Query 040732
Match_columns 541
No_of_seqs 429 out of 3003
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 11:13:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1298 Squalene monooxygenase 100.0 1.1E-93 2.4E-98 682.9 44.1 449 64-531 43-495 (509)
2 PLN02985 squalene monooxygenas 100.0 1.8E-75 3.9E-80 619.5 50.8 447 64-529 41-493 (514)
3 PTZ00367 squalene epoxidase; P 100.0 5.6E-68 1.2E-72 564.2 45.7 432 65-529 32-530 (567)
4 PF08491 SE: Squalene epoxidas 100.0 3E-56 6.5E-61 421.2 27.5 272 236-509 2-276 (276)
5 COG0654 UbiH 2-polyprenyl-6-me 100.0 4.2E-45 9.1E-50 378.1 34.8 365 66-463 2-372 (387)
6 PRK08013 oxidoreductase; Provi 100.0 1.3E-44 2.9E-49 376.4 34.9 386 65-477 2-393 (400)
7 PRK08850 2-octaprenyl-6-methox 100.0 2.8E-44 6.2E-49 374.8 35.2 386 64-477 2-393 (405)
8 PRK06617 2-octaprenyl-6-methox 100.0 4.8E-43 1E-47 361.5 33.3 363 67-473 2-370 (374)
9 PRK05714 2-octaprenyl-3-methyl 100.0 2.4E-43 5.1E-48 368.1 31.4 386 66-476 2-395 (405)
10 TIGR01989 COQ6 Ubiquinone bios 100.0 3.1E-43 6.7E-48 369.8 32.1 383 67-462 1-429 (437)
11 PRK07364 2-octaprenyl-6-methox 100.0 1.4E-42 3E-47 363.8 34.2 388 62-477 14-405 (415)
12 PRK08849 2-octaprenyl-3-methyl 100.0 1.8E-42 4E-47 358.6 34.2 377 66-475 3-383 (384)
13 PRK08773 2-octaprenyl-3-methyl 100.0 1.5E-42 3.3E-47 360.5 33.3 384 64-475 4-391 (392)
14 PRK06185 hypothetical protein; 100.0 3.4E-42 7.3E-47 359.9 35.3 381 63-470 3-388 (407)
15 PRK06183 mhpA 3-(3-hydroxyphen 100.0 3.5E-42 7.6E-47 370.9 34.2 378 64-475 8-392 (538)
16 TIGR01988 Ubi-OHases Ubiquinon 100.0 5.8E-42 1.3E-46 355.5 31.4 368 68-462 1-372 (385)
17 PRK09126 hypothetical protein; 100.0 3.7E-42 7.9E-47 357.9 29.7 383 65-474 2-388 (392)
18 PRK07045 putative monooxygenas 100.0 2.8E-41 6.1E-46 350.5 36.2 360 65-456 4-373 (388)
19 PRK08020 ubiF 2-octaprenyl-3-m 100.0 6.3E-41 1.4E-45 348.4 34.1 382 65-475 4-390 (391)
20 PRK08294 phenol 2-monooxygenas 100.0 6.6E-41 1.4E-45 364.1 34.7 352 63-444 29-416 (634)
21 PRK07333 2-octaprenyl-6-methox 100.0 3.1E-41 6.7E-46 352.3 30.9 379 66-477 1-391 (403)
22 PRK07494 2-octaprenyl-6-methox 100.0 6.8E-41 1.5E-45 347.8 32.0 367 64-468 5-379 (388)
23 PRK08244 hypothetical protein; 100.0 1.3E-40 2.8E-45 355.7 34.7 372 66-477 2-378 (493)
24 TIGR01984 UbiH 2-polyprenyl-6- 100.0 3.8E-41 8.2E-46 349.1 29.7 364 68-463 1-370 (382)
25 PRK06834 hypothetical protein; 100.0 2.1E-40 4.6E-45 351.0 34.7 366 65-476 2-370 (488)
26 PRK08243 4-hydroxybenzoate 3-m 100.0 9.8E-40 2.1E-44 339.1 36.5 381 66-476 2-388 (392)
27 PRK07588 hypothetical protein; 100.0 1.2E-39 2.5E-44 338.8 34.8 358 67-460 1-368 (391)
28 PRK06753 hypothetical protein; 100.0 1.6E-39 3.5E-44 335.8 35.6 351 67-459 1-356 (373)
29 PRK06847 hypothetical protein; 100.0 2.3E-39 5E-44 334.9 36.7 360 64-459 2-372 (375)
30 PRK07608 ubiquinone biosynthes 100.0 1.6E-39 3.5E-44 337.5 33.9 369 65-462 4-375 (388)
31 PRK05732 2-octaprenyl-6-methox 100.0 8.9E-40 1.9E-44 340.3 31.4 383 65-475 2-391 (395)
32 PRK06996 hypothetical protein; 100.0 1.4E-39 2.9E-44 338.6 32.2 361 64-464 9-383 (398)
33 PRK08132 FAD-dependent oxidore 100.0 1.5E-38 3.3E-43 343.6 36.6 360 64-458 21-388 (547)
34 PRK06475 salicylate hydroxylas 100.0 3.2E-38 6.8E-43 328.7 37.1 355 67-457 3-375 (400)
35 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 2.8E-38 6.1E-43 327.3 35.1 365 66-460 2-372 (390)
36 PRK06184 hypothetical protein; 100.0 1.6E-38 3.5E-43 340.0 34.1 342 65-441 2-353 (502)
37 PRK07190 hypothetical protein; 100.0 2.1E-38 4.5E-43 335.4 33.7 337 65-441 4-348 (487)
38 PRK06126 hypothetical protein; 100.0 2.3E-38 5E-43 342.4 34.2 364 64-460 5-403 (545)
39 PF01494 FAD_binding_3: FAD bi 100.0 3.2E-39 7E-44 330.6 24.3 337 66-432 1-355 (356)
40 PRK08163 salicylate hydroxylas 100.0 9.1E-38 2E-42 325.3 34.4 359 63-458 1-372 (396)
41 PRK05868 hypothetical protein; 100.0 2.1E-37 4.6E-42 318.6 33.2 352 67-455 2-366 (372)
42 PRK07538 hypothetical protein; 100.0 1.1E-36 2.4E-41 318.3 35.0 337 67-435 1-361 (413)
43 TIGR03219 salicylate_mono sali 100.0 6.9E-37 1.5E-41 320.2 30.2 343 67-444 1-377 (414)
44 PRK07236 hypothetical protein; 100.0 3E-36 6.5E-41 312.5 32.1 334 64-443 4-378 (386)
45 PLN02927 antheraxanthin epoxid 100.0 1.3E-34 2.7E-39 309.9 36.2 349 63-440 78-446 (668)
46 PLN00093 geranylgeranyl diphos 100.0 5.8E-31 1.2E-35 275.4 35.7 342 64-455 37-398 (450)
47 KOG2614 Kynurenine 3-monooxyge 100.0 2.6E-32 5.6E-37 267.6 22.8 336 67-438 3-354 (420)
48 TIGR02023 BchP-ChlP geranylger 100.0 4.2E-30 9E-35 266.5 37.6 323 67-443 1-338 (388)
49 TIGR02028 ChlP geranylgeranyl 100.0 7.9E-30 1.7E-34 264.5 35.3 342 67-455 1-359 (398)
50 TIGR02032 GG-red-SF geranylger 100.0 3.1E-29 6.6E-34 250.3 28.7 284 67-399 1-295 (295)
51 COG0644 FixC Dehydrogenases (f 100.0 6.4E-28 1.4E-32 250.3 32.6 318 65-429 2-328 (396)
52 PRK08255 salicylyl-CoA 5-hydro 100.0 4.4E-29 9.5E-34 277.8 24.7 321 67-443 1-342 (765)
53 PRK11445 putative oxidoreducta 100.0 3.6E-28 7.7E-33 248.4 26.0 309 67-426 2-317 (351)
54 KOG3855 Monooxygenase involved 100.0 1.1E-28 2.4E-33 239.8 19.5 364 63-444 33-449 (481)
55 PRK10015 oxidoreductase; Provi 99.9 4.2E-25 9.1E-30 230.9 33.2 363 65-462 4-395 (429)
56 TIGR01790 carotene-cycl lycope 99.9 5.3E-25 1.2E-29 228.6 31.8 306 68-428 1-321 (388)
57 PRK10157 putative oxidoreducta 99.9 1.1E-23 2.4E-28 220.5 34.3 324 65-426 4-356 (428)
58 PF04820 Trp_halogenase: Trypt 99.9 2.4E-24 5.3E-29 225.8 23.5 336 68-452 1-397 (454)
59 PLN02697 lycopene epsilon cycl 99.9 5.3E-23 1.2E-27 217.4 33.1 342 64-463 106-474 (529)
60 PLN02463 lycopene beta cyclase 99.9 3E-21 6.6E-26 201.2 35.4 287 64-402 26-331 (447)
61 TIGR01789 lycopene_cycl lycope 99.9 3E-21 6.5E-26 197.9 29.3 304 68-436 1-317 (370)
62 PF05834 Lycopene_cycl: Lycope 99.9 5.5E-19 1.2E-23 181.9 30.5 280 68-401 1-290 (374)
63 PRK06481 fumarate reductase fl 99.6 1.8E-13 4E-18 146.4 21.5 66 187-253 191-257 (506)
64 PRK04176 ribulose-1,5-biphosph 99.6 6.7E-14 1.5E-18 135.9 15.6 150 64-255 23-181 (257)
65 KOG2415 Electron transfer flav 99.5 1.2E-12 2.6E-17 128.2 22.1 307 63-402 73-421 (621)
66 TIGR00292 thiazole biosynthesi 99.5 1.6E-13 3.5E-18 132.7 15.7 147 65-253 20-176 (254)
67 KOG0042 Glycerol-3-phosphate d 99.5 5.5E-14 1.2E-18 141.8 10.0 237 64-307 65-351 (680)
68 COG0578 GlpA Glycerol-3-phosph 99.5 2.7E-12 5.9E-17 133.5 21.2 225 64-299 10-282 (532)
69 PF01946 Thi4: Thi4 family; PD 99.5 1.1E-12 2.4E-17 119.5 14.4 146 65-252 16-170 (230)
70 PRK13369 glycerol-3-phosphate 99.5 5.4E-12 1.2E-16 135.1 21.5 184 63-251 3-220 (502)
71 COG1635 THI4 Ribulose 1,5-bisp 99.4 1.8E-12 3.8E-17 117.3 14.3 147 65-253 29-184 (262)
72 COG2081 Predicted flavoprotein 99.4 9.6E-13 2.1E-17 130.1 13.6 157 65-248 2-168 (408)
73 PRK12266 glpD glycerol-3-phosp 99.4 2.1E-11 4.5E-16 130.6 25.1 180 63-248 3-217 (508)
74 PF01266 DAO: FAD dependent ox 99.4 7.3E-13 1.6E-17 135.6 13.1 173 68-249 1-205 (358)
75 PLN02464 glycerol-3-phosphate 99.4 2.8E-11 6E-16 132.2 23.9 73 182-255 228-305 (627)
76 TIGR01377 soxA_mon sarcosine o 99.4 1.3E-10 2.7E-15 120.5 25.8 70 181-257 140-211 (380)
77 PRK05192 tRNA uridine 5-carbox 99.4 9.6E-12 2.1E-16 132.1 16.6 154 64-248 2-158 (618)
78 TIGR01373 soxB sarcosine oxida 99.4 1.1E-10 2.5E-15 122.0 23.6 223 64-302 28-293 (407)
79 PRK01747 mnmC bifunctional tRN 99.4 8.2E-11 1.8E-15 130.3 23.6 173 66-248 260-464 (662)
80 PRK11259 solA N-methyltryptoph 99.4 1.9E-10 4.1E-15 119.0 24.7 60 182-248 145-205 (376)
81 PF03486 HI0933_like: HI0933-l 99.3 1E-11 2.2E-16 128.0 14.1 158 67-248 1-167 (409)
82 PRK12409 D-amino acid dehydrog 99.3 3.7E-10 8.1E-15 118.2 25.6 70 183-254 194-266 (410)
83 PF01134 GIDA: Glucose inhibit 99.3 1.2E-11 2.7E-16 124.8 13.0 149 68-247 1-152 (392)
84 PRK11101 glpA sn-glycerol-3-ph 99.3 4.2E-11 9.2E-16 129.3 17.3 184 65-255 5-220 (546)
85 PRK11728 hydroxyglutarate oxid 99.3 6.7E-11 1.4E-15 123.1 17.7 176 66-256 2-214 (393)
86 PLN02661 Putative thiazole syn 99.3 5.8E-11 1.3E-15 118.1 14.8 144 64-248 90-245 (357)
87 PRK00711 D-amino acid dehydrog 99.3 8.4E-10 1.8E-14 115.8 23.9 60 183-248 198-258 (416)
88 PF12831 FAD_oxidored: FAD dep 99.2 4.5E-12 9.7E-17 132.9 5.0 155 68-254 1-156 (428)
89 PRK07121 hypothetical protein; 99.2 1.9E-10 4.2E-15 123.1 16.5 66 186-253 177-245 (492)
90 PF00890 FAD_binding_2: FAD bi 99.2 8.3E-11 1.8E-15 123.5 13.4 63 185-248 140-204 (417)
91 PRK08274 tricarballylate dehyd 99.2 1.7E-10 3.8E-15 122.7 15.8 67 186-253 131-198 (466)
92 KOG2820 FAD-dependent oxidored 99.2 6.3E-10 1.4E-14 107.0 17.2 182 62-256 3-223 (399)
93 COG0579 Predicted dehydrogenas 99.2 3E-10 6.4E-15 116.2 15.7 182 65-257 2-222 (429)
94 TIGR01320 mal_quin_oxido malat 99.2 3.9E-10 8.5E-15 119.6 17.2 76 180-256 172-250 (483)
95 TIGR01813 flavo_cyto_c flavocy 99.2 1.5E-10 3.3E-15 122.3 13.6 66 186-252 130-197 (439)
96 PRK05257 malate:quinone oxidor 99.2 4.8E-10 1E-14 119.0 16.1 77 180-256 177-256 (494)
97 TIGR01812 sdhA_frdA_Gneg succi 99.2 5.8E-10 1.2E-14 121.5 17.1 64 187-251 130-195 (566)
98 PRK06069 sdhA succinate dehydr 99.2 6.8E-10 1.5E-14 120.9 17.5 65 187-251 138-204 (577)
99 TIGR00551 nadB L-aspartate oxi 99.2 3.2E-10 7E-15 121.1 14.5 65 186-251 128-193 (488)
100 TIGR01176 fum_red_Fp fumarate 99.2 7.4E-10 1.6E-14 120.1 16.8 63 187-249 133-197 (580)
101 PRK06175 L-aspartate oxidase; 99.2 4E-10 8.6E-15 118.3 14.1 62 187-249 129-191 (433)
102 PRK09231 fumarate reductase fl 99.1 5.5E-10 1.2E-14 121.4 14.6 64 187-250 134-199 (582)
103 PRK12834 putative FAD-binding 99.1 1.2E-09 2.6E-14 118.3 16.7 67 187-253 149-233 (549)
104 TIGR00136 gidA glucose-inhibit 99.1 1.2E-09 2.6E-14 116.2 16.1 156 67-253 1-160 (617)
105 PRK12844 3-ketosteroid-delta-1 99.1 1.9E-09 4E-14 116.8 17.4 65 187-253 209-275 (557)
106 PRK06452 sdhA succinate dehydr 99.1 6.6E-10 1.4E-14 120.5 13.9 62 187-249 137-200 (566)
107 PRK05945 sdhA succinate dehydr 99.1 9.6E-10 2.1E-14 119.6 14.9 62 187-249 136-199 (575)
108 PRK07803 sdhA succinate dehydr 99.1 2.9E-09 6.2E-14 116.7 17.8 63 187-249 139-215 (626)
109 PRK13339 malate:quinone oxidor 99.1 2.3E-09 5.1E-14 113.0 16.2 76 180-256 178-257 (497)
110 PRK06854 adenylylsulfate reduc 99.1 1.3E-09 2.8E-14 119.0 14.7 64 185-248 131-196 (608)
111 PRK12845 3-ketosteroid-delta-1 99.1 3.4E-09 7.4E-14 114.5 17.7 63 188-252 219-283 (564)
112 PRK07573 sdhA succinate dehydr 99.1 1E-09 2.3E-14 120.3 13.8 60 189-249 173-234 (640)
113 PTZ00139 Succinate dehydrogena 99.1 2.4E-09 5.1E-14 117.1 16.3 62 187-249 167-231 (617)
114 PRK07804 L-aspartate oxidase; 99.1 1.3E-09 2.9E-14 117.5 14.2 63 187-251 145-214 (541)
115 PRK06263 sdhA succinate dehydr 99.1 1.5E-09 3.3E-14 117.4 14.4 62 187-249 135-199 (543)
116 PRK08958 sdhA succinate dehydr 99.1 1.9E-09 4.2E-14 117.2 14.7 62 187-249 144-208 (588)
117 COG0665 DadA Glycine/D-amino a 99.1 2.9E-08 6.2E-13 103.1 22.7 63 181-249 151-214 (387)
118 PRK08641 sdhA succinate dehydr 99.1 3.6E-09 7.8E-14 115.2 16.5 63 187-249 134-202 (589)
119 PLN00128 Succinate dehydrogena 99.0 2.5E-09 5.5E-14 116.9 15.1 62 187-249 188-252 (635)
120 PLN02172 flavin-containing mon 99.0 1.9E-09 4.1E-14 113.6 13.6 160 63-248 7-174 (461)
121 PRK07057 sdhA succinate dehydr 99.0 5.3E-09 1.1E-13 114.0 17.2 62 187-249 149-213 (591)
122 PRK12835 3-ketosteroid-delta-1 99.0 2.9E-09 6.4E-14 115.7 15.0 64 188-253 215-281 (584)
123 PRK12839 hypothetical protein; 99.0 5.6E-09 1.2E-13 113.2 17.1 64 185-249 213-278 (572)
124 PRK12837 3-ketosteroid-delta-1 99.0 5.8E-09 1.3E-13 112.0 17.0 66 187-253 174-241 (513)
125 PRK09078 sdhA succinate dehydr 99.0 3.6E-09 7.9E-14 115.4 15.3 62 187-249 150-214 (598)
126 KOG2853 Possible oxidoreductas 99.0 4.6E-09 1E-13 101.0 14.0 187 61-255 81-329 (509)
127 PRK12842 putative succinate de 99.0 5.7E-09 1.2E-13 113.6 16.7 63 187-251 215-279 (574)
128 PRK09077 L-aspartate oxidase; 99.0 2.7E-09 5.8E-14 115.1 13.8 65 187-251 139-211 (536)
129 PRK07843 3-ketosteroid-delta-1 99.0 4.7E-09 1E-13 113.7 15.7 65 187-253 209-275 (557)
130 PTZ00306 NADH-dependent fumara 99.0 4.7E-09 1E-13 122.5 15.5 63 188-250 546-623 (1167)
131 PLN02815 L-aspartate oxidase 99.0 3.9E-09 8.5E-14 114.4 13.8 63 187-249 156-224 (594)
132 PRK08205 sdhA succinate dehydr 99.0 6.6E-09 1.4E-13 113.2 15.5 62 187-249 141-208 (583)
133 PRK07395 L-aspartate oxidase; 99.0 6.1E-09 1.3E-13 112.4 14.5 61 187-248 135-198 (553)
134 PRK08401 L-aspartate oxidase; 99.0 2.7E-09 5.9E-14 113.2 11.5 59 187-251 121-179 (466)
135 PRK12843 putative FAD-binding 99.0 1.5E-08 3.3E-13 110.2 17.4 65 187-253 222-288 (578)
136 TIGR03329 Phn_aa_oxid putative 99.0 1.1E-08 2.5E-13 108.5 16.1 60 181-248 178-238 (460)
137 PTZ00383 malate:quinone oxidor 99.0 1E-08 2.2E-13 108.6 15.4 70 181-255 206-282 (497)
138 PRK06134 putative FAD-binding 99.0 1.4E-08 3.1E-13 110.5 16.9 62 187-250 218-281 (581)
139 PRK08071 L-aspartate oxidase; 99.0 5E-09 1.1E-13 112.3 13.0 61 187-249 131-192 (510)
140 TIGR03364 HpnW_proposed FAD de 99.0 1E-08 2.2E-13 105.6 14.8 45 67-112 1-45 (365)
141 PRK08275 putative oxidoreducta 99.0 8.2E-09 1.8E-13 112.0 14.5 62 187-249 138-202 (554)
142 PRK08626 fumarate reductase fl 98.9 7.2E-09 1.6E-13 113.9 13.8 62 187-249 159-222 (657)
143 TIGR00275 flavoprotein, HI0933 98.9 1.2E-08 2.6E-13 106.1 13.7 152 70-247 1-160 (400)
144 KOG2852 Possible oxidoreductas 98.9 1.6E-07 3.5E-12 88.6 19.3 170 64-248 8-209 (380)
145 TIGR01811 sdhA_Bsu succinate d 98.9 1.5E-08 3.3E-13 110.5 14.5 62 188-249 131-198 (603)
146 TIGR02734 crtI_fam phytoene de 98.9 1.8E-07 4E-12 100.6 22.7 63 186-253 219-282 (502)
147 PRK07512 L-aspartate oxidase; 98.9 1.6E-08 3.4E-13 108.6 14.1 62 187-249 137-199 (513)
148 COG0492 TrxB Thioredoxin reduc 98.9 1.6E-08 3.4E-13 100.3 12.8 114 65-248 2-116 (305)
149 PF13738 Pyr_redox_3: Pyridine 98.9 2.7E-09 5.9E-14 100.2 7.0 60 183-248 79-139 (203)
150 TIGR01292 TRX_reduct thioredox 98.9 2.3E-08 5.1E-13 99.8 13.9 112 67-247 1-112 (300)
151 PRK05335 tRNA (uracil-5-)-meth 98.9 1.8E-08 4E-13 102.9 12.3 123 67-213 3-126 (436)
152 PLN02612 phytoene desaturase 98.9 8.1E-07 1.7E-11 96.5 25.9 37 64-100 91-127 (567)
153 PRK06467 dihydrolipoamide dehy 98.9 1.6E-08 3.4E-13 107.6 12.1 37 63-99 1-37 (471)
154 TIGR02061 aprA adenosine phosp 98.9 3E-08 6.4E-13 107.7 14.3 60 188-248 128-192 (614)
155 PRK05976 dihydrolipoamide dehy 98.9 1.8E-08 3.9E-13 107.4 12.2 36 63-98 1-36 (472)
156 COG0029 NadB Aspartate oxidase 98.8 4.7E-08 1E-12 99.4 13.4 64 187-250 134-199 (518)
157 PRK15317 alkyl hydroperoxide r 98.8 6.2E-08 1.3E-12 104.3 15.1 113 64-247 209-322 (517)
158 PLN02576 protoporphyrinogen ox 98.8 1.9E-06 4.1E-11 92.7 26.5 39 64-102 10-49 (496)
159 COG2072 TrkA Predicted flavopr 98.8 4.7E-08 1E-12 102.6 13.4 40 63-102 5-45 (443)
160 KOG1399 Flavin-containing mono 98.8 7.8E-08 1.7E-12 99.8 14.5 147 64-247 4-153 (448)
161 TIGR00562 proto_IX_ox protopor 98.8 1.6E-06 3.5E-11 92.3 25.1 35 67-101 3-41 (462)
162 PRK13800 putative oxidoreducta 98.8 4.6E-08 1E-12 111.7 13.8 62 188-249 141-207 (897)
163 TIGR03143 AhpF_homolog putativ 98.8 7.9E-08 1.7E-12 104.3 14.2 114 64-248 2-115 (555)
164 TIGR02731 phytoene_desat phyto 98.8 1.9E-06 4.1E-11 91.6 24.2 73 68-144 1-75 (453)
165 PRK05249 soluble pyridine nucl 98.8 6E-08 1.3E-12 103.2 12.3 36 64-99 3-38 (461)
166 PRK07233 hypothetical protein; 98.7 1.2E-06 2.5E-11 92.5 21.7 35 68-102 1-35 (434)
167 TIGR03140 AhpF alkyl hydropero 98.7 1.2E-07 2.7E-12 101.9 14.1 113 64-247 210-323 (515)
168 PLN02487 zeta-carotene desatur 98.7 6.1E-06 1.3E-10 89.0 26.9 73 65-145 74-152 (569)
169 PRK14694 putative mercuric red 98.7 7.4E-08 1.6E-12 102.6 12.1 35 64-98 4-38 (468)
170 TIGR02732 zeta_caro_desat caro 98.7 2.7E-06 5.8E-11 90.5 23.9 35 68-102 1-35 (474)
171 KOG2404 Fumarate reductase, fl 98.7 4.6E-08 1E-12 93.5 8.7 62 188-249 145-208 (477)
172 PRK06115 dihydrolipoamide dehy 98.7 9.7E-08 2.1E-12 101.5 12.3 35 65-99 2-36 (466)
173 KOG2844 Dimethylglycine dehydr 98.7 1.2E-07 2.6E-12 98.8 12.2 76 181-262 182-259 (856)
174 TIGR00137 gid_trmFO tRNA:m(5)U 98.7 1E-07 2.2E-12 98.2 11.7 123 67-213 1-124 (433)
175 PRK06416 dihydrolipoamide dehy 98.7 2.1E-07 4.5E-12 99.1 14.3 35 65-99 3-37 (462)
176 PRK11883 protoporphyrinogen ox 98.7 1.7E-05 3.6E-10 84.2 28.6 34 68-101 2-37 (451)
177 COG1233 Phytoene dehydrogenase 98.7 1.4E-07 3.1E-12 100.5 12.6 55 186-245 224-279 (487)
178 PF06039 Mqo: Malate:quinone o 98.7 2.1E-07 4.4E-12 94.6 12.8 69 180-248 175-245 (488)
179 PLN02507 glutathione reductase 98.7 1.8E-07 3.9E-12 100.1 13.3 35 64-98 23-57 (499)
180 TIGR02485 CobZ_N-term precorri 98.7 2E-07 4.4E-12 98.2 13.5 63 187-253 124-189 (432)
181 TIGR01424 gluta_reduc_2 glutat 98.7 2.2E-07 4.7E-12 98.4 13.5 33 66-98 2-34 (446)
182 PRK12416 protoporphyrinogen ox 98.7 1.4E-05 3E-10 85.2 27.0 34 68-101 3-42 (463)
183 PRK13977 myosin-cross-reactive 98.7 6.6E-07 1.4E-11 94.8 16.5 61 187-248 227-294 (576)
184 PRK08010 pyridine nucleotide-d 98.7 1.3E-07 2.9E-12 99.9 11.3 35 65-99 2-36 (441)
185 PRK06327 dihydrolipoamide dehy 98.7 1.7E-07 3.6E-12 100.0 12.0 34 64-97 2-35 (475)
186 PRK06116 glutathione reductase 98.7 2.5E-07 5.4E-12 98.1 13.2 36 63-98 1-36 (450)
187 COG1053 SdhA Succinate dehydro 98.6 1.6E-07 3.6E-12 100.6 11.2 65 187-251 139-206 (562)
188 PRK13748 putative mercuric red 98.6 3.4E-07 7.4E-12 99.9 13.3 34 65-98 97-130 (561)
189 PRK10262 thioredoxin reductase 98.6 6.3E-07 1.4E-11 90.6 14.0 35 64-98 4-38 (321)
190 PRK07208 hypothetical protein; 98.6 9.1E-07 2E-11 94.7 15.9 39 63-101 1-39 (479)
191 KOG2665 Predicted FAD-dependen 98.6 5.6E-07 1.2E-11 86.0 12.2 55 64-118 46-102 (453)
192 COG0445 GidA Flavin-dependent 98.6 5.3E-08 1.2E-12 99.9 5.6 153 64-248 2-159 (621)
193 PRK06370 mercuric reductase; V 98.6 3.1E-07 6.7E-12 97.7 11.5 37 63-99 2-38 (463)
194 TIGR01421 gluta_reduc_1 glutat 98.6 2.9E-07 6.3E-12 97.4 10.8 33 66-98 2-34 (450)
195 PF00743 FMO-like: Flavin-bind 98.6 4.3E-07 9.4E-12 97.2 11.7 145 67-248 2-151 (531)
196 PRK07818 dihydrolipoamide dehy 98.6 3.7E-07 8.1E-12 97.2 11.2 35 64-98 2-36 (466)
197 PTZ00363 rab-GDP dissociation 98.5 2.5E-05 5.4E-10 81.8 24.2 41 63-103 1-41 (443)
198 PF00732 GMC_oxred_N: GMC oxid 98.5 1.6E-06 3.5E-11 86.5 14.1 62 188-249 194-260 (296)
199 COG3380 Predicted NAD/FAD-depe 98.5 3.9E-07 8.4E-12 85.6 8.6 33 68-100 3-35 (331)
200 PRK07251 pyridine nucleotide-d 98.5 1E-06 2.2E-11 93.1 13.1 35 65-99 2-36 (438)
201 PRK14727 putative mercuric red 98.5 1.1E-06 2.4E-11 93.8 13.3 36 64-99 14-49 (479)
202 TIGR01350 lipoamide_DH dihydro 98.5 4.3E-07 9.3E-12 96.7 9.7 32 66-97 1-32 (461)
203 COG1231 Monoamine oxidase [Ami 98.5 1.5E-05 3.2E-10 81.0 19.6 45 64-112 5-49 (450)
204 TIGR02730 carot_isom carotene 98.5 1.1E-06 2.3E-11 94.4 11.9 64 186-254 229-293 (493)
205 PF00070 Pyr_redox: Pyridine n 98.4 2.9E-06 6.2E-11 66.8 10.8 33 68-100 1-33 (80)
206 PRK07845 flavoprotein disulfid 98.4 1.8E-06 3.9E-11 91.9 12.5 32 68-99 3-34 (466)
207 COG3573 Predicted oxidoreducta 98.4 4.2E-06 9E-11 80.8 13.4 38 64-101 3-40 (552)
208 PLN02546 glutathione reductase 98.4 2.2E-06 4.9E-11 92.4 13.1 34 64-97 77-110 (558)
209 COG1232 HemY Protoporphyrinoge 98.4 5.8E-06 1.3E-10 85.6 14.9 70 68-146 2-79 (444)
210 PRK06912 acoL dihydrolipoamide 98.4 1.9E-06 4E-11 91.6 11.5 32 68-99 2-33 (458)
211 PF07992 Pyr_redox_2: Pyridine 98.4 7.6E-07 1.7E-11 83.3 7.5 32 68-99 1-32 (201)
212 TIGR02352 thiamin_ThiO glycine 98.4 3.4E-05 7.3E-10 78.3 20.2 62 181-248 132-194 (337)
213 PF13450 NAD_binding_8: NAD(P) 98.4 4.6E-07 9.9E-12 68.7 4.6 31 71-101 1-31 (68)
214 TIGR03378 glycerol3P_GlpB glyc 98.4 7.9E-06 1.7E-10 84.0 14.9 63 183-248 260-324 (419)
215 PRK06292 dihydrolipoamide dehy 98.4 1.7E-06 3.7E-11 92.0 10.6 34 65-98 2-35 (460)
216 PRK02106 choline dehydrogenase 98.4 1E-05 2.2E-10 88.2 16.7 58 193-250 207-265 (560)
217 TIGR01438 TGR thioredoxin and 98.4 3.2E-06 6.9E-11 90.2 12.4 33 66-98 2-34 (484)
218 TIGR01372 soxA sarcosine oxida 98.4 1.1E-05 2.4E-10 93.2 17.6 38 64-101 161-198 (985)
219 PTZ00058 glutathione reductase 98.4 7.5E-07 1.6E-11 96.1 7.4 35 64-98 46-80 (561)
220 TIGR02462 pyranose_ox pyranose 98.3 6.6E-06 1.4E-10 87.8 14.1 58 198-255 225-287 (544)
221 TIGR02053 MerA mercuric reduct 98.3 2.7E-06 5.8E-11 90.6 10.9 33 67-99 1-33 (463)
222 PF13454 NAD_binding_9: FAD-NA 98.3 3.5E-06 7.6E-11 75.5 10.0 30 70-99 1-35 (156)
223 PTZ00052 thioredoxin reductase 98.3 5.6E-06 1.2E-10 88.7 12.9 35 64-98 3-37 (499)
224 TIGR01423 trypano_reduc trypan 98.3 4.1E-06 9E-11 89.2 11.5 34 65-98 2-36 (486)
225 PRK12779 putative bifunctional 98.3 3.4E-06 7.4E-11 96.2 11.3 36 64-99 304-339 (944)
226 PLN02785 Protein HOTHEAD 98.3 2.3E-05 5E-10 85.2 16.9 37 63-100 52-88 (587)
227 PRK09897 hypothetical protein; 98.3 1.6E-05 3.5E-10 85.0 15.1 36 67-102 2-39 (534)
228 COG1249 Lpd Pyruvate/2-oxoglut 98.2 3.9E-06 8.5E-11 87.6 9.4 36 64-99 2-37 (454)
229 TIGR01810 betA choline dehydro 98.2 2.5E-05 5.5E-10 84.6 15.5 60 189-248 196-256 (532)
230 PRK05329 anaerobic glycerol-3- 98.2 2.6E-05 5.7E-10 81.0 14.2 57 187-246 260-317 (422)
231 KOG2311 NAD/FAD-utilizing prot 98.2 4.5E-06 9.7E-11 84.1 7.9 152 64-246 26-185 (679)
232 COG3634 AhpF Alkyl hydroperoxi 98.1 3.6E-06 7.9E-11 81.6 6.0 117 64-252 209-328 (520)
233 TIGR03377 glycerol3P_GlpA glyc 98.1 7.5E-05 1.6E-09 80.6 16.9 73 182-255 124-199 (516)
234 PTZ00153 lipoamide dehydrogena 98.1 2.5E-05 5.5E-10 85.6 13.3 34 65-98 115-148 (659)
235 PRK09564 coenzyme A disulfide 98.1 1.5E-05 3.2E-10 84.5 11.3 32 68-99 2-35 (444)
236 PRK13512 coenzyme A disulfide 98.1 2.1E-05 4.5E-10 83.1 11.3 33 68-100 3-37 (438)
237 KOG1335 Dihydrolipoamide dehyd 98.1 7.2E-06 1.6E-10 80.7 7.0 37 65-101 38-74 (506)
238 PRK09853 putative selenate red 98.1 2.4E-05 5.2E-10 88.4 12.0 36 64-99 537-572 (1019)
239 TIGR03197 MnmC_Cterm tRNA U-34 98.1 0.00026 5.6E-09 73.4 19.1 61 181-248 130-191 (381)
240 PRK11749 dihydropyrimidine deh 98.1 7E-05 1.5E-09 79.6 15.1 38 64-101 138-175 (457)
241 TIGR01350 lipoamide_DH dihydro 98.1 4.8E-05 1E-09 81.0 13.8 102 66-250 170-272 (461)
242 KOG2960 Protein involved in th 98.1 2.7E-06 5.8E-11 76.9 3.1 142 65-249 75-236 (328)
243 PRK07846 mycothione reductase; 98.0 2.2E-05 4.8E-10 83.1 10.5 32 66-99 1-32 (451)
244 PRK09754 phenylpropionate diox 98.0 2.5E-05 5.5E-10 81.4 10.4 35 66-100 3-39 (396)
245 TIGR03169 Nterm_to_SelD pyridi 98.0 2.9E-05 6.4E-10 79.9 9.8 33 68-100 1-36 (364)
246 PRK07818 dihydrolipoamide dehy 98.0 0.00018 4E-09 76.6 16.1 104 66-250 172-276 (466)
247 KOG0029 Amine oxidase [Seconda 98.0 8.2E-06 1.8E-10 86.4 5.6 39 63-101 12-50 (501)
248 PTZ00318 NADH dehydrogenase-li 98.0 4.8E-05 1E-09 80.0 11.3 35 65-99 9-43 (424)
249 PRK04965 NADH:flavorubredoxin 98.0 8E-05 1.7E-09 77.1 12.7 99 66-248 141-240 (377)
250 KOG3923 D-aspartate oxidase [A 97.9 0.00024 5.3E-09 68.0 14.1 92 181-297 146-237 (342)
251 PF13434 K_oxygenase: L-lysine 97.9 4.6E-05 9.9E-10 77.3 10.0 153 66-251 2-163 (341)
252 PRK12778 putative bifunctional 97.9 3E-05 6.6E-10 87.4 9.6 36 64-99 429-464 (752)
253 KOG0404 Thioredoxin reductase 97.9 9.6E-05 2.1E-09 67.7 10.7 120 63-247 5-124 (322)
254 PRK05249 soluble pyridine nucl 97.9 0.00013 2.8E-09 77.7 13.7 100 66-250 175-275 (461)
255 PRK12771 putative glutamate sy 97.9 0.00016 3.5E-09 78.9 14.7 38 64-101 135-172 (564)
256 COG1249 Lpd Pyruvate/2-oxoglut 97.9 0.00018 4E-09 75.2 13.7 103 65-250 172-275 (454)
257 PRK06912 acoL dihydrolipoamide 97.9 0.00019 4.1E-09 76.3 14.0 100 66-249 170-270 (458)
258 PRK06416 dihydrolipoamide dehy 97.9 0.00027 5.9E-09 75.2 15.1 101 66-249 172-274 (462)
259 PRK05976 dihydrolipoamide dehy 97.9 0.00019 4.1E-09 76.6 13.7 102 66-249 180-283 (472)
260 PRK06327 dihydrolipoamide dehy 97.9 0.00024 5.2E-09 75.9 14.3 103 66-249 183-286 (475)
261 PRK09754 phenylpropionate diox 97.8 0.00018 4E-09 74.9 12.5 97 67-248 145-242 (396)
262 PF01593 Amino_oxidase: Flavin 97.8 0.0005 1.1E-08 71.9 15.7 45 201-250 223-268 (450)
263 COG2509 Uncharacterized FAD-de 97.8 8.9E-05 1.9E-09 75.1 9.2 58 186-248 173-231 (486)
264 TIGR03452 mycothione_red mycot 97.8 8.4E-05 1.8E-09 78.8 9.6 32 66-99 2-33 (452)
265 TIGR02053 MerA mercuric reduct 97.8 0.00062 1.3E-08 72.5 16.1 34 66-99 166-199 (463)
266 PRK06115 dihydrolipoamide dehy 97.8 0.00039 8.6E-09 74.0 14.5 103 66-249 174-278 (466)
267 TIGR02733 desat_CrtD C-3',4' d 97.8 2.6E-05 5.6E-10 83.7 5.4 59 187-246 233-293 (492)
268 PRK06370 mercuric reductase; V 97.8 0.00063 1.4E-08 72.4 15.9 102 66-249 171-273 (463)
269 COG1252 Ndh NADH dehydrogenase 97.8 0.00015 3.2E-09 74.2 10.4 108 66-248 3-112 (405)
270 PRK07251 pyridine nucleotide-d 97.8 0.00059 1.3E-08 72.1 15.2 34 66-99 157-190 (438)
271 TIGR00031 UDP-GALP_mutase UDP- 97.8 3.2E-05 7E-10 79.1 5.3 35 67-101 2-36 (377)
272 PLN02507 glutathione reductase 97.7 0.0006 1.3E-08 73.1 15.2 99 66-249 203-302 (499)
273 PRK06116 glutathione reductase 97.7 0.00034 7.4E-09 74.2 13.2 100 66-249 167-267 (450)
274 COG3349 Uncharacterized conser 97.7 3.2E-05 6.9E-10 80.0 5.0 37 67-103 1-37 (485)
275 PLN02268 probable polyamine ox 97.7 3.3E-05 7.3E-10 81.5 5.2 34 68-101 2-35 (435)
276 TIGR03315 Se_ygfK putative sel 97.7 4E-05 8.8E-10 87.0 6.1 36 65-100 536-571 (1012)
277 TIGR01424 gluta_reduc_2 glutat 97.7 0.00083 1.8E-08 71.2 15.7 99 66-249 166-265 (446)
278 COG1206 Gid NAD(FAD)-utilizing 97.7 6.4E-05 1.4E-09 72.7 6.1 122 66-214 3-128 (439)
279 PRK06467 dihydrolipoamide dehy 97.7 0.00056 1.2E-08 72.9 13.9 33 67-99 175-207 (471)
280 TIGR01421 gluta_reduc_1 glutat 97.7 0.00096 2.1E-08 70.7 15.2 101 66-249 166-267 (450)
281 PRK12831 putative oxidoreducta 97.7 5.7E-05 1.2E-09 80.2 5.9 38 63-100 137-174 (464)
282 PLN02852 ferredoxin-NADP+ redu 97.7 6.6E-05 1.4E-09 79.4 6.1 38 64-101 24-63 (491)
283 PRK07846 mycothione reductase; 97.6 0.0007 1.5E-08 71.7 13.7 34 66-99 166-199 (451)
284 PRK07845 flavoprotein disulfid 97.6 0.00071 1.5E-08 72.1 13.6 99 67-250 178-277 (466)
285 PRK06292 dihydrolipoamide dehy 97.6 0.00075 1.6E-08 71.8 13.3 34 66-99 169-202 (460)
286 PRK15317 alkyl hydroperoxide r 97.6 0.00077 1.7E-08 72.8 13.4 97 66-247 351-449 (517)
287 PLN02568 polyamine oxidase 97.6 7.8E-05 1.7E-09 80.3 5.7 38 64-101 3-45 (539)
288 COG1148 HdrA Heterodisulfide r 97.6 7.4E-05 1.6E-09 75.9 4.9 38 65-102 123-160 (622)
289 COG0562 Glf UDP-galactopyranos 97.6 9.1E-05 2E-09 71.7 5.2 37 66-102 1-37 (374)
290 TIGR03140 AhpF alkyl hydropero 97.6 0.0011 2.3E-08 71.6 13.9 97 66-247 352-450 (515)
291 PTZ00188 adrenodoxin reductase 97.6 0.00013 2.8E-09 76.3 6.4 47 56-102 29-76 (506)
292 PRK14989 nitrite reductase sub 97.6 0.00041 8.8E-09 78.7 10.8 35 67-101 4-42 (847)
293 TIGR03452 mycothione_red mycot 97.5 0.0018 4E-08 68.6 15.3 34 66-99 169-202 (452)
294 PRK08010 pyridine nucleotide-d 97.5 0.00099 2.2E-08 70.5 13.3 98 66-249 158-256 (441)
295 COG3075 GlpB Anaerobic glycero 97.5 0.00012 2.6E-09 70.9 5.4 35 66-100 2-36 (421)
296 PRK10262 thioredoxin reductase 97.5 0.0014 3E-08 66.2 13.4 100 66-247 146-248 (321)
297 PRK04965 NADH:flavorubredoxin 97.5 0.00056 1.2E-08 70.8 10.6 34 67-100 3-38 (377)
298 TIGR02374 nitri_red_nirB nitri 97.5 0.00037 7.9E-09 78.9 9.7 33 69-101 1-36 (785)
299 TIGR01316 gltA glutamate synth 97.5 0.00013 2.8E-09 77.2 5.8 37 64-100 131-167 (449)
300 PRK06567 putative bifunctional 97.5 0.00011 2.3E-09 82.4 5.2 36 64-99 381-416 (1028)
301 PRK12810 gltD glutamate syntha 97.5 0.00014 3.1E-09 77.4 5.9 38 64-101 141-178 (471)
302 COG2907 Predicted NAD/FAD-bind 97.5 0.0011 2.3E-08 65.0 11.2 36 65-101 7-42 (447)
303 TIGR03385 CoA_CoA_reduc CoA-di 97.5 0.001 2.3E-08 70.0 12.4 34 66-99 137-170 (427)
304 COG4529 Uncharacterized protei 97.5 0.0005 1.1E-08 70.7 9.4 35 67-101 2-39 (474)
305 KOG4716 Thioredoxin reductase 97.5 0.0011 2.3E-08 64.6 11.0 36 64-99 17-52 (503)
306 PRK12769 putative oxidoreducta 97.5 0.00014 3.1E-09 80.6 5.8 37 64-100 325-361 (654)
307 TIGR02374 nitri_red_nirB nitri 97.5 0.00098 2.1E-08 75.5 12.3 98 67-248 141-239 (785)
308 PRK12775 putative trifunctiona 97.5 0.00015 3.2E-09 83.8 5.8 37 65-101 429-465 (1006)
309 KOG1276 Protoporphyrinogen oxi 97.5 0.00021 4.6E-09 71.7 6.1 38 64-101 9-48 (491)
310 PRK14989 nitrite reductase sub 97.4 0.001 2.2E-08 75.6 12.2 100 67-249 146-247 (847)
311 PLN02328 lysine-specific histo 97.4 0.00018 3.8E-09 80.1 5.9 38 64-101 236-273 (808)
312 TIGR01292 TRX_reduct thioredox 97.4 0.0024 5.2E-08 63.5 13.3 34 66-99 141-174 (300)
313 PLN02676 polyamine oxidase 97.4 0.0002 4.4E-09 76.4 5.7 37 65-101 25-62 (487)
314 PRK13512 coenzyme A disulfide 97.4 0.0014 3E-08 69.3 11.9 33 67-99 149-181 (438)
315 PTZ00052 thioredoxin reductase 97.4 0.002 4.3E-08 69.2 13.1 98 67-250 183-281 (499)
316 PTZ00058 glutathione reductase 97.4 0.0021 4.6E-08 69.6 13.2 34 66-99 237-270 (561)
317 COG2303 BetA Choline dehydroge 97.4 0.00018 4E-09 77.7 5.0 61 190-250 206-269 (542)
318 TIGR01438 TGR thioredoxin and 97.4 0.0021 4.7E-08 68.6 13.1 32 67-98 181-212 (484)
319 PRK14694 putative mercuric red 97.4 0.0021 4.7E-08 68.5 13.1 33 66-98 178-210 (468)
320 COG0446 HcaD Uncharacterized N 97.4 0.0018 3.8E-08 67.6 12.2 102 66-248 136-238 (415)
321 PRK09564 coenzyme A disulfide 97.4 0.0018 3.9E-08 68.5 12.4 34 66-99 149-182 (444)
322 PLN02529 lysine-specific histo 97.4 0.00026 5.5E-09 78.4 5.9 37 64-100 158-194 (738)
323 TIGR01423 trypano_reduc trypan 97.4 0.0025 5.5E-08 68.0 13.3 101 66-250 187-291 (486)
324 PRK14727 putative mercuric red 97.3 0.0021 4.6E-08 68.7 12.7 97 67-250 189-286 (479)
325 PRK05675 sdhA succinate dehydr 97.3 0.0023 5E-08 69.8 12.1 62 187-249 127-191 (570)
326 PRK12814 putative NADPH-depend 97.3 0.00037 7.9E-09 77.2 6.0 38 64-101 191-228 (652)
327 PRK12770 putative glutamate sy 97.3 0.00042 9.1E-09 71.0 5.9 36 65-100 17-52 (352)
328 PRK13748 putative mercuric red 97.2 0.0052 1.1E-07 67.2 14.6 33 66-98 270-302 (561)
329 TIGR01317 GOGAT_sm_gam glutama 97.2 0.00051 1.1E-08 73.4 6.5 36 65-100 142-177 (485)
330 TIGR01318 gltD_gamma_fam gluta 97.2 0.00039 8.4E-09 74.0 5.6 36 65-100 140-175 (467)
331 PF13434 K_oxygenase: L-lysine 97.2 0.00097 2.1E-08 67.7 7.6 142 64-245 188-339 (341)
332 PRK12809 putative oxidoreducta 97.2 0.00054 1.2E-08 75.8 5.9 37 65-101 309-345 (639)
333 COG1252 Ndh NADH dehydrogenase 97.1 0.002 4.2E-08 66.1 9.2 51 188-247 211-262 (405)
334 PLN02546 glutathione reductase 97.1 0.0051 1.1E-07 66.7 12.9 34 66-99 252-285 (558)
335 TIGR01316 gltA glutamate synth 97.1 0.004 8.6E-08 66.0 11.8 34 66-99 272-305 (449)
336 PTZ00318 NADH dehydrogenase-li 97.1 0.0048 1E-07 64.9 12.1 32 68-99 175-220 (424)
337 PRK12770 putative glutamate sy 97.0 0.0049 1.1E-07 63.1 10.6 33 67-99 173-206 (352)
338 PLN02976 amine oxidase 96.9 0.0014 3E-08 75.9 6.4 39 63-101 690-728 (1713)
339 COG0493 GltD NADPH-dependent g 96.9 0.0011 2.3E-08 69.7 5.1 37 65-101 122-158 (457)
340 KOG0685 Flavin-containing amin 96.9 0.0011 2.3E-08 67.9 4.9 36 65-100 20-56 (498)
341 PLN03000 amine oxidase 96.9 0.0014 3E-08 73.2 6.0 38 65-102 183-220 (881)
342 PRK13984 putative oxidoreducta 96.9 0.0015 3.2E-08 72.1 6.1 38 64-101 281-318 (604)
343 PRK12831 putative oxidoreducta 96.9 0.0089 1.9E-07 63.6 11.7 35 65-99 280-314 (464)
344 PTZ00153 lipoamide dehydrogena 96.8 0.015 3.3E-07 64.1 13.5 33 67-99 313-345 (659)
345 PRK12810 gltD glutamate syntha 96.8 0.012 2.7E-07 62.7 12.2 51 196-247 339-400 (471)
346 TIGR03143 AhpF_homolog putativ 96.7 0.019 4.1E-07 62.6 12.6 34 66-99 143-176 (555)
347 KOG1336 Monodehydroascorbate/f 96.6 0.018 3.8E-07 59.2 11.2 101 66-249 213-315 (478)
348 KOG1238 Glucose dehydrogenase/ 96.6 0.0044 9.5E-08 66.1 6.7 40 62-101 53-93 (623)
349 KOG0405 Pyridine nucleotide-di 96.6 0.0069 1.5E-07 59.5 7.3 35 64-98 18-52 (478)
350 KOG4254 Phytoene desaturase [C 96.6 0.0023 5E-08 64.8 4.2 62 187-253 265-327 (561)
351 PF06100 Strep_67kDa_ant: Stre 96.6 0.027 5.7E-07 58.7 12.0 37 67-103 3-43 (500)
352 KOG1335 Dihydrolipoamide dehyd 96.5 0.019 4.1E-07 57.3 9.8 102 65-246 210-313 (506)
353 TIGR03862 flavo_PP4765 unchara 96.4 0.032 6.9E-07 57.2 11.3 55 186-247 86-141 (376)
354 PRK12778 putative bifunctional 96.3 0.031 6.8E-07 63.2 12.1 34 66-99 570-604 (752)
355 KOG3851 Sulfide:quinone oxidor 96.2 0.0027 5.7E-08 61.6 2.3 36 64-99 37-74 (446)
356 KOG1800 Ferredoxin/adrenodoxin 96.2 0.0061 1.3E-07 60.6 4.7 36 66-101 20-57 (468)
357 KOG0399 Glutamate synthase [Am 96.1 0.0063 1.4E-07 67.8 4.8 37 64-100 1783-1819(2142)
358 COG3486 IucD Lysine/ornithine 96.1 0.018 3.9E-07 58.0 7.6 151 63-249 2-159 (436)
359 PRK12779 putative bifunctional 96.1 0.063 1.4E-06 61.9 12.9 34 66-99 447-480 (944)
360 TIGR03169 Nterm_to_SelD pyridi 96.0 0.059 1.3E-06 55.3 11.6 29 67-95 146-180 (364)
361 PRK12769 putative oxidoreducta 96.0 0.044 9.5E-07 61.0 11.2 34 66-99 468-502 (654)
362 KOG2495 NADH-dehydrogenase (ub 96.0 0.021 4.6E-07 57.8 7.4 48 194-247 281-329 (491)
363 PF00996 GDI: GDP dissociation 95.9 0.0078 1.7E-07 62.7 4.1 41 63-103 1-41 (438)
364 COG0569 TrkA K+ transport syst 95.9 0.0069 1.5E-07 57.7 3.4 35 67-101 1-35 (225)
365 TIGR01318 gltD_gamma_fam gluta 95.7 0.079 1.7E-06 56.4 10.9 34 66-99 282-316 (467)
366 KOG1336 Monodehydroascorbate/f 95.6 0.06 1.3E-06 55.4 9.2 38 201-245 141-179 (478)
367 PF01210 NAD_Gly3P_dh_N: NAD-d 95.5 0.015 3.2E-07 52.1 3.9 32 68-99 1-32 (157)
368 PRK12814 putative NADPH-depend 95.5 0.17 3.8E-06 56.2 13.0 35 65-99 322-357 (652)
369 TIGR01816 sdhA_forward succina 95.5 0.062 1.3E-06 58.7 9.3 62 187-249 120-183 (565)
370 COG1251 NirB NAD(P)H-nitrite r 95.4 0.045 9.8E-07 59.2 7.7 32 68-99 147-178 (793)
371 PLN02852 ferredoxin-NADP+ redu 95.3 0.35 7.6E-06 51.5 14.1 61 187-247 267-354 (491)
372 PRK13984 putative oxidoreducta 95.3 0.15 3.3E-06 56.2 12.0 30 66-95 418-453 (604)
373 PF02737 3HCDH_N: 3-hydroxyacy 95.3 0.022 4.8E-07 52.2 4.4 32 68-99 1-32 (180)
374 COG0492 TrxB Thioredoxin reduc 95.1 0.31 6.7E-06 48.6 12.2 94 67-247 144-238 (305)
375 PRK12775 putative trifunctiona 95.0 0.22 4.9E-06 58.0 12.5 35 65-99 570-605 (1006)
376 PF02558 ApbA: Ketopantoate re 94.8 0.041 8.9E-07 48.7 4.7 31 69-99 1-31 (151)
377 PRK01438 murD UDP-N-acetylmura 94.8 0.047 1E-06 58.5 5.9 34 66-99 16-49 (480)
378 COG3634 AhpF Alkyl hydroperoxi 94.6 0.3 6.6E-06 48.3 10.3 84 65-233 353-438 (520)
379 PRK02705 murD UDP-N-acetylmura 94.5 0.04 8.7E-07 58.6 4.5 33 68-100 2-34 (459)
380 TIGR03315 Se_ygfK putative sel 94.5 0.41 9E-06 55.2 12.7 35 65-99 665-701 (1012)
381 TIGR01317 GOGAT_sm_gam glutama 94.3 0.61 1.3E-05 50.0 13.0 35 66-100 283-318 (485)
382 PRK06129 3-hydroxyacyl-CoA deh 94.2 0.051 1.1E-06 54.5 4.2 32 68-99 4-35 (308)
383 PRK12809 putative oxidoreducta 94.0 0.38 8.2E-06 53.5 11.0 35 65-99 450-485 (639)
384 PRK06249 2-dehydropantoate 2-r 93.9 0.082 1.8E-06 53.1 5.1 34 66-99 5-38 (313)
385 PF03721 UDPG_MGDP_dh_N: UDP-g 93.9 0.058 1.3E-06 49.6 3.7 33 67-99 1-33 (185)
386 PRK07819 3-hydroxybutyryl-CoA 93.7 0.081 1.7E-06 52.4 4.6 33 68-100 7-39 (286)
387 PRK07530 3-hydroxybutyryl-CoA 93.7 0.083 1.8E-06 52.5 4.7 33 67-99 5-37 (292)
388 TIGR02354 thiF_fam2 thiamine b 93.7 0.095 2.1E-06 48.9 4.7 35 65-99 20-55 (200)
389 PRK05708 2-dehydropantoate 2-r 93.7 0.092 2E-06 52.6 4.9 33 67-99 3-35 (305)
390 PRK09853 putative selenate red 93.5 0.82 1.8E-05 52.7 12.6 34 66-99 668-703 (1019)
391 PRK07066 3-hydroxybutyryl-CoA 93.5 0.11 2.4E-06 52.1 5.1 33 67-99 8-40 (321)
392 PF01488 Shikimate_DH: Shikima 93.4 0.14 3.1E-06 44.4 5.1 35 65-99 11-46 (135)
393 PRK08293 3-hydroxybutyryl-CoA 93.3 0.093 2E-06 52.0 4.3 33 67-99 4-36 (287)
394 PRK14106 murD UDP-N-acetylmura 93.3 0.11 2.3E-06 55.2 5.0 34 66-99 5-38 (450)
395 PF01262 AlaDh_PNT_C: Alanine 93.2 0.13 2.8E-06 46.5 4.7 35 65-99 19-53 (168)
396 PRK09260 3-hydroxybutyryl-CoA 93.2 0.096 2.1E-06 52.0 4.1 32 68-99 3-34 (288)
397 PF13241 NAD_binding_7: Putati 93.1 0.097 2.1E-06 43.1 3.5 35 65-99 6-40 (103)
398 PRK06719 precorrin-2 dehydroge 93.1 0.14 3.1E-06 45.6 4.8 33 65-97 12-44 (157)
399 PF02254 TrkA_N: TrkA-N domain 93.1 0.12 2.6E-06 43.3 4.1 32 69-100 1-32 (116)
400 PRK12921 2-dehydropantoate 2-r 93.0 0.12 2.6E-06 51.6 4.6 30 68-97 2-31 (305)
401 PRK15116 sulfur acceptor prote 93.0 0.15 3.2E-06 49.7 5.0 35 65-99 29-64 (268)
402 TIGR01470 cysG_Nterm siroheme 93.0 0.17 3.6E-06 47.5 5.1 34 66-99 9-42 (205)
403 PRK06567 putative bifunctional 92.9 0.52 1.1E-05 53.8 9.7 33 66-98 550-585 (1028)
404 KOG4405 GDP dissociation inhib 92.9 0.13 2.8E-06 51.9 4.4 48 63-110 5-52 (547)
405 PRK06522 2-dehydropantoate 2-r 92.9 0.13 2.8E-06 51.4 4.6 32 68-99 2-33 (304)
406 TIGR00518 alaDH alanine dehydr 92.9 0.13 2.8E-06 52.9 4.7 34 66-99 167-200 (370)
407 PF00899 ThiF: ThiF family; I 92.9 0.13 2.9E-06 44.5 4.1 34 66-99 2-36 (135)
408 KOG1346 Programmed cell death 92.8 0.72 1.6E-05 46.8 9.4 135 62-248 174-312 (659)
409 PRK10669 putative cation:proto 92.8 0.27 5.8E-06 53.7 7.3 35 66-100 417-451 (558)
410 KOG2495 NADH-dehydrogenase (ub 92.8 1.5 3.3E-05 44.8 11.8 119 62-249 51-172 (491)
411 PRK06035 3-hydroxyacyl-CoA deh 92.6 0.13 2.8E-06 51.2 4.1 32 68-99 5-36 (291)
412 PF13478 XdhC_C: XdhC Rossmann 92.6 0.13 2.9E-06 44.6 3.7 32 69-100 1-32 (136)
413 COG5044 MRS6 RAB proteins gera 92.5 0.21 4.5E-06 49.8 5.3 39 65-103 5-43 (434)
414 PRK14618 NAD(P)H-dependent gly 92.5 0.18 4E-06 51.0 5.1 33 67-99 5-37 (328)
415 PRK06718 precorrin-2 dehydroge 92.4 0.2 4.3E-06 46.8 4.9 34 65-98 9-42 (202)
416 PRK09424 pntA NAD(P) transhydr 92.2 0.14 3.1E-06 54.4 4.1 35 65-99 164-198 (509)
417 PRK12475 thiamine/molybdopteri 92.2 0.19 4.2E-06 50.9 4.8 35 65-99 23-58 (338)
418 PRK05808 3-hydroxybutyryl-CoA 92.1 0.16 3.5E-06 50.2 4.1 32 68-99 5-36 (282)
419 PF13738 Pyr_redox_3: Pyridine 92.0 0.22 4.7E-06 46.3 4.7 35 65-99 166-200 (203)
420 cd00401 AdoHcyase S-adenosyl-L 92.0 0.19 4.1E-06 52.1 4.5 35 65-99 201-235 (413)
421 TIGR03467 HpnE squalene-associ 92.0 4.3 9.3E-05 42.2 15.0 53 190-247 201-254 (419)
422 TIGR02355 moeB molybdopterin s 91.9 0.24 5.1E-06 47.7 4.9 35 65-99 23-58 (240)
423 cd05292 LDH_2 A subgroup of L- 91.9 0.22 4.7E-06 49.9 4.7 33 68-100 2-36 (308)
424 PRK06130 3-hydroxybutyryl-CoA 91.8 0.22 4.9E-06 49.9 4.9 33 67-99 5-37 (311)
425 PRK07688 thiamine/molybdopteri 91.8 0.24 5.2E-06 50.2 5.0 35 65-99 23-58 (339)
426 PLN02545 3-hydroxybutyryl-CoA 91.7 0.22 4.9E-06 49.5 4.6 33 67-99 5-37 (295)
427 PRK08644 thiamine biosynthesis 91.7 0.28 6E-06 46.2 4.9 35 65-99 27-62 (212)
428 TIGR02356 adenyl_thiF thiazole 91.6 0.28 6E-06 45.9 4.9 35 65-99 20-55 (202)
429 PRK14620 NAD(P)H-dependent gly 91.6 0.23 4.9E-06 50.2 4.6 32 68-99 2-33 (326)
430 PRK08328 hypothetical protein; 91.4 0.28 6.1E-06 46.9 4.8 35 65-99 26-61 (231)
431 cd01487 E1_ThiF_like E1_ThiF_l 91.3 0.31 6.8E-06 44.3 4.8 32 68-99 1-33 (174)
432 PRK04148 hypothetical protein; 91.3 0.22 4.8E-06 42.8 3.5 32 67-99 18-49 (134)
433 PRK14619 NAD(P)H-dependent gly 91.3 0.3 6.5E-06 49.0 5.0 34 66-99 4-37 (308)
434 PRK12549 shikimate 5-dehydroge 91.2 0.28 6.1E-06 48.5 4.7 34 66-99 127-161 (284)
435 cd01080 NAD_bind_m-THF_DH_Cycl 91.2 0.34 7.4E-06 43.7 4.8 36 64-99 42-78 (168)
436 PRK08229 2-dehydropantoate 2-r 91.2 0.26 5.5E-06 50.2 4.6 32 67-98 3-34 (341)
437 PRK05690 molybdopterin biosynt 91.0 0.32 7E-06 46.9 4.8 35 65-99 31-66 (245)
438 cd01483 E1_enzyme_family Super 90.8 0.38 8.2E-06 42.1 4.6 32 68-99 1-33 (143)
439 KOG1439 RAB proteins geranylge 90.7 0.17 3.6E-06 51.1 2.5 41 63-103 1-41 (440)
440 TIGR03736 PRTRC_ThiF PRTRC sys 90.7 0.35 7.5E-06 46.4 4.5 36 64-99 9-55 (244)
441 cd00757 ThiF_MoeB_HesA_family 90.6 0.37 8.1E-06 45.9 4.8 35 65-99 20-55 (228)
442 cd05311 NAD_bind_2_malic_enz N 90.5 0.37 8.1E-06 45.9 4.7 33 67-99 26-61 (226)
443 PRK11064 wecC UDP-N-acetyl-D-m 90.5 0.31 6.7E-06 51.0 4.5 34 67-100 4-37 (415)
444 TIGR01763 MalateDH_bact malate 90.5 0.4 8.6E-06 48.0 5.0 33 67-99 2-35 (305)
445 PTZ00082 L-lactate dehydrogena 90.5 0.45 9.8E-06 47.9 5.5 37 64-100 4-41 (321)
446 KOG0404 Thioredoxin reductase 90.3 2.5 5.5E-05 39.4 9.5 94 66-244 157-252 (322)
447 PRK07531 bifunctional 3-hydrox 90.2 0.37 8E-06 51.7 4.8 32 68-99 6-37 (495)
448 TIGR03026 NDP-sugDHase nucleot 90.0 0.32 6.9E-06 50.9 4.1 33 68-100 2-34 (411)
449 PF00056 Ldh_1_N: lactate/mala 90.0 0.52 1.1E-05 41.2 4.8 33 67-99 1-36 (141)
450 PRK00094 gpsA NAD(P)H-dependen 90.0 0.4 8.7E-06 48.3 4.7 32 68-99 3-34 (325)
451 PRK08223 hypothetical protein; 89.9 0.45 9.7E-06 46.7 4.7 35 65-99 26-61 (287)
452 COG1004 Ugd Predicted UDP-gluc 89.8 0.38 8.3E-06 48.7 4.2 34 67-100 1-34 (414)
453 TIGR00936 ahcY adenosylhomocys 89.8 0.4 8.7E-06 49.6 4.5 36 65-100 194-229 (406)
454 cd00755 YgdL_like Family of ac 89.7 0.5 1.1E-05 45.1 4.8 35 65-99 10-45 (231)
455 PRK08306 dipicolinate synthase 89.7 0.45 9.8E-06 47.3 4.7 35 65-99 151-185 (296)
456 TIGR02279 PaaC-3OHAcCoADH 3-hy 89.6 0.36 7.8E-06 51.7 4.1 34 67-100 6-39 (503)
457 PRK12548 shikimate 5-dehydroge 89.5 0.53 1.1E-05 46.7 5.0 34 66-99 126-160 (289)
458 PRK03562 glutathione-regulated 89.5 0.63 1.4E-05 51.4 6.1 35 66-100 400-434 (621)
459 COG1063 Tdh Threonine dehydrog 89.4 0.39 8.5E-06 49.0 4.1 32 68-99 171-203 (350)
460 PRK03659 glutathione-regulated 89.4 0.76 1.6E-05 50.6 6.6 34 66-99 400-433 (601)
461 PRK07417 arogenate dehydrogena 89.1 0.47 1E-05 46.8 4.3 32 68-99 2-33 (279)
462 cd01485 E1-1_like Ubiquitin ac 89.0 0.6 1.3E-05 43.5 4.7 35 65-99 18-53 (198)
463 cd01492 Aos1_SUMO Ubiquitin ac 89.0 0.58 1.3E-05 43.5 4.6 35 65-99 20-55 (197)
464 TIGR00561 pntA NAD(P) transhyd 89.0 0.49 1.1E-05 50.4 4.5 34 66-99 164-197 (511)
465 PF10727 Rossmann-like: Rossma 89.0 0.25 5.4E-06 42.3 1.9 35 64-98 8-42 (127)
466 COG0446 HcaD Uncharacterized N 88.8 2.4 5.2E-05 43.9 9.7 32 69-100 1-34 (415)
467 COG1179 Dinucleotide-utilizing 88.8 0.52 1.1E-05 44.4 4.0 35 65-99 29-64 (263)
468 TIGR02964 xanthine_xdhC xanthi 88.7 0.72 1.6E-05 44.5 5.1 36 65-100 99-134 (246)
469 PRK11730 fadB multifunctional 88.7 0.42 9E-06 53.7 4.0 34 67-100 314-347 (715)
470 KOG2304 3-hydroxyacyl-CoA dehy 88.7 0.48 1E-05 44.0 3.6 36 64-99 9-44 (298)
471 PRK06223 malate dehydrogenase; 88.6 0.63 1.4E-05 46.6 4.9 33 67-99 3-36 (307)
472 cd05291 HicDH_like L-2-hydroxy 88.6 0.59 1.3E-05 46.8 4.6 33 68-100 2-36 (306)
473 PRK08268 3-hydroxy-acyl-CoA de 88.6 0.47 1E-05 51.0 4.1 34 67-100 8-41 (507)
474 cd01484 E1-2_like Ubiquitin ac 88.5 0.67 1.4E-05 44.3 4.7 32 68-99 1-33 (234)
475 PF00670 AdoHcyase_NAD: S-aden 88.5 0.58 1.3E-05 41.6 4.0 36 64-99 21-56 (162)
476 COG0686 Ald Alanine dehydrogen 88.5 0.47 1E-05 46.4 3.6 36 64-99 166-201 (371)
477 PRK00066 ldh L-lactate dehydro 88.5 0.77 1.7E-05 46.1 5.3 35 65-99 5-41 (315)
478 TIGR02437 FadB fatty oxidation 88.4 0.45 9.8E-06 53.4 4.0 34 67-100 314-347 (714)
479 PRK12550 shikimate 5-dehydroge 88.4 0.58 1.3E-05 45.8 4.4 33 67-99 123-156 (272)
480 PRK09496 trkA potassium transp 88.4 0.52 1.1E-05 50.0 4.3 33 68-100 2-34 (453)
481 PRK05600 thiamine biosynthesis 88.3 0.69 1.5E-05 47.5 5.0 35 65-99 40-75 (370)
482 TIGR02853 spore_dpaA dipicolin 88.3 0.63 1.4E-05 46.1 4.5 35 65-99 150-184 (287)
483 PF03446 NAD_binding_2: NAD bi 88.2 0.7 1.5E-05 41.5 4.5 32 68-99 3-34 (163)
484 TIGR01915 npdG NADPH-dependent 88.2 0.66 1.4E-05 43.9 4.5 32 68-99 2-34 (219)
485 PRK03803 murD UDP-N-acetylmura 88.2 0.67 1.5E-05 49.1 5.0 37 63-99 3-39 (448)
486 PRK11749 dihydropyrimidine deh 88.1 0.6 1.3E-05 49.6 4.6 35 65-99 272-307 (457)
487 PRK02472 murD UDP-N-acetylmura 88.1 0.56 1.2E-05 49.6 4.4 33 67-99 6-38 (447)
488 cd01075 NAD_bind_Leu_Phe_Val_D 88.1 0.92 2E-05 42.3 5.3 34 66-99 28-61 (200)
489 PRK14027 quinate/shikimate deh 88.1 0.72 1.6E-05 45.5 4.8 34 66-99 127-161 (283)
490 cd01339 LDH-like_MDH L-lactate 88.0 0.61 1.3E-05 46.5 4.3 31 69-99 1-32 (300)
491 cd05191 NAD_bind_amino_acid_DH 88.0 1.1 2.5E-05 35.3 5.0 32 66-97 23-55 (86)
492 cd01078 NAD_bind_H4MPT_DH NADP 87.9 0.79 1.7E-05 42.4 4.8 34 66-99 28-62 (194)
493 PRK05597 molybdopterin biosynt 87.9 0.7 1.5E-05 47.3 4.8 35 65-99 27-62 (355)
494 KOG1346 Programmed cell death 87.9 1.6 3.4E-05 44.4 6.9 51 190-246 397-448 (659)
495 PRK05476 S-adenosyl-L-homocyst 87.8 0.72 1.6E-05 48.0 4.8 36 65-100 211-246 (425)
496 COG1893 ApbA Ketopantoate redu 87.8 0.6 1.3E-05 46.6 4.1 32 68-99 2-33 (307)
497 PRK04308 murD UDP-N-acetylmura 87.8 0.78 1.7E-05 48.6 5.2 34 67-100 6-39 (445)
498 COG1748 LYS9 Saccharopine dehy 87.7 0.72 1.6E-05 47.2 4.6 34 67-100 2-36 (389)
499 cd05293 LDH_1 A subgroup of L- 87.6 0.88 1.9E-05 45.6 5.2 34 66-99 3-38 (312)
500 PF00743 FMO-like: Flavin-bind 87.6 2.1 4.6E-05 46.2 8.4 35 65-99 182-216 (531)
No 1
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-93 Score=682.88 Aligned_cols=449 Identities=64% Similarity=1.110 Sum_probs=436.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
+..+||||||||++|+++|++|+|.|.+|+||||+..+++ |++||++||+|+..|.++|+.|
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPd------------------RivGEllQPGG~~~L~~LGl~D 104 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPD------------------RIVGELLQPGGYLALSKLGLED 104 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccch------------------HHHHHhcCcchhHHHHHhCHHH
Confidence 5678999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGVH 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV~ 223 (541)
++++++++++.|+.++.+|+...++||...++....|+.+|+++|.+.||+.+.+.||+++.+|+|.++.++++.++||+
T Consensus 105 cve~IDAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~ 184 (509)
T KOG1298|consen 105 CVEGIDAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVT 184 (509)
T ss_pred HhhcccceEeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcc-cccceEEEEEeecCCCCCCeeEEEEcCCCcEEEEEccCCceEE
Q 040732 224 YKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVD-IPSCFVGMALENCQLPVPNHGHVVLTDPSPILFYPISSSEVRC 302 (541)
Q Consensus 224 v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~-~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~ 302 (541)
+++++|++.+..|.+.|+|||++|++|+.+..+... +.++|+|++.+++++|.++++|++++++.|+++||+++.++||
T Consensus 185 yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRc 264 (509)
T KOG1298|consen 185 YKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRC 264 (509)
T ss_pred EecCCCceEEEecceEEEecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEE
Confidence 999999999999999999999999999999875544 8999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCCCC
Q 040732 303 LVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTG 382 (541)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~~G 382 (541)
+++++ +.+.|+..++|+..|+++.+.|++|+.+++.|.++++++.+++||+..+|+......+++++|||.+|+||++|
T Consensus 265 l~~v~-g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltg 343 (509)
T KOG1298|consen 265 LVDVP-GQKLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTG 343 (509)
T ss_pred EEecC-cccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEcccccccCCccC
Confidence 99999 88899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHhhcC
Q 040732 383 GGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYLGLG 462 (541)
Q Consensus 383 qG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~~~~ 462 (541)
.||+.++.|++.|.++|...+++.|.+.+.+++++|++.||+.+..+|.++.++|++|..+++.+.+++|++||+|+++|
T Consensus 344 gGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~~G 423 (509)
T KOG1298|consen 344 GGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGCFDYLKRG 423 (509)
T ss_pred CceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CCChHhHHHhhccCCCCchhHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHh---hccccccccccce
Q 040732 463 GIYTSGAMALLSGLNPSPSSLIFHFLAMAIFGVGRLLLPFPSPKRLWIGAKLIWVS---IFLSQNSHQMGTF 531 (541)
Q Consensus 463 ~~~~~~~~~ll~g~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 531 (541)
|.|.++|+++|+|++|+|++|+.|||||++|+|++++.|+|+|.++|++.++|.+| ++|.+-+|.....
T Consensus 424 G~c~sGpv~lLsGlnP~Pl~Lv~HffAValy~i~~ll~p~PsP~riw~s~~i~~~A~~vi~P~i~aEgv~qm 495 (509)
T KOG1298|consen 424 GFCVSGPVALLSGLNPRPLSLVLHFFAVALYGIYRLLSPFPSPRRIWESLRILSLASSVIFPIIKAEGVSQM 495 (509)
T ss_pred CccccchHHHhcCCCCCchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 99999999999999999999999999999999999999999999999999999999 8999999987654
No 2
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=1.8e-75 Score=619.51 Aligned_cols=447 Identities=49% Similarity=0.878 Sum_probs=392.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
...+||+|||||++|+++|++|+++|++|+|+||.+..++ +.+|+.++|++.+.|+++|+++
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~------------------~~~g~~L~p~g~~~L~~LGl~d 102 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPE------------------RMMGEFMQPGGRFMLSKLGLED 102 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCc------------------cccccccCchHHHHHHHcCCcc
Confidence 5678999999999999999999999999999999876555 7789999999999999999999
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCCCC--CCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPLGN--FQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKG 221 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~g 221 (541)
++......+..++.++.+|+....+++... .+....++.++|++|.+.|++.+.+.+++++.+++++++.++++.+.+
T Consensus 103 ~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~g 182 (514)
T PLN02985 103 CLEGIDAQKATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKG 182 (514)
T ss_pred hhhhccCcccccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEE
Confidence 998876677888888887776556666322 222345788999999999999999888999999999998887787888
Q ss_pred EEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEeecCCCCCCeeEEEEcCCCcEEEEEccCCceE
Q 040732 222 VHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENCQLPVPNHGHVVLTDPSPILFYPISSSEVR 301 (541)
Q Consensus 222 V~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~ 301 (541)
|++.+++|++.+++||+||+|||++|.+|+.++.+.....+.+.+++..+...+.++++++++++++++++||+++++++
T Consensus 183 V~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~ 262 (514)
T PLN02985 183 VTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVR 262 (514)
T ss_pred EEEEcCCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEEEccccCCCCCcceEEcCCCceEEEEEeCCCeEE
Confidence 99887788877788999999999999999999875554455666676656666777888999999999999999999999
Q ss_pred EEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcC-CeeeccCccccCCCCCCCcEEEecccCCCCCCC
Q 040732 302 CLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKG-SIRTATNRSMPAAPKTTPGALLLGDAFNMRHPL 380 (541)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~ 380 (541)
+++.++ .+..++.+.+++.+++.+...|.+++.+++.+.+..+.. .+..+|+...+...+..+|++|||||||++||+
T Consensus 263 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~ 341 (514)
T PLN02985 263 CVFEVL-PDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPA 341 (514)
T ss_pred EEEEEe-CCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcccccccccCCCCEEEEecccccCCCC
Confidence 999887 445566667788899988888889999999887766554 588899888877778889999999999999999
Q ss_pred CCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHhh
Q 040732 381 TGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYLG 460 (541)
Q Consensus 381 ~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~~ 460 (541)
+|||||+|++||..|+++|....+..+..++.++|++|+++|+++++.++.+|+++|++|...+++.++.||++||+||+
T Consensus 342 ~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~~~~f~y~~ 421 (514)
T PLN02985 342 IASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLC 421 (514)
T ss_pred ccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876666777889999999999999999999999999999986667888999999999999
Q ss_pred cCCCChHhHHHhhccCCCCchhHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHh---hcccccccccc
Q 040732 461 LGGIYTSGAMALLSGLNPSPSSLIFHFLAMAIFGVGRLLLPFPSPKRLWIGAKLIWVS---IFLSQNSHQMG 529 (541)
Q Consensus 461 ~~~~~~~~~~~ll~g~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 529 (541)
+||.|.++|+++|||++|+|+.|+.|||+|++|+||.++.++|+|.++|++.++|++| ++|++|+|...
T Consensus 422 ~g~~~~~~~~~ll~~~~~~p~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~p~~~~e~~~ 493 (514)
T PLN02985 422 SGGFRTSGMMALLGGMNPRPLSLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLFGLALKMLVPHLKAEGVS 493 (514)
T ss_pred cCCccccccHHHHcCCCCCcHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999 89999999544
No 3
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=5.6e-68 Score=564.21 Aligned_cols=432 Identities=40% Similarity=0.690 Sum_probs=362.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC-CCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM-TQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
.++||+||||||+|+++|+.|+++|++|+|+||.+ ..++ +.+|+.++|++.+.|+++|+++
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~------------------r~~G~~L~p~g~~~L~~LGL~d 93 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPD------------------RIVGELLQPGGVNALKELGMEE 93 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccc------------------hhhhhhcCHHHHHHHHHCCChh
Confidence 46899999999999999999999999999999986 2334 6788899999999999999999
Q ss_pred hHhhccceeeeeeEEEEC-CeeeeecCCCCCCCCCccceeecchHHHHHHHHHH--HcCCCeEEEeCeEEEeeeeCC---
Q 040732 144 CVEEIDAHPVVGYALFKD-GKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKA--ASLPNVRMEEGTVTSLFEENG--- 217 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~--~~~~~v~v~~~~v~~l~~~~~--- 217 (541)
++..+.. +..++.+++. |+....+++ ....++.++|++|.+.|++.+ +..+++++.+++|+++.++++
T Consensus 94 ~l~~i~~-~~~~~~v~~~~G~~~~i~~~-----~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~v~~l~~~~~~~~ 167 (567)
T PTZ00367 94 CAEGIGM-PCFGYVVFDHKGKQVKLPYG-----AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGTVNSLLEEGPGFS 167 (567)
T ss_pred hHhhcCc-ceeeeEEEECCCCEEEecCC-----CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeEEEEeccccCccC
Confidence 9887654 4778877764 544444432 223467789999999999988 455799999888999876553
Q ss_pred -eEEEEEEEcCCC---------------------cEEEEEcCEEEEecCCCCcccccccCC--CcccccceEEEEEeecC
Q 040732 218 -IVKGVHYKTKDG---------------------QEHKSYAPLTIVCDGGFSNLRRSLCNP--KVDIPSCFVGMALENCQ 273 (541)
Q Consensus 218 -~v~gV~v~~~~g---------------------~~~~v~a~lvV~AdG~~S~vR~~l~~~--~~~~~~~~~g~~~~~~~ 273 (541)
++.+|++..+++ +..+++||+||+|||.+|++|+.++.. .....+.+.++...+..
T Consensus 168 ~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~ 247 (567)
T PTZ00367 168 ERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVR 247 (567)
T ss_pred CeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEeccc
Confidence 377888876552 123567999999999999999999753 23345677777777778
Q ss_pred CCCCCeeEEEEcCCCcEEEEEccCCceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhc-CCeeec
Q 040732 274 LPVPNHGHVVLTDPSPILFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEK-GSIRTA 352 (541)
Q Consensus 274 ~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~ 352 (541)
+|.++++++++++++++++||+++++.+++++++.+ ..+ +.++..+++.+...|.+++++++.|...+.. +.+..+
T Consensus 248 lp~~~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~-~~p--~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~ 324 (567)
T PTZ00367 248 LPKEQHGTVFLGKTGPILSYRLDDNELRVLVDYNKP-TLP--SLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSM 324 (567)
T ss_pred CCCCCeeEEEEcCCceEEEEEcCCCeEEEEEEecCC-cCC--ChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEe
Confidence 888888899999999999999999999988887632 222 2235677787777888898999888776643 568888
Q ss_pred cCccccCCCCCCCcEEEecccCCCCCCCCCcchhHHHhhHHHHHHhccccC-----CCCChHHHHHHHH----HHHHHhc
Q 040732 353 TNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQ-----DFHDAASLNQYLE----SFYTLRK 423 (541)
Q Consensus 353 ~~~~~~~~~~~~~~vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~-----~~~~~~~~~~~l~----~Y~~~R~ 423 (541)
|+...++.+|..+|++|||||||++||++|||||+||+||..|+++|.... +.++..++.++|+ .|+++|+
T Consensus 325 p~~~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk 404 (567)
T PTZ00367 325 PNARYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRK 404 (567)
T ss_pred eHhhCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhh
Confidence 999888888889999999999999999999999999999999999997643 3444456677777 9999999
Q ss_pred ChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHhhcCCCChHhHHHhhccCCCCchhHHHHHHHHHHHHHHHhccC--
Q 040732 424 PVASTINTLANSAYQVFSASSDEAREVMRQASVDYLGLGGIYTSGAMALLSGLNPSPSSLIFHFLAMAIFGVGRLLLP-- 501 (541)
Q Consensus 424 ~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~ll~g~~~~p~~l~~~~~~~~~~~~~~~~~~-- 501 (541)
+++..++.+++.++++|+. ..+|++||+||++||.|.++|++||||++|+|+.|++|||+|++|+++.++.+
T Consensus 405 ~~a~~i~~ls~aL~~lf~~------~~lr~~~~~y~~~gg~~~~~p~~ll~g~~~~p~~l~~h~~~v~~~~~~~~~~~~~ 478 (567)
T PTZ00367 405 THASTINILSWALYSVFSS------PALRDACLDYFSLGGECVTGPMSLLSGLDPSPGGLLFHYFSVALYGVLNLIMETG 478 (567)
T ss_pred hhHHHHHHHHHHHHHHhCh------HHHHHHHHHHHhcCCccccccHHHHcCCCCCcHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999985 47999999999999999999999999999999999999999999999999998
Q ss_pred ---------------------CCChHHHHHHHHHHHHh---hcccccccccc
Q 040732 502 ---------------------FPSPKRLWIGAKLIWVS---IFLSQNSHQMG 529 (541)
Q Consensus 502 ---------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 529 (541)
++.|.++|++.++|++| ++|++|+|+.+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~p~~~~e~~~ 530 (567)
T PTZ00367 479 AYSIFGKQLSSFEKLTNVASFFVDPERIKHALYLLGAATTIAAPLAKSEFVS 530 (567)
T ss_pred ccccccccccccccccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999 89999999764
No 4
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=100.00 E-value=3e-56 Score=421.19 Aligned_cols=272 Identities=52% Similarity=0.892 Sum_probs=261.9
Q ss_pred cCEEEEecCCCCcccccccCCCcccccceEEEEEeecCCCCCCeeEEEEcCCCcEEEEEccCCceEEEEEecCCCCCCCC
Q 040732 236 APLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENCQLPVPNHGHVVLTDPSPILFYPISSSEVRCLVDVPAGQKLPSI 315 (541)
Q Consensus 236 a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 315 (541)
|+++|+|||.+|++|+.+..+.+...+.|+|+.+.++.+|.++++|+++++++|+++|||+++++|++++++ +.+.|+.
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp-~~k~P~~ 80 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNKPQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVP-GPKLPSV 80 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCCCceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeC-CCccCCc
Confidence 899999999999999999988889999999999999999999999999999999999999999999999999 6668888
Q ss_pred CchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCCCCcchhHHHhhHHHH
Q 040732 316 ANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVL 395 (541)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~~GqG~~~al~Da~~L 395 (541)
+.+++++++++.+.|.+|+++++.|.++++.+++++||+...++.....+|++++|||+|++||+|||||++|+.|+..|
T Consensus 81 ~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL 160 (276)
T PF08491_consen 81 SNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWKPGVVLLGDAANMRHPLTGGGMTVALNDVVLL 160 (276)
T ss_pred cchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCCCCEEEEehhhcCcCCccccchhhHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHhhcCCCChHhHHHhhcc
Q 040732 396 RNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYLGLGGIYTSGAMALLSG 475 (541)
Q Consensus 396 a~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~ll~g 475 (541)
+++|.+..++.|.+.+.++++.|+++|++....+|.+++++|.+|.+++ +..+.||++||+|+++||.|.++|+++|||
T Consensus 161 ~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~-~~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsg 239 (276)
T PF08491_consen 161 RDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADD-DYLKALRQGCFKYFQLGGECVSGPVALLSG 239 (276)
T ss_pred HHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCCCCcchHHHhcc
Confidence 9999999899999999999999999999999999999999999999885 456799999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhccCCC---ChHHHH
Q 040732 476 LNPSPSSLIFHFLAMAIFGVGRLLLPFP---SPKRLW 509 (541)
Q Consensus 476 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~ 509 (541)
++|+|+.|++|||+|++|++|.++.++| +|.++|
T Consensus 240 l~p~P~~L~~Hff~Va~~~i~~~~~~~p~~~~P~~~~ 276 (276)
T PF08491_consen 240 LNPRPLVLFYHFFAVAFYAIYLNLKPRPWYGFPLALW 276 (276)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHcccCCcccCChhhC
Confidence 9999999999999999999999999999 888876
No 5
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=4.2e-45 Score=378.15 Aligned_cols=365 Identities=23% Similarity=0.289 Sum_probs=280.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC-CCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM-TQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
.+||+||||||+|+++|+.|+++|++|+||||.+ .... .+.+..+++++++.|+++|+.+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~------------------~~r~~~l~~~~~~~L~~lG~~~~ 63 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLE------------------RGRGIALSPNALRALERLGLWDR 63 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCcccccc------------------CceeeeecHhHHHHHHHcCChhh
Confidence 5799999999999999999999999999999982 2222 45677899999999999999777
Q ss_pred HhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEE
Q 040732 145 VEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVH 223 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~ 223 (541)
+......+...+.+..++. ....++.........++.++|..+.+.|.+.+.+.|+++++.++ |+.+..+++.+. ++
T Consensus 64 i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~ 141 (387)
T COG0654 64 LEALGVPPLHVMVVDDGGR-RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VT 141 (387)
T ss_pred hhhccCCceeeEEEecCCc-eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EE
Confidence 7776565666666665554 33344433444466789999999999999999999899999987 999888877554 55
Q ss_pred EEcCCCcEEEEEcCEEEEecCCCCcccccccC-CCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCCceE
Q 040732 224 YKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCN-PKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSSEVR 301 (541)
Q Consensus 224 v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~-~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~ 301 (541)
+.. +|+ +++||+||+|||.+|.+|+.++. ......+.+.+++.. ....|++.....++.+.+++.++|.+++...
T Consensus 142 l~~-dG~--~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 218 (387)
T COG0654 142 LSF-DGE--TLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSS 218 (387)
T ss_pred EcC-CCc--EEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCceEEEecCCCcee
Confidence 544 888 46699999999999999999994 333335566666554 3334777788889999999999999987777
Q ss_pred EEEEecCCC--CCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCC
Q 040732 302 CLVDVPAGQ--KLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHP 379 (541)
Q Consensus 302 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P 379 (541)
+++..+... ....++.+...+.+.+.+....+ +...........+|+....+.+|..+|++|+|||||.+||
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P 292 (387)
T COG0654 219 VVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDP------LGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHP 292 (387)
T ss_pred EEEECChhhHHHHhcCCHHHHHHHHHHhcCcccc------cceEEEccccccccccchhhhheecCcEEEEeeccccCCC
Confidence 777766221 12233333333333333221111 1112233456678888888999999999999999999999
Q ss_pred CCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHh
Q 040732 380 LTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYL 459 (541)
Q Consensus 380 ~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~ 459 (541)
++|||+|+|++||.+|+++|.+....+.+ ..+|+.|+++|++++..++..++.+.+.|... .+....+|+..+.++
T Consensus 293 ~~gQG~nlgl~Da~~La~~L~~~~~~~~~---~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~l~~~ 368 (387)
T COG0654 293 LAGQGANLALEDAAALAEALAAAPRPGAD---AAALAAYEARRRPRAEAIQKLSRALGRLFSAD-GPFARFLRNLGLRLL 368 (387)
T ss_pred ccccchhhhhhhHHHHHHHHHHHhhcCcc---HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccC-CcHHHHHHHHHHHhh
Confidence 99999999999999999999986432111 78999999999999999999999999999876 577899999999988
Q ss_pred hcCC
Q 040732 460 GLGG 463 (541)
Q Consensus 460 ~~~~ 463 (541)
....
T Consensus 369 ~~~~ 372 (387)
T COG0654 369 DRLP 372 (387)
T ss_pred ccCc
Confidence 6554
No 6
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-44 Score=376.39 Aligned_cols=386 Identities=17% Similarity=0.185 Sum_probs=266.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
.++||+||||||+|+++|+.|+++|++|+|+||.+.+... .+... ...+..+++++.+.|+++|+++.
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~-~g~~~-----------~~r~~~l~~~s~~~L~~lGl~~~ 69 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLA-ADAPP-----------ALRVSAINAASEKLLTRLGVWQD 69 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccc-cCCCC-----------CceeeecchhHHHHHHHcCCchh
Confidence 3589999999999999999999999999999998753321 01000 12334689999999999999998
Q ss_pred HhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEE
Q 040732 145 VEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVH 223 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~ 223 (541)
+......+..++.++.........+.....+....++.++|..|.+.|.+.+.+.++++++.++ |+++.++++ +|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~---~v~ 146 (400)
T PRK08013 70 ILARRASCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGEN---EAF 146 (400)
T ss_pred hhhhcCccccEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC---eEE
Confidence 8764455666777665432222333322222233467899999999999999988889999987 888877665 345
Q ss_pred EEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCCc-eE
Q 040732 224 YKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSSE-VR 301 (541)
Q Consensus 224 v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~~-~~ 301 (541)
+...+|++ ++||+||+|||.+|.+|+.++.+.....+...+++.. ....+++.....++..++++.++|..++. .+
T Consensus 147 v~~~~g~~--i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~ 224 (400)
T PRK08013 147 LTLKDGSM--LTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILAFLPLSDPHLCS 224 (400)
T ss_pred EEEcCCCE--EEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEEEEECCCCCeEE
Confidence 55667764 5699999999999999999988765555555544432 22333344445566777899999998765 45
Q ss_pred EEEEecCCCCC---CCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCC
Q 040732 302 CLVDVPAGQKL---PSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRH 378 (541)
Q Consensus 302 ~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~ 378 (541)
+++..+ .+.. .....+++.+.+...+ ++.+ ...........+|.....+++|..+|++|+|||||.++
T Consensus 225 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~----~~~l----~~~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~ 295 (400)
T PRK08013 225 IVWSLS-PEEAQRMQQAPEEEFNRALAIAF----DNRL----GLCELESERQVFPLTGRYARQFAAHRLALVGDAAHTIH 295 (400)
T ss_pred EEEEcC-HHHHHHHHcCCHHHHHHHHHHHH----hHhh----CceEecCCccEEecceeecccccCCcEEEEechhhcCC
Confidence 666554 1110 0111122222222111 1000 00000112234566666788999999999999999999
Q ss_pred CCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 040732 379 PLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDY 458 (541)
Q Consensus 379 P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~ 458 (541)
|+.|||||+||+||.+|+++|......+.......+|++|+++|++++..++..++.+.++|..+ ++....+|+..+..
T Consensus 296 P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~-~~~~~~~R~~~l~~ 374 (400)
T PRK08013 296 PLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGN-NPAKKLLRDIGLKL 374 (400)
T ss_pred ccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHH
Confidence 99999999999999999999975321111111134799999999999999999999999999765 57788999999988
Q ss_pred hhcCCCChHhHHHhhccCC
Q 040732 459 LGLGGIYTSGAMALLSGLN 477 (541)
Q Consensus 459 ~~~~~~~~~~~~~ll~g~~ 477 (541)
+...+......+..++|++
T Consensus 375 ~~~~~~~~~~~~~~~~g~~ 393 (400)
T PRK08013 375 ADTLPGVKPQLIRQAMGLN 393 (400)
T ss_pred HhhCHHHHHHHHHHHccCc
Confidence 7665555555555556643
No 7
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=2.8e-44 Score=374.84 Aligned_cols=386 Identities=20% Similarity=0.224 Sum_probs=274.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCC-CcCCcceeeeeccccccccccccccCchhhHHHHHCCch
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPD-RIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLD 142 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~ 142 (541)
+..+||+||||||+|+++|+.|+++|++|+|+|+....+. .... ...+..+++++++.|+++|++
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~--------------~~r~~~l~~~~~~~L~~lGl~ 67 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELP--------------DVRVSALSRSSEHILRNLGAW 67 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCC--------------CcceecccHHHHHHHHhCCch
Confidence 4568999999999999999999999999999999631111 0000 233457899999999999999
Q ss_pred hhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEE
Q 040732 143 DCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKG 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~g 221 (541)
+.+.+....+..++.++.........++.........++.+++..+.+.|.+.+.+.++++++.+. |+++..+++ +
T Consensus 68 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~---~ 144 (405)
T PRK08850 68 QGIEARRAAPYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGES---E 144 (405)
T ss_pred hhhhhhhCCcccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC---e
Confidence 998765555667777776543223333333223334577889999999999999887789999887 888877665 3
Q ss_pred EEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCCc-
Q 040732 222 VHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSSE- 299 (541)
Q Consensus 222 V~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~~- 299 (541)
+.+..++|++ ++||+||+|||.+|.+|+.++.+.....+.+.++... ....++....+.++++++++.++|+.++.
T Consensus 145 ~~v~~~~g~~--~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lp~~~~~~ 222 (405)
T PRK08850 145 AWLTLDNGQA--LTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPLAFLPMSEPNM 222 (405)
T ss_pred EEEEECCCCE--EEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCceEEEECCCCCe
Confidence 4555677875 5599999999999999999988665554444444433 22334445566788888999999998754
Q ss_pred eEEEEEecCCCC--CCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCC
Q 040732 300 VRCLVDVPAGQK--LPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMR 377 (541)
Q Consensus 300 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~ 377 (541)
.++.+..+.... ....+.++..+.+.+.+.+. +...........+|.....+.+|..+|++|+|||||.+
T Consensus 223 ~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~ 294 (405)
T PRK08850 223 SSIVWSTEPLRAEALLAMSDEQFNKALTAEFDNR--------LGLCEVVGERQAFPLKMRYARDFVRERVALVGDAAHTI 294 (405)
T ss_pred EEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhh--------hCcEEEcccccEEecceeeccccccCcEEEEEhhhhcC
Confidence 455565541110 01122223333333221110 00000111234566666667899999999999999999
Q ss_pred CCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 040732 378 HPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVD 457 (541)
Q Consensus 378 ~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~ 457 (541)
||+.|||+|+||+||.+|+++|......+.......+|+.|+++|++++..++..++.+.++|+.+ ++....+|+..+.
T Consensus 295 ~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~-~~~~~~~R~~~l~ 373 (405)
T PRK08850 295 HPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGS-NPAKKLVRGIGMS 373 (405)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 999999999999999999999976432122223467999999999999999999999999999866 5667899999998
Q ss_pred HhhcCCCChHhHHHhhccCC
Q 040732 458 YLGLGGIYTSGAMALLSGLN 477 (541)
Q Consensus 458 ~~~~~~~~~~~~~~ll~g~~ 477 (541)
.+..-+....-.+..+.|+.
T Consensus 374 ~~~~~~~~k~~~~~~~~g~~ 393 (405)
T PRK08850 374 LAGQLPGAKDEIMKRALGLK 393 (405)
T ss_pred HHhhCHHHHHHHHHHHhCCC
Confidence 88776665555556566643
No 8
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=4.8e-43 Score=361.48 Aligned_cols=363 Identities=15% Similarity=0.217 Sum_probs=258.2
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
+||+||||||+|+++|+.|++.|++|+|+|+.+....... ....+..+++++.+.|+++|+++.+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~--------------~~~r~~~l~~~~~~~L~~lGl~~~l~ 67 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFF--------------KDIRTTALTPHSKNFLFSIDIWEELE 67 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccC--------------cCceEEEeCHHHHHHHHHCCcHHHHH
Confidence 6999999999999999999999999999999753211000 02456789999999999999998886
Q ss_pred hccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE
Q 040732 147 EIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYK 225 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~ 225 (541)
.. ..+...+.++.........++.. .....++.++|.+|.+.|++.+.+.++++++.++ ++++.++++. |++.
T Consensus 68 ~~-~~~~~~~~~~~~~g~~~~~~~~~--~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~v~ 141 (374)
T PRK06617 68 KF-VAEMQDIYVVDNKASEILDLRND--ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY---SIIK 141 (374)
T ss_pred hh-cCCCcEEEEEECCCceEEEecCC--CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe---EEEE
Confidence 54 34556666665432222333321 2234578999999999999999998889998886 9998877664 4444
Q ss_pred cCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCCc-eEEE
Q 040732 226 TKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSSE-VRCL 303 (541)
Q Consensus 226 ~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~~-~~~~ 303 (541)
..++ +++||+||+|||.+|.+|+.++.+.....+ ..++... ....++.+....++.+.++++++|.+++. ..++
T Consensus 142 ~~~~---~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lPl~~~~~~~~v 217 (374)
T PRK06617 142 FDDK---QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLPLGPFALLPLKDQYASSVI 217 (374)
T ss_pred EcCC---EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEecCCCCEEEeECCCCCeEEEE
Confidence 5554 366999999999999999998775533333 3333332 22334444455577777899999999886 3455
Q ss_pred EEecCCCCC---CCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCC
Q 040732 304 VDVPAGQKL---PSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPL 380 (541)
Q Consensus 304 ~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~ 380 (541)
+..+ .+.. ...+.+++.+.+..... +.+ ...........+|.....+.+|..+|++|+|||||.+||+
T Consensus 218 w~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~i~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~ 288 (374)
T PRK06617 218 WSTS-SDQAALIVNLPVEEVRFLTQRNAG----NSL----GKITIDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPL 288 (374)
T ss_pred EeCC-HHHHHHHHcCCHHHHHHHHHHhhc----hhc----CceeeccceeEEEeeeeeccceecCCEEEEEcccccCCCC
Confidence 5543 1110 11112222222222111 111 1111122456778877788899999999999999999999
Q ss_pred CCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHhh
Q 040732 381 TGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYLG 460 (541)
Q Consensus 381 ~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~~ 460 (541)
.|||+|+||+||.+|+++|.. ..+|+.|+++|++++..++.+++.+.++|+.+. +....+|+..+..+.
T Consensus 289 ~GQG~n~gl~Da~~La~~L~~----------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~-~~~~~~R~~~l~~~~ 357 (374)
T PRK06617 289 AGQGLNQGIKDIEILSMIVSN----------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNYS-KNLRCLRQIGFKVIN 357 (374)
T ss_pred ccccHHHHHHHHHHHHHHHcC----------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHh
Confidence 999999999999999999842 148999999999999999999999999998664 567889999988877
Q ss_pred cCCCChHhHHHhh
Q 040732 461 LGGIYTSGAMALL 473 (541)
Q Consensus 461 ~~~~~~~~~~~ll 473 (541)
.-+....-.+..+
T Consensus 358 ~~~~~k~~~~~~~ 370 (374)
T PRK06617 358 NFKPIKNLITSYA 370 (374)
T ss_pred cCHHHHHHHHHHh
Confidence 6655554444433
No 9
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=2.4e-43 Score=368.15 Aligned_cols=386 Identities=18% Similarity=0.217 Sum_probs=265.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.+||+||||||+|+++|+.|+++|++|+|+|+.+.... ....... ....+..+++++.+.|+++|+++.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~-~~~~~~~---------~~~r~~~l~~~~~~~L~~lGl~~~l 71 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVK-PFDPQAP---------FEPRVSALSAASQRILERLGAWDGI 71 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCcccc-ccccCCC---------CCccchhhhHHHHHHHHHCChhhhh
Confidence 47999999999999999999999999999999862110 0000000 0223457999999999999999888
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
......+...+.++.........+..........++.++|..+.+.|.+.+.+. ++++++++ ++++.++++. |++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---v~v 147 (405)
T PRK05714 72 AARRASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDS-DIGLLANARLEQMRRSGDD---WLL 147 (405)
T ss_pred hHhhCccceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcC-CCEEEcCCEEEEEEEcCCe---EEE
Confidence 654344556666655433233344322222234567899999999999988876 89999886 8888776653 455
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCCc----
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSSE---- 299 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~~---- 299 (541)
.+++|++ ++||+||+|||.+|.+|+.++.+.....+.+.+.+.. ....++....+..+.+.++++++|++++.
T Consensus 148 ~~~~g~~--~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~ 225 (405)
T PRK05714 148 TLADGRQ--LRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLPLERDGDEHW 225 (405)
T ss_pred EECCCCE--EEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEEeeCCCCCCCCe
Confidence 5677765 5599999999999999999987655444444444332 22223333445556888899999997532
Q ss_pred eEEEEEecCCCC--CCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCC
Q 040732 300 VRCLVDVPAGQK--LPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMR 377 (541)
Q Consensus 300 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~ 377 (541)
..+.+..+.... ....+.++..+.+.+.+. . .+.+.+.......+|.....+.+|..+|++|+|||||.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~ 297 (405)
T PRK05714 226 CSIVWSTTPEEAERLMALDDDAFCAALERAFE----G----RLGEVLSADPRLCVPLRQRHAKRYVEPGLALIGDAAHTI 297 (405)
T ss_pred EEEEEECCHHHHHHHHCCCHHHHHHHHHHHHH----H----HhCCceecCCccEEecceeehhhhccCCEEEEEeccccC
Confidence 122333331110 001122222232322111 1 111112223445677777778899999999999999999
Q ss_pred CCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 040732 378 HPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVD 457 (541)
Q Consensus 378 ~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~ 457 (541)
+|+.|||+|+||+||..|+++|......++......+|+.|+++|++++..++..++.+.++|+.+ ++....+|+..+.
T Consensus 298 ~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~ 376 (405)
T PRK05714 298 HPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQAD-PLPLRWLRNTGLK 376 (405)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 999999999999999999999975321111112247999999999999999999999999999876 4557899999998
Q ss_pred HhhcCCCChHhHHHhhccC
Q 040732 458 YLGLGGIYTSGAMALLSGL 476 (541)
Q Consensus 458 ~~~~~~~~~~~~~~ll~g~ 476 (541)
.+..-+....-.+..++|+
T Consensus 377 ~~~~~~~~k~~~~~~~~g~ 395 (405)
T PRK05714 377 LVDQMPEAKALFVRQALGL 395 (405)
T ss_pred HHhhCHHHHHHHHHHHhcC
Confidence 8887776666666666664
No 10
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=3.1e-43 Score=369.80 Aligned_cols=383 Identities=16% Similarity=0.175 Sum_probs=268.3
Q ss_pred CcEEEECCChHHHHHHHHHhh----CCCcEEEEecCCCCCCCcC--CcceeeeeccccccccccccccCchhhHHHHHCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGT----DGRRVHVIERDMTQPDRID--GRRVHVIERDLMEPNRIVGELLQPGGYLKLVELG 140 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~----~G~~V~viEr~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lg 140 (541)
|||+||||||+|+++|+.|++ +|++|+|||+.+.+..... ...... ....+..+++++++.|+.+|
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~--------~~~R~~~l~~~s~~~L~~lG 72 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGP--------YSNRVSSITPASISFFKKIG 72 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCC--------CCCCeEEcCHHHHHHHHHcC
Confidence 699999999999999999999 8999999999653221000 000000 02345679999999999999
Q ss_pred chhhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCC--CeEEEeCe-EEEeeee--
Q 040732 141 LDDCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLP--NVRMEEGT-VTSLFEE-- 215 (541)
Q Consensus 141 l~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~--~v~v~~~~-v~~l~~~-- 215 (541)
+++.+......+...+.++.........++... .....++.++|..+.+.|.+.+.+.+ ++++++++ |+++..+
T Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~ 151 (437)
T TIGR01989 73 AWDHIQSDRIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSK 151 (437)
T ss_pred chhhhhhhcCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccc
Confidence 999987655556666766654322233333222 22345788999999999999998886 69999987 8888642
Q ss_pred --CCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecC-CCCCCeeEEEEcCCCcEE
Q 040732 216 --NGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQ-LPVPNHGHVVLTDPSPIL 291 (541)
Q Consensus 216 --~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~-~p~~~~~~~~~~~~~~~~ 291 (541)
++...+|+++..+|++ ++||+||+|||.+|.+|+.++++.....+...+++.. ... .++++..+.++.+++++.
T Consensus 152 ~~~~~~~~v~v~~~~g~~--i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g~~~ 229 (437)
T TIGR01989 152 YPNDNSNWVHITLSDGQV--LYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTGPIA 229 (437)
T ss_pred cccCCCCceEEEEcCCCE--EEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCCCEE
Confidence 1111246666778875 5699999999999999999998776666555555443 222 234455566778889999
Q ss_pred EEEccCCceEEEEEecCCC--CCCCCCchhHHHHHHHhcC---CCCCh---------h-----------------hHHHH
Q 040732 292 FYPISSSEVRCLVDVPAGQ--KLPSIANGEMAKYLKTKVA---PQIPD---------E-----------------LRDAF 340 (541)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~---~~~~~---------~-----------------l~~~~ 340 (541)
++|++++..++++..+... .....+.+++.+.+.+.+. ...|. . +.+.+
T Consensus 230 ~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 309 (437)
T TIGR01989 230 LLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRV 309 (437)
T ss_pred EeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchh
Confidence 9999999888887765211 1112334455554433330 00000 0 00000
Q ss_pred HhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHH
Q 040732 341 ISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYT 420 (541)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~ 420 (541)
. .+.......+|.....+.+|..+|++|+|||||.+||+.|||+|+||+||.+|+++|......+..-.-..+|++|++
T Consensus 310 ~-~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~ 388 (437)
T TIGR01989 310 I-GVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYER 388 (437)
T ss_pred h-eeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 0 111122356777777788999999999999999999999999999999999999999875321111112468999999
Q ss_pred HhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHhhcC
Q 040732 421 LRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYLGLG 462 (541)
Q Consensus 421 ~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~~~~ 462 (541)
+|++++..++.+++.+.++|..+ .+....+|+..+..+..-
T Consensus 389 ~R~~~~~~v~~~t~~l~~l~~~~-~~~~~~~R~~~l~~~~~~ 429 (437)
T TIGR01989 389 ERYAKNVVLLGLVDKLHKLYATD-FPPVVALRTFGLNLTNYI 429 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHHhhhC
Confidence 99999999999999999999876 466789999988776543
No 11
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.4e-42 Score=363.78 Aligned_cols=388 Identities=17% Similarity=0.171 Sum_probs=262.8
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCc
Q 040732 62 ESVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGL 141 (541)
Q Consensus 62 ~~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl 141 (541)
.++.++||+||||||+|+++|+.|+++|++|+|+||.+...... ++.+..+++++++.|+++|+
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~----------------~g~~~~l~~~~~~~L~~lGl 77 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAA----------------KGQAYALSLLSARIFEGIGV 77 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCC----------------CCcEEEechHHHHHHHHCCh
Confidence 34567999999999999999999999999999999997543310 34456789999999999999
Q ss_pred hhhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEE
Q 040732 142 DDCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVK 220 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~ 220 (541)
++.+... ..+..++.++.........+..........++...+..+.+.|++.+.+.+++++++++ ++++..+++.+
T Consensus 78 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~- 155 (415)
T PRK07364 78 WEKILPQ-IGKFRQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAA- 155 (415)
T ss_pred hhhhHhh-cCCccEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCee-
Confidence 9887753 23444455544322222233322222223345555567999999999888899999886 99987766643
Q ss_pred EEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCCc
Q 040732 221 GVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSSE 299 (541)
Q Consensus 221 gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~~ 299 (541)
.|++.+ +++..+++||+||+|||.+|.+|+.++.+..........+.+. ....+........+.+.++++++|.+++.
T Consensus 156 ~v~~~~-~~~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~ 234 (415)
T PRK07364 156 TVTLEI-EGKQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWPSGPFAILPLPGNR 234 (415)
T ss_pred EEEEcc-CCcceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCC
Confidence 244432 2333457899999999999999999977543333222222221 22222233333334466789999999988
Q ss_pred eEEEEEecCCC--CCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCC
Q 040732 300 VRCLVDVPAGQ--KLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMR 377 (541)
Q Consensus 300 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~ 377 (541)
.++++..+... .....+.++..+.+.+.+.+... .+ ........+|.......+|..+|++|+|||||.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~ 306 (415)
T PRK07364 235 CQIVWTAPHAQAKALLALPEAEFLAELQQRYGDQLG-KL-------ELLGDRFLFPVQLMQSDRYVQHRLALVGDAAHCC 306 (415)
T ss_pred EEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhhc-Cc-------eecCCCceecchhhhhhhhcCCcEEEEecccccC
Confidence 87766554111 11122334444444443222111 11 0112333566666667789999999999999999
Q ss_pred CCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 040732 378 HPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVD 457 (541)
Q Consensus 378 ~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~ 457 (541)
+|+.|||+|+||+||..|+++|......++.-...++|+.|+++|++++..++.+++.+.++|..+ .+....+|+..+.
T Consensus 307 ~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~~~ 385 (415)
T PRK07364 307 HPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQ-WWPLVVVRRLGLW 385 (415)
T ss_pred CCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHH
Confidence 999999999999999999999976421111111137999999999999999999999999999865 4567889999988
Q ss_pred HhhcCCCChHhHHHhhccCC
Q 040732 458 YLGLGGIYTSGAMALLSGLN 477 (541)
Q Consensus 458 ~~~~~~~~~~~~~~ll~g~~ 477 (541)
.+..-.....-.+..++|++
T Consensus 386 ~~~~~~~~~~~~~~~~~g~~ 405 (415)
T PRK07364 386 LLRHVPPLKRLALRLMTGLK 405 (415)
T ss_pred HHhhCHHHHHHHHHHHcCCC
Confidence 88766555555566666654
No 12
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=1.8e-42 Score=358.55 Aligned_cols=377 Identities=18% Similarity=0.191 Sum_probs=262.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.+||+||||||+|+++|+.|++.|++|+|+|+.+.......+ .. ......++|++++.|+++|+++.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~-~~-----------~~r~~~l~~~~~~~L~~lG~~~~~ 70 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQ-PM-----------DIRVSAISQTSVDLLESLGAWSSI 70 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCC-CC-----------CccEEEecHHHHHHHHHCCCchhh
Confidence 489999999999999999999999999999987522110000 00 112247899999999999999888
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
......+...+..+..+.. ...++.........++.+.+..+...|.+.+.+.++++++.++ |+++..+++ ++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~---~~~v 146 (384)
T PRK08849 71 VAMRVCPYKRLETWEHPEC-RTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAE---GNRV 146 (384)
T ss_pred hHhhCCccceEEEEeCCCc-eEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCC---eEEE
Confidence 6533344445555443221 2223322222233467788888999999998888899999887 999987766 3456
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCCceEEE
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSSEVRCL 303 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 303 (541)
++++|++ ++||+||+|||.+|.+|+.++.......+...++++. ....++.+..+.++.+.++..++|+.++..+++
T Consensus 147 ~~~~g~~--~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~~~~~~ 224 (384)
T PRK08849 147 TLESGAE--IEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRSFLPLCGNQGSLV 224 (384)
T ss_pred EECCCCE--EEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEEEeEcCCCceEEE
Confidence 6677865 5599999999999999999987554444444444432 333444455566666677888899987765555
Q ss_pred EEecCCC--CCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCCC
Q 040732 304 VDVPAGQ--KLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLT 381 (541)
Q Consensus 304 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~~ 381 (541)
+..+... .....+.++..+.+.+.+.+.+. .+.......+|.....+.+|..+|++|+|||||.++|+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~ 295 (384)
T PRK08849 225 WYDSPKRIKQLSAMNPEQLRSEILRHFPAELG---------EIKVLQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLA 295 (384)
T ss_pred EECCHHHHHHHHcCCHHHHHHHHHHHhhhhhC---------cEEeccceEeeccccccchhccCCEEEEEcccccCCCCc
Confidence 5432110 01122334444444433221111 011223456677767788999999999999999999999
Q ss_pred CcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHhhc
Q 040732 382 GGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYLGL 461 (541)
Q Consensus 382 GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~~~ 461 (541)
|||+|+||+||.+|+++|.... ...+++|+.|+++|+++...++..++.+.++|+.. .+....+|+..+..+..
T Consensus 296 GQG~n~al~Da~~L~~~l~~~~-----~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~ 369 (384)
T PRK08849 296 GQGVNLGFKDVDVLLAETEKQG-----VLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNS-LTPLKFVRNAALKLAEN 369 (384)
T ss_pred cchHhHHHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHhc
Confidence 9999999999999999986421 12467999999999999999999999999999876 34568899999888877
Q ss_pred CCCChHhHHHhhcc
Q 040732 462 GGIYTSGAMALLSG 475 (541)
Q Consensus 462 ~~~~~~~~~~ll~g 475 (541)
.+....-.+..+.|
T Consensus 370 ~~~~k~~~~~~~~g 383 (384)
T PRK08849 370 SGPLKTQVLKYALG 383 (384)
T ss_pred cHHHHHHHHHHHcC
Confidence 66555555544443
No 13
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=1.5e-42 Score=360.52 Aligned_cols=384 Identities=18% Similarity=0.230 Sum_probs=267.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
...+||+||||||+|+++|+.|+++|++|+|+||.+.+.....+. ......+++++.+.|+++|+++
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~-------------~~r~~~l~~~~~~~l~~lGl~~ 70 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQP-------------DLRVYAFAADNAALLDRLGVWP 70 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCC-------------CCEEEEecHHHHHHHHHCCchh
Confidence 567899999999999999999999999999999986432211010 1122458899999999999999
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGV 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV 222 (541)
.+......+...+.++..+......++.........++.++|..+.+.|.+.+++. +++++.++ |+++..+++. +
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~-gv~i~~~~~v~~i~~~~~~---v 146 (392)
T PRK08773 71 AVRAARAQPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAA-GVQLHCPARVVALEQDADR---V 146 (392)
T ss_pred hhhHhhCCcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhC-CCEEEcCCeEEEEEecCCe---E
Confidence 88764444555666665432222333332223334578899999999999999886 89999886 8888876663 4
Q ss_pred EEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCCceE
Q 040732 223 HYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSSEVR 301 (541)
Q Consensus 223 ~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~ 301 (541)
+++.++|++ ++||+||+|||.+|.+|+.++.+.....+...+.+.. ....|++...+..+.+++++.++|.+++..+
T Consensus 147 ~v~~~~g~~--~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lP~~~~~~~ 224 (392)
T PRK08773 147 RLRLDDGRR--LEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPLALLPFADGRSS 224 (392)
T ss_pred EEEECCCCE--EEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCCcEEEEECCCCceE
Confidence 455667764 5699999999999999999887654444444555443 3334555555556778889999999998887
Q ss_pred EEEEecCCCC--CCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCC
Q 040732 302 CLVDVPAGQK--LPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHP 379 (541)
Q Consensus 302 ~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P 379 (541)
+++.++.... ....+.++..+.+.+.+.+.+. ..........+|.....+.+|..+|++|+|||||.++|
T Consensus 225 ~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P 296 (392)
T PRK08773 225 IVWTLPDAEAERVLALDEAAFSRELTQAFAARLG--------EVRVASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHP 296 (392)
T ss_pred EEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhc--------CeEecCCccEeechhhhhhhhcCCcEEEEechhhcCCC
Confidence 7777652110 0111222222222222211110 00001122346666667789999999999999999999
Q ss_pred CCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHh
Q 040732 380 LTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYL 459 (541)
Q Consensus 380 ~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~ 459 (541)
+.|||+|+||+||..|+++|......+.+.....+|++|+++|+++...+......+.++|..+ .+....+|+..+..+
T Consensus 297 ~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~-~~~~~~~r~~~l~~~ 375 (392)
T PRK08773 297 LAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSND-EMHLTLLRGSVLGLA 375 (392)
T ss_pred chhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHH
Confidence 9999999999999999999986432221112356999999999999888888888999999876 467789999998887
Q ss_pred hcCCCChHhHHHhhcc
Q 040732 460 GLGGIYTSGAMALLSG 475 (541)
Q Consensus 460 ~~~~~~~~~~~~ll~g 475 (541)
..-.....-.+..++|
T Consensus 376 ~~~~~~k~~~~~~~~g 391 (392)
T PRK08773 376 GKLPPLVDALWKRASG 391 (392)
T ss_pred hhCHHHHHHHHHHHcC
Confidence 7655554444444433
No 14
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-42 Score=359.86 Aligned_cols=381 Identities=19% Similarity=0.200 Sum_probs=272.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCch
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLD 142 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~ 142 (541)
+..++||+||||||+|+++|+.|+++|++|+|+|+.+.... ...+..+++.+.+.|+++|++
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~------------------~~r~~~l~~~s~~~L~~lG~~ 64 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLR------------------DFRGDTVHPSTLELMDELGLL 64 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc------------------cccCceeChhHHHHHHHcCCh
Confidence 34679999999999999999999999999999999864332 234567899999999999999
Q ss_pred hhHhhccceeeeeeEEEECCeee-eecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEE
Q 040732 143 DCVEEIDAHPVVGYALFKDGKIT-KTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVK 220 (541)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~ 220 (541)
+.+......+...+.++..+... ...+...... ...++.+++..+.+.|.+.+.+.++++++.++ |+++..+++.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~ 143 (407)
T PRK06185 65 ERFLELPHQKVRTLRFEIGGRTVTLADFSRLPTP-YPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVT 143 (407)
T ss_pred hHHhhcccceeeeEEEEECCeEEEecchhhcCCC-CCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEE
Confidence 88876555566677776655422 2233221111 23456789999999999999887899999886 999988888887
Q ss_pred EEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEeecCCC--CCCeeEEEEcCCCcEEEEEccCC
Q 040732 221 GVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENCQLP--VPNHGHVVLTDPSPILFYPISSS 298 (541)
Q Consensus 221 gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~~~p--~~~~~~~~~~~~~~~~~~p~~~~ 298 (541)
+|.+..++|+ .+++||+||+|||.+|.+|+.++.+....++......+. ...+ .++....++.++++++++|.+ +
T Consensus 144 ~v~~~~~~g~-~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~llP~~-~ 220 (407)
T PRK06185 144 GVRARTPDGP-GEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFR-LPREPDDPESLMGRFGPGQGLIMIDRG-D 220 (407)
T ss_pred EEEEEcCCCc-EEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEe-cCCCCCCCcccceEecCCcEEEEEcCC-C
Confidence 7887766665 347799999999999999999987654444333322222 2211 122344577888999999997 6
Q ss_pred ceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCC
Q 040732 299 EVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRH 378 (541)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~ 378 (541)
.+++.+..+. .........+..++.+. +...+| .+.+.+...........+|.....+.+|..+|++|+|||||.+|
T Consensus 221 ~~~i~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~p-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~ 297 (407)
T PRK06185 221 YWQCGYVIPK-GGYAALRAAGLEAFRER-VAELAP-ELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMS 297 (407)
T ss_pred eEEEEEEecC-CCchhhhhhhHHHHHHH-HHHhCc-cHHHHHhhcCCccccEEEEEeccccccccCCCeEEEeccccccC
Confidence 7777777663 22222222222222222 211122 23322322222334566777777778899999999999999999
Q ss_pred CCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCC-hHHHHHHHHHHHH
Q 040732 379 PLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASS-DEAREVMRQASVD 457 (541)
Q Consensus 379 P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~-~~~~~~lr~~~~~ 457 (541)
|++|||+|+||+|+..|++.|.+....++. ....|+.|+++|++....+..+++.+.++|..+. .+....+|+..+.
T Consensus 298 P~~GqG~nlgl~Da~~La~~l~~~~~~~~~--~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~ 375 (407)
T PRK06185 298 PVGGVGINLAIQDAVAAANILAEPLRRGRV--SDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPALAGRGPLGPPLLLR 375 (407)
T ss_pred cccccchhHHHHHHHHHHHHHHHHhccCCc--cHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccccccCccccCCchHHH
Confidence 999999999999999999999875322222 2479999999999999999999999999998663 1556888888888
Q ss_pred HhhcCCCChHhHH
Q 040732 458 YLGLGGIYTSGAM 470 (541)
Q Consensus 458 ~~~~~~~~~~~~~ 470 (541)
.+...+.+....+
T Consensus 376 ~~~~~~~~k~~~~ 388 (407)
T PRK06185 376 LLNRLPWLRRLPA 388 (407)
T ss_pred HHHhChhHHHhhH
Confidence 7776654444333
No 15
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=3.5e-42 Score=370.92 Aligned_cols=378 Identities=22% Similarity=0.197 Sum_probs=264.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
...+||+||||||+|+++|+.|+++|++|+||||.+.... ...+..+++++++.|+++|+.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~------------------~~ra~~l~~~~~~~L~~lGl~~ 69 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD------------------LPRAVGIDDEALRVLQAIGLAD 69 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC------------------CCceeeeCHHHHHHHHHcCChh
Confidence 4568999999999999999999999999999999976544 3445678999999999999998
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCC-C-CCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPL-G-NFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVK 220 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~-~-~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~ 220 (541)
.+.... .+..++.++.........++. . ........+.++|..+++.|++.+.+.+++++++++ |+++.++++.+
T Consensus 70 ~l~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v- 147 (538)
T PRK06183 70 EVLPHT-TPNHGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGV- 147 (538)
T ss_pred HHHhhc-ccCCceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeE-
Confidence 877632 344455555422212222221 1 001112235688999999999999888899999997 99998877654
Q ss_pred EEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecC--CCCCCeeEEEEcCCCcEEEEEccC
Q 040732 221 GVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQ--LPVPNHGHVVLTDPSPILFYPISS 297 (541)
Q Consensus 221 gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~--~p~~~~~~~~~~~~~~~~~~p~~~ 297 (541)
.|+++..+|++.+++||+||+|||.+|.+|+.++.+.....+...++.+. ... .........++.+++++.++|.++
T Consensus 148 ~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (538)
T PRK06183 148 TVTLTDADGQRETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPH 227 (538)
T ss_pred EEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCC
Confidence 35555447766678899999999999999999987655444333333332 111 112234456777888999999998
Q ss_pred CceEEEEEecCCCCCCCC-CchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCC
Q 040732 298 SEVRCLVDVPAGQKLPSI-ANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNM 376 (541)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~ 376 (541)
+..+|.+....++..... +.+.+.+++..+. ..+.. .+......+......+.+|..|||+|+|||||.
T Consensus 228 ~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~-------~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~ 297 (538)
T PRK06183 228 GRRRWEFMLLPGETEEQLASPENVWRLLAPWG---PTPDD-------AELIRHAVYTFHARVADRWRSGRVLLAGDAAHL 297 (538)
T ss_pred CeEEEEEEeCCCCChhhcCCHHHHHHHHHhhC---CCCcc-------eEEEEEEeeeEccEEhhhhccCCEEEEechhhc
Confidence 888877665423222222 2333444443321 00000 000122334444556788999999999999999
Q ss_pred CCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 040732 377 RHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASV 456 (541)
Q Consensus 377 ~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~ 456 (541)
++|++|||||+||+||.+|+|+|+.+.. +...+.+|++|+++|++++..++..+..+.+++... ++....+|+..+
T Consensus 298 ~~P~~GQG~n~gi~DA~~La~kLa~~~~---g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~~~~~~R~~~l 373 (538)
T PRK06183 298 MPPFAGQGMNSGIRDAANLAWKLAAVLR---GRAGDALLDTYEQERRPHARAMIDLAVRLGRVICPT-DRLAAALRDAVL 373 (538)
T ss_pred CCCccccchhhhHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CHHHHHHHHHHH
Confidence 9999999999999999999999986422 123467999999999999999999999999999765 577789999888
Q ss_pred HHhhcCCCChHhHHHhhcc
Q 040732 457 DYLGLGGIYTSGAMALLSG 475 (541)
Q Consensus 457 ~~~~~~~~~~~~~~~ll~g 475 (541)
..+..............++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~ 392 (538)
T PRK06183 374 RALNYLPPLKRYVLEMRFK 392 (538)
T ss_pred HhhhcCcchhhhhhhccCC
Confidence 8765444433333333333
No 16
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=5.8e-42 Score=355.54 Aligned_cols=368 Identities=20% Similarity=0.270 Sum_probs=261.0
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHhh
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVEE 147 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~~ 147 (541)
||+||||||+|+++|+.|+++|++|+|+||.+.+.....+. ...+..+++++.+.|+++|+++.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~-------------~~~~~~l~~~~~~~l~~lGl~~~~~~ 67 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGF-------------DNRVSALSAASIRLLEKLGVWDKIEP 67 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCC-------------CcceeecCHHHHHHHHHCCchhhhhh
Confidence 79999999999999999999999999999998643310000 13456789999999999999988876
Q ss_pred ccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEc
Q 040732 148 IDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKT 226 (541)
Q Consensus 148 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~ 226 (541)
....+..++.++..+......++.........++.++|.++.+.|.+.+.+.++++++.++ |+++..+++. +.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~---~~v~~ 144 (385)
T TIGR01988 68 DRAQPIRDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDH---VELTL 144 (385)
T ss_pred hcCCCceEEEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe---eEEEE
Confidence 3345566666665543222333322222233568899999999999999888669999986 9999876663 45556
Q ss_pred CCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCCceEEEEE
Q 040732 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSSEVRCLVD 305 (541)
Q Consensus 227 ~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 305 (541)
++|+. +.+|+||+|||.+|.+|+.++.+.....+...++... ....+.+...+.++.++++++++|++++..++.+.
T Consensus 145 ~~g~~--~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~ 222 (385)
T TIGR01988 145 DDGQQ--LRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLPLPDNRSSLVWT 222 (385)
T ss_pred CCCCE--EEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEE
Confidence 77875 5599999999999999999986543333222333221 22233334444566677889999999998888777
Q ss_pred ecCCC--CCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCCCCc
Q 040732 306 VPAGQ--KLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGG 383 (541)
Q Consensus 306 ~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~~Gq 383 (541)
.+... .....+.+++.+.+.+.+.+... ..........+|....+..+|..+|++|+|||||.++|++||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~ 294 (385)
T TIGR01988 223 LPPEEAERLLALSDEEFLAELQRAFGSRLG--------AITLVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQ 294 (385)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHHHhhhcC--------ceEeccCcceeechhhhhhheecCceEEEecccccCCccccc
Confidence 65211 01122334444444443221111 111123445566666667788999999999999999999999
Q ss_pred chhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHhhcC
Q 040732 384 GMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYLGLG 462 (541)
Q Consensus 384 G~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~~~~ 462 (541)
|+|+||+||.+|+++|......+.......+|+.|+++|++++..++..++.++++|... ++....+|+..++.+...
T Consensus 295 G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~ 372 (385)
T TIGR01988 295 GLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSND-FPPLRLLRNLGLRLLNLL 372 (385)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhhC
Confidence 999999999999999986421111112367999999999999999999999999999865 456788898888776543
No 17
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=3.7e-42 Score=357.86 Aligned_cols=383 Identities=17% Similarity=0.162 Sum_probs=260.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
.++||+||||||+|+++|+.|+++|++|+|+||.+.+... .... .+.+..+++++.+.|+++|+++.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~~~------------~g~~i~l~~~~~~~L~~lGl~~~ 68 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALA-DPAF------------DGREIALTHASREILQRLGAWDR 68 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCccccc-CCCC------------chhHHHhhHHHHHHHHHCCChhh
Confidence 3689999999999999999999999999999998753210 0000 23344688999999999999988
Q ss_pred HhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEE
Q 040732 145 VEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVH 223 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~ 223 (541)
+......+..++.++.........++.........++.++|..+.+.|.+.+.+.+++++++++ |+++..+++. +.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~---~~ 145 (392)
T PRK09126 69 IPEDEISPLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG---AQ 145 (392)
T ss_pred hccccCCccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe---EE
Confidence 7654444555555554322222333322222334567789999999999988776789999997 8888776653 44
Q ss_pred EEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCCceEE
Q 040732 224 YKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSSEVRC 302 (541)
Q Consensus 224 v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~ 302 (541)
+..++|++ +.||+||+|||.+|.+|+.++.+..........+... ....+.....+.+++.+++++++|.+++..++
T Consensus 146 v~~~~g~~--~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 223 (392)
T PRK09126 146 VTLANGRR--LTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLALLPLNGHLSSL 223 (392)
T ss_pred EEEcCCCE--EEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeEEeECCCCCEEE
Confidence 55567764 5699999999999999999976443222222222211 22223344456677878889999999998888
Q ss_pred EEEecCCCC--CCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCC
Q 040732 303 LVDVPAGQK--LPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPL 380 (541)
Q Consensus 303 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~ 380 (541)
++.++.... ....+.++..+.+.+.+...+. ..........+|.....+++|..+|++|+|||||.++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~ 295 (392)
T PRK09126 224 VLTLPPDQIEALLALDPEAFAAEVTARFKGRLG--------AMRLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPV 295 (392)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcc--------CeEEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCc
Confidence 776652110 0011222222222221111000 000112334556665666788899999999999999999
Q ss_pred CCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHhh
Q 040732 381 TGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYLG 460 (541)
Q Consensus 381 ~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~~ 460 (541)
+|||+|+||+||..|+++|......+.....+++|+.|+++|++++..++..++.+.++|..+ ++....+|+.++..+.
T Consensus 296 ~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~ 374 (392)
T PRK09126 296 TAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTDD-RPPARLLRRAVLRAAN 374 (392)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHh
Confidence 999999999999999999977531111112367999999999999999999999999999865 4667899999998876
Q ss_pred cCCCChHhHHHhhc
Q 040732 461 LGGIYTSGAMALLS 474 (541)
Q Consensus 461 ~~~~~~~~~~~ll~ 474 (541)
..+.+..-.+..++
T Consensus 375 ~~~~~~~~~~~~~~ 388 (392)
T PRK09126 375 RFPPLKQAIAKQLT 388 (392)
T ss_pred hChHHHHHHHHHHh
Confidence 55444443333333
No 18
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=2.8e-41 Score=350.52 Aligned_cols=360 Identities=23% Similarity=0.289 Sum_probs=247.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
..+||+||||||+|+++|+.|+++|++|+|+||.+.... ...+..++|++.+.|+++|+++.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~------------------~~~~~~l~~~~~~~L~~lGl~~~ 65 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRA------------------QNGADLLKPSGIGVVRAMGLLDD 65 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccC------------------CCcccccCccHHHHHHHcCCHHH
Confidence 568999999999999999999999999999999986543 23345699999999999999998
Q ss_pred HhhccceeeeeeEEEECCeee-eecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEE
Q 040732 145 VEEIDAHPVVGYALFKDGKIT-KTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGV 222 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV 222 (541)
+.........++.++.+++.. ...+. ..........++|.++.+.|.+.+.+.+++++++++ |+++..+++.+ .+
T Consensus 66 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~~ 142 (388)
T PRK07045 66 VFAAGGLRRDAMRLYHDKELIASLDYR--SASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGT-VT 142 (388)
T ss_pred HHhcccccccceEEecCCcEEEEecCC--ccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCc-EE
Confidence 876443334455555555432 22222 111111224578999999999999877899999997 99988765432 12
Q ss_pred EEEcCCCcEEEEEcCEEEEecCCCCcccccc-cCCCcccc---cceEEEEEeecCCCCCCeeEEEEcC-CCcEEEEEccC
Q 040732 223 HYKTKDGQEHKSYAPLTIVCDGGFSNLRRSL-CNPKVDIP---SCFVGMALENCQLPVPNHGHVVLTD-PSPILFYPISS 297 (541)
Q Consensus 223 ~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l-~~~~~~~~---~~~~g~~~~~~~~p~~~~~~~~~~~-~~~~~~~p~~~ 297 (541)
.++.++|++ +.+|+||+|||.+|.+|+.+ +.+..... ....+.+...... +.....++.+ .+.++++|.++
T Consensus 143 ~v~~~~g~~--~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~ 218 (388)
T PRK07045 143 SVTLSDGER--VAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSV--RECNRLYVDSNQGLAYFYPIGD 218 (388)
T ss_pred EEEeCCCCE--EECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCc--cccceEEEcCCCceEEEEEcCC
Confidence 344567764 56999999999999999964 43322111 1223332211111 2223345544 45678899998
Q ss_pred CceEEEEEecCCCCCC---CCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccC
Q 040732 298 SEVRCLVDVPAGQKLP---SIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAF 374 (541)
Q Consensus 298 ~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAa 374 (541)
+..++++.++..+... ....+++.+.+.+++. +.+.+.+........+..++......++|..+|++|+||||
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAA 294 (388)
T PRK07045 219 QATRLVVSFPADEMQGYLADTTRTKLLARLNEFVG----DESADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAA 294 (388)
T ss_pred CcEEEEEEeccccchhccCCCCHHHHHHHHhhhcC----ccchHHHhccCcccccceeecCccccccccCCCEEEEEccc
Confidence 8888887776322111 1123344444444332 22222221111112333445666667789999999999999
Q ss_pred CCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 040732 375 NMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQA 454 (541)
Q Consensus 375 h~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~ 454 (541)
|.++|++|||+|+||+||..|+++|.... .+...+.++|+.|+++|++++..++..++.+.+.|+.+ ++..+..|..
T Consensus 295 H~~~P~~GqG~n~ai~Da~~La~~L~~~~--~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 371 (388)
T PRK07045 295 HSIHPITGQGMNLAIEDAGELGACLDLHL--SGQIALADALERFERIRRPVNEAVISYGHALATTYHDR-AALVANFRSQ 371 (388)
T ss_pred cccCCCccccHHHHHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccc-hhHHHHHHhh
Confidence 99999999999999999999999998642 12335688999999999999999999999999999765 4666666666
Q ss_pred HH
Q 040732 455 SV 456 (541)
Q Consensus 455 ~~ 456 (541)
+.
T Consensus 372 ~~ 373 (388)
T PRK07045 372 LQ 373 (388)
T ss_pred hh
Confidence 53
No 19
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=6.3e-41 Score=348.43 Aligned_cols=382 Identities=19% Similarity=0.235 Sum_probs=258.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
..+||+||||||+|+++|+.|+++|++|+|+|+.+...... +... ......+++++.+.|+.+|+++.
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~-~~~~-----------~~r~~~l~~~~~~~l~~lGl~~~ 71 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDA-DSQP-----------DVRISAISAASVALLKGLGVWDA 71 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccc-cCCC-----------CceEEeccHHHHHHHHHcCChhh
Confidence 56899999999999999999999999999999976322100 0000 12234688999999999999988
Q ss_pred HhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEE
Q 040732 145 VEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVH 223 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~ 223 (541)
+......+...+..+..... ...+..........++.++|..|.+.|.+.+.+.+++++++++ |+++..+++. +.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~ 147 (391)
T PRK08020 72 VQAMRSHPYRRLETWEWETA-HVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG---WE 147 (391)
T ss_pred hhhhhCcccceEEEEeCCCC-eEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe---EE
Confidence 77533333334433322111 1222212222234567899999999999999888899999886 8888766653 44
Q ss_pred EEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCCceEE
Q 040732 224 YKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSSEVRC 302 (541)
Q Consensus 224 v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~ 302 (541)
+..++|++ ++||+||+|||.+|.+|+.++.+.....+...++.+. ....+..+..+..+...++..++|+.++...+
T Consensus 148 v~~~~g~~--~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~ 225 (391)
T PRK08020 148 LTLADGEE--IQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPRAFLPLFDNWASL 225 (391)
T ss_pred EEECCCCE--EEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCEEEeECCCCcEEE
Confidence 55567764 5699999999999999999986544333334444332 22333334445556677888899998776555
Q ss_pred EEEecCCCC---CCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCC
Q 040732 303 LVDVPAGQK---LPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHP 379 (541)
Q Consensus 303 ~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P 379 (541)
++..+ ... ....+.+++.+.+.+. +++.+. . +.......+|....++.+|..+|++|+|||||.+||
T Consensus 226 v~~~~-~~~~~~~~~~~~~~~~~~l~~~----~~~~~~----~-~~~~~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P 295 (391)
T PRK08020 226 VWYDS-PARIRQLQAMSMAQLQQEIAAH----FPARLG----A-VTPVAAGAFPLTRRHALQYVQPGLALVGDAAHTINP 295 (391)
T ss_pred EEECC-HHHHHHHHCCCHHHHHHHHHHH----hhhhcc----c-eEeccccEeecceeehhhhccCcEEEEechhhccCC
Confidence 54332 110 0011122222222221 111110 0 111133456777677889999999999999999999
Q ss_pred CCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHh
Q 040732 380 LTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYL 459 (541)
Q Consensus 380 ~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~ 459 (541)
+.|||+|+||+||..|+++|......+.......+|+.|+++|+++...++..++.++++|+.+. +....+|+..+..+
T Consensus 296 ~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~-~~~~~~R~~~l~~~ 374 (391)
T PRK08020 296 LAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNL-PPLRFARNLGLMAA 374 (391)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHH
Confidence 99999999999999999999865322222224679999999999999999999999999999774 56789999999888
Q ss_pred hcCCCChHhHHHhhcc
Q 040732 460 GLGGIYTSGAMALLSG 475 (541)
Q Consensus 460 ~~~~~~~~~~~~ll~g 475 (541)
..-+....-.+....|
T Consensus 375 ~~~~~~k~~~~~~~~g 390 (391)
T PRK08020 375 QRAGVLKRQALKYALG 390 (391)
T ss_pred hcCHHHHHHHHHHHcC
Confidence 7666555444444433
No 20
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=6.6e-41 Score=364.11 Aligned_cols=352 Identities=16% Similarity=0.176 Sum_probs=243.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhC-CCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCc
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTD-GRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGL 141 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~-G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl 141 (541)
|+.++||+||||||+||++|+.|+++ |++|+||||.+.... .+.+..+++++++.|+++|+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~------------------~grA~gl~prtleiL~~lGl 90 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLE------------------LGQADGIACRTMEMFQAFGF 90 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCC------------------CCeeeEEChHHHHHHHhccc
Confidence 56789999999999999999999995 999999999876544 44556789999999999999
Q ss_pred hhhHhhccceeeeeeEEEECCee--eee----cCC-CCCCCCCccceeecchHHHHHHHHHHHcCCC-eEEEeCe-EEEe
Q 040732 142 DDCVEEIDAHPVVGYALFKDGKI--TKT----PYP-LGNFQANVAGRSFHNGRFIQRMREKAASLPN-VRMEEGT-VTSL 212 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~~~~~~g~~--~~~----~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-v~v~~~~-v~~l 212 (541)
++.+... ..+...+.++..+.. ..+ .+. ............++|.++++.|.+.+.+.++ +.+.+++ ++++
T Consensus 91 ~d~l~~~-g~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~ 169 (634)
T PRK08294 91 AERILKE-AYWINETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDL 169 (634)
T ss_pred hHHHHhh-cccccceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEE
Confidence 9988763 334455555543211 000 000 0000111122578999999999999987753 6788887 8998
Q ss_pred eeeCC--eEEEEEEEcC----CCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe---ecCCCCCCeeEEE
Q 040732 213 FEENG--IVKGVHYKTK----DGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE---NCQLPVPNHGHVV 283 (541)
Q Consensus 213 ~~~~~--~v~gV~v~~~----~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~---~~~~p~~~~~~~~ 283 (541)
..++. ..+.|++.+. +|++.+++||+||+|||++|.||++++++.........+.+.. ...+|+......+
T Consensus 170 ~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~ 249 (634)
T PRK08294 170 EVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAI 249 (634)
T ss_pred EECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEE
Confidence 76532 2123555443 4655678899999999999999999988665554443333222 2344543333333
Q ss_pred E-cCCCcEEEEEccCCc-eEEEEEecCC--CC---CCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCcc
Q 040732 284 L-TDPSPILFYPISSSE-VRCLVDVPAG--QK---LPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRS 356 (541)
Q Consensus 284 ~-~~~~~~~~~p~~~~~-~~~~~~~~~~--~~---~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 356 (541)
. .++++++++|..++. +++++..... .. ....+.+++.+.+++.+.|...+ +. ....+..++...
T Consensus 250 ~~~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~-~~-------~v~w~s~y~i~~ 321 (634)
T PRK08294 250 QSASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLD-VK-------EVAWWSVYEVGQ 321 (634)
T ss_pred ecCCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCc-ee-------EEeEEecccccc
Confidence 3 467899999999884 6666654311 11 12345566666666554432111 10 112334455444
Q ss_pred ccCCCC----------CCCcEEEecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChh
Q 040732 357 MPAAPK----------TTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVA 426 (541)
Q Consensus 357 ~~~~~~----------~~~~vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~ 426 (541)
+.+.+| +.+||+|+|||||.++|.+|||||+||+||.+|+|+|+.+.. +.+.+.+|++|+.+|++++
T Consensus 322 r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~---g~a~~~lL~tYe~ERrp~a 398 (634)
T PRK08294 322 RLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLS---GRSPPELLHTYSAERQAIA 398 (634)
T ss_pred eehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHH
Confidence 444444 469999999999999999999999999999999999987532 1234679999999999999
Q ss_pred HHHHHHHHHHHhhhcCCC
Q 040732 427 STINTLANSAYQVFSASS 444 (541)
Q Consensus 427 ~~i~~ls~~l~~~~~~~~ 444 (541)
+.++..++.+.++|+..+
T Consensus 399 ~~li~~~~~~~~l~~~~~ 416 (634)
T PRK08294 399 QELIDFDREWSTMMAAPP 416 (634)
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 999999999999997653
No 21
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=3.1e-41 Score=352.25 Aligned_cols=379 Identities=18% Similarity=0.182 Sum_probs=263.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCC--CcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDG--RRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G--~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
.|||+||||||+|+++|+.|+++| ++|+|+||.+...... ...+..+++++.+.|+++|+++
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~----------------~~~~~~l~~~~~~~l~~lGl~~ 64 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSR----------------DPRASAIAAAARRMLEALGVWD 64 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCC----------------CcceEEecHHHHHHHHHCCChh
Confidence 379999999999999999999996 9999999987432200 3567789999999999999998
Q ss_pred hHhhccceeeeeeEEEEC-Cee----eeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCC
Q 040732 144 CVEEIDAHPVVGYALFKD-GKI----TKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENG 217 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~-g~~----~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~ 217 (541)
.+... ..+...+.++.. +.. ....+..........++.++|..+.+.|.+.+.+. ++++++++ |+++..+++
T Consensus 65 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~ 142 (403)
T PRK07333 65 EIAPE-AQPITDMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEAL-GIDLREATSVTDFETRDE 142 (403)
T ss_pred hhhhh-cCcccEEEEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCC
Confidence 88753 334455555542 111 01121111111233456789999999999999887 89999887 888877666
Q ss_pred eEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEcc
Q 040732 218 IVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPIS 296 (541)
Q Consensus 218 ~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~ 296 (541)
. +.+..++|+. ++||+||+|||.+|.+|+.++.+.....+...+++.. ....+..+....++.++++++++|.+
T Consensus 143 ~---v~v~~~~g~~--~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pl~ 217 (403)
T PRK07333 143 G---VTVTLSDGSV--LEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAGPFAILPLK 217 (403)
T ss_pred E---EEEEECCCCE--EEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCCceEEeECC
Confidence 3 4455667764 5699999999999999999987654444444554443 22223334455667788899999999
Q ss_pred CCceEEEEEecCCCCCC---CCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEeccc
Q 040732 297 SSEVRCLVDVPAGQKLP---SIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDA 373 (541)
Q Consensus 297 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDA 373 (541)
+++.++.+..+ ..... ........+.+.+.+...+.+ .........++....+..+|..+|++|+|||
T Consensus 218 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~grv~LvGDA 288 (403)
T PRK07333 218 GNRSSLVWTER-TADAERLVALDDLVFEAELEQRFGHRLGE--------LKVLGKRRAFPLGLTLARSFVAPRFALVGDA 288 (403)
T ss_pred CCCeEEEEECC-HHHHHHHHCCCHHHHHHHHHHHhhhhcCc--------eEeccCccEeechhhhhhhccCCCEEEEech
Confidence 99887665543 11000 011111222222211111100 0001122345555566778999999999999
Q ss_pred CCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 040732 374 FNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQ 453 (541)
Q Consensus 374 ah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~ 453 (541)
||.++|+.|||+|+||+||.+|+++|......+.......+|++|+++|+++...++..++.+.++|..+ ++....+|+
T Consensus 289 AH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~ 367 (403)
T PRK07333 289 AHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSND-STLLRSVRD 367 (403)
T ss_pred hhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC-chHHHHHHH
Confidence 9999999999999999999999999986532221123478999999999999999999999999999866 466788999
Q ss_pred HHHHHhhcCCCChHhHHHhhccCC
Q 040732 454 ASVDYLGLGGIYTSGAMALLSGLN 477 (541)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~ll~g~~ 477 (541)
..+..+..-+......+..+.|+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~g~~ 391 (403)
T PRK07333 368 IGLGLVDRLPKLKSFFIRQAAGLT 391 (403)
T ss_pred HHHHHHhcCHHHHHHHHHHHhCcC
Confidence 999888766656666666666654
No 22
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=6.8e-41 Score=347.78 Aligned_cols=367 Identities=17% Similarity=0.176 Sum_probs=260.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
+..+||+||||||+|+++|+.|+++|++|+||||.+...+ + + +..+.+++.+.|+++|+++
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~---~--------------r--~~~l~~~s~~~l~~lgl~~ 65 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD---L--------------R--TTALLGPSIRFLERLGLWA 65 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC---c--------------c--hhhCcHHHHHHHHHhCchh
Confidence 4568999999999999999999999999999999864322 0 2 2356778899999999998
Q ss_pred hHhhccceeeeeeEEEECCee-ee---ecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCe
Q 040732 144 CVEEIDAHPVVGYALFKDGKI-TK---TPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGI 218 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~-~~---~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~ 218 (541)
.+... ..+..++.++..+.. .. ..+..........++.+++..+.+.|.+.+.+.+++. +.++ |+++..+++.
T Consensus 66 ~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~ 143 (388)
T PRK07494 66 RLAPH-AAPLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE 143 (388)
T ss_pred hhHhh-cceeeEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe
Confidence 88653 445666776654321 11 1122112223345788999999999999998887787 5554 9998776664
Q ss_pred EEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccC
Q 040732 219 VKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISS 297 (541)
Q Consensus 219 v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~ 297 (541)
+.++.++|++ ++||+||+|||.+|.+|+.++.+.....+...++.+. ....++......++.+.+++.++|+++
T Consensus 144 ---~~v~~~~g~~--~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~Pl~~ 218 (388)
T PRK07494 144 ---VTVTLADGTT--LSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFHTEGGPFTQVPLPG 218 (388)
T ss_pred ---EEEEECCCCE--EEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEeCCCCcEEEEECCC
Confidence 4455667764 5699999999999999999987654444444454433 233444444456677888999999998
Q ss_pred CceEEEEEecCCC--CCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCC
Q 040732 298 SEVRCLVDVPAGQ--KLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFN 375 (541)
Q Consensus 298 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah 375 (541)
+..++++..+... .....+.+++.+.+.+.+. +.+...........+|.....+.+|..+|++|+|||||
T Consensus 219 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH 290 (388)
T PRK07494 219 RRSSLVWVVRPAEAERLLALSDAALSAAIEERMQ--------SMLGKLTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAH 290 (388)
T ss_pred CcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh--------hhcCCeEEccCCcEeechHHHHHhhccCceEEEEhhhh
Confidence 8776666544111 0111223333333332211 11111111223456777777778899999999999999
Q ss_pred CCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 040732 376 MRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQAS 455 (541)
Q Consensus 376 ~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~ 455 (541)
.+||++|||+|+|++||..|+++|.... .......+|+.|+++|+++...+...+..+.++|... .+....+|+..
T Consensus 291 ~~~P~~GqG~n~~l~Da~~La~~L~~~~---~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~ 366 (388)
T PRK07494 291 VFPPIGAQGLNLGLRDVATLVEIVEDRP---EDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSD-FLPVQDLRAAG 366 (388)
T ss_pred cCCchhhcccchhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHH
Confidence 9999999999999999999999997632 1223467999999999999999999999999999876 46678999999
Q ss_pred HHHhhcCCCChHh
Q 040732 456 VDYLGLGGIYTSG 468 (541)
Q Consensus 456 ~~~~~~~~~~~~~ 468 (541)
+..+...+....-
T Consensus 367 l~~~~~~~~~~~~ 379 (388)
T PRK07494 367 LHLLYSFGPLRRL 379 (388)
T ss_pred HHHHhhCHHHHHH
Confidence 8877665544433
No 23
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=355.69 Aligned_cols=372 Identities=19% Similarity=0.185 Sum_probs=258.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
++||+||||||+|+++|+.|+++|++|+||||.+.+.. ...++.+++++++.|+++|+++.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~------------------~~ra~~l~~~~~e~l~~lGl~~~l 63 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVP------------------YSKALTLHPRTLEILDMRGLLERF 63 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC------------------CcceeEecHHHHHHHHhcCcHHHH
Confidence 48999999999999999999999999999999976544 455678999999999999999888
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
.... .+.....+..... ...+.... ......+.++|..+++.|.+.+++. +++++.++ ++++..+++.+ .|++
T Consensus 64 ~~~~-~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~i~q~~le~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~v-~v~~ 137 (493)
T PRK08244 64 LEKG-RKLPSGHFAGLDT--RLDFSALD-TSSNYTLFLPQAETEKVLEEHARSL-GVEIFRGAEVLAVRQDGDGV-EVVV 137 (493)
T ss_pred Hhhc-ccccceEEecccc--cCCcccCC-CCCCcEEEecHHHHHHHHHHHHHHc-CCeEEeCCEEEEEEEcCCeE-EEEE
Confidence 7632 2333333322111 11221111 1123356789999999999999877 79999986 99988776644 2555
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCCceEEE
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSSEVRCL 303 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 303 (541)
.+.+|+ .+++||+||+|||.+|.+|++++++.......+.++... ....+.+.....++.+.++++++|++++..+++
T Consensus 138 ~~~~g~-~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~ 216 (493)
T PRK08244 138 RGPDGL-RTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSLCTREGGVMIVPLSGGIYRVL 216 (493)
T ss_pred EeCCcc-EEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEEEeCCceEEEEECCCCeEEEE
Confidence 544563 357799999999999999999987765555555555433 112222333455677888999999999888877
Q ss_pred EEecCCCC---CCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCC
Q 040732 304 VDVPAGQK---LPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPL 380 (541)
Q Consensus 304 ~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~ 380 (541)
+..+.... ....+.+++.+.+.+.....+. .........++.....+.+|..|||+|+|||||.++|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~ 287 (493)
T PRK08244 217 IIDPERPQVPKDEPVTLEELKTSLIRICGTDFG---------LNDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPA 287 (493)
T ss_pred EEcCCcccccCCCCCCHHHHHHHHHHhhCCCCC---------cCCeeEEEecccceeeHhhhccCcEEEeecceeccCCc
Confidence 65442111 1122344555555543321111 01112334566666777899999999999999999999
Q ss_pred CCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHhh
Q 040732 381 TGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYLG 460 (541)
Q Consensus 381 ~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~~ 460 (541)
+|||||+||+||.+|+|+|+.... ....+.+|++|+++|++++..+...++.+..++... +....+|+.+...+.
T Consensus 288 ~GqG~n~gi~DA~~La~~La~~l~---g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~~--~~~~~~R~~~~~~~~ 362 (493)
T PRK08244 288 GGQGLNVGLQDAMNLGWKLAAAIK---GWAPDWLLDSYHAERHPVGTALLRNTEVQTKLFDFT--RPGLALRSMLSDLLG 362 (493)
T ss_pred cccccccchhhHHHHHHHHHHHHc---CCCCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcCC--chhHHHHHHHHHHhc
Confidence 999999999999999999987532 112356899999999999999999998888888543 445677776555443
Q ss_pred cCCCChHhHHHhhccCC
Q 040732 461 LGGIYTSGAMALLSGLN 477 (541)
Q Consensus 461 ~~~~~~~~~~~ll~g~~ 477 (541)
. ..........++|+.
T Consensus 363 ~-~~~~~~~~~~~~~~~ 378 (493)
T PRK08244 363 F-PEVNRYLAGQISALD 378 (493)
T ss_pred c-hHHHHHHHHHHhcCC
Confidence 2 222233334445543
No 24
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=3.8e-41 Score=349.07 Aligned_cols=364 Identities=20% Similarity=0.239 Sum_probs=252.4
Q ss_pred cEEEECCChHHHHHHHHHhhCC-CcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 68 DVIVVGAGVAGAALAHTLGTDG-RRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G-~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
||+||||||+|+++|+.|+++| ++|+|+||.+.+.....+ ...++.++|++.+.|+++|+++.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~--------------~~~~~~l~~~~~~~l~~lgl~~~~~ 66 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGF--------------DARSLALSYGSKQILEKLGLWPKLA 66 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCC--------------CCeeEeccHHHHHHHHHCCChhhhH
Confidence 7999999999999999999999 999999998754431000 2345789999999999999998886
Q ss_pred hccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE
Q 040732 147 EIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYK 225 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~ 225 (541)
.. ..+..++.+...+......+..........++.++|.+|.+.|.+.+.+.++++++.++ |+++..+++. +++.
T Consensus 67 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~---~~v~ 142 (382)
T TIGR01984 67 PF-ATPILDIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY---VRVT 142 (382)
T ss_pred hh-cCccceEEEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe---EEEE
Confidence 54 23344444443322112222222222233467899999999999999876689999876 9998876653 4555
Q ss_pred cCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCC-ceEEE
Q 040732 226 TKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSS-EVRCL 303 (541)
Q Consensus 226 ~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~-~~~~~ 303 (541)
.++|++ +.||+||+|||.+|.+|+.++.+.....+....+... ....+........+.++++++++|.+++ ..+++
T Consensus 143 ~~~g~~--~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~ 220 (382)
T TIGR01984 143 LDNGQQ--LRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALLPLKDNYRSSLV 220 (382)
T ss_pred ECCCCE--EEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEECcCCCCCCEEEE
Confidence 667764 5699999999999999999987544333323333221 2223333333445667778999999988 66666
Q ss_pred EEecCCCC--CCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCCC
Q 040732 304 VDVPAGQK--LPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLT 381 (541)
Q Consensus 304 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~~ 381 (541)
+..+.... ....+.++..+.+.+.+. +. +...........++.......+|..+||+|+|||||.++|++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~ 292 (382)
T TIGR01984 221 WCLPSKQADTIANLPDAEFLAELQQAFG----WR----LGKITQVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIA 292 (382)
T ss_pred EECCHHHHHHHHcCCHHHHHHHHHHHHh----hh----ccCeEEcCCccEeecchhhhhheecCCEEEEeecccccCCcc
Confidence 65541110 011122233333333211 11 111112234455666666677889999999999999999999
Q ss_pred CcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHhhc
Q 040732 382 GGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYLGL 461 (541)
Q Consensus 382 GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~~~ 461 (541)
|||+|+||+||..|+++|....+ ....+.+|+.|+++|+++...++.++..+.++|..+ .+....+|+..++.+..
T Consensus 293 GqG~~~al~Da~~La~~L~~~~~---~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~ 368 (382)
T TIGR01984 293 GQGFNLGLRDVETLAEVLIDARI---DLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNH-IPLLRALRNLGLLALEN 368 (382)
T ss_pred ccchhhhHHHHHHHHHHHHHhcc---CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhc
Confidence 99999999999999999976421 112367999999999999999999999999999865 45668899988887654
Q ss_pred CC
Q 040732 462 GG 463 (541)
Q Consensus 462 ~~ 463 (541)
-+
T Consensus 369 ~p 370 (382)
T TIGR01984 369 FP 370 (382)
T ss_pred CH
Confidence 43
No 25
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=350.95 Aligned_cols=366 Identities=20% Similarity=0.217 Sum_probs=256.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
.++||+||||||+|+++|+.|+++|++|+||||.+.+.. . ...+..+++++++.|+++|+++.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~-~----------------~~Ra~~l~~~s~~~L~~lGl~~~ 64 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQEL-V----------------GSRAGGLHARTLEVLDQRGIADR 64 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-C----------------CcceeeECHHHHHHHHHcCcHHH
Confidence 458999999999999999999999999999999874321 0 12234589999999999999988
Q ss_pred HhhccceeeeeeEEEECCeeeeecCCCCCCC-CCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEE
Q 040732 145 VEEIDAHPVVGYALFKDGKITKTPYPLGNFQ-ANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGV 222 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV 222 (541)
+..... ...... +. .....+ .... ....++.+.+..+++.|.+.+++. ++++++++ |+++.++++. |
T Consensus 65 l~~~~~-~~~~~~-~~---~~~~~~--~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~v~~~~~~---v 133 (488)
T PRK06834 65 FLAQGQ-VAQVTG-FA---ATRLDI--SDFPTRHNYGLALWQNHIERILAEWVGEL-GVPIYRGREVTGFAQDDTG---V 133 (488)
T ss_pred HHhcCC-ccccce-ee---eEeccc--ccCCCCCCccccccHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCCe---E
Confidence 875321 111000 00 011111 1111 123456788899999999999887 89999987 9998887663 4
Q ss_pred EEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEeecCCCCCCeeEEEEcCCCcEEEEEcc-CCceE
Q 040732 223 HYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENCQLPVPNHGHVVLTDPSPILFYPIS-SSEVR 301 (541)
Q Consensus 223 ~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~-~~~~~ 301 (541)
.+..++|+ +++||+||+|||.+|.+|+.++++.+...+...+++.. ..++.+........+.++..+.|.. ++..+
T Consensus 134 ~v~~~~g~--~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~d-v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 210 (488)
T PRK06834 134 DVELSDGR--TLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAE-VEMTEEPEWGVHRDALGIHAFGRLEDEGPVR 210 (488)
T ss_pred EEEECCCC--EEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEE-EEecCCCCcceeeCCCceEEEeccCCCCeEE
Confidence 45556675 36699999999999999999998777666555554432 3332221122334455677777776 56566
Q ss_pred EEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCCC
Q 040732 302 CLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLT 381 (541)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~~ 381 (541)
+.+..+........+.++..+.+.+.+...+.. .....+..++.....+.+|..|||+|+|||||.++|+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~---------~~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~g 281 (488)
T PRK06834 211 VMVTEKQVGATGEPTLDDLREALIAVYGTDYGI---------HSPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVG 281 (488)
T ss_pred EEEecCCCCCCCCCCHHHHHHHHHHhhCCCCcc---------ccceeEEeccccceecccccCCcEEEEeeccccCCccc
Confidence 655543221122334455555555544322211 01124456777777899999999999999999999999
Q ss_pred CcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHhhc
Q 040732 382 GGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYLGL 461 (541)
Q Consensus 382 GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~~~ 461 (541)
|||||+||+||.+|+|+|+.+.. +...+.+|++|+++|++.+..+...+..+..++. +++....+|+..++++..
T Consensus 282 GQG~N~gi~DA~nLawkLa~vl~---g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~--~~~~~~~lR~~~~~~~~~ 356 (488)
T PRK06834 282 GQGLNTGVQDAVNLGWKLAQVVK---GTSPESLLDTYHAERHPVAARVLRNTMAQVALLR--PDDRTEALRDIVAELLGM 356 (488)
T ss_pred cccccccHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CChHHHHHHHHHHHHhcC
Confidence 99999999999999999987532 1224679999999999999999999988888876 356678999999888776
Q ss_pred CCCChHhHHHhhccC
Q 040732 462 GGIYTSGAMALLSGL 476 (541)
Q Consensus 462 ~~~~~~~~~~ll~g~ 476 (541)
.+. .......++|+
T Consensus 357 ~~~-~~~~~~~~~g~ 370 (488)
T PRK06834 357 DEP-RKRIAAMMSGL 370 (488)
T ss_pred cHH-HHHHHHHHhcC
Confidence 554 55555556665
No 26
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=9.8e-40 Score=339.08 Aligned_cols=381 Identities=19% Similarity=0.185 Sum_probs=251.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
++||+||||||+|+++|+.|+++|++|+|+||.+..... + ...+..++|++++.|+++|+++.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~--~--------------~~~a~~l~~~~~~~l~~lGl~~~l 65 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVE--G--------------RIRAGVLEQGTVDLLREAGVGERM 65 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccc--c--------------ccceeEECHhHHHHHHHcCChHHH
Confidence 579999999999999999999999999999998742110 0 233446899999999999999998
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
... ..+..++.++.+++.....++.. ........+++..+.+.|.+.+.+. ++++++++ ++++.+.++....|++
T Consensus 66 ~~~-~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~Ll~~a~~~-gv~v~~~~~v~~i~~~~~~~~~V~~ 141 (392)
T PRK08243 66 DRE-GLVHDGIELRFDGRRHRIDLTEL--TGGRAVTVYGQTEVTRDLMAARLAA-GGPIRFEASDVALHDFDSDRPYVTY 141 (392)
T ss_pred Hhc-CCccCcEEEEECCEEEEeccccc--cCCceEEEeCcHHHHHHHHHHHHhC-CCeEEEeeeEEEEEecCCCceEEEE
Confidence 764 34556777776665444444321 1122234567888888898887765 78898887 8888763333334555
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcccccccCCCcc-cccc-eEEEEEeecCCCCCCeeEEEEc-CCCcEEEEEccCCceE
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVD-IPSC-FVGMALENCQLPVPNHGHVVLT-DPSPILFYPISSSEVR 301 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~-~~~~-~~g~~~~~~~~p~~~~~~~~~~-~~~~~~~~p~~~~~~~ 301 (541)
. .+|++.+++||+||+|||.+|.+|++++..... .... ..++.......+.......+.. +.+..+++|.+++..+
T Consensus 142 ~-~~G~~~~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (392)
T PRK08243 142 E-KDGEEHRLDCDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAPPVSDELIYANHERGFALCSMRSPTRSR 220 (392)
T ss_pred E-cCCeEEEEEeCEEEECCCCCCchhhhcCcchhhceecccCceEEEEeCCCCCCCCceEEeeCCCceEEEecCCCCcEE
Confidence 2 467766788999999999999999998753211 1100 0122111112222211222333 3344555555566566
Q ss_pred EEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCCC
Q 040732 302 CLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLT 381 (541)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~~ 381 (541)
+++.++..+....++.++..+.+++.+.+.....+. .. .......++.......+|..||++|+|||||.++|++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~ 295 (392)
T PRK08243 221 YYLQCPLDDKVEDWSDERFWDELRRRLPPEDAERLV----TG-PSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTG 295 (392)
T ss_pred EEEEecCCCCcccCChhHHHHHHHHhcCcccccccc----cC-ccccccceeeeeceeccceeCCEEEEecccccCCCCc
Confidence 666555333334444555555555544322111110 00 0001123344455567888999999999999999999
Q ss_pred CcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCC--hHHHHHHHHHHHHHh
Q 040732 382 GGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASS--DEAREVMRQASVDYL 459 (541)
Q Consensus 382 GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~--~~~~~~lr~~~~~~~ 459 (541)
|||+|+||+||..|+++|...... +.+.+|+.|+++|++++..++..++.+.+++...+ .+....+|+.+++.+
T Consensus 296 GqG~n~ai~Da~~La~~L~~~~~~----~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (392)
T PRK08243 296 AKGLNLAASDVRYLARALVEFYRE----GDTALLDAYSATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDYL 371 (392)
T ss_pred CcchhHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Confidence 999999999999999999875321 13679999999999999999999999999887643 345677888888877
Q ss_pred hcCCCChHhHHHhhccC
Q 040732 460 GLGGIYTSGAMALLSGL 476 (541)
Q Consensus 460 ~~~~~~~~~~~~ll~g~ 476 (541)
...+........-++|+
T Consensus 372 ~~~~~~~~~~~~~~~~~ 388 (392)
T PRK08243 372 TSSRAAATTLAENYVGL 388 (392)
T ss_pred hcCHHHHHHHHHhccCC
Confidence 65554444444445554
No 27
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=338.79 Aligned_cols=358 Identities=17% Similarity=0.194 Sum_probs=246.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
.||+||||||+|+++|+.|+++|++|+|+||.+.... ...+..+++++++.|+++|+++.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~------------------~g~~~~l~~~~~~~l~~lGl~~~l~ 62 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRT------------------GGYMVDFWGVGYEVAKRMGITDQLR 62 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccC------------------CCeEEeccCcHHHHHHHcCCHHHHH
Confidence 4899999999999999999999999999999865433 2334567889999999999998887
Q ss_pred hccceeeeeeEEEEC-CeeeeecCCCCCCC--CCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEE
Q 040732 147 EIDAHPVVGYALFKD-GKITKTPYPLGNFQ--ANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGV 222 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~-g~~~~~~~~~~~~~--~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV 222 (541)
.. ..+...+.++.. |... ..++..... .....+.++|.+|.+.|.+.+. +++++++++ |+++.++++ +|
T Consensus 63 ~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~--~~v~i~~~~~v~~i~~~~~---~v 135 (391)
T PRK07588 63 EA-GYQIEHVRSVDPTGRRK-ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID--GQVETIFDDSIATIDEHRD---GV 135 (391)
T ss_pred hc-cCCccceEEEcCCCCEE-EEecHHHccccCCCceEEEEHHHHHHHHHHhhh--cCeEEEeCCEEeEEEECCC---eE
Confidence 63 334455555543 3321 222211111 1112357999999999988654 279999997 899887666 45
Q ss_pred EEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEeec----CCCCCCe-eEEEEcCCCcEEEEEccC
Q 040732 223 HYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENC----QLPVPNH-GHVVLTDPSPILFYPISS 297 (541)
Q Consensus 223 ~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~----~~p~~~~-~~~~~~~~~~~~~~p~~~ 297 (541)
++.+++|+.. ++|+||+|||.+|.+|+.+...... ...+.+...... ..+.+.. ...+.+++.++.++|+++
T Consensus 136 ~v~~~~g~~~--~~d~vIgADG~~S~vR~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~ 212 (391)
T PRK07588 136 RVTFERGTPR--DFDLVIGADGLHSHVRRLVFGPERD-FEHYLGCKVAACVVDGYRPRDERTYVLYNEVGRQVARVALRG 212 (391)
T ss_pred EEEECCCCEE--EeCEEEECCCCCccchhhccCCccc-eEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCCEEEEEecCC
Confidence 5667788764 5999999999999999986432211 122333222211 1222222 233445667899999998
Q ss_pred CceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhc-CCeeeccCccccCCCCCCCcEEEecccCCC
Q 040732 298 SEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEK-GSIRTATNRSMPAAPKTTPGALLLGDAFNM 376 (541)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvliGDAah~ 376 (541)
++..+.+........+..+.++..+.+++.+... ++..... .+.+.. ..+...+....+..+|..+|++|+|||||.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~ 290 (391)
T PRK07588 213 DRTLFLFIFRAEHDNPPLTPAEEKQLLRDQFGDV-GWETPDI-LAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAAC 290 (391)
T ss_pred CCeEEEEEEEcCCccccCCHHHHHHHHHHHhccC-CccHHHH-HHhhhcccchheeeeeeeccCccccCCEEEEEccccC
Confidence 8776665554233333445556667777655432 2211111 122211 122222223335668899999999999999
Q ss_pred CCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 040732 377 RHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASV 456 (541)
Q Consensus 377 ~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~ 456 (541)
++|+.|||+|+||+||..|+++|.... .+...+|+.|++.|++++..++..++.+.++|+.+ ++....+|+..+
T Consensus 291 ~~P~~GqG~n~aieDa~~La~~L~~~~-----~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~~ 364 (391)
T PRK07588 291 PSLLGGEGSGLAITEAYVLAGELARAG-----GDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPK-TRFGLYVRNIAM 364 (391)
T ss_pred CCCccCCcHHHHHHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHHhhcccccccccCC-CHHHHHHHHHHH
Confidence 999999999999999999999997531 13578999999999999999999999999999765 566788999998
Q ss_pred HHhh
Q 040732 457 DYLG 460 (541)
Q Consensus 457 ~~~~ 460 (541)
..+.
T Consensus 365 ~~~~ 368 (391)
T PRK07588 365 KIMN 368 (391)
T ss_pred HHhc
Confidence 8776
No 28
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=335.77 Aligned_cols=351 Identities=18% Similarity=0.245 Sum_probs=246.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
+||+||||||+|+++|+.|+++|++|+|+||.+.... .+.|+.+++++++.|+.+|+.+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~------------------~g~gi~l~~~~~~~L~~~gl~~~~~ 62 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKE------------------VGAGIGIGDNVIKKLGNHDLAKGIK 62 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccc------------------cccceeeChHHHHHHHhcChHHHHH
Confidence 4799999999999999999999999999999986554 5667789999999999999998876
Q ss_pred hccceeeeeeEEEEC-CeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 147 EIDAHPVVGYALFKD-GKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
.. ..+..++.++.. |+.. ...+. .....++.++|..|.+.|.+.+. +.++++++ |+++..+++ +|++
T Consensus 63 ~~-~~~~~~~~~~~~~g~~~-~~~~~---~~~~~~~~i~R~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~---~v~v 131 (373)
T PRK06753 63 NA-GQILSTMNLLDDKGTLL-NKVKL---KSNTLNVTLHRQTLIDIIKSYVK---EDAIFTGKEVTKIENETD---KVTI 131 (373)
T ss_pred hc-CCcccceeEEcCCCCEE-eeccc---ccCCccccccHHHHHHHHHHhCC---CceEEECCEEEEEEecCC---cEEE
Confidence 53 335556666543 3321 11121 11234577999999999998764 45778876 999887665 3556
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEE--EeecCCCCCCeeEEEEcCCCcEEEEEccCCceEE
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMA--LENCQLPVPNHGHVVLTDPSPILFYPISSSEVRC 302 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~--~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~ 302 (541)
++++|++. ++|+||+|||.+|.+|+.++.........+..+. .....++.++....+++.+++++++|..+++.++
T Consensus 132 ~~~~g~~~--~~~~vigadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~ 209 (373)
T PRK06753 132 HFADGESE--AFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGIVPLLNNQAYW 209 (373)
T ss_pred EECCCCEE--ecCEEEECCCcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEEEEcCCCEEEEEEcCCCeEEE
Confidence 67778754 5999999999999999998753322111122221 1122223333444566777889999999998777
Q ss_pred EEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCc-cccCCCCCCCcEEEecccCCCCCCCC
Q 040732 303 LVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNR-SMPAAPKTTPGALLLGDAFNMRHPLT 381 (541)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vvliGDAah~~~P~~ 381 (541)
.+.+...+..+... ....+.+.+.+. .+++.+.+.+... ....+...+.. ..+..+|..+|++|+|||||.++|+.
T Consensus 210 ~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~ 286 (373)
T PRK06753 210 FITINAKERDPKYS-SFGKPHLQAYFN-HYPNEVREILDKQ-SETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNM 286 (373)
T ss_pred EEEeccccCCcccc-cccHHHHHHHHh-cCChHHHHHHHhC-CcccceeeccccccccccccCCCEEEEecccccCCCCc
Confidence 77654222111111 111223333332 3455555443222 22222222322 23456788999999999999999999
Q ss_pred CcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHh
Q 040732 382 GGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYL 459 (541)
Q Consensus 382 GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~ 459 (541)
|||+|+||+||..|+++|.. .++.++|+.|+++|++++..++..++.+.++++.+ .+....+|+.+++.+
T Consensus 287 GqG~n~ai~Da~~L~~~L~~-------~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~l~~~ 356 (373)
T PRK06753 287 GQGAGQAMEDAIVLANCLNA-------YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIE-SKLLVALRNRVMKRM 356 (373)
T ss_pred CccHHHHHHHHHHHHHHhhh-------ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcC-CchHHHHHHHHHHhC
Confidence 99999999999999999953 24578999999999999999999999999999765 455678899888765
No 29
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=334.88 Aligned_cols=360 Identities=21% Similarity=0.257 Sum_probs=248.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
.+..||+||||||+|+++|+.|+++|++|+|+||.+.... .+.|..+++++.+.|+++|+.+
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~------------------~g~g~~l~~~~~~~l~~~gl~~ 63 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV------------------YGAGITLQGNALRALRELGVLD 63 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc------------------CCceeeecHHHHHHHHHcCCHH
Confidence 3467999999999999999999999999999999876554 5667789999999999999998
Q ss_pred hHhhccceeeeeeEEEEC-CeeeeecCCCCCC--CCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeE
Q 040732 144 CVEEIDAHPVVGYALFKD-GKITKTPYPLGNF--QANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIV 219 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~-g~~~~~~~~~~~~--~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v 219 (541)
.+... ..+...+.++.. |+. ...++.... ........++|.++.+.|.+.+.+. +++++.++ |+++..+++.
T Consensus 64 ~~~~~-~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~- 139 (375)
T PRK06847 64 ECLEA-GFGFDGVDLFDPDGTL-LAELPTPRLAGDDLPGGGGIMRPALARILADAARAA-GADVRLGTTVTAIEQDDDG- 139 (375)
T ss_pred HHHHh-CCCccceEEECCCCCE-EEecCcccccccCCCCcccCcHHHHHHHHHHHHHHh-CCEEEeCCEEEEEEEcCCE-
Confidence 77653 234445555542 322 122221111 0112235688999999999999876 88999986 8888766653
Q ss_pred EEEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEeecCCC---CCCeeEEEEcCCCcEEEEEcc
Q 040732 220 KGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENCQLP---VPNHGHVVLTDPSPILFYPIS 296 (541)
Q Consensus 220 ~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~~~p---~~~~~~~~~~~~~~~~~~p~~ 296 (541)
+.+.+++|++ +.+|+||+|||.+|.+|+.+..... ...+.+...+...++ .......+.++++.+.++|.+
T Consensus 140 --~~v~~~~g~~--~~ad~vI~AdG~~s~~r~~l~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 213 (375)
T PRK06847 140 --VTVTFSDGTT--GRYDLVVGADGLYSKVRSLVFPDEP--EPEYTGQGVWRAVLPRPAEVDRSLMYLGPTTKAGVVPLS 213 (375)
T ss_pred --EEEEEcCCCE--EEcCEEEECcCCCcchhhHhcCCCC--CceeccceEEEEEecCCCCccceEEEeCCCcEEEEEcCC
Confidence 4455677775 4599999999999999998733211 122233222211111 122345677777889999999
Q ss_pred CCceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhh-cCCeeeccCccc-cCCCCCCCcEEEecccC
Q 040732 297 SSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVE-KGSIRTATNRSM-PAAPKTTPGALLLGDAF 374 (541)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~vvliGDAa 374 (541)
++..++++..+ .......+.++..+.+++.+....++.+. .+.+.+. ...+...+.... ...+|..+|++|+||||
T Consensus 214 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAa 291 (375)
T PRK06847 214 EDLMYLFVTEP-RPDNPRIEPDTLAALLRELLAPFGGPVLQ-ELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAA 291 (375)
T ss_pred CCeEEEEEecc-CcccccCChHHHHHHHHHHHhhcCchHHH-HHHHhcCCccceeeccHhhccCCCCccCCeEEEEechh
Confidence 88776665544 22222333445556666544433222222 2222222 223344454443 24578999999999999
Q ss_pred CCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChH--HHHHHH
Q 040732 375 NMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDE--AREVMR 452 (541)
Q Consensus 375 h~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~--~~~~lr 452 (541)
|.++|++|||+|+||+||..|+++|... ..+.++|+.|+++|+++++.++..++.+...+...... ....+|
T Consensus 292 H~~~P~~GqG~n~aieDA~~La~~L~~~------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 365 (375)
T PRK06847 292 HATTPHLAQGAGMAIEDAIVLAEELARH------DSLEAALQAYYARRWERCRMVVEASARIGRIEIEGGDKAEHAGLMR 365 (375)
T ss_pred ccCCCCccccHHHHHHHHHHHHHHHhhC------CcHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCccchHHHHH
Confidence 9999999999999999999999999752 34678999999999999999999999999887644321 345778
Q ss_pred HHHHHHh
Q 040732 453 QASVDYL 459 (541)
Q Consensus 453 ~~~~~~~ 459 (541)
+.++.++
T Consensus 366 ~~~~~~~ 372 (375)
T PRK06847 366 ESMELLA 372 (375)
T ss_pred HHHHHhc
Confidence 8777665
No 30
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=337.54 Aligned_cols=369 Identities=18% Similarity=0.215 Sum_probs=252.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
..+||+||||||+|+++|+.|++.|++|+|+||.+.......+. ....+.+++++.+.|+.+|+++.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-------------~~r~~~l~~~~~~~l~~~g~~~~ 70 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAW-------------DSRVYAISPSSQAFLERLGVWQA 70 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCC-------------CCceEeecHHHHHHHHHcCchhh
Confidence 46899999999999999999999999999999987543311110 11235689999999999999988
Q ss_pred HhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEEEE
Q 040732 145 VEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGVHY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV~v 224 (541)
+......+...+.++.+.. ..+.+.......+...+.+++..+.+.|.+.+++.++++++..+|+++..+++. +.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~---~~v 146 (388)
T PRK07608 71 LDAARLAPVYDMRVFGDAH-ARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDA---ATL 146 (388)
T ss_pred hhhhcCCcceEEEEEECCC-ceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCe---EEE
Confidence 7543344555555554321 112211111112233567899999999999998886698884458888766653 445
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCCceEEE
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSSEVRCL 303 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 303 (541)
++++|++ ++||+||+|||.+|.+|+.++.+....+....++... ....+..+..+.++.++++++++|++++.+.+.
T Consensus 147 ~~~~g~~--~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 224 (388)
T PRK07608 147 TLADGQV--LRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMV 224 (388)
T ss_pred EECCCCE--EEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEE
Confidence 5667754 5699999999999999999987654444333444332 223333344566778888999999999987766
Q ss_pred EEecCCC--CCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCCC
Q 040732 304 VDVPAGQ--KLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLT 381 (541)
Q Consensus 304 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~~ 381 (541)
+..+... .....+.+++.+.+++.... .+...........+|......+.|..+|++++|||||.++|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~ 296 (388)
T PRK07608 225 WSARTAHADELLALSPEALAARVERASGG--------RLGRLECVTPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLA 296 (388)
T ss_pred EECCHHHHHHHHCCCHHHHHHHHHHHHHH--------hcCCceecCCcceeecchhhhhhhhcCceEEEeccccccCCcc
Confidence 5543111 00111233444444332211 0000000112233555555667889999999999999999999
Q ss_pred CcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHhhc
Q 040732 382 GGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVDYLGL 461 (541)
Q Consensus 382 GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~~~~~ 461 (541)
|||+|+||+||.+|+++|.......+. ....+|++|+++|+++...++..++.+.++|..+ ++....+|+..+..+..
T Consensus 297 GqG~n~ai~da~~La~~L~~~~~~~~~-~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~ 374 (388)
T PRK07608 297 GQGMNLGLRDVAALADVLAGREPFRDL-GDLRLLRRYERARREDILALQVATDGLQRLFALP-GPLARWLRNAGMALVGA 374 (388)
T ss_pred ccccchhHHHHHHHHHHHHHhhccCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhh
Confidence 999999999999999999764211111 1247999999999999999999999999999866 45667889998877654
Q ss_pred C
Q 040732 462 G 462 (541)
Q Consensus 462 ~ 462 (541)
-
T Consensus 375 ~ 375 (388)
T PRK07608 375 L 375 (388)
T ss_pred C
Confidence 3
No 31
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=8.9e-40 Score=340.35 Aligned_cols=383 Identities=19% Similarity=0.197 Sum_probs=255.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC---CCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCc
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTD---GRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGL 141 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~---G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl 141 (541)
..+||+||||||+|+++|+.|+|+ |++|+|+||...... .+... ..++..+++++.+.|+++|+
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~--~~~~~-----------~~~~~~l~~~~~~~l~~lgl 68 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESD--AHPGF-----------DARAIALAAGTCQQLARLGV 68 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccc--cCCCC-----------CccceeccHHHHHHHHHCCC
Confidence 568999999999999999999998 999999999632211 00000 34567899999999999999
Q ss_pred hhhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEE
Q 040732 142 DDCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVK 220 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~ 220 (541)
++.+... ..+...+.+...+......+..........++.++|..+.+.|.+.+.+.+++++++++ |+++..+++.
T Consensus 69 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-- 145 (395)
T PRK05732 69 WQALADC-ATPITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS-- 145 (395)
T ss_pred hhhhHhh-cCCccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--
Confidence 9888763 23344444433322211111111122223357789999999999998887789999876 8888776653
Q ss_pred EEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEccCCc
Q 040732 221 GVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPISSSE 299 (541)
Q Consensus 221 gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~~~~~ 299 (541)
+.+++++|.. +.+|+||+|||.+|.+|+.++.+..........+... ....+........+.++++++++|.++++
T Consensus 146 -~~v~~~~g~~--~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~g~ 222 (395)
T PRK05732 146 -VRVTLDDGET--LTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLALLPMSDGR 222 (395)
T ss_pred -EEEEECCCCE--EEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEEEeECCCCC
Confidence 4455667754 5699999999999999999876543333222222221 11111222222345567789999999998
Q ss_pred eEEEEEecCCCC--CCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCC
Q 040732 300 VRCLVDVPAGQK--LPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMR 377 (541)
Q Consensus 300 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~ 377 (541)
.++++.++.... ...++.++..+.+.+.+. .. +...........+++....+.+|..+|++|+|||||.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~ 294 (395)
T PRK05732 223 CSLVWCHPLEDAEEVLSWSDAQFLAELQQAFG----WR----LGRITHAGKRSAYPLALVTAAQQISHRLALVGNAAQTL 294 (395)
T ss_pred eEEEEECCHHHHHHHHcCCHHHHHHHHHHHHH----hh----hcceeecCCcceecccccchhhhccCcEEEEeeccccc
Confidence 877766552110 112223333333333211 00 00111122334556665667788899999999999999
Q ss_pred CCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 040732 378 HPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQASVD 457 (541)
Q Consensus 378 ~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~~~ 457 (541)
+|++|||+|+||+||.+|+++|..............+|+.|+++|+++...+...++.+.++|..+ .+....+|+..+.
T Consensus 295 ~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~ 373 (395)
T PRK05732 295 HPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANR-WAPLVVGRNLGLM 373 (395)
T ss_pred CCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 999999999999999999999965321111112247899999999999999999999999999865 3566888999988
Q ss_pred HhhcCCCChHhHHHhhcc
Q 040732 458 YLGLGGIYTSGAMALLSG 475 (541)
Q Consensus 458 ~~~~~~~~~~~~~~ll~g 475 (541)
.+..-+...+..+...+|
T Consensus 374 ~~~~~~~~~~~~~~~~~~ 391 (395)
T PRK05732 374 AMDLLPPARDWLARRTLG 391 (395)
T ss_pred HHccCHHHHHHHHHHHhc
Confidence 877655555544444444
No 32
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=338.58 Aligned_cols=361 Identities=15% Similarity=0.178 Sum_probs=251.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCC----CcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDG----RRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVEL 139 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G----~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~l 139 (541)
...+||+||||||+|+++|+.|+++| ++|+|+|+.+..... . ...++.+++++.+.|+++
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~--~--------------~~r~~~l~~~~~~~L~~l 72 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASA--N--------------DPRAIALSHGSRVLLETL 72 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCC--C--------------CceEEEecHHHHHHHHhC
Confidence 35689999999999999999999987 479999997532210 0 234667999999999999
Q ss_pred CchhhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCe
Q 040732 140 GLDDCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGI 218 (541)
Q Consensus 140 gl~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~ 218 (541)
|+++.. ..+...+.++..+......+.......+..++.++|..|.+.|.+.+.+. +++++.++ ++++.++++
T Consensus 73 g~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~-g~~~~~~~~v~~~~~~~~- 146 (398)
T PRK06996 73 GAWPAD----ATPIEHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGT-PVRWLTSTTAHAPAQDAD- 146 (398)
T ss_pred CCchhc----CCcccEEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhC-CCEEEcCCeeeeeeecCC-
Confidence 998752 23444455554333222223223333344578999999999999999887 68888886 888866555
Q ss_pred EEEEEEEcCCCc-EEEEEcCEEEEecCC-CCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEcCCCcEEEEEc
Q 040732 219 VKGVHYKTKDGQ-EHKSYAPLTIVCDGG-FSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLTDPSPILFYPI 295 (541)
Q Consensus 219 v~gV~v~~~~g~-~~~v~a~lvV~AdG~-~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~p~ 295 (541)
+|++...+|+ ..+++||+||+|||. +|.+|+.++.+.....+...+++.. ....+++...+..+.+.+++.++|.
T Consensus 147 --~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~~~lp~ 224 (398)
T PRK06996 147 --GVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERFTHEGPLALLPL 224 (398)
T ss_pred --eEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEecCCCCeEEeEC
Confidence 3455555331 134779999999997 5788988877655555555555442 2233444445556677889999999
Q ss_pred cCCc---eEEEEEecCCCC---CCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEE
Q 040732 296 SSSE---VRCLVDVPAGQK---LPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALL 369 (541)
Q Consensus 296 ~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvl 369 (541)
.++. .++++..+ .+. ...++.++..+.+.+.+...+++ + ........++.....+.+|..+||+|
T Consensus 225 ~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-------~~~~~~~~~~l~~~~~~~~~~grv~L 295 (398)
T PRK06996 225 GGPRQADYALVWCCA-PDEAARRAALPDDAFLAELGAAFGTRMGR-F-------TRIAGRHAFPLGLNAARTLVNGRIAA 295 (398)
T ss_pred CCCCCCcEEEEEECC-HHHHHHHHcCCHHHHHHHHHHHhccccCc-e-------EEecceEEEeeecccccceecCCEEE
Confidence 8764 44444443 111 11223334444444433221111 0 01122335677777778999999999
Q ss_pred ecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHH
Q 040732 370 LGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEARE 449 (541)
Q Consensus 370 iGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~ 449 (541)
+|||||.++|+.|||+|+||+||.+|+++|... + ....+|++|+++|++++..++..++.+.++|+.+ .+...
T Consensus 296 iGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~---~---~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~-~~~~~ 368 (398)
T PRK06996 296 VGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH---G---ATPLALATFAARRALDRRVTIGATDLLPRLFTVD-SRPLA 368 (398)
T ss_pred EEhhhccCCcccchhHHHHHHHHHHHHHHHHhc---C---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHH
Confidence 999999999999999999999999999999652 1 1346799999999999999999999999999866 45678
Q ss_pred HHHHHHHHHhhcCCC
Q 040732 450 VMRQASVDYLGLGGI 464 (541)
Q Consensus 450 ~lr~~~~~~~~~~~~ 464 (541)
.+|+..+..+..-..
T Consensus 369 ~~R~~~l~~~~~~~~ 383 (398)
T PRK06996 369 HLRGAALTALEFVPP 383 (398)
T ss_pred HHHhHHHHHHhhCHH
Confidence 899988877665443
No 33
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-38 Score=343.62 Aligned_cols=360 Identities=17% Similarity=0.128 Sum_probs=240.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
+..+||+||||||+|+++|+.|+++|++|+||||.+.... ...+..+++++++.|+++|+.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~------------------~~ra~~l~~~~~~~l~~lGl~~ 82 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLST------------------GSRAICFAKRSLEIFDRLGCGE 82 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCC------------------CCeEEEEcHHHHHHHHHcCCcH
Confidence 4668999999999999999999999999999999975433 3344578999999999999998
Q ss_pred hHhhccceeeeeeEEEECC-eeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEE
Q 040732 144 CVEEIDAHPVVGYALFKDG-KITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKG 221 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~g 221 (541)
.+..... .......+..+ ......+.............+++..+++.|.+.+.+.++++++.++ ++++..+++.+.
T Consensus 83 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~- 160 (547)
T PRK08132 83 RMVDKGV-SWNVGKVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT- 160 (547)
T ss_pred HHHhhCc-eeeceeEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE-
Confidence 8765432 22222233322 2212221111111111234578889999999999888889999887 888887766432
Q ss_pred EEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEc----CCCcEEEEEcc
Q 040732 222 VHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLT----DPSPILFYPIS 296 (541)
Q Consensus 222 V~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~----~~~~~~~~p~~ 296 (541)
+++.+.+|+ .+++||+||+|||.+|.+|+.++.+..........++.. ....+.+.....++. ++..+++.|..
T Consensus 161 v~~~~~~g~-~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (547)
T PRK08132 161 LTVETPDGP-YTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFDPPFHPGQSVLLHRQP 239 (547)
T ss_pred EEEECCCCc-EEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEeccCCCCcEEEEEeCC
Confidence 455555554 347799999999999999999988665544333333321 122222233344443 23445666776
Q ss_pred CCceEEEEEecCCCC-CCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCC
Q 040732 297 SSEVRCLVDVPAGQK-LPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFN 375 (541)
Q Consensus 297 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah 375 (541)
++.+++.+....... ....+.++..+.+++.+.+..+ .+......++.....+.+|..|||+|+|||||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH 309 (547)
T PRK08132 240 DNVWRIDFQLGWDADPEAEKKPENVIPRVRALLGEDVP----------FELEWVSVYTFQCRRMDRFRHGRVLFAGDAAH 309 (547)
T ss_pred CCeEEEEEecCCCCCchhhcCHHHHHHHHHHHcCCCCC----------eeEEEEEeeeeeeeeecccccccEEEEecccc
Confidence 666665544331111 1112233333344433221000 00012234555666788999999999999999
Q ss_pred CCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 040732 376 MRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQAS 455 (541)
Q Consensus 376 ~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~~~ 455 (541)
.++|+.|||||+||+||.+|+|+|+.+.. +.....+|++|+++|+|+++.+...+..+..++... ++....+|+..
T Consensus 310 ~~~P~~GqG~n~gi~DA~~LawkLa~vl~---g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~ 385 (547)
T PRK08132 310 QVSPFGARGANSGIQDADNLAWKLALVLR---GRAPDSLLDSYASEREFAADENIRNSTRSTDFITPK-SPVSRLFRDAV 385 (547)
T ss_pred cCCCcccccccchHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CHHHHHHHHHH
Confidence 99999999999999999999999987532 123467999999999999999999999888887654 35556677766
Q ss_pred HHH
Q 040732 456 VDY 458 (541)
Q Consensus 456 ~~~ 458 (541)
+..
T Consensus 386 ~~~ 388 (547)
T PRK08132 386 LRL 388 (547)
T ss_pred Hhh
Confidence 554
No 34
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=3.2e-38 Score=328.68 Aligned_cols=355 Identities=19% Similarity=0.231 Sum_probs=239.2
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
.+|+||||||+|+++|+.|+++|++|+|+||.+...+ .+.+..+++++++.|+++|+++.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~------------------~g~gi~l~~~~~~~L~~~Gl~~~l~ 64 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSE------------------VGAGLQLAPNAMRHLERLGVADRLS 64 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc------------------CCccceeChhHHHHHHHCCChHHHh
Confidence 5899999999999999999999999999999876555 5677889999999999999999887
Q ss_pred hccceeeeeeEEEECCeeee--ecCCCCC---CCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEE
Q 040732 147 EIDAHPVVGYALFKDGKITK--TPYPLGN---FQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVK 220 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~~~--~~~~~~~---~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~ 220 (541)
...... ..+.+. ++.... ....... .........++|.+|.+.|.+.+.+.+++++++++ |+++..+++.+
T Consensus 65 ~~~~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v- 141 (400)
T PRK06475 65 GTGVTP-KALYLM-DGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSI- 141 (400)
T ss_pred hcccCc-ceEEEe-cCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCce-
Confidence 643322 223322 222111 1111100 00111224689999999999999877789999987 88887765543
Q ss_pred EEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEE--EeecCC--------CCCCeeEEEEcCCCcE
Q 040732 221 GVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMA--LENCQL--------PVPNHGHVVLTDPSPI 290 (541)
Q Consensus 221 gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~--~~~~~~--------p~~~~~~~~~~~~~~~ 290 (541)
.+++...++.+ +++||+||+|||.+|.+|+.++.+.... ..+..+. .....+ ++.+....|+++++++
T Consensus 142 ~v~~~~~~~~~-~~~adlvIgADG~~S~vR~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (400)
T PRK06475 142 TATIIRTNSVE-TVSAAYLIACDGVWSMLRAKAGFSKARF-SGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHF 219 (400)
T ss_pred EEEEEeCCCCc-EEecCEEEECCCccHhHHhhcCCCCCCc-CCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEE
Confidence 24443333332 3569999999999999999986532221 1122211 111111 2233346678888999
Q ss_pred EEEEccCCceEEEEEecCCC-CCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCC-CCCcEE
Q 040732 291 LFYPISSSEVRCLVDVPAGQ-KLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPK-TTPGAL 368 (541)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vv 368 (541)
++||+++++..+++.+.... ....+......+.+.+.+ ..+++.+.+.+... .....+|+....+.+| ..+|++
T Consensus 220 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~i~~~---~~~~~~~l~~~~~~~~~~~grvv 295 (400)
T PRK06475 220 IAYPVKGGKFFNFVAITGGENPGEVWSKTGDKAHLKSIY-ADWNKPVLQILAAI---DEWTYWPLFEMADAQFVGPDRTI 295 (400)
T ss_pred EEEEccCCcEEEEEEEEcCCCCcccCCCCCCHHHHHHHh-cCCChHHHHHHhcC---CceeECcCcccCCCcceecCCEE
Confidence 99999988766555433121 112222222234455443 34555555543322 2445677776665555 468999
Q ss_pred EecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHH
Q 040732 369 LLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAR 448 (541)
Q Consensus 369 liGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~ 448 (541)
|||||||.++|+.|||+|+||+||..|+++|... ++..+|+.|++.|+++++.++..++ +...+....++ .
T Consensus 296 LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~-------~~~~aL~~Ye~~R~~r~~~~~~~s~-~~~~~~~~~~~-~ 366 (400)
T PRK06475 296 FLGDASHAVTPFAAQGAAMAIEDAAALAEALDSD-------DQSAGLKRFDSVRKERIAAVAKRGQ-LNRFAYHATGI-F 366 (400)
T ss_pred EEecccccCCchhhhhHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCH-H
Confidence 9999999999999999999999999999999631 3568999999999999999999887 44444333333 4
Q ss_pred HHHHHHHHH
Q 040732 449 EVMRQASVD 457 (541)
Q Consensus 449 ~~lr~~~~~ 457 (541)
...|+..+.
T Consensus 367 ~~~r~~~~~ 375 (400)
T PRK06475 367 ALGRNMLFA 375 (400)
T ss_pred HHHHHHHHh
Confidence 566776654
No 35
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=2.8e-38 Score=327.31 Aligned_cols=365 Identities=18% Similarity=0.198 Sum_probs=237.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.+||+||||||+|+++|+.|+++|++|+|+||.+..... + ......+.+++++.|+++|+++.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~--~--------------~~~a~~l~~~~~~~L~~lGl~~~l 65 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVL--G--------------RIRAGVLEQGTVDLLREAGVDERM 65 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccC--C--------------ceeEeeECHHHHHHHHHCCChHHH
Confidence 479999999999999999999999999999998742110 0 222334889999999999999988
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
... ..+..++.++.++......++.. ..........+..+.+.|.+.+.+. ++.++++. ++.+.+.++...+|++
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~~v~~~~~~~~~~~V~~ 141 (390)
T TIGR02360 66 DRE-GLVHEGTEIAFDGQRFRIDLKAL--TGGKTVMVYGQTEVTRDLMEAREAA-GLTTVYDADDVRLHDLAGDRPYVTF 141 (390)
T ss_pred Hhc-CceecceEEeeCCEEEEEecccc--CCCceEEEeCHHHHHHHHHHHHHhc-CCeEEEeeeeEEEEecCCCccEEEE
Confidence 764 34555666665554333444321 1111112345677888898888776 66676665 6666553332234555
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccce--EEEEEeecCCCCCCeeEEEEcCCCcEEEEEccCC-ceE
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCF--VGMALENCQLPVPNHGHVVLTDPSPILFYPISSS-EVR 301 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~--~g~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~-~~~ 301 (541)
. .+|+..+++||+||+|||.+|.+|++++.........+ .++.......+.......+.+.+..+.++|..++ ..+
T Consensus 142 ~-~~g~~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (390)
T TIGR02360 142 E-RDGERHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPVSHELIYSNHERGFALCSMRSATRSR 220 (390)
T ss_pred E-ECCeEEEEEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCCCCceEEEeCCCceEEEeccCCCcce
Confidence 3 36765567899999999999999999865322110111 1111111111212222344556666777787643 334
Q ss_pred EEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCCC
Q 040732 302 CLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLT 381 (541)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~~ 381 (541)
+++..+..+..+.+..+...+.+++.+. +.+.+.+... ........|.......+|..||++|+|||||.++|+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~ 295 (390)
T TIGR02360 221 YYVQVPLTDKVEDWSDDRFWAELKRRLP----SEAAERLVTG-PSIEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTG 295 (390)
T ss_pred EEEEcCCCCChhhCChhHHHHHHHHhcC----chhhhhhccC-CccceeeeeHHhhccccCccCCEEEEEccccCCCCCc
Confidence 5555542222334444445555544332 2222222111 1111233355555567888999999999999999999
Q ss_pred CcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCCh--HHHHHHHHHHHHHh
Q 040732 382 GGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSD--EAREVMRQASVDYL 459 (541)
Q Consensus 382 GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~--~~~~~lr~~~~~~~ 459 (541)
|||+|+||+||.+|+++|..... ++..++|+.|++.|++++..++..|+.+..+++..++ +....+++++++++
T Consensus 296 GQG~n~aieDA~~La~~L~~~~~----~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
T TIGR02360 296 AKGLNLAASDVHYLYEALLEHYQ----EGSSAGIEGYSARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQAELEYL 371 (390)
T ss_pred CCchhHHHHHHHHHHHHHHHHhc----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999976421 2356799999999999999999999999988765443 44566777887766
Q ss_pred h
Q 040732 460 G 460 (541)
Q Consensus 460 ~ 460 (541)
-
T Consensus 372 ~ 372 (390)
T TIGR02360 372 L 372 (390)
T ss_pred h
Confidence 4
No 36
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=340.03 Aligned_cols=342 Identities=18% Similarity=0.189 Sum_probs=236.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
+.+||+||||||+|+++|+.|+++|++|+||||.+.+.. ...+..+++++++.|+++|+.+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~------------------~~ra~~l~~~~~e~l~~lGl~~~ 63 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFP------------------GSRGKGIQPRTQEVFDDLGVLDR 63 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCc------------------CccceeecHHHHHHHHHcCcHHH
Confidence 468999999999999999999999999999999876544 45567789999999999999988
Q ss_pred HhhccceeeeeeEEEECCe-eeeecCCC--CC--CCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCe
Q 040732 145 VEEIDAHPVVGYALFKDGK-ITKTPYPL--GN--FQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGI 218 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~-~~~~~~~~--~~--~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~ 218 (541)
+.... .+...+.++..+. .....+.. .. .......+.++|..+++.|++.+.+. +++++.++ ++++.++++.
T Consensus 64 l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~i~~~~~~ 141 (502)
T PRK06184 64 VVAAG-GLYPPMRIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAEL-GHRVEFGCELVGFEQDADG 141 (502)
T ss_pred HHhcC-ccccceeEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHC-CCEEEeCcEEEEEEEcCCc
Confidence 87643 3333444444322 21111110 00 01112346788999999999999887 79999996 9999877664
Q ss_pred EEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccce-EEEEEe-ecCCCCCCeeEEEEcCC-CcEEEEEc
Q 040732 219 VKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCF-VGMALE-NCQLPVPNHGHVVLTDP-SPILFYPI 295 (541)
Q Consensus 219 v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~-~g~~~~-~~~~p~~~~~~~~~~~~-~~~~~~p~ 295 (541)
+. +++...++. .+++||+||+|||.+|.+|++++++........ ..++.. ......+...+.+..+. +++.++|+
T Consensus 142 v~-v~~~~~~~~-~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 219 (502)
T PRK06184 142 VT-ARVAGPAGE-ETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQWPDGDMGMIALCPL 219 (502)
T ss_pred EE-EEEEeCCCe-EEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCcceEEccCCCCcEEEEEEc
Confidence 32 333332222 357799999999999999999988665544332 333322 11111223334444444 78889999
Q ss_pred cCCc-eEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccC
Q 040732 296 SSSE-VRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAF 374 (541)
Q Consensus 296 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAa 374 (541)
.++. +++.+..+ ....+..+.+++.+.+++..... .+. .........++.....+.+|..|||+|+||||
T Consensus 220 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~---~~~-----~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAA 290 (502)
T PRK06184 220 PGTDLFQIQAPLP-PGGEPDLSADGLTALLAERTGRT---DIR-----LHSVTWASAFRMNARLADRYRVGRVFLAGDAA 290 (502)
T ss_pred cCCCeEEEEEEcC-CCccCCCCHHHHHHHHHHhcCCC---Ccc-----eeeeeeeeccccceeEhhhhcCCcEEEecccc
Confidence 7654 44444443 22223345556666666543311 110 00111233455555567789999999999999
Q ss_pred CCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhc
Q 040732 375 NMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFS 441 (541)
Q Consensus 375 h~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~ 441 (541)
|.++|+.|||||+||+||.+|+|+|+.+... +.+.+|++|+.+|++++..++..+..+++.+.
T Consensus 291 H~~~P~~GqG~n~gi~DA~~LawkLa~vl~g----~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~ 353 (502)
T PRK06184 291 HVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG----APEALLDTYEEERRPVAAAVLGLSTELLDAIK 353 (502)
T ss_pred ccCCCcccccccchHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999875321 23679999999999999999999999888775
No 37
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=335.37 Aligned_cols=337 Identities=15% Similarity=0.138 Sum_probs=241.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
..+||+||||||+|+++|+.|+++|++|+||||.+.+.. .+.+..+++++++.|+.+|+++.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~------------------~gra~~l~~~tle~L~~lGl~~~ 65 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLE------------------VGRADALNARTLQLLELVDLFDE 65 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccc------------------cccceEeCHHHHHHHHhcChHHH
Confidence 458999999999999999999999999999999975543 34455789999999999999988
Q ss_pred HhhccceeeeeeEEEECCeeeeecCC-CCCC--CCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEE
Q 040732 145 VEEIDAHPVVGYALFKDGKITKTPYP-LGNF--QANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVK 220 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~~~~~~-~~~~--~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~ 220 (541)
+... ..+.....++.+++....... .... ........+++..+++.|.+.+.+. |++++.++ |+++..+++.
T Consensus 66 l~~~-~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~-Gv~v~~~~~v~~l~~~~~~-- 141 (487)
T PRK07190 66 LYPL-GKPCNTSSVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEA-GAAVKRNTSVVNIELNQAG-- 141 (487)
T ss_pred HHhh-CccceeEEEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCe--
Confidence 7653 234444445554433211110 0000 1112235678889999999999887 89999997 9999887663
Q ss_pred EEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe---ecCCCCCCeeEEEEcCCCcEEEEEccC
Q 040732 221 GVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE---NCQLPVPNHGHVVLTDPSPILFYPISS 297 (541)
Q Consensus 221 gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~---~~~~p~~~~~~~~~~~~~~~~~~p~~~ 297 (541)
|.+...+|+ +++|++||+|||.+|.+|++++++.........+.+.. ....|+......+..+.+.++++|.++
T Consensus 142 -v~v~~~~g~--~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~ 218 (487)
T PRK07190 142 -CLTTLSNGE--RIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREG 218 (487)
T ss_pred -eEEEECCCc--EEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCC
Confidence 444445665 46799999999999999999998766544433333331 223343222333556678899999988
Q ss_pred CceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCC-CCcEEEecccCCC
Q 040732 298 SEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKT-TPGALLLGDAFNM 376 (541)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vvliGDAah~ 376 (541)
+..++++... .+..+.++..+.+++.+.+.. +. ..+...+..|+...+.+.+|+ .|||+|+|||||.
T Consensus 219 ~~~r~~~~~~----~~~~t~~~~~~~l~~~~~~~~---~~-----~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~ 286 (487)
T PRK07190 219 EIDRFYVRMD----TKDFTLEQAIAKINHAMQPHR---LG-----FKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHI 286 (487)
T ss_pred CEEEEEEEcC----CCCCCHHHHHHHHHHhcCCCC---Cc-----eEEEEEEEEeeeCcEehhhcCcCCcEEEEeccccc
Confidence 7666554422 233455666666655443221 10 111234567888888899997 7999999999999
Q ss_pred CCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhc
Q 040732 377 RHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFS 441 (541)
Q Consensus 377 ~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~ 441 (541)
++|.+|||||++|+||.+|+|+|+.+... ...+..|++|+.+|+|.+..+...++.+.++..
T Consensus 287 h~P~gGQGmN~giqDA~nL~wkLa~v~~g---~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~~ 348 (487)
T PRK07190 287 HSVNGGQGLNTGLADAFNLIWKLNMVIHH---GASPELLQSYEAERKPVAQGVIETSGELVRSTK 348 (487)
T ss_pred CCCccccchhhhHHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999865321 123679999999999999999999998877653
No 38
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-38 Score=342.42 Aligned_cols=364 Identities=20% Similarity=0.221 Sum_probs=244.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
+..+||+||||||+|+++|+.|+++|++|+|+||.+.... ...+..+++++++.|+++|+.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~------------------~~ra~~l~~r~~e~L~~lGl~~ 66 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAF------------------NPKANTTSARSMEHFRRLGIAD 66 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC------------------CCccccCCHHHHHHHHhcChHH
Confidence 4568999999999999999999999999999999875443 4455679999999999999999
Q ss_pred hHhhcccee--eeeeEEE--ECCeee-eecCCCCC------------CCCCccceeecchHHHHHHHHHHHcCCCeEEEe
Q 040732 144 CVEEIDAHP--VVGYALF--KDGKIT-KTPYPLGN------------FQANVAGRSFHNGRFIQRMREKAASLPNVRMEE 206 (541)
Q Consensus 144 ~~~~~~~~~--~~g~~~~--~~g~~~-~~~~~~~~------------~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~ 206 (541)
.+.+..... .....+. ..|+.. ...++... .......+.++|..+++.|.+.+.+.+++++++
T Consensus 67 ~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~ 146 (545)
T PRK06126 67 EVRSAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRY 146 (545)
T ss_pred HHHhhcCCccccCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEe
Confidence 887643211 0111111 123211 11211100 011223467888999999999998878999999
Q ss_pred Ce-EEEeeeeCCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcccccccCCCcccccc--eEEEEEeecCC----CCC-
Q 040732 207 GT-VTSLFEENGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSC--FVGMALENCQL----PVP- 277 (541)
Q Consensus 207 ~~-v~~l~~~~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~--~~g~~~~~~~~----p~~- 277 (541)
++ |+++..+++.+. +++.+ .+|+..++++|+||+|||.+|.+|+.++.+....... .....+....+ +..
T Consensus 147 ~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 225 (545)
T PRK06126 147 GHRLTDFEQDADGVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDP 225 (545)
T ss_pred ccEEEEEEECCCeEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCC
Confidence 97 999988776554 55544 4576667889999999999999999998765433321 12222221111 111
Q ss_pred CeeEEEEcCCCcEEEEEccCCceEEEEE-ecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCcc
Q 040732 278 NHGHVVLTDPSPILFYPISSSEVRCLVD-VPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRS 356 (541)
Q Consensus 278 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 356 (541)
...++++.++....+++..++.. |.+. ++........+.++..+.+++.+...++.++ .....|....
T Consensus 226 ~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~~~~w~~~~ 294 (545)
T PRK06126 226 AWMYWLFNPDRRGVLVAIDGRDE-WLFHQLRGGEDEFTIDDVDARAFVRRGVGEDIDYEV----------LSVVPWTGRR 294 (545)
T ss_pred ceEEEEECCCccEEEEEECCCCe-EEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCeEE----------Eeecccchhh
Confidence 22344455666667777765543 3333 3322222334455666666665442222111 1222345556
Q ss_pred ccCCCCCCCcEEEecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHH
Q 040732 357 MPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSA 436 (541)
Q Consensus 357 ~~~~~~~~~~vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l 436 (541)
..+.+|..|||+|+|||||.++|+.|||||+||+||.+|+|+|+.+.. ..+.+.+|++|+++|+|++..++..+...
T Consensus 295 ~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~---~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~ 371 (545)
T PRK06126 295 LVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLN---GWAGPALLDSYEAERRPIAARNTDYARRN 371 (545)
T ss_pred eehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHc---CCCcHHHHhhhHHHhhHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999987532 12236799999999999999999999988
Q ss_pred HhhhcCC--------ChHHHHHHHHHHHHHhh
Q 040732 437 YQVFSAS--------SDEAREVMRQASVDYLG 460 (541)
Q Consensus 437 ~~~~~~~--------~~~~~~~lr~~~~~~~~ 460 (541)
...+... +++....+|+.+.+++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 403 (545)
T PRK06126 372 ADALGSFPVPPEIEDDGPAGDAARRKVGDALS 403 (545)
T ss_pred HHHhcccccchhhccCChhHHHHHHHHHHHHh
Confidence 7765422 12333456666655543
No 39
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=3.2e-39 Score=330.65 Aligned_cols=337 Identities=22% Similarity=0.273 Sum_probs=219.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
++||+||||||+|+++|+.|+|+|++|+||||.+.+.. ...|+.+++++++.|+.+|+++.+
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~------------------~~~~~~l~~~~~~~l~~lgl~~~~ 62 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRP------------------KGRGIGLSPNSLRILQRLGLLDEI 62 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCC------------------SSSSEEEEHHHHHHHHHTTEHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccc------------------cccccccccccccccccccchhhh
Confidence 37999999999999999999999999999999987666 667788999999999999999988
Q ss_pred hhcccee-eeeeEEEEC--Ce-------eeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeee
Q 040732 146 EEIDAHP-VVGYALFKD--GK-------ITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFE 214 (541)
Q Consensus 146 ~~~~~~~-~~g~~~~~~--g~-------~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~ 214 (541)
....... .....++.. +. .....+. ..........++|..|.+.|++.+++. ++++.+++ ++++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~~~~~~-gv~i~~~~~v~~~~~ 139 (356)
T PF01494_consen 63 LARGSPHEVMRIFFYDGISDSRIWVENPQIREDME--IDTKGPYGHVIDRPELDRALREEAEER-GVDIRFGTRVVSIEQ 139 (356)
T ss_dssp HHHSEEECEEEEEEEEETTTSEEEEEEEEEEEECH--STSGSSCEEEEEHHHHHHHHHHHHHHH-TEEEEESEEEEEEEE
T ss_pred hhhcccccceeeEeecccCCccceeeecccceeee--ccccCCcchhhhHHHHHHhhhhhhhhh-hhhheeeeecccccc
Confidence 7654222 222233322 11 1111111 112233456789999999999999988 59999998 888888
Q ss_pred eCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccc----eEEEEEeecCCCCC--CeeEEEEcCCC
Q 040732 215 ENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSC----FVGMALENCQLPVP--NHGHVVLTDPS 288 (541)
Q Consensus 215 ~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~----~~g~~~~~~~~p~~--~~~~~~~~~~~ 288 (541)
+.+.+..+.....+|+..+++||+||+|||.+|.+|+.++......... +..... ...++.. +...+...+.+
T Consensus 140 d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 218 (356)
T PF01494_consen 140 DDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVF-DSDLSDPWEDHCFIYSPPSG 218 (356)
T ss_dssp ETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEE-ECHSHTTTSCEEEEEEETTE
T ss_pred cccccccccccccCCceeEEEEeeeecccCcccchhhhccccccCcccccccccccccc-cccccccccccccccccccc
Confidence 8776543333334677777899999999999999999997653222211 111111 2233322 21222333444
Q ss_pred cEEEEEccC-CceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcE
Q 040732 289 PILFYPISS-SEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGA 367 (541)
Q Consensus 289 ~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 367 (541)
.++++|..+ +...+++..+..............+.+.+.+. +.+....... .......++.......+|..+||
T Consensus 219 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~grv 293 (356)
T PF01494_consen 219 GFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLP----EIFGPDLLET-EIDEISAWPIPQRVADRWVKGRV 293 (356)
T ss_dssp EEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHH----HHHHTCHHHH-EEEEEEEEEEEEEEESSSEETTE
T ss_pred ceeEeeccCCccceEEEeeecccccccccccccccccccccc----cccccccccc-cccccccccccccccccccccee
Confidence 568999998 43445555542222222222222222222111 1111100111 22244556666667788999999
Q ss_pred EEecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHH
Q 040732 368 LLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTL 432 (541)
Q Consensus 368 vliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~l 432 (541)
+|||||||.++|+.|||+|+||+||..|+++|..... +...+++|+.|+++|+++++.++..
T Consensus 294 ~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~---g~~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 294 LLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALK---GEASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp EE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHT---TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccceeeecccccCCCCcccccHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999987632 1234688999999999999888654
No 40
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=9.1e-38 Score=325.28 Aligned_cols=359 Identities=18% Similarity=0.215 Sum_probs=240.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCch
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLD 142 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~ 142 (541)
|..+.||+||||||+|+++|+.|+++|++|+|+||.+.... .+.|..++|++.+.|+.+|++
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~------------------~g~gi~l~~~~~~~l~~lg~~ 62 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGE------------------IGAGIQLGPNAFSALDALGVG 62 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccccc------------------ccceeeeCchHHHHHHHcCCh
Confidence 34568999999999999999999999999999999976554 556778999999999999999
Q ss_pred hhHhhccceeeeeeEEEE--CCeee-eecCCCCC-CCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCC
Q 040732 143 DCVEEIDAHPVVGYALFK--DGKIT-KTPYPLGN-FQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENG 217 (541)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~--~g~~~-~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~ 217 (541)
+.+.... .....+.++. ++... ...+.... .........++|.++.+.|.+.+.+.+++++++++ ++++..+++
T Consensus 63 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~ 141 (396)
T PRK08163 63 EAARQRA-VFTDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD 141 (396)
T ss_pred HHHHhhc-cCCcceEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC
Confidence 8876532 2334444443 23221 11111000 00111235689999999999999887779999986 888887655
Q ss_pred eEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcc-cc-cceEEEEEeecCCCC---CCeeEEEEcCCCcEEE
Q 040732 218 IVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVD-IP-SCFVGMALENCQLPV---PNHGHVVLTDPSPILF 292 (541)
Q Consensus 218 ~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~-~~-~~~~g~~~~~~~~p~---~~~~~~~~~~~~~~~~ 292 (541)
+|.+.+.+|++ +.||+||+|||.+|.+|+.+...... .. ..+.+.+ .....+. ......+.++++.++.
T Consensus 142 ---~v~v~~~~g~~--~~ad~vV~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~ 215 (396)
T PRK08163 142 ---GVTVFDQQGNR--WTGDALIGCDGVKSVVRQSLVGDAPRVTGHVVYRAVI-DVDDMPEDLRINAPVLWAGPHCHLVH 215 (396)
T ss_pred ---ceEEEEcCCCE--EecCEEEECCCcChHHHhhccCCCCCccccEEEEEEE-eHHHCcchhccCccEEEEcCCceEEE
Confidence 35566677765 55999999999999999987432111 11 1111111 1111221 1223456677788899
Q ss_pred EEccCCce-EEEEEecCCCCCCC-CCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccC-ccccCCCCCCCcEEE
Q 040732 293 YPISSSEV-RCLVDVPAGQKLPS-IANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATN-RSMPAAPKTTPGALL 369 (541)
Q Consensus 293 ~p~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vvl 369 (541)
+|+.++.. ++++.++....... ..... .+.+.+.+.. +.+.+.+.+... ..+..++. ...+..+|..+|++|
T Consensus 216 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~grv~L 290 (396)
T PRK08163 216 YPLRGGEQYNLVVTFHSREQEEWGVKDGS-KEEVLSYFEG-IHPRPRQMLDKP---TSWKRWATADREPVAKWSTGRVTL 290 (396)
T ss_pred EEecCCeEEEEEEEECCCCCcccccCCCC-HHHHHHHHcC-CChHHHHHHhcC---CceeEccccCCCcccccccCcEEE
Confidence 99987764 34444432211111 11112 2233333333 333444333221 12222222 223456788999999
Q ss_pred ecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHH
Q 040732 370 LGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEARE 449 (541)
Q Consensus 370 iGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~ 449 (541)
+|||||.++|+.|||+|+||+||..|+++|... ..++..+|+.|+++|++++..++..++.+..+++.. ....
T Consensus 291 iGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~-----~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~--~~~~ 363 (396)
T PRK08163 291 LGDAAHPMTQYMAQGACMALEDAVTLGKALEGC-----DGDAEAAFALYESVRIPRTARVVLSAREMGRIYHAK--GVER 363 (396)
T ss_pred EecccccCCcchhccHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC--CHHH
Confidence 999999999999999999999999999999652 234688999999999999999999999999998755 2356
Q ss_pred HHHHHHHHH
Q 040732 450 VMRQASVDY 458 (541)
Q Consensus 450 ~lr~~~~~~ 458 (541)
.+|+..+..
T Consensus 364 ~~r~~~~~~ 372 (396)
T PRK08163 364 QVRNLLWKG 372 (396)
T ss_pred HHHHHHhhc
Confidence 677766543
No 41
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=2.1e-37 Score=318.58 Aligned_cols=352 Identities=16% Similarity=0.117 Sum_probs=232.7
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
.||+||||||+|+++|+.|+++|++|+||||.+.... .+.+..+.+++++.|+++|+++.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~------------------~g~~i~~~~~a~~~L~~lGl~~~~~ 63 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRP------------------GGQAIDVRGPALDVLERMGLLAAAQ 63 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------------------CceeeeeCchHHHHHHhcCCHHHHH
Confidence 3899999999999999999999999999999976544 4445567899999999999998886
Q ss_pred hccceeeeeeEEEE-CCeeeeecCCCCCC--CCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEE
Q 040732 147 EIDAHPVVGYALFK-DGKITKTPYPLGNF--QANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGV 222 (541)
Q Consensus 147 ~~~~~~~~g~~~~~-~g~~~~~~~~~~~~--~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV 222 (541)
.. ..+..++.++. +|............ ......+.++|.+|.+.|.+.+. +++++++++ |+++.++++ +|
T Consensus 64 ~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~--~~v~i~~~~~v~~i~~~~~---~v 137 (372)
T PRK05868 64 EH-KTRIRGASFVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQ--PSVEYLFDDSISTLQDDGD---SV 137 (372)
T ss_pred hh-ccCccceEEEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhcc--CCcEEEeCCEEEEEEecCC---eE
Confidence 53 33445555544 34322211111111 11122457889999988876542 489999987 898876655 45
Q ss_pred EEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccc--cceEEEEEe-ecCCCCCCeeEE-EEcCCCcEEEEEccCC
Q 040732 223 HYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIP--SCFVGMALE-NCQLPVPNHGHV-VLTDPSPILFYPISSS 298 (541)
Q Consensus 223 ~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~--~~~~g~~~~-~~~~p~~~~~~~-~~~~~~~~~~~p~~~~ 298 (541)
++.+++|++. +||+||+|||.+|.+|+++..+..... ......... ....+. +.... +++++..+.+||..++
T Consensus 138 ~v~~~dg~~~--~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~ 214 (372)
T PRK05868 138 RVTFERAAAR--EFDLVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLEL-DYWQTWHYGDSTMAGVYSARNN 214 (372)
T ss_pred EEEECCCCeE--EeCEEEECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCC-CcceEEEecCCcEEEEEecCCC
Confidence 6667788764 599999999999999999854332211 111111111 111222 22333 3577777889999875
Q ss_pred ce-EEEEEecCCC-CCCCCCchhHHHHHHHhcCC-CCC-hhhHHHHHhhhhcCCeeecc-CccccCCCCCCCcEEEeccc
Q 040732 299 EV-RCLVDVPAGQ-KLPSIANGEMAKYLKTKVAP-QIP-DELRDAFISKVEKGSIRTAT-NRSMPAAPKTTPGALLLGDA 373 (541)
Q Consensus 299 ~~-~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-~~~-~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vvliGDA 373 (541)
.. ..++.+...+ .......+...+.+++.+.. .+. +.+.+. +.......++ ....+.++|..|||+|+|||
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~----~~~~~~~~~~~~~~~~~~~w~~grv~LvGDA 290 (372)
T PRK05868 215 TEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHY----MRSAPDFYFDEMSQILMDRWSRGRVALVGDA 290 (372)
T ss_pred CceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhh----cccCCceeeccceEEecCCCCCCCeeeeecc
Confidence 43 3344333111 11111122334445554432 122 333322 2212112233 34455678999999999999
Q ss_pred CCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 040732 374 FNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMRQ 453 (541)
Q Consensus 374 ah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr~ 453 (541)
||+++|+.|||+|+||+||..|+++|... ..+++++|+.|++..||+....+.+.......|...+ ....++|+
T Consensus 291 AH~~~P~~GqGa~~AleDa~~La~~L~~~-----~~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~p~~-~~~~~~~~ 364 (372)
T PRK05868 291 GYCCSPLSGQGTSVALLGAYILAGELKAA-----GDDYQLGFANYHAEFHGFVERNQWLVSDNIPGGAPIP-QEEFERIV 364 (372)
T ss_pred cccCCCccCccHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHhHHHHHhhhhhhccCCcccCCC-HHHHHHhh
Confidence 99999999999999999999999999653 2247889999999999999999999988888887654 44455665
Q ss_pred HH
Q 040732 454 AS 455 (541)
Q Consensus 454 ~~ 455 (541)
.+
T Consensus 365 ~~ 366 (372)
T PRK05868 365 HS 366 (372)
T ss_pred cc
Confidence 44
No 42
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=318.34 Aligned_cols=337 Identities=20% Similarity=0.219 Sum_probs=222.8
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
+||+||||||+|+++|+.|+++|++|+|+||.+.... .+.|..++|++++.|+++|+++.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~------------------~g~gi~l~p~~~~~L~~lgl~~~l~ 62 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRP------------------LGVGINLLPHAVRELAELGLLDALD 62 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccc------------------cCcceeeCchHHHHHHHCCCHHHHH
Confidence 4899999999999999999999999999999876544 5677889999999999999998876
Q ss_pred hccceeeeeeEEEEC-CeeeeecCCCC-CCCCCccceeecchHHHHHHHHHHHc-CCCeEEEeCe-EEEeeeeCCeEEEE
Q 040732 147 EIDAHPVVGYALFKD-GKITKTPYPLG-NFQANVAGRSFHNGRFIQRMREKAAS-LPNVRMEEGT-VTSLFEENGIVKGV 222 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~-g~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~-~~~v~v~~~~-v~~l~~~~~~v~gV 222 (541)
.. ..+..++.++.. |... ...+.. ........+.++|.+|.+.|.+.+.+ .+.++++.++ |+++.++++.+. +
T Consensus 63 ~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~ 139 (413)
T PRK07538 63 AI-GIRTRELAYFNRHGQRI-WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-V 139 (413)
T ss_pred hh-CCCCcceEEEcCCCCEE-eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-E
Confidence 53 333445555432 3321 111111 01112224579999999999998865 4556788887 999887655322 3
Q ss_pred EEEc-CCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEeecCCCC----CCeeEEEEc-CCCcEEEEEcc
Q 040732 223 HYKT-KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENCQLPV----PNHGHVVLT-DPSPILFYPIS 296 (541)
Q Consensus 223 ~v~~-~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~~~p~----~~~~~~~~~-~~~~~~~~p~~ 296 (541)
.+.+ .+|+..+++||+||+|||.+|.+|+++..... ...+.++..+....+. ......+.+ +++.+++||+.
T Consensus 140 ~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 217 (413)
T PRK07538 140 FLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYPDEG--PPRWNGVMMWRGVTEAPPFLTGRSMVMAGHLDGKLVVYPIS 217 (413)
T ss_pred EEeccCCCccceEEeeEEEECCCCCHHHhhhhcCCCC--CCcccceEEEEEeecCccccCCCcEEEEcCCCCEEEEEECC
Confidence 3332 24444567899999999999999999875432 2334444433221111 111223443 35679999987
Q ss_pred CC-------ceEEEEEecCCC----CCCCCCchhHHHHHHHhcCCCCCh--hhHHHHHhhhhcCCeeeccCccc-cCCCC
Q 040732 297 SS-------EVRCLVDVPAGQ----KLPSIANGEMAKYLKTKVAPQIPD--ELRDAFISKVEKGSIRTATNRSM-PAAPK 362 (541)
Q Consensus 297 ~~-------~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~-~~~~~ 362 (541)
++ .+.|.+..+... ....+......+.+.+.+....++ .+.+.+. ....+..+|.... +.++|
T Consensus 218 ~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~p~~~~~~~~~w 294 (413)
T PRK07538 218 EPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIR---AAEAIYEYPMVDRDPLPRW 294 (413)
T ss_pred CCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHh---cCcceeeccccccCCCCcc
Confidence 64 344555544221 111122222222222222211111 1222221 1234555666544 46689
Q ss_pred CCCcEEEecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHH
Q 040732 363 TTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANS 435 (541)
Q Consensus 363 ~~~~vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~ 435 (541)
..+|++|+|||||.++|++|||+|+||+||..|+++|.... +...+|+.|+++|++++..++..++.
T Consensus 295 ~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~~------~~~~aL~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 295 TRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAHG------DPEAALAAYEAERRPATAQIVLANRL 361 (413)
T ss_pred cCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999997631 26789999999999999999887765
No 43
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=6.9e-37 Score=320.17 Aligned_cols=343 Identities=19% Similarity=0.215 Sum_probs=226.4
Q ss_pred CcEEEECCChHHHHHHHHHhhCC-CcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDG-RRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G-~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.+|+||||||+||++|+.|+++| ++|+|+||.+.... .+.|..++|++++.|+++|+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~------------------~G~gi~l~~~~~~~L~~lg~~~~~ 62 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGE------------------VGAGVSFGANAVRAIVGLGLGEAY 62 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCC------------------CccceeeCccHHHHHHHcCChhHH
Confidence 36999999999999999999998 69999999876544 566677999999999999998877
Q ss_pred hhccce---eeeeeE-EEECCeeee-ecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeE
Q 040732 146 EEIDAH---PVVGYA-LFKDGKITK-TPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIV 219 (541)
Q Consensus 146 ~~~~~~---~~~g~~-~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v 219 (541)
...... ...... .+.++.... .... .........++|.+|.+.|.+.+. +..++.++ |+++..+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~R~~l~~~L~~~~~---~~~v~~~~~v~~i~~~~~-- 134 (414)
T TIGR03219 63 TQVADSTPAPWQDIWFEWRNGSDASYLGAT---IAPGVGQSSVHRADFLDALLKHLP---EGIASFGKRATQIEEQAE-- 134 (414)
T ss_pred HHHhcCCCccCcceeEEEEecCccceeeee---ccccCCcccCCHHHHHHHHHHhCC---CceEEcCCEEEEEEecCC--
Confidence 654321 111111 111221111 1100 001111235899999999988763 45566676 999887665
Q ss_pred EEEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCC--CcccccceEEEEEeecCC--------------CC--CCeeE
Q 040732 220 KGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNP--KVDIPSCFVGMALENCQL--------------PV--PNHGH 281 (541)
Q Consensus 220 ~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~--~~~~~~~~~g~~~~~~~~--------------p~--~~~~~ 281 (541)
+|++.+++|++ +.||+||+|||.+|.+|+.+... .+.....+.++..+...+ +. .+...
T Consensus 135 -~~~v~~~~g~~--~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (414)
T TIGR03219 135 -EVQVLFTDGTE--YRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQ 211 (414)
T ss_pred -cEEEEEcCCCE--EEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccce
Confidence 35566677875 45999999999999999987421 111222333332221110 00 12234
Q ss_pred EEEcCCCcEEEEEccCCceEEEEEec-CCC-C------CCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeecc
Q 040732 282 VVLTDPSPILFYPISSSEVRCLVDVP-AGQ-K------LPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTAT 353 (541)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~-~------~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 353 (541)
.++++++.+++||+.+++..+++.+. ... . ...+......+.+.+.+ ..+++.+.+.+... ... ..++
T Consensus 212 ~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~~~~-~~~--~~~~ 287 (414)
T TIGR03219 212 MYLGLDGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAF-AGWGDAARALLECI-PAP--TLWA 287 (414)
T ss_pred EEEcCCCeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHh-cCCCHHHHHHHHhC-CCC--Ccee
Confidence 67788888999999998754433332 111 0 11122222333344433 34566665544332 211 2233
Q ss_pred Cccc-cCCCCCCCcEEEecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHH
Q 040732 354 NRSM-PAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTL 432 (541)
Q Consensus 354 ~~~~-~~~~~~~~~vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~l 432 (541)
.... +..+|..+|++|+|||||.+.|+.|||+|+||+||..|+++|.... ....+++.+|+.|+++|++++..++..
T Consensus 288 ~~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~--~~~~~~~~al~~Ye~~R~~r~~~~~~~ 365 (414)
T TIGR03219 288 LHDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTE--LEAGDLPALLEAYDDVRRPRACRVQRT 365 (414)
T ss_pred eeecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhc--cCcchHHHHHHHHHHHHhHHHHHHHHH
Confidence 3322 3567889999999999999999999999999999999999997632 123567899999999999999999999
Q ss_pred HHHHHhhhcCCC
Q 040732 433 ANSAYQVFSASS 444 (541)
Q Consensus 433 s~~l~~~~~~~~ 444 (541)
++.+..++...+
T Consensus 366 s~~~~~~~~~~~ 377 (414)
T TIGR03219 366 SREAGELYELRD 377 (414)
T ss_pred HHHHHHHhcCCC
Confidence 999999887653
No 44
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=3e-36 Score=312.46 Aligned_cols=334 Identities=22% Similarity=0.267 Sum_probs=219.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
+...||+||||||+|+++|+.|+++|++|+|+||.+..... ++.|..+++++.+.|+++|+.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-----------------~g~gi~l~~~~~~~l~~lg~~~ 66 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDG-----------------RGAGIVLQPELLRALAEAGVAL 66 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCC-----------------CCceeEeCHHHHHHHHHcCCCc
Confidence 35689999999999999999999999999999998643210 4556778999999999999976
Q ss_pred hHhhccceeeeeeEEEEC-CeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEE
Q 040732 144 CVEEIDAHPVVGYALFKD-GKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKG 221 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~g 221 (541)
.. .. ..+.....++.. |+.. ...+.. ....++..+.+.|.+.+ ++++++.++ |+++..+++ +
T Consensus 67 ~~-~~-~~~~~~~~~~~~~g~~~-~~~~~~-------~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~---~ 130 (386)
T PRK07236 67 PA-DI-GVPSRERIYLDRDGRVV-QRRPMP-------QTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQDGD---R 130 (386)
T ss_pred cc-cc-ccCccceEEEeCCCCEe-eccCCC-------ccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEecCC---e
Confidence 54 22 222333333332 3221 111110 11245667777777643 577888887 999987765 3
Q ss_pred EEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-----ecCCCCC------CeeEEEEcCCCcE
Q 040732 222 VHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-----NCQLPVP------NHGHVVLTDPSPI 290 (541)
Q Consensus 222 V~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-----~~~~p~~------~~~~~~~~~~~~~ 290 (541)
|++..++|++ ++||+||+|||.+|.+|+++.... ...+.++..+ ...++.. .....+.++++.+
T Consensus 131 v~v~~~~g~~--~~ad~vIgADG~~S~vR~~l~~~~---~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (386)
T PRK07236 131 VTARFADGRR--ETADLLVGADGGRSTVRAQLLPDV---RPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHI 205 (386)
T ss_pred EEEEECCCCE--EEeCEEEECCCCCchHHHHhCCCC---CCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceE
Confidence 5566778875 559999999999999999884322 1223333222 1122211 2233456777788
Q ss_pred EEEEccCC---------ceEEEEEecCCC--CC-----------------CCCCchhHHHHHHHhcCCCCChhhHHHHHh
Q 040732 291 LFYPISSS---------EVRCLVDVPAGQ--KL-----------------PSIANGEMAKYLKTKVAPQIPDELRDAFIS 342 (541)
Q Consensus 291 ~~~p~~~~---------~~~~~~~~~~~~--~~-----------------~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 342 (541)
+.||+++. ..++.+..+... .. +.....+..+.+++.....+++.+...+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 285 (386)
T PRK07236 206 LGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEA 285 (386)
T ss_pred EEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 88988642 233444433111 00 000122334444443333355555544322
Q ss_pred hhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHh
Q 040732 343 KVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLR 422 (541)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R 422 (541)
.. ....++.......+|..+|++|+|||||.++|+.|||+|+||+||..|+++|.... .++..+|+.|+++|
T Consensus 286 ~~---~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~-----~~~~~al~~Ye~~R 357 (386)
T PRK07236 286 TA---QPFVQAIFDLEVPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA-----GDIDAALAAWEAER 357 (386)
T ss_pred Cc---CchhhhhhcccCcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHh
Confidence 21 12223444444567889999999999999999999999999999999999997642 23678999999999
Q ss_pred cChhHHHHHHHHHHHhhhcCC
Q 040732 423 KPVASTINTLANSAYQVFSAS 443 (541)
Q Consensus 423 ~~~~~~i~~ls~~l~~~~~~~ 443 (541)
++++..++..++.+..++...
T Consensus 358 ~~r~~~~~~~s~~~~~~~~~~ 378 (386)
T PRK07236 358 LAVGAAIVARGRRLGARLQAQ 378 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999888777543
No 45
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=1.3e-34 Score=309.91 Aligned_cols=349 Identities=17% Similarity=0.156 Sum_probs=224.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCch
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLD 142 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~ 142 (541)
+..+.+|+||||||+|+++|++|+++|++|+|+||++.... ..+. ...+..+++++++.|+++|++
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r-~~G~-------------~~~~I~L~pngl~aLe~LGl~ 143 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIR-GEGK-------------YRGPIQIQSNALAALEAIDID 143 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccc-cccc-------------cCcccccCHHHHHHHHHcCcc
Confidence 45678999999999999999999999999999999863211 0000 113467999999999999853
Q ss_pred --hhHhhccceeeeeeE-EEE--CCeeeeecCCCC---CCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEee
Q 040732 143 --DCVEEIDAHPVVGYA-LFK--DGKITKTPYPLG---NFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLF 213 (541)
Q Consensus 143 --~~~~~~~~~~~~g~~-~~~--~g~~~~~~~~~~---~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~ 213 (541)
+.+..........+. +.. .|.. ...++.. .......++.++|.+|.+.|.+.+. ...++.++ |+++.
T Consensus 144 ~~e~l~~~g~~~~~~i~~~~d~~~G~~-~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg---~~~i~~g~~V~~I~ 219 (668)
T PLN02927 144 VAEQVMEAGCITGDRINGLVDGISGSW-YVKFDTFTPAASRGLPVTRVISRMTLQQILARAVG---EDVIRNESNVVDFE 219 (668)
T ss_pred hHHHHHhhcCcccceeeeeeecCCCce-EeeccccccccccCCCeEEEEeHHHHHHHHHhhCC---CCEEEcCCEEEEEE
Confidence 444443221111111 111 2221 1222110 0011123568999999999977653 23456664 99988
Q ss_pred eeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEee--cCC-CC---CCeeEEEEcCC
Q 040732 214 EENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALEN--CQL-PV---PNHGHVVLTDP 287 (541)
Q Consensus 214 ~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~--~~~-p~---~~~~~~~~~~~ 287 (541)
.+++ +|++.+.+|++ +.+|+||+|||++|.+|+.+...... .+.++.++. ... +. ......+.+.+
T Consensus 220 ~~~d---~VtV~~~dG~t--i~aDlVVGADG~~S~vR~~l~g~~~~---~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~ 291 (668)
T PLN02927 220 DSGD---KVTVVLENGQR--YEGDLLVGADGIWSKVRNNLFGRSEA---TYSGYTCYTGIADFIPADIESVGYRVFLGHK 291 (668)
T ss_pred EeCC---EEEEEECCCCE--EEcCEEEECCCCCcHHHHHhcCCCCC---cccceEEEEEEcCCCcccccccceEEEEcCC
Confidence 7766 45566677865 45999999999999999988543222 233333321 111 11 11123455666
Q ss_pred CcEEEEEccCCceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccc-cCCCCCCCc
Q 040732 288 SPILFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSM-PAAPKTTPG 366 (541)
Q Consensus 288 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 366 (541)
..+..+|.++++.+|+...+.+. ......+...+.+.+.+. .+++.+.+.+.. .+...+..++.... +..+|..+|
T Consensus 292 ~~~v~~~v~~g~~~~~~f~~~p~-~~~~~~~~~~e~L~~~f~-~w~~~v~elI~~-t~~~~i~~~~iyd~~p~~~W~~gr 368 (668)
T PLN02927 292 QYFVSSDVGGGKMQWYAFHEEPA-GGADAPNGMKKRLFEIFD-GWCDNVLDLLHA-TEEDAILRRDIYDRSPGFTWGKGR 368 (668)
T ss_pred eEEEEEcCCCCeEEEEEEEECCc-cccccchhHHHHHHHHhc-cCCHHHHHHHHh-CccccceeeeEEeccCCCccccCc
Confidence 77777888887776655433111 111123445556665543 456666654433 23233334444443 345788999
Q ss_pred EEEecccCCCCCCCCCcchhHHHhhHHHHHHhccccCC----CCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhh
Q 040732 367 ALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQD----FHDAASLNQYLESFYTLRKPVASTINTLANSAYQVF 440 (541)
Q Consensus 367 vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~----~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~ 440 (541)
++|+|||||.++|+.|||+|+||+||..|+++|..... .+...++..+|+.|+++|++++..++..++.....+
T Consensus 369 VvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~ 446 (668)
T PLN02927 369 VTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMA 446 (668)
T ss_pred EEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976421 122345789999999999999999998877655554
No 46
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=5.8e-31 Score=275.42 Aligned_cols=342 Identities=16% Similarity=0.141 Sum_probs=214.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
...|||+||||||||+++|+.|+++|++|+|+||... .. +.+|..++. ..++++|+.+
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~------------------k~cgg~i~~---~~l~~lgl~~ 94 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NA------------------KPCGGAIPL---CMVGEFDLPL 94 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CC------------------CCccccccH---hHHhhhcCcH
Confidence 4569999999999999999999999999999999853 33 456667754 5567788876
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeC--CeEEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEEN--GIVKG 221 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~--~~v~g 221 (541)
.+.. ..+.++.++..+. ....++.. .........++|..|++.|++.+.+. |++++.++++++..+. +....
T Consensus 95 ~~~~---~~i~~~~~~~p~~-~~v~~~~~-~~~~~~~~~v~R~~~d~~L~~~A~~~-Ga~~~~~~v~~i~~~~~~~~~~~ 168 (450)
T PLN00093 95 DIID---RKVTKMKMISPSN-VAVDIGKT-LKPHEYIGMVRREVLDSFLRERAQSN-GATLINGLFTRIDVPKDPNGPYV 168 (450)
T ss_pred HHHH---HHhhhheEecCCc-eEEEeccc-CCCCCeEEEecHHHHHHHHHHHHHHC-CCEEEeceEEEEEeccCCCCcEE
Confidence 5433 2333444443221 12222211 11112223589999999999999887 8999888887776421 22233
Q ss_pred EEEEcC-----CCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEeecCCC------CCCeeEEEEc----C
Q 040732 222 VHYKTK-----DGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENCQLP------VPNHGHVVLT----D 286 (541)
Q Consensus 222 V~v~~~-----~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~~~p------~~~~~~~~~~----~ 286 (541)
|++... +|+..+++||+||+|||.+|.+|+.++..... ...++... ...| .++...++++ +
T Consensus 169 v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~p 244 (450)
T PLN00093 169 IHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGDYD---YAIAFQER-IKIPDDKMEYYEDLAEMYVGDDVSP 244 (450)
T ss_pred EEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCCCCcc---eeEEEEEE-EeCChhhccccCCeEEEEeCCCCCC
Confidence 554432 14445678999999999999999999765321 11222211 1122 1234556665 4
Q ss_pred CCcEEEEEccCCceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcC---CeeeccCccccCCCCC
Q 040732 287 PSPILFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKG---SIRTATNRSMPAAPKT 363 (541)
Q Consensus 287 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 363 (541)
+++.|+||.++ ..++.+... .. ..+..+..+.+.+.. ...+..+ +....+....+..++.
T Consensus 245 ~~Y~WifP~g~-~~~VG~g~~-~~---~~~~~~~~~~l~~~~------------~~~l~~~~~~~~~~~~ip~~~~~~~~ 307 (450)
T PLN00093 245 DFYGWVFPKCD-HVAVGTGTV-VN---KPAIKKYQRATRNRA------------KDKIAGGKIIRVEAHPIPEHPRPRRV 307 (450)
T ss_pred CceEEEEECCC-cEEEEEEEc-cC---CCChHHHHHHHHHHh------------hhhcCCCeEEEEEEEEccccccccee
Confidence 46889999995 455554322 11 111122222222111 0111111 1222222223445677
Q ss_pred CCcEEEecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCC
Q 040732 364 TPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSAS 443 (541)
Q Consensus 364 ~~~vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~ 443 (541)
.+|++|+|||||.++|++|+|++.||.++..+++.+.+....++...-...|+.|++.++............+.++|..
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~- 386 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYR- 386 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 8999999999999999999999999999999999997643221111113568999998887777777788888888876
Q ss_pred ChHHHHHHHHHH
Q 040732 444 SDEAREVMRQAS 455 (541)
Q Consensus 444 ~~~~~~~lr~~~ 455 (541)
+++....+-+.|
T Consensus 387 ~~~~~~~~~~~~ 398 (450)
T PLN00093 387 SNPAREAFVEMC 398 (450)
T ss_pred CcHHHHHHHHHh
Confidence 345444444444
No 47
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=2.6e-32 Score=267.56 Aligned_cols=336 Identities=21% Similarity=0.264 Sum_probs=189.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
-+|||||||++|+++|++|+|.|++|+|+|++..+.. .+.+..+.-++.++|+.+|+.+.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~------------------~g~si~L~~ng~~aLkai~~~e~i~ 64 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG------------------EGTSINLALNGWRALKAIGLKEQIR 64 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc------------------CCcceeehhhHHHHHHHcccHHHHH
Confidence 4799999999999999999999999999999765544 2233345556999999999888887
Q ss_pred hccceeeeeeEEEE--CCe-eeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EE-EeeeeCCeEEE
Q 040732 147 EIDAHPVVGYALFK--DGK-ITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VT-SLFEENGIVKG 221 (541)
Q Consensus 147 ~~~~~~~~g~~~~~--~g~-~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~-~l~~~~~~v~g 221 (541)
+. ..+..+..... +|+ ..+..|+... ..-..+.|..+.+.+...+...+++.++... .+ ...+.+.....
T Consensus 65 ~~-gip~~~~v~~~~~sg~~~~~~~~~~~~----~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~ 139 (420)
T KOG2614|consen 65 EQ-GIPLGGRVLIHGDSGKEVSRILYGEPD----EYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKK 139 (420)
T ss_pred Hh-cCcccceeeeecCCCCeeEecccCCch----HHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccc
Confidence 74 33444432222 233 3334443221 1122344555555555555545677776532 11 11111111112
Q ss_pred EEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcc--cccceEEEEEeecCCCCCCeeEEEEcCCCcEEEEEccCCc
Q 040732 222 VHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVD--IPSCFVGMALENCQLPVPNHGHVVLTDPSPILFYPISSSE 299 (541)
Q Consensus 222 V~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~--~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~ 299 (541)
..+++.+|.+ +++|++|+|||++|.||+.++...+. ....+.|+.......|. ...++...++.+..-|.+...
T Consensus 140 ~~v~l~~g~~--~~~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~--~~~vf~~~~~~~~~~~~~~~~ 215 (420)
T KOG2614|consen 140 LVVHLSDGTT--VKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPF--GKKVFAIYGNGLHSWPRPGFH 215 (420)
T ss_pred cceecCCCcE--EEeeEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCc--ccceecccCCeEEEcccCCce
Confidence 3455667775 55999999999999999999865322 22334444433333332 122233333334444444443
Q ss_pred eEEEEEecCCCC---C-CCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCC-----CCCCCcEEEe
Q 040732 300 VRCLVDVPAGQK---L-PSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAA-----PKTTPGALLL 370 (541)
Q Consensus 300 ~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~vvli 370 (541)
..+++....... . +....+.+.....+. ...+++.+.+.+ +.+....+...|...+++. ...+++|+|+
T Consensus 216 ~~~y~~~~k~~t~t~~~~~~e~~~l~~~~~~v-~~~~~en~~d~i-~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~ 293 (420)
T KOG2614|consen 216 LIAYWFLDKSLTSTDFAPFDEPEKLKKTSLEV-VDFFPENFPDII-ELTGEESIVRTPLADRPPWPLISVKCSPGNVVLL 293 (420)
T ss_pred EEEEEeecCCcccccccCcCCHHHHhhhHHHH-HHHhHHhHHHHH-HhcChHHhhhchhhhcCCcCeeeeccCCCeEEEe
Confidence 333333210000 0 111222333322222 223444444433 2233334444444444333 2345689999
Q ss_pred cccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q 040732 371 GDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQ 438 (541)
Q Consensus 371 GDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~ 438 (541)
|||||+|.|+.|||+|+||+|+..|+++|.++.+ ++......|.+ .+....+..++...|.
T Consensus 294 GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~-----d~s~~~~~~s~--~~e~~~~ie~a~~~Y~ 354 (420)
T KOG2614|consen 294 GDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIN-----DVSLAGEEYSR--ENESHAIIELAMYSYK 354 (420)
T ss_pred cccccccCCcccccccchHHHHHHHHHHHHHhcc-----chhccccceec--ccchhHHHHHHHHHHH
Confidence 9999999999999999999999999999998632 14445555554 3344444444443333
No 48
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=4.2e-30 Score=266.48 Aligned_cols=323 Identities=18% Similarity=0.204 Sum_probs=206.4
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
|||+||||||||+++|+.|+++|++|+|+|+.. ... +.+|+.+++ ..++++|+.+.+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~------------------~~cg~~i~~---~~l~~l~i~~~~~ 58 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNI------------------KPCGGAIPP---CLIEEFDIPDSLI 58 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCc------------------CcCcCCcCH---hhhhhcCCchHHH
Confidence 799999999999999999999999999999983 222 456666765 3467788876554
Q ss_pred hccceeeeeeEEEEC-CeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEEEEE
Q 040732 147 EIDAHPVVGYALFKD-GKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGVHYK 225 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV~v~ 225 (541)
. ....+..++.. +.......+. .......++|..|.+.|.+.+.+. +++++.++|+++..+++.+ .|++.
T Consensus 59 ~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~~fd~~L~~~a~~~-G~~v~~~~v~~v~~~~~~~-~v~~~ 129 (388)
T TIGR02023 59 D---RRVTQMRMISPSRVPIKVTIPS----EDGYVGMVRREVFDSYLRERAQKA-GAELIHGLFLKLERDRDGV-TLTYR 129 (388)
T ss_pred h---hhcceeEEEcCCCceeeeccCC----CCCceEeeeHHHHHHHHHHHHHhC-CCEEEeeEEEEEEEcCCeE-EEEEE
Confidence 3 23445555543 2222222221 111122589999999999999887 8898887888887766643 35554
Q ss_pred c----CCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEeecCC------CCCCeeEEEEc----CCCcEE
Q 040732 226 T----KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENCQL------PVPNHGHVVLT----DPSPIL 291 (541)
Q Consensus 226 ~----~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~~~------p~~~~~~~~~~----~~~~~~ 291 (541)
. .+|+..+++||+||+|||.+|.+|+.++.+... . ...++.. .... ..++...++++ ++++.|
T Consensus 130 ~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~-~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~w 206 (388)
T TIGR02023 130 TPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKNL-P-RVIAYQE-RIKLPDDKMAYYEELADVYYGGEVSPDFYGW 206 (388)
T ss_pred eccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCCC-c-EEEEEEE-EecCCchhcccCCCeEEEEECCCcCCCceEE
Confidence 3 134445678999999999999999998765321 1 1112211 1111 12334445543 456899
Q ss_pred EEEccCCceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEec
Q 040732 292 FYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLG 371 (541)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliG 371 (541)
++|.++ ..++.+... . ...+..+..+.+.+... +.. . +.+ .......|. .+..+|..+|++++|
T Consensus 207 v~P~~~-~~~vg~~~~-~---~~~~~~~~~~~l~~~~~--~~~-~-----~~~-~~~~~~ip~--~~~~~~~~~~v~lvG 270 (388)
T TIGR02023 207 VFPKGD-HIAVGTGTG-T---HGFDAKQLQANLRRRAG--LDG-G-----QTI-RREAAPIPM--KPRPRWDFGRAMLVG 270 (388)
T ss_pred EeeCCC-eeEEeEEEC-C---CCCCHHHHHHHHHHhhC--CCC-c-----eEe-eeeeEeccc--cccccccCCCEEEEe
Confidence 999985 444444321 1 11122233333333211 100 0 000 011122333 334567789999999
Q ss_pred ccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCC
Q 040732 372 DAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSAS 443 (541)
Q Consensus 372 DAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~ 443 (541)
||||.++|++|||++.||.++..+++.+.+....++ ...|+.|+++++..........+.+..++..+
T Consensus 271 DAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~----~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (388)
T TIGR02023 271 DAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGD----ATDLRHYERKFMKLYGTTFRVLRVLQMVYYRS 338 (388)
T ss_pred ccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999987543222 35799999998887766656677777776544
No 49
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.98 E-value=7.9e-30 Score=264.47 Aligned_cols=342 Identities=15% Similarity=0.165 Sum_probs=209.7
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
+||+||||||||+++|+.|+++|++|+|+||... .. +.||+.+.+ ..++++|+.+.+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~-~~------------------~~cg~~i~~---~~l~~~g~~~~~~ 58 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD-NA------------------KPCGGAIPL---CMVDEFALPRDII 58 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC-CC------------------CCccccccH---hhHhhccCchhHH
Confidence 5899999999999999999999999999999753 23 445666654 4567788775543
Q ss_pred hccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeee--eCCeEEEEEE
Q 040732 147 EIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFE--ENGIVKGVHY 224 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~--~~~~v~gV~v 224 (541)
. ....+..++..+. ....+... .........++|..|.+.|.+.+.+. |++++.++++++.. +.+...+|++
T Consensus 59 ~---~~i~~~~~~~p~~-~~~~~~~~-~~~~~~~~~v~R~~~d~~L~~~a~~~-G~~v~~~~~~~i~~~~~~~~~~~v~~ 132 (398)
T TIGR02028 59 D---RRVTKMKMISPSN-IAVDIGRT-LKEHEYIGMLRREVLDSFLRRRAADA-GATLINGLVTKLSLPADADDPYTLHY 132 (398)
T ss_pred H---hhhceeEEecCCc-eEEEeccC-CCCCCceeeeeHHHHHHHHHHHHHHC-CcEEEcceEEEEEeccCCCceEEEEE
Confidence 2 2333444433221 11221110 01111223589999999999999887 89999888777643 2233445665
Q ss_pred EcCC-----CcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEeecCCC------CCCeeEEEEc----CCCc
Q 040732 225 KTKD-----GQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENCQLP------VPNHGHVVLT----DPSP 289 (541)
Q Consensus 225 ~~~~-----g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~~~p------~~~~~~~~~~----~~~~ 289 (541)
...+ |+..+++|++||+|||.+|.+|+.++.+.... ...+.. ....| .+....++++ ++++
T Consensus 133 ~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~p~gY 208 (398)
T TIGR02028 133 ISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEIDAGDYSY---AIAFQE-RIRLPDEKMAYYDDLAEMYVGDDVSPDFY 208 (398)
T ss_pred eeccccccCCCccEEEeCEEEECCCcchHHHHHhCCCCcce---EEEEEE-EeeCChhhcccCCCeEEEEeCCCCCCCce
Confidence 4433 55556889999999999999999997643211 122211 11222 1234555664 4568
Q ss_pred EEEEEccCCceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEE
Q 040732 290 ILFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALL 369 (541)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvl 369 (541)
.|+||.++ ..++.+... . .......+.+.+... ....+.. ..........+|. .+..++..+|+++
T Consensus 209 ~WifP~~~-~~~VG~g~~--~--~~~~~~~~~~~l~~~----~~~~~~~---~~~~~~~~~~ip~--~~~~~~~~~~~ll 274 (398)
T TIGR02028 209 GWVFPKCD-HVAVGTGTV--A--AKPEIKRLQSGIRAR----AAGKVAG---GRIIRVEAHPIPE--HPRPRRVVGRVAL 274 (398)
T ss_pred EEEEECCC-eEEEEEEeC--C--CCccHHHHHHhhhhh----hhhccCC---CcEEEEEEEeccc--cccccEECCCEEE
Confidence 99999985 444444321 1 111111222222210 0000000 0000001122343 2345677899999
Q ss_pred ecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHH
Q 040732 370 LGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEARE 449 (541)
Q Consensus 370 iGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~ 449 (541)
+|||||+++|++|+|++.||.++..+++.+.+....++...-...|+.|++..+.........+..+.++|.. ++....
T Consensus 275 vGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 353 (398)
T TIGR02028 275 VGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYR-SNAGRE 353 (398)
T ss_pred EEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHH
Confidence 9999999999999999999999999999997643222211124578899998887777777778888888876 444444
Q ss_pred HHHHHH
Q 040732 450 VMRQAS 455 (541)
Q Consensus 450 ~lr~~~ 455 (541)
.+-+.|
T Consensus 354 ~~~~~~ 359 (398)
T TIGR02028 354 AFVEMC 359 (398)
T ss_pred HHHHHh
Confidence 444444
No 50
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=3.1e-29 Score=250.26 Aligned_cols=284 Identities=24% Similarity=0.256 Sum_probs=180.3
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
|||+||||||+|+++|+.|++.|++|+|+||...... ..+++.+.+...+.+...+.. ...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~-~~~ 61 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY------------------KPCGGALSPRVLEELDLPLEL-IVN 61 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc------------------ccccCccCHhHHHHhcCCchh-hhh
Confidence 6999999999999999999999999999999975443 455667788777666554431 111
Q ss_pred hccceeeeeeEEEE-CCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 147 EIDAHPVVGYALFK-DGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 147 ~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
......++. +++......+ ....+.++|.++.+.|.+.+.+. +++++.++ ++++..+++.+ ++
T Consensus 62 -----~~~~~~~~~~~~~~~~~~~~------~~~~~~i~r~~l~~~l~~~~~~~-gv~~~~~~~v~~~~~~~~~~---~~ 126 (295)
T TIGR02032 62 -----LVRGARFFSPNGDSVEIPIE------TELAYVIDRDAFDEQLAERAQEA-GAELRLGTTVLDVEIHDDRV---VV 126 (295)
T ss_pred -----heeeEEEEcCCCcEEEeccC------CCcEEEEEHHHHHHHHHHHHHHc-CCEEEeCcEEeeEEEeCCEE---EE
Confidence 112222222 2322221111 23457799999999999999876 89998886 88887776643 33
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecC-C-CCCCeeEEEEc----CCCcEEEEEccC
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQ-L-PVPNHGHVVLT----DPSPILFYPISS 297 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~-~-p~~~~~~~~~~----~~~~~~~~p~~~ 297 (541)
...++. .+++||+||+|||.+|.+|+.++....... ...++... ... . ..++...++.+ +++++|++|.++
T Consensus 127 ~~~~~~-~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 204 (295)
T TIGR02032 127 IVRGGE-GTVTAKIVIGADGSRSIVAKKLGLRKEPRE-LGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGD 204 (295)
T ss_pred EEcCcc-EEEEeCEEEECCCcchHHHHhcCCCCCCcc-eeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCC
Confidence 233332 246799999999999999998876432211 12222211 111 1 12233444443 357899999999
Q ss_pred CceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCee--eccCccccCCCCCCCcEEEecccCC
Q 040732 298 SEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIR--TATNRSMPAAPKTTPGALLLGDAFN 375 (541)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vvliGDAah 375 (541)
++..+.+...... ...+..+.++++.. ..+ .+. .. +..... ..|. ..+..++..+|++++|||||
T Consensus 205 ~~~~v~~~~~~~~-----~~~~~~~~~~~~~~-~~~-~l~----~~-~~~~~~~~~~~~-~~~~~~~~~~~v~liGDAA~ 271 (295)
T TIGR02032 205 GTANVGVGSRSAE-----EGEDLKKYLKDFLA-RRP-ELK----DA-ETVEVIGAPIPI-GRPDDKTVRGNVLLVGDAAG 271 (295)
T ss_pred CeEEEeeeeccCC-----CCCCHHHHHHHHHH-hCc-ccc----cC-cEEeeeceeecc-CCCCCccccCCEEEEecccC
Confidence 9877766554221 12333444444321 111 110 11 001111 1222 12445778899999999999
Q ss_pred CCCCCCCcchhHHHhhHHHHHHhc
Q 040732 376 MRHPLTGGGMTVALSDVVVLRNLI 399 (541)
Q Consensus 376 ~~~P~~GqG~~~al~Da~~La~~L 399 (541)
.++|++|||||+||+||..+++.|
T Consensus 272 ~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 272 HVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CCCCccCCcHHHHHHHHHHHHhhC
Confidence 999999999999999999999875
No 51
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.97 E-value=6.4e-28 Score=250.31 Aligned_cols=318 Identities=20% Similarity=0.218 Sum_probs=205.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccc-cccCchhhHHHHHCCchh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVG-ELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~~~~~l~~lgl~~ 143 (541)
..|||+||||||||++||+.|++.|.+|+|+||...+.. +.++ ..+.+..++.+......+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~------------------k~~~~~~~~~~~l~~l~~~~~~~ 63 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGA------------------KPCCGGGLSPRALEELIPDFDEE 63 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCC------------------CccccceechhhHHHhCCCcchh
Confidence 569999999999999999999999999999999987665 4443 566676665443222211
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGV 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV 222 (541)
+ ...+.+..++..+....+..+. ..++.++|..|+++|++.+.+. |++++.++ ++++..+++.++.+
T Consensus 64 -i----~~~v~~~~~~~~~~~~~~~~~~------~~~y~v~R~~fd~~La~~A~~a-Gae~~~~~~~~~~~~~~~~~~~~ 131 (396)
T COG0644 64 -I----ERKVTGARIYFPGEKVAIEVPV------GEGYIVDRAKFDKWLAERAEEA-GAELYPGTRVTGVIREDDGVVVG 131 (396)
T ss_pred -h----heeeeeeEEEecCCceEEecCC------CceEEEEhHHhhHHHHHHHHHc-CCEEEeceEEEEEEEeCCcEEEE
Confidence 1 2244444444443333333221 4578999999999999999988 89999987 99988877654423
Q ss_pred EEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEeecCCCCC-CeeEEE-E----cCCCcEEEEEcc
Q 040732 223 HYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENCQLPVP-NHGHVV-L----TDPSPILFYPIS 296 (541)
Q Consensus 223 ~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~~~p~~-~~~~~~-~----~~~~~~~~~p~~ 296 (541)
.. .++ .+++|++||+|||.+|.+++.++.. ...+..+..........|.+ ...+.. + .+.++.|+||..
T Consensus 132 ~~--~~~--~e~~a~~vI~AdG~~s~l~~~lg~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~ 206 (396)
T COG0644 132 VR--AGD--DEVRAKVVIDADGVNSALARKLGLK-DRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLG 206 (396)
T ss_pred EE--cCC--EEEEcCEEEECCCcchHHHHHhCCC-CCChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECC
Confidence 22 222 4577999999999999999999887 22222333333333444422 222222 2 245889999999
Q ss_pred CCceEEEEEecCCCCCCCCCchhHHHHHHHhcCC-CCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCC
Q 040732 297 SSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAP-QIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFN 375 (541)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah 375 (541)
++..++.+.+.... +..+. .. ++++++... ...+.+.. ...+ .-.....|.......+...+|+++|||||.
T Consensus 207 ~~~~~VG~g~~~~~--~~~~~-~~-~~l~~f~~~~~~~~~~~~--~~~~-~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg 279 (396)
T COG0644 207 DGHANVGIGVLLDD--PSLSP-FL-ELLERFKEHPAIRKLLLG--GKIL-EYAAGGIPEGGPASRPLVGDGVLLVGDAAG 279 (396)
T ss_pred CceEEEEEEEecCC--cCCCc-hH-HHHHHHHhCcccchhccC--CceE-EEeeeecccCCcCCCccccCCEEEEecccc
Confidence 99888888766332 22221 11 333332211 11111100 0000 111233444433333367789999999999
Q ss_pred CCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHH
Q 040732 376 MRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTI 429 (541)
Q Consensus 376 ~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i 429 (541)
.++|++|+|+..||..+..+++.+.+..... .+.|..|++..+.....-
T Consensus 280 ~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~-----~~~l~~Y~~~~~~~~~~~ 328 (396)
T COG0644 280 FVNPLTGEGIRYAIKSGKLAAEAIAEALEGG-----EEALAEYERLLRKSLARE 328 (396)
T ss_pred CCCCcccCcHHHHHHHHHHHHHHHHHHHHcC-----hhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998753211 456777887777554433
No 52
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.97 E-value=4.4e-29 Score=277.80 Aligned_cols=321 Identities=16% Similarity=0.152 Sum_probs=205.7
Q ss_pred CcEEEECCChHHHHHHHHHhhC--CCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCC--ch
Q 040732 67 PDVIVVGAGVAGAALAHTLGTD--GRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELG--LD 142 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~--G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lg--l~ 142 (541)
++|+||||||+|+++|+.|+++ |++|+|+||.+.... .+.|..+.+++++.|+.++ +.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~------------------~G~Gi~ls~~~l~~L~~~~~~~~ 62 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDT------------------FGWGVVFSDATLGNLRAADPVSA 62 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcc------------------cCcceEccHHHHHHHHhcCHHHH
Confidence 3799999999999999999998 899999999875444 4667788999988888776 22
Q ss_pred hhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEE
Q 040732 143 DCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKG 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~g 221 (541)
..+... ........++..+.... . .......++|.+|.+.|.+.+.+. ++++++++ ++++.+
T Consensus 63 ~~~~~~-~~~~~~~~~~~~g~~~~-~-------~g~~~~~i~R~~L~~~L~e~a~~~-GV~i~~g~~v~~i~~------- 125 (765)
T PRK08255 63 AAIGDA-FNHWDDIDVHFKGRRIR-S-------GGHGFAGIGRKRLLNILQARCEEL-GVKLVFETEVPDDQA------- 125 (765)
T ss_pred HHHHHh-cccCCceEEEECCEEEE-E-------CCeeEecCCHHHHHHHHHHHHHHc-CCEEEeCCccCchhh-------
Confidence 222221 11122233333333211 1 011123589999999999999887 89998886 543311
Q ss_pred EEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCC----cccccceEEEEEeecCCCCCCeeEE-EEcCCCc--EEEEE
Q 040732 222 VHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPK----VDIPSCFVGMALENCQLPVPNHGHV-VLTDPSP--ILFYP 294 (541)
Q Consensus 222 V~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~----~~~~~~~~g~~~~~~~~p~~~~~~~-~~~~~~~--~~~~p 294 (541)
...++|+||+|||.+|.+|+++.... ......+.++-. ...++ ..... .-...++ ...||
T Consensus 126 ----------~~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~-~~~~~--~~~~~~~~~~~g~~~~~~y~ 192 (765)
T PRK08255 126 ----------LAADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGT-HKVFD--AFTFAFEETEHGWFQAHAYR 192 (765)
T ss_pred ----------hhcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEecC-CCccc--ceeEEEEecCCceEEEEEee
Confidence 11359999999999999999764211 111112222111 11111 11111 1112232 34588
Q ss_pred ccCCceEEEEEecCC----CCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhc-CCeeeccCccccCCCCCCCc---
Q 040732 295 ISSSEVRCLVDVPAG----QKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEK-GSIRTATNRSMPAAPKTTPG--- 366 (541)
Q Consensus 295 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--- 366 (541)
++++...+++.++.. .....++.++..+.+.+.+....+.. +.+ ..... ..............+|..+|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~--~li-~~~~~~~~~~w~~~~~~~~~~w~~gr~~~ 269 (765)
T PRK08255 193 FDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDGH--PLM-SNASHLRGSAWINFPRVVCERWVHWNRRV 269 (765)
T ss_pred eCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCCC--ccc-ccccccccceeeecceeccCCCccCCCcc
Confidence 888877777766421 11223344555666666554333311 111 11111 11111222333456888888
Q ss_pred -EEEecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCC
Q 040732 367 -ALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSAYQVFSAS 443 (541)
Q Consensus 367 -vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~ 443 (541)
++|+|||||.++|+.|||+|+||+||..|+++|.... .++..+|+.|+++|++++..++..++.+..+|...
T Consensus 270 ~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~-----~~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~~ 342 (765)
T PRK08255 270 PVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP-----GDLPAALAAYEEERRVEVLRIQNAARNSTEWFENV 342 (765)
T ss_pred cEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Confidence 9999999999999999999999999999999997642 25688999999999999999999999888777654
No 53
>PRK11445 putative oxidoreductase; Provisional
Probab=99.96 E-value=3.6e-28 Score=248.41 Aligned_cols=309 Identities=17% Similarity=0.173 Sum_probs=181.0
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
|||+||||||||+++|+.|+++ ++|+|+||.+...+. +.. +.+|+.+++++.+.|+++|++....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~--~~~------------~~~g~~l~~~~~~~L~~lgl~~~~~ 66 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTE--GFS------------KPCGGLLAPDAQKSFAKDGLTLPKD 66 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccc--ccc------------CcCcCccCHHHHHHHHHcCCCCCcc
Confidence 7999999999999999999999 999999998743210 000 4578899999999999999863211
Q ss_pred hccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE
Q 040732 147 EIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYK 225 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~ 225 (541)
........... .......... ......+.++|.+|.+.|.+.+ +. +++++.++ ++++.++++.+ .|++
T Consensus 67 ~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~i~R~~~~~~L~~~~-~~-gv~v~~~~~v~~i~~~~~~~-~v~~- 135 (351)
T PRK11445 67 VIANPQIFAVK------TIDLANSLTR-NYQRSYINIDRHKFDLWLKSLI-PA-SVEVYHNSLCRKIWREDDGY-HVIF- 135 (351)
T ss_pred eeeccccceee------Eecccccchh-hcCCCcccccHHHHHHHHHHHH-hc-CCEEEcCCEEEEEEEcCCEE-EEEE-
Confidence 11100000000 0000000000 0111234699999999998854 33 79999887 88887666543 2443
Q ss_pred cCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCCCCCeeEEEEc---CCCcEEEEEccCCceE
Q 040732 226 TKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLPVPNHGHVVLT---DPSPILFYPISSSEVR 301 (541)
Q Consensus 226 ~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p~~~~~~~~~~---~~~~~~~~p~~~~~~~ 301 (541)
.++|+..+++||+||+|||.+|.+|++++.+.. ...+.++..+ ....+.+. ...++. .+++.|.+|.++.. .
T Consensus 136 ~~~g~~~~i~a~~vV~AdG~~S~vr~~l~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~W~~p~~~~~-~ 211 (351)
T PRK11445 136 RADGWEQHITARYLVGADGANSMVRRHLYPDHQ--IRKYVAIQQWFAEKHPVPF-YSCIFDNEITDCYSWSISKDGYF-I 211 (351)
T ss_pred ecCCcEEEEEeCEEEECCCCCcHHhHHhcCCCc--hhhEEEEEEEecCCCCCCC-cceEEeccCCCceEEEeCCCCcE-E
Confidence 246665567899999999999999999875422 1233343322 11212121 122232 24677888886532 2
Q ss_pred EEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCC--CCCCCcEEEecccCCCCCC
Q 040732 302 CLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAA--PKTTPGALLLGDAFNMRHP 379 (541)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvliGDAah~~~P 379 (541)
+....+ ... .....+.+.+++.+. ...+.+ .+... ...+....... .+..+|+++||||||.++|
T Consensus 212 ~g~~~~-~~~-~~~~~~~l~~~l~~~-~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P 278 (351)
T PRK11445 212 FGGAYP-MKD-GRERFETLKEKLSAF-GFQFGK--------PVKTE--ACTVLRPSRWQDFVCGKDNAFLIGEAAGFISP 278 (351)
T ss_pred eccccc-ccc-hHHHHHHHHHHHHhc-cccccc--------ccccc--cccccCcccccccccCCCCEEEEEcccCccCC
Confidence 221122 110 000001111222210 001111 00000 00111111111 2335889999999999999
Q ss_pred CCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChh
Q 040732 380 LTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVA 426 (541)
Q Consensus 380 ~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~ 426 (541)
++|||++.|++|+..|++.|.+.. ...++.|++.++...
T Consensus 279 ~tG~Gi~~al~sa~~la~~l~~~~--------~~~~~~y~~~~~~~~ 317 (351)
T PRK11445 279 SSLEGISYALDSARILSEVLNKQP--------EKLNTAYWRKTRKLR 317 (351)
T ss_pred ccCccHHHHHHhHHHHHHHHHhcc--------cchHHHHHHHHHHHH
Confidence 999999999999999999996531 446889998887665
No 54
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.96 E-value=1.1e-28 Score=239.76 Aligned_cols=364 Identities=18% Similarity=0.183 Sum_probs=257.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhC----CCcEEEEecCCC--CCCCcCCcceeeeeccccccccccccccCchhhHHH
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTD----GRRVHVIERDMT--QPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKL 136 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~----G~~V~viEr~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l 136 (541)
....||||||||||+|+++|.+|... ..+|.++|-... ..+-..+. ..++|. ..+.++.+..+
T Consensus 33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~---------~f~Nrv--ss~s~~s~~~f 101 (481)
T KOG3855|consen 33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSE---------TFSNRV--SSISPASISLF 101 (481)
T ss_pred CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCc---------ccccee--ecCCcchHHHH
Confidence 34589999999999999999999864 579999998743 22210000 011133 25789999999
Q ss_pred HHCCchhhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHH--HHHHcCCCeEEEeCe-EEEee
Q 040732 137 VELGLDDCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMR--EKAASLPNVRMEEGT-VTSLF 213 (541)
Q Consensus 137 ~~lgl~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~--~~~~~~~~v~v~~~~-v~~l~ 213 (541)
+.+|.|+.+......+..++.+++.-....+.+..+....+. ++.+....+.-.|+ +..++.+++++.+.+ +.++.
T Consensus 102 k~~~awd~i~~~R~~~~~~~~v~Ds~s~a~I~~~~d~~~~d~-a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~ 180 (481)
T KOG3855|consen 102 KSIGAWDHIFHDRYQKFSRMLVWDSCSAALILFDHDNVGIDM-AFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCT 180 (481)
T ss_pred HhcCHHHHhhhhccccccceeeecccchhhhhhccccccccc-eeeeehhHHHHHHHHHHHhhhcCceeeecccceeeec
Confidence 999999998887777888887776544445555544444333 45566666777777 555667799999987 66664
Q ss_pred ee-----CCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe---ecCCCCCCeeEEEEc
Q 040732 214 EE-----NGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE---NCQLPVPNHGHVVLT 285 (541)
Q Consensus 214 ~~-----~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~---~~~~p~~~~~~~~~~ 285 (541)
.- ++..--+.+...||..+ ..|++|+|||.+|.+|+..+++...+.+...+.+.. .+..+.+..++..|-
T Consensus 181 ~~~~l~~~~n~~~~~i~l~dg~~~--~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFl 258 (481)
T KOG3855|consen 181 IPEYLIKNDNGMWFHITLTDGINF--ATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFL 258 (481)
T ss_pred cccccCCCCCcceEEEEeccCcee--eeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcC
Confidence 31 11112245557788854 499999999999999999999888888888887765 333556677788899
Q ss_pred CCCcEEEEEccCCceEEEEEecCCC--CCCCCCchhHHHHHHHhcCCC---CCh------------hhHHHHHhhhhc--
Q 040732 286 DPSPILFYPISSSEVRCLVDVPAGQ--KLPSIANGEMAKYLKTKVAPQ---IPD------------ELRDAFISKVEK-- 346 (541)
Q Consensus 286 ~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~~~------------~l~~~~~~~~~~-- 346 (541)
+.||+.+.|.+++-....|...+.. ...+..++...+.+...+..+ .+- .+.+.+......
T Consensus 259 P~GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~ 338 (481)
T KOG3855|consen 259 PTGPIALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLA 338 (481)
T ss_pred CCCceeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCccc
Confidence 9999999999999877777765211 122333444444443322111 000 000111111100
Q ss_pred -------------CCeeeccCccccCCCCCCCcEEEecccCCCCCCCCCcchhHHHhhHHHHHHhcccc----CCCCChH
Q 040732 347 -------------GSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPL----QDFHDAA 409 (541)
Q Consensus 347 -------------~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~----~~~~~~~ 409 (541)
..-..||+....+..|..+|+.++|||||.+||+.|||.|+++.|+..|.+.|.++ .+.++
T Consensus 339 ~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS-- 416 (481)
T KOG3855|consen 339 NQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGS-- 416 (481)
T ss_pred ccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccc--
Confidence 11235788888888999999999999999999999999999999999999999875 23444
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCC
Q 040732 410 SLNQYLESFYTLRKPVASTINTLANSAYQVFSASS 444 (541)
Q Consensus 410 ~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~ 444 (541)
...|+.|+++|.+....+......+.++|..+.
T Consensus 417 --~~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~ 449 (481)
T KOG3855|consen 417 --VEHLEPYERERLQHNYVLLGAVDKLHKLYATSA 449 (481)
T ss_pred --hhhhhHHHHHHhhhcchHHHHHHHHHHHHhccC
Confidence 458899999999999999999999999998774
No 55
>PRK10015 oxidoreductase; Provisional
Probab=99.95 E-value=4.2e-25 Score=230.91 Aligned_cols=363 Identities=17% Similarity=0.166 Sum_probs=200.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh-
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD- 143 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~- 143 (541)
.+||||||||||||+++|+.|+++|++|+|+||.+.+... ..+|..+.......+. .++..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k-----------------~~~gg~i~~~~~~~l~-~~~~~~ 65 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK-----------------NMTGGRLYAHTLEAII-PGFAAS 65 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc-----------------cccCceeecccHHHHc-cccccc
Confidence 4699999999999999999999999999999998754330 1123233332222221 01110
Q ss_pred -hHhhccceeeeeeEEEECCeeeeecCCCCCCC-CCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEE
Q 040732 144 -CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQ-ANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVK 220 (541)
Q Consensus 144 -~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~ 220 (541)
.++. ......+.+...+....+.+...... ....++.+.|..|.+.|.+.+++. +++++.++ |+++..+++++.
T Consensus 66 ~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~-Gv~i~~~~~V~~i~~~~~~v~ 142 (429)
T PRK10015 66 APVER--KVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQA-GAQFIPGVRVDALVREGNKVT 142 (429)
T ss_pred CCccc--cccceeEEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHc-CCEEECCcEEEEEEEeCCEEE
Confidence 0110 00111122223332333333322211 122368899999999999999887 89999886 888887777665
Q ss_pred EEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccc-eEEEEEeecCCCC------------CCeeEEEEcC-
Q 040732 221 GVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSC-FVGMALENCQLPV------------PNHGHVVLTD- 286 (541)
Q Consensus 221 gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~-~~g~~~~~~~~p~------------~~~~~~~~~~- 286 (541)
++. . ++. +++|++||+|||.+|.+++.++......+.. ..++.. ...+|. ....+++.+.
T Consensus 143 ~v~--~-~~~--~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~-~~~~~~~~i~~~~~~~~~~g~~w~~~g~~ 216 (429)
T PRK10015 143 GVQ--A-GDD--ILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKE-VIGLTPEQINDRFNITGEEGAAWLFAGSP 216 (429)
T ss_pred EEE--e-CCe--EEECCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEE-EEeCCHHHhhHhhcCCCCCCeEEEecCcc
Confidence 554 2 232 4679999999999999999887643222222 223321 112221 1122233321
Q ss_pred -CC---cEEEEEccCCceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhh-hcCCeeeccCccc-cCC
Q 040732 287 -PS---PILFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKV-EKGSIRTATNRSM-PAA 360 (541)
Q Consensus 287 -~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~ 360 (541)
++ ..|+||- .+.+++.+.+.... ... ......+++.++. ..+.+.+.+.... .+-.-...|.... ..+
T Consensus 217 ~~g~~g~G~~~~~-~d~v~vGv~~~~~~-~~~-~~~~~~~~l~~~~---~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~ 290 (429)
T PRK10015 217 SDGLMGGGFLYTN-KDSISLGLVCGLGD-IAH-AQKSVPQMLEDFK---QHPAIRPLISGGKLLEYSAHMVPEGGLAMVP 290 (429)
T ss_pred CCCCCCceEEEEc-CCcEEEEEEEehhh-hcc-CCCCHHHHHHHHh---hChHHHHHhcCCEEEEEeeEEcccCCcccCC
Confidence 11 3456664 45566655432111 111 1123333443321 1122333221110 0011223333211 223
Q ss_pred CCCCCcEEEecccCCCCCC--CCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcCh-hHHHHHHHHHHH
Q 040732 361 PKTTPGALLLGDAFNMRHP--LTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPV-ASTINTLANSAY 437 (541)
Q Consensus 361 ~~~~~~vvliGDAah~~~P--~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~-~~~i~~ls~~l~ 437 (541)
....+|++++||||+.++| ++|+||+.||.++..+|+.+.+....++. ....|..|++..+.. .-.-....+.+.
T Consensus 291 ~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~--s~~~l~~Y~~~~~~~~~~~~l~~~~~~~ 368 (429)
T PRK10015 291 QLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADF--SASSLAQYKRELEQSCVMRDMQHFRKIP 368 (429)
T ss_pred ccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCC--ccccHHHHHHHHHHCHHHHHHHHHhChH
Confidence 5667999999999999995 69999999999999999998765322221 234678898877755 323234445555
Q ss_pred hhhcCCC--hHHHHHHHHHHHHHhhcC
Q 040732 438 QVFSASS--DEAREVMRQASVDYLGLG 462 (541)
Q Consensus 438 ~~~~~~~--~~~~~~lr~~~~~~~~~~ 462 (541)
.++..+. ......+.+...+++.-.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (429)
T PRK10015 369 ALMENPRLFSQYPRMVADIMNDMFTID 395 (429)
T ss_pred hhhcCccHHHHHHHHHHHHHHHhcccC
Confidence 5554321 122345556655555543
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.95 E-value=5.3e-25 Score=228.63 Aligned_cols=306 Identities=21% Similarity=0.187 Sum_probs=180.4
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHhh
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVEE 147 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~~ 147 (541)
||+||||||||+++|+.|++.|++|+|||+.+.... ..+. .+... .++++++.+.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~---~~~~----------------~~~~~---~~~~~~~~~~~~~ 58 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG---NHTY----------------GVWDD---DLSDLGLADCVEH 58 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC---Cccc----------------cccHh---hhhhhchhhHHhh
Confidence 899999999999999999999999999999864321 1111 11221 1334454333221
Q ss_pred ccceeeee-eEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEEEEEc
Q 040732 148 IDAHPVVG-YALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGVHYKT 226 (541)
Q Consensus 148 ~~~~~~~g-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV~v~~ 226 (541)
...+ ..+...+..... ......+++.+|.+.|.+.+.+. ++++..++|+++..+++.. +.+.+
T Consensus 59 ----~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~l~~~l~~~~~~~-gv~~~~~~v~~i~~~~~~~--~~v~~ 122 (388)
T TIGR01790 59 ----VWPDVYEYRFPKQPRKL---------GTAYGSVDSTRLHEELLQKCPEG-GVLWLERKAIHAEADGVAL--STVYC 122 (388)
T ss_pred ----cCCCceEEecCCcchhc---------CCceeEEcHHHHHHHHHHHHHhc-CcEEEccEEEEEEecCCce--eEEEe
Confidence 1112 111111111111 11223589999999999999887 7888888888887763432 34445
Q ss_pred CCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEeecCCCCCCeeEEEEc----C----------CCcEEE
Q 040732 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENCQLPVPNHGHVVLT----D----------PSPILF 292 (541)
Q Consensus 227 ~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~----~----------~~~~~~ 292 (541)
++|++ ++|++||+|||.+|.+++......... ..+.|+.+.-...+.+....+++. + ++++|+
T Consensus 123 ~~g~~--~~a~~VI~A~G~~s~~~~~~~~~~~~~-q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~ 199 (388)
T TIGR01790 123 AGGQR--IQARLVIDARGFGPLVQYVRFPLNVGF-QVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYA 199 (388)
T ss_pred CCCCE--EEeCEEEECCCCchhcccccCCCCceE-EEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEE
Confidence 66754 559999999999997754332211111 235566554322221111112211 1 126889
Q ss_pred EEccCCceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecc
Q 040732 293 YPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGD 372 (541)
Q Consensus 293 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGD 372 (541)
+|.++++..+..... ...+..+.++.++.+.+++... .... ..+.......+|..... ++..+|+++|||
T Consensus 200 lP~~~~~~~v~~~~~--~~~~~~~~~~~~~~l~~~~~~~-g~~~-----~~i~~~~~~~iP~~~~~--~~~~~rv~liGd 269 (388)
T TIGR01790 200 MPLGSTRVFIEETSL--ADRPALPRDRLRQRILARLNAQ-GWQI-----KTIEEEEWGALPVGLPG--PFLPQRVAAFGA 269 (388)
T ss_pred eecCCCeEEEEeccc--cCCCCCCHHHHHHHHHHHHHHc-CCee-----eEEEeeeeEEEecccCC--CccCCCeeeeec
Confidence 999988654432211 1112334455666665543211 1000 01111233344554432 236789999999
Q ss_pred cCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHH
Q 040732 373 AFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVAST 428 (541)
Q Consensus 373 Aah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~ 428 (541)
|||+++|++|+|++.|++++..+++.|.+....+ ...+++.|+...+++...
T Consensus 270 AAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~----~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 270 AAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS----SELATAAWDGLWPTERRR 321 (388)
T ss_pred hhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC----HHHHHHHHHHhchHHHHH
Confidence 9999999999999999999999999997643211 256788887665555544
No 57
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.94 E-value=1.1e-23 Score=220.52 Aligned_cols=324 Identities=20% Similarity=0.192 Sum_probs=180.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
..||||||||||||+++|+.|+++|++|+|+||.+.+... ..+|..+.....+ ++ .+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k-----------------~~~gg~l~~~~~e---~l--~~~ 61 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK-----------------NVTGGRLYAHSLE---HI--IPG 61 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc-----------------ccccceechhhHH---HH--hhh
Confidence 4599999999999999999999999999999998754330 1122223322222 21 111
Q ss_pred Hhh---cc-ceeeeeeEEEECCeeeeecCCCCC-CCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCe
Q 040732 145 VEE---ID-AHPVVGYALFKDGKITKTPYPLGN-FQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGI 218 (541)
Q Consensus 145 ~~~---~~-~~~~~g~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~ 218 (541)
+.. .. ......+.+..........+.... ......++.+.|.+|.+.|.+.+.+. |++++.++ |+++..+++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~-Gv~i~~~~~V~~i~~~~g~ 140 (428)
T PRK10157 62 FADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEA-GAQLITGIRVDNLVQRDGK 140 (428)
T ss_pred hhhcCcccceeeeeeEEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHC-CCEEECCCEEEEEEEeCCE
Confidence 110 00 001111222222222223332111 11223467899999999999999887 89999986 9998877776
Q ss_pred EEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEe-ecCCC-----------C-CCeeEEEEc
Q 040732 219 VKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALE-NCQLP-----------V-PNHGHVVLT 285 (541)
Q Consensus 219 v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~-~~~~p-----------~-~~~~~~~~~ 285 (541)
+.+++ .+|.+ ++|++||+|||.+|.+++.++......+ ...++.++ ...+| . +...+.+.+
T Consensus 141 v~~v~---~~g~~--i~A~~VI~A~G~~s~l~~~lgl~~~~~~-~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g 214 (428)
T PRK10157 141 VVGVE---ADGDV--IEAKTVILADGVNSILAEKLGMAKRVKP-TDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAG 214 (428)
T ss_pred EEEEE---cCCcE--EECCEEEEEeCCCHHHHHHcCCCCCCCC-cEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEE
Confidence 54443 34554 5699999999999999999876432222 22222211 11111 1 122333333
Q ss_pred CC--C---cEEEEEccCCceEEEEEecCCC-CCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhh-hcCCeeeccCcc-c
Q 040732 286 DP--S---PILFYPISSSEVRCLVDVPAGQ-KLPSIANGEMAKYLKTKVAPQIPDELRDAFISKV-EKGSIRTATNRS-M 357 (541)
Q Consensus 286 ~~--~---~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~-~ 357 (541)
.+ + .-|+|+- .+.+.+.+.+.... .....+..++.+.+.+ .+.+.+.+...- ..-.....|... .
T Consensus 215 ~~~~g~~ggG~~~~~-~~~~svG~~~~~~~~~~~~~~~~~~l~~~~~------~p~v~~~~~~~~~~~~~~~~ip~~g~~ 287 (428)
T PRK10157 215 SPTDGLMGGGFLYTN-ENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQ------HPAVAPLIAGGKLVEYSAHVVPEAGIN 287 (428)
T ss_pred CCCCCCcCceeEEEc-CCeEEEEEEEehHHhcccCCCHHHHHHHHHh------CchHHHHhCCCeEHHHHhhHhhcCCcc
Confidence 21 1 2466653 44555555432111 0111122233332221 112222110000 000111223221 1
Q ss_pred cCCCCCCCcEEEecccCCCCCC--CCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChh
Q 040732 358 PAAPKTTPGALLLGDAFNMRHP--LTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVA 426 (541)
Q Consensus 358 ~~~~~~~~~vvliGDAah~~~P--~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~ 426 (541)
..+....+|++++||||..++| ++|+|++.|+.++..+|+.+.+....++ .....|..|++.-+...
T Consensus 288 ~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~--~s~~~l~~Y~~~l~~~~ 356 (428)
T PRK10157 288 MLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDD--FSKQKLAEYRQHLESGP 356 (428)
T ss_pred cCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCC--cchhhHHHHHHHHHHhH
Confidence 2234567899999999999998 5999999999999999998877533222 22457888887666543
No 58
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.93 E-value=2.4e-24 Score=225.77 Aligned_cols=336 Identities=22% Similarity=0.222 Sum_probs=207.1
Q ss_pred cEEEECCChHHHHHHHHHhhCC---CcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 68 DVIVVGAGVAGAALAHTLGTDG---RRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G---~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
||+|||||+||.++|..|++.+ ++|+|||+.. .+. ..+||...|.....++.+|+.+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~-~~~------------------~~vGe~~~p~~~~~~~~lgi~e~ 61 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD-IPR------------------IGVGESTLPSLRPFLRRLGIDEA 61 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS-S---------------------SSEEE--THHHHCHHHHT--HH
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC-CCC------------------CCccccchHHHHHHHHHcCCChH
Confidence 7999999999999999999998 8999999985 444 68899999999999999999876
Q ss_pred --HhhccceeeeeeEEEE-C--CeeeeecCCC---------------------------------------------CC-
Q 040732 145 --VEEIDAHPVVGYALFK-D--GKITKTPYPL---------------------------------------------GN- 173 (541)
Q Consensus 145 --~~~~~~~~~~g~~~~~-~--g~~~~~~~~~---------------------------------------------~~- 173 (541)
+.+.+.....|+.+.. . +.....+|.. ..
T Consensus 62 ~~~~~~~~~~k~g~~f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (454)
T PF04820_consen 62 DFMRACDATFKLGIRFVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDF 141 (454)
T ss_dssp HHCHHCT-EEESEEEEESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTS
T ss_pred HHHHHhCCeEeccEEeeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccc
Confidence 6665555555655521 1 1111112210 00
Q ss_pred CCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeee-CCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCccccc
Q 040732 174 FQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEE-NGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRS 252 (541)
Q Consensus 174 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~-~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~ 252 (541)
......++.++|.+|.+.|++.+.+. ||++++++|+++..+ ++.+.+|+ .++|++ ++||++|+|+|..|.+.+.
T Consensus 142 ~~~~~~ayhlDR~~fd~~L~~~A~~~-Gv~~~~g~V~~v~~~~~g~i~~v~--~~~g~~--i~ad~~IDASG~~s~L~~~ 216 (454)
T PF04820_consen 142 LSPFNYAYHLDRAKFDQFLRRHAEER-GVEVIEGTVVDVELDEDGRITAVR--LDDGRT--IEADFFIDASGRRSLLARK 216 (454)
T ss_dssp TBTSS-EEEEEHHHHHHHHHHHHHHT-T-EEEET-EEEEEE-TTSEEEEEE--ETTSEE--EEESEEEE-SGGG-CCCCC
T ss_pred cCCCCeeEEEeHHHHHHHHHHHHhcC-CCEEEeCEEEEEEEcCCCCEEEEE--ECCCCE--EEEeEEEECCCccchhhHh
Confidence 01123578999999999999999998 999999998887765 45555454 566765 5699999999999988776
Q ss_pred c-cCCCccccc---ceEEEEEe--ecCCCCCCeeEEEEcCCCcEEEEEccCCceEEEEEecCCCCCCCCCchhHHHHHHH
Q 040732 253 L-CNPKVDIPS---CFVGMALE--NCQLPVPNHGHVVLTDPSPILFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKT 326 (541)
Q Consensus 253 l-~~~~~~~~~---~~~g~~~~--~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 326 (541)
. ..+...... ...++... ... +.+........+.|++|.+|+.++... .+.+. ... .++++..+.+.+
T Consensus 217 ~L~~~~~~~~~~L~~d~av~~~~~~~~-~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s-~~~---~s~~~A~~~l~~ 290 (454)
T PF04820_consen 217 ALKVGFRDWSDWLPNDRAVAVQVPNED-PPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYS-SDF---ISDDEAEAELLA 290 (454)
T ss_dssp CT-EEEEEETTTCEEEEEEEEEEE-SS-CTTSSEEEEEESSEEEEEEEESSEEEE-EEEEE-TTT---SHHHHHHHHHHH
T ss_pred hhcCCCccccccccccEEEEEecCcCC-CCCCceeEEecCCceEEEccCCCcceE-EEEec-ccc---CCHHHHHHHHHH
Confidence 3 322222221 22333332 222 223334455567799999999998766 33333 111 122222222222
Q ss_pred hcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCC
Q 040732 327 KVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFH 406 (541)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~ 406 (541)
.+. ....... ...+.......+...+|+++|||||..++|+.++|+.+++..+..|++.|.... .
T Consensus 291 ~l~------------~~~~~~~-~~i~~~~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~~--~ 355 (454)
T PF04820_consen 291 YLG------------GSPEAEP-RHIRFRSGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDDD--F 355 (454)
T ss_dssp HHT------------CHCTTSC-EEEE-S-EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCTT--C
T ss_pred hcc------------hhhhcch-hhhcccccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccCC--C
Confidence 211 0001011 222222222455667899999999999999999999999999999999886531 1
Q ss_pred ChHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhcCCChHHHHHHH
Q 040732 407 DAASLNQYLESFYTLRKPVASTINTLANSAYQVFSASSDEAREVMR 452 (541)
Q Consensus 407 ~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l~~~~~~~~~~~~~~lr 452 (541)
+ +.+++.|++..+.....+..+....|.+-...+.+.++..|
T Consensus 356 ~----~~~~~~Yn~~~~~~~~~~~~fi~~hY~~~~r~ds~FW~~~~ 397 (454)
T PF04820_consen 356 S----PAALDRYNRRMRREYERIRDFISLHYQLSRRRDSPFWRARR 397 (454)
T ss_dssp C----HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHS-SSHHHHHHC
T ss_pred C----HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHHhcc
Confidence 1 45889999999999999998988888875544445544433
No 59
>PLN02697 lycopene epsilon cyclase
Probab=99.93 E-value=5.3e-23 Score=217.40 Aligned_cols=342 Identities=20% Similarity=0.176 Sum_probs=204.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
...+||+||||||||+++|..|++.|++|+|+|+...... .. .++ ...++.+|+.+
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~-------------------n~--GvW---~~~l~~lgl~~ 161 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-------------------NY--GVW---EDEFKDLGLED 161 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC-------------------cc--ccc---hhHHHhcCcHH
Confidence 3468999999999999999999999999999998632111 01 111 13467788876
Q ss_pred hHhhccceeeeeeEEEEC-CeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEE
Q 040732 144 CVEEIDAHPVVGYALFKD-GKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGV 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV 222 (541)
++.. ...+..++.+ +...... ... ..++|..|.+.|.+.+.+. ++++..++|+++..+++.+..+
T Consensus 162 ~i~~----~w~~~~v~~~~~~~~~~~--------~~Y-g~V~R~~L~~~Ll~~a~~~-GV~~~~~~V~~I~~~~~~~~vv 227 (529)
T PLN02697 162 CIEH----VWRDTIVYLDDDKPIMIG--------RAY-GRVSRTLLHEELLRRCVES-GVSYLSSKVDRITEASDGLRLV 227 (529)
T ss_pred HHHh----hcCCcEEEecCCceeecc--------Ccc-cEEcHHHHHHHHHHHHHhc-CCEEEeeEEEEEEEcCCcEEEE
Confidence 6553 1122233332 2221111 111 2489999999999999876 7888777799988765543212
Q ss_pred EEEcCCCcEEEEEcCEEEEecCCCCcccccccCCC--c-ccccceEEEEEeecCCCCCCeeEEEEc--------------
Q 040732 223 HYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPK--V-DIPSCFVGMALENCQLPVPNHGHVVLT-------------- 285 (541)
Q Consensus 223 ~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~--~-~~~~~~~g~~~~~~~~p~~~~~~~~~~-------------- 285 (541)
...+|.+ +.|++||+|||.+|. +.+..+. + .......|+.+.-...|.+....+++.
T Consensus 228 --~~~dG~~--i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~ 301 (529)
T PLN02697 228 --ACEDGRV--IPCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEA 301 (529)
T ss_pred --EEcCCcE--EECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccccccccccccccC
Confidence 2456654 569999999999993 2222111 1 112345566554322222222123322
Q ss_pred -CCCcEEEEEccCCceEE-EEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCC
Q 040732 286 -DPSPILFYPISSSEVRC-LVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKT 363 (541)
Q Consensus 286 -~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (541)
.++.+|++|.++++..+ ...+. ..+..+.+.+++++.+++...- +. ...+...+...+|..... +. .
T Consensus 302 ~~p~FlYvlP~~~~~~~VE~T~l~---~~~~l~~~~l~~~L~~~l~~~G---i~---~~~i~~~E~g~iPm~g~~-~~-~ 370 (529)
T PLN02697 302 EYPTFLYAMPMSSTRVFFEETCLA---SKDAMPFDLLKKRLMSRLETMG---IR---ILKTYEEEWSYIPVGGSL-PN-T 370 (529)
T ss_pred CCceEEEEeecCCCeEEEEEeeec---cCCCCCHHHHHHHHHHHHHhCC---CC---cceEEEEEeeeecCCCCC-cc-c
Confidence 12468999999997665 22221 1223344566666665443211 10 011112233345554322 22 2
Q ss_pred CCcEEEecccCCCCCCCCCcchhHHHhhHHHHHHhccccCCCCC-------hHHHHHHHHHHHHHhcChhHHHHHHHHHH
Q 040732 364 TPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHD-------AASLNQYLESFYTLRKPVASTINTLANSA 436 (541)
Q Consensus 364 ~~~vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~-------~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l 436 (541)
..+++++||||+++||.+|.|+..++.+|..+|+.+++....++ .+....+++.|+..+.........+....
T Consensus 371 ~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g 450 (529)
T PLN02697 371 EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFG 450 (529)
T ss_pred CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999988643332 12456788989887777665555555444
Q ss_pred HhhhcCCChHHHHHHHHHHHHHhhcCC
Q 040732 437 YQVFSASSDEAREVMRQASVDYLGLGG 463 (541)
Q Consensus 437 ~~~~~~~~~~~~~~lr~~~~~~~~~~~ 463 (541)
..++..-++. .+++.+-..+.+..
T Consensus 451 ~~~l~~l~~~---~~~~ff~~ff~L~~ 474 (529)
T PLN02697 451 LALILQLDTE---GIRTFFVTFFRLPK 474 (529)
T ss_pred HHHHHCCCHH---HHHHHHHHHHCCCH
Confidence 4555444332 34444444444443
No 60
>PLN02463 lycopene beta cyclase
Probab=99.91 E-value=3e-21 Score=201.23 Aligned_cols=287 Identities=19% Similarity=0.186 Sum_probs=173.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
...+||+||||||||+++|..|+++|++|+|+|+.+.... . ...+ . ..+.++.+|+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~---p--------------~~~g--~---w~~~l~~lgl~~ 83 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW---P--------------NNYG--V---WVDEFEALGLLD 83 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh---c--------------cccc--h---HHHHHHHCCcHH
Confidence 4568999999999999999999999999999999753211 0 0000 0 124577888887
Q ss_pred hHhhccceeeeeeEEEE-CCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEE
Q 040732 144 CVEEIDAHPVVGYALFK-DGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGV 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV 222 (541)
++... + ....++. ++..... ... ...++|.+|.+.|.+.+.+. +++++.++|+++..+++. +
T Consensus 84 ~l~~~-w---~~~~v~~~~~~~~~~--------~~~-y~~V~R~~L~~~Ll~~~~~~-GV~~~~~~V~~I~~~~~~---~ 146 (447)
T PLN02463 84 CLDTT-W---PGAVVYIDDGKKKDL--------DRP-YGRVNRKKLKSKMLERCIAN-GVQFHQAKVKKVVHEESK---S 146 (447)
T ss_pred HHHhh-C---CCcEEEEeCCCCccc--------cCc-ceeEEHHHHHHHHHHHHhhc-CCEEEeeEEEEEEEcCCe---E
Confidence 76541 1 1222222 2211111 111 22479999999999999876 899987789998877653 4
Q ss_pred EEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEeecCCCCCCeeEEE-------Ec----------
Q 040732 223 HYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENCQLPVPNHGHVV-------LT---------- 285 (541)
Q Consensus 223 ~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~-------~~---------- 285 (541)
.+++++|++ ++||+||+|||.+|.+++.-. +.........|.+.+....|.+....++ .+
T Consensus 147 ~V~~~dG~~--i~A~lVI~AdG~~s~l~~~~~-~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~ 223 (447)
T PLN02463 147 LVVCDDGVK--IQASLVLDATGFSRCLVQYDK-PFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNS 223 (447)
T ss_pred EEEECCCCE--EEcCEEEECcCCCcCccCCCC-CCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccC
Confidence 455677764 559999999999998865321 1111112344544432212211111111 00
Q ss_pred -CCCcEEEEEccCCceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCC
Q 040732 286 -DPSPILFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTT 364 (541)
Q Consensus 286 -~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (541)
.++.+|++|.+++++.+-.+.- ...+..+.+++++.+.+++... .-.. ..+...+...+|.... .+...
T Consensus 224 ~~p~FlY~~P~~~~~~~vEeT~l--~s~~~~~~~~lk~~L~~~l~~~-Gi~~-----~~i~~~E~~~IPmg~~--~~~~~ 293 (447)
T PLN02463 224 KLPTFLYAMPFSSNRIFLEETSL--VARPGLPMDDIQERMVARLRHL-GIKV-----KSVEEDEKCVIPMGGP--LPVIP 293 (447)
T ss_pred CCCceEEEEecCCCeEEEEeeee--ecCCCCCHHHHHHHHHHHHHHC-CCCc-----ceeeeeeeeEeeCCCC--CCCCC
Confidence 0357899999999744333211 0112233455666555543211 0000 0111122233454332 22345
Q ss_pred CcEEEecccCCCCCCCCCcchhHHHhhHHHHHHhcccc
Q 040732 365 PGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPL 402 (541)
Q Consensus 365 ~~vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~ 402 (541)
+|++++||||.++||.+|.|+..++..+..+++.+.+.
T Consensus 294 ~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~ 331 (447)
T PLN02463 294 QRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEY 331 (447)
T ss_pred CCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999988775
No 61
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.90 E-value=3e-21 Score=197.86 Aligned_cols=304 Identities=17% Similarity=0.154 Sum_probs=171.6
Q ss_pred cEEEECCChHHHHHHHHHhhC--CCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 68 DVIVVGAGVAGAALAHTLGTD--GRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~--G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
||+|||||+||+++|+.|++. |++|+|+|+.+... ++.+.... +..+.+... ..+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~----~~~tw~~~----------~~~~~~~~~---------~~~ 57 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIG----GNHTWSFF----------DSDLSDAQH---------AWL 57 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC----Ccccceec----------ccccchhhh---------hhh
Confidence 899999999999999999987 99999999986322 22221110 000110000 001
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeC-eEEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEG-TVTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~-~v~~l~~~~~~v~gV~v 224 (541)
+........++.++.++...... .....+++.+|.+.|.+.+.. + ++.+ +|+++ +++ +|++
T Consensus 58 ~~~v~~~W~~~~v~~~~~~~~l~---------~~Y~~I~r~~f~~~l~~~l~~--~--i~~~~~V~~v--~~~---~v~l 119 (370)
T TIGR01789 58 ADLVQTDWPGYEVRFPKYRRKLK---------TAYRSMTSTRFHEGLLQAFPE--G--VILGRKAVGL--DAD---GVDL 119 (370)
T ss_pred hhhheEeCCCCEEECcchhhhcC---------CCceEEEHHHHHHHHHHhhcc--c--EEecCEEEEE--eCC---EEEE
Confidence 11111222233333322211111 122578999999999876643 3 3444 57777 233 3555
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEeecCCCCCCeeEEE----Ec-CC--CcEEEEEccC
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENCQLPVPNHGHVV----LT-DP--SPILFYPISS 297 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~----~~-~~--~~~~~~p~~~ 297 (541)
.+|++ ++|++||+|||.+|.-... ..-.++.|+.... ..|.+....++ .. .+ ..++++|.++
T Consensus 120 --~dg~~--~~A~~VI~A~G~~s~~~~~------~~~Q~f~G~~~r~-~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~ 188 (370)
T TIGR01789 120 --APGTR--INARSVIDCRGFKPSAHLK------GGFQVFLGREMRL-QEPHGLENPIIMDATVDQLAGYRFVYVLPLGS 188 (370)
T ss_pred --CCCCE--EEeeEEEECCCCCCCcccc------ceeeEEEEEEEEE-cCCCCCCccEEEeeeccCCCCceEEEECcCCC
Confidence 56775 4599999999999752221 1224567776653 23332221121 11 12 3466789999
Q ss_pred CceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccc---cCCCCCCCcEEEecccC
Q 040732 298 SEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSM---PAAPKTTPGALLLGDAF 374 (541)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~vvliGDAa 374 (541)
++..+--+.. .+.+.++.++.++.+.++.... ..... +.+. .+...+|+... ++.....++++++||||
T Consensus 189 ~~~lvE~T~~--s~~~~l~~~~l~~~l~~~~~~~-g~~~~----~i~~-~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AA 260 (370)
T TIGR01789 189 HDLLIEDTYY--ADDPLLDRNALSQRIDQYARAN-GWQNG----TPVR-HEQGVLPVLLGGDFSAYQDEVRIVAIAGLRA 260 (370)
T ss_pred CeEEEEEEec--cCCCCCCHHHHHHHHHHHHHHh-CCCce----EEEE-eeeeEEeeecCCCcccccccCCceeeeeccc
Confidence 9765543322 2224455666666666543211 00000 1111 12234554321 11112356699999999
Q ss_pred CCCCCCCCcchhHHHhhHHHHHHhccccCCCCChHHHHHHHHHHHHHhcChhHHHHHHHHHH
Q 040732 375 NMRHPLTGGGMTVALSDVVVLRNLIKPLQDFHDAASLNQYLESFYTLRKPVASTINTLANSA 436 (541)
Q Consensus 375 h~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~i~~ls~~l 436 (541)
|++||.+|||++.+++||..|++.+... ...+.+++..|...|+++.....-+-..+
T Consensus 261 g~~~P~tGyg~~~a~~~a~~la~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 317 (370)
T TIGR01789 261 GLTHPTTGYSLPVAVENADALAAQPDLS-----SEQLAAFIDSRARRHWSKTGYYRLLNRML 317 (370)
T ss_pred ccccccccccHHHHHHHHHHHHhccCcC-----ccchhhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999998511 11344567889888887776554444433
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.86 E-value=5.5e-19 Score=181.89 Aligned_cols=280 Identities=21% Similarity=0.207 Sum_probs=171.8
Q ss_pred cEEEECCChHHHHHHHHH--hhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 68 DVIVVGAGVAGAALAHTL--GTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~L--a~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
|||||||||||+++|..| ++.|.+|+|||+.+..+- ...++.. ... ..++..+.+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~-~~~~tW~----------------~~~------~~~~~~~~~ 57 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPW-PNDRTWC----------------FWE------KDLGPLDSL 57 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccc-cCCcccc----------------ccc------ccccchHHH
Confidence 899999999999999999 788999999999875411 0111110 000 111111111
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGVHYK 225 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV~v~ 225 (541)
. .....+..++..+...... ......+++.+|.+.|.+.+. .+++.+...+|+++...++ ++.+.
T Consensus 58 v---~~~w~~~~v~~~~~~~~~~--------~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~---~~~v~ 122 (374)
T PF05834_consen 58 V---SHRWSGWRVYFPDGSRILI--------DYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGD---GVLVV 122 (374)
T ss_pred H---heecCceEEEeCCCceEEc--------ccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCc---eEEEE
Confidence 1 1123344454443322111 012347999999999999998 5578877778999888776 45566
Q ss_pred cCCCcEEEEEcCEEEEecCCCCcccccccCCCcccccceEEEEEeecCCC-CCCeeEE---EE----cCCCcEEEEEccC
Q 040732 226 TKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDIPSCFVGMALENCQLP-VPNHGHV---VL----TDPSPILFYPISS 297 (541)
Q Consensus 226 ~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~~~~~~g~~~~~~~~p-~~~~~~~---~~----~~~~~~~~~p~~~ 297 (541)
+++|++ ++|++||+|+|..+...+.. ...++.|+.+.....+ +++...+ .. .....+|++|.++
T Consensus 123 ~~~g~~--i~a~~VvDa~g~~~~~~~~~------~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~ 194 (374)
T PF05834_consen 123 LADGRT--IRARVVVDARGPSSPKARPL------GLQHFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSE 194 (374)
T ss_pred ECCCCE--EEeeEEEECCCccccccccc------ccceeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCC
Confidence 778885 55999999999776622221 2245777776522211 2222221 11 1235688999999
Q ss_pred CceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHHhhhhcCCeeeccCccccCCCCCCCcEEEecccCCCC
Q 040732 298 SEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFISKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMR 377 (541)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~ 377 (541)
++..+-.++-.. .+..+.++.++.+.+++...-. .. ..+...+...+|.......+...++++.+|+|++.+
T Consensus 195 ~~alvE~T~fs~--~~~~~~~~~~~~l~~~l~~~g~-~~-----~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v 266 (374)
T PF05834_consen 195 DRALVEETSFSP--RPALPEEELKARLRRYLERLGI-DD-----YEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMV 266 (374)
T ss_pred CeEEEEEEEEcC--CCCCCHHHHHHHHHHHHHHcCC-Cc-----eeEEEeecceeecccCCCccccCCCeeeEEccccCC
Confidence 976554444311 2334455555555554322100 00 011112334566644444455567799999999999
Q ss_pred CCCCCcchhHHHhhHHHHHHhccc
Q 040732 378 HPLTGGGMTVALSDVVVLRNLIKP 401 (541)
Q Consensus 378 ~P~~GqG~~~al~Da~~La~~L~~ 401 (541)
+|.||.++..+++.+..+++.|..
T Consensus 267 ~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 267 KPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 63
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.57 E-value=1.8e-13 Score=146.38 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSL 253 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l 253 (541)
.+...|.+.+++. +++++.++ |+++..+++++.||.+...+|+..++.++.||.|+|.++...+++
T Consensus 191 ~l~~~L~~~~~~~-gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 191 YLVDGLLKNVQER-KIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred HHHHHHHHHHHHc-CCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence 4778888888776 89999887 999988788899998877666666788999999999998754443
No 64
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.56 E-value=6.7e-14 Score=135.87 Aligned_cols=150 Identities=20% Similarity=0.180 Sum_probs=101.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
..++||+||||||+|+++|+.|++.|++|+|+||.+.......+.... .-...++......|+++|+..
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~-----------~~~~~v~~~~~~~l~~~gv~~ 91 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGML-----------FNKIVVQEEADEILDEFGIRY 91 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccc-----------cccccchHHHHHHHHHCCCCc
Confidence 356899999999999999999999999999999987543311110000 000122333445555555421
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCC-eEEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENG-IVKG 221 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~-~v~g 221 (541)
. ...+ ..+.+++.++...|.+.+.+. +++++.++ |+++..+++ ++.|
T Consensus 92 ~-------------~~~~-----------------g~~~vd~~~l~~~L~~~A~~~-Gv~I~~~t~V~dl~~~~~g~V~G 140 (257)
T PRK04176 92 K-------------EVED-----------------GLYVADSVEAAAKLAAAAIDA-GAKIFNGVSVEDVILREDPRVAG 140 (257)
T ss_pred e-------------eecC-----------------cceeccHHHHHHHHHHHHHHc-CCEEEcCceeceeeEeCCCcEEE
Confidence 0 0000 123467788999999999887 89999886 999887655 7888
Q ss_pred EEEEcC----CC---cEEEEEcCEEEEecCCCCcccccccC
Q 040732 222 VHYKTK----DG---QEHKSYAPLTIVCDGGFSNLRRSLCN 255 (541)
Q Consensus 222 V~v~~~----~g---~~~~v~a~lvV~AdG~~S~vR~~l~~ 255 (541)
|.+... +| +..+++|+.||+|+|.+|.+.+.+..
T Consensus 141 vv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~ 181 (257)
T PRK04176 141 VVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLAR 181 (257)
T ss_pred EEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHH
Confidence 776421 12 34568899999999999999887743
No 65
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.54 E-value=1.2e-12 Score=128.18 Aligned_cols=307 Identities=21% Similarity=0.250 Sum_probs=174.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhh------CCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHH
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGT------DGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKL 136 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~------~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l 136 (541)
....+||+|||||||||++|+.|.+ ..++|+|+||....... ...|..+.|.+++.|
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Ggh-----------------tlSGaviep~aldEL 135 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGH-----------------TLSGAVIEPGALDEL 135 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCc-----------------eecceeeccchhhhh
Confidence 3567999999999999999999875 35799999999865541 344566778776544
Q ss_pred HHCCchhhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeee-
Q 040732 137 VELGLDDCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFE- 214 (541)
Q Consensus 137 ~~lgl~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~- 214 (541)
+--|.........++..-.+..-.....++.|....-.+...|.+.-+++.++|-+.+.+. |+++.-+- +.++..
T Consensus 136 --~P~wke~~apl~t~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~-GvEiyPg~aaSevly~ 212 (621)
T KOG2415|consen 136 --LPDWKEDGAPLNTPVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEEL-GVEIYPGFAASEVLYD 212 (621)
T ss_pred --CcchhhcCCcccccccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhh-CceeccccchhheeEc
Confidence 1111111100011221111111111122333322111223367888899999999999998 89999886 777765
Q ss_pred eCCeEEEEEEEc----CCCcE-------EEEEcCEEEEecCCCCcccccccCCCc---ccccceEEEEEe-ecCCCCC--
Q 040732 215 ENGIVKGVHYKT----KDGQE-------HKSYAPLTIVCDGGFSNLRRSLCNPKV---DIPSCFVGMALE-NCQLPVP-- 277 (541)
Q Consensus 215 ~~~~v~gV~v~~----~~g~~-------~~v~a~lvV~AdG~~S~vR~~l~~~~~---~~~~~~~g~~~~-~~~~p~~-- 277 (541)
+++.|.||...+ ++|.. .++.|+..|-|.|++..+-+++-.+.. .......|+-++ -..+++.
T Consensus 213 edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~ 292 (621)
T KOG2415|consen 213 EDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENH 292 (621)
T ss_pred CCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhc
Confidence 467788876542 34432 246699999999999988776632111 111111222111 1111111
Q ss_pred CeeEEE--Ec----CC--CcEEEEEccCCceEEEEEecCCCCCCCCCchhHHHHHHHhcCCCCChhhHHHHH--------
Q 040732 278 NHGHVV--LT----DP--SPILFYPISSSEVRCLVDVPAGQKLPSIANGEMAKYLKTKVAPQIPDELRDAFI-------- 341 (541)
Q Consensus 278 ~~~~~~--~~----~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-------- 341 (541)
+.+.+. ++ .. +-.++|.+++..+.+.+.+..+-..|.+++-.--+.++ -.|. +.+.+.
T Consensus 293 ~pG~v~HT~GwPl~~~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K--~hP~----i~~vleGgk~i~Yg 366 (621)
T KOG2415|consen 293 NPGEVAHTLGWPLDNDTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMK--HHPS----ISKVLEGGKRIAYG 366 (621)
T ss_pred CCcceeeeccCcccCCccCceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhh--cCcc----hhhhhcCcceeeeh
Confidence 111111 11 11 34678888888777665544333344444322111122 1222 222211
Q ss_pred -hhhhcCCeeeccCccccCCCCCCCcEEEecccCCCCCCCCCcchhHHHhhHHHHHHhcccc
Q 040732 342 -SKVEKGSIRTATNRSMPAAPKTTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRNLIKPL 402 (541)
Q Consensus 342 -~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAah~~~P~~GqG~~~al~Da~~La~~L~~~ 402 (541)
.++.++.+.++| ...-++=+|||=+|+.++=---.|..+||.+....|+.+-+.
T Consensus 367 ARaLNEGGfQsiP-------kl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~a 421 (621)
T KOG2415|consen 367 ARALNEGGFQSIP-------KLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEA 421 (621)
T ss_pred hhhhccCCcccCc-------ccccCCceEeecccccccccccccchhhhhcchhHHHHHHHH
Confidence 122333333333 222345578999999999889999999999999999987654
No 66
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.53 E-value=1.6e-13 Score=132.73 Aligned_cols=147 Identities=23% Similarity=0.274 Sum_probs=99.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
.++||+||||||+|+++|+.|+++|.+|+|+||.........+.... .....++......++++|+..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~-----------~~~~~~~~~~~~~l~~~gi~~- 87 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGML-----------FSKIVVEKPAHEILDEFGIRY- 87 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcc-----------eecccccchHHHHHHHCCCCe-
Confidence 57899999999999999999999999999999997543311110000 000112333344454444320
Q ss_pred HhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCC--eEEE
Q 040732 145 VEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENG--IVKG 221 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~--~v~g 221 (541)
...+. ..+..++.++.+.|.+.+.+. +++++.++ |+++..+++ ++.|
T Consensus 88 --------------~~~~~---------------g~~~~~~~el~~~L~~~a~e~-GV~I~~~t~V~dli~~~~~~~V~G 137 (254)
T TIGR00292 88 --------------EDEGD---------------GYVVADSAEFISTLASKALQA-GAKIFNGTSVEDLITRDDTVGVAG 137 (254)
T ss_pred --------------eeccC---------------ceEEeeHHHHHHHHHHHHHHc-CCEEECCcEEEEEEEeCCCCceEE
Confidence 00000 013356778999999999887 79999887 999987766 6888
Q ss_pred EEEEcC----CC---cEEEEEcCEEEEecCCCCcccccc
Q 040732 222 VHYKTK----DG---QEHKSYAPLTIVCDGGFSNLRRSL 253 (541)
Q Consensus 222 V~v~~~----~g---~~~~v~a~lvV~AdG~~S~vR~~l 253 (541)
|.+... +| +..+++|++||+|||..|.+.+.+
T Consensus 138 Vv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 138 VVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred EEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 876321 12 345688999999999999887766
No 67
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.51 E-value=5.5e-14 Score=141.80 Aligned_cols=237 Identities=23% Similarity=0.314 Sum_probs=130.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeee-----------ccccccccccccccCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIE-----------RDLMEPNRIVGELLQPGG 132 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~g~~l~~~~ 132 (541)
.+++||+|||||.+|..+|+..+-+|++|.++|+++ +.+++++++++++| +.++++.+.+-++|+.+.
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~D-F~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~ 143 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGD-FASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERA 143 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEeccc-ccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 456999999999999999999999999999999987 56678889988877 222223333333333222
Q ss_pred hHHHHHCCchhhHhhcc--cee----------eeeeEEEE--CC-eeeeec-----------CCCCCCCCCccc------
Q 040732 133 YLKLVELGLDDCVEEID--AHP----------VVGYALFK--DG-KITKTP-----------YPLGNFQANVAG------ 180 (541)
Q Consensus 133 ~~~l~~lgl~~~~~~~~--~~~----------~~g~~~~~--~g-~~~~~~-----------~~~~~~~~~~~~------ 180 (541)
... .+.+.+...- ..| ..|+.+++ .| +..+.. ||.-.. ....|
T Consensus 144 ~ll----e~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~-~~L~Ga~VYyD 218 (680)
T KOG0042|consen 144 NLL----EIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRK-DNLKGAMVYYD 218 (680)
T ss_pred HHh----hcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccc-cCceeEEEEec
Confidence 110 0000000000 000 11222222 11 111111 111000 01111
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeee-CCeEEEEEEEcC-CCcEEEEEcCEEEEecCCCCc-ccccccCCC
Q 040732 181 RSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEE-NGIVKGVHYKTK-DGQEHKSYAPLTIVCDGGFSN-LRRSLCNPK 257 (541)
Q Consensus 181 ~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~-~~~v~gV~v~~~-~g~~~~v~a~lvV~AdG~~S~-vR~~l~~~~ 257 (541)
...+..++.-.+.-.+.+++.....+-.|.++..+ ++++.|+++++. .|++++|+|+.||+|+|.+|- +|++-....
T Consensus 219 GQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~ 298 (680)
T KOG0042|consen 219 GQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDEDA 298 (680)
T ss_pred CCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhccccc
Confidence 13445567777777777774344444458888765 466889998874 799999999999999999984 666554322
Q ss_pred cccccceEEE--EEeecCCCCCCeeEE--EEcCCCcEEEEEccCCceEEEEEec
Q 040732 258 VDIPSCFVGM--ALENCQLPVPNHGHV--VLTDPSPILFYPISSSEVRCLVDVP 307 (541)
Q Consensus 258 ~~~~~~~~g~--~~~~~~~p~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~ 307 (541)
..--....|. ++-....|. +.+-+ --+++.-++++|..+.++.-.-+.|
T Consensus 299 ~~i~~pSsGvHIVlP~yY~P~-~mGlldP~TsDgRViFflPWqg~TIaGTTD~p 351 (680)
T KOG0042|consen 299 KPICVPSSGVHIVLPGYYCPE-NMGLLDPKTSDGRVIFFLPWQGKTIAGTTDIP 351 (680)
T ss_pred CceeccCCceeEEcccccCCc-ccccccCCCCCCcEEEEeccCCceeeccCCCC
Confidence 2211222232 222222222 22211 1124455777888887543333444
No 68
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.49 E-value=2.7e-12 Score=133.52 Aligned_cols=225 Identities=18% Similarity=0.205 Sum_probs=133.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccc--c--ccccccccccCchhhHHHHHC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDL--M--EPNRIVGELLQPGGYLKLVEL 139 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~--~--~~~~~~g~~l~~~~~~~l~~l 139 (541)
+..+||+|||||+.|+.+|..++.+|++|+++|+.+ ...++++++.+++|-.. + .+.+.+.|.+..+.+ |.+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D-~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~v--L~~- 85 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGD-LASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREV--LLR- 85 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCc-ccCcccCccccCccchhhhhhhcchHHHHHHHHHHHH--HHH-
Confidence 378999999999999999999999999999999986 66678899998887221 1 111222233332222 111
Q ss_pred CchhhHhhccceeeeeeEE-----------------EE--CCe-------------eeeecCCC-CCC----CCCcccee
Q 040732 140 GLDDCVEEIDAHPVVGYAL-----------------FK--DGK-------------ITKTPYPL-GNF----QANVAGRS 182 (541)
Q Consensus 140 gl~~~~~~~~~~~~~g~~~-----------------~~--~g~-------------~~~~~~~~-~~~----~~~~~~~~ 182 (541)
+......+...+.. ++ .|. ......|. ... ........
T Consensus 86 -----~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~ 160 (532)
T COG0578 86 -----IAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGV 160 (532)
T ss_pred -----hCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccce
Confidence 00000001000000 00 010 00000010 000 00112345
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEEEEEcC-CCcEEEEEcCEEEEecCCCCc-ccccccCCC---
Q 040732 183 FHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGVHYKTK-DGQEHKSYAPLTIVCDGGFSN-LRRSLCNPK--- 257 (541)
Q Consensus 183 ~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV~v~~~-~g~~~~v~a~lvV~AdG~~S~-vR~~l~~~~--- 257 (541)
++..+|.......+.+.+...+.+..|+++..+++ ++||++.+. +|++++++|+.||+|+|.|+- +++..+...
T Consensus 161 vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~ 239 (532)
T COG0578 161 VDDARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPH 239 (532)
T ss_pred echHHHHHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCC
Confidence 77788888888888888444444445999999888 999999874 588899999999999999985 566664322
Q ss_pred -cccccceEEEEEeecCCCCCCeeEEEEc-CCCcEEEEEccCCc
Q 040732 258 -VDIPSCFVGMALENCQLPVPNHGHVVLT-DPSPILFYPISSSE 299 (541)
Q Consensus 258 -~~~~~~~~g~~~~~~~~p~~~~~~~~~~-~~~~~~~~p~~~~~ 299 (541)
.-.++.-+-+++.. .+|.+........ ++..++++|..+..
T Consensus 240 ~~vr~skGsHlVv~~-~~~~~~a~~~~~~~d~r~~f~iP~~~~~ 282 (532)
T COG0578 240 IGVRPSKGSHLVVDK-KFPINQAVINRCRKDGRIVFAIPYEGKT 282 (532)
T ss_pred ccceeccceEEEecc-cCCCCceEEeecCCCCceEEEecCCCCE
Confidence 12223333344433 4444433333333 56778889988874
No 69
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.47 E-value=1.1e-12 Score=119.51 Aligned_cols=146 Identities=25% Similarity=0.219 Sum_probs=94.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
.++||+||||||+|+++|+.|++.|++|+|+|+...+.....+... ..-...++..+...|+++|+.-.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~-----------lf~~iVVq~~a~~iL~elgi~y~ 84 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGM-----------LFNKIVVQEEADEILDELGIPYE 84 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CT-----------T---EEEETTTHHHHHHHT---E
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccccccc-----------ccchhhhhhhHHHHHHhCCceeE
Confidence 5689999999999999999999999999999998765442111100 00112366777788888876310
Q ss_pred HhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeC-CeEEEE
Q 040732 145 VEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEEN-GIVKGV 222 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~-~~v~gV 222 (541)
..+ ...+..+...+...|...+.+ +|++++... |+++...+ ++|.||
T Consensus 85 ---------------~~~---------------~g~~v~d~~~~~s~L~s~a~~-aGakifn~~~vEDvi~r~~~rV~Gv 133 (230)
T PF01946_consen 85 ---------------EYG---------------DGYYVADSVEFTSTLASKAID-AGAKIFNLTSVEDVIVREDDRVAGV 133 (230)
T ss_dssp ---------------E-S---------------SEEEES-HHHHHHHHHHHHHT-TTEEEEETEEEEEEEEECSCEEEEE
T ss_pred ---------------EeC---------------CeEEEEcHHHHHHHHHHHHhc-CCCEEEeeeeeeeeEEEcCCeEEEE
Confidence 000 012345666788888888877 599999997 99998766 789888
Q ss_pred EEEc----CCC---cEEEEEcCEEEEecCCCCccccc
Q 040732 223 HYKT----KDG---QEHKSYAPLTIVCDGGFSNLRRS 252 (541)
Q Consensus 223 ~v~~----~~g---~~~~v~a~lvV~AdG~~S~vR~~ 252 (541)
.+.- ..| .+.+++|++||+|||.-+.+-+.
T Consensus 134 ViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~ 170 (230)
T PF01946_consen 134 VINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVRV 170 (230)
T ss_dssp EEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTSH
T ss_pred EEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHHH
Confidence 7641 122 34678899999999999876443
No 70
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.46 E-value=5.4e-12 Score=135.12 Aligned_cols=184 Identities=21% Similarity=0.234 Sum_probs=99.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeecccc--cc--ccccccccCchh------
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLM--EP--NRIVGELLQPGG------ 132 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~--~~--~~~~g~~l~~~~------ 132 (541)
|+.++||+|||||++|+++|+.|+++|.+|+|+||.. ...++++++.+++|.... +. .+.+-+.+....
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d-~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~a 81 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD-LAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAA 81 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhC
Confidence 5667999999999999999999999999999999995 555666666665542110 00 000000000000
Q ss_pred -----------------h-HHHHHCCchhhHhhccc-eeeeeeEEEECCeeeeecCCCCC-C--CCCccceeecchHHHH
Q 040732 133 -----------------Y-LKLVELGLDDCVEEIDA-HPVVGYALFKDGKITKTPYPLGN-F--QANVAGRSFHNGRFIQ 190 (541)
Q Consensus 133 -----------------~-~~l~~lgl~~~~~~~~~-~~~~g~~~~~~g~~~~~~~~~~~-~--~~~~~~~~~~r~~l~~ 190 (541)
. ..+..+|+. ..+.... ............+.. ...+... . ........++..++..
T Consensus 82 p~l~~~~~~~~~~~~~~~~~~~~~~g~~-ly~~~~~~~~~~~~~~l~~~~~~-~~~~l~~~~~~a~~~~dg~vd~~rl~~ 159 (502)
T PRK13369 82 PHIIWPMRFVLPHSPEDRPAWLVRLGLF-LYDHLGGRKRLPGTRTLDLRRDP-EGAPLKPEYTKGFEYSDCWVDDARLVV 159 (502)
T ss_pred CccccccceEEecccccccHHHHHHHHH-HHHhccCCCCCCcceEechhhcc-ccCCchHhcCEEEEEcCeeecHHHHHH
Confidence 0 000000000 0000000 000000000000000 0001000 0 0001112366778888
Q ss_pred HHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc-ccc
Q 040732 191 RMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN-LRR 251 (541)
Q Consensus 191 ~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~-vR~ 251 (541)
.|.+.+.+. |+++..++ |+++..+++. .+|++.+..|++.+++|+.||+|+|.++. +.+
T Consensus 160 ~l~~~a~~~-Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 220 (502)
T PRK13369 160 LNALDAAER-GATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWVTDVIH 220 (502)
T ss_pred HHHHHHHHC-CCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccHHHHHh
Confidence 888888887 78888876 8998876553 45666555567677899999999999984 444
No 71
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.45 E-value=1.8e-12 Score=117.30 Aligned_cols=147 Identities=22% Similarity=0.251 Sum_probs=102.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
...||+||||||+||++|+.|++.|.+|+|+||+..+..+..+... -.-...++..+.+.|+++|+.-.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGm-----------lf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGM-----------LFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccccccc-----------ccceeeecchHHHHHHHhCCcce
Confidence 4579999999999999999999999999999999866553221111 00112355666777887776411
Q ss_pred HhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCC-eEEEE
Q 040732 145 VEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENG-IVKGV 222 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~-~v~gV 222 (541)
-.+ + .-+..+-..+...|...+.+. +++++.++ |+++...++ +|.||
T Consensus 98 ~~e-------------~-----------------g~~v~ds~e~~skl~~~a~~a-Gaki~n~~~veDvi~r~~~rVaGv 146 (262)
T COG1635 98 EEE-------------D-----------------GYYVADSAEFASKLAARALDA-GAKIFNGVSVEDVIVRDDPRVAGV 146 (262)
T ss_pred ecC-------------C-----------------ceEEecHHHHHHHHHHHHHhc-CceeeecceEEEEEEecCCceEEE
Confidence 000 0 113355566888888888887 69998887 999988776 78887
Q ss_pred EEEc----CCC---cEEEEEcCEEEEecCCCCcccccc
Q 040732 223 HYKT----KDG---QEHKSYAPLTIVCDGGFSNLRRSL 253 (541)
Q Consensus 223 ~v~~----~~g---~~~~v~a~lvV~AdG~~S~vR~~l 253 (541)
.+.= ..+ ...++++++||+|||.-..+-+.+
T Consensus 147 VvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 147 VVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred EEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHH
Confidence 7631 112 235678999999999987765444
No 72
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.45 E-value=9.6e-13 Score=130.07 Aligned_cols=157 Identities=24% Similarity=0.335 Sum_probs=101.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCC---CcCCcceeeeeccccccccccccccC--chhhH----H
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPD---RIDGRRVHVIERDLMEPNRIVGELLQ--PGGYL----K 135 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~l~--~~~~~----~ 135 (541)
+.+|||||||||||+.+|..++++|.+|+|+|+.+.... .+++.++++.|... ..+.++ |+.-+ +
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~------~~~~ls~~p~~~~fl~sa 75 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA------PDEFLSRNPGNGHFLKSA 75 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc------HHHHHHhCCCcchHHHHH
Confidence 568999999999999999999999999999999987655 34555555443221 111111 11111 2
Q ss_pred HHHCCchhhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeee
Q 040732 136 LVELGLDDCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFE 214 (541)
Q Consensus 136 l~~lgl~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~ 214 (541)
|.++.-+|- +++....|+.++...... -||.. ..-..+.+.|..++++. +|+++..+ |.++..
T Consensus 76 l~~ft~~d~---i~~~e~~Gi~~~e~~~Gr--~Fp~s----------dkA~~Iv~~ll~~~~~~-gV~i~~~~~v~~v~~ 139 (408)
T COG2081 76 LARFTPEDF---IDWVEGLGIALKEEDLGR--MFPDS----------DKASPIVDALLKELEAL-GVTIRTRSRVSSVEK 139 (408)
T ss_pred HHhCCHHHH---HHHHHhcCCeeEEccCce--ecCCc----------cchHHHHHHHHHHHHHc-CcEEEecceEEeEEe
Confidence 222222222 223334455444322111 12211 11245889999999988 99999987 999888
Q ss_pred eCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 215 ENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 215 ~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
++. +..+.+.+|++ ++||-+|.|+|+-|.
T Consensus 140 ~~~---~f~l~t~~g~~--i~~d~lilAtGG~S~ 168 (408)
T COG2081 140 DDS---GFRLDTSSGET--VKCDSLILATGGKSW 168 (408)
T ss_pred cCc---eEEEEcCCCCE--EEccEEEEecCCcCC
Confidence 763 45677888874 569999999998874
No 73
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.45 E-value=2.1e-11 Score=130.61 Aligned_cols=180 Identities=20% Similarity=0.213 Sum_probs=95.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccc--c--ccccccccCchhhHHHHH
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLME--P--NRIVGELLQPGGYLKLVE 138 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~--~--~~~~g~~l~~~~~~~l~~ 138 (541)
|+..+||||||||++|+++|+.|+++|.+|+|+||.+ ...++++++.+++|...-+ . .+.+.+.+..+.. .++.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d-~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~-l~~~ 80 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD-LASATSSASTKLIHGGLRYLEHYEFRLVREALAEREV-LLRM 80 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC-CCCCccccccccccchHHHhhhccHHHHHHHHHHHHH-HHHh
Confidence 5567999999999999999999999999999999974 4455666666555422100 0 0000000000000 0000
Q ss_pred CCchhhHhhccc-eeee-----------eeEEEE--CC-------eeeeec-----CCCCC-CCC--CccceeecchHHH
Q 040732 139 LGLDDCVEEIDA-HPVV-----------GYALFK--DG-------KITKTP-----YPLGN-FQA--NVAGRSFHNGRFI 189 (541)
Q Consensus 139 lgl~~~~~~~~~-~~~~-----------g~~~~~--~g-------~~~~~~-----~~~~~-~~~--~~~~~~~~r~~l~ 189 (541)
.. +....... .+.. |..+++ .+ +..... .+... ... ......++..++.
T Consensus 81 ~p--~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~ 158 (508)
T PRK12266 81 AP--HIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLV 158 (508)
T ss_pred CC--CcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHH
Confidence 00 00000000 0000 000000 00 000000 00000 000 0011135667787
Q ss_pred HHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCc
Q 040732 190 QRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 190 ~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
..+.+.+.+. |+++..++ |+++..+++. .+|++.+ .+|+..+++|+.||+|+|.++.
T Consensus 159 ~~l~~~A~~~-Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 159 VLNARDAAER-GAEILTRTRVVSARRENGL-WHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHc-CCEEEcCcEEEEEEEeCCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 8888888777 88888876 9998776554 3566543 3466667889999999999984
No 74
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.44 E-value=7.3e-13 Score=135.56 Aligned_cols=173 Identities=25% Similarity=0.317 Sum_probs=98.5
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh-
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE- 146 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~- 146 (541)
||+|||||++|+++|+.|+++|++|+|+|+. ......++++...++..........-..+...+.+.++++ .+...
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~-~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~ 77 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG-DIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWREL--AEEYGI 77 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS-STTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHH--HHHTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec-cccccccccccccccccccccccccccchhhhhccchhhh--hhhcCc
Confidence 8999999999999999999999999999999 5655556665555443200000000001222222223222 00000
Q ss_pred hccceeeeeeEEEECCee-------------------------eeecCCCCCCC-----CCccceeecchHHHHHHHHHH
Q 040732 147 EIDAHPVVGYALFKDGKI-------------------------TKTPYPLGNFQ-----ANVAGRSFHNGRFIQRMREKA 196 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~-------------------------~~~~~~~~~~~-----~~~~~~~~~r~~l~~~L~~~~ 196 (541)
.....+...+.+..+... ....+|..... ....+..++..++.+.|.+.+
T Consensus 78 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~ 157 (358)
T PF01266_consen 78 PVGFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEA 157 (358)
T ss_dssp SCEEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHH
Confidence 000011112222211000 00111111100 012244577788999999999
Q ss_pred HcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 197 ASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 197 ~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+. |++++.++ |+++..+++++.+|. +++|+ ++||.||.|+|.++..
T Consensus 158 ~~~-Gv~i~~~~~V~~i~~~~~~v~gv~--~~~g~---i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 158 QRA-GVEIRTGTEVTSIDVDGGRVTGVR--TSDGE---IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHT-T-EEEESEEEEEEEEETTEEEEEE--ETTEE---EEECEEEE--GGGHHH
T ss_pred HHh-hhhccccccccchhhccccccccc--ccccc---cccceeEeccccccee
Confidence 988 89999995 999999998766555 56775 5599999999998754
No 75
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.42 E-value=2.8e-11 Score=132.22 Aligned_cols=73 Identities=21% Similarity=0.350 Sum_probs=57.3
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeee--CCeEEEEEEEcC-CCcEEEEEcCEEEEecCCCCc-ccccccC
Q 040732 182 SFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEE--NGIVKGVHYKTK-DGQEHKSYAPLTIVCDGGFSN-LRRSLCN 255 (541)
Q Consensus 182 ~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~--~~~v~gV~v~~~-~g~~~~v~a~lvV~AdG~~S~-vR~~l~~ 255 (541)
.++..++...|.+.+.+. |+++..++ |+++..+ ++++.+|++.+. +|+..++.||.||+|+|.+|. +++.++.
T Consensus 228 ~vdp~rl~~al~~~A~~~-Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~ 305 (627)
T PLN02464 228 QMNDSRLNVALACTAALA-GAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADG 305 (627)
T ss_pred EEcHHHHHHHHHHHHHhC-CcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccC
Confidence 367778999999999888 78888885 9998876 467888887653 455556789999999999985 6666653
No 76
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.39 E-value=1.3e-10 Score=120.47 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=51.4
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCC-CcccccccCCC
Q 040732 181 RSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGF-SNLRRSLCNPK 257 (541)
Q Consensus 181 ~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~-S~vR~~l~~~~ 257 (541)
..++..++.+.|.+.+++. +++++.++ |+++..+++. +.+.+++| ++.||.||+|+|.+ +.+++.++...
T Consensus 140 g~i~p~~~~~~l~~~~~~~-g~~~~~~~~V~~i~~~~~~---~~v~~~~~---~i~a~~vV~aaG~~~~~l~~~~g~~~ 211 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAH-GATVRDGTKVVEIEPTELL---VTVKTTKG---SYQANKLVVTAGAWTSKLLSPLGIEI 211 (380)
T ss_pred cEEcHHHHHHHHHHHHHHc-CCEEECCCeEEEEEecCCe---EEEEeCCC---EEEeCEEEEecCcchHHHhhhcccCC
Confidence 3467778899999888877 88999886 9998876654 33445555 25699999999987 56777776543
No 77
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.38 E-value=9.6e-12 Score=132.14 Aligned_cols=154 Identities=23% Similarity=0.309 Sum_probs=95.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCc-hhhHHHHHCCc-
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQP-GGYLKLVELGL- 141 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~~~~~l~~lgl- 141 (541)
...|||||||||+||+.||+.+++.|.+|+++|+...... ...+. ...|. +.. .-++.++.+|-
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG---~m~Cn----------psiGG-~akg~lvrEidalGg~ 67 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIG---QMSCN----------PAIGG-IAKGHLVREIDALGGE 67 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccc---ccCCc----------ccccc-chhhHHHHHHHhcCCH
Confidence 3569999999999999999999999999999998742111 00000 01110 111 11223344441
Q ss_pred h-hhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEE
Q 040732 142 D-DCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVK 220 (541)
Q Consensus 142 ~-~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~ 220 (541)
. ...+... ..+......+.. ........+++..+...|.+.+.+.+++++..++|+++..+++++.
T Consensus 68 ~g~~~d~~g----iq~r~ln~skGp---------AV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~ 134 (618)
T PRK05192 68 MGKAIDKTG----IQFRMLNTSKGP---------AVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVV 134 (618)
T ss_pred HHHHHhhcc----CceeecccCCCC---------ceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEE
Confidence 1 1111110 001111110000 0000112478888999999999888899999888999988888887
Q ss_pred EEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 221 GVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 221 gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
||.. .+|.. +.|+.||+|||.++.
T Consensus 135 GV~t--~dG~~--I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 135 GVVT--QDGLE--FRAKAVVLTTGTFLR 158 (618)
T ss_pred EEEE--CCCCE--EECCEEEEeeCcchh
Confidence 7774 56764 569999999998874
No 78
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.36 E-value=1.1e-10 Score=122.00 Aligned_cols=223 Identities=19% Similarity=0.161 Sum_probs=110.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhC-CC-cEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCc
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTD-GR-RVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGL 141 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~-G~-~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl 141 (541)
...+||+|||||++|+++|+.|+++ |. +|+|+||.. ...+.++++...++.....+. ...+...+.+..+++.
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~-~~~gas~~~~g~~~~~~~~~~---~~~~~~~s~~l~~~l~- 102 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW-LGGGNTGRNTTIVRSNYLYPE---SAELYEHAMKLWEGLS- 102 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc-ccCcccccccceeeecccCcc---ccHHHHHHHHHHHHHH-
Confidence 4668999999999999999999985 95 999999985 333444555444432211000 0011112222222110
Q ss_pred hhhHhhcc-ceeeeeeEEEE--------------------------CCeeeeecCCCCCCC----CCc-------cceee
Q 040732 142 DDCVEEID-AHPVVGYALFK--------------------------DGKITKTPYPLGNFQ----ANV-------AGRSF 183 (541)
Q Consensus 142 ~~~~~~~~-~~~~~g~~~~~--------------------------~g~~~~~~~~~~~~~----~~~-------~~~~~ 183 (541)
+.+ .++ .....|.-... +.......+|.-... ... .+..+
T Consensus 103 -~~~-~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v 180 (407)
T TIGR01373 103 -QDL-NYNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTA 180 (407)
T ss_pred -HHh-CCCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcC
Confidence 000 000 01111211111 111111111210000 000 11234
Q ss_pred cchHHHHHHHHHHHcCCCeEEEeCe-EEEeeee-CCeEEEEEEEcCCCcEEEEEcCEEEEecCCCC-cccccccCCCccc
Q 040732 184 HNGRFIQRMREKAASLPNVRMEEGT-VTSLFEE-NGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFS-NLRRSLCNPKVDI 260 (541)
Q Consensus 184 ~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~-~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S-~vR~~l~~~~~~~ 260 (541)
+...+...|.+.+.+. |+++++++ |+++..+ ++.+.+|+ +.+|+ +.++.||+|.|+++ .+++.++.+.+..
T Consensus 181 ~p~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~~~v~--t~~g~---i~a~~vVvaagg~~~~l~~~~g~~~~~~ 254 (407)
T TIGR01373 181 RHDAVAWGYARGADRR-GVDIIQNCEVTGFIRRDGGRVIGVE--TTRGF---IGAKKVGVAVAGHSSVVAAMAGFRLPIE 254 (407)
T ss_pred CHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCCcEEEEE--eCCce---EECCEEEECCChhhHHHHHHcCCCCCcC
Confidence 5566777888888887 89999885 9998754 45444443 45563 56887766666554 6677666543332
Q ss_pred ccceEEEEEeecCCCCCCeeEEEEcCCCcEEEEEccCCceEE
Q 040732 261 PSCFVGMALENCQLPVPNHGHVVLTDPSPILFYPISSSEVRC 302 (541)
Q Consensus 261 ~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~ 302 (541)
+.....++. . ..+. ....++..++..+++.|..++.+.+
T Consensus 255 ~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~y~~p~~~g~~~i 293 (407)
T TIGR01373 255 SHPLQALVS-E-PLKP-IIDTVVMSNAVHFYVSQSDKGELVI 293 (407)
T ss_pred cccceEEEe-c-CCCC-CcCCeEEeCCCceEEEEcCCceEEE
Confidence 322222221 1 1111 1112333344567788887775433
No 79
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.36 E-value=8.2e-11 Score=130.34 Aligned_cols=173 Identities=20% Similarity=0.250 Sum_probs=94.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.+||+|||||++|+++|+.|+++|.+|+|+||......+.++++...++............ +...+. .....++..+
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~-l~~~a~--~~a~~~~~~l 336 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSR-FFRAAF--LFARRFYDAL 336 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccccccccCCCCCHHHH-HHHHHH--HHHHHHHHHH
Confidence 5799999999999999999999999999999986555556666554443211000000000 000000 0011111211
Q ss_pred h--hcc-ceeeeee-EEEECCeee------------------------eecCCCCCCCC---CccceeecchHHHHHHHH
Q 040732 146 E--EID-AHPVVGY-ALFKDGKIT------------------------KTPYPLGNFQA---NVAGRSFHNGRFIQRMRE 194 (541)
Q Consensus 146 ~--~~~-~~~~~g~-~~~~~g~~~------------------------~~~~~~~~~~~---~~~~~~~~r~~l~~~L~~ 194 (541)
. ..+ .....|. .+..+.... ...++...... ...+..++...+.+.|.+
T Consensus 337 ~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~ 416 (662)
T PRK01747 337 PAAGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLA 416 (662)
T ss_pred HhcCCCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHH
Confidence 1 000 0011122 111111000 00001000000 011223566789999999
Q ss_pred HHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 195 KAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 195 ~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
.+.+ ++++++++ |+++..+++. +.+.+++|.. ++||.||.|+|.+|.
T Consensus 417 ~a~~--Gv~i~~~~~V~~i~~~~~~---~~v~t~~g~~--~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 417 LAGQ--QLTIHFGHEVARLEREDDG---WQLDFAGGTL--ASAPVVVLANGHDAA 464 (662)
T ss_pred hccc--CcEEEeCCEeeEEEEeCCE---EEEEECCCcE--EECCEEEECCCCCcc
Confidence 8876 78888876 8998877664 3455666654 359999999999985
No 80
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.36 E-value=1.9e-10 Score=119.00 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=45.4
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 182 SFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 182 ~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
.++..++...+.+.+.+. +++++.++ |+++..+++ ++.+.+++| ++.||.||.|+|.++.
T Consensus 145 ~v~p~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~---~~~v~~~~g---~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREA-GAELLFNEPVTAIEADGD---GVTVTTADG---TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHC-CCEEECCCEEEEEEeeCC---eEEEEeCCC---EEEeeEEEEecCcchh
Confidence 356667888888877776 89998876 999887666 345556666 3569999999999864
No 81
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.35 E-value=1e-11 Score=128.01 Aligned_cols=158 Identities=26% Similarity=0.303 Sum_probs=83.4
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCC---CcCCcceeeee-cccccccccccc-ccCch-hhHHHHHCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPD---RIDGRRVHVIE-RDLMEPNRIVGE-LLQPG-GYLKLVELG 140 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~---~~~~~~~~~~~-~~~~~~~~~~g~-~l~~~-~~~~l~~lg 140 (541)
|||+|||||||||++|+.|++.|.+|+|+||.+.... .+++.+.++.+ ..... ..... .-.+. -...+++++
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~--~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPS--EFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGG--GEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchh--hHhhhcccchHHHHHHHhcCC
Confidence 7999999999999999999999999999999976543 23344555544 11111 11110 00111 123455665
Q ss_pred chhhHhhccceeeeeeEEEE--CCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCC
Q 040732 141 LDDCVEEIDAHPVVGYALFK--DGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENG 217 (541)
Q Consensus 141 l~~~~~~~~~~~~~g~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~ 217 (541)
..+.+.- ....|+.... +++. ||.. -.-.++.+.|++.+++. +++++.++ |.++..+++
T Consensus 79 ~~d~~~f---f~~~Gv~~~~~~~gr~----fP~s----------~~a~~Vv~~L~~~l~~~-gv~i~~~~~V~~i~~~~~ 140 (409)
T PF03486_consen 79 PEDLIAF---FEELGVPTKIEEDGRV----FPKS----------DKASSVVDALLEELKRL-GVEIHFNTRVKSIEKKED 140 (409)
T ss_dssp HHHHHHH---HHHTT--EEE-STTEE----EETT------------HHHHHHHHHHHHHHH-T-EEE-S--EEEEEEETT
T ss_pred HHHHHHH---HHhcCCeEEEcCCCEE----CCCC----------CcHHHHHHHHHHHHHHc-CCEEEeCCEeeeeeecCC
Confidence 4433221 1112332221 1221 2211 12246889999999887 99999998 999998887
Q ss_pred eEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 218 IVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 218 ~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
.+..|+ +++++. +.||.||.|+|+.|.
T Consensus 141 ~~f~v~--~~~~~~--~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 141 GVFGVK--TKNGGE--YEADAVILATGGKSY 167 (409)
T ss_dssp EEEEEE--ETTTEE--EEESEEEE----SSS
T ss_pred ceeEee--ccCccc--ccCCEEEEecCCCCc
Confidence 655555 444443 569999999998873
No 82
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.34 E-value=3.7e-10 Score=118.22 Aligned_cols=70 Identities=23% Similarity=0.220 Sum_probs=47.2
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCc-EEEEEcCEEEEecCCCCc-cccccc
Q 040732 183 FHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQ-EHKSYAPLTIVCDGGFSN-LRRSLC 254 (541)
Q Consensus 183 ~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~-~~~v~a~lvV~AdG~~S~-vR~~l~ 254 (541)
++-.++...|.+.+++. |+++++++ |+++..+++.+. +.+.+.++. ..+++||.||+|+|.+|. +.+.++
T Consensus 194 ~~~~~~~~~l~~~a~~~-G~~i~~~~~V~~i~~~~~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~ 266 (410)
T PRK12409 194 GDIHKFTTGLAAACARL-GVQFRYGQEVTSIKTDGGGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG 266 (410)
T ss_pred cCHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEE-EEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence 34456788888888887 89999886 999887666432 333332210 124679999999999984 333343
No 83
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.33 E-value=1.2e-11 Score=124.77 Aligned_cols=149 Identities=30% Similarity=0.356 Sum_probs=89.3
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEE-ecCCCCCCCcCCcceeeeeccccccccccccccCch-hhHHHHHCCch-hh
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVI-ERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPG-GYLKLVELGLD-DC 144 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~vi-Er~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~l~~lgl~-~~ 144 (541)
||+|||||.||+.||++++|.|.+|+++ ++........=.. ..+.. ..+ -.+.++.+|-. -.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnp--------------sigg~-~kg~L~~Eidalgg~m~~ 65 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNP--------------SIGGI-AKGHLVREIDALGGLMGR 65 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSS--------------EEEST-THHHHHHHHHHTT-SHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchh--------------hhccc-cccchhHHHhhhhhHHHH
Confidence 8999999999999999999999999999 3332222200001 11111 111 12334455511 11
Q ss_pred HhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEEEE
Q 040732 145 VEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGVHY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV~v 224 (541)
.. ...++.+...... ........-..++|..+.+.+++.+.+.|++++.+++|+++..+++++.||.
T Consensus 66 ~a-----D~~~i~~~~lN~s-------kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~- 132 (392)
T PF01134_consen 66 AA-----DETGIHFRMLNRS-------KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVV- 132 (392)
T ss_dssp HH-----HHHEEEEEEESTT-------S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEE-
T ss_pred HH-----hHhhhhhhccccc-------CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEE-
Confidence 11 1112211111000 0001111224799999999999999999999999999999999999999877
Q ss_pred EcCCCcEEEEEcCEEEEecCCCC
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S 247 (541)
+.+|+. +.+|.||.|||.+.
T Consensus 133 -~~~g~~--~~a~~vVlaTGtfl 152 (392)
T PF01134_consen 133 -TKDGEE--IEADAVVLATGTFL 152 (392)
T ss_dssp -ETTSEE--EEECEEEE-TTTGB
T ss_pred -eCCCCE--EecCEEEEeccccc
Confidence 567875 55999999999954
No 84
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.32 E-value=4.2e-11 Score=129.26 Aligned_cols=184 Identities=18% Similarity=0.188 Sum_probs=105.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
..+||+|||||++|+++|+.|+++|.+|+||||.. ...++++++..++|...-.. . ... ......+++..++..
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d-~~~GaS~~~~gllh~g~ry~-~-~~~---~~~~~~~~e~~~l~~ 78 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHD-IATGATGRNHGLLHSGARYA-V-TDA---ESARECISENQILKR 78 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC-CCCCcccccccceeccchhc-c-cCH---HHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999964 44556666666665321000 0 000 000001111011110
Q ss_pred HhhccceeeeeeEEEE-------------------------CCeeeeecCCCCCCC--C--CccceeecchHHHHHHHHH
Q 040732 145 VEEIDAHPVVGYALFK-------------------------DGKITKTPYPLGNFQ--A--NVAGRSFHNGRFIQRMREK 195 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~-------------------------~g~~~~~~~~~~~~~--~--~~~~~~~~r~~l~~~L~~~ 195 (541)
+......+..++.+.. +.......+|.-... . ......++..++...+.+.
T Consensus 79 ~a~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~ 158 (546)
T PRK11101 79 IARHCVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLD 158 (546)
T ss_pred hchHhhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHH
Confidence 0000000001111100 000000011110000 0 0011357777888888888
Q ss_pred HHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCc-ccccccC
Q 040732 196 AASLPNVRMEEGT-VTSLFEENGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSN-LRRSLCN 255 (541)
Q Consensus 196 ~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~-vR~~l~~ 255 (541)
+.+. |+++.+++ |+++..+++++.+|++.+ .+|+..+++|+.||+|+|.|+. +.++.+.
T Consensus 159 A~~~-Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~ 220 (546)
T PRK11101 159 AKEH-GAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADL 220 (546)
T ss_pred HHhC-CCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCC
Confidence 8887 78888876 999988888888888765 3555566889999999999984 5555544
No 85
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.31 E-value=6.7e-11 Score=123.10 Aligned_cols=176 Identities=19% Similarity=0.175 Sum_probs=97.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhC--CCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHH----HHC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTD--GRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKL----VEL 139 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~--G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l----~~l 139 (541)
.+||+|||||++|+++|+.|+++ |.+|+|+||........++++...++..........-..+...+.+.. +++
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 37999999999999999999999 999999999864444444544443332110000000000111111111 111
Q ss_pred CchhhHhhccceeeeeeEEEE-C-------------------------CeeeeecCCCCCCC---CCccceeecchHHHH
Q 040732 140 GLDDCVEEIDAHPVVGYALFK-D-------------------------GKITKTPYPLGNFQ---ANVAGRSFHNGRFIQ 190 (541)
Q Consensus 140 gl~~~~~~~~~~~~~g~~~~~-~-------------------------g~~~~~~~~~~~~~---~~~~~~~~~r~~l~~ 190 (541)
++ .. ...|..+.. + .......+|..... ....+..++...+.+
T Consensus 82 ~~-------~~-~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~ 153 (393)
T PRK11728 82 GI-------PY-EECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAE 153 (393)
T ss_pred CC-------Cc-ccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHH
Confidence 11 00 011111111 1 00000011110000 011224567788999
Q ss_pred HHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc-ccccccCC
Q 040732 191 RMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN-LRRSLCNP 256 (541)
Q Consensus 191 ~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~-vR~~l~~~ 256 (541)
.|.+.+++. |++++.++ |+++..+++. +.+.+.+| ++.||.||.|+|.+|. +.+.++.+
T Consensus 154 aL~~~~~~~-Gv~i~~~~~V~~i~~~~~~---~~V~~~~g---~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 154 AMAELIQAR-GGEIRLGAEVTALDEHANG---VVVRTTQG---EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred HHHHHHHhC-CCEEEcCCEEEEEEecCCe---EEEEECCC---EEEeCEEEECCCcchHHHHHHhCCC
Confidence 999999887 88998886 8888766653 34445555 3569999999999984 56666643
No 86
>PLN02661 Putative thiazole synthesis
Probab=99.28 E-value=5.8e-11 Score=118.09 Aligned_cols=144 Identities=24% Similarity=0.254 Sum_probs=91.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhC-CCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCch
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTD-GRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLD 142 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~-G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~ 142 (541)
..++||+|||||++|+++|+.|++. |.+|+|+||......+...... ......++....+.|+++|+.
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~-----------l~~~~vv~~~a~e~LeElGV~ 158 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQ-----------LFSAMVVRKPAHLFLDELGVP 158 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcc-----------cccccccccHHHHHHHHcCCC
Confidence 4568999999999999999999986 8999999997643221000000 000011222234556666542
Q ss_pred hhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEE
Q 040732 143 DCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKG 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~g 221 (541)
- +. ..++ . ...+-..+...|.+.+.+.++++++.++ +++++.+++++.|
T Consensus 159 f--d~-----~dgy-------------~----------vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaG 208 (357)
T PLN02661 159 Y--DE-----QENY-------------V----------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGG 208 (357)
T ss_pred c--cc-----CCCe-------------e----------EecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEE
Confidence 1 00 0000 0 0112234667888878777799999997 9999988889989
Q ss_pred EEEE------cCCC----cEEEEEcCEEEEecCCCCc
Q 040732 222 VHYK------TKDG----QEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 222 V~v~------~~~g----~~~~v~a~lvV~AdG~~S~ 248 (541)
|.+. ..++ +...++|+.||.|+|..++
T Consensus 209 VVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 209 VVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGP 245 (357)
T ss_pred EEeecchhhhccCCCCccceeEEECCEEEEcCCCCCc
Confidence 8852 1111 2346789999999997664
No 87
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.27 E-value=8.4e-10 Score=115.81 Aligned_cols=60 Identities=32% Similarity=0.382 Sum_probs=45.3
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 183 FHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 183 ~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
++...+.+.|.+.+.+. |+++++++ |+++..+++.+.+|+ ++++ +++||.||.|+|.++.
T Consensus 198 ~~p~~~~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~v~--t~~~---~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQL-GVKFRFNTPVDGLLVEGGRITGVQ--TGGG---VITADAYVVALGSYST 258 (416)
T ss_pred CCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCEEEEEE--eCCc---EEeCCEEEECCCcchH
Confidence 45557888898888876 88998876 999887777654443 4444 3569999999999984
No 88
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.25 E-value=4.5e-12 Score=132.94 Aligned_cols=155 Identities=25% Similarity=0.224 Sum_probs=34.0
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHhh
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVEE 147 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~~ 147 (541)
||||||||++|++||+.++|.|.+|+||||.+........ ..+.......... ...-|+...+..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~--------------~~~~~~~~~~~~~-~~~~gi~~e~~~ 65 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS--------------GGVSPFDGNHDED-QVIGGIFREFLN 65 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG--------------SSS-EETTEEHHH-HHHHHHHHHHHH
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE--------------CCcCChhhcchhh-ccCCCHHHHHHH
Confidence 8999999999999999999999999999998754331110 0100001100000 111123333222
Q ss_pred ccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEc
Q 040732 148 IDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKT 226 (541)
Q Consensus 148 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~ 226 (541)
.... ..+. ..+ ..........+++..+...|.+.+.+. |++++.++ |+++..+++++.+|.+.+
T Consensus 66 ~~~~-~~~~-----------~~~--~~~~~~~~~~~~~~~~~~~l~~~l~e~-gv~v~~~t~v~~v~~~~~~i~~V~~~~ 130 (428)
T PF12831_consen 66 RLRA-RGGY-----------PQE--DRYGWVSNVPFDPEVFKAVLDEMLAEA-GVEVLLGTRVVDVIRDGGRITGVIVET 130 (428)
T ss_dssp ST------------------------------------------------------------------------------
T ss_pred HHhh-hccc-----------ccc--ccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 1100 0000 000 000000013455566777777777664 99999998 999999888999999987
Q ss_pred CCCcEEEEEcCEEEEecCCCCccccccc
Q 040732 227 KDGQEHKSYAPLTIVCDGGFSNLRRSLC 254 (541)
Q Consensus 227 ~~g~~~~v~a~lvV~AdG~~S~vR~~l~ 254 (541)
++| ..+++|+++|+|+|- +.+-...|
T Consensus 131 ~~g-~~~i~A~~~IDaTG~-g~l~~~aG 156 (428)
T PF12831_consen 131 KSG-RKEIRAKVFIDATGD-GDLAALAG 156 (428)
T ss_dssp ----------------------------
T ss_pred ccc-ccccccccccccccc-cccccccc
Confidence 777 567899999999995 44444443
No 89
>PRK07121 hypothetical protein; Validated
Probab=99.23 E-value=1.9e-10 Score=123.07 Aligned_cols=66 Identities=26% Similarity=0.395 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHcCCCeEEEeCe-EEEeeee-CCeEEEEEEEcCCCcEEEEEc-CEEEEecCCCCcccccc
Q 040732 186 GRFIQRMREKAASLPNVRMEEGT-VTSLFEE-NGIVKGVHYKTKDGQEHKSYA-PLTIVCDGGFSNLRRSL 253 (541)
Q Consensus 186 ~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~-~~~v~gV~v~~~~g~~~~v~a-~lvV~AdG~~S~vR~~l 253 (541)
..+.+.|.+.+++. ++++..++ +++++.+ ++++.||.+.. +++..++.| +.||.|+|.++.-++++
T Consensus 177 ~~~~~~L~~~~~~~-gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 177 AMLMDPLAKRAAAL-GVQIRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred HHHHHHHHHHHHhC-CCEEEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 35788888888876 89998887 9999876 46899998854 555567889 99999999999754443
No 90
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.23 E-value=8.3e-11 Score=123.47 Aligned_cols=63 Identities=30% Similarity=0.431 Sum_probs=52.0
Q ss_pred chHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCc
Q 040732 185 NGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 185 r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
-..+.+.|.+.+++. +++++.++ +++++.++++|.||.+.+ .+|+..+++|+.||.|+|.++.
T Consensus 140 g~~~~~~l~~~~~~~-gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEA-GVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHT-TEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhc-CeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 356889999999998 69999998 999999999999999983 6788888999999999999996
No 91
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.22 E-value=1.7e-10 Score=122.72 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccc
Q 040732 186 GRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSL 253 (541)
Q Consensus 186 ~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l 253 (541)
..+...|.+.+++. +++++.++ |++++.+++++.+|.+...+|+...++|+.||.|+|.++..+.++
T Consensus 131 ~~l~~~l~~~~~~~-gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~ 198 (466)
T PRK08274 131 KALVNALYRSAERL-GVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL 198 (466)
T ss_pred HHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence 35778888888876 89999886 999988788888888765667666788999999999988765544
No 92
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.21 E-value=6.3e-10 Score=107.03 Aligned_cols=182 Identities=23% Similarity=0.252 Sum_probs=100.2
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhh--HHHHHC
Q 040732 62 ESVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGY--LKLVEL 139 (541)
Q Consensus 62 ~~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~l~~l 139 (541)
.|....||||||||+-|+++|+.|+++|.+++++|+-+.+.. .|.+-+.. |+.--....--. ..++.+
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~--~GSShg~s--------RIiR~~Y~e~~Y~~m~~ea~ 72 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHS--RGSSHGIS--------RIIRPAYAEDKYMSMVLEAY 72 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcc--cCcccCcc--------eeechhhhhHHHHHHHHHHH
Confidence 356779999999999999999999999999999999874433 12111100 211111110000 001111
Q ss_pred CchhhHhhccceee---eeeEEE------------------------ECCeeeeecCC-CCCCCC------Cccceeecc
Q 040732 140 GLDDCVEEIDAHPV---VGYALF------------------------KDGKITKTPYP-LGNFQA------NVAGRSFHN 185 (541)
Q Consensus 140 gl~~~~~~~~~~~~---~g~~~~------------------------~~g~~~~~~~~-~~~~~~------~~~~~~~~r 185 (541)
..|..+........ .+..+. ...+..+..|| ....+. +..|..+.-
T Consensus 73 e~W~~~~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a 152 (399)
T KOG2820|consen 73 EKWRNLPEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINA 152 (399)
T ss_pred HHHHhChhhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeH
Confidence 11111111000000 000000 01222334455 222222 223344666
Q ss_pred hHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCC--cccccccCC
Q 040732 186 GRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFS--NLRRSLCNP 256 (541)
Q Consensus 186 ~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S--~vR~~l~~~ 256 (541)
.+-.+.|...+++. |+.++.++ |+.....+.....|.|++.+|..+. |+-+|.+.|+|- -++..++..
T Consensus 153 ~kslk~~~~~~~~~-G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~--akkiI~t~GaWi~klL~~~~~~~ 223 (399)
T KOG2820|consen 153 AKSLKALQDKAREL-GVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYH--AKKIIFTVGAWINKLLPTSLAIG 223 (399)
T ss_pred HHHHHHHHHHHHHc-CeEEecCcceeeEeeccCCCceeEEEeccCCeee--cceEEEEecHHHHhhcCcccccC
Confidence 67788899999998 89999997 6655533333335677788898654 999999999983 344444443
No 93
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.21 E-value=3e-10 Score=116.19 Aligned_cols=182 Identities=22% Similarity=0.238 Sum_probs=111.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCC--CcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhh----HHHHH
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDG--RRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGY----LKLVE 138 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G--~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~----~~l~~ 138 (541)
..+||+|||||+.|+++|+.|++++ ++|+|+||.......++++....+|..+.++......-+.-.+. ..-++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999998 99999999988877777777777775543222211111111111 11222
Q ss_pred CCchhhHhhccceeeeeeEEEE--------------------------CCeeeeecCCCCC---C--CCCccceeecchH
Q 040732 139 LGLDDCVEEIDAHPVVGYALFK--------------------------DGKITKTPYPLGN---F--QANVAGRSFHNGR 187 (541)
Q Consensus 139 lgl~~~~~~~~~~~~~g~~~~~--------------------------~g~~~~~~~~~~~---~--~~~~~~~~~~r~~ 187 (541)
++.. ...+..+.+.. +.......-|.-. . ...+.+..++-..
T Consensus 82 ~~~~-------f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~ 154 (429)
T COG0579 82 LGIP-------FINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGE 154 (429)
T ss_pred hCCc-------ccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHH
Confidence 2211 00111111111 1111100011000 0 0112345678888
Q ss_pred HHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc-ccccccCCC
Q 040732 188 FIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN-LRRSLCNPK 257 (541)
Q Consensus 188 l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~-vR~~l~~~~ 257 (541)
+...|.+.+.+. |+.++.++ |+++.++++.+ ..+.+.+|++. ++|+.||+|.|..|- +.++.+.+.
T Consensus 155 ~t~~l~e~a~~~-g~~i~ln~eV~~i~~~~dg~--~~~~~~~g~~~-~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 155 LTRALAEEAQAN-GVELRLNTEVTGIEKQSDGV--FVLNTSNGEET-LEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHHHHHHHc-CCEEEecCeeeEEEEeCCce--EEEEecCCcEE-EEeeEEEECCchhHHHHHHHhCCCc
Confidence 999999999988 89999998 99999877642 22345677764 779999999999884 556666543
No 94
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.21 E-value=3.9e-10 Score=119.58 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=54.7
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE-cCCCcEEEEEcCEEEEecCCCC-cccccccCC
Q 040732 180 GRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYK-TKDGQEHKSYAPLTIVCDGGFS-NLRRSLCNP 256 (541)
Q Consensus 180 ~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~-~~~g~~~~v~a~lvV~AdG~~S-~vR~~l~~~ 256 (541)
+..++...+.+.|.+.+.+. |+++++++ |+++..+++..+.|++. +.+|+..+++||.||+|.|.+| .+++.++.+
T Consensus 172 ~g~Vdp~~l~~aL~~~a~~~-Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 172 GTDVDFGALTKQLLGYLVQN-GTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred CEEECHHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 34578888999999999887 89999986 99988754322224332 2345444577999999999887 467777764
No 95
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.20 E-value=1.5e-10 Score=122.29 Aligned_cols=66 Identities=23% Similarity=0.335 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHcCCCeEEEeCe-EEEeeee-CCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCccccc
Q 040732 186 GRFIQRMREKAASLPNVRMEEGT-VTSLFEE-NGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRS 252 (541)
Q Consensus 186 ~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~-~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~ 252 (541)
..+.+.|.+.+.+. +++++.++ |++++.+ ++++.||.+...+++...+.++.||.|+|.++.-+++
T Consensus 130 ~~l~~~l~~~~~~~-gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m 197 (439)
T TIGR01813 130 AEIVQKLYKKAKKE-GIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEM 197 (439)
T ss_pred HHHHHHHHHHHHHc-CCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHH
Confidence 45888898888887 89999887 9999875 5688899887766765567899999999999974433
No 96
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.18 E-value=4.8e-10 Score=119.03 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=54.7
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE-cCCCcEEEEEcCEEEEecCCCC-cccccccCC
Q 040732 180 GRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYK-TKDGQEHKSYAPLTIVCDGGFS-NLRRSLCNP 256 (541)
Q Consensus 180 ~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~-~~~g~~~~v~a~lvV~AdG~~S-~vR~~l~~~ 256 (541)
+..++...+.+.|.+.+++.++++++.++ |+++..+++..+.|.+. +.+|+..+++|+.||+|+|.+| .+++.++.+
T Consensus 177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 44678888999999999887668999887 99988754431224433 2345433477999999999887 466666654
No 97
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.17 E-value=5.8e-10 Score=121.48 Aligned_cols=64 Identities=20% Similarity=0.342 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNLRR 251 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~vR~ 251 (541)
.+...|.+.+.+. ++++++++ +++++.+++++.||.+.+ .+|+...+.|+.||.|+|++|.+..
T Consensus 130 ~i~~~L~~~~~~~-gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~ 195 (566)
T TIGR01812 130 ALLHTLYEQCLKL-GVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYK 195 (566)
T ss_pred HHHHHHHHHHHHc-CCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCC
Confidence 4777888888777 89999987 999988888999988754 4676667889999999999997654
No 98
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=6.8e-10 Score=120.90 Aligned_cols=65 Identities=29% Similarity=0.388 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNLRR 251 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~vR~ 251 (541)
.+.+.|.+.+.+.++++++.++ +++++.+++++.||.+.+ .+|+...+.|+.||.|||+++.+..
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~ 204 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYG 204 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCC
Confidence 4778888888765689999887 999988888899988654 4676667889999999999987543
No 99
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.17 E-value=3.2e-10 Score=121.07 Aligned_cols=65 Identities=28% Similarity=0.389 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccc
Q 040732 186 GRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRR 251 (541)
Q Consensus 186 ~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~ 251 (541)
..+.+.|.+.+++.+++++++++ +++++.+++++.||.+... ++...+.++.||.|+|++|.+..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~-~~~~~i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNR-ETVETCHADAVVLATGGAGKLYQ 193 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEEC-CcEEEEEcCEEEECCCcccCCCC
Confidence 35888899988876699999997 9999877788888887654 44456789999999999998654
No 100
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.16 E-value=7.4e-10 Score=120.11 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+.+.|.+.+.+.+++++..++ +++++.+++++.||.+.+ .+|+...+.|+.||.|||+++.+
T Consensus 133 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 133 HMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 4788888888777789999887 999998888999998654 57777778899999999999965
No 101
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.15 E-value=4e-10 Score=118.29 Aligned_cols=62 Identities=19% Similarity=0.360 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+.+.|.+.+++.+++++++++ +++++.+++++.||.+.. +++..++.|+.||.|+|+++.+
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~-~g~~~~i~Ak~VILAtGG~~~l 191 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLK-DNKQINIYSKVTILATGGIGGL 191 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEE-CCcEEEEEcCeEEEccCccccc
Confidence 4778888888766689999998 999988788888877644 4555567899999999998753
No 102
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.13 E-value=5.5e-10 Score=121.36 Aligned_cols=64 Identities=14% Similarity=0.301 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE-cCCCcEEEEEcCEEEEecCCCCccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYK-TKDGQEHKSYAPLTIVCDGGFSNLR 250 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~-~~~g~~~~v~a~lvV~AdG~~S~vR 250 (541)
.+...|.+.+.+.++++++.++ +++++.+++++.||.+. ..+|+...+.|+.||.|||++|.+-
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 4778888888777789999887 99999888899998864 3577766788999999999999763
No 103
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.13 E-value=1.2e-09 Score=118.32 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=49.8
Q ss_pred HHHHHHHHHHH---cCCCeEEEeCe-EEEeeeeCCeEEEEEEEc--CC------------CcEEEEEcCEEEEecCCCCc
Q 040732 187 RFIQRMREKAA---SLPNVRMEEGT-VTSLFEENGIVKGVHYKT--KD------------GQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 187 ~l~~~L~~~~~---~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~--~~------------g~~~~v~a~lvV~AdG~~S~ 248 (541)
.+.+.|.+.+. +.++++++.++ +++++.++++|+||.+.. .+ ++...+.|+-||.|+|.++.
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~ 228 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGG 228 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCccc
Confidence 36666666554 34579999997 999998889999998642 11 23456889999999999998
Q ss_pred ccccc
Q 040732 249 LRRSL 253 (541)
Q Consensus 249 vR~~l 253 (541)
.++++
T Consensus 229 n~em~ 233 (549)
T PRK12834 229 NHELV 233 (549)
T ss_pred CHHHH
Confidence 76554
No 104
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.12 E-value=1.2e-09 Score=116.17 Aligned_cols=156 Identities=22% Similarity=0.309 Sum_probs=94.8
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCch-hhHHHHHCCc-h-h
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPG-GYLKLVELGL-D-D 143 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~l~~lgl-~-~ 143 (541)
|||+|||||++|+.+|..+++.|.+|+|+|+........ +.. ...|. +..+ -.+.++.+|- . .
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~-~c~------------ps~gG-~a~g~l~rEidaLGG~~~~ 66 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC-SCN------------PAIGG-PAKGILVKEIDALGGLMGK 66 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC-Ccc------------ccccc-cccchhhhhhhcccchHHH
Confidence 699999999999999999999999999999974221100 000 01110 1111 1223344431 1 1
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeee-CCeEEEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEE-NGIVKGV 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~-~~~v~gV 222 (541)
..+.. ...+........ + ........+++..+.+.|.+.+.+.+++++++++|+++..+ ++++.+|
T Consensus 67 ~~d~~----~i~~r~ln~skg-----p----AV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV 133 (617)
T TIGR00136 67 AADKA----GLQFRVLNSSKG-----P----AVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGV 133 (617)
T ss_pred HHHhh----ceeheecccCCC-----C----cccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEE
Confidence 11110 001111110000 0 00111235788889999999999999999999999888765 6677777
Q ss_pred EEEcCCCcEEEEEcCEEEEecCCCCcccccc
Q 040732 223 HYKTKDGQEHKSYAPLTIVCDGGFSNLRRSL 253 (541)
Q Consensus 223 ~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l 253 (541)
.. .+|.. +.|+.||+|+|.+..-+..+
T Consensus 134 ~t--~~G~~--I~Ad~VILATGtfL~g~ihi 160 (617)
T TIGR00136 134 VT--QDGLK--FRAKAVIITTGTFLRGKIHI 160 (617)
T ss_pred EE--CCCCE--EECCEEEEccCcccCCCEEe
Confidence 64 56664 56999999999997533333
No 105
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.11 E-value=1.9e-09 Score=116.77 Aligned_cols=65 Identities=32% Similarity=0.362 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEc-CEEEEecCCCCcccccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYA-PLTIVCDGGFSNLRRSL 253 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a-~lvV~AdG~~S~vR~~l 253 (541)
.+...|.+.+++. +++++.++ |++++.++++|+||.+.. +|+...+.| +-||.|+|.++.-.+++
T Consensus 209 ~l~~~l~~~~~~~-gv~i~~~~~v~~Li~~~g~v~Gv~~~~-~g~~~~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 209 ALIGRMLEAALAA-GVPLWTNTPLTELIVEDGRVVGVVVVR-DGREVLIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCEEEEEEEEE-CCeEEEEEecceEEEecCCccCCHHHH
Confidence 4667788888776 89999997 999998889999998864 566667888 47999999999854443
No 106
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=6.6e-10 Score=120.47 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcC-CCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTK-DGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~-~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+...|.+.+.+. +|++..++ +++++.+++++.||.+.+. +|+...+.|+.||.|+|+++.+
T Consensus 137 ~i~~~L~~~~~~~-gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 137 ALLHTLFERTSGL-NVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred HHHHHHHHHHHhC-CCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 4777888888776 89999987 9999988899999988764 5666678899999999999854
No 107
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=9.6e-10 Score=119.60 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE-cCCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYK-TKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~-~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+...|.+.+.+. +|+++.++ ++++..+++++.||.+. ..+|+...+.|+.||.|+|+++.+
T Consensus 136 ~i~~~L~~~~~~~-gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 136 AILHELVNNLRRY-GVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHhhC-CCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 4778888888775 89999987 99998888889998753 456766668899999999999865
No 108
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=2.9e-09 Score=116.72 Aligned_cols=63 Identities=21% Similarity=0.364 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCC------------CeEEEeCe-EEEeeeeCCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLP------------NVRMEEGT-VTSLFEENGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~------------~v~v~~~~-v~~l~~~~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+...|.+.+.+.+ +++++.++ +++++.+++++.||.+.. .+|+...+.|+.||.|+|+++..
T Consensus 139 ~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 139 ELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKS 215 (626)
T ss_pred HHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccCC
Confidence 47777888776652 39999987 999988888899987654 56776678899999999997754
No 109
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.08 E-value=2.3e-09 Score=113.04 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=54.4
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeee-CCeEEEEEEE-cCCCcEEEEEcCEEEEecCCCCc-ccccccC
Q 040732 180 GRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEE-NGIVKGVHYK-TKDGQEHKSYAPLTIVCDGGFSN-LRRSLCN 255 (541)
Q Consensus 180 ~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~-~~~v~gV~v~-~~~g~~~~v~a~lvV~AdG~~S~-vR~~l~~ 255 (541)
+..++...+.+.|.+.+.+.+++++++++ |+++..+ ++.+. ++++ +.+|+..+++||.||+|.|.+|. +.+.++.
T Consensus 178 ~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi 256 (497)
T PRK13339 178 GTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGI 256 (497)
T ss_pred ceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCC
Confidence 44678888999999988766689999987 9988766 54432 4432 33453334679999999999984 5666665
Q ss_pred C
Q 040732 256 P 256 (541)
Q Consensus 256 ~ 256 (541)
+
T Consensus 257 ~ 257 (497)
T PRK13339 257 P 257 (497)
T ss_pred C
Confidence 4
No 110
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.08 E-value=1.3e-09 Score=119.02 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=51.3
Q ss_pred chHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE-cCCCcEEEEEcCEEEEecCCCCc
Q 040732 185 NGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYK-TKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 185 r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~-~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
...+.+.|.+.+++.++++++.++ |+++..+++++.||.+. ..+|+...+.|+.||.|+|+++.
T Consensus 131 G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 131 GESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 345778888888877679999987 99998777888888753 45666667889999999999875
No 111
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.08 E-value=3.4e-09 Score=114.48 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEc-CEEEEecCCCCccccc
Q 040732 188 FIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYA-PLTIVCDGGFSNLRRS 252 (541)
Q Consensus 188 l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a-~lvV~AdG~~S~vR~~ 252 (541)
+...|.+.+++. +++++.++ +++++.++++|+||.+.. +|.+..+.+ +-||.|+|+++...++
T Consensus 219 l~~~L~~~~~~~-Gv~i~~~t~v~~Li~~~g~V~GV~~~~-~g~~~~i~a~kaVILAtGGf~~n~em 283 (564)
T PRK12845 219 LAAGLFAGVLRA-GIPIWTETSLVRLTDDGGRVTGAVVDH-RGREVTVTARRGVVLAAGGFDHDMEM 283 (564)
T ss_pred HHHHHHHHHHHC-CCEEEecCEeeEEEecCCEEEEEEEEE-CCcEEEEEcCCEEEEecCCccccHHH
Confidence 556777777776 89999987 999987778999998764 455555666 6899999999987544
No 112
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=1e-09 Score=120.25 Aligned_cols=60 Identities=22% Similarity=0.376 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcC-CCcEEEEEcCEEEEecCCCCcc
Q 040732 189 IQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTK-DGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 189 ~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~-~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+.|.+.+++. +|++++++ +++++.++++|.||.+.+. +|+...+.|+.||.|+|+++.+
T Consensus 173 ~~~L~~~~~~~-gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 173 YQALSRQIAAG-TVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHHhc-CCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 35566667654 89999997 9999988889999998764 6776678899999999999875
No 113
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.07 E-value=2.4e-09 Score=117.09 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeee-eCCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFE-ENGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~-~~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+...|.+.+.+. ++++..++ +++++. +++++.||.+.. .+|+...+.|+.||.|+|+++..
T Consensus 167 ~i~~~L~~~a~~~-gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 167 AMLHTLYGQSLKY-DCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred HHHHHHHHHHHhC-CCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 5788888888876 89999997 999887 678899998744 57877778999999999999753
No 114
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.07 E-value=1.3e-09 Score=117.51 Aligned_cols=63 Identities=21% Similarity=0.360 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeC-CeEEEEEEEc-----CCCcEEEEEcCEEEEecCCCCcccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEEN-GIVKGVHYKT-----KDGQEHKSYAPLTIVCDGGFSNLRR 251 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~-~~v~gV~v~~-----~~g~~~~v~a~lvV~AdG~~S~vR~ 251 (541)
.+.+.|.+.+++. +++++.++ +++++.++ +++.||.+.+ .++ ...+.|+.||.|||++|.++.
T Consensus 145 ~i~~~L~~~~~~~-gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g-~~~i~Ak~VIlATGG~~~~~~ 214 (541)
T PRK07804 145 EVQRALDAAVRAD-PLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDG-VGAVHAPAVVLATGGLGQLYA 214 (541)
T ss_pred HHHHHHHHHHHhC-CCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCc-EEEEEcCeEEECCCCCCCCCC
Confidence 5778888888877 59999887 99998764 6889988762 333 346789999999999997653
No 115
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=1.5e-09 Score=117.37 Aligned_cols=62 Identities=21% Similarity=0.342 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCe-EEEEEEEc-CCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGI-VKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~-v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+...|.+.+.+. +++++.++ +++++.+++. +.||.+.. .+|+...+.|+.||.|+|+++.+
T Consensus 135 ~i~~~L~~~~~~~-gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~ 199 (543)
T PRK06263 135 EMMMGLMEYLIKE-RIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQL 199 (543)
T ss_pred HHHHHHHHHHhcC-CCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCCC
Confidence 4777888888774 89999997 9999876654 88988765 67877778899999999999853
No 116
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=1.9e-09 Score=117.17 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeee-CCeEEEEEEE-cCCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEE-NGIVKGVHYK-TKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~-~~~v~gV~v~-~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+...|.+.+.+. +++++.++ +++++.+ ++++.||.+. ..+|+...+.|+.||.|+|+++.+
T Consensus 144 ~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 144 ALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHhhhc-CCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 4778888877765 89998887 9999874 7899999875 457877778899999999999864
No 117
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.05 E-value=2.9e-08 Score=103.07 Aligned_cols=63 Identities=24% Similarity=0.249 Sum_probs=45.7
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 181 RSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 181 ~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
..++...+.+.|.+.+.+.+...+..++ ++.+..+. . .+.+.+.+|+ +.|+.||.|+|.++..
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~--~~~v~t~~g~---i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-R--VVGVETDGGT---IEADKVVLAAGAWAGE 214 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-c--EEEEEeCCcc---EEeCEEEEcCchHHHH
Confidence 3466678999999999988546666666 77766652 3 3445566776 5599999999999864
No 118
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=3.6e-09 Score=115.21 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCC---CeEEEeCe-EEEeeee-CCeEEEEEEEcC-CCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLP---NVRMEEGT-VTSLFEE-NGIVKGVHYKTK-DGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~---~v~v~~~~-v~~l~~~-~~~v~gV~v~~~-~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+...|.+.+.+.+ +|++..++ +++++.+ +++|.||.+.+. +|+...+.|+.||.|+|+++.+
T Consensus 134 ~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 134 QLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGII 202 (589)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCC
Confidence 47777877776542 38888886 8888874 688999998764 5665668899999999999864
No 119
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.05 E-value=2.5e-09 Score=116.91 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeee-CCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEE-NGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~-~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+...|.+.+.+. ++++..++ +++++.+ ++++.||.+.+ .+|+...+.|+.||.|+|+++..
T Consensus 188 ~i~~~L~~~a~~~-gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 188 AMLHTLYGQAMKH-NTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHhC-CCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 4778888888776 89999887 9998876 68899998865 47877788999999999999864
No 120
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.05 E-value=1.9e-09 Score=113.60 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=84.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCch
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLD 142 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~ 142 (541)
+....+|+|||||++||++|..|.+.|++|+|+||.......+.-.. .. ..-...+.+.... . .-.+.
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~-~~---------~~d~~~~~~~~~~-~-~s~~Y 74 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTP-KS---------ESDPLSLDPTRSI-V-HSSVY 74 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCC-Cc---------CCCccccCCCCcc-c-chhhh
Confidence 44568999999999999999999999999999999874432110000 00 0000000000000 0 00000
Q ss_pred hhHhhccceeeeeeEEEECCee--eeecCCCCCC--C-CCccceeecchHHHHHHHHHHHcCCCeE--EEeCe-EEEeee
Q 040732 143 DCVEEIDAHPVVGYALFKDGKI--TKTPYPLGNF--Q-ANVAGRSFHNGRFIQRMREKAASLPNVR--MEEGT-VTSLFE 214 (541)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~g~~--~~~~~~~~~~--~-~~~~~~~~~r~~l~~~L~~~~~~~~~v~--v~~~~-v~~l~~ 214 (541)
+.+.. +..+. .-..||.... . ........++.++.+.|.+.+... ++. ++.++ |+++..
T Consensus 75 ~~L~t------------n~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~f-gl~~~I~~~t~V~~V~~ 141 (461)
T PLN02172 75 ESLRT------------NLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREF-KIEEMVRFETEVVRVEP 141 (461)
T ss_pred hhhhc------------cCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHc-CCcceEEecCEEEEEee
Confidence 00000 00000 0001111000 0 000011245667889999999887 555 66766 999887
Q ss_pred eCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 215 ENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 215 ~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
.++.+ .|+....++...+..+|.||+|+|.++.
T Consensus 142 ~~~~w-~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 142 VDGKW-RVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred cCCeE-EEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 66543 2444433333334569999999998764
No 121
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=5.3e-09 Score=113.96 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeee-CCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEE-NGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~-~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+...|.+.+.+. +++++.++ +++++.+ ++++.||.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus 149 ~l~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 149 ALLHTLYQQNVAA-KTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHhc-CCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 4788888888765 89999887 9998865 57899998854 46766678899999999999864
No 122
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.04 E-value=2.9e-09 Score=115.68 Aligned_cols=64 Identities=22% Similarity=0.301 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCCeEEEeCe-EEEeeee-CCeEEEEEEEcCCCcEEEEEcC-EEEEecCCCCcccccc
Q 040732 188 FIQRMREKAASLPNVRMEEGT-VTSLFEE-NGIVKGVHYKTKDGQEHKSYAP-LTIVCDGGFSNLRRSL 253 (541)
Q Consensus 188 l~~~L~~~~~~~~~v~v~~~~-v~~l~~~-~~~v~gV~v~~~~g~~~~v~a~-lvV~AdG~~S~vR~~l 253 (541)
+...|.+.+++. +++++.++ +++++.+ +++|+||.+.. +|+...+.|+ -||.|+|.++.-.+++
T Consensus 215 ~~~~l~~~~~~~-gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-~~~~~~i~a~~aVilAtGGf~~N~em~ 281 (584)
T PRK12835 215 LVARLRLALKDA-GVPLWLDSPMTELITDPDGAVVGAVVER-EGRTLRIGARRGVILATGGFDHDMDWR 281 (584)
T ss_pred HHHHHHHHHHhC-CceEEeCCEEEEEEECCCCcEEEEEEEe-CCcEEEEEeceeEEEecCcccCCHHHH
Confidence 445566666664 89999997 9999875 68899998854 6666778897 6999999999754443
No 123
>PRK12839 hypothetical protein; Provisional
Probab=99.04 E-value=5.6e-09 Score=113.15 Aligned_cols=64 Identities=30% Similarity=0.394 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHcCCCeEEEeCe-EEEeeee-CCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 185 NGRFIQRMREKAASLPNVRMEEGT-VTSLFEE-NGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 185 r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~-~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
-..+...|.+.+.+. +++++.++ +++++.+ +++|+||.+...+|+...+.++.||.|+|+++.-
T Consensus 213 g~~l~~~L~~~a~~~-Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n 278 (572)
T PRK12839 213 GTALTGRLLRSADDL-GVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPND 278 (572)
T ss_pred HHHHHHHHHHHHHHC-CCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccC
Confidence 345777888888876 89999887 9998764 6889999987777764434468999999999873
No 124
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.03 E-value=5.8e-09 Score=112.02 Aligned_cols=66 Identities=26% Similarity=0.386 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcC-EEEEecCCCCcccccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAP-LTIVCDGGFSNLRRSL 253 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~-lvV~AdG~~S~vR~~l 253 (541)
.+...|.+.+.+.+++++..++ +++++.++++|.||.+.. +|+..++.|+ -||.|+|.++..++++
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~~n~~m~ 241 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVER-GGERRRVRARRGVLLAAGGFEQNDDMR 241 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEE-CCcEEEEEeCceEEEeCCCccCCHHHH
Confidence 3666677777666699999987 999998888999998754 5767778895 7999999987754443
No 125
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=3.6e-09 Score=115.39 Aligned_cols=62 Identities=18% Similarity=0.346 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeC-CeEEEEEEE-cCCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEEN-GIVKGVHYK-TKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~-~~v~gV~v~-~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+...|.+.+.+. ++++.+++ +++++.++ ++|.||.+. ..+|+...+.|+.||.|+|+++..
T Consensus 150 ~i~~~L~~~~~~~-gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 150 AILHTLYQQSLKH-NAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred HHHHHHHHHHhhc-CCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 4778888888775 89999887 99998765 789999875 457877788999999999999853
No 126
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.03 E-value=4.6e-09 Score=100.96 Aligned_cols=187 Identities=24% Similarity=0.284 Sum_probs=107.9
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHhh----CCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccC--chhhH
Q 040732 61 PESVAGPDVIVVGAGVAGAALAHTLGT----DGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQ--PGGYL 134 (541)
Q Consensus 61 ~~~~~~~dVvIVGaG~aGl~~A~~La~----~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~--~~~~~ 134 (541)
+.-+.+.||+|||||..|++.|+.|.+ .|++|+|+||+......+..-+++-+.|.. ...|.++ --+..
T Consensus 81 ~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQF-----SlpEnIqmSLF~a~ 155 (509)
T KOG2853|consen 81 EVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQF-----SLPENIQMSLFTAE 155 (509)
T ss_pred cccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeec-----ccchhhhhhhHHHH
Confidence 444568899999999999999999985 379999999998655433333333222211 1111111 00111
Q ss_pred HHH----HCCchhhHh-hccceeeeeeEEEEC-------------------------CeeeeecCCCCC--------CCC
Q 040732 135 KLV----ELGLDDCVE-EIDAHPVVGYALFKD-------------------------GKITKTPYPLGN--------FQA 176 (541)
Q Consensus 135 ~l~----~lgl~~~~~-~~~~~~~~g~~~~~~-------------------------g~~~~~~~~~~~--------~~~ 176 (541)
+|+ .+|+.|.-. .+...+ .|+-.... ....+.+||.-. .+.
T Consensus 156 Flr~a~ehl~~~d~~~vdl~f~P-~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~ 234 (509)
T KOG2853|consen 156 FLRNAREHLGILDSEQVDLNFFP-TGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGV 234 (509)
T ss_pred HHHHHHHhhccccCCCCCcccCC-CceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeeccc
Confidence 111 133221100 000111 11111110 011122333211 111
Q ss_pred CccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeee----------CC-------eEEEEEEEcCCCcEEEEEcCEE
Q 040732 177 NVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEE----------NG-------IVKGVHYKTKDGQEHKSYAPLT 239 (541)
Q Consensus 177 ~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~----------~~-------~v~gV~v~~~~g~~~~v~a~lv 239 (541)
...| .|+.-.|...+++.+..+ |+.+..|.|++.+.+ ++ ++.+|.++..|+...+++++++
T Consensus 235 e~EG-wfdpw~LLs~~rrk~~~l-Gv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~ 312 (509)
T KOG2853|consen 235 EKEG-WFDPWALLSGIRRKAITL-GVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALC 312 (509)
T ss_pred cccc-ccCHHHHHHHHHHHhhhh-cceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEE
Confidence 1123 366777999999999988 899999998887643 33 4566777777777788999999
Q ss_pred EEecCCCCc-ccccccC
Q 040732 240 IVCDGGFSN-LRRSLCN 255 (541)
Q Consensus 240 V~AdG~~S~-vR~~l~~ 255 (541)
|.|.|++|- +.++.++
T Consensus 313 V~aAGa~s~QvArlAgI 329 (509)
T KOG2853|consen 313 VNAAGAWSGQVARLAGI 329 (509)
T ss_pred EeccCccHHHHHHHhcc
Confidence 999999985 5565554
No 127
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.02 E-value=5.7e-09 Score=113.64 Aligned_cols=63 Identities=25% Similarity=0.368 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcC-EEEEecCCCCcccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAP-LTIVCDGGFSNLRR 251 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~-lvV~AdG~~S~vR~ 251 (541)
.+.+.|.+.+++. +++++.++ |+++..+++++.||.+...+++ ..+.++ .||.|+|.++.-..
T Consensus 215 ~l~~~L~~~~~~~-Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~-~~i~a~k~VVlAtGg~~~n~~ 279 (574)
T PRK12842 215 ALAARLAKSALDL-GIPILTGTPARELLTEGGRVVGARVIDAGGE-RRITARRGVVLACGGFSHDLA 279 (574)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEeeCCEEEEEEEEcCCce-EEEEeCCEEEEcCCCccchHH
Confidence 3666777777776 89999987 9999988889999988765554 446674 89999999985433
No 128
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.02 E-value=2.7e-09 Score=115.15 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeC------CeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEEN------GIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNLRR 251 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~------~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~vR~ 251 (541)
.+...|.+.+.+.++|+++.++ +++++.++ +++.||.+.+ .+|+...+.|+.||.|+|+++.+..
T Consensus 139 ~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~ 211 (536)
T PRK09077 139 AVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYL 211 (536)
T ss_pred HHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCC
Confidence 5778888888877899999997 88888653 7899998865 4677777899999999999997654
No 129
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.02 E-value=4.7e-09 Score=113.70 Aligned_cols=65 Identities=26% Similarity=0.337 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcC-EEEEecCCCCcccccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAP-LTIVCDGGFSNLRRSL 253 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~-lvV~AdG~~S~vR~~l 253 (541)
.+...|++.+++. ++++..++ +++++.++++|+||.+.. +|+..++.|+ -||.|+|+++.-+.++
T Consensus 209 ~~~~~L~~~~~~~-gv~v~~~t~v~~l~~~~g~v~Gv~~~~-~g~~~~i~A~~~VIlAtGG~~~n~~m~ 275 (557)
T PRK07843 209 ALAAGLRIGLQRA-GVPVLLNTPLTDLYVEDGRVTGVHAAE-SGEPQLIRARRGVILASGGFEHNEQMR 275 (557)
T ss_pred HHHHHHHHHHHcC-CCEEEeCCEEEEEEEeCCEEEEEEEEe-CCcEEEEEeceeEEEccCCcCcCHHHH
Confidence 3566777777776 89999997 999998888999998854 5666678896 6999999998855443
No 130
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.00 E-value=4.7e-09 Score=122.48 Aligned_cols=63 Identities=33% Similarity=0.448 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcC--CCeEEEeCe-EEEeeeeC---------CeEEEEEEEcC---CCcEEEEEcCEEEEecCCCCccc
Q 040732 188 FIQRMREKAASL--PNVRMEEGT-VTSLFEEN---------GIVKGVHYKTK---DGQEHKSYAPLTIVCDGGFSNLR 250 (541)
Q Consensus 188 l~~~L~~~~~~~--~~v~v~~~~-v~~l~~~~---------~~v~gV~v~~~---~g~~~~v~a~lvV~AdG~~S~vR 250 (541)
+.+.|.+.+++. .++++.+++ +++++.++ ++|+||.+... +|+...+.|+.||.|+|+++...
T Consensus 546 i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~ 623 (1167)
T PTZ00306 546 IMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDH 623 (1167)
T ss_pred HHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCc
Confidence 556666666532 489999997 99998753 27999999876 78877889999999999999754
No 131
>PLN02815 L-aspartate oxidase
Probab=98.99 E-value=3.9e-09 Score=114.40 Aligned_cols=63 Identities=17% Similarity=0.363 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeee-CC---eEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEE-NG---IVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~-~~---~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+...|.+.+.+.+++++++++ +++++.+ ++ ++.||.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus 156 ~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 156 EIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred HHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence 4778888888777799999987 8998865 33 388998754 57777778899999999999864
No 132
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=6.6e-09 Score=113.20 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeC----CeEEEEEEE-cCCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEEN----GIVKGVHYK-TKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~----~~v~gV~v~-~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+.+.|.+.+.+. +|++..++ +++++.++ +++.||.+. ..+|+...+.|+.||.|+|+++.+
T Consensus 141 ~i~~~L~~~~~~~-gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 141 MILQTLYQNCVKH-GVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHhc-CCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 4778888888766 89999987 99998655 789999874 356766678899999999999865
No 133
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.98 E-value=6.1e-09 Score=112.41 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeC--CeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEEN--GIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~--~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
.+...|.+.+.+.+++++++++ +++++.++ +++.||.+.. +|+...+.|+.||.|+|+++.
T Consensus 135 ~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 135 AIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLY-QGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred HHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEE-CCeEEEEEcCEEEEcCCCCcc
Confidence 4778888888766689999987 99998753 7899998753 666666889999999999865
No 134
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.97 E-value=2.7e-09 Score=113.21 Aligned_cols=59 Identities=31% Similarity=0.430 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRR 251 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~ 251 (541)
.+.+.|.+.+++. ++++.++.++++..+++++.||.+ +|+ .+.++.||.|+|++|....
T Consensus 121 ~i~~~L~~~~~~~-gv~i~~~~v~~l~~~~g~v~Gv~~---~g~--~i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 121 HIIKILYKHAREL-GVNFIRGFAEELAIKNGKAYGVFL---DGE--LLKFDATVIATGGFSGLFK 179 (466)
T ss_pred HHHHHHHHHHHhc-CCEEEEeEeEEEEeeCCEEEEEEE---CCE--EEEeCeEEECCCcCcCCCC
Confidence 5888888888776 888888788888877788877775 344 3669999999999998654
No 135
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.97 E-value=1.5e-08 Score=110.23 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEc-CEEEEecCCCCcccccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYA-PLTIVCDGGFSNLRRSL 253 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a-~lvV~AdG~~S~vR~~l 253 (541)
.+...|.+.+++. +++++.++ +++++.+++++.||.+.. +|+..++.| +.||.|+|+++...+++
T Consensus 222 ~l~~aL~~~~~~~-Gv~i~~~t~v~~Li~~~g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 222 ALIGRLLYSLRAR-GVRILTQTDVESLETDHGRVIGATVVQ-GGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEeeCCEEEEEEEec-CCeEEEEEccceEEECCCCcccCHHHH
Confidence 4777888888876 89999887 999987788999998754 566666776 78999999999865544
No 136
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.97 E-value=1.1e-08 Score=108.49 Aligned_cols=60 Identities=27% Similarity=0.332 Sum_probs=46.0
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 181 RSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 181 ~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
..++..++.+.|.+.+++. |+++++++ |+++.. ++ . +.+++++|+ ++||.||.|+|.+|.
T Consensus 178 g~i~P~~l~~~L~~~a~~~-Gv~i~~~t~V~~i~~-~~-~--~~v~t~~g~---v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALEL-GVEIHENTPMTGLEE-GQ-P--AVVRTPDGQ---VTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHc-CCEEECCCeEEEEee-CC-c--eEEEeCCcE---EECCEEEEccccccc
Confidence 4567788999999998887 89999987 888864 22 2 334556663 569999999999974
No 137
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.97 E-value=1e-08 Score=108.65 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=51.3
Q ss_pred eeecchHHHHHHHHHHHc----CC-CeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc-ccccc
Q 040732 181 RSFHNGRFIQRMREKAAS----LP-NVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN-LRRSL 253 (541)
Q Consensus 181 ~~~~r~~l~~~L~~~~~~----~~-~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~-vR~~l 253 (541)
..++...+.+.|.+.+++ .+ ++++++++ |+++..+++.+. .+.+++|+ ++||.||+|.|.+|. +.+.+
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~--~V~T~~G~---i~A~~VVvaAG~~S~~La~~~ 280 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLY--KIHTNRGE---IRARFVVVSACGYSLLFAQKM 280 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeE--EEEECCCE---EEeCEEEECcChhHHHHHHHh
Confidence 357778899999998887 53 28888887 999987755433 34455663 669999999999984 45555
Q ss_pred cC
Q 040732 254 CN 255 (541)
Q Consensus 254 ~~ 255 (541)
+.
T Consensus 281 Gi 282 (497)
T PTZ00383 281 GY 282 (497)
T ss_pred CC
Confidence 54
No 138
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.97 E-value=1.4e-08 Score=110.53 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEc-CEEEEecCCCCccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYA-PLTIVCDGGFSNLR 250 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a-~lvV~AdG~~S~vR 250 (541)
.|.+.|.+.+++. +++++.++ |++++.+++++.||.+...++ ..+++| +.||.|+|.++.-.
T Consensus 218 ~l~~~L~~~a~~~-Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~-~~~i~a~k~VVlAtGg~~~n~ 281 (581)
T PRK06134 218 ALVARLLKSAEDL-GVRIWESAPARELLREDGRVAGAVVETPGG-LQEIRARKGVVLAAGGFPHDP 281 (581)
T ss_pred HHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEEEEEEEECCc-EEEEEeCCEEEEcCCCcccCH
Confidence 4677888888887 89999887 999888788899998865444 455779 99999999998643
No 139
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.96 E-value=5e-09 Score=112.30 Aligned_cols=61 Identities=28% Similarity=0.496 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+.+.|.+.+. .++++++++ ++++..+++++.||.+...+|+...+.|+.||.|+|+++.+
T Consensus 131 ~i~~~L~~~~~--~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 131 NLLEHLLQELV--PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGGL 192 (510)
T ss_pred HHHHHHHHHHh--cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCccc
Confidence 47778887775 389999887 99998778889999887667776678899999999999863
No 140
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.96 E-value=1e-08 Score=105.61 Aligned_cols=45 Identities=36% Similarity=0.428 Sum_probs=36.8
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceee
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHV 112 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~ 112 (541)
+||+|||||++|+++|+.|+++|.+|+|+|+... ..+.++++...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~-~~gaS~~~~G~ 45 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR-AQGASVRNFGQ 45 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC-CCCcccccCce
Confidence 5999999999999999999999999999999863 33444444433
No 141
>PRK08275 putative oxidoreductase; Provisional
Probab=98.96 E-value=8.2e-09 Score=111.95 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeee-CCeEEEEEEE-cCCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEE-NGIVKGVHYK-TKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~-~~~v~gV~v~-~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+.+.|.+.+++. ++++.+++ +++++.+ ++++.||.+. ..+|+...+.|+.||.|+|+++.+
T Consensus 138 ~i~~~L~~~~~~~-gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 138 DIKKVLYRQLKRA-RVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHC-CCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 5778888888775 89999997 9999876 6788898864 356776678899999999998864
No 142
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.95 E-value=7.2e-09 Score=113.91 Aligned_cols=62 Identities=16% Similarity=0.318 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+...|.+.+.+. ++++++++ +++++.+++++.||.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus 159 ~l~~~L~~~~~~~-gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 159 TMLYAVDNEAIKL-GVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHhC-CCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 3666777777766 89999987 999998888999999875 57887778899999999999865
No 143
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.92 E-value=1.2e-08 Score=106.13 Aligned_cols=152 Identities=21% Similarity=0.277 Sum_probs=81.3
Q ss_pred EEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCC---cCCcceeeeeccccccc-cccccccCchh-hHHHHHCCchhh
Q 040732 70 IVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDR---IDGRRVHVIERDLMEPN-RIVGELLQPGG-YLKLVELGLDDC 144 (541)
Q Consensus 70 vIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~---~~~~~~~~~~~~~~~~~-~~~g~~l~~~~-~~~l~~lgl~~~ 144 (541)
+|||||++|+++|+.|+++|.+|+|+||.+..... +.+...+..+....... ...+. .+.. ...+..++..+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~--~~~~~~~~l~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPR--NGKFLRSALSRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCC--CcHHHHHHHHhCCHHHH
Confidence 69999999999999999999999999998754321 11112222111000000 00000 0000 112222222222
Q ss_pred HhhccceeeeeeEEEE--CCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEE
Q 040732 145 VEEIDAHPVVGYALFK--DGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKG 221 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~g 221 (541)
+. +....|..+.. .+. .||. .-....+.+.|.+.+++. +++++.++ |+++..+++.
T Consensus 79 ~~---~~~~~Gv~~~~~~~g~----~~p~----------~~~a~~v~~~L~~~l~~~-gv~i~~~~~V~~i~~~~~~--- 137 (400)
T TIGR00275 79 ID---FFESLGLELKVEEDGR----VFPC----------SDSAADVLDALLNELKEL-GVEILTNSKVKSIKKDDNG--- 137 (400)
T ss_pred HH---HHHHcCCeeEEecCCE----eECC----------CCCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEecCCe---
Confidence 11 11111222211 111 1111 012346788888888876 89999886 8888665542
Q ss_pred EEEEcCCCcEEEEEcCEEEEecCCCC
Q 040732 222 VHYKTKDGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 222 V~v~~~~g~~~~v~a~lvV~AdG~~S 247 (541)
+.++. ++++ +.+|.||.|+|.+|
T Consensus 138 ~~v~~-~~~~--i~ad~VIlAtG~~s 160 (400)
T TIGR00275 138 FGVET-SGGE--YEADKVILATGGLS 160 (400)
T ss_pred EEEEE-CCcE--EEcCEEEECCCCcc
Confidence 23333 3443 56999999999987
No 144
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.91 E-value=1.6e-07 Score=88.62 Aligned_cols=170 Identities=17% Similarity=0.229 Sum_probs=102.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCC------CcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHH
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDG------RRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLV 137 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G------~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~ 137 (541)
.....|+|||||+.|.++|+.|++++ +.|+|+|+.. .....+|..-.+.. ..-+|.-+..|.
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~-IA~gaSGkasgfLa-----------~wc~~s~~~~La 75 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE-IAGGASGKASGFLA-----------KWCQPSIIQPLA 75 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc-cccccccccchhhH-----------hhhCCcccchhh
Confidence 44578999999999999999999987 7999999875 33334443332221 122222122222
Q ss_pred HC------CchhhHhhccceeeeeeEE---E------ECCeeeeecCC-----------CCCCCCCccceeecchHHHHH
Q 040732 138 EL------GLDDCVEEIDAHPVVGYAL---F------KDGKITKTPYP-----------LGNFQANVAGRSFHNGRFIQR 191 (541)
Q Consensus 138 ~l------gl~~~~~~~~~~~~~g~~~---~------~~g~~~~~~~~-----------~~~~~~~~~~~~~~r~~l~~~ 191 (541)
.+ ++.+.++.. ...+++- | .+-+..+.+-. ....+.......+|...|.+.
T Consensus 76 ~lsfkLh~~LsdeydGv---nnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~ 152 (380)
T KOG2852|consen 76 TLSFKLHEELSDEYDGV---NNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHF 152 (380)
T ss_pred HHHHHHHHHHHHhhcCc---ccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHH
Confidence 11 223333322 2222211 1 11110000000 001122223456888999999
Q ss_pred HHHHHHcCCCeEEEeCeEEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 192 MREKAASLPNVRMEEGTVTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 192 L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
++..+.+.++|++..|.|.++..+.+++.+|....+.+.......+.+|.+.|.|+.
T Consensus 153 i~sea~k~~~V~lv~Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 153 ILSEAEKRGGVKLVFGKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred HHHHHHhhcCeEEEEeeeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 999999998999999999999877777766655433343444568899999999974
No 145
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.91 E-value=1.5e-08 Score=110.49 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=46.5
Q ss_pred HHHHHHHHHHc---CCCeEEEeCe-EEEeeee-CCeEEEEEEEcC-CCcEEEEEcCEEEEecCCCCcc
Q 040732 188 FIQRMREKAAS---LPNVRMEEGT-VTSLFEE-NGIVKGVHYKTK-DGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 188 l~~~L~~~~~~---~~~v~v~~~~-v~~l~~~-~~~v~gV~v~~~-~g~~~~v~a~lvV~AdG~~S~v 249 (541)
+...|.+.+.+ .++|++++++ +++++.+ ++++.||.+.+. +|+...+.|+.||.|+|+++.+
T Consensus 131 i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 131 LLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNV 198 (603)
T ss_pred HHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc
Confidence 44455544432 3589999997 9999875 468999998763 6776678899999999998764
No 146
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.91 E-value=1.8e-07 Score=100.58 Aligned_cols=63 Identities=24% Similarity=0.283 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccc
Q 040732 186 GRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSL 253 (541)
Q Consensus 186 ~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l 253 (541)
..+.+.|.+.+++. +++++.++ |+++..+++++++|+ +++|++ +.||.||.|.+......+.+
T Consensus 219 ~~l~~al~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~V~--~~~g~~--~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDL-GGELRLNAEVIRIETEGGRATAVH--LADGER--LDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHC-CCEEEECCeEEEEEeeCCEEEEEE--ECCCCE--EECCEEEECCcHHHHHHHhc
Confidence 35788888888887 78999887 999987777766665 466765 45999999988766665544
No 147
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.90 E-value=1.6e-08 Score=108.55 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+.+.|.+.+.+.++++++.++ ++++..+++++.||.+... +....+.|+.||.|+|+++.+
T Consensus 137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~-~~~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 137 AIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATA-GGPVVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeC-CeEEEEECCEEEEcCCCCcCC
Confidence 5788888888776689999997 9998877888999887653 334467899999999998753
No 148
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.6e-08 Score=100.31 Aligned_cols=114 Identities=26% Similarity=0.323 Sum_probs=74.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCc-EEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRR-VHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~-V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
..|||+||||||||++||+.++|+|++ ++|+|+.. +.. + +....
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg-------------------------~---------~~~~~ 46 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGG-------------------------Q---------LTKTT 46 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCC-------------------------c---------cccce
Confidence 468999999999999999999999998 77777653 110 0 00000
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGVH 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV~ 223 (541)
.+ -.||.. +.. +.-..|.+.+++.+... ++++....|.++...++ ...
T Consensus 47 --------~v-------------enypg~--~~~-----~~g~~L~~~~~~~a~~~-~~~~~~~~v~~v~~~~~---~F~ 94 (305)
T COG0492 47 --------DV-------------ENYPGF--PGG-----ILGPELMEQMKEQAEKF-GVEIVEDEVEKVELEGG---PFK 94 (305)
T ss_pred --------ee-------------cCCCCC--ccC-----CchHHHHHHHHHHHhhc-CeEEEEEEEEEEeecCc---eEE
Confidence 00 011100 000 12235778888888755 88888877887776654 245
Q ss_pred EEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 224 YKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 224 v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
+++.+|+ ++|+.||.|+|....
T Consensus 95 v~t~~~~---~~ak~vIiAtG~~~~ 116 (305)
T COG0492 95 VKTDKGT---YEAKAVIIATGAGAR 116 (305)
T ss_pred EEECCCe---EEEeEEEECcCCccc
Confidence 6667776 459999999998754
No 149
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.89 E-value=2.7e-09 Score=100.20 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=42.6
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 183 FHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 183 ~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
..+.++.+.|.+.+++. ++.+..++ |+++..+++. ..++.+++++ ++|+.||.|+|..|.
T Consensus 79 ~~~~~v~~yl~~~~~~~-~l~i~~~~~V~~v~~~~~~---w~v~~~~~~~--~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERF-GLEIRFNTRVESVRRDGDG---WTVTTRDGRT--IRADRVVLATGHYSH 139 (203)
T ss_dssp EBHHHHHHHHHHHHHHT-TGGEETS--EEEEEEETTT---EEEEETTS-E--EEEEEEEE---SSCS
T ss_pred CCHHHHHHHHHHHHhhc-CcccccCCEEEEEEEeccE---EEEEEEecce--eeeeeEEEeeeccCC
Confidence 55667888888888887 77788877 9999988775 4455677743 559999999998765
No 150
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.89 E-value=2.3e-08 Score=99.79 Aligned_cols=112 Identities=25% Similarity=0.320 Sum_probs=74.4
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
|||+|||||++|+++|..|++.|++|+|+|+.. ... . .... ..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg------------------~----~~~~------------~~~- 44 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGG------------------Q----LTTT------------TEV- 44 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCc------------------c----eeec------------ccc-
Confidence 699999999999999999999999999999875 111 0 0000 000
Q ss_pred hccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEEEEEc
Q 040732 147 EIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGVHYKT 226 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV~v~~ 226 (541)
..+|. .. ..+...++...+++.+++. +++++.++|+++..+++. +.+..
T Consensus 45 --------------------~~~~~--~~-----~~~~~~~~~~~l~~~~~~~-gv~~~~~~v~~v~~~~~~---~~v~~ 93 (300)
T TIGR01292 45 --------------------ENYPG--FP-----EGISGPELMEKMKEQAVKF-GAEIIYEEVIKVDLSDRP---FKVKT 93 (300)
T ss_pred --------------------cccCC--CC-----CCCChHHHHHHHHHHHHHc-CCeEEEEEEEEEEecCCe---eEEEe
Confidence 00000 00 0122235777788888777 788888668888776542 34445
Q ss_pred CCCcEEEEEcCEEEEecCCCC
Q 040732 227 KDGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 227 ~~g~~~~v~a~lvV~AdG~~S 247 (541)
++|.+ +++|.||.|+|...
T Consensus 94 ~~~~~--~~~d~liiAtG~~~ 112 (300)
T TIGR01292 94 GDGKE--YTAKAVIIATGASA 112 (300)
T ss_pred CCCCE--EEeCEEEECCCCCc
Confidence 56654 56999999999864
No 151
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.87 E-value=1.8e-08 Score=102.92 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=77.4
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh-hH
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD-CV 145 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~-~~ 145 (541)
.||+|||||++|+.+|+.|+++|++|+|+|+.+..... ......+.. +.+ ....++...+...|++. .+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~--a~~~~~~~e------rvc--a~Slgs~~ll~a~Gll~~em 72 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTP--AHHTDGFAE------LVC--SNSFRSDSLTNAVGLLKEEM 72 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcc--cccCccccc------ccc--chhhhhhhHHhcCCchHHHH
Confidence 48999999999999999999999999999987643221 000100000 222 24455566777888875 33
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEee
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLF 213 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~ 213 (541)
...+. . ....... ...| ......++|..|.+.|.+.+.++|+++++.++|+++.
T Consensus 73 ~~lgs-----l-~~~aad~--~~vP------A~gaLvvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l~ 126 (436)
T PRK05335 73 RRLGS-----L-IMEAADA--HRVP------AGGALAVDREGFSEYVTEALENHPLITVIREEVTEIP 126 (436)
T ss_pred HHhcc-----h-heecccc--cCCC------CccceecCHHHHHHHHHHHHHcCCCcEEEccchhccc
Confidence 32211 1 1111100 0111 1112467888899999999999999999876677764
No 152
>PLN02612 phytoene desaturase
Probab=98.87 E-value=8.1e-07 Score=96.50 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=34.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
..+.+|+|||||++|+++|+.|+++|++|+|+|+...
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~ 127 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDV 127 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3568999999999999999999999999999999864
No 153
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.86 E-value=1.6e-08 Score=107.64 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=34.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
|+.+|||+||||||+|+.+|..|++.|.+|+|+|+.+
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3457999999999999999999999999999999864
No 154
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.86 E-value=3e-08 Score=107.68 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCCeEEEeCe-EEEeeeeC---CeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCc
Q 040732 188 FIQRMREKAASLPNVRMEEGT-VTSLFEEN---GIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 188 l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~---~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
+...+...+.+. +++++.++ +++++.++ +++.||.+.+ .+|+...+.|+.||.|+|+++.
T Consensus 128 ~~r~l~~~l~~~-~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 128 YKPIVAEAAKNA-LGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred HHHHHHHHHHhC-CCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 445555555554 57888886 99998754 6899998754 5777777899999999999974
No 155
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.85 E-value=1.8e-08 Score=107.45 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=33.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
|...|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 356799999999999999999999999999999985
No 156
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.82 E-value=4.7e-08 Score=99.41 Aligned_cols=64 Identities=25% Similarity=0.402 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCC-eEEEEEEEcCCCcEEEEEcCEEEEecCCCCccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENG-IVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLR 250 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~-~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR 250 (541)
.+.+.|.+.+++.|+|++.++. +.++..+++ .+.||.+...+++..+++++.||.|+|+.+.+=
T Consensus 134 ~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 134 EIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccc
Confidence 4789999999999999999996 899988887 555898876655567788999999999988763
No 157
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.82 E-value=6.2e-08 Score=104.33 Aligned_cols=113 Identities=22% Similarity=0.324 Sum_probs=76.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
...|||+||||||+|+++|..|++.|++|+|+|+.. .. . + .. ..++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~--GG------------------~-~---~~--------~~~~~- 255 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF--GG------------------Q-V---LD--------TMGIE- 255 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC--CC------------------e-e---ec--------cCccc-
Confidence 457999999999999999999999999999997531 11 0 0 00 00000
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGV 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV 222 (541)
+ ...++ .....++.+.|.+.++++ +++++.++ |+++..+++. .
T Consensus 256 -----------------~----~~~~~-----------~~~~~~l~~~l~~~~~~~-gv~i~~~~~V~~I~~~~~~---~ 299 (517)
T PRK15317 256 -----------------N----FISVP-----------ETEGPKLAAALEEHVKEY-DVDIMNLQRASKLEPAAGL---I 299 (517)
T ss_pred -----------------c----cCCCC-----------CCCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCe---E
Confidence 0 00000 012235788888888888 79998875 8888775542 3
Q ss_pred EEEcCCCcEEEEEcCEEEEecCCCC
Q 040732 223 HYKTKDGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 223 ~v~~~~g~~~~v~a~lvV~AdG~~S 247 (541)
.+..++|++ +.++.||.|+|...
T Consensus 300 ~V~~~~g~~--i~a~~vViAtG~~~ 322 (517)
T PRK15317 300 EVELANGAV--LKAKTVILATGARW 322 (517)
T ss_pred EEEECCCCE--EEcCEEEECCCCCc
Confidence 444566764 55999999999865
No 158
>PLN02576 protoporphyrinogen oxidase
Probab=98.82 E-value=1.9e-06 Score=92.67 Aligned_cols=39 Identities=41% Similarity=0.469 Sum_probs=34.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhC-CCcEEEEecCCCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTD-GRRVHVIERDMTQP 102 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~-G~~V~viEr~~~~~ 102 (541)
..++||+|||||++||++|+.|+++ |++|+|+|+++...
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 3456999999999999999999999 99999999987443
No 159
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.81 E-value=4.7e-08 Score=102.64 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=36.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCc-EEEEecCCCCC
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRR-VHVIERDMTQP 102 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~-V~viEr~~~~~ 102 (541)
++..+||+|||||++|+++|+.|.++|.. ++|+||+....
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~G 45 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG 45 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcC
Confidence 35678999999999999999999999998 99999997443
No 160
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.80 E-value=7.8e-08 Score=99.83 Aligned_cols=147 Identities=22% Similarity=0.204 Sum_probs=84.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
+...+|+|||||||||++|..|.++|++|+|+||.......+.- ..-.+..+..-.+.|+ +.+..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y--------------~~~~~~~~ss~Y~~l~-tn~pK 68 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY--------------TENVEVVHSSVYKSLR-TNLPK 68 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEee--------------cCcccccccchhhhhh-ccCCh
Confidence 45679999999999999999999999999999999754331100 0000000000011110 00000
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCC-CeEEEeCe-EEEeeeeC-CeEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLP-NVRMEEGT-VTSLFEEN-GIVK 220 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~v~v~~~~-v~~l~~~~-~~v~ 220 (541)
+ -..|+.-.++.....+..++.++.+.|...|+..+ ...+++++ |..+...+ +.+
T Consensus 69 -------------------e--~~~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW- 126 (448)
T KOG1399|consen 69 -------------------E--MMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW- 126 (448)
T ss_pred -------------------h--hhcCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCce-
Confidence 0 01111111112222333556689999999998763 23566666 78887766 554
Q ss_pred EEEEEcCCCcEEEEEcCEEEEecCCCC
Q 040732 221 GVHYKTKDGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 221 gV~v~~~~g~~~~v~a~lvV~AdG~~S 247 (541)
.|..+++.+.....-+|.||+|+|.+.
T Consensus 127 ~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 127 RVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred eEEEecCCcceeEEEeeEEEEcccCcC
Confidence 466555444222334999999999983
No 161
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.80 E-value=1.6e-06 Score=92.27 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=32.6
Q ss_pred CcEEEECCChHHHHHHHHHhhC----CCcEEEEecCCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTD----GRRVHVIERDMTQ 101 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~----G~~V~viEr~~~~ 101 (541)
.||+|||||++||++|+.|+++ |++|+|+|+++..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV 41 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence 5899999999999999999998 9999999998744
No 162
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.79 E-value=4.6e-08 Score=111.73 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcC---CCeEEEeCe-EEEeeeeCCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcc
Q 040732 188 FIQRMREKAASL---PNVRMEEGT-VTSLFEENGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 188 l~~~L~~~~~~~---~~v~v~~~~-v~~l~~~~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
+...|.+.+.+. .++.+.... +++++.+++++.||.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus 141 i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 141 VKKALYRVLRQRSMRERIRIENRLMPVRVLTEGGRAVGAAALNTRTGEFVTVGAKAVILATGPCGRL 207 (897)
T ss_pred HHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeCCEEEEEEEEecCCCcEEEEECCEEEECCCccccC
Confidence 445555555433 268888776 788888788999998654 57887788999999999999865
No 163
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.77 E-value=7.9e-08 Score=104.25 Aligned_cols=114 Identities=20% Similarity=0.251 Sum_probs=73.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
...|||+||||||||+++|..|+++|++|+|+|+.. ... ......
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG----------------------~~~~~~------------ 46 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGG----------------------QITITS------------ 46 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCc----------------------eEEecc------------
Confidence 456999999999999999999999999999999853 111 000000
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGVH 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV~ 223 (541)
.+ ..++.. ..+....+.+.+++.+++. ++++..++|+++..++. . ..
T Consensus 47 ~i---------------------~~~pg~--------~~~~~~~l~~~l~~~~~~~-gv~~~~~~V~~i~~~~~-~--~~ 93 (555)
T TIGR03143 47 EV---------------------VNYPGI--------LNTTGPELMQEMRQQAQDF-GVKFLQAEVLDVDFDGD-I--KT 93 (555)
T ss_pred cc---------------------ccCCCC--------cCCCHHHHHHHHHHHHHHc-CCEEeccEEEEEEecCC-E--EE
Confidence 00 000100 0022235677777777776 78887777888765443 2 23
Q ss_pred EEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 224 YKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 224 v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
+.+.+|+ +.++.||.|+|.+..
T Consensus 94 V~~~~g~---~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 94 IKTARGD---YKTLAVLIATGASPR 115 (555)
T ss_pred EEecCCE---EEEeEEEECCCCccC
Confidence 3344443 458999999998754
No 164
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.76 E-value=1.9e-06 Score=91.55 Aligned_cols=73 Identities=26% Similarity=0.249 Sum_probs=46.7
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeee--eccccccccccccccCchhhHHHHHCCchhh
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVI--ERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
+|+|||||++||++|+.|+++|++|+|+|+.+... |+..... +...++.....-....++..+.++++|+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~G----G~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLG----GKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC----CCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence 58999999999999999999999999999987433 2211110 0000000000001234677788899998643
No 165
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.75 E-value=6e-08 Score=103.16 Aligned_cols=36 Identities=39% Similarity=0.534 Sum_probs=33.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+..|||+||||||+|+++|+.|+++|.+|+|+||..
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~ 38 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR 38 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 356999999999999999999999999999999965
No 166
>PRK07233 hypothetical protein; Provisional
Probab=98.74 E-value=1.2e-06 Score=92.47 Aligned_cols=35 Identities=37% Similarity=0.534 Sum_probs=32.4
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQP 102 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~ 102 (541)
+|+|||||++||++|+.|+++|++|+|+|+.+...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~G 35 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG 35 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence 59999999999999999999999999999998443
No 167
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.73 E-value=1.2e-07 Score=101.92 Aligned_cols=113 Identities=21% Similarity=0.331 Sum_probs=74.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
...+||+||||||||+++|..|++.|++|+|+|... .. . ... ..++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~--GG------------------~----~~~--------~~~~~- 256 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI--GG------------------Q----VKD--------TVGIE- 256 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC--CC------------------c----ccc--------CcCcc-
Confidence 457999999999999999999999999999997431 11 0 000 00000
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGV 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV 222 (541)
. + ...+ .....++.+.+.+.+++. +++++.++ |+++..+++. +
T Consensus 257 ---~--------~----------~~~~-----------~~~~~~l~~~l~~~l~~~-gv~i~~~~~V~~I~~~~~~---~ 300 (515)
T TIGR03140 257 ---N--------L----------ISVP-----------YTTGSQLAANLEEHIKQY-PIDLMENQRAKKIETEDGL---I 300 (515)
T ss_pred ---c--------c----------cccC-----------CCCHHHHHHHHHHHHHHh-CCeEEcCCEEEEEEecCCe---E
Confidence 0 0 0000 011235777788888777 89998875 8888765542 3
Q ss_pred EEEcCCCcEEEEEcCEEEEecCCCC
Q 040732 223 HYKTKDGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 223 ~v~~~~g~~~~v~a~lvV~AdG~~S 247 (541)
.+..++|+. +.+|.+|.|+|...
T Consensus 301 ~v~~~~g~~--i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 301 VVTLESGEV--LKAKSVIVATGARW 323 (515)
T ss_pred EEEECCCCE--EEeCEEEECCCCCc
Confidence 444566764 56999999999864
No 168
>PLN02487 zeta-carotene desaturase
Probab=98.73 E-value=6.1e-06 Score=88.97 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=49.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCc------CCcceeeeeccccccccccccccCchhhHHHHH
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRI------DGRRVHVIERDLMEPNRIVGELLQPGGYLKLVE 138 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~ 138 (541)
...+|+|||||++|+++|+.|+++|++|+|+|+.+...... +|..+ + ..-..-....++..+.+++
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~---e-----~G~h~~~~~~~~~~~ll~~ 145 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHI---E-----MGLHVFFGCYNNLFRLMKK 145 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEE---e-----cceeEecCCcHHHHHHHHh
Confidence 34699999999999999999999999999999987543211 11111 0 0000000124667788899
Q ss_pred CCchhhH
Q 040732 139 LGLDDCV 145 (541)
Q Consensus 139 lgl~~~~ 145 (541)
+|+.+.+
T Consensus 146 LGl~~~~ 152 (569)
T PLN02487 146 VGADENL 152 (569)
T ss_pred cCCcccc
Confidence 9987654
No 169
>PRK14694 putative mercuric reductase; Provisional
Probab=98.73 E-value=7.4e-08 Score=102.56 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=33.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
..+|||+||||||+|+++|..|++.|.+|+|||+.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~ 38 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG 38 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 46799999999999999999999999999999986
No 170
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.73 E-value=2.7e-06 Score=90.55 Aligned_cols=35 Identities=34% Similarity=0.431 Sum_probs=32.2
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQP 102 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~ 102 (541)
+|+|||||++|+++|+.|+++|++|+|+|+.+...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 58999999999999999999999999999987543
No 171
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.71 E-value=4.6e-08 Score=93.52 Aligned_cols=62 Identities=27% Similarity=0.531 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCC-eEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 188 FIQRMREKAASLPN-VRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 188 l~~~L~~~~~~~~~-v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
|...|.+.+.+.|. +.+..++ |+++.++++.|.||.+.+.+|+...+.++-||.|+|+++--
T Consensus 145 L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ys 208 (477)
T KOG2404|consen 145 LSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYS 208 (477)
T ss_pred HHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCcC
Confidence 44445555555554 5666665 99999999999999999999988778899999999999853
No 172
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.71 E-value=9.7e-08 Score=101.50 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=32.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
++|||+||||||+|+++|..++++|.+|+|+|+..
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~ 36 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 35999999999999999999999999999999753
No 173
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.71 E-value=1.2e-07 Score=98.85 Aligned_cols=76 Identities=18% Similarity=0.178 Sum_probs=56.0
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc-ccccccCCCc
Q 040732 181 RSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN-LRRSLCNPKV 258 (541)
Q Consensus 181 ~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~-vR~~l~~~~~ 258 (541)
..++...+.+.|...++++ |+.++++. |+++...+++..||+ +.-|. |++..+|+|+|.|.. |-++.+.+.+
T Consensus 182 G~~DP~~lC~ala~~A~~~-GA~viE~cpV~~i~~~~~~~~gVe--T~~G~---iet~~~VNaaGvWAr~Vg~m~gvkvP 255 (856)
T KOG2844|consen 182 GVMDPAGLCQALARAASAL-GALVIENCPVTGLHVETDKFGGVE--TPHGS---IETECVVNAAGVWAREVGAMAGVKVP 255 (856)
T ss_pred cccCHHHHHHHHHHHHHhc-CcEEEecCCcceEEeecCCcccee--ccCcc---eecceEEechhHHHHHhhhhcCCccc
Confidence 3467778999999999998 88888888 999987776666666 55666 569999999999963 3334444444
Q ss_pred cccc
Q 040732 259 DIPS 262 (541)
Q Consensus 259 ~~~~ 262 (541)
-.+.
T Consensus 256 L~p~ 259 (856)
T KOG2844|consen 256 LVPM 259 (856)
T ss_pred ceee
Confidence 4333
No 174
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.71 E-value=1e-07 Score=98.18 Aligned_cols=123 Identities=20% Similarity=0.242 Sum_probs=74.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh-hH
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD-CV 145 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~-~~ 145 (541)
.||+|||||++|+.+|+.|+++|++|+|+|+++....... ....+.. +.+ ....++...++..|++. .+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~--~~~~~~e------lvc--s~Slgg~~l~~a~Gil~~ei 70 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAH--HTEDLAE------LVC--SNSLGAKALDRAAGLLKTEM 70 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchh--hhhhhhh------hcc--cccccchhHHhccCcHHHHH
Confidence 4899999999999999999999999999998764322000 0000000 111 13344556666777664 22
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEee
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLF 213 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~ 213 (541)
...+. . .........+ + ......++|..+.+.+.+.+.+++++++..+.|+++.
T Consensus 71 ~~lg~-----l-~~~~ad~~~I--p------agg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~ 124 (433)
T TIGR00137 71 RQLSS-----L-IITAADRHAV--P------AGGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIP 124 (433)
T ss_pred hhcCe-----e-eeehhhhhCC--C------CCceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEc
Confidence 22111 1 1111111111 1 1123567999999999999999999998877666554
No 175
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.69 E-value=2.1e-07 Score=99.08 Aligned_cols=35 Identities=34% Similarity=0.466 Sum_probs=32.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..|||+||||||+|+++|..|+++|.+|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46999999999999999999999999999999864
No 176
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.69 E-value=1.7e-05 Score=84.15 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=31.5
Q ss_pred cEEEECCChHHHHHHHHHhhCC--CcEEEEecCCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDG--RRVHVIERDMTQ 101 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G--~~V~viEr~~~~ 101 (541)
+|+|||||++||++|+.|+++| ++|+|+|+++..
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~ 37 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRL 37 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence 6999999999999999999988 899999998744
No 177
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.69 E-value=1.4e-07 Score=100.54 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCC
Q 040732 186 GRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGG 245 (541)
Q Consensus 186 ~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~ 245 (541)
+.+.+.|.+.+++. |++|+.+. |+++..++++ ++++.+.+|+ .+++|.||.+-..
T Consensus 224 ~al~~aL~~~~~~~-Gg~I~~~~~V~~I~v~~g~--g~~~~~~~g~--~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREH-GGEIRTGAEVSQILVEGGK--GVGVRTSDGE--NIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHc-CCEEECCCceEEEEEeCCc--ceEEeccccc--eeccceeEecCch
Confidence 35888899999888 89999997 9999998887 5666677773 4569999887766
No 178
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.68 E-value=2.1e-07 Score=94.59 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=55.9
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCc
Q 040732 180 GRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 180 ~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
|.-++-+.|.+.|.+.+.+.++++++.++ |+++.+.++..+.|++++ .+|+..+++|+.|++..|+.|-
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL 245 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH
Confidence 45677788999999999888899999998 999998765534466654 4677778999999999999884
No 179
>PLN02507 glutathione reductase
Probab=98.68 E-value=1.8e-07 Score=100.10 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=32.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
..+|||+||||||+|+.+|..++++|.+|+|+|+.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 45799999999999999999999999999999973
No 180
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.68 E-value=2e-07 Score=98.20 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeee--CCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEE--NGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSL 253 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~--~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l 253 (541)
.+.+.|.+.+++. +++++.++ |++++.+ ++.+.+|... .++ .++.|+.||.|+|.++..+.++
T Consensus 124 ~l~~~L~~~a~~~-Gv~i~~~~~v~~l~~~~~~g~v~gv~~~-~~~--~~i~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 124 ALTNALYSSAERL-GVEIRYGIAVDRIPPEAFDGAHDGPLTT-VGT--HRITTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHHHc-CCEEEeCCEEEEEEecCCCCeEEEEEEc-CCc--EEEEcCEEEEcCCCcccCHHHH
Confidence 4788888888887 89999887 9998876 5677777652 222 3467999999999999876654
No 181
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.67 E-value=2.2e-07 Score=98.36 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=31.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
+|||+||||||+|+++|+.++++|.+|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999985
No 182
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.66 E-value=1.4e-05 Score=85.21 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHhhC------CCcEEEEecCCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTD------GRRVHVIERDMTQ 101 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~------G~~V~viEr~~~~ 101 (541)
+|+|||||++||++|+.|++. |.+|+|+|+++..
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~ 42 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYL 42 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCc
Confidence 699999999999999999986 4899999999743
No 183
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.66 E-value=6.6e-07 Score=94.78 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeee--C--CeEEEEEEEcCC-CcEE-EEEcCEEEEecCCCCc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEE--N--GIVKGVHYKTKD-GQEH-KSYAPLTIVCDGGFSN 248 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~--~--~~v~gV~v~~~~-g~~~-~v~a~lvV~AdG~~S~ 248 (541)
.+..-|.+.+++. ||+++.++ |+++..+ + +.|+|+.+..++ ++.+ ....|+||.++|+...
T Consensus 227 SLV~PL~~~Le~~-GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 227 SLVLPLIKYLEDH-GVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 4778888888888 99999998 9999874 3 568888886422 2222 2458999999998754
No 184
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.66 E-value=1.3e-07 Score=99.92 Aligned_cols=35 Identities=37% Similarity=0.543 Sum_probs=33.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+.|||+||||||+|+++|+.|+++|.+|+|+|+.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 46999999999999999999999999999999975
No 185
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.65 E-value=1.7e-07 Score=100.03 Aligned_cols=34 Identities=35% Similarity=0.404 Sum_probs=32.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEec
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIER 97 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr 97 (541)
...|||+||||||+|+++|+.+++.|.+|+|+|+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 3469999999999999999999999999999998
No 186
>PRK06116 glutathione reductase; Validated
Probab=98.65 E-value=2.5e-07 Score=98.11 Aligned_cols=36 Identities=33% Similarity=0.477 Sum_probs=33.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
|+.+|||+||||||+|+++|+.|+++|.+|+|+|+.
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 345799999999999999999999999999999985
No 187
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.63 E-value=1.6e-07 Score=100.56 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCC-eEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcccc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENG-IVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNLRR 251 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~-~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~vR~ 251 (541)
.+...|.+.+.+..+++++... ++++..+++ .+.||...+ .+|+...++++-||.|+|+...+..
T Consensus 139 ~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~ 206 (562)
T COG1053 139 ELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYP 206 (562)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCceEEEe
Confidence 4778888888876577777776 899986644 377877654 5677777889999999999984433
No 188
>PRK13748 putative mercuric reductase; Provisional
Probab=98.61 E-value=3.4e-07 Score=99.91 Aligned_cols=34 Identities=38% Similarity=0.435 Sum_probs=32.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
.+||||||||||+|+++|..|+++|.+|+|||+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4699999999999999999999999999999986
No 189
>PRK10262 thioredoxin reductase; Provisional
Probab=98.60 E-value=6.3e-07 Score=90.60 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=32.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
+..+||+||||||||+++|..|+++|++|+++|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 46789999999999999999999999999999964
No 190
>PRK07208 hypothetical protein; Provisional
Probab=98.60 E-value=9.1e-07 Score=94.66 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=35.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
|+...||+|||||++||++|+.|+++|++|+|+|+.+..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~ 39 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVV 39 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 467789999999999999999999999999999998744
No 191
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.59 E-value=5.6e-07 Score=86.05 Aligned_cols=55 Identities=27% Similarity=0.411 Sum_probs=46.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhC--CCcEEEEecCCCCCCCcCCcceeeeecccc
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTD--GRRVHVIERDMTQPDRIDGRRVHVIERDLM 118 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~--G~~V~viEr~~~~~~~~~~~~~~~~~~~~~ 118 (541)
..+||.||||||+.|++.|.+|.-+ +.+|.|+|+..+.....+|.....+|...+
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIY 102 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIY 102 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeee
Confidence 5789999999999999999999865 899999999988777777777777665443
No 192
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=5.3e-08 Score=99.86 Aligned_cols=153 Identities=22% Similarity=0.273 Sum_probs=90.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccc-cccccccCchhhHHHHHCCc-
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPN-RIVGELLQPGGYLKLVELGL- 141 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~l~~~~~~~l~~lgl- 141 (541)
+..|||||||||-||+-||.+.+|.|.+++++--....-. ..+++|. .+.|-.. -++.++.||-
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig-----------~msCNPaIGG~~KG~---lvrEIDALGG~ 67 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIG-----------EMSCNPAIGGPGKGH---LVREIDALGGL 67 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCcee-----------ecccccccCCcccce---eEEeehhccch
Confidence 3569999999999999999999999999999976542111 0000000 0000000 0112223321
Q ss_pred hhhHhhccceeeeeeEE--EECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCC-e
Q 040732 142 DDCVEEIDAHPVVGYAL--FKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENG-I 218 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~-~ 218 (541)
...... ..++.+ .+..+...+. ..-...++..+.+.+++.+...+|..++++.|++++.+++ +
T Consensus 68 Mg~~~D-----~~~IQ~r~LN~sKGPAVr---------a~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~ 133 (621)
T COG0445 68 MGKAAD-----KAGIQFRMLNSSKGPAVR---------APRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQR 133 (621)
T ss_pred HHHhhh-----hcCCchhhccCCCcchhc---------chhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCe
Confidence 111110 011111 1111100000 0012355666777888888889999999999999998766 4
Q ss_pred EEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 219 VKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 219 v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
|.||. +.+|..+. |+.||.++|-+=.
T Consensus 134 v~GV~--t~~G~~~~--a~aVVlTTGTFL~ 159 (621)
T COG0445 134 VVGVV--TADGPEFH--AKAVVLTTGTFLR 159 (621)
T ss_pred EEEEE--eCCCCeee--cCEEEEeeccccc
Confidence 77776 67888654 9999999998743
No 193
>PRK06370 mercuric reductase; Validated
Probab=98.58 E-value=3.1e-07 Score=97.73 Aligned_cols=37 Identities=41% Similarity=0.559 Sum_probs=34.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
|+.+|||+||||||+|+++|+.|+++|.+|+|+|+..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 4567999999999999999999999999999999863
No 194
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.57 E-value=2.9e-07 Score=97.42 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=31.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
+|||+||||||+|+++|..|++.|.+|+|+||.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 589999999999999999999999999999986
No 195
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.55 E-value=4.3e-07 Score=97.20 Aligned_cols=145 Identities=19% Similarity=0.179 Sum_probs=77.2
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
..|+|||||++||++|..|.+.|++|+++||.+.....+.-.. .-.+ +. -.+.+.+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~-----------------~~~~-g~-----~~~y~sl~ 58 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTE-----------------NPED-GR-----SSVYDSLH 58 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHST-----------------TCCC-SE-----GGGSTT-B
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCC-----------------cCCC-Cc-----cccccceE
Confidence 3699999999999999999999999999999874433110000 0000 00 00011000
Q ss_pred hccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCC-eEEEeCe-EEEeeeeCC--eEEEE
Q 040732 147 EIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPN-VRMEEGT-VTSLFEENG--IVKGV 222 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-v~v~~~~-v~~l~~~~~--~v~gV 222 (541)
.+-......|+....+.... -..++.++.+.|...++..+= -.++.++ |+++...++ .....
T Consensus 59 -------------~n~sk~~~~fsdfp~p~~~p-~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W 124 (531)
T PF00743_consen 59 -------------TNTSKEMMAFSDFPFPEDYP-DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKW 124 (531)
T ss_dssp --------------SS-GGGSCCTTS-HCCCCS-SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEE
T ss_pred -------------EeeCchHhcCCCcCCCCCCC-CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceE
Confidence 00000001111111111111 246788899999999987621 2566776 888876532 11123
Q ss_pred EEEc-CCCcEEEEEcCEEEEecCCCCc
Q 040732 223 HYKT-KDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 223 ~v~~-~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
++.+ .+|+..+-..|.||+|+|.++.
T Consensus 125 ~V~~~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 125 EVTTENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp EEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred EEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence 3333 4555545568999999999984
No 196
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.55 E-value=3.7e-07 Score=97.17 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=32.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
+..|||+||||||+|+++|..|++.|.+|+|||+.
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 34699999999999999999999999999999986
No 197
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.54 E-value=2.5e-05 Score=81.84 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=37.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCC
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPD 103 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~ 103 (541)
|++.|||||||+|.+|+.+|..|++.|.+|+++||+.....
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG 41 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence 56789999999999999999999999999999999975543
No 198
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.52 E-value=1.6e-06 Score=86.52 Aligned_cols=62 Identities=23% Similarity=0.293 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCCeEEEeCe-EEEeeee--CCeEEEEEEEcCCCc--EEEEEcCEEEEecCCCCcc
Q 040732 188 FIQRMREKAASLPNVRMEEGT-VTSLFEE--NGIVKGVHYKTKDGQ--EHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 188 l~~~L~~~~~~~~~v~v~~~~-v~~l~~~--~~~v~gV~v~~~~g~--~~~v~a~lvV~AdG~~S~v 249 (541)
........+.+.+|+++..++ |+++..+ +++++||++.+.++. ...+.++.||.|.|+..+-
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp 260 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTP 260 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHH
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCCh
Confidence 334444445566799999998 9999665 788999999988877 4556799999999985443
No 199
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.51 E-value=3.9e-07 Score=85.59 Aligned_cols=33 Identities=42% Similarity=0.639 Sum_probs=31.3
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
+|+|||+||+|+++|+.|+.+|++|+|+||...
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence 699999999999999999999999999999863
No 200
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.51 E-value=1e-06 Score=93.10 Aligned_cols=35 Identities=37% Similarity=0.610 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
++|||+||||||||+++|..|++.|.+|+|+||..
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 46999999999999999999999999999999975
No 201
>PRK14727 putative mercuric reductase; Provisional
Probab=98.50 E-value=1.1e-06 Score=93.77 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=33.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+.+|||+||||||+|+++|..|+++|.+|+|+|+..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 356999999999999999999999999999999874
No 202
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.49 E-value=4.3e-07 Score=96.66 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEec
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIER 97 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr 97 (541)
.|||+||||||+|+++|..|+++|.+|+|||+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~ 32 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK 32 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 38999999999999999999999999999998
No 203
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.48 E-value=1.5e-05 Score=80.96 Aligned_cols=45 Identities=38% Similarity=0.598 Sum_probs=38.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceee
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHV 112 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~ 112 (541)
....||||||||.+||++|+.|.|+|++|+|+|.+. +..||...+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~----r~GGR~~t~ 49 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARD----RVGGRSLTA 49 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccC----CcCceeEEE
Confidence 567899999999999999999999999999999887 445555444
No 204
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.46 E-value=1.1e-06 Score=94.35 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCccccccc
Q 040732 186 GRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLC 254 (541)
Q Consensus 186 ~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~ 254 (541)
..+.+.|.+.+++. |++++.++ |+++..+++++.+|+ +.+|++ +.||.||.|.|.+..+++.+.
T Consensus 229 ~~l~~~L~~~~~~~-G~~i~~~~~V~~I~~~~~~~~gv~--~~~g~~--~~ad~vV~a~~~~~~~~~Ll~ 293 (493)
T TIGR02730 229 GQIAESLVKGLEKH-GGQIRYRARVTKIILENGKAVGVK--LADGEK--IYAKRIVSNATRWDTFGKLLK 293 (493)
T ss_pred HHHHHHHHHHHHHC-CCEEEeCCeeeEEEecCCcEEEEE--eCCCCE--EEcCEEEECCChHHHHHHhCC
Confidence 35778888888887 88998887 999887777777666 456765 459999999999888877664
No 205
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.44 E-value=2.9e-06 Score=66.77 Aligned_cols=33 Identities=39% Similarity=0.642 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
.|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 489999999999999999999999999999873
No 206
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.43 E-value=1.8e-06 Score=91.88 Aligned_cols=32 Identities=34% Similarity=0.513 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
||+|||||++|+.+|..++++|.+|+|+||..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999999999999874
No 207
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.43 E-value=4.2e-06 Score=80.79 Aligned_cols=38 Identities=42% Similarity=0.622 Sum_probs=34.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
+..+||||||||.|||.+|..|+.+|.+|+|+|+..+.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ 40 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence 45789999999999999999999999999999998643
No 208
>PLN02546 glutathione reductase
Probab=98.42 E-value=2.2e-06 Score=92.41 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=32.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEec
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIER 97 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr 97 (541)
..+|||+||||||+|..+|..++++|.+|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3469999999999999999999999999999996
No 209
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.40 E-value=5.8e-06 Score=85.58 Aligned_cols=70 Identities=27% Similarity=0.284 Sum_probs=48.2
Q ss_pred cEEEECCChHHHHHHHHHhhCC--CcEEEEecCCCCCCC-----cCCcceeeeeccccccccccccccC-chhhHHHHHC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDG--RRVHVIERDMTQPDR-----IDGRRVHVIERDLMEPNRIVGELLQ-PGGYLKLVEL 139 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G--~~V~viEr~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~l~-~~~~~~l~~l 139 (541)
.|+|||||++||++|+.|++++ +.|+|+|+++..... .+|-.+.. ..-..... +..++.++++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~---------G~~~f~~~~~~~l~li~eL 72 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFER---------GPHHFLARKEEILDLIKEL 72 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEee---------chhheecchHHHHHHHHHh
Confidence 5899999999999999999999 999999998643321 11111110 00011122 5667888999
Q ss_pred CchhhHh
Q 040732 140 GLDDCVE 146 (541)
Q Consensus 140 gl~~~~~ 146 (541)
|+.+.+.
T Consensus 73 Gled~l~ 79 (444)
T COG1232 73 GLEDKLL 79 (444)
T ss_pred CcHHhhc
Confidence 9998876
No 210
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.39 E-value=1.9e-06 Score=91.58 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+|+||||||+|+++|..|++.|.+|+||||..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999874
No 211
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.39 E-value=7.6e-07 Score=83.28 Aligned_cols=32 Identities=38% Similarity=0.653 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
||+|||||+||+++|..|++.|.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998775
No 212
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.38 E-value=3.4e-05 Score=78.34 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=49.7
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 181 RSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 181 ~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
..++..++...|.+.+.+. |++++.++ |+++..+++.+.+|. +.+| . ++||.||.|+|.++.
T Consensus 132 g~v~p~~l~~~l~~~~~~~-g~~~~~~~~v~~i~~~~~~~~~v~--~~~g-~--~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKL-GVEIIEHTEVQHIEIRGEKVTAIV--TPSG-D--VQADQVVLAAGAWAG 194 (337)
T ss_pred ceEChHHHHHHHHHHHHHc-CCEEEccceEEEEEeeCCEEEEEE--cCCC-E--EECCEEEEcCChhhh
Confidence 4567788999999999887 88999886 999988777665554 4555 3 569999999999985
No 213
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.37 E-value=4.6e-07 Score=68.71 Aligned_cols=31 Identities=39% Similarity=0.602 Sum_probs=28.2
Q ss_pred EECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 71 VVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 71 IVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 8999999999999999999999999999743
No 214
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.37 E-value=7.9e-06 Score=83.99 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=47.3
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEeC-eEEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCC-Cc
Q 040732 183 FHNGRFIQRMREKAASLPNVRMEEG-TVTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGF-SN 248 (541)
Q Consensus 183 ~~r~~l~~~L~~~~~~~~~v~v~~~-~v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~-S~ 248 (541)
+.-.++.+.|.+.+++. |+++..+ +|+++..+++++.+|.. .++...+++||.+|.|+|.| |.
T Consensus 260 v~G~RL~~aL~~~~~~~-Gg~il~g~~V~~i~~~~~~v~~V~t--~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQL-GGVMLPGDRVLRAEFEGNRVTRIHT--RNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred CcHHHHHHHHHHHHHHC-CCEEEECcEEEEEEeeCCeEEEEEe--cCCccceEECCEEEEccCCCcCH
Confidence 33346888899999988 7788888 59998888887766553 44423346799999999999 74
No 215
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.37 E-value=1.7e-06 Score=92.00 Aligned_cols=34 Identities=41% Similarity=0.578 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
..||||||||||+|+++|..|++.|.+|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4599999999999999999999999999999984
No 216
>PRK02106 choline dehydrogenase; Validated
Probab=98.36 E-value=1e-05 Score=88.21 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=45.3
Q ss_pred HHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCccc
Q 040732 193 REKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLR 250 (541)
Q Consensus 193 ~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR 250 (541)
...+.+.+|+++..++ |++++.++++++||++...++....+.++.||.|.|+...-|
T Consensus 207 l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~ 265 (560)
T PRK02106 207 LDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQ 265 (560)
T ss_pred hccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHH
Confidence 3334445799999998 999998888899999877666555567999999999876544
No 217
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.36 E-value=3.2e-06 Score=90.19 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
+||||||||||+|+.+|+.+++.|.+|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999975
No 218
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.36 E-value=1.1e-05 Score=93.22 Aligned_cols=38 Identities=39% Similarity=0.476 Sum_probs=34.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
...+||+||||||||+++|+.|++.|++|+|+|+.+..
T Consensus 161 ~~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~ 198 (985)
T TIGR01372 161 NAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA 198 (985)
T ss_pred cccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 35689999999999999999999999999999998643
No 219
>PTZ00058 glutathione reductase; Provisional
Probab=98.35 E-value=7.5e-07 Score=96.05 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=33.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
..+||||||||||+|.++|..+++.|.+|+||||.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 36799999999999999999999999999999986
No 220
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.34 E-value=6.6e-06 Score=87.82 Aligned_cols=58 Identities=10% Similarity=0.132 Sum_probs=46.3
Q ss_pred cCCCeEEEeCe-EEEeeeeC---CeEEEEEEEcC-CCcEEEEEcCEEEEecCCCCcccccccC
Q 040732 198 SLPNVRMEEGT-VTSLFEEN---GIVKGVHYKTK-DGQEHKSYAPLTIVCDGGFSNLRRSLCN 255 (541)
Q Consensus 198 ~~~~v~v~~~~-v~~l~~~~---~~v~gV~v~~~-~g~~~~v~a~lvV~AdG~~S~vR~~l~~ 255 (541)
+.++++++.+. |+++..++ +++.+|.+.+. +|+..+++|+.||.|.|+--+.|-++..
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S 287 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNS 287 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhC
Confidence 46789999987 88987653 46889988875 6888889999999999987777666643
No 221
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.33 E-value=2.7e-06 Score=90.60 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=31.6
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
|||+||||||+|+++|..|+++|.+|+|+||..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 799999999999999999999999999999864
No 222
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.33 E-value=3.5e-06 Score=75.54 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=26.9
Q ss_pred EEECCChHHHHHHHHHhhC-----CCcEEEEecCC
Q 040732 70 IVVGAGVAGAALAHTLGTD-----GRRVHVIERDM 99 (541)
Q Consensus 70 vIVGaG~aGl~~A~~La~~-----G~~V~viEr~~ 99 (541)
+|||||++|++++..|.++ ..+|+|+|+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 5999999999999999987 46899999965
No 223
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.31 E-value=5.6e-06 Score=88.74 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=32.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
...|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 3 ~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 34699999999999999999999999999999974
No 224
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.30 E-value=4.1e-06 Score=89.19 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC-CCcEEEEecC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTD-GRRVHVIERD 98 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~-G~~V~viEr~ 98 (541)
.+||||||||||+|..+|..+++. |.+|+|||+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 469999999999999999999996 9999999985
No 225
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.29 E-value=3.4e-06 Score=96.20 Aligned_cols=36 Identities=33% Similarity=0.405 Sum_probs=33.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
....+|+|||||||||++|..|++.|++|+|+|+.+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 346899999999999999999999999999999985
No 226
>PLN02785 Protein HOTHEAD
Probab=98.28 E-value=2.3e-05 Score=85.19 Aligned_cols=37 Identities=41% Similarity=0.491 Sum_probs=33.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
.+..||+||||||.||+.+|..|++ +.+|+|||+...
T Consensus 52 ~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 52 GDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 3557999999999999999999998 689999999864
No 227
>PRK09897 hypothetical protein; Provisional
Probab=98.27 E-value=1.6e-05 Score=84.96 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCC--CcEEEEecCCCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDG--RRVHVIERDMTQP 102 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G--~~V~viEr~~~~~ 102 (541)
.+|+|||||++|+++|..|.+++ .+|+|+|+.....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 37999999999999999998764 5899999976443
No 228
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.24 E-value=3.9e-06 Score=87.64 Aligned_cols=36 Identities=33% Similarity=0.453 Sum_probs=34.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+.+||+|||||||+|..+|..+++.|.+|.++|+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 568999999999999999999999999999999985
No 229
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.22 E-value=2.5e-05 Score=84.57 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 189 IQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 189 ~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
...+...+.+.+|+++..++ |+++..++++++||++...+++.....++.||.|.|+...
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~S 256 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINS 256 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCC
Confidence 33344445556799999998 9999988888999998764433333579999999999443
No 230
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.19 E-value=2.6e-05 Score=81.03 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCC
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGF 246 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~ 246 (541)
++.+.|.+.+++. ++++..++ |+++..+++.+..+. ..+|+...++||.||.|+|.+
T Consensus 260 rL~~aL~~~l~~~-Gv~I~~g~~V~~v~~~~~~V~~v~--~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERL-GGRIMPGDEVLGAEFEGGRVTAVW--TRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCEEEEEE--eeCCceEEEECCEEEEeCCCc
Confidence 4677788888776 78888886 999887777655443 345666667899999999976
No 231
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=4.5e-06 Score=84.15 Aligned_cols=152 Identities=24% Similarity=0.286 Sum_probs=87.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccc-cccccccCchhhHHHHHCCch
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPN-RIVGELLQPGGYLKLVELGLD 142 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~l~~~~~~~l~~lgl~ 142 (541)
+..|||||||||=||+-+|.+.+|.|.+.+++-.+...-. +.+.++. .+.|-..--+.+++|. |+-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig-----------~msCNPsfGGigKg~LmrEVDALd--Gl~ 92 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIG-----------EMSCNPSFGGIGKGHLMREVDALD--GLC 92 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccccccc-----------ccccCcccCCcccceeeeeehhhc--chH
Confidence 5789999999999999999999999999999987642111 0000000 1111111111111111 111
Q ss_pred hhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCcc--ceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCe--
Q 040732 143 DCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVA--GRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGI-- 218 (541)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~-- 218 (541)
..+.. ..++.. ..-....++... -..++|.-+.+.+.+.+...++..+.++.|.+++-.++.
T Consensus 93 ~rvcD-----~s~vq~---------k~LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~ 158 (679)
T KOG2311|consen 93 SRVCD-----QSGVQY---------KVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDG 158 (679)
T ss_pred hhhhh-----hhhhhH---------HHhhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCC
Confidence 11100 001100 000000001111 124677777788888888889999999999998754322
Q ss_pred ---EEEEEEEcCCCcEEEEEcCEEEEecCCC
Q 040732 219 ---VKGVHYKTKDGQEHKSYAPLTIVCDGGF 246 (541)
Q Consensus 219 ---v~gV~v~~~~g~~~~v~a~lvV~AdG~~ 246 (541)
+.||. ..||+. ++|+.||..+|-+
T Consensus 159 ~~~~~gV~--l~dgt~--v~a~~VilTTGTF 185 (679)
T KOG2311|consen 159 HCVVSGVV--LVDGTV--VYAESVILTTGTF 185 (679)
T ss_pred ceEEEEEE--EecCcE--eccceEEEeeccc
Confidence 55665 457875 5699999999976
No 232
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=3.6e-06 Score=81.60 Aligned_cols=117 Identities=22% Similarity=0.300 Sum_probs=76.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
+..|||+||||||||.++|+..+|.|++.-|+--+ ..|. .|+.+++..
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer------------------------fGGQ--------vldT~~IEN 256 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER------------------------FGGQ--------VLDTMGIEN 256 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh------------------------hCCe--------eccccchhh
Confidence 56799999999999999999999999987665321 1111 133344332
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeee--CCeEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEE--NGIVK 220 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~--~~~v~ 220 (541)
.+. .|. ..-.+|...|.++++++ .+++.... .+++... .+.
T Consensus 257 fIs----------------------v~~-----------teGpkl~~ale~Hv~~Y-~vDimn~qra~~l~~a~~~~~-- 300 (520)
T COG3634 257 FIS----------------------VPE-----------TEGPKLAAALEAHVKQY-DVDVMNLQRASKLEPAAVEGG-- 300 (520)
T ss_pred eec----------------------ccc-----------ccchHHHHHHHHHHhhc-CchhhhhhhhhcceecCCCCc--
Confidence 111 000 11135888999999988 77776654 6676653 222
Q ss_pred EEEEEcCCCcEEEEEcCEEEEecCCCCccccc
Q 040732 221 GVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRS 252 (541)
Q Consensus 221 gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~ 252 (541)
-.+++.++|.... ++.+|.++|++ .|+.
T Consensus 301 l~ev~l~nGavLk--aktvIlstGAr--WRn~ 328 (520)
T COG3634 301 LIEVELANGAVLK--ARTVILATGAR--WRNM 328 (520)
T ss_pred cEEEEecCCceec--cceEEEecCcc--hhcC
Confidence 2456678888654 99999999964 4443
No 233
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.13 E-value=7.5e-05 Score=80.62 Aligned_cols=73 Identities=25% Similarity=0.260 Sum_probs=58.3
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCc-ccccccC
Q 040732 182 SFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSN-LRRSLCN 255 (541)
Q Consensus 182 ~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~-vR~~l~~ 255 (541)
.++..++...+.+.+.+. |+++..++ |+++..+++.+.+|++.+ .+|+..+++|+.||+|+|.++. +.+..+.
T Consensus 124 ~vdp~~l~~al~~~A~~~-Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEH-GARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL 199 (516)
T ss_pred EECHHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC
Confidence 577788999999999888 78888876 999998888888888764 4566667889999999999985 4444554
No 234
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.13 E-value=2.5e-05 Score=85.59 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=32.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
.+||||||||||+|.++|..+++.|.+|+|||++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4799999999999999999999999999999975
No 235
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.13 E-value=1.5e-05 Score=84.48 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHhhCC--CcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDG--RRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G--~~V~viEr~~ 99 (541)
+|||||||++|+++|..|++.| .+|+|||+.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 6999999999999999999875 5899999986
No 236
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.09 E-value=2.1e-05 Score=83.12 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHhhC--CCcEEEEecCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTD--GRRVHVIERDMT 100 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~--G~~V~viEr~~~ 100 (541)
+|||||||++|+.+|..|++. +.+|+|+|+++.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 799999999999999999886 579999999863
No 237
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.08 E-value=7.2e-06 Score=80.69 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=34.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
.+|||+|||+||.|-.+|+..++.|.+..++|++...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L 74 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence 6899999999999999999999999999999998644
No 238
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.08 E-value=2.4e-05 Score=88.44 Aligned_cols=36 Identities=42% Similarity=0.495 Sum_probs=33.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
....+|+||||||||+++|..|++.|++|+|+|+.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 456799999999999999999999999999999876
No 239
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.08 E-value=0.00026 Score=73.37 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=47.3
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 181 RSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 181 ~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
..++..++...|.+.+.+ ++++++++ |+++..+++. +.+++.+|+. +.||.||.|+|.++.
T Consensus 130 g~idp~~~~~~l~~~~~~--G~~i~~~~~V~~i~~~~~~---~~v~t~~g~~--~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI--RLTLHFNTEITSLERDGEG---WQLLDANGEV--IAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC--CcEEEeCCEEEEEEEcCCe---EEEEeCCCCE--EEcCEEEEcCCcccc
Confidence 346778899999988876 78888886 9998876653 4455667764 459999999999984
No 240
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.07 E-value=7e-05 Score=79.56 Aligned_cols=38 Identities=37% Similarity=0.525 Sum_probs=34.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
....+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 45679999999999999999999999999999998643
No 241
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.07 E-value=4.8e-05 Score=81.00 Aligned_cols=102 Identities=21% Similarity=0.271 Sum_probs=73.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
..+|+|||||++|+-+|..|++.|.+|+++|+.+.... . +
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------~-----~----------------- 209 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP------------------G-----E----------------- 209 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC------------------C-----C-----------------
Confidence 35899999999999999999999999999998752110 0 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
..++.+.+.+.+++. +++++.++ |+++..+++. +.+
T Consensus 210 ---------------------------------------~~~~~~~~~~~l~~~-gi~i~~~~~v~~i~~~~~~---v~v 246 (461)
T TIGR01350 210 ---------------------------------------DAEVSKVVAKALKKK-GVKILTNTKVTAVEKNDDQ---VVY 246 (461)
T ss_pred ---------------------------------------CHHHHHHHHHHHHHc-CCEEEeCCEEEEEEEeCCE---EEE
Confidence 012334455556665 89999986 8888766554 334
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCccc
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNLR 250 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~vR 250 (541)
...+|+..++.+|.||.|.|......
T Consensus 247 ~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 247 ENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEeCCcEEEEEeCEEEEecCCcccCC
Confidence 44566544577999999999887654
No 242
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.05 E-value=2.7e-06 Score=76.89 Aligned_cols=142 Identities=25% Similarity=0.343 Sum_probs=80.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC--CCcEEEEecCCCCCCCc-CCcceeeeeccccccccccccccCchhhHHHHHCCc
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTD--GRRVHVIERDMTQPDRI-DGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGL 141 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~--G~~V~viEr~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl 141 (541)
...||||||||-+||++|+..++. ..+|.|||..-.+..+. -|..+ .....+....-.+|+++|+
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQL------------FSAMvvRKPAhLFL~Eigv 142 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQL------------FSAMVVRKPAHLFLQEIGV 142 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchh------------hhhhhhcChHHHHHHHhCC
Confidence 356999999999999999999854 68999999986443311 00000 0011122333344555554
Q ss_pred hhhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecc-hHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCC--
Q 040732 142 DDCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHN-GRFIQRMREKAASLPNVRMEEGT-VTSLFEENG-- 217 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r-~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~-- 217 (541)
.-. +.|. ...+.+ .-|......++...||+.++..+ |++++...+
T Consensus 143 pYe---------------degd----------------YVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~ 191 (328)
T KOG2960|consen 143 PYE---------------DEGD----------------YVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEK 191 (328)
T ss_pred Ccc---------------cCCC----------------EEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcC
Confidence 310 0011 011222 23555666667778999999987 888765422
Q ss_pred ---eEEEEE----EE-cCCCc-----EEEEEcCEEEEecCCCCcc
Q 040732 218 ---IVKGVH----YK-TKDGQ-----EHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 218 ---~v~gV~----v~-~~~g~-----~~~v~a~lvV~AdG~~S~v 249 (541)
++.||. +. ...|. .-.+++.+||-++|...++
T Consensus 192 g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tGHDGPF 236 (328)
T KOG2960|consen 192 GEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTGHDGPF 236 (328)
T ss_pred CceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccCCCCCc
Confidence 233332 11 12222 1235588888888776654
No 243
>PRK07846 mycothione reductase; Reviewed
Probab=98.05 E-value=2.2e-05 Score=83.12 Aligned_cols=32 Identities=22% Similarity=0.515 Sum_probs=27.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+||||||||||+|.++|.. ..|.+|+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 4899999999999988866 4699999999863
No 244
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.03 E-value=2.5e-05 Score=81.37 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC--cEEEEecCCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGR--RVHVIERDMT 100 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~--~V~viEr~~~ 100 (541)
..+|||||||+||+.+|..|++.|. +|+|+|+.+.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~ 39 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH 39 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 4589999999999999999999886 7999998764
No 245
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.98 E-value=2.9e-05 Score=79.91 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHhhC---CCcEEEEecCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTD---GRRVHVIERDMT 100 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~---G~~V~viEr~~~ 100 (541)
+|||||||+||+.+|..|.++ +.+|+|||++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 489999999999999999743 689999998763
No 246
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.98 E-value=0.00018 Score=76.60 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=73.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.-+|+|||||..|+-+|..|++.|.+|+|+|+.+.... .
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~---------------------------~-------------- 210 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP---------------------------N-------------- 210 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC---------------------------c--------------
Confidence 35899999999999999999999999999998752111 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
. ..++.+.+.+.+++. +++++.++ |+++..+++.+ .+.+
T Consensus 211 -------------------------------------~-d~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~~-~v~~ 250 (466)
T PRK07818 211 -------------------------------------E-DAEVSKEIAKQYKKL-GVKILTGTKVESIDDNGSKV-TVTV 250 (466)
T ss_pred -------------------------------------c-CHHHHHHHHHHHHHC-CCEEEECCEEEEEEEeCCeE-EEEE
Confidence 0 011334455555555 89999987 88887654432 2444
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCccc
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNLR 250 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~vR 250 (541)
...+|+..++.+|.||.|.|......
T Consensus 251 ~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 251 SKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EecCCCeEEEEeCEEEECcCcccCCC
Confidence 33467655678999999999876543
No 247
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.98 E-value=8.2e-06 Score=86.42 Aligned_cols=39 Identities=36% Similarity=0.390 Sum_probs=35.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
..+..+|||||||+||++||..|.+.|++|+|+|.+...
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 356789999999999999999999999999999998743
No 248
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.97 E-value=4.8e-05 Score=79.95 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.+.+|||||||.||+.+|..|.+.+.+|+|||+++
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCC
Confidence 45689999999999999999988789999999876
No 249
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.97 E-value=8e-05 Score=77.07 Aligned_cols=99 Identities=19% Similarity=0.302 Sum_probs=70.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
..+|+|||||+.|+-+|..|++.|.+|+++|+.+.... + .+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~------------------~----~~----------------- 181 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA------------------S----LM----------------- 181 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc------------------h----hC-----------------
Confidence 35799999999999999999999999999998752111 0 00
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
...+...+.+.+++. +++++.++ ++++..+++. +.+
T Consensus 182 ---------------------------------------~~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~---~~v 218 (377)
T PRK04965 182 ---------------------------------------PPEVSSRLQHRLTEM-GVHLLLKSQLQGLEKTDSG---IRA 218 (377)
T ss_pred ---------------------------------------CHHHHHHHHHHHHhC-CCEEEECCeEEEEEccCCE---EEE
Confidence 001334445555555 89998876 8888765442 344
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCc
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
.+.+|++ +.+|+||.|+|....
T Consensus 219 ~~~~g~~--i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 219 TLDSGRS--IEVDAVIAAAGLRPN 240 (377)
T ss_pred EEcCCcE--EECCEEEECcCCCcc
Confidence 4567765 559999999998664
No 250
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.94 E-value=0.00024 Score=67.98 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=53.9
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccccCCCccc
Q 040732 181 RSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSLCNPKVDI 260 (541)
Q Consensus 181 ~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l~~~~~~~ 260 (541)
+...-.++...|.+.+.+. |+++...+|+++.+-. + -.+|+||+|+|-++. +..+.+.
T Consensus 146 ~~sE~~~ylpyl~k~l~e~-Gvef~~r~v~~l~E~~-----------~-----~~~DVivNCtGL~a~--~L~gDd~--- 203 (342)
T KOG3923|consen 146 YLSEGPKYLPYLKKRLTEN-GVEFVQRRVESLEEVA-----------R-----PEYDVIVNCTGLGAG--KLAGDDD--- 203 (342)
T ss_pred eeccchhhhHHHHHHHHhc-CcEEEEeeeccHHHhc-----------c-----CCCcEEEECCccccc--cccCCcc---
Confidence 3445567889999999887 7888777777664311 1 128999999999873 3333332
Q ss_pred ccceEEEEEeecCCCCCCeeEEEEcCCCcEEEEEccC
Q 040732 261 PSCFVGMALENCQLPVPNHGHVVLTDPSPILFYPISS 297 (541)
Q Consensus 261 ~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~ 297 (541)
-+...|.++ ..+ .|...+.+..+...-+++|..+
T Consensus 204 ~yPiRGqVl-~V~--ApWvkhf~~~D~~~ty~iP~~~ 237 (342)
T KOG3923|consen 204 LYPIRGQVL-KVD--APWVKHFIYRDFSRTYIIPGTE 237 (342)
T ss_pred eeeccceEE-Eee--CCceeEEEEecCCccEEecCCc
Confidence 222344443 222 3444555665554334444333
No 251
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.94 E-value=4.6e-05 Score=77.33 Aligned_cols=153 Identities=21% Similarity=0.221 Sum_probs=71.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCC-CcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDG-RRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G-~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
.+|+|+||.||++|++|++|...+ .+++.+||.+...-. ..- -.-|.-||-.- |+.|--.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh--~gm------------ll~~~~~q~~f---l~Dlvt~-- 62 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWH--PGM------------LLPGARMQVSF---LKDLVTL-- 62 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TT--GGG--------------SS-B-SS-T---TSSSSTT--
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcC--Ccc------------CCCCCcccccc---ccccCcC--
Confidence 479999999999999999999876 899999998744221 000 00000011100 1100000
Q ss_pred HhhccceeeeeeEEE----ECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCC--
Q 040732 145 VEEIDAHPVVGYALF----KDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENG-- 217 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~-- 217 (541)
..|...+.+. ..|+... |- ........|.++.+.|+-.+.+.++ .+.++. |+++...++
T Consensus 63 -----~~P~s~~sflnYL~~~~rl~~--f~------~~~~~~p~R~ef~dYl~Wva~~~~~-~v~~~~~V~~I~~~~~~~ 128 (341)
T PF13434_consen 63 -----RDPTSPFSFLNYLHEHGRLYE--FY------NRGYFFPSRREFNDYLRWVAEQLDN-QVRYGSEVTSIEPDDDGD 128 (341)
T ss_dssp -----T-TTSTTSHHHHHHHTT-HHH--HH------HH--SS-BHHHHHHHHHHHHCCGTT-TEEESEEEEEEEEEEETT
T ss_pred -----cCCCCcccHHHHHHHcCChhh--hh------hcCCCCCCHHHHHHHHHHHHHhCCC-ceEECCEEEEEEEecCCC
Confidence 0000000000 0011000 00 0001235677888888887777754 255565 988876432
Q ss_pred -eEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccc
Q 040732 218 -IVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRR 251 (541)
Q Consensus 218 -~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~ 251 (541)
....|+..+.+|+..++.|+-||.++|..-.+..
T Consensus 129 ~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP~ 163 (341)
T PF13434_consen 129 EDLFRVTTRDSDGDGETYRARNVVLATGGQPRIPE 163 (341)
T ss_dssp EEEEEEEEEETTS-EEEEEESEEEE----EE---G
T ss_pred ccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCCc
Confidence 2344555556777777889999999994433433
No 252
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.94 E-value=3e-05 Score=87.41 Aligned_cols=36 Identities=36% Similarity=0.482 Sum_probs=33.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
....+|+||||||||+++|..|++.|++|+|+|+.+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 456799999999999999999999999999999864
No 253
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=9.6e-05 Score=67.66 Aligned_cols=120 Identities=19% Similarity=0.271 Sum_probs=77.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCch
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLD 142 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~ 142 (541)
+.+...|+|||.|||+-++|+.++|.-++.+++|-..... +.|+|+
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~-------------------------i~pGGQ--------- 50 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG-------------------------IAPGGQ--------- 50 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC-------------------------cCCCce---------
Confidence 3455689999999999999999999999999999654111 112211
Q ss_pred hhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEE
Q 040732 143 DCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGV 222 (541)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV 222 (541)
.......+.++.-+.| +.-.+|.+.+++...+. |.+++..+|.++.....-.
T Consensus 51 ----------------------LtTTT~veNfPGFPdg--i~G~~l~d~mrkqs~r~-Gt~i~tEtVskv~~sskpF--- 102 (322)
T KOG0404|consen 51 ----------------------LTTTTDVENFPGFPDG--ITGPELMDKMRKQSERF-GTEIITETVSKVDLSSKPF--- 102 (322)
T ss_pred ----------------------eeeeeccccCCCCCcc--cccHHHHHHHHHHHHhh-cceeeeeehhhccccCCCe---
Confidence 0000011111111111 33356889999999888 8888888888887655432
Q ss_pred EEEcCCCcEEEEEcCEEEEecCCCC
Q 040732 223 HYKTKDGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 223 ~v~~~~g~~~~v~a~lvV~AdG~~S 247 (541)
++.+ |.++ +.||.||.|+|+..
T Consensus 103 ~l~t-d~~~--v~~~avI~atGAsA 124 (322)
T KOG0404|consen 103 KLWT-DARP--VTADAVILATGASA 124 (322)
T ss_pred EEEe-cCCc--eeeeeEEEecccce
Confidence 2323 3333 45999999999743
No 254
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.93 E-value=0.00013 Score=77.73 Aligned_cols=100 Identities=18% Similarity=0.210 Sum_probs=72.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
...|+|||||+.|+-+|..|++.|.+|+++|+.+.... .
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------~----------------------- 213 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS------------------F----------------------- 213 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------c-----------------------
Confidence 45899999999999999999999999999998752111 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
+ ..++.+.|.+.+++. +++++.++ |+++..+++. +.+
T Consensus 214 -------------------------------------~-d~~~~~~l~~~l~~~-gI~v~~~~~v~~i~~~~~~---~~v 251 (461)
T PRK05249 214 -------------------------------------L-DDEISDALSYHLRDS-GVTIRHNEEVEKVEGGDDG---VIV 251 (461)
T ss_pred -------------------------------------C-CHHHHHHHHHHHHHc-CCEEEECCEEEEEEEeCCe---EEE
Confidence 0 012344455555555 89999886 8888765553 444
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCccc
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNLR 250 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~vR 250 (541)
..++|++ +.+|.||.|+|......
T Consensus 252 ~~~~g~~--i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 252 HLKSGKK--IKADCLLYANGRTGNTD 275 (461)
T ss_pred EECCCCE--EEeCEEEEeecCCcccc
Confidence 4566764 56999999999887654
No 255
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.92 E-value=0.00016 Score=78.89 Aligned_cols=38 Identities=32% Similarity=0.394 Sum_probs=34.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
....+|+||||||+|+++|..|++.|.+|+|+|+.+..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45578999999999999999999999999999998643
No 256
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.89 E-value=0.00018 Score=75.23 Aligned_cols=103 Identities=21% Similarity=0.267 Sum_probs=75.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
.+-.++|||||+.|+=.|..+++.|.+|+|+|+.+..-. +
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp------------------------------------~---- 211 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP------------------------------------G---- 211 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC------------------------------------c----
Confidence 455799999999999999999999999999999873211 0
Q ss_pred HhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEE
Q 040732 145 VEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVH 223 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~ 223 (541)
+ ..++.+.+.+.+++ .++.++.++ ++.+...++. +.
T Consensus 212 --------------------------------------~-D~ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~~~~---v~ 248 (454)
T COG1249 212 --------------------------------------E-DPEISKELTKQLEK-GGVKILLNTKVTAVEKKDDG---VL 248 (454)
T ss_pred --------------------------------------C-CHHHHHHHHHHHHh-CCeEEEccceEEEEEecCCe---EE
Confidence 0 01356666777776 589999998 6666665553 44
Q ss_pred EEcCCCcEEEEEcCEEEEecCCCCccc
Q 040732 224 YKTKDGQEHKSYAPLTIVCDGGFSNLR 250 (541)
Q Consensus 224 v~~~~g~~~~v~a~lvV~AdG~~S~vR 250 (541)
+..++|+..++.+|.|+.|.|..-++-
T Consensus 249 v~~~~g~~~~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 249 VTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred EEEecCCCCEEEeeEEEEccCCccCCC
Confidence 445555533466999999999765543
No 257
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.88 E-value=0.00019 Score=76.29 Aligned_cols=100 Identities=20% Similarity=0.307 Sum_probs=70.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
+-+|+|||||++|+-+|..|++.|.+|+|+|+.+.... +
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~------------------------------------~----- 208 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP------------------------------------G----- 208 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc------------------------------------c-----
Confidence 35899999999999999999999999999998752100 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
. ..++.+.+.+.+++. +++++.++ |+++..++.. +.+
T Consensus 209 -------------------------------------~-d~e~~~~l~~~L~~~-GI~i~~~~~V~~i~~~~~~---v~~ 246 (458)
T PRK06912 209 -------------------------------------E-DEDIAHILREKLEND-GVKIFTGAALKGLNSYKKQ---ALF 246 (458)
T ss_pred -------------------------------------c-cHHHHHHHHHHHHHC-CCEEEECCEEEEEEEcCCE---EEE
Confidence 0 012344555556655 89999987 8887655442 334
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.. +|+..++.+|.||.|+|....+
T Consensus 247 ~~-~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 247 EY-EGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred EE-CCceEEEEeCEEEEecCCccCC
Confidence 33 4544457799999999987765
No 258
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.87 E-value=0.00027 Score=75.21 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=71.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
..+|+|||||++|+-+|..|++.|.+|+++|+.+.... . +
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------~-----~----------------- 211 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP------------------G-----E----------------- 211 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC------------------c-----C-----------------
Confidence 35799999999999999999999999999998752111 0 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
+ .++.+.+.+.+++. +++++.++ |+++..+++. +.+
T Consensus 212 ----------------~-----------------------~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~---v~v 248 (462)
T PRK06416 212 ----------------D-----------------------KEISKLAERALKKR-GIKIKTGAKAKKVEQTDDG---VTV 248 (462)
T ss_pred ----------------C-----------------------HHHHHHHHHHHHHc-CCEEEeCCEEEEEEEeCCE---EEE
Confidence 0 11334445555555 89999986 8888766553 334
Q ss_pred EcCC-CcEEEEEcCEEEEecCCCCcc
Q 040732 225 KTKD-GQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 225 ~~~~-g~~~~v~a~lvV~AdG~~S~v 249 (541)
..++ |+..++.+|.||.|.|.....
T Consensus 249 ~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 249 TLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred EEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 3333 443457799999999987654
No 259
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.86 E-value=0.00019 Score=76.61 Aligned_cols=102 Identities=25% Similarity=0.263 Sum_probs=71.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.... .
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~---------------------------~-------------- 218 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP---------------------------T-------------- 218 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC---------------------------c--------------
Confidence 35899999999999999999999999999998752111 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeee-eCCeEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFE-ENGIVKGVH 223 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~-~~~~v~gV~ 223 (541)
. ...+.+.+.+.+++. +++++.++ |+++.. .++.+..
T Consensus 219 -------------------------------------~-~~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~~~~~~~~~-- 257 (472)
T PRK05976 219 -------------------------------------E-DAELSKEVARLLKKL-GVRVVTGAKVLGLTLKKDGGVLI-- 257 (472)
T ss_pred -------------------------------------C-CHHHHHHHHHHHHhc-CCEEEeCcEEEEEEEecCCCEEE--
Confidence 0 012334445555555 89999987 888764 1333322
Q ss_pred EEcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 224 YKTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 224 v~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
+...+|+..++.+|.||.|.|.....
T Consensus 258 ~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 258 VAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred EEEeCCceEEEEeCEEEEeeCCccCC
Confidence 22346665567899999999987654
No 260
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.86 E-value=0.00024 Score=75.90 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=73.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.-.|+|||||..|+-+|..|++.|.+|+|+|+.+.... .
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------~----------------------- 221 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA------------------A----------------------- 221 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC------------------c-----------------------
Confidence 35899999999999999999999999999998752111 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
.+ .++.+.+.+.+++. +++++.++ |+++..+++.+ .+.+
T Consensus 222 -------------------------------------~d-~~~~~~~~~~l~~~-gi~i~~~~~v~~i~~~~~~v-~v~~ 261 (475)
T PRK06327 222 -------------------------------------AD-EQVAKEAAKAFTKQ-GLDIHLGVKIGEIKTGGKGV-SVAY 261 (475)
T ss_pred -------------------------------------CC-HHHHHHHHHHHHHc-CcEEEeCcEEEEEEEcCCEE-EEEE
Confidence 00 12334444555555 89999986 88887665533 2444
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+.+|++.++.+|.||.|.|.....
T Consensus 262 ~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 262 TDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred EeCCCceeEEEcCEEEEccCCccCC
Confidence 4444655567899999999987664
No 261
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.82 E-value=0.00018 Score=74.88 Aligned_cols=97 Identities=23% Similarity=0.241 Sum_probs=68.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+.... +. +
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------~~----~------------------ 184 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG------------------RN----A------------------ 184 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh------------------hh----c------------------
Confidence 5799999999999999999999999999998752111 00 0
Q ss_pred hccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE
Q 040732 147 EIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYK 225 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~ 225 (541)
...+...+.+.+++. +++++.++ ++++.. ++. +.+.
T Consensus 185 --------------------------------------~~~~~~~l~~~l~~~-GV~i~~~~~V~~i~~-~~~---~~v~ 221 (396)
T PRK09754 185 --------------------------------------PPPVQRYLLQRHQQA-GVRILLNNAIEHVVD-GEK---VELT 221 (396)
T ss_pred --------------------------------------CHHHHHHHHHHHHHC-CCEEEeCCeeEEEEc-CCE---EEEE
Confidence 001334445555555 89999886 777765 332 3445
Q ss_pred cCCCcEEEEEcCEEEEecCCCCc
Q 040732 226 TKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 226 ~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
..+|++ +.+|+||.|.|...+
T Consensus 222 l~~g~~--i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 222 LQSGET--LQADVVIYGIGISAN 242 (396)
T ss_pred ECCCCE--EECCEEEECCCCChh
Confidence 667775 559999999998765
No 262
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.80 E-value=0.0005 Score=71.87 Aligned_cols=45 Identities=27% Similarity=0.209 Sum_probs=32.5
Q ss_pred CeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCccc
Q 040732 201 NVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLR 250 (541)
Q Consensus 201 ~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR 250 (541)
+.+++.++ |+++..+++ +|++...+|+. +.||.||.|.......+
T Consensus 223 g~~i~l~~~V~~I~~~~~---~v~v~~~~g~~--~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 223 GGEIRLNTPVTRIEREDG---GVTVTTEDGET--IEADAVISAVPPSVLKN 268 (450)
T ss_dssp GGGEESSEEEEEEEEESS---EEEEEETTSSE--EEESEEEE-S-HHHHHT
T ss_pred CceeecCCcceecccccc---ccccccccceE--EecceeeecCchhhhhh
Confidence 55888888 999999887 45677788885 45999998887654443
No 263
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.80 E-value=8.9e-05 Score=75.12 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 186 GRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 186 ~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
....+.+++.+.+. |+++++++ |++++.+++.+.+|. ..+|++ +.+|.||.|-|..+.
T Consensus 173 ~~vvkni~~~l~~~-G~ei~f~t~VeDi~~~~~~~~~v~--~~~g~~--i~~~~vvlA~Grsg~ 231 (486)
T COG2509 173 PKVVKNIREYLESL-GGEIRFNTEVEDIEIEDNEVLGVK--LTKGEE--IEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHHhc-CcEEEeeeEEEEEEecCCceEEEE--ccCCcE--EecCEEEEccCcchH
Confidence 35788999999998 78888887 999998887665555 567775 459999999998763
No 264
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.80 E-value=8.4e-05 Score=78.78 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=27.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+||||||||||+|..+|.. .+|.+|+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 5899999999999988644 4799999999853
No 265
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.79 E-value=0.00062 Score=72.51 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.-+|+|||||.+|+-+|..|++.|.+|+|+|+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 3689999999999999999999999999999875
No 266
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.78 E-value=0.00039 Score=74.01 Aligned_cols=103 Identities=19% Similarity=0.220 Sum_probs=71.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.-+|+|||||+.|+-+|..+++.|.+|+|+|+.+.... +
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~------------------------------------~----- 212 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP------------------------------------G----- 212 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC------------------------------------C-----
Confidence 46899999999999999999999999999998752111 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
++ .++...+.+.+++. +++++.++ |+++..+++.+ .+++
T Consensus 213 -------------------------------------~d-~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~v-~v~~ 252 (466)
T PRK06115 213 -------------------------------------TD-TETAKTLQKALTKQ-GMKFKLGSKVTGATAGADGV-SLTL 252 (466)
T ss_pred -------------------------------------CC-HHHHHHHHHHHHhc-CCEEEECcEEEEEEEcCCeE-EEEE
Confidence 00 11334455555555 89999986 88887654432 2344
Q ss_pred Ec-CCCcEEEEEcCEEEEecCCCCcc
Q 040732 225 KT-KDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 225 ~~-~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.. .+|+..++.+|.||.|.|.....
T Consensus 253 ~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 253 EPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred EEcCCCceeEEEeCEEEEccCCcccc
Confidence 32 23444457799999999987554
No 267
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.77 E-value=2.6e-05 Score=83.74 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcC-CCcEEEEEcCEEEEecCCC
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTK-DGQEHKSYAPLTIVCDGGF 246 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~-~g~~~~v~a~lvV~AdG~~ 246 (541)
.+.+.|.+.+++. |++++.++ |+++..+++++.+|.+.+. +|+..++.||.||.+.-..
T Consensus 233 ~l~~aL~~~~~~~-G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 233 TLSDRLVEALKRD-GGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHhc-CCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 4778888888776 78898887 9999888777767776432 2222346699998887764
No 268
>PRK06370 mercuric reductase; Validated
Probab=97.77 E-value=0.00063 Score=72.44 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=70.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... . .
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------~------------------~---- 210 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP------------------R------------------E---- 210 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc------------------c------------------c----
Confidence 35899999999999999999999999999998752111 0 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
+ .++.+.+.+.+++. +++++.++ |+++..+++.+ .+.+
T Consensus 211 ----------------~-----------------------~~~~~~l~~~l~~~-GV~i~~~~~V~~i~~~~~~~-~v~~ 249 (463)
T PRK06370 211 ----------------D-----------------------EDVAAAVREILERE-GIDVRLNAECIRVERDGDGI-AVGL 249 (463)
T ss_pred ----------------C-----------------------HHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCEE-EEEE
Confidence 0 01334445555555 89999886 88887655432 3444
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
...++. .++.+|.||.|.|.....
T Consensus 250 ~~~~~~-~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 250 DCNGGA-PEITGSHILVAVGRVPNT 273 (463)
T ss_pred EeCCCc-eEEEeCEEEECcCCCcCC
Confidence 333332 346799999999977654
No 269
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.77 E-value=0.00015 Score=74.17 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=71.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCC--CcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchh
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDG--RRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDD 143 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G--~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~ 143 (541)
...|||||||-+|+.+|..|.++- .+|++|||+..... .|- ..
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~-------------------------~pl----------L~ 47 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLF-------------------------TPL----------LY 47 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcccc-------------------------chh----------hh
Confidence 457999999999999999999974 89999999874322 110 00
Q ss_pred hHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeeeeCCeEEEEE
Q 040732 144 CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFEENGIVKGVH 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~~~~~v~gV~ 223 (541)
.+. .|. ++..++.--+++.++...++++..++|+++..+..+| .
T Consensus 48 eva--------------~g~-------------------l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V---~ 91 (405)
T COG1252 48 EVA--------------TGT-------------------LSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKV---T 91 (405)
T ss_pred hhh--------------cCC-------------------CChhheeccHHHHhcccCceEEEEEEEEEEcccCCEE---E
Confidence 000 010 1111222333444554447999999999999887743 3
Q ss_pred EEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 224 YKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 224 v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
++++.. +.+|.+|.|.|+...
T Consensus 92 --~~~~~~--i~YD~LVvalGs~~~ 112 (405)
T COG1252 92 --LADLGE--ISYDYLVVALGSETN 112 (405)
T ss_pred --eCCCcc--ccccEEEEecCCcCC
Confidence 344443 559999999998765
No 270
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.76 E-value=0.00059 Score=72.15 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+-+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~ 190 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS 190 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 3579999999999999999999999999999975
No 271
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.75 E-value=3.2e-05 Score=79.11 Aligned_cols=35 Identities=40% Similarity=0.568 Sum_probs=32.4
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
+||+|||||++|+++|..|++.|.+|+|+|++...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 69999999999999999999999999999997643
No 272
>PLN02507 glutathione reductase
Probab=97.75 E-value=0.0006 Score=73.14 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=71.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... +
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------~----- 241 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR------------------------------------G----- 241 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc------------------------------------c-----
Confidence 35799999999999999999999999999998752110 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
++ .++.+.+.+.+++. +++++.++ |+++..+++. +.+
T Consensus 242 -------------------------------------~d-~~~~~~l~~~l~~~-GI~i~~~~~V~~i~~~~~~---~~v 279 (499)
T PLN02507 242 -------------------------------------FD-DEMRAVVARNLEGR-GINLHPRTNLTQLTKTEGG---IKV 279 (499)
T ss_pred -------------------------------------cC-HHHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCe---EEE
Confidence 00 11334444555555 89999986 8888765553 344
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
...+|++ +.+|.||.|.|.....
T Consensus 280 ~~~~g~~--i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 280 ITDHGEE--FVADVVLFATGRAPNT 302 (499)
T ss_pred EECCCcE--EEcCEEEEeecCCCCC
Confidence 4566764 5699999999987665
No 273
>PRK06116 glutathione reductase; Validated
Probab=97.74 E-value=0.00034 Score=74.21 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=70.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.-+|+|||||+.|+-+|..|++.|.+|+++++.+.... . +
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~----~----------------- 206 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-------------------G----F----------------- 206 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-------------------c----c-----------------
Confidence 35899999999999999999999999999998752111 0 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
+ .++.+.+.+.+++. +++++.++ |+++..+++.. +.+
T Consensus 207 ----------------~-----------------------~~~~~~l~~~L~~~-GV~i~~~~~V~~i~~~~~g~--~~v 244 (450)
T PRK06116 207 ----------------D-----------------------PDIRETLVEEMEKK-GIRLHTNAVPKAVEKNADGS--LTL 244 (450)
T ss_pred ----------------C-----------------------HHHHHHHHHHHHHC-CcEEECCCEEEEEEEcCCce--EEE
Confidence 0 01334444555555 89999887 88887654421 334
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+.+|++ +.+|.||.|.|.....
T Consensus 245 ~~~~g~~--i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 245 TLEDGET--LTVDCLIWAIGREPNT 267 (450)
T ss_pred EEcCCcE--EEeCEEEEeeCCCcCC
Confidence 4566764 5699999999976554
No 274
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=3.2e-05 Score=80.02 Aligned_cols=37 Identities=32% Similarity=0.352 Sum_probs=33.5
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPD 103 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~ 103 (541)
..|+|+|||+|||++|+.|+++|++|+|+|+++....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 3699999999999999999999999999999985543
No 275
>PLN02268 probable polyamine oxidase
Probab=97.73 E-value=3.3e-05 Score=81.53 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=31.9
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
+|+|||||++||++|+.|.+.|++|+|+|+++..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~ 35 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRI 35 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 7999999999999999999999999999998743
No 276
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.73 E-value=4e-05 Score=87.00 Aligned_cols=36 Identities=33% Similarity=0.468 Sum_probs=33.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
..++|+||||||||+++|+.|++.|++|+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 458999999999999999999999999999999864
No 277
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.72 E-value=0.00083 Score=71.17 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=69.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.-+|+|||||.+|+-+|..|++.|.+|+|+|+.+.... ++.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------~~d--- 206 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR------------------------------------GFD--- 206 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc------------------------------------ccC---
Confidence 35799999999999999999999999999998752111 000
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
.++...+.+.+++. +++++.++ |+++..+++. +.+
T Consensus 207 ----------------------------------------~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~---~~v 242 (446)
T TIGR01424 207 ----------------------------------------DDMRALLARNMEGR-GIRIHPQTSLTSITKTDDG---LKV 242 (446)
T ss_pred ----------------------------------------HHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCe---EEE
Confidence 11333444555555 89999886 8888765443 334
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
...+|++ +.+|.||.|.|.....
T Consensus 243 ~~~~g~~--i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 243 TLSHGEE--IVADVVLFATGRSPNT 265 (446)
T ss_pred EEcCCcE--eecCEEEEeeCCCcCC
Confidence 4456664 5699999999986554
No 278
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=6.4e-05 Score=72.71 Aligned_cols=122 Identities=18% Similarity=0.237 Sum_probs=71.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHH---HHHCCch
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLK---LVELGLD 142 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---l~~lgl~ 142 (541)
...|.|||||.||.-+|+.++++|++|.++|-++..... .-.+ ....|+...++.+. -...|+.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tp--aH~t-----------d~fAELVCSNSlr~~~~~navGlL 69 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTP--AHKT-----------DNFAELVCSNSLRSDALTNAVGLL 69 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCC--cccc-----------cchhhheeccccccchhhhhhHHH
Confidence 346899999999999999999999999999988643220 0000 11112222211110 1112322
Q ss_pred h-hHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCeEEEeee
Q 040732 143 D-CVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGTVTSLFE 214 (541)
Q Consensus 143 ~-~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~v~~l~~ 214 (541)
. .+...+. .+.......++ | ......++|..|.+.+.+.++++|.|+++.+.|+++-.
T Consensus 70 k~EMR~lgS------lii~~Ad~~~V--P------AGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~ 128 (439)
T COG1206 70 KAEMRLLGS------LIIEAADKHRV--P------AGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPP 128 (439)
T ss_pred HHHHHHhhh------HHhhhhhhccC--C------CCceeeecHhHHHHHHHHHHhcCCCEEEEccccccCCC
Confidence 1 1111100 00000000000 1 11235799999999999999999999999998888754
No 279
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.69 E-value=0.00056 Score=72.92 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 207 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD 207 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 589999999999999999999999999999875
No 280
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.67 E-value=0.00096 Score=70.72 Aligned_cols=101 Identities=18% Similarity=0.161 Sum_probs=70.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
+-+|+|||||..|+-+|..|++.|.+|+|+|+.+.... +
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~------------------------------------~----- 204 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR------------------------------------S----- 204 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc------------------------------------c-----
Confidence 35899999999999999999999999999998752111 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
++ ..+.+.+.+.+++. +++++.++ ++++..+++.. +.+
T Consensus 205 -------------------------------------~d-~~~~~~~~~~l~~~-gI~i~~~~~v~~i~~~~~~~--~~v 243 (450)
T TIGR01421 205 -------------------------------------FD-SMISETITEEYEKE-GINVHKLSKPVKVEKTVEGK--LVI 243 (450)
T ss_pred -------------------------------------cC-HHHHHHHHHHHHHc-CCEEEcCCEEEEEEEeCCce--EEE
Confidence 00 11334445555555 89999986 88887654321 334
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
..++|+ ..+.+|.||.|.|.....
T Consensus 244 ~~~~g~-~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 244 HFEDGK-SIDDVDELIWAIGRKPNT 267 (450)
T ss_pred EECCCc-EEEEcCEEEEeeCCCcCc
Confidence 445563 246799999999987654
No 281
>PRK12831 putative oxidoreductase; Provisional
Probab=97.67 E-value=5.7e-05 Score=80.16 Aligned_cols=38 Identities=32% Similarity=0.396 Sum_probs=34.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
.....||+||||||||+++|..|+++|++|+|+|+...
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~ 174 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE 174 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 34668999999999999999999999999999998753
No 282
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.66 E-value=6.6e-05 Score=79.42 Aligned_cols=38 Identities=45% Similarity=0.469 Sum_probs=33.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhh--CCCcEEEEecCCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGT--DGRRVHVIERDMTQ 101 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~--~G~~V~viEr~~~~ 101 (541)
....+|+||||||||+.+|..|++ .|++|+|+|+.+.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 345789999999999999999987 79999999999744
No 283
>PRK07846 mycothione reductase; Reviewed
Probab=97.64 E-value=0.0007 Score=71.74 Aligned_cols=34 Identities=32% Similarity=0.556 Sum_probs=31.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+.+|+|||||+.|+-+|..|++.|.+|+++|+.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~ 199 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG 199 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 4589999999999999999999999999999875
No 284
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.63 E-value=0.00071 Score=72.08 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=70.7
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
-.|+|||||..|+-+|..|++.|.+|+++|+.+.... .
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~------------------~------------------------ 215 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP------------------G------------------------ 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC------------------C------------------------
Confidence 4799999999999999999999999999998752211 0
Q ss_pred hccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE
Q 040732 147 EIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYK 225 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~ 225 (541)
++ ..+...+.+.+++. +++++.++ ++++..+++. +.+.
T Consensus 216 ------------------------------------~d-~~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~~~~---~~v~ 254 (466)
T PRK07845 216 ------------------------------------ED-ADAAEVLEEVFARR-GMTVLKRSRAESVERTGDG---VVVT 254 (466)
T ss_pred ------------------------------------CC-HHHHHHHHHHHHHC-CcEEEcCCEEEEEEEeCCE---EEEE
Confidence 00 01233444555555 89999886 8888765553 4444
Q ss_pred cCCCcEEEEEcCEEEEecCCCCccc
Q 040732 226 TKDGQEHKSYAPLTIVCDGGFSNLR 250 (541)
Q Consensus 226 ~~~g~~~~v~a~lvV~AdG~~S~vR 250 (541)
..+|++ +.+|.||.|.|......
T Consensus 255 ~~~g~~--l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 255 LTDGRT--VEGSHALMAVGSVPNTA 277 (466)
T ss_pred ECCCcE--EEecEEEEeecCCcCCC
Confidence 566764 56999999999876653
No 285
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.60 E-value=0.00075 Score=71.83 Aligned_cols=34 Identities=35% Similarity=0.532 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+-+|+|||||+.|+-+|..|++.|.+|+++|+.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4589999999999999999999999999999875
No 286
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.60 E-value=0.00077 Score=72.77 Aligned_cols=97 Identities=29% Similarity=0.337 Sum_probs=72.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
..+|+|||||..|+-+|..|+..|.+|+|+++++....
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------------------------------------------ 388 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------------------------------------------ 388 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc------------------------------------------
Confidence 35899999999999999999999999999998751100
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
...|.+.+.+.+||+++.++ ++++..+++.+.++++
T Consensus 389 -------------------------------------------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~ 425 (517)
T PRK15317 389 -------------------------------------------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTY 425 (517)
T ss_pred -------------------------------------------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEE
Confidence 00112233334589999987 8888776677777777
Q ss_pred Ec-CCCcEEEEEcCEEEEecCCCC
Q 040732 225 KT-KDGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 225 ~~-~~g~~~~v~a~lvV~AdG~~S 247 (541)
.+ .+|++.++.+|.|+.|.|...
T Consensus 426 ~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 426 KDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred EECCCCcEEEEEcCEEEEeECCcc
Confidence 65 356666788999999999654
No 287
>PLN02568 polyamine oxidase
Probab=97.60 E-value=7.8e-05 Score=80.32 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=34.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCC-----CcEEEEecCCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDG-----RRVHVIERDMTQ 101 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G-----~~V~viEr~~~~ 101 (541)
+...||+|||||++|+++|..|++.| ++|+|+|++...
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 45679999999999999999999887 899999998744
No 288
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.58 E-value=7.4e-05 Score=75.89 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=34.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQP 102 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~ 102 (541)
..-+|+|||||+||+++|+.|++.|++|.++||.++..
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 34689999999999999999999999999999998543
No 289
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=9.1e-05 Score=71.67 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQP 102 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~ 102 (541)
.+|++|||||.+|+.+|..|+++|.+|+||||++...
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 3799999999999999999999999999999998543
No 290
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.56 E-value=0.0011 Score=71.64 Aligned_cols=97 Identities=28% Similarity=0.359 Sum_probs=69.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+....
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------------------------------------------ 389 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------------------------------------------ 389 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------------------------------------------
Confidence 35899999999999999999999999999997641000
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
.+.+.+.+.+..+|+++.++ ++++..+++++.+|++
T Consensus 390 -------------------------------------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~ 426 (515)
T TIGR03140 390 -------------------------------------------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRY 426 (515)
T ss_pred -------------------------------------------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEE
Confidence 00122333333489999987 7888766667767776
Q ss_pred EcC-CCcEEEEEcCEEEEecCCCC
Q 040732 225 KTK-DGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 225 ~~~-~g~~~~v~a~lvV~AdG~~S 247 (541)
.+. +|+..++.+|.||.|.|...
T Consensus 427 ~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 427 QDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred EECCCCcEEEEEcCEEEEEeCCcC
Confidence 542 45555678999999999654
No 291
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.55 E-value=0.00013 Score=76.28 Aligned_cols=47 Identities=15% Similarity=0.134 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCCcEEEECCChHHHHHHHHH-hhCCCcEEEEecCCCCC
Q 040732 56 NRHSSPESVAGPDVIVVGAGVAGAALAHTL-GTDGRRVHVIERDMTQP 102 (541)
Q Consensus 56 ~~~~~~~~~~~~dVvIVGaG~aGl~~A~~L-a~~G~~V~viEr~~~~~ 102 (541)
+.|..........|+||||||||+.+|..| ++.|++|+|+||.+.+.
T Consensus 29 ~~~~~~~~~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 29 GKCFFTNEAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred ccccCCCCCCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 333333334567899999999999999975 46799999999998553
No 292
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.55 E-value=0.00041 Score=78.69 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=30.4
Q ss_pred CcEEEECCChHHHHHHHHHhhC----CCcEEEEecCCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTD----GRRVHVIERDMTQ 101 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~----G~~V~viEr~~~~ 101 (541)
.+|||||||+||+.+|..|.+. +.+|+|+++.+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 4899999999999999999754 5799999998743
No 293
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.55 E-value=0.0018 Score=68.63 Aligned_cols=34 Identities=29% Similarity=0.587 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..+|+|||||+.|+-+|..|++.|.+|+++|+.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 3589999999999999999999999999999875
No 294
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.55 E-value=0.00099 Score=70.48 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=70.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... .
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------~----------------------- 196 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP------------------R----------------------- 196 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC------------------C-----------------------
Confidence 34899999999999999999999999999998752111 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
.+ ..+.+.+.+.+++. +++++.++ ++++..+++. +.+
T Consensus 197 -------------------------------------~~-~~~~~~l~~~l~~~-gV~v~~~~~v~~i~~~~~~---v~v 234 (441)
T PRK08010 197 -------------------------------------ED-RDIADNIATILRDQ-GVDIILNAHVERISHHENQ---VQV 234 (441)
T ss_pred -------------------------------------cC-HHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCE---EEE
Confidence 00 11334455556555 89999886 8888765543 344
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
..++++ +.+|.||.|.|.....
T Consensus 235 ~~~~g~---i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 235 HSEHAQ---LAVDALLIASGRQPAT 256 (441)
T ss_pred EEcCCe---EEeCEEEEeecCCcCC
Confidence 444443 4599999999987754
No 295
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00012 Score=70.95 Aligned_cols=35 Identities=29% Similarity=0.572 Sum_probs=32.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
++||+|||||.||+++|+.|+++|.++.||-+..+
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 68999999999999999999999999999998753
No 296
>PRK10262 thioredoxin reductase; Provisional
Probab=97.52 E-value=0.0014 Score=66.18 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=70.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
.-+|+|||+|..|+-+|..|++.|.+|+++++.+.... .
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~-------------------------~---------------- 184 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA-------------------------E---------------- 184 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC-------------------------C----------------
Confidence 35899999999999999999999999999998752100 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
..+.+.+.+.+++. +++++.++ ++++..+++.+.+|++
T Consensus 185 ----------------------------------------~~~~~~~~~~l~~~-gV~i~~~~~v~~v~~~~~~~~~v~~ 223 (321)
T PRK10262 185 ----------------------------------------KILIKRLMDKVENG-NIILHTNRTLEEVTGDQMGVTGVRL 223 (321)
T ss_pred ----------------------------------------HHHHHHHHhhccCC-CeEEEeCCEEEEEEcCCccEEEEEE
Confidence 00223334444444 89999876 8888766555666776
Q ss_pred EcC--CCcEEEEEcCEEEEecCCCC
Q 040732 225 KTK--DGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 225 ~~~--~g~~~~v~a~lvV~AdG~~S 247 (541)
... +++..++.+|.||.|.|...
T Consensus 224 ~~~~~~~~~~~i~~D~vv~a~G~~p 248 (321)
T PRK10262 224 RDTQNSDNIESLDVAGLFVAIGHSP 248 (321)
T ss_pred EEcCCCCeEEEEECCEEEEEeCCcc
Confidence 543 23445678999999999654
No 297
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.51 E-value=0.00056 Score=70.77 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHhhC--CCcEEEEecCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTD--GRRVHVIERDMT 100 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~--G~~V~viEr~~~ 100 (541)
.+|||||||+||+.+|..|++. ..+|+|+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 4899999999999999999875 458999999863
No 298
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.51 E-value=0.00037 Score=78.88 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=28.5
Q ss_pred EEEECCChHHHHHHHHHhhC---CCcEEEEecCCCC
Q 040732 69 VIVVGAGVAGAALAHTLGTD---GRRVHVIERDMTQ 101 (541)
Q Consensus 69 VvIVGaG~aGl~~A~~La~~---G~~V~viEr~~~~ 101 (541)
|||||||+||+.+|..|.+. +.+|+|||+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 68999999999999998764 5699999998743
No 299
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.50 E-value=0.00013 Score=77.23 Aligned_cols=37 Identities=38% Similarity=0.437 Sum_probs=34.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
...++|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~ 167 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK 167 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4568999999999999999999999999999999753
No 300
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.50 E-value=0.00011 Score=82.37 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=33.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
....+|+||||||||+++|+.|++.|++|+|+|+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 466899999999999999999999999999999853
No 301
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.49 E-value=0.00014 Score=77.44 Aligned_cols=38 Identities=42% Similarity=0.554 Sum_probs=34.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
...++|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 45679999999999999999999999999999998643
No 302
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.49 E-value=0.0011 Score=65.02 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
...+|.|||+|++||++|+.|+++ .+|+++|.+...
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rl 42 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRL 42 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccc
Confidence 456899999999999999999976 799999998643
No 303
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.49 E-value=0.001 Score=70.02 Aligned_cols=34 Identities=29% Similarity=0.585 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 3589999999999999999999999999999875
No 304
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.48 E-value=0.0005 Score=70.67 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHhhC--CC-cEEEEecCCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTD--GR-RVHVIERDMTQ 101 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~--G~-~V~viEr~~~~ 101 (541)
++|+|||+|++|+.+|.+|.+. .. .|.|+|+.+..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 6899999999999999999875 22 39999998754
No 305
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0011 Score=64.63 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=33.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..+||.||||||-+||++|-.+++.|.+|.++|--.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~ 52 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVK 52 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc
Confidence 578999999999999999999999999999999653
No 306
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.47 E-value=0.00014 Score=80.64 Aligned_cols=37 Identities=35% Similarity=0.490 Sum_probs=33.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
....+|+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3567999999999999999999999999999999864
No 307
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.45 E-value=0.00098 Score=75.46 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=68.7
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+..-. + .+ +
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~------------------~---------------~l------d 181 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA------------------K---------------QL------D 181 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh------------------h---------------hc------C
Confidence 4799999999999999999999999999998752111 0 00 0
Q ss_pred hccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE
Q 040732 147 EIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYK 225 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~ 225 (541)
....+.+.+.+++. +|+++.++ ++++..+ +.+.+|+
T Consensus 182 ---------------------------------------~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~-~~~~~v~-- 218 (785)
T TIGR02374 182 ---------------------------------------QTAGRLLQRELEQK-GLTFLLEKDTVEIVGA-TKADRIR-- 218 (785)
T ss_pred ---------------------------------------HHHHHHHHHHHHHc-CCEEEeCCceEEEEcC-CceEEEE--
Confidence 01233444555555 89999987 7777654 3334444
Q ss_pred cCCCcEEEEEcCEEEEecCCCCc
Q 040732 226 TKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 226 ~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
+++|++ +.+|+||.|.|....
T Consensus 219 ~~dG~~--i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 219 FKDGSS--LEADLIVMAAGIRPN 239 (785)
T ss_pred ECCCCE--EEcCEEEECCCCCcC
Confidence 567875 559999999998754
No 308
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.45 E-value=0.00015 Score=83.75 Aligned_cols=37 Identities=32% Similarity=0.247 Sum_probs=33.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
...+|+|||||||||++|..|++.|++|+|+|+.+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 4679999999999999999999999999999997643
No 309
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.45 E-value=0.00021 Score=71.72 Aligned_cols=38 Identities=34% Similarity=0.440 Sum_probs=32.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcE--EEEecCCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRV--HVIERDMTQ 101 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V--~viEr~~~~ 101 (541)
....+|+|||||++||++|+.|++.+-+| +|+|..+..
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 45679999999999999999999998765 569998743
No 310
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.44 E-value=0.001 Score=75.55 Aligned_cols=100 Identities=25% Similarity=0.253 Sum_probs=70.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
..++|||||..|+-+|..|++.|.+|+|+|+.+.... ..+ +
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~----------------------~~l-----------------d 186 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA----------------------EQL-----------------D 186 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh----------------------hhc-----------------C
Confidence 4799999999999999999999999999998752111 000 0
Q ss_pred hccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeC-CeEEEEEE
Q 040732 147 EIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEEN-GIVKGVHY 224 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~-~~v~gV~v 224 (541)
....+.+.+.+++. +|+++.++ ++++..++ +.+. .+
T Consensus 187 ---------------------------------------~~~~~~l~~~L~~~-GV~v~~~~~v~~I~~~~~~~~~--~v 224 (847)
T PRK14989 187 ---------------------------------------QMGGEQLRRKIESM-GVRVHTSKNTLEIVQEGVEARK--TM 224 (847)
T ss_pred ---------------------------------------HHHHHHHHHHHHHC-CCEEEcCCeEEEEEecCCCceE--EE
Confidence 01334455555555 89999987 77776542 2222 34
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
..++|++ +.+|+||.|.|...+.
T Consensus 225 ~~~dG~~--i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 225 RFADGSE--LEVDFIVFSTGIRPQD 247 (847)
T ss_pred EECCCCE--EEcCEEEECCCcccCc
Confidence 4567875 5599999999987653
No 311
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.44 E-value=0.00018 Score=80.09 Aligned_cols=38 Identities=39% Similarity=0.507 Sum_probs=34.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
....+|+|||||++|+++|+.|++.|++|+|+|++...
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 45689999999999999999999999999999998744
No 312
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.41 E-value=0.0024 Score=63.49 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=31.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 3589999999999999999999999999999864
No 313
>PLN02676 polyamine oxidase
Probab=97.40 E-value=0.0002 Score=76.42 Aligned_cols=37 Identities=35% Similarity=0.587 Sum_probs=33.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDMTQ 101 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~~~ 101 (541)
..+||+|||||++|+++|+.|+++|. +|+|+|++...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~ 62 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 45799999999999999999999998 69999998743
No 314
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.39 E-value=0.0014 Score=69.30 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 579999999999999999999999999999875
No 315
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.38 E-value=0.002 Score=69.18 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=68.4
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
-+|+|||||+.|+-+|..|++.|.+|+|+++.. ... . +.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l~-------------------~----~d----------------- 221 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PLR-------------------G----FD----------------- 221 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-ccc-------------------c----CC-----------------
Confidence 479999999999999999999999999998642 100 0 00
Q ss_pred hccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE
Q 040732 147 EIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYK 225 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~ 225 (541)
.++.+.+.+.+++. +++++.++ ++++...++. +.+.
T Consensus 222 ---------------------------------------~~~~~~l~~~l~~~-GV~i~~~~~v~~v~~~~~~---~~v~ 258 (499)
T PTZ00052 222 ---------------------------------------RQCSEKVVEYMKEQ-GTLFLEGVVPINIEKMDDK---IKVL 258 (499)
T ss_pred ---------------------------------------HHHHHHHHHHHHHc-CCEEEcCCeEEEEEEcCCe---EEEE
Confidence 01334445555555 89999887 7777654442 3344
Q ss_pred cCCCcEEEEEcCEEEEecCCCCccc
Q 040732 226 TKDGQEHKSYAPLTIVCDGGFSNLR 250 (541)
Q Consensus 226 ~~~g~~~~v~a~lvV~AdG~~S~vR 250 (541)
..+|++ +.+|.||.|.|......
T Consensus 259 ~~~g~~--i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 259 FSDGTT--ELFDTVLYATGRKPDIK 281 (499)
T ss_pred ECCCCE--EEcCEEEEeeCCCCCcc
Confidence 556765 45999999999876543
No 316
>PTZ00058 glutathione reductase; Provisional
Probab=97.37 E-value=0.0021 Score=69.58 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=31.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.-+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 4689999999999999999999999999999875
No 317
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00018 Score=77.67 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCC--cEEEEEcCEEEEecCCCCccc
Q 040732 190 QRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDG--QEHKSYAPLTIVCDGGFSNLR 250 (541)
Q Consensus 190 ~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g--~~~~v~a~lvV~AdG~~S~vR 250 (541)
..+...+.+.||.++..+. |+.++.+.+++++|++...++ .+..+.++.||.|.|...+-+
T Consensus 206 ~a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~ 269 (542)
T COG2303 206 RAYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPK 269 (542)
T ss_pred hhcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHH
Confidence 3344446677899999987 999999999999999987654 355567889999999876433
No 318
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.37 E-value=0.0021 Score=68.63 Aligned_cols=32 Identities=31% Similarity=0.309 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
-+++|||||+.|+-+|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 47999999999999999999999999999864
No 319
>PRK14694 putative mercuric reductase; Provisional
Probab=97.37 E-value=0.0021 Score=68.47 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=30.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
..+|+|||||+.|+-+|..|++.|.+|+++++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 358999999999999999999999999999864
No 320
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.36 E-value=0.0018 Score=67.61 Aligned_cols=102 Identities=26% Similarity=0.316 Sum_probs=71.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
..+|+|||+|++|+.+|..|+++|++|+++|+.+.... .. +
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~------------------~~----~----------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG------------------QL----L----------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccch------------------hh----h-----------------
Confidence 36999999999999999999999999999999873222 00 0
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
. ..+...+.+...+. +++++.++ ++++....+......+
T Consensus 177 --------------------------------------~-~~~~~~~~~~l~~~-gi~~~~~~~~~~i~~~~~~~~~~~~ 216 (415)
T COG0446 177 --------------------------------------D-PEVAEELAELLEKY-GVELLLGTKVVGVEGKGNTLVVERV 216 (415)
T ss_pred --------------------------------------h-HHHHHHHHHHHHHC-CcEEEeCCceEEEEcccCcceeeEE
Confidence 0 12445556666666 69998887 8888776543322113
Q ss_pred EcCCCcEEEEEcCEEEEecCCCCc
Q 040732 225 KTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 225 ~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
...++.. +.+|+++.+.|..-+
T Consensus 217 ~~~~~~~--~~~d~~~~~~g~~p~ 238 (415)
T COG0446 217 VGIDGEE--IKADLVIIGPGERPN 238 (415)
T ss_pred EEeCCcE--EEeeEEEEeeccccc
Confidence 3445554 459999999997654
No 321
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.36 E-value=0.0018 Score=68.54 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 3579999999999999999999999999999764
No 322
>PLN02529 lysine-specific histone demethylase 1
Probab=97.35 E-value=0.00026 Score=78.37 Aligned_cols=37 Identities=41% Similarity=0.442 Sum_probs=34.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
....||+|||||++|+++|..|+++|++|+|+|+...
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 4567999999999999999999999999999999764
No 323
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.35 E-value=0.0025 Score=68.03 Aligned_cols=101 Identities=13% Similarity=0.187 Sum_probs=68.5
Q ss_pred CCcEEEECCChHHHHHHHHHhh---CCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCch
Q 040732 66 GPDVIVVGAGVAGAALAHTLGT---DGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLD 142 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~---~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~ 142 (541)
.-+|+|||||+.|+-+|..++. .|.+|+|+|+.+.... .
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~----------------------------------~---- 228 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR----------------------------------G---- 228 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc----------------------------------c----
Confidence 3579999999999999976654 4999999998752111 0
Q ss_pred hhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEE
Q 040732 143 DCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKG 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~g 221 (541)
++ .++.+.+.+.+++. +++++.++ ++++..+++....
T Consensus 229 ----------------------------------------~d-~~~~~~l~~~L~~~-GI~i~~~~~v~~i~~~~~~~~~ 266 (486)
T TIGR01423 229 ----------------------------------------FD-STLRKELTKQLRAN-GINIMTNENPAKVTLNADGSKH 266 (486)
T ss_pred ----------------------------------------cC-HHHHHHHHHHHHHc-CCEEEcCCEEEEEEEcCCceEE
Confidence 00 12445555555555 89999987 8888755433222
Q ss_pred EEEEcCCCcEEEEEcCEEEEecCCCCccc
Q 040732 222 VHYKTKDGQEHKSYAPLTIVCDGGFSNLR 250 (541)
Q Consensus 222 V~v~~~~g~~~~v~a~lvV~AdG~~S~vR 250 (541)
+ ...+|++ +.+|.||.|.|......
T Consensus 267 v--~~~~g~~--i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 267 V--TFESGKT--LDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred E--EEcCCCE--EEcCEEEEeeCCCcCcc
Confidence 3 3455654 56999999999876553
No 324
>PRK14727 putative mercuric reductase; Provisional
Probab=97.34 E-value=0.0021 Score=68.68 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=68.4
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
-+|+|||||..|+-+|..|++.|.+|+|+++.. ... . + +
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~l~------------------~-----~-----------------d 227 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST-LLF------------------R-----E-----------------D 227 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-CCC------------------c-----c-----------------h
Confidence 579999999999999999999999999998742 100 0 0 0
Q ss_pred hccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE
Q 040732 147 EIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYK 225 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~ 225 (541)
..+.+.+.+.+++. +++++.++ |+++..+++. +.+.
T Consensus 228 ---------------------------------------~~~~~~l~~~L~~~-GV~i~~~~~V~~i~~~~~~---~~v~ 264 (479)
T PRK14727 228 ---------------------------------------PLLGETLTACFEKE-GIEVLNNTQASLVEHDDNG---FVLT 264 (479)
T ss_pred ---------------------------------------HHHHHHHHHHHHhC-CCEEEcCcEEEEEEEeCCE---EEEE
Confidence 01334445555555 89999886 8887765543 3444
Q ss_pred cCCCcEEEEEcCEEEEecCCCCccc
Q 040732 226 TKDGQEHKSYAPLTIVCDGGFSNLR 250 (541)
Q Consensus 226 ~~~g~~~~v~a~lvV~AdG~~S~vR 250 (541)
..+++ +.+|.||.|.|...+..
T Consensus 265 ~~~g~---i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 265 TGHGE---LRAEKLLISTGRHANTH 286 (479)
T ss_pred EcCCe---EEeCEEEEccCCCCCcc
Confidence 44443 56999999999987653
No 325
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.27 E-value=0.0023 Score=69.77 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeee-CCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEE-NGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~-~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+...|.+.+.+. +|++..++ +++++.+ +++|.||.+.. .+|+...+.|+.||.|+|+++.+
T Consensus 127 ~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 127 ALLHTLYQGNLKN-GTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHhcc-CCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 5788888888765 89999987 9999874 68999998754 67887788999999999999864
No 326
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.27 E-value=0.00037 Score=77.24 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=34.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
....+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34579999999999999999999999999999998643
No 327
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.26 E-value=0.00042 Score=70.98 Aligned_cols=36 Identities=39% Similarity=0.501 Sum_probs=32.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
...+|+|||||++|+.+|..|++.|.+|+|+|+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 446899999999999999999999999999999863
No 328
>PRK13748 putative mercuric reductase; Provisional
Probab=97.24 E-value=0.0052 Score=67.19 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
+-+|+|||||+.|+-+|..|++.|.+|+|+++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 357999999999999999999999999999974
No 329
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.24 E-value=0.00051 Score=73.41 Aligned_cols=36 Identities=44% Similarity=0.621 Sum_probs=33.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
...+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 447999999999999999999999999999999864
No 330
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.23 E-value=0.00039 Score=73.96 Aligned_cols=36 Identities=42% Similarity=0.568 Sum_probs=33.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
...+|+||||||+|+++|..|++.|.+|+|+|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 567999999999999999999999999999999864
No 331
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.19 E-value=0.00097 Score=67.71 Aligned_cols=142 Identities=23% Similarity=0.259 Sum_probs=77.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCC--cEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCc
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGR--RVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGL 141 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~--~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl 141 (541)
.....|+|||||.++.-++..|.+.+- +|+++=|++.......+ ....+.+.|..++.+..+..
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s--------------~f~ne~f~P~~v~~f~~l~~ 253 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDS--------------PFVNEIFSPEYVDYFYSLPD 253 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB------------------CCHHGGGSHHHHHHHHTS-H
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccc--------------cchhhhcCchhhhhhhcCCH
Confidence 456799999999999999999998875 89999998754321111 34456778887777766654
Q ss_pred hhhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHH-----HHHHcCCCeEEEeCe-EEEeeee
Q 040732 142 DDCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMR-----EKAASLPNVRMEEGT-VTSLFEE 215 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~-----~~~~~~~~v~v~~~~-v~~l~~~ 215 (541)
.....-+..... ..+. .++. ++.+.|+ +.+...+.+++..++ |+++...
T Consensus 254 ~~R~~~l~~~~~-------------~ny~-----------~i~~-~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~ 308 (341)
T PF13434_consen 254 EERRELLREQRH-------------TNYG-----------GIDP-DLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQD 308 (341)
T ss_dssp HHHHHHHHHTGG-------------GTSS-----------EB-H-HHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEE
T ss_pred HHHHHHHHHhHh-------------hcCC-----------CCCH-HHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEEC
Confidence 332222111000 0000 1221 2333332 334444568888887 8888877
Q ss_pred C-CeEEEEEEEc-CCCcEEEEEcCEEEEecCC
Q 040732 216 N-GIVKGVHYKT-KDGQEHKSYAPLTIVCDGG 245 (541)
Q Consensus 216 ~-~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~ 245 (541)
+ +.+ .++++. ..|+..+..+|.||.|||.
T Consensus 309 ~~~~~-~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 309 GDGGV-RLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp S-SSE-EEEEEETTT--EEEEEESEEEE---E
T ss_pred CCCEE-EEEEEECCCCCeEEEecCEEEEcCCc
Confidence 6 343 355554 4566677889999999994
No 332
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.16 E-value=0.00054 Score=75.83 Aligned_cols=37 Identities=35% Similarity=0.482 Sum_probs=34.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
...+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 4689999999999999999999999999999998743
No 333
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.14 E-value=0.002 Score=66.11 Aligned_cols=51 Identities=27% Similarity=0.314 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCC
Q 040732 188 FIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 188 l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S 247 (541)
+.+...+.+++. ||++..++ |+++..+ +|++ ++|++ ++.++.+|-|.|...
T Consensus 211 l~~~a~~~L~~~-GV~v~l~~~Vt~v~~~-----~v~~--~~g~~-~I~~~tvvWaaGv~a 262 (405)
T COG1252 211 LSKYAERALEKL-GVEVLLGTPVTEVTPD-----GVTL--KDGEE-EIPADTVVWAAGVRA 262 (405)
T ss_pred HHHHHHHHHHHC-CCEEEcCCceEEECCC-----cEEE--ccCCe-eEecCEEEEcCCCcC
Confidence 444445555556 99999998 8887664 3454 44554 477999999999864
No 334
>PLN02546 glutathione reductase
Probab=97.13 E-value=0.0051 Score=66.69 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.-+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 3589999999999999999999999999999875
No 335
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.12 E-value=0.004 Score=66.01 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.-+|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3589999999999999999999999999999874
No 336
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.10 E-value=0.0048 Score=64.91 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHhh--------------CCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGT--------------DGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~--------------~G~~V~viEr~~ 99 (541)
.|+|||||++|+-+|..|+. .|.+|+|+|+.+
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 220 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGS 220 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCC
Confidence 79999999999999999875 478899998875
No 337
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.98 E-value=0.0049 Score=63.13 Aligned_cols=33 Identities=30% Similarity=0.311 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCc-EEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRR-VHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~-V~viEr~~ 99 (541)
-.|+|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5799999999999999999999997 99999764
No 338
>PLN02976 amine oxidase
Probab=96.93 E-value=0.0014 Score=75.95 Aligned_cols=39 Identities=41% Similarity=0.490 Sum_probs=35.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
.....+|+|||||++|+++|+.|++.|++|+|+|+++..
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 345689999999999999999999999999999997644
No 339
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.92 E-value=0.0011 Score=69.68 Aligned_cols=37 Identities=43% Similarity=0.581 Sum_probs=33.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
....|.||||||||+++|..|++.|++|+|+|+.+..
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 3479999999999999999999999999999998743
No 340
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.91 E-value=0.0011 Score=67.87 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=31.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCC-CcEEEEecCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDG-RRVHVIERDMT 100 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G-~~V~viEr~~~ 100 (541)
....|||||||+||+++|..|-+.| .+|+|+|....
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dR 56 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDR 56 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccc
Confidence 4458999999999999999999665 58999998863
No 341
>PLN03000 amine oxidase
Probab=96.89 E-value=0.0014 Score=73.23 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=34.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQP 102 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~ 102 (541)
...+|+|||||++|+++|..|++.|++|+|+|++....
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG 220 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG 220 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence 45799999999999999999999999999999987443
No 342
>PRK13984 putative oxidoreductase; Provisional
Probab=96.88 E-value=0.0015 Score=72.09 Aligned_cols=38 Identities=34% Similarity=0.338 Sum_probs=34.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
....+|+|||||++|+++|..|+++|++|+|+|+.+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45678999999999999999999999999999998743
No 343
>PRK12831 putative oxidoreductase; Provisional
Probab=96.87 E-value=0.0089 Score=63.57 Aligned_cols=35 Identities=34% Similarity=0.419 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..-+|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34689999999999999999999999999999864
No 344
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.84 E-value=0.015 Score=64.12 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 479999999999999999999999999999875
No 345
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.79 E-value=0.012 Score=62.70 Aligned_cols=51 Identities=27% Similarity=0.221 Sum_probs=36.4
Q ss_pred HHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE---cC-------CCcEEEEEcCEEEEecCCCC
Q 040732 196 AASLPNVRMEEGT-VTSLFEENGIVKGVHYK---TK-------DGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 196 ~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~---~~-------~g~~~~v~a~lvV~AdG~~S 247 (541)
+.+. |++++.++ ++++..+++++.+|++. .. .|++.++.+|.||.|.|...
T Consensus 339 ~~~~-GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p 400 (471)
T PRK12810 339 AHEE-GVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTG 400 (471)
T ss_pred HHHc-CCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCC
Confidence 3444 89999887 88887667778777653 11 24556788999999999554
No 346
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.66 E-value=0.019 Score=62.60 Aligned_cols=34 Identities=41% Similarity=0.499 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.-+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 4589999999999999999999999999999875
No 347
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.64 E-value=0.018 Score=59.23 Aligned_cols=101 Identities=30% Similarity=0.314 Sum_probs=72.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
...|++||+|-.|+-+|..|.-.+.+|+++++.+.+-. +..+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~------------------~lf~-------------------- 254 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP------------------RLFG-------------------- 254 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh------------------hhhh--------------------
Confidence 55799999999999999999999999999999874433 1000
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeC-CeEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEEN-GIVKGVH 223 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~-~~v~gV~ 223 (541)
..+.+...+...+. ++++..++ +.++..+. +++. .
T Consensus 255 ----------------------------------------~~i~~~~~~y~e~k-gVk~~~~t~~s~l~~~~~Gev~--~ 291 (478)
T KOG1336|consen 255 ----------------------------------------PSIGQFYEDYYENK-GVKFYLGTVVSSLEGNSDGEVS--E 291 (478)
T ss_pred ----------------------------------------HHHHHHHHHHHHhc-CeEEEEecceeecccCCCCcEE--E
Confidence 01333334444444 89999998 77777654 5554 4
Q ss_pred EEcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 224 YKTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 224 v~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
+...+|.+. .||+||.+.|+...+
T Consensus 292 V~l~dg~~l--~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 292 VKLKDGKTL--EADLVVVGIGIKPNT 315 (478)
T ss_pred EEeccCCEe--ccCeEEEeecccccc
Confidence 456788864 599999999987653
No 348
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.58 E-value=0.0044 Score=66.06 Aligned_cols=40 Identities=35% Similarity=0.424 Sum_probs=35.4
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHhhC-CCcEEEEecCCCC
Q 040732 62 ESVAGPDVIVVGAGVAGAALAHTLGTD-GRRVHVIERDMTQ 101 (541)
Q Consensus 62 ~~~~~~dVvIVGaG~aGl~~A~~La~~-G~~V~viEr~~~~ 101 (541)
+....||.||||||-|||.+|..|++. -++|+|+|+...+
T Consensus 53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 53 ELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 346789999999999999999999976 5799999998765
No 349
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.57 E-value=0.0069 Score=59.48 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=32.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
..+||.+|||||-.|++.|...+.+|.+|.|+|..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 35899999999999999999999999999999975
No 350
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.56 E-value=0.0023 Score=64.85 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCCeEEEeC-eEEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCCcccccc
Q 040732 187 RFIQRMREKAASLPNVRMEEG-TVTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNLRRSL 253 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~-~v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~vR~~l 253 (541)
.+...+.+.+++. |.++... +|.++..+++.++||.+ +||++. +++.||-=.+.+-+.-+.+
T Consensus 265 avs~aia~~~~~~-GaeI~tka~Vq~Illd~gka~GV~L--~dG~ev--~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 265 AVSFAIAEGAKRA-GAEIFTKATVQSILLDSGKAVGVRL--ADGTEV--RSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHHHHHHhc-cceeeehhhhhheeccCCeEEEEEe--cCCcEE--EeeeeecCCchHHHHHHhC
Confidence 4677788888888 5666655 59999988899988885 678865 4899997777776654544
No 351
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.56 E-value=0.027 Score=58.70 Aligned_cols=37 Identities=30% Similarity=0.414 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHhhC----CCcEEEEecCCCCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTD----GRRVHVIERDMTQPD 103 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~----G~~V~viEr~~~~~~ 103 (541)
.++=|||+|+|+|++|..|-|. |-+|+|+|+.+....
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GG 43 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGG 43 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCC
Confidence 4688999999999999999985 579999999875443
No 352
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.47 E-value=0.019 Score=57.27 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=72.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
-+...+|||||..||-++..-.|.|-+|+++|-.+.... .+
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~-----------------------~m---------------- 250 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG-----------------------VM---------------- 250 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc-----------------------cc----------------
Confidence 345789999999999999999999999999997652111 00
Q ss_pred HhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEE
Q 040732 145 VEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVH 223 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~ 223 (541)
+ .++.....+.+.++ ++.+..++ |+....+.+..+.++
T Consensus 251 ----------------D------------------------~Eisk~~qr~L~kQ-gikF~l~tkv~~a~~~~dg~v~i~ 289 (506)
T KOG1335|consen 251 ----------------D------------------------GEISKAFQRVLQKQ-GIKFKLGTKVTSATRNGDGPVEIE 289 (506)
T ss_pred ----------------C------------------------HHHHHHHHHHHHhc-CceeEeccEEEEeeccCCCceEEE
Confidence 0 11223333333344 89999998 888877654333466
Q ss_pred EEc-CCCcEEEEEcCEEEEecCCC
Q 040732 224 YKT-KDGQEHKSYAPLTIVCDGGF 246 (541)
Q Consensus 224 v~~-~~g~~~~v~a~lvV~AdG~~ 246 (541)
+.+ +++++.+++||.+.+|.|.+
T Consensus 290 ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 290 VENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred EEecCCCceeEEEeeEEEEEccCc
Confidence 655 46777788999999999965
No 353
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.38 E-value=0.032 Score=57.16 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCC
Q 040732 186 GRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 186 ~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S 247 (541)
..+.+.|.+.+++. +|+++.++ |+++ +++. ..+.+.++.. .++||.||.|+|+.|
T Consensus 86 ~sVv~~L~~~l~~~-gV~i~~~~~V~~i--~~~~---~~v~~~~~~~-~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 86 APLLRAWLKRLAEQ-GVQFHTRHRWIGW--QGGT---LRFETPDGQS-TIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHHC-CCEEEeCCEEEEE--eCCc---EEEEECCCce-EEecCEEEEcCCCcc
Confidence 45889999999887 99999997 8888 3332 2333333322 367999999999976
No 354
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.33 E-value=0.031 Score=63.24 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=31.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCc-EEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRR-VHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~-V~viEr~~ 99 (541)
..+|+|||||.+|+-+|..+.+.|.+ |+|+++..
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 45899999999999999999999997 99999874
No 355
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.22 E-value=0.0027 Score=61.56 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=31.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhC-CC-cEEEEecCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTD-GR-RVHVIERDM 99 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~-G~-~V~viEr~~ 99 (541)
..++.|+|||||.+|+++|..+.+. |. +|.|+|...
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 5789999999999999999999875 54 799999764
No 356
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.19 E-value=0.0061 Score=60.57 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhC--CCcEEEEecCCCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTD--GRRVHVIERDMTQ 101 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~--G~~V~viEr~~~~ 101 (541)
...|+|||+||||..+|..|-++ +.+|.|+|+.+.+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 34899999999999999998874 6899999999854
No 357
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.11 E-value=0.0063 Score=67.81 Aligned_cols=37 Identities=38% Similarity=0.541 Sum_probs=34.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
.....|.|||.|||||++|-.|-|.|+.|+|+||...
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 3557999999999999999999999999999999873
No 358
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.11 E-value=0.018 Score=58.05 Aligned_cols=151 Identities=21% Similarity=0.223 Sum_probs=82.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCC-CcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCc
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDG-RRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGL 141 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G-~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl 141 (541)
|+..+|+|.||-||+-|++|+.|..++ .+++.+||.+.+.- ....+ .-|--||-.-++-|-.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~W--HpGml------------legstlQv~FlkDLVTl-- 65 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSW--HPGML------------LEGSTLQVPFLKDLVTL-- 65 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCc--CCCcc------------cCCccccccchhhhccc--
Confidence 467799999999999999999999875 78999999985532 11000 00111222211111111
Q ss_pred hhhHhhccceeeeeeEEE----ECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeC
Q 040732 142 DDCVEEIDAHPVVGYALF----KDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEEN 216 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~ 216 (541)
..|.+.+.+. ..++.. .|- ......+.|.++.+.+.=.+...|. +++|+ |+++...+
T Consensus 66 --------~~PTs~ySFLNYL~~h~RLy--~Fl------~~e~f~i~R~Ey~dY~~Waa~~l~~--~rfg~~V~~i~~~~ 127 (436)
T COG3486 66 --------VDPTSPYSFLNYLHEHGRLY--EFL------NYETFHIPRREYNDYCQWAASQLPS--LRFGEEVTDISSLD 127 (436)
T ss_pred --------cCCCCchHHHHHHHHcchHh--hhh------hhhcccccHHHHHHHHHHHHhhCCc--cccCCeeccccccC
Confidence 1121111111 012110 000 1112357788888888777776644 45665 77664322
Q ss_pred C-eEEEEEEEcCCCcEEEEEcCEEEEecCCCCcc
Q 040732 217 G-IVKGVHYKTKDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 217 ~-~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
+ .....-+.+.+++. .+|+-||...|..-.+
T Consensus 128 ~d~~~~~~~~t~~~~~--y~ar~lVlg~G~~P~I 159 (436)
T COG3486 128 GDAVVRLFVVTANGTV--YRARNLVLGVGTQPYI 159 (436)
T ss_pred CcceeEEEEEcCCCcE--EEeeeEEEccCCCcCC
Confidence 2 22222244556664 4599999999976543
No 359
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.07 E-value=0.063 Score=61.87 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.-+|+|||||.+|+=+|..+.+.|.+|+++.++.
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4589999999999999999999999999998874
No 360
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.05 E-value=0.059 Score=55.34 Aligned_cols=29 Identities=38% Similarity=0.601 Sum_probs=24.4
Q ss_pred CcEEEECCChHHHHHHHHHhh----CC--CcEEEE
Q 040732 67 PDVIVVGAGVAGAALAHTLGT----DG--RRVHVI 95 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~----~G--~~V~vi 95 (541)
.+|+|||||++|+-+|..|++ .| .+|+|+
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li 180 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI 180 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 489999999999999999985 34 368777
No 361
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.04 E-value=0.044 Score=61.03 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=30.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
..+|+|||||..|+-+|..+.+.|. +|+++++..
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 3589999999999999999999996 699998864
No 362
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.98 E-value=0.021 Score=57.77 Aligned_cols=48 Identities=25% Similarity=0.317 Sum_probs=34.7
Q ss_pred HHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCC
Q 040732 194 EKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 194 ~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S 247 (541)
+...+. ++.+..++ |.++..+ .+.+.+.||+..+|.+-++|.++|...
T Consensus 281 ~~f~~~-~I~~~~~t~Vk~V~~~-----~I~~~~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 281 NQFVRD-GIDLDTGTMVKKVTEK-----TIHAKTKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred HHhhhc-cceeecccEEEeecCc-----EEEEEcCCCceeeecceEEEecCCCCC
Confidence 333444 89999997 6666543 245556688888888999999999754
No 363
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.89 E-value=0.0078 Score=62.65 Aligned_cols=41 Identities=29% Similarity=0.427 Sum_probs=31.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCC
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPD 103 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~ 103 (541)
|+.+|||||+|-|..-+.+|.+|++.|.+|+.+||++....
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg 41 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGG 41 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCC
Confidence 56789999999999999999999999999999999975543
No 364
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.87 E-value=0.0069 Score=57.66 Aligned_cols=35 Identities=34% Similarity=0.668 Sum_probs=32.3
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQ 101 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~ 101 (541)
++++|||+|..|..+|..|.+.|.+|+++|+++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence 36999999999999999999999999999998754
No 365
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.67 E-value=0.079 Score=56.42 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
...|+|||+|..|+-+|..+.+.|. +|+|+++.+
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 4689999999999999999999995 799999875
No 366
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.64 E-value=0.06 Score=55.43 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=30.3
Q ss_pred CeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCC
Q 040732 201 NVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGG 245 (541)
Q Consensus 201 ~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~ 245 (541)
+++++.++ |+.+...+.. +.+.+|+... .+.+|.|+|.
T Consensus 141 gIe~~~~t~v~~~D~~~K~-----l~~~~Ge~~k--ys~LilATGs 179 (478)
T KOG1336|consen 141 GIELILGTSVVKADLASKT-----LVLGNGETLK--YSKLIIATGS 179 (478)
T ss_pred CceEEEcceeEEeeccccE-----EEeCCCceee--cceEEEeecC
Confidence 89999998 8888776653 3367888655 9999999998
No 367
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.49 E-value=0.015 Score=52.10 Aligned_cols=32 Identities=41% Similarity=0.594 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.|.|+|||..|.++|..|+++|++|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999874
No 368
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.46 E-value=0.17 Score=56.21 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=31.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
..-.|+|||||..|+-+|..+.+.|. +|+|+++..
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 34689999999999999999999997 699999875
No 369
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.45 E-value=0.062 Score=58.67 Aligned_cols=62 Identities=16% Similarity=0.330 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEc-CCCcEEEEEcCEEEEecCCCCcc
Q 040732 187 RFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKT-KDGQEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 187 ~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~-~~g~~~~v~a~lvV~AdG~~S~v 249 (541)
.+...|.+.+.+. +|++..++ +++++.+++++.||.+.+ .+|+...+.|+.||.|+|+++.+
T Consensus 120 ~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 120 AILHTLYQQNLKA-DTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred HHHHHHHHHHHhC-CCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 4788888888765 89999987 999998889999998754 57887788999999999999864
No 370
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.42 E-value=0.045 Score=59.25 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..+|||||.-|+=+|..|.+.|.+|.|++-.+
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~ 178 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP 178 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecc
Confidence 47999999999999999999999999998765
No 371
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.32 E-value=0.35 Score=51.53 Aligned_cols=61 Identities=21% Similarity=0.173 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcC--------CCeEEEeCe-EEEeee---eCCeEEEEEEEc---------------CCCcEEEEEcCEE
Q 040732 187 RFIQRMREKAASL--------PNVRMEEGT-VTSLFE---ENGIVKGVHYKT---------------KDGQEHKSYAPLT 239 (541)
Q Consensus 187 ~l~~~L~~~~~~~--------~~v~v~~~~-v~~l~~---~~~~v~gV~v~~---------------~~g~~~~v~a~lv 239 (541)
+..+.|.+.+.+. .++.+++.. -+++.. +++++.++++.. .+|+..++.+|.|
T Consensus 267 r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~V 346 (491)
T PLN02852 267 RVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLV 346 (491)
T ss_pred HHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEE
Confidence 3566666654332 258888776 677763 235788887641 1355667889999
Q ss_pred EEecCCCC
Q 040732 240 IVCDGGFS 247 (541)
Q Consensus 240 V~AdG~~S 247 (541)
|.|-|..|
T Consensus 347 i~aIG~~~ 354 (491)
T PLN02852 347 LKSIGYKS 354 (491)
T ss_pred EEeecCCC
Confidence 98888664
No 372
>PRK13984 putative oxidoreductase; Provisional
Probab=95.31 E-value=0.15 Score=56.20 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=25.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC------cEEEE
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGR------RVHVI 95 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~------~V~vi 95 (541)
.-+|+|||||..|+=+|..|++.|. +|+++
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~ 453 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVT 453 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEe
Confidence 3589999999999999999998753 56665
No 373
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.28 E-value=0.022 Score=52.21 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.|.|||||..|...|..+++.|++|+++|+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999975
No 374
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.31 Score=48.59 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=68.0
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhHh
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCVE 146 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~~ 146 (541)
.+|+|||||-+..=.|+.|++.+-+|+++=|++....
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------------------------------------- 180 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------------------------------------- 180 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------------------------------------------
Confidence 4999999999999999999999999999988753211
Q ss_pred hccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEE
Q 040732 147 EIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYK 225 (541)
Q Consensus 147 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~ 225 (541)
...+.+.+++.+++.+++++ +.++.-++ +.+|+++
T Consensus 181 ------------------------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~ 216 (305)
T COG0492 181 ------------------------------------------EEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLK 216 (305)
T ss_pred ------------------------------------------CHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEE
Confidence 12334445555689999986 77776655 6678876
Q ss_pred cCCCcEEEEEcCEEEEecCCCC
Q 040732 226 TKDGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 226 ~~~g~~~~v~a~lvV~AdG~~S 247 (541)
+..|++..+..|-+..+-|...
T Consensus 217 ~~~~~~~~~~~~gvf~~iG~~p 238 (305)
T COG0492 217 NVKGEEKELPVDGVFIAIGHLP 238 (305)
T ss_pred ecCCceEEEEeceEEEecCCCC
Confidence 6546655566777777666543
No 375
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.00 E-value=0.22 Score=57.95 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=29.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCc-EEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRR-VHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~-V~viEr~~ 99 (541)
..-+|+|||||.+|+=+|..+.+.|.+ |+++.+..
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 446899999999999999999999984 77887653
No 376
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.81 E-value=0.041 Score=48.67 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=29.5
Q ss_pred EEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 69 VIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 69 VvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
|+|+|+|..|+..|..|++.|.+|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999875
No 377
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.78 E-value=0.047 Score=58.45 Aligned_cols=34 Identities=41% Similarity=0.537 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
...|+|||+|++|+.+|..|+++|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3479999999999999999999999999999764
No 378
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.3 Score=48.29 Aligned_cols=84 Identities=27% Similarity=0.414 Sum_probs=63.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhh
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDC 144 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~ 144 (541)
+..||.|||||-+|.-+|+.|+--=..|+++|=.++.
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL------------------------------------------- 389 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL------------------------------------------- 389 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh-------------------------------------------
Confidence 5579999999999999999998654579999855411
Q ss_pred HhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEE
Q 040732 145 VEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVH 223 (541)
Q Consensus 145 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~ 223 (541)
+-.+.|.+++.+.||+++..+. -+++.-+..+|+|.+
T Consensus 390 ------------------------------------------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~ 427 (520)
T COG3634 390 ------------------------------------------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLE 427 (520)
T ss_pred ------------------------------------------hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceE
Confidence 1335667777888999999997 666666668899999
Q ss_pred EEcC-CCcEEE
Q 040732 224 YKTK-DGQEHK 233 (541)
Q Consensus 224 v~~~-~g~~~~ 233 (541)
+++. +|+.+.
T Consensus 428 Y~dr~sge~~~ 438 (520)
T COG3634 428 YRDRVSGEEHH 438 (520)
T ss_pred EEeccCCceeE
Confidence 8774 455444
No 379
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.49 E-value=0.04 Score=58.60 Aligned_cols=33 Identities=33% Similarity=0.418 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
.|+|||+|++|+++|..|++.|++|++.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 489999999999999999999999999998753
No 380
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.48 E-value=0.41 Score=55.18 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=30.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC-CC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTD-GR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~-G~-~V~viEr~~ 99 (541)
..-+|+|||||.+|+-+|..+.+. |. +|++++++.
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 356899999999999999998886 85 799999875
No 381
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=94.33 E-value=0.61 Score=49.97 Aligned_cols=35 Identities=34% Similarity=0.416 Sum_probs=29.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDMT 100 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~~ 100 (541)
...|+|||||..|+-+|..+.+.|. +|+++|+.+.
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 4589999999999999888877774 7999998753
No 382
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.19 E-value=0.051 Score=54.49 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+|.|||+|..|..+|..|+++|++|+++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999985
No 383
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.00 E-value=0.38 Score=53.46 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=30.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
...+|+|||+|..|+-+|..+.+.|. +|++++++.
T Consensus 450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 34689999999999999998888885 799999864
No 384
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.93 E-value=0.082 Score=53.14 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
...|.|||+|..|.+.|..|++.|++|+++.|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3579999999999999999999999999999864
No 385
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.91 E-value=0.058 Score=49.65 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=26.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+.|.|||.|-.|+.+|..|+++|++|+.+|.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 368999999999999999999999999999876
No 386
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.74 E-value=0.081 Score=52.40 Aligned_cols=33 Identities=39% Similarity=0.445 Sum_probs=31.2
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
.|.|||+|..|...|..+++.|++|+++|+++.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 699999999999999999999999999999863
No 387
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.71 E-value=0.083 Score=52.52 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=31.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999875
No 388
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.70 E-value=0.095 Score=48.87 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
....|+|||+|..|...|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 45689999999999999999999999 699999884
No 389
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.67 E-value=0.092 Score=52.56 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
++|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999999964
No 390
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.53 E-value=0.82 Score=52.68 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=29.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhC-C-CcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTD-G-RRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~-G-~~V~viEr~~ 99 (541)
.-+|+|||||.+|+=+|..+.+. | .+|+|+.|+.
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 45899999999999999998887 5 4899999875
No 391
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.48 E-value=0.11 Score=52.12 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..|.|||+|..|...|..++++|++|+++|+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999876
No 392
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.39 E-value=0.14 Score=44.40 Aligned_cols=35 Identities=34% Similarity=0.581 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCc-EEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRR-VHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~-V~viEr~~ 99 (541)
+...|+|||+|-+|-+++..|++.|.+ |+|+-|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 456899999999999999999999987 99999874
No 393
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.34 E-value=0.093 Score=52.03 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 369999999999999999999999999999875
No 394
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.29 E-value=0.11 Score=55.21 Aligned_cols=34 Identities=44% Similarity=0.627 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
...|+|+|+|.+|+++|..|+++|.+|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4579999999999999999999999999999864
No 395
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.20 E-value=0.13 Score=46.54 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=30.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.+..|+|+|+|.+|..||..|...|.+|+++|..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 45799999999999999999999999999999864
No 396
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.18 E-value=0.096 Score=51.96 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.|.|||+|..|...|..|+++|++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 58999999999999999999999999999886
No 397
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.14 E-value=0.097 Score=43.09 Aligned_cols=35 Identities=37% Similarity=0.526 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+...|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45689999999999999999999999999998773
No 398
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.13 E-value=0.14 Score=45.65 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=29.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEec
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIER 97 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr 97 (541)
....|+|||||..|..-|..|.+.|.+|+||.+
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 446799999999999999999999999999953
No 399
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.11 E-value=0.12 Score=43.33 Aligned_cols=32 Identities=38% Similarity=0.602 Sum_probs=28.7
Q ss_pred EEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 69 VIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 69 VvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
|+|||.|..|..+|..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999863
No 400
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.99 E-value=0.12 Score=51.62 Aligned_cols=30 Identities=37% Similarity=0.581 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEec
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIER 97 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr 97 (541)
+|.|+|+|..|.++|..|++.|.+|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999998
No 401
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.98 E-value=0.15 Score=49.65 Aligned_cols=35 Identities=31% Similarity=0.446 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
....|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 45689999999999999999999996 899999875
No 402
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.97 E-value=0.17 Score=47.46 Aligned_cols=34 Identities=32% Similarity=0.493 Sum_probs=30.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
...|+|||||.+|..-+..|.+.|.+|+|+++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3489999999999999999999999999998754
No 403
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=92.91 E-value=0.52 Score=53.76 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=25.7
Q ss_pred CCcEEEECCChHHHHHHHHHhh---CCCcEEEEecC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGT---DGRRVHVIERD 98 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~---~G~~V~viEr~ 98 (541)
...|||||||.+|+=+|..+.+ .+..+.+.+..
T Consensus 550 Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~ 585 (1028)
T PRK06567 550 RMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYI 585 (1028)
T ss_pred CCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhh
Confidence 4579999999999999986654 36677777664
No 404
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=0.13 Score=51.86 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=41.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcce
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRV 110 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~ 110 (541)
.+..+||||||-|..-..+|.+++|.|.+|+=+|+++..+..+.+-+.
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSm 52 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSM 52 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceee
Confidence 467899999999999999999999999999999999876665444443
No 405
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.87 E-value=0.13 Score=51.38 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.|.|||+|..|..+|..|++.|.+|++++|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 59999999999999999999999999999864
No 406
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.86 E-value=0.13 Score=52.86 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..+|+|+|+|.+|..+|..|.+.|.+|+++|+++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4579999999999999999999999999999874
No 407
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.86 E-value=0.13 Score=44.53 Aligned_cols=34 Identities=26% Similarity=0.654 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
+..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 3579999999999999999999998 799999875
No 408
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=92.81 E-value=0.72 Score=46.80 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=76.6
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHh--hCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHC
Q 040732 62 ESVAGPDVIVVGAGVAGAALAHTLG--TDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVEL 139 (541)
Q Consensus 62 ~~~~~~dVvIVGaG~aGl~~A~~La--~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~l 139 (541)
..+.+...+|||+|-+-.+++.+.. +.+.+|.+|--.++.+- +.|.-.+.|--.
T Consensus 174 ~~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPY------------------------mRPPLSKELW~~ 229 (659)
T KOG1346|consen 174 DLPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPY------------------------MRPPLSKELWWY 229 (659)
T ss_pred cCcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcc------------------------cCCCcchhceec
Confidence 3456788999999988877776665 35778988877765443 111111111000
Q ss_pred CchhhHhhccceeeeeeEEE-ECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCC
Q 040732 140 GLDDCVEEIDAHPVVGYALF-KDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENG 217 (541)
Q Consensus 140 gl~~~~~~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~ 217 (541)
|- ......+.+- ++|+...+.|.. .++.++..+|-.. ..+||-+..|. |+.+..++.
T Consensus 230 ~d--------pn~~k~lrfkqwsGkeRsiffep-------d~FfvspeDLp~~------~nGGvAvl~G~kvvkid~~d~ 288 (659)
T KOG1346|consen 230 GD--------PNSAKKLRFKQWSGKERSIFFEP-------DGFFVSPEDLPKA------VNGGVAVLRGRKVVKIDEEDK 288 (659)
T ss_pred CC--------CChhhheeecccCCccceeEecC-------CcceeChhHCccc------ccCceEEEeccceEEeecccC
Confidence 00 0011111111 123333333321 2344555544332 24689999997 999888776
Q ss_pred eEEEEEEEcCCCcEEEEEcCEEEEecCCCCc
Q 040732 218 IVKGVHYKTKDGQEHKSYAPLTIVCDGGFSN 248 (541)
Q Consensus 218 ~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S~ 248 (541)
.| ..+||.++. +|-..+|+|..-+
T Consensus 289 ~V-----~LnDG~~I~--YdkcLIATG~~Pk 312 (659)
T KOG1346|consen 289 KV-----ILNDGTTIG--YDKCLIATGVRPK 312 (659)
T ss_pred eE-----EecCCcEee--hhheeeecCcCcc
Confidence 43 367898755 8888889998643
No 409
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.79 E-value=0.27 Score=53.72 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
+-+|+|||.|..|-.+|..|.++|++|+++|++++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 56899999999999999999999999999999864
No 410
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=92.78 E-value=1.5 Score=44.85 Aligned_cols=119 Identities=21% Similarity=0.175 Sum_probs=74.6
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCc
Q 040732 62 ESVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGL 141 (541)
Q Consensus 62 ~~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl 141 (541)
....+..|||+|.|=+|.++.-.|-..-++|+||..+....-. .+-|..
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFT----------------------PLLpS~--------- 99 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFT----------------------PLLPST--------- 99 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEe----------------------eccCCc---------
Confidence 3456789999999999999998888888999999876522110 000000
Q ss_pred hhhHhhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcC-CCeEEEeCeEEEeeeeCCeEE
Q 040732 142 DDCVEEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASL-PNVRMEEGTVTSLFEENGIVK 220 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~v~v~~~~v~~l~~~~~~v~ 220 (541)
++ |. ++-..+.+-.+..++.. +++.+++...+++..+...|
T Consensus 100 ----------~v--------GT-------------------ve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V- 141 (491)
T KOG2495|consen 100 ----------TV--------GT-------------------VELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKV- 141 (491)
T ss_pred ----------cc--------cc-------------------eeehhhhhhHHHHhhccCCCceEEecccEeecccccEE-
Confidence 00 00 11112334444444332 36888888888877766544
Q ss_pred EEEEEcCCC--cEEEEEcCEEEEecCCCCcc
Q 040732 221 GVHYKTKDG--QEHKSYAPLTIVCDGGFSNL 249 (541)
Q Consensus 221 gV~v~~~~g--~~~~v~a~lvV~AdG~~S~v 249 (541)
.++..++++ .+..+.+|++|.|.|+....
T Consensus 142 ~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T 172 (491)
T KOG2495|consen 142 HCRSLTADSSDKEFVIGYDYLVIAVGAEPNT 172 (491)
T ss_pred EEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence 344444444 45667899999999998764
No 411
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.61 E-value=0.13 Score=51.17 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999875
No 412
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.61 E-value=0.13 Score=44.58 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 69 VIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 69 VvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
++|+|||+.+.++|..++..|++|+|+|.+++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998864
No 413
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=0.21 Score=49.85 Aligned_cols=39 Identities=28% Similarity=0.412 Sum_probs=36.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPD 103 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~ 103 (541)
..|||+|+|-|+.=+.++.+|+..|.+|+.+|+++...+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS 43 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence 479999999999999999999999999999999986655
No 414
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.47 E-value=0.18 Score=50.97 Aligned_cols=33 Identities=36% Similarity=0.414 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..|.|||+|..|.+.|..|++.|++|++++|++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999964
No 415
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.41 E-value=0.2 Score=46.80 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=30.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
....|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3458999999999999999999999999999864
No 416
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.25 E-value=0.14 Score=54.44 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=32.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..-.|+|+|+|++|+.++..+...|.+|.++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46789999999999999999999999999999875
No 417
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.18 E-value=0.19 Score=50.86 Aligned_cols=35 Identities=37% Similarity=0.574 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
....|+|||+|..|..+|..|++.|+ +++|+|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 44679999999999999999999998 899999986
No 418
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.11 E-value=0.16 Score=50.19 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+|.|||+|..|...|..++++|++|+++|+++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 59999999999999999999999999999875
No 419
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.00 E-value=0.22 Score=46.26 Aligned_cols=35 Identities=31% Similarity=0.564 Sum_probs=29.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
...+|+|||+|.++.-+|..|++.|.+|+++=|.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 45789999999999999999999999999998876
No 420
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.98 E-value=0.19 Score=52.14 Aligned_cols=35 Identities=40% Similarity=0.497 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..-.|+|+|+|+.|+.+|..++..|.+|+++|+++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 45689999999999999999999999999999876
No 421
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=91.97 E-value=4.3 Score=42.19 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCCC
Q 040732 190 QRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGFS 247 (541)
Q Consensus 190 ~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~S 247 (541)
+.|.+.+++. +.+++.++ |+++..+++++. +.+. .+|+. +.||.||.|.-...
T Consensus 201 ~~l~~~l~~~-g~~i~~~~~V~~i~~~~~~~~-~~~~-~~g~~--~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 201 EPARRWLDSR-GGEVRLGTRVRSIEANAGGIR-ALVL-SGGET--LPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHc-CCEEEcCCeeeEEEEcCCcce-EEEe-cCCcc--ccCCEEEEcCCHHH
Confidence 3356666565 67888887 999987776532 2232 35554 45999999876543
No 422
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.92 E-value=0.24 Score=47.67 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
....|+|||+|..|..+|..|++.|. +++|+|.+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 45789999999999999999999998 799999885
No 423
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.86 E-value=0.22 Score=49.95 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHhhCCC--cEEEEecCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGR--RVHVIERDMT 100 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~--~V~viEr~~~ 100 (541)
+|.|||+|..|.++|+.|++.|. .|.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 69999999999999999999994 7999998753
No 424
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.84 E-value=0.22 Score=49.89 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..|.|||+|..|..+|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 369999999999999999999999999999875
No 425
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.81 E-value=0.24 Score=50.22 Aligned_cols=35 Identities=34% Similarity=0.599 Sum_probs=32.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
....|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 45689999999999999999999999 899999975
No 426
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=91.71 E-value=0.22 Score=49.50 Aligned_cols=33 Identities=33% Similarity=0.491 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 359999999999999999999999999999875
No 427
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.66 E-value=0.28 Score=46.23 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
....|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 45689999999999999999999998 599999875
No 428
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.65 E-value=0.28 Score=45.88 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=32.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
.+..|+|||+|..|..+|..|++.|. +++|+|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 55789999999999999999999998 899999875
No 429
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.61 E-value=0.23 Score=50.24 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+|.|||+|..|.++|..|++.|.+|.+++|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999999999999864
No 430
>PRK08328 hypothetical protein; Provisional
Probab=91.43 E-value=0.28 Score=46.87 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=31.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
.+..|+|||+|..|+.+|..|++.|. +++|+|.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45689999999999999999999998 799998775
No 431
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.31 E-value=0.31 Score=44.32 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
.|+|||+|..|...|..|++.|+ +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 599999875
No 432
>PRK04148 hypothetical protein; Provisional
Probab=91.26 E-value=0.22 Score=42.84 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..|++||.| .|...|..|++.|.+|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 579999999 99999999999999999999886
No 433
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.26 E-value=0.3 Score=48.96 Aligned_cols=34 Identities=32% Similarity=0.509 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..+|.|||+|..|.++|..|++.|++|.+++|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3579999999999999999999999999999875
No 434
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.24 E-value=0.28 Score=48.46 Aligned_cols=34 Identities=44% Similarity=0.535 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
...|+|+|+|.+|.++|..|++.|. +|+|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4579999999999999999999998 799999874
No 435
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.24 E-value=0.34 Score=43.74 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=31.7
Q ss_pred CCCCcEEEECCCh-HHHHHHHHHhhCCCcEEEEecCC
Q 040732 64 VAGPDVIVVGAGV-AGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 64 ~~~~dVvIVGaG~-aGl~~A~~La~~G~~V~viEr~~ 99 (541)
-...+|+|||+|- +|..+|..|.++|.+|.++.|..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 3567999999996 69999999999999999999863
No 436
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.23 E-value=0.26 Score=50.17 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
.+|.|||+|..|...|..|+++|++|++++|.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 36999999999999999999999999999985
No 437
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.99 E-value=0.32 Score=46.91 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
....|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45789999999999999999999998 799999875
No 438
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.76 E-value=0.38 Score=42.12 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
.|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999998 799999885
No 439
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=90.69 E-value=0.17 Score=51.08 Aligned_cols=41 Identities=32% Similarity=0.445 Sum_probs=36.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCC
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPD 103 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~ 103 (541)
|...|||+|+|-|..=+.++..|+..|.+|+.+||++....
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~ 41 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGG 41 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCc
Confidence 34559999999999999999999999999999999986654
No 440
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=90.66 E-value=0.35 Score=46.41 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=31.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCC-----------CcEEEEecCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDG-----------RRVHVIERDM 99 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G-----------~~V~viEr~~ 99 (541)
..+..|+|||+|..|+.++-.|++.| .+++|+|.+.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 45679999999999999999999974 3899999875
No 441
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.58 E-value=0.37 Score=45.94 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
....|+|||+|..|...|..|++.|. +++|+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45689999999999999999999998 899999875
No 442
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.54 E-value=0.37 Score=45.86 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCc---EEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRR---VHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~---V~viEr~~ 99 (541)
..|+|+|||-+|.++|..|.+.|.+ +.|++|..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4799999999999999999999985 99999974
No 443
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.52 E-value=0.31 Score=51.01 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
..|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999998763
No 444
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.50 E-value=0.4 Score=47.95 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
..|.|||+|..|...|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 369999999999999999999887 899999854
No 445
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.48 E-value=0.45 Score=47.88 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=32.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDMT 100 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~~ 100 (541)
-....|.|||||-.|.++|+.++..|+ ++.++|.++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 344689999999999999999999996 8999998764
No 446
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=2.5 Score=39.41 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=66.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCCCCCCcCCcceeeeeccccccccccccccCchhhHHHHHCCchhhH
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMTQPDRIDGRRVHVIERDLMEPNRIVGELLQPGGYLKLVELGLDDCV 145 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~lgl~~~~ 145 (541)
..-.+|||||=+-+-=|..|.+.+.+|.|+-|+....
T Consensus 157 nk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fR------------------------------------------- 193 (322)
T KOG0404|consen 157 NKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFR------------------------------------------- 193 (322)
T ss_pred CCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhh-------------------------------------------
Confidence 4467899999999999999999999999998875221
Q ss_pred hhccceeeeeeEEEECCeeeeecCCCCCCCCCccceeecchHHHHHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEE
Q 040732 146 EEIDAHPVVGYALFKDGKITKTPYPLGNFQANVAGRSFHNGRFIQRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHY 224 (541)
Q Consensus 146 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v 224 (541)
-...+.+++.+.|+|++++++ +++..-+.....++++
T Consensus 194 ------------------------------------------As~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~i 231 (322)
T KOG0404|consen 194 ------------------------------------------ASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRI 231 (322)
T ss_pred ------------------------------------------HHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEE
Confidence 124456777788899999998 5555444444556666
Q ss_pred Ec-CCCcEEEEEcCEEEEecC
Q 040732 225 KT-KDGQEHKSYAPLTIVCDG 244 (541)
Q Consensus 225 ~~-~~g~~~~v~a~lvV~AdG 244 (541)
+. +.|++.++..+-+.-+-|
T Consensus 232 kn~~tge~~dl~v~GlFf~IG 252 (322)
T KOG0404|consen 232 KNVKTGEETDLPVSGLFFAIG 252 (322)
T ss_pred EecccCcccccccceeEEEec
Confidence 54 456655555666665555
No 447
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.16 E-value=0.37 Score=51.71 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.|.|||+|..|...|..|+++|++|+|+|+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999999975
No 448
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.05 E-value=0.32 Score=50.92 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
+|.|||.|-.|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999998763
No 449
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=89.99 E-value=0.52 Score=41.23 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=29.4
Q ss_pred CcEEEECC-ChHHHHHHHHHhhCCC--cEEEEecCC
Q 040732 67 PDVIVVGA-GVAGAALAHTLGTDGR--RVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGa-G~aGl~~A~~La~~G~--~V~viEr~~ 99 (541)
.+|.|||+ |..|.++|+.|...++ ++.++|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 36999999 9999999999998875 699999874
No 450
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.99 E-value=0.4 Score=48.28 Aligned_cols=32 Identities=41% Similarity=0.587 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+|.|||+|..|..+|..|++.|++|.++++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 451
>PRK08223 hypothetical protein; Validated
Probab=89.95 E-value=0.45 Score=46.71 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
....|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 45789999999999999999999998 799999875
No 452
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.83 E-value=0.38 Score=48.71 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
++|.|||.|-.||..|..|++.|++|+.+|.++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3689999999999999999999999999999863
No 453
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.79 E-value=0.4 Score=49.57 Aligned_cols=36 Identities=39% Similarity=0.458 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
....|+|+|.|+.|..+|..|+..|.+|+++|+++.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 456899999999999999999999999999998863
No 454
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.69 E-value=0.5 Score=45.07 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
.+..|+|||.|..|..+|..|++.|+ +++|+|.+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 45689999999999999999999998 899999875
No 455
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.68 E-value=0.45 Score=47.30 Aligned_cols=35 Identities=40% Similarity=0.543 Sum_probs=32.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
....|+|+|.|.+|..+|..|++.|.+|++++|++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35689999999999999999999999999999985
No 456
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=89.59 E-value=0.36 Score=51.73 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
..|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999999863
No 457
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.55 E-value=0.53 Score=46.67 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCc-EEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRR-VHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~-V~viEr~~ 99 (541)
...|+|+|||-+|.++|..|++.|.+ |.|+.|+.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 45799999999999999999999996 99999874
No 458
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.52 E-value=0.63 Score=51.40 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=32.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
+.+|+|+|.|..|-..|..|.++|++++++|+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~ 434 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD 434 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHH
Confidence 46899999999999999999999999999999863
No 459
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.43 E-value=0.39 Score=49.04 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
.|+|+|+||.||.++..++..|. +|+++|+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 69999999999999888888886 677777765
No 460
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.42 E-value=0.76 Score=50.60 Aligned_cols=34 Identities=38% Similarity=0.654 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+.+|+|+|.|..|-.+|..|.++|++|+++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~ 433 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDI 433 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCH
Confidence 4579999999999999999999999999999986
No 461
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.12 E-value=0.47 Score=46.79 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.|.|||.|..|.++|..|+++|++|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999864
No 462
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=89.03 E-value=0.6 Score=43.47 Aligned_cols=35 Identities=26% Similarity=0.579 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
.+..|+|||+|..|+..|..|++.|. +++|+|.+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 45789999999999999999999998 599999875
No 463
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=89.03 E-value=0.58 Score=43.51 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
....|+|||+|..|+..|..|++.|+ +++|+|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 45689999999999999999999998 699999875
No 464
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.99 E-value=0.49 Score=50.37 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
...|+|+|+|++|+.++..+...|.+|+++|+++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999875
No 465
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=88.96 E-value=0.25 Score=42.27 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=28.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERD 98 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~ 98 (541)
....+|.|||+|-.|.++|..|.+.|+.|.-+...
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 46789999999999999999999999998877643
No 466
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=88.78 E-value=2.4 Score=43.88 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=26.6
Q ss_pred EEEECCChHHHHHHHHHhhC--CCcEEEEecCCC
Q 040732 69 VIVVGAGVAGAALAHTLGTD--GRRVHVIERDMT 100 (541)
Q Consensus 69 VvIVGaG~aGl~~A~~La~~--G~~V~viEr~~~ 100 (541)
++|||+|++|+.+|..|.+. +.+++++++...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~ 34 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPK 34 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 58999999999999998875 457888887753
No 467
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=88.76 E-value=0.52 Score=44.43 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
....|+|||.|-.|..++-+|+|.|+ +++|||.+.
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence 34579999999999999999999998 899999986
No 468
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=88.73 E-value=0.72 Score=44.49 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=33.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
....++|+|||..+..+|..++..|++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 457999999999999999999999999999997754
No 469
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.73 E-value=0.42 Score=53.71 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
..|.|||||..|...|..++++|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998863
No 470
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=88.66 E-value=0.48 Score=44.02 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=32.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..-..|.|||||..|...|...+..|++|.++|++.
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 344679999999999999999999999999999875
No 471
>PRK06223 malate dehydrogenase; Reviewed
Probab=88.61 E-value=0.63 Score=46.58 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
.+|.|||+|..|..+|..++..|+ +|.++|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 479999999999999999999876 999999964
No 472
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=88.58 E-value=0.59 Score=46.78 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHhhCC--CcEEEEecCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDG--RRVHVIERDMT 100 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G--~~V~viEr~~~ 100 (541)
.|.|||+|-+|.++|+.|+..| .++.++|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5899999999999999999999 47999999753
No 473
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=88.56 E-value=0.47 Score=50.99 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
..|.|||+|..|...|..|+++|++|+++|++++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999999864
No 474
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=88.49 E-value=0.67 Score=44.28 Aligned_cols=32 Identities=41% Similarity=0.637 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
.|+|||+|..|+.++..|++.|+ +++|+|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 799999875
No 475
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=88.49 E-value=0.58 Score=41.65 Aligned_cols=36 Identities=42% Similarity=0.588 Sum_probs=28.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.....++|+|-|-.|..+|..|+..|.+|+|.|.+|
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 345679999999999999999999999999999986
No 476
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.47 E-value=0.47 Score=46.39 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=32.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 64 VAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 64 ~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
-.+.+|+|+|||.+|.-+|..+.-.|-+|+|+|.+.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 356789999999999999999999999999999884
No 477
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.45 E-value=0.77 Score=46.12 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC--cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR--RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~--~V~viEr~~ 99 (541)
....|.|||+|-.|.++|+.|+..|+ .+.++|...
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 44689999999999999999999988 799999864
No 478
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=88.44 E-value=0.45 Score=53.35 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=31.6
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
..|.|||||..|...|..++++|++|+++|.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999999863
No 479
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=88.44 E-value=0.58 Score=45.85 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
..|+|+|+|-++.+++++|++.|. +|.|+.|..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 379999999999999999999998 599999975
No 480
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.38 E-value=0.52 Score=49.98 Aligned_cols=33 Identities=39% Similarity=0.633 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
+|+|||+|..|..+|..|.++|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999999753
No 481
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=88.30 E-value=0.69 Score=47.51 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
....|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 45689999999999999999999998 899999875
No 482
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=88.26 E-value=0.63 Score=46.06 Aligned_cols=35 Identities=37% Similarity=0.567 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
....|+|+|+|.+|.++|..|+..|.+|++++|.+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999999875
No 483
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.22 E-value=0.7 Score=41.47 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+|-|||-|..|...|..|.++|++|.++||.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 68999999999999999999999999999875
No 484
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.19 E-value=0.66 Score=43.90 Aligned_cols=32 Identities=31% Similarity=0.579 Sum_probs=29.3
Q ss_pred cEEEEC-CChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVG-AGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVG-aG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
+|.||| +|..|.++|..|++.|.+|.+++|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999998865
No 485
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.17 E-value=0.67 Score=49.09 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=33.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 63 SVAGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 63 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
|..+--|+|||.|.+|+++|..|.+.|.+|.+.|...
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 4456789999999999999999999999999999764
No 486
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=88.09 E-value=0.6 Score=49.60 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
..-+|+|||||..|+-+|..|++.|. +|+++++..
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 34689999999999999999999998 899999864
No 487
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.08 E-value=0.56 Score=49.64 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
..|+|+|+|.+|+++|..|++.|.+|.+.|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 369999999999999999999999999999764
No 488
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.06 E-value=0.92 Score=42.29 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=30.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
...|+|+|.|-.|..+|..|.+.|.+|+++|+++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3579999999999999999999999999998763
No 489
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=88.06 E-value=0.72 Score=45.50 Aligned_cols=34 Identities=38% Similarity=0.477 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
...|+|+|||-+|.++|++|++.|. ++.|+.|..
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 4579999999999999999999997 689998864
No 490
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=87.99 E-value=0.61 Score=46.52 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=28.6
Q ss_pred EEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 69 VIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 69 VvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
|.|||+|-.|..+|..|+.+|+ +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999998887 999999985
No 491
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=87.96 E-value=1.1 Score=35.28 Aligned_cols=32 Identities=38% Similarity=0.744 Sum_probs=29.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhC-CCcEEEEec
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTD-GRRVHVIER 97 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~-G~~V~viEr 97 (541)
..+++|+|+|.+|..+|..|.+. +.+|.+++|
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34799999999999999999998 678999998
No 492
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=87.95 E-value=0.79 Score=42.41 Aligned_cols=34 Identities=35% Similarity=0.643 Sum_probs=30.2
Q ss_pred CCcEEEECC-ChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 66 GPDVIVVGA-GVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGa-G~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
...++|+|| |..|..+|..|+++|.+|.++.|+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 357999997 9999999999999999999998763
No 493
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.95 E-value=0.7 Score=47.26 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-cEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGR-RVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~-~V~viEr~~ 99 (541)
....|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 45689999999999999999999998 799999885
No 494
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=87.88 E-value=1.6 Score=44.43 Aligned_cols=51 Identities=25% Similarity=0.194 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCCeEEEeCe-EEEeeeeCCeEEEEEEEcCCCcEEEEEcCEEEEecCCC
Q 040732 190 QRMREKAASLPNVRMEEGT-VTSLFEENGIVKGVHYKTKDGQEHKSYAPLTIVCDGGF 246 (541)
Q Consensus 190 ~~L~~~~~~~~~v~v~~~~-v~~l~~~~~~v~gV~v~~~~g~~~~v~a~lvV~AdG~~ 246 (541)
++-.+.+++. ||.++-+. |.++....++ +.++.+||.+.. .|+||+|.|.-
T Consensus 397 ~wt~ekir~~-GV~V~pna~v~sv~~~~~n---l~lkL~dG~~l~--tD~vVvavG~e 448 (659)
T KOG1346|consen 397 QWTIEKIRKG-GVDVRPNAKVESVRKCCKN---LVLKLSDGSELR--TDLVVVAVGEE 448 (659)
T ss_pred HHHHHHHHhc-Cceeccchhhhhhhhhccc---eEEEecCCCeee--eeeEEEEecCC
Confidence 3334444443 78887775 6666655543 556788998754 99999999974
No 495
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.84 E-value=0.72 Score=48.04 Aligned_cols=36 Identities=42% Similarity=0.447 Sum_probs=32.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
....|+|+|.|..|..+|..|+..|.+|+++|+++.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 456899999999999999999999999999998763
No 496
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.83 E-value=0.6 Score=46.65 Aligned_cols=32 Identities=28% Similarity=0.591 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 68 DVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 68 dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
.|.|+|+|..|+..|+.|++.|..|+++=|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 68999999999999999999998888887765
No 497
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.75 E-value=0.78 Score=48.57 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCcEEEEecCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDGRRVHVIERDMT 100 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~~ 100 (541)
..|+|+|+|.+|+++|..|+++|.+|++.|..+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4799999999999999999999999999997653
No 498
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.69 E-value=0.72 Score=47.23 Aligned_cols=34 Identities=32% Similarity=0.643 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHhhCC-CcEEEEecCCC
Q 040732 67 PDVIVVGAGVAGAALAHTLGTDG-RRVHVIERDMT 100 (541)
Q Consensus 67 ~dVvIVGaG~aGl~~A~~La~~G-~~V~viEr~~~ 100 (541)
.+|+|+|+|-.|..+|..|+++| .+|+|.+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 47999999999999999999999 89999999853
No 499
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.64 E-value=0.88 Score=45.58 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC--cEEEEecCC
Q 040732 66 GPDVIVVGAGVAGAALAHTLGTDGR--RVHVIERDM 99 (541)
Q Consensus 66 ~~dVvIVGaG~aGl~~A~~La~~G~--~V~viEr~~ 99 (541)
+..|.|||+|-.|.++|+.|+..|+ ++.|+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4589999999999999999998886 699999865
No 500
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=87.58 E-value=2.1 Score=46.24 Aligned_cols=35 Identities=34% Similarity=0.495 Sum_probs=30.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCcEEEEecCC
Q 040732 65 AGPDVIVVGAGVAGAALAHTLGTDGRRVHVIERDM 99 (541)
Q Consensus 65 ~~~dVvIVGaG~aGl~~A~~La~~G~~V~viEr~~ 99 (541)
...+|+|||+|.+|+=.|..|++...+|.+.=|..
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 45689999999999999999999999999988865
Done!