
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~ 81 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHH
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHH
Confidence 3445799999999999999999999999999999999753 357899999999999987653
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.40 E-value=1.3e-07 Score=70.86 Aligned_cols=57 Identities=26% Similarity=0.299 Sum_probs=50.0
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCHH-------HHHHHHHHHHHhcCCCCCCC
Q 040731 52 EAALILGVRENATPDKVKEAHRRVMVANHPDAGGSHY-------LASKINEAKDVMLGKTKGSG 108 (111)
Q Consensus 52 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~-------~~~~i~~Ay~~L~~~~~r~~ 108 (111)
+.|.+||+....+.+++++.|+++++++|||+..++. .|++|++||++|.|+.+|..
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred hHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 5688999999999999999999999999999977654 78999999999999988753
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=43.35 E-value=5.8 Score=32.01 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=29.7
Q ss_pred HHHHcCCCCCCCH--HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 040731 53 AALILGVRENATP--DKVKEAHRRVMVANHPDAGGSHYLASKINEAKDV 99 (111)
Q Consensus 53 a~~iLgl~~~~s~--~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay~~ 99 (111)
+|.+||++.+... .+|+++||++++..+++ .+...-|..|+.+
T Consensus 631 ~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 631 TNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV 675 (681)
T ss_dssp SSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred CcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence 6688888655433 66999999999976665 3455556666554
No 37
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=30.88 E-value=27 Score=21.88 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCC
Q 040731 63 ATPDKVKEAHRRVMVANHPDA 83 (111)
Q Consensus 63 ~s~~eIk~~yr~l~~~~HPDk 83 (111)
-++.+|+.+|++|++.+|-.+
T Consensus 68 ks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 68 KTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999987655
No 38
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=29.12 E-value=65 Score=16.62 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHhC
Q 040731 2 TPFLAGLAIAAAA-LAGRYGIQAWQAIKTR 30 (111)
Q Consensus 2 ~~~i~~l~i~~~~-~~~r~~~~a~~~~~~~ 30 (111)
-|++.++++...- .+.-.++-||.|+++.
T Consensus 3 E~lL~GIVlGlipvtlaGLfv~Ay~QyrRg 32 (37)
T 1q90_G 3 EPLLCGIVLGLVPVTIAGLFVTAYLQYLRG 32 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred chhhhhHHHhhHHHHHHHHHHHHHHHHhhc
Confidence 3677777765443 3445778899988554
No 39
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=27.64 E-value=93 Score=20.45 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=18.4
Q ss_pred CCCHHHHHHHcCCCCCCCHHHH
Q 040731 47 TMTKREAALILGVRENATPDKV 68 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eI 68 (111)
..+.++-+++|||..+.+++|-
T Consensus 127 gkt~eeir~~f~I~nd~t~eEe 148 (160)
T 2p1m_A 127 GKTPEEIRTTFNIKNDFTPEEE 148 (160)
T ss_dssp TCCHHHHHHHTTCCCCCCHHHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHH
Confidence 5688999999999999887664
No 40
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=27.57 E-value=65 Score=21.14 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=18.0
Q ss_pred CCCHHHHHHHcCCCCCCCHHHH
Q 040731 47 TMTKREAALILGVRENATPDKV 68 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eI 68 (111)
.++.++-+++|||..+.+++|-
T Consensus 128 gkt~eeir~~f~I~~d~t~eEe 149 (159)
T 2ast_A 128 GKTPEEIRKTFNIKNDFTEEEE 149 (159)
T ss_dssp SCCHHHHHHHTTCCCCSCTTHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHH
Confidence 5788999999999998776554
No 41
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=27.28 E-value=84 Score=17.31 Aligned_cols=35 Identities=29% Similarity=0.261 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCCCC-CHHHHHHHHHHHHHhcCCCC
Q 040731 71 AHRRVMVANHPDAGG-SHYLASKINEAKDVMLGKTK 105 (111)
Q Consensus 71 ~yr~l~~~~HPDk~g-~~~~~~~i~~Ay~~L~~~~~ 105 (111)
..|..++.-||+... -.+..+.|-+.|..|.++.+
T Consensus 15 ~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK 50 (71)
T 1ckt_A 15 TCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEK 50 (71)
T ss_dssp HHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTS
T ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHH
Confidence 345555667898643 36778889999999987765
No 42
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=25.26 E-value=60 Score=21.76 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=18.6
Q ss_pred CCCHHHHHHHcCCCCCCCHHHHH
Q 040731 47 TMTKREAALILGVRENATPDKVK 69 (111)
Q Consensus 47 ~m~~~ea~~iLgl~~~~s~~eIk 69 (111)
..+.+|-+++|||..+.+++|-.
T Consensus 135 gktpeeiR~~f~I~nd~t~eEe~ 157 (169)
T 3v7d_A 135 GRSPEEIRRTFNIVNDFTPEEEA 157 (169)
T ss_dssp TCCHHHHHHHHTCCCCCCHHHHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHHH
Confidence 56779999999999998877643
No 43
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=28.68 E-value=18 Score=21.50 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCC
Q 040731 62 NATPDKVKEAHRRVMVANHPDA 83 (111)
Q Consensus 62 ~~s~~eIk~~yr~l~~~~HPDk 83 (111)
+-++++|..+|+.|++.+|-.+
T Consensus 47 nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 47 DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 4678999999999999887654
No 44
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=21.98 E-value=46 Score=22.20 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=25.6
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHhcCCC
Q 040731 54 ALILGVRENATPDKVKEAHRRVMVANHPD 82 (111)
Q Consensus 54 ~~iLgl~~~~s~~eIk~~yr~l~~~~HPD 82 (111)
+..+.+....+.+|++.+=..+..+.|||
T Consensus 35 l~~k~ig~~Its~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 35 LKTLAIGDTITSQELLAQAQSILNKNHPG 63 (138)
T ss_dssp EEEECTTCEEEHHHHHHHHHHHHHHHSTT
T ss_pred hcccccCcccCHHHHHHHHHHHHHhcCCC
Confidence 55677777789999999999999999998
No 45
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=21.74 E-value=75 Score=18.36 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=17.0
Q ss_pred cCCCCCCCHHHHHHHHHHHH
Q 040731 57 LGVRENATPDKVKEAHRRVM 76 (111)
Q Consensus 57 Lgl~~~~s~~eIk~~yr~l~ 76 (111)
=||+.+++.++|+..+.+.-
T Consensus 7 ~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp ETCCSSCCHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHhC
Confidence 37889999999999998764
No 46
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=21.36 E-value=58 Score=16.42 Aligned_cols=8 Identities=38% Similarity=1.007 Sum_probs=3.8
Q ss_pred hHHHHHHH
Q 040731 3 PFLAGLAI 10 (111)
Q Consensus 3 ~~i~~l~i 10 (111)
|+++|+++
T Consensus 11 PivVGvvl 18 (33)
T 2kv5_A 11 PIFVGLVL 18 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 47
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=20.82 E-value=1.6e+02 Score=19.30 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=26.9
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 040731 51 REAALILGVRENATPDKVKEAHRRVMVANHPDAGGSHYLAS 91 (111)
Q Consensus 51 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~ 91 (111)
++.|.-.|+.|. ||..-+.+.+++.||++.+.++++
T Consensus 74 R~fY~e~~~sP~-----iR~L~K~~~~~~g~~kgns~yLy~ 109 (132)
T 1yx3_A 74 REYYEEYQIAPA-----VRVLTKAVGKKLGKEKGNSKYLYS 109 (132)
T ss_dssp HHHHHHHCCCCC-----HHHHHHHHHHHHSSSCCCHHHHHH
T ss_pred HHHHHHHCCCCh-----HHHHHHHHHHHhCcccchHHHHHH
Confidence 577777777754 666677788888999988776654
Done!