BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040732
(541 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK + +P E+ +
Sbjct: 200 IYANHPRGFALCSQRSATRSRYFVQVPLSEKVEDWSDERFWTELKAR----LPSEVAEKL 255
Query: 341 IS--KVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNL 398
++ +EK A RS P L GDA ++ P G+ +A SDV L L
Sbjct: 256 VTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRL 312
Query: 399 I 399
+
Sbjct: 313 L 313
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 14/179 (7%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGAHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK ++ ++ ++L
Sbjct: 200 IYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG- 258
Query: 341 ISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLI 399
+EK A RS P L GDA ++ P G+ +A SDV L L+
Sbjct: 259 -PSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLL 313
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK + +P E+ +
Sbjct: 200 IFANHPRGFALCSQRSATRSRYYVQVPLSEKVEDWSDERFWTELKAR----LPSEVAEKL 255
Query: 341 IS--KVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNL 398
++ +EK A RS P L GDA ++ P G+ +A SDV L L
Sbjct: 256 VTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRL 312
Query: 399 I 399
+
Sbjct: 313 L 313
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK + +P E+ +
Sbjct: 200 IYANHPRGFALCSQRSATRSRYYVQVPLSEKVEDWSDERFWTELKAR----LPSEVAEKL 255
Query: 341 IS--KVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNL 398
++ +EK A RS P L GDA ++ P G+ +A SDV L L
Sbjct: 256 VTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRL 312
Query: 399 I 399
+
Sbjct: 313 L 313
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK + +P E+ +
Sbjct: 200 IYANHPRGFALCSQRSATRSRYYVQVPLSEKVEDWSDERFWTELKAR----LPSEVAEKL 255
Query: 341 IS--KVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNL 398
++ +EK A RS P L GDA ++ P G+ +A SDV L L
Sbjct: 256 VTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRL 312
Query: 399 I 399
+
Sbjct: 313 L 313
>pdb|3OZ2|A Chain A, Crystal Structure Of A Geranylgeranyl Bacteriochlorophyll
Reductase- Like (Ta0516) From Thermoplasma Acidophilum
At 1.60 A Resolution
Length = 397
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 361 PKTTPGALLLGDAFNMRHPLTGGGMTVAL 389
P T PG L+GDA + P+TGGG+ A+
Sbjct: 273 PITXPGLXLVGDAARLIDPITGGGIANAI 301
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK + +P E+ +
Sbjct: 200 IYANHPRGFALCSQRSATRSRYYVQVPLSEKVEDWSDERFWTELKAR----LPSEVAEKL 255
Query: 341 IS--KVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNL 398
++ +EK A RS P L GDA ++ P G+ +A SDV L L
Sbjct: 256 VTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRL 312
Query: 399 I 399
+
Sbjct: 313 L 313
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK + +P E+ +
Sbjct: 200 IYANHPRGFALCSQRSATRSRYYVQVPLSEKVEDWSDERFWTELKAR----LPSEVAEKL 255
Query: 341 IS--KVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNL 398
++ +EK A RS P L GDA ++ P G+ +A SDV L L
Sbjct: 256 VTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLDLAASDVSTLYRL 312
Query: 399 I 399
+
Sbjct: 313 L 313
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 79/202 (39%), Gaps = 27/202 (13%)
Query: 206 EGTVTSLFEENGIVKGVHYKTKDG------QEHKSYAPLTIV-CDGGFSNLRRSLCNPKV 258
E TV LFE ++ V + + + P +V DG S +RR L + V
Sbjct: 120 EATVEMLFETR--IEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLDIDV 177
Query: 259 D---IPS-CFVG-MALENC-----QLPVPNHGHVVLTDPSPILFYPISSSEVRCLVDVPA 308
+ PS VG AL C +L V + G + FYPI R +V P
Sbjct: 178 ERRPYPSPMLVGTFALAPCVAERNRLYVDSQGGLAY-------FYPIGFDRARLVVSFPR 230
Query: 309 GQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGAL 368
+ +A+ + L+ ++ + DE +A + + +
Sbjct: 231 EEARELMAD-TRGESLRRRLQRFVGDESAEAIAAVTGTSRFKGIPIGYLNLDRYWADNVA 289
Query: 369 LLGDAFNMRHPLTGGGMTVALS 390
+LGDA + HP+TG GM +A+
Sbjct: 290 MLGDAIHNVHPITGQGMNLAIE 311
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 14/179 (7%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK ++ ++ ++L
Sbjct: 200 IYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG- 258
Query: 341 ISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLI 399
+EK A RS P L GDA ++ P G+ +A SDV L L+
Sbjct: 259 -PSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLL 313
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 14/179 (7%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK ++ ++ ++L
Sbjct: 200 IYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG- 258
Query: 341 ISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLI 399
+EK A RS P L GDA ++ P G+ +A SDV L L+
Sbjct: 259 -PSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLL 313
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 14/179 (7%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK ++ ++ ++L
Sbjct: 200 IYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG- 258
Query: 341 ISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLI 399
+EK A RS P L GDA ++ P G+ +A SDV L L+
Sbjct: 259 -PSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLL 313
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 14/179 (7%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK ++ ++ ++L
Sbjct: 200 IYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG- 258
Query: 341 ISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLI 399
+EK A RS P L GDA ++ P G+ +A SDV L L+
Sbjct: 259 -PSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLL 313
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 14/179 (7%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK ++ ++ ++L
Sbjct: 200 IYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG- 258
Query: 341 ISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLI 399
+EK A RS P L GDA ++ P G+ +A SDV L L+
Sbjct: 259 -PSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLL 313
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 14/179 (7%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK ++ ++ ++L
Sbjct: 200 IYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG- 258
Query: 341 ISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLI 399
+EK A RS P L GDA ++ P G+ +A SDV L L+
Sbjct: 259 -PSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLL 313
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 14/179 (7%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK ++ ++ ++L
Sbjct: 200 IYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG- 258
Query: 341 ISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLI 399
+EK A RS P L GDA ++ P G+ +A SDV L L+
Sbjct: 259 -PSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLL 313
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 14/179 (7%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK ++ ++ ++L
Sbjct: 200 IYANHPRGFALCSQRSATRSRYAVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG- 258
Query: 341 ISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLI 399
+EK A RS P L GDA ++ P G+ +A SDV L L+
Sbjct: 259 -PSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLL 313
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 14/179 (7%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFRGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK ++ ++ ++L
Sbjct: 200 IYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG- 258
Query: 341 ISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLI 399
+EK A RS P L GDA ++ P G+ +A SDV L L+
Sbjct: 259 -PSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLL 313
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ + V VP +K+ ++ LK + +P E+ +
Sbjct: 200 IYANHPRGFALCSQRSATRSQYYVQVPLSEKVEDWSDERFWTELKAR----LPSEVAEKL 255
Query: 341 IS--KVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNL 398
++ +EK A RS P L GDA ++ P G+ +A SDV L L
Sbjct: 256 VTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRL 312
Query: 399 I 399
+
Sbjct: 313 L 313
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 355 RSMPAA-PKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHD 407
RS P P + LLGDA + P TG G AL D ++L + + H+
Sbjct: 300 RSXPHLLPWKSSTVTLLGDAIHNXTPXTGSGANTALRDALLLTQKLASVASGHE 353
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 296 SSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNR 355
S++ R V VP +K+ ++ LK ++ ++ ++L +EK A R
Sbjct: 215 SATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG--PSLEKS---IAPLR 269
Query: 356 SMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLI 399
S P L GDA ++ P G+ +A SDV L L+
Sbjct: 270 SFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLL 313
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 369 LLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQY 414
LLGDA + P G G A+ D VVL + + +D AA+L +Y
Sbjct: 305 LLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQTRDI--AAALREY 348
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 369 LLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVAST 428
LLGDA ++ +P+ G + A+ D + L + D AA+L +Y E+ R+P A+
Sbjct: 307 LLGDAAHLMYPMGANGASQAILDGIELAAALARNADV--AAALREYEEA----RRPTANK 360
Query: 429 INTLAN 434
I LAN
Sbjct: 361 I-ILAN 365
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 14/179 (7%)
Query: 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI-----PSCFVGMALENCQLPVPNHGH 281
+DG+ + CDG R+S+ ++ + P ++G+ + P +H
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT---PPVSHEL 199
Query: 282 VVLTDPSPI-LFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAF 340
+ P L S++ R V VP +K+ ++ LK ++ ++ ++L
Sbjct: 200 IYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTG- 258
Query: 341 ISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLI 399
+EK SI T S P L GDA ++ P G+ +A SDV L L+
Sbjct: 259 -PSLEK-SIAPLT--SFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLL 313
>pdb|3UIT|A Chain A, Overall Structure Of PatjPALS1MALS COMPLEX
pdb|3UIT|B Chain B, Overall Structure Of PatjPALS1MALS COMPLEX
pdb|3UIT|C Chain C, Overall Structure Of PatjPALS1MALS COMPLEX
pdb|3UIT|D Chain D, Overall Structure Of PatjPALS1MALS COMPLEX
Length = 265
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 394 VLRNLIKPLQDFHDAASLNQYLESFY-TLRKPVASTINTLANSAYQVFSASSDEAREVMR 452
VL L LQ+ D N+ L +FY TL+ P+ + I TL S Q+ S EV+
Sbjct: 15 VLDRLRGKLQEKGDTTQ-NEKLSAFYETLKSPLFNQILTLQQSIKQLKGQLSHIPLEVLF 73
Query: 453 QASVDYLGLGGIYTS 467
Q V L + +++S
Sbjct: 74 QGPVKILEIEDLFSS 88
>pdb|3QN3|A Chain A, Phosphopyruvate Hydratase From Campylobacter Jejuni.
pdb|3QN3|B Chain B, Phosphopyruvate Hydratase From Campylobacter Jejuni.
pdb|3QN3|C Chain C, Phosphopyruvate Hydratase From Campylobacter Jejuni.
pdb|3QN3|D Chain D, Phosphopyruvate Hydratase From Campylobacter Jejuni
Length = 417
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 22/96 (22%)
Query: 119 EPNRIVGELLQPGGYLKLVELGLDDCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANV 178
EP ++ ++ GY V++ LD V FKDGK ++
Sbjct: 219 EPIDLLMTCIKKAGYENRVKIALD----------VASTEFFKDGKY------------HM 256
Query: 179 AGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFE 214
G++F + I+R E A P +E+G + FE
Sbjct: 257 EGKAFSSEALIERYVELCAKYPICSIEDGLAENDFE 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,925,685
Number of Sequences: 62578
Number of extensions: 597292
Number of successful extensions: 1339
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1335
Number of HSP's gapped (non-prelim): 27
length of query: 541
length of database: 14,973,337
effective HSP length: 104
effective length of query: 437
effective length of database: 8,465,225
effective search space: 3699303325
effective search space used: 3699303325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)