BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040733
(643 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide
Chlorimuron Ethyl
pdb|1YHY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Metsulfuron Methyl
pdb|1YHZ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Chlorsulfuron
pdb|1YI0|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Sulfometuron Methyl
pdb|1YI1|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Tribenuron Methyl
pdb|1Z8N|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With An Imidazolinone Herbicide,
Imazaquin
Length = 590
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/582 (66%), Positives = 473/582 (81%), Gaps = 2/582 (0%)
Query: 60 FSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQG 118
F SRFAPD+PRKGADI+VEALERQGV TVFAYPGGAS+EIHQ+LTRS+ IR++LPRHEQG
Sbjct: 2 FISRFAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQG 61
Query: 119 GIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAF 178
G+FAAEGYARSSG PG+C+ +SGPG TN+++GL DA DS+P++AITGQV ++++GTDAF
Sbjct: 62 GVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF 121
Query: 179 QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPN 238
QE P+VEVTR +TKHNYLV+DV+DIPRII+EAFF+ATSGRPGPVL+D+P D+Q +LA+PN
Sbjct: 122 QETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLAIPN 181
Query: 239 WNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGI 298
W Q +LP +S +PK P++ L Q ++LI ESK PVL VGGGCLNSS+EL +FV LTGI
Sbjct: 182 WEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTGI 241
Query: 299 PVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA 358
PV T MGLG +P DEL L M+GM GTVYANYAV DLLLA GVRF++R+T KLE FA
Sbjct: 242 PVASTLMGLGSYPXDDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFA 301
Query: 359 TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHE 418
+RAKIVHIDIDS EIGK K P VS+C D KL MN +LE++ DF WR EL+
Sbjct: 302 SRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNV 361
Query: 419 QKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
QK+K+P S+KTFGE IPPQYAI++L+ELTD + IISTGVGQHQMWA QFY YK+ RQ L
Sbjct: 362 QKQKFPLSFKTFGEAIPPQYAIKVLDELTDG-KAIISTGVGQHQMWAAQFYNYKKPRQWL 420
Query: 479 TSSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
+S G G+MGFGL IVVDIDGDGSFIMN+QELA I+ EN+PVK+LL+NN
Sbjct: 421 SSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNN 480
Query: 539 QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
Q+LGM +++EDR+++ANRA++FLGDP ++ EIFP+ML FA ACGIPAARVTKK D+R AI
Sbjct: 481 QHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAI 540
Query: 599 QLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
Q ML+TPGPYLLDV+ +QEHV+PMIP +F D I E DGR
Sbjct: 541 QTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGR 582
>pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron
pdb|3EA4|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron-Ester
Length = 584
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/582 (66%), Positives = 473/582 (81%), Gaps = 2/582 (0%)
Query: 60 FSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQG 118
F SRFAPD+PRKGADI+VEALERQGV TVFAYPGGAS+EIHQ+LTRS+ IR++LPRHEQG
Sbjct: 1 FISRFAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQG 60
Query: 119 GIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAF 178
G+FAAEGYARSSG PG+C+ +SGPG TN+++GL DA DS+P++AITGQV ++++GTDAF
Sbjct: 61 GVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF 120
Query: 179 QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPN 238
QE P+VEVTR +TKHNYLV+DV+DIPRII+EAFF+ATSGRPGPVL+D+P D+Q +LA+PN
Sbjct: 121 QETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLAIPN 180
Query: 239 WNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGI 298
W Q +LP +S +PK P++ L Q ++LI ESK PVL VGGGCLNSS+EL +FV LTGI
Sbjct: 181 WEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTGI 240
Query: 299 PVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA 358
PV T MGLG +P DEL L M+GM GTVYANYAV DLLLA GVRF++R+T KLE FA
Sbjct: 241 PVATTLMGLGSYPXDDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFA 300
Query: 359 TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHE 418
+RAKIVHIDIDS EIGK K P VS+C D KL MN +LE++ DF WR EL+
Sbjct: 301 SRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNV 360
Query: 419 QKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
QK+K+P S+KTFGE IPPQYAI++L+ELTD + IISTGVGQHQMWA QFY YK+ RQ L
Sbjct: 361 QKQKFPLSFKTFGEAIPPQYAIKVLDELTDG-KAIISTGVGQHQMWAAQFYNYKKPRQWL 419
Query: 479 TSSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
+S G G+MGFGL IVVDIDGDGSFIMN+QELA I+ EN+PVK+LL+NN
Sbjct: 420 SSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNN 479
Query: 539 QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
Q+LGM +++EDR+++ANRA++FLGDP ++ EIFP+ML FA ACGIPAARVTKK D+R AI
Sbjct: 480 QHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAI 539
Query: 599 QLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
Q ML+TPGPYLLDV+ +QEHV+PMIP +F D I E DGR
Sbjct: 540 QTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGR 581
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 222/576 (38%), Positives = 328/576 (56%), Gaps = 37/576 (6%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS 130
G I E + RQ V TVF YPGGA + ++ ++ S+ +LP+HEQG AEGYAR+S
Sbjct: 84 GGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARAS 143
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G PGV LV+SGPG TN++T + DA++D IP++ TGQV +GTDAFQE VV ++R
Sbjct: 144 GKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSC 203
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPS-CI 249
TK N +V V+++P I EAF IATSGRPGPVL+D+P DV + LPS +
Sbjct: 204 TKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAILRNPIPTKTTLPSNAL 263
Query: 250 SSL-PKEPDELALRQTLK---LIVESKNPVLCVGGGCLNSSEE---LRKFVGLTGIPVTC 302
+ L + DE ++ K LI +K PVL VG G LN ++ L++ IPVT
Sbjct: 264 NQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTT 323
Query: 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT--- 359
T GLG F D L M+GM G AN AV DL++A G RF++R+T + FA
Sbjct: 324 TLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEAR 383
Query: 360 ------RAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNR-MNMILESKGVGFMFDFSAW 412
R I+H ++ I KV +++ DA + M+ I K + S W
Sbjct: 384 RAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFPVK------ERSEW 437
Query: 413 REELHEQKKKYPFSY--KTFGEEIPPQYAIQILNELTDD--EETIISTGVGQHQMWAIQF 468
++++ KK+YP++Y +T G +I PQ I+ L+++ +D I++TGVGQHQMWA Q
Sbjct: 438 FAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQH 497
Query: 469 YMYKRARQLLTSSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAEN 528
+ ++ +TS G G+MG+GL +V+DIDGD SF M L EL++
Sbjct: 498 WTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQAG 557
Query: 529 IPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV 588
PVKIL++NN+ GM +++ ++E +++ ++ PD +K AEA G+ RV
Sbjct: 558 TPVKILILNNEEQGMVTQWQSLFYEHRYSHTH--------QLNPDFIKLAEAMGLKGLRV 609
Query: 589 TKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMI 624
K++++ A ++ + T GP LL+V V + V+PM+
Sbjct: 610 KKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMV 645
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 222/576 (38%), Positives = 328/576 (56%), Gaps = 37/576 (6%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS 130
G I E + RQ V TVF YPGGA + ++ ++ S+ +LP+HEQG AEGYAR+S
Sbjct: 37 GGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARAS 96
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G PGV LV+SGPG TN++T + DA++D IP++ TGQV +GTDAFQE VV ++R
Sbjct: 97 GKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSC 156
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPS-CI 249
TK N +V V+++P I EAF IATSGRPGPVL+D+P DV + LPS +
Sbjct: 157 TKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAILRNPIPTKTTLPSNAL 216
Query: 250 SSL-PKEPDELALRQTLK---LIVESKNPVLCVGGGCLNSSEE---LRKFVGLTGIPVTC 302
+ L + DE ++ K LI +K PVL VG G LN ++ L++ IPVT
Sbjct: 217 NQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTT 276
Query: 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT--- 359
T GLG F D L M+GM G AN AV DL++A G RF++R+T + FA
Sbjct: 277 TLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEAR 336
Query: 360 ------RAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNR-MNMILESKGVGFMFDFSAW 412
R I+H ++ I KV +++ DA + M+ I K + S W
Sbjct: 337 RAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFPVK------ERSEW 390
Query: 413 REELHEQKKKYPFSY--KTFGEEIPPQYAIQILNELTDD--EETIISTGVGQHQMWAIQF 468
++++ KK+YP++Y +T G +I PQ I+ L+++ +D I++TGVGQHQMWA Q
Sbjct: 391 FAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQH 450
Query: 469 YMYKRARQLLTSSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAEN 528
+ ++ +TS G G+MG+GL +V+DIDGD SF M L EL++
Sbjct: 451 WTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQAG 510
Query: 529 IPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV 588
PVKIL++NN+ GM +++ ++E +++ ++ PD +K AEA G+ RV
Sbjct: 511 TPVKILILNNEEQGMVTQWQSLFYEHRYSHTH--------QLNPDFIKLAEAMGLKGLRV 562
Query: 589 TKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMI 624
K++++ A ++ + T GP LL+V V + V+PM+
Sbjct: 563 KKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMV 598
>pdb|2PAN|A Chain A, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|B Chain B, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|C Chain C, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|D Chain D, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|E Chain E, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|F Chain F, Crystal Structure Of E. Coli Glyoxylate Carboligase
Length = 616
Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 175/568 (30%), Positives = 275/568 (48%), Gaps = 25/568 (4%)
Query: 61 SSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN--IRSILPRHEQG 118
S A + D LE++G+TT F PG A+I S R + IR IL RH +G
Sbjct: 18 GSHXASXAKXRAVDAAXYVLEKEGITTAFGVPG-AAINPFYSAXRKHGGIRHILARHVEG 76
Query: 119 GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA 177
AEGY R++ G GVCL +SGP T+ +T L A +DSIPIL ITGQ + L +
Sbjct: 77 ASHXAEGYTRATAGNIGVCLGTSGPAGTDXITALYSASADSIPILCITGQAPRARLHKED 136
Query: 178 FQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL-ELAV 236
FQ + + + + ++K V + +PR++++AF + SGRPGPVL+D+P DVQ+ E+
Sbjct: 137 FQAVDIEAIAKPVSKXAVTVREAALVPRVLQQAFHLXRSGRPGPVLVDLPFDVQVAEIEF 196
Query: 237 -PNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEE--LRKFV 293
P+ +P + +S + + + ++ +++++ PV+ GGG +N+ L++F
Sbjct: 197 DPDXYEPLPVYKPAASRXQ------IEKAVEXLIQAERPVIVAGGGVINADAAALLQQFA 250
Query: 294 GLTGIPVTCTTMGLGLFPCTDELCLRMVGM-FGTVYANYAVNECDLLLAAGVRFNERMTS 352
LT +PV T G G P EL VG+ Y N + D + G RF R T
Sbjct: 251 ELTSVPVIPTLXGWGCIPDDHELXAGXVGLQTAHRYGNATLLASDXVFGIGNRFANRHTG 310
Query: 353 KLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRM-NMILESKGVGFMFDFSA 411
+E + KIVHIDI+ +IG+V PD+ I +DAK + + E + G +
Sbjct: 311 SVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEXQKAGRLPCRKE 370
Query: 412 WREELHEQKKKYPFSYKTFGEEIP--PQYAIQILNELTDDEETIISTGVGQHQMWAIQFY 469
W + Q++K KT + +P PQ + N+ + ++T +G Q+ A Q
Sbjct: 371 WVADC--QQRKRTLLRKTHFDNVPVKPQRVYEEXNKAFGRDVCYVTT-IGLSQIAAAQXL 427
Query: 470 MYKRARQLLTSSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENI 529
+ R + G +G+ + VV I GD F ++ELA NI
Sbjct: 428 HVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNI 487
Query: 530 PVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFP---DMLKFAEACGIPAA 586
P +L+NN YLG+ + R F+ + + + SE+ D +K AE G A
Sbjct: 488 PYIHVLVNNAYLGL-IRQSQRAFDXDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAI 546
Query: 587 RVTKKKDVRAAIQLMLETPGPYLLDVMV 614
RV K +D+ A + Y + V+V
Sbjct: 547 RVFKPEDIAPAFEQAKALXAQYRVPVVV 574
>pdb|3EYA|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|C Chain C, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|D Chain D, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|E Chain E, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|F Chain F, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|G Chain G, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|H Chain H, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|I Chain I, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|J Chain J, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|K Chain K, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|L Chain L, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 549
Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 156/555 (28%), Positives = 245/555 (44%), Gaps = 30/555 (5%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYARSSG 131
A I + LE GV ++ G + + SL R I + RHE+ FAA A+ SG
Sbjct: 6 AAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSG 65
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
VC S GPG +++ GL D + + +P+LAI + +G+ FQE E+ R +
Sbjct: 66 ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECS 125
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL----ELAVPNWNQPCKLPS 247
+ LV + IP+++ A A R G ++ +P DV L E A +W P
Sbjct: 126 HYCELVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDVALKPAPEGATMHWYHA---PQ 181
Query: 248 CISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGL 307
+ + P+E LR+ +L+ S N L G GC + +EL +F G P+ G
Sbjct: 182 PVVT----PEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHALRGK 237
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
+ + M G+ G + + D L+ G +F R + T AKI+ ID
Sbjct: 238 EHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAF-----YPTDAKIIQID 292
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
I+ IG D+++ D K + ++E K D + E+ + +K
Sbjct: 293 INPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDKAL--EDYRDARKGLDDLA 350
Query: 428 KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMG 487
K + I PQY Q ++ D + I + VG +WA ++ R+LL S GSM
Sbjct: 351 KPSEKAIHPQYLAQQISHFAAD-DAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMA 409
Query: 488 FGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEY 547
+ VV + GDG F M + + ++ +PVKI++ NN LG V
Sbjct: 410 NAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGF-VAM 468
Query: 548 EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGP 607
E +A +L D + + + AEACGI RV K +V A+Q GP
Sbjct: 469 E------MKAGGYLTDGTELHDT--NFARIAEACGITGIRVEKASEVDEALQRAFSIDGP 520
Query: 608 YLLDVMVSYQEHVVP 622
L+DV+V+ +E +P
Sbjct: 521 VLVDVVVAKEELAIP 535
>pdb|3EY9|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EY9|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 572
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 156/555 (28%), Positives = 245/555 (44%), Gaps = 30/555 (5%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYARSSG 131
A I + LE GV ++ G + + SL R I + RHE+ FAA A+ SG
Sbjct: 6 AAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSG 65
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
VC S GPG +++ GL D + + +P+LAI + +G+ FQE E+ R +
Sbjct: 66 ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECS 125
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL----ELAVPNWNQPCKLPS 247
+ LV + IP+++ A A R G ++ +P DV L E A +W P
Sbjct: 126 HYCELVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDVALKPAPEGATMHWYHA---PQ 181
Query: 248 CISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGL 307
+ + P+E LR+ +L+ S N L G GC + +EL +F G P+ G
Sbjct: 182 PVVT----PEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHALRGK 237
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
+ + M G+ G + + D L+ G +F R + T AKI+ ID
Sbjct: 238 EHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAF-----YPTDAKIIQID 292
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
I+ IG D+++ D K + ++E K D + E+ + +K
Sbjct: 293 INPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDKAL--EDYRDARKGLDDLA 350
Query: 428 KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMG 487
K + I PQY Q ++ D + I + VG +WA ++ R+LL S GSM
Sbjct: 351 KPSEKAIHPQYLAQQISHFAAD-DAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMA 409
Query: 488 FGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEY 547
+ VV + GDG F M + + ++ +PVKI++ NN LG V
Sbjct: 410 NAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGF-VAM 468
Query: 548 EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGP 607
E +A +L D + + + AEACGI RV K +V A+Q GP
Sbjct: 469 E------MKAGGYLTDGTELHDT--NFARIAEACGITGIRVEKASEVDEALQRAFSIDGP 520
Query: 608 YLLDVMVSYQEHVVP 622
L+DV+V+ +E +P
Sbjct: 521 VLVDVVVAKEELAIP 535
>pdb|1OZG|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZG|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZH|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|C Chain C, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|D Chain D, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZF|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
pdb|1OZF|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
Length = 566
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 143/561 (25%), Positives = 252/561 (44%), Gaps = 40/561 (7%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
GAD++V LE QGV VF PG ++ SL S+IR I RHE F A R +G
Sbjct: 13 GADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITG 72
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
GV LV+SGPG +N++TG+ A S+ P++A+ G V + Q + V + +T
Sbjct: 73 KAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVT 132
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISS 251
K+ V D + ++ AF A GRPG + +P DV ++ V P S
Sbjct: 133 KYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDV-VDGPVSGKVLPA---SGAPQ 188
Query: 252 LPKEPDELALRQTLKLIVESKNPVLCVG--GGCLNSSEELRKFVGLTGIPVTCTTMGLGL 309
+ PD+ A+ Q KLI ++KNP+ +G +S+ LR+ + + IPVT T G
Sbjct: 189 MGAAPDD-AIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGA 247
Query: 310 FPCTD-ELCLRMVGMFGTVYANYAVNECDLLLAAG---VRFNERMTSKLEDFATRAKIVH 365
+ VG+F + + DL++ G V + M + + A +VH
Sbjct: 248 VNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAMWN-----SGNATLVH 302
Query: 366 IDIDSNEIGKVKLPDVSICADAKLVFNRM------NMILESKGVGFMFDFSAWREELHEQ 419
ID+ + PDV + D N++ ++L + + D RE L +
Sbjct: 303 IDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHRLVLSPQAAEILRDRQHQRELLDRR 362
Query: 420 KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLT 479
+ F + P ++ + ++ + + T ++ +G +W ++ RARQ++
Sbjct: 363 GAQ----LNQFA--LHPLRIVRAMQDIVNSDVT-LTVDMGSFHIWIARYLYTFRARQVMI 415
Query: 480 SSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQEL-AAIKAENIPVKILLINN 538
S+G +MG L VV + GDG F+ + EL A++ + + ++ ++N
Sbjct: 416 SNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDN 475
Query: 539 QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
Y + ++ E +Y R + P+ D +AE+ G V + + +
Sbjct: 476 GYNMVAIQEEKKY---QRLSGVEFGPM-------DFKAYAESFGAKGFAVESAEALEPTL 525
Query: 599 QLMLETPGPYLLDVMVSYQEH 619
+ ++ GP ++ + V Y+++
Sbjct: 526 RAAMDVDGPAVVAIPVDYRDN 546
>pdb|2PGN|A Chain A, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGN|B Chain B, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGO|A Chain A, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
pdb|2PGO|B Chain B, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
Length = 589
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 145/565 (25%), Positives = 238/565 (42%), Gaps = 41/565 (7%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNI--RSILPRHEQGGIFAAEGYA 127
++GAD+IVEALE G V + G S + + ++S++ R I P E GG + GY
Sbjct: 4 KRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYN 63
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLG-TDAFQEIPVVEV 186
G + + +A + IP + I +L G ++A Q++P
Sbjct: 64 YVKDRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQSF 123
Query: 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLP 246
T + + V +D + I EAF +A GP +DIP D L + +P
Sbjct: 124 TP-IARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD----LTADQIDDKALVP 178
Query: 247 SCIS---SLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVT 301
+ S+ P+E +R+ +V +KNPV+ GGG S SE L K + G+PV
Sbjct: 179 RGATRAKSVLHAPNE-DVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEMVGVPVV 237
Query: 302 CTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRA 361
T+ G G+FP T L + G G AN + D +L G R ++ + + + T+
Sbjct: 238 TTSTGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSDWGIA--QGYITKM 295
Query: 362 -KIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHE-- 418
K VH+D D +G P +S+ ADAK ++ +L F A R + E
Sbjct: 296 PKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLPGTS-----GFKAVRYQERENF 350
Query: 419 -QKKKYPFSYKTFGEEIP-----PQYAIQILNELTDDE--ETIISTGVGQHQMWAIQFYM 470
Q ++ ++ + E P + + E+ + E II T +G H + +
Sbjct: 351 RQATEFRAAWDGWVREQESGDGMPASMFRAMAEVRKVQRPEDIIVTDIGNHTLPMFGGAI 410
Query: 471 YKRARQLLTSSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIP 530
+R R+L+TS G +G G V GDG+ + E +P
Sbjct: 411 LQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVEHKLP 470
Query: 531 VKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK 590
V ++ N+ G N + F N F+ PD + A+A G V +
Sbjct: 471 VITMVFTNESYGANWTLMNHQFGQNNWTEFMN---------PDWVGIAKAFGAYGESVRE 521
Query: 591 KKDVRAAIQLMLETPGPYLLDVMVS 615
D+ A+Q +++ P L+++ VS
Sbjct: 522 TGDIAGALQRAIDSGKPALIEIPVS 546
>pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w
pdb|2EZ4|B Chain B, Pyruvate Oxidase Variant F479w
pdb|2EZ8|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ8|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ9|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZ9|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZT|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZT|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZU|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
pdb|2EZU|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
Length = 603
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 137/521 (26%), Positives = 233/521 (44%), Gaps = 25/521 (4%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLT--RSNIRSILPRHEQGGIFAAEGYARSSGTP 133
+++ LE GV ++ PGG+ I +L+ R I I RHE+ G AA A+ +G
Sbjct: 17 VIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKI 76
Query: 134 GVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKH 193
GVC S+GPG T++M GL DA D +P+LA+ GQ + D FQE+ + + +
Sbjct: 77 GVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADY 136
Query: 194 NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLP 253
N ++ +P +I EA A + + G ++ IPVD+ + +P + S + L
Sbjct: 137 NVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQ-QIPAEDWYASANSYQTPLL 194
Query: 254 KEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCT 313
EPD A+ + + ++ ++ P++ G G + +EL + IP+ T G+
Sbjct: 195 PEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADR 254
Query: 314 DELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEI 373
L AN A+ + D++L G + SK F + IDID ++
Sbjct: 255 YPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKA--FKNTRYFLQIDIDPAKL 312
Query: 374 GKVKLPDVSICADA-KLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGE 432
GK D+++ ADA K + + + E + + W+ L K + +
Sbjct: 313 GKRHKTDIAVLADAQKTLAAILAQVSERESTPW------WQANLANVKNWRAYLASLEDK 366
Query: 433 EIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGL 490
+ P A Q+L + + + I S VG + A + + + +TS+ F +MG G+
Sbjct: 367 QEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGI 426
Query: 491 XXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPV-KILLINNQYLGMNVEYED 549
V ++ GDG M +Q+LA ++PV ++ N QY + E ED
Sbjct: 427 PGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGWIKDEQED 486
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK 590
N F+G + ++I D K A+ + A RV K
Sbjct: 487 -----TNQNDFIG--VEFNDI--DFSKIADGVHMQAFRVNK 518
>pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POW|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 137/521 (26%), Positives = 233/521 (44%), Gaps = 25/521 (4%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLT--RSNIRSILPRHEQGGIFAAEGYARSSGTP 133
+++ LE GV ++ PGG+ I +L+ R I I RHE+ G AA A+ +G
Sbjct: 9 VIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKI 68
Query: 134 GVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKH 193
GVC S+GPG T++M GL DA D +P+LA+ GQ + D FQE+ + + +
Sbjct: 69 GVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADY 128
Query: 194 NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLP 253
N ++ +P +I EA A + + G ++ IPVD+ + +P + S + L
Sbjct: 129 NVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQ-QIPAEDWYASANSYQTPLL 186
Query: 254 KEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCT 313
EPD A+ + + ++ ++ P++ G G + +EL + IP+ T G+
Sbjct: 187 PEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADR 246
Query: 314 DELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEI 373
L AN A+ + D++L G + SK F + IDID ++
Sbjct: 247 YPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKA--FKNTRYFLQIDIDPAKL 304
Query: 374 GKVKLPDVSICADA-KLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGE 432
GK D+++ ADA K + + + E + + W+ L K + +
Sbjct: 305 GKRHKTDIAVLADAQKTLAAILAQVSERESTPW------WQANLANVKNWRAYLASLEDK 358
Query: 433 EIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGL 490
+ P A Q+L + + + I S VG + A + + + +TS+ F +MG G+
Sbjct: 359 QEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGI 418
Query: 491 XXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPV-KILLINNQYLGMNVEYED 549
V ++ GDG M +Q+LA ++PV ++ N QY + E ED
Sbjct: 419 PGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQED 478
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK 590
N F+G + ++I D K A+ + A RV K
Sbjct: 479 -----TNQNDFIG--VEFNDI--DFSKIADGVHMQAFRVNK 510
>pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEE|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEG|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
pdb|4FEG|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
Length = 603
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 137/521 (26%), Positives = 233/521 (44%), Gaps = 25/521 (4%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLT--RSNIRSILPRHEQGGIFAAEGYARSSGTP 133
+++ LE GV ++ PGG+ I +L+ R I I RHE+ G AA A+ +G
Sbjct: 17 VIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKI 76
Query: 134 GVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKH 193
GVC S+GPG T++M GL DA D +P+LA+ GQ + D FQE+ + + +
Sbjct: 77 GVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADY 136
Query: 194 NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLP 253
N ++ +P +I EA A + + G ++ IPVD+ + +P + S + L
Sbjct: 137 NVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQ-QIPAEDWYASANSYQTPLL 194
Query: 254 KEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCT 313
EPD A+ + + ++ ++ P++ G G + +EL + IP+ T G+
Sbjct: 195 PEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADR 254
Query: 314 DELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEI 373
L AN A+ + D++L G + SK F + IDID ++
Sbjct: 255 YPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKA--FKNTRYFLQIDIDPAKL 312
Query: 374 GKVKLPDVSICADA-KLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGE 432
GK D+++ ADA K + + + E + + W+ L K + +
Sbjct: 313 GKRHKTDIAVLADAQKTLAAILAQVSERESTPW------WQANLANVKNWRAYLASLEDK 366
Query: 433 EIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGL 490
+ P A Q+L + + + I S VG + A + + + +TS+ F +MG G+
Sbjct: 367 QEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGI 426
Query: 491 XXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPV-KILLINNQYLGMNVEYED 549
V ++ GDG M +Q+LA ++PV ++ N QY + E ED
Sbjct: 427 PGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQED 486
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK 590
N F+G + ++I D K A+ + A RV K
Sbjct: 487 -----TNQNDFIG--VEFNDI--DFSKIADGVHMQAFRVNK 518
>pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|B Chain B, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|C Chain C, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|D Chain D, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
Length = 603
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 137/521 (26%), Positives = 233/521 (44%), Gaps = 25/521 (4%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLT--RSNIRSILPRHEQGGIFAAEGYARSSGTP 133
+++ LE GV ++ PGG+ I +L+ R I I RHE+ G AA A+ +G
Sbjct: 17 VIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKI 76
Query: 134 GVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKH 193
GVC S+GPG T++M GL DA D +P+LA+ GQ + D FQE+ + + +
Sbjct: 77 GVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADY 136
Query: 194 NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLP 253
N ++ +P +I EA A + + G ++ IPVD+ + +P + S + L
Sbjct: 137 NVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQ-QIPAEDWYASANSYQTPLL 194
Query: 254 KEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCT 313
EPD A+ + + ++ ++ P++ G G + +EL + IP+ T G+
Sbjct: 195 PEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADR 254
Query: 314 DELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEI 373
L AN A+ + D++L G + SK F + IDID ++
Sbjct: 255 YPAYLGSANRAAQKPANEALAQADVVLFVGNNYPFAEVSKA--FKNTRYFLQIDIDPAKL 312
Query: 374 GKVKLPDVSICADA-KLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGE 432
GK D+++ ADA K + + + E + + W+ L K + +
Sbjct: 313 GKRHKTDIAVLADAQKTLAAILAQVSERESTPW------WQANLANVKNWRAYLASLEDK 366
Query: 433 EIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGL 490
+ P A Q+L + + + I S VG + A + + + +TS+ F +MG G+
Sbjct: 367 QEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGI 426
Query: 491 XXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPV-KILLINNQYLGMNVEYED 549
V ++ GDG M +Q+LA ++PV ++ N QY + E ED
Sbjct: 427 PGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQED 486
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK 590
N F+G + ++I D K A+ + A RV K
Sbjct: 487 -----TNQNDFIG--VEFNDI--DFSKIADGVHMQAFRVNK 518
>pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POX|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 135/522 (25%), Positives = 233/522 (44%), Gaps = 27/522 (5%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLT--RSNIRSILPRHEQGGIFAAEGYARSSGTP 133
+++ LE GV ++ PGG+ I +L+ R I I RHE+ G AA A+ +G
Sbjct: 9 VIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKI 68
Query: 134 GVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKH 193
GVC S+GPG T++M GL DA D +P+LA+ GQ + D FQE+ + + +
Sbjct: 69 GVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADY 128
Query: 194 NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL-ELAVPNWNQPCKLPSCISSL 252
N ++ +P +I EA A + + G ++ IPVD+ +++ +W + + L
Sbjct: 129 NVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQISAEDWYASAN--NYQTPL 185
Query: 253 PKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPC 312
EPD A+ + + ++ ++ P++ G G + +EL + IP+ T G+
Sbjct: 186 LPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVAD 245
Query: 313 TDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNE 372
L AN A+ + D++L G + SK F + IDID +
Sbjct: 246 RYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKA--FKNTRYFLQIDIDPAK 303
Query: 373 IGKVKLPDVSICADA-KLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFG 431
+GK D+++ ADA K + + + E + + W+ L K +
Sbjct: 304 LGKRHKTDIAVLADAQKTLAAILAQVSERESTPW------WQANLANVKNWRAYLASLED 357
Query: 432 EEIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFG 489
++ P A Q+L + + + I S VG + A + + + +TS+ F +MG G
Sbjct: 358 KQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVG 417
Query: 490 LXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPV-KILLINNQYLGMNVEYE 548
+ V ++ GDG M +Q+L ++PV ++ N QY + E E
Sbjct: 418 IPGAIAAKLNYPERQVFNLAGDGGASMTMQDLVTQVQYHLPVINVVFTNCQYGFIKDEQE 477
Query: 549 DRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK 590
D N F+G + ++I D K A+ + A RV K
Sbjct: 478 D-----TNQNDFIG--VEFNDI--DFSKIADGVHMQAFRVNK 510
>pdb|1V5E|A Chain A, Crystal Structure Of Pyruvate Oxidase Containing Fad, From
Aerococcus Viridans
pdb|2DJI|A Chain A, Crystal Structure Of Pyruvate Oxidase From Aerococcus
Viridans Containing Fad
Length = 590
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 138/533 (25%), Positives = 233/533 (43%), Gaps = 42/533 (7%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSL--TRSNIRSILPRHEQGGIFAAEGYARSSGTP 133
+++ LE G T++ P G + ++ +N++ + +HE+ G AA ++ G
Sbjct: 10 VMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNL 69
Query: 134 GVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKH 193
GV + S GPG ++++ GL DA D+IP++AI G Q+ L DAFQE+ + ++ +
Sbjct: 70 GVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVY 129
Query: 194 NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD-VQLELAVPNWNQPCKLPSCISSL 252
N V + +P+++ EA +A + R G ++++P D ++E+ W S
Sbjct: 130 NRRVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQWYSSAN--SLRKYA 186
Query: 253 PKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPC 312
P P + ++L+ SK PV+ G G + +++ PV T F
Sbjct: 187 PIAPAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNFETFEW 246
Query: 313 TDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSN 371
E G AN + E D +L AG F S++E F + IDID
Sbjct: 247 DFEALTGSTYRVGWKPANETILEADTVLFAGSNF---PFSEVEGTFRNVDNFIQIDIDPA 303
Query: 372 EIGKVKLPDVSICADAKL----VFNRMNMILESK-GVGFMFDFSAWREELHEQKKKYPFS 426
+GK DV+I DA L + N+++ + ES + + + WRE ++ + K
Sbjct: 304 MLGKRHHADVAILGDAALAIDEILNKVDAVEESAWWTANLKNIANWREYINMLETK---- 359
Query: 427 YKTFGEEIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFG 484
EE Q+ Q+ N + + DE+ I S VG +I+ TS F
Sbjct: 360 -----EEGDLQF-YQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFA 413
Query: 485 SMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPV-KILLINNQYLGM 543
+MG + V +I GDG+F M ++ N+PV ++ N +Y +
Sbjct: 414 TMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNTEYAFI 473
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDM--LKFAEACGIPAARVTKKKDV 594
+YED N F D F D+ K AEA G V++ +D+
Sbjct: 474 KNKYED-----TNKNLFGVD-------FTDVDYAKIAEAQGAKGFTVSRIEDM 514
>pdb|1V5F|A Chain A, Crystal Structure Of Pyruvate Oxidase Complexed With Fad
And Tpp, From Aerococcus Viridans
pdb|1V5G|A Chain A, Crystal Structure Of The Reaction Intermediate Between
Pyruvate Oxidase Containing Fad And Tpp, And Substrate
Pyruvate
Length = 589
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 138/533 (25%), Positives = 233/533 (43%), Gaps = 42/533 (7%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSL--TRSNIRSILPRHEQGGIFAAEGYARSSGTP 133
+++ LE G T++ P G + ++ +N++ + +HE+ G AA ++ G
Sbjct: 9 VMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNL 68
Query: 134 GVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKH 193
GV + S GPG ++++ GL DA D+IP++AI G Q+ L DAFQE+ + ++ +
Sbjct: 69 GVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVY 128
Query: 194 NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD-VQLELAVPNWNQPCKLPSCISSL 252
N V + +P+++ EA +A + R G ++++P D ++E+ W S
Sbjct: 129 NRRVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQWYSSAN--SLRKYA 185
Query: 253 PKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPC 312
P P + ++L+ SK PV+ G G + +++ PV T F
Sbjct: 186 PIAPAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNFETFEW 245
Query: 313 TDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSN 371
E G AN + E D +L AG F S++E F + IDID
Sbjct: 246 DFEALTGSTYRVGWKPANETILEADTVLFAGSNF---PFSEVEGTFRNVDNFIQIDIDPA 302
Query: 372 EIGKVKLPDVSICADAKL----VFNRMNMILESK-GVGFMFDFSAWREELHEQKKKYPFS 426
+GK DV+I DA L + N+++ + ES + + + WRE ++ + K
Sbjct: 303 MLGKRHHADVAILGDAALAIDEILNKVDAVEESAWWTANLKNIANWREYINMLETK---- 358
Query: 427 YKTFGEEIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFG 484
EE Q+ Q+ N + + DE+ I S VG +I+ TS F
Sbjct: 359 -----EEGDLQF-YQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFA 412
Query: 485 SMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPV-KILLINNQYLGM 543
+MG + V +I GDG+F M ++ N+PV ++ N +Y +
Sbjct: 413 TMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNTEYAFI 472
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDM--LKFAEACGIPAARVTKKKDV 594
+YED N F D F D+ K AEA G V++ +D+
Sbjct: 473 KNKYED-----TNKNLFGVD-------FTDVDYAKIAEAQGAKGFTVSRIEDM 513
>pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|E Chain E, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|F Chain F, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|2IHV|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHU|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
Length = 573
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 134/524 (25%), Positives = 219/524 (41%), Gaps = 32/524 (6%)
Query: 111 ILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQV-S 169
+L RHE AA+ AR +G P C + GPG+TN+ TG+ + D P++A+ Q S
Sbjct: 52 VLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSES 111
Query: 170 QKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229
+ D Q + V + M+K+ + +I ++ A A + GP I +PVD
Sbjct: 112 HDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171
Query: 230 V-----QLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLN 284
+ ++ VP N P P+ + + + A Q L+ E+K+PVL VG +
Sbjct: 172 LLGSSEGIDTTVP--NPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIR 229
Query: 285 SSE--ELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNE-----CD 337
S +R IPV T + G+ P EL V + N+ + D
Sbjct: 230 SGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVD 289
Query: 338 LLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMI 397
L+L G + E + + K V I N I +V PDV + D
Sbjct: 290 LVLTVGYDYAEDLRPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETA 349
Query: 398 LESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDD-----EET 452
S G D R + E + +T+ + + I +N + ++ E T
Sbjct: 350 TASFGAKQRHDIEPLRARIAE----FLADPETYEDGMRVHQVIDSMNTVMEEAAEPGEGT 405
Query: 453 IISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDG 512
I+S +G + + + F + LTS+G S G+G+ I GDG
Sbjct: 406 IVSD-IGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDG 464
Query: 513 SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFP 572
F N +L I N+P+ +++NN G+ Y+ N + DP K
Sbjct: 465 GFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQ------NIGHHRSHDPAVKFGGV- 517
Query: 573 DMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSY 616
D + AEA G+ A R T ++++ AA++ E P+L++V V+Y
Sbjct: 518 DFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEVPVNY 561
>pdb|1UPA|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|2IHT|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
Length = 573
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 134/524 (25%), Positives = 215/524 (41%), Gaps = 32/524 (6%)
Query: 111 ILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQV-S 169
+L RHE AA+ AR +G P C + GPG TN+ TG+ + D P++A+ Q S
Sbjct: 52 VLTRHEFTAGVAADVLARITGRPQACWATLGPGXTNLSTGIATSVLDRSPVIALAAQSES 111
Query: 170 QKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229
+ D Q + V + +K+ + +I ++ A A + GP I +PVD
Sbjct: 112 HDIFPNDTHQCLDSVAIVAPXSKYAVELQRPHEITDLVDSAVNAAXTEPVGPSFISLPVD 171
Query: 230 V-----QLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLN 284
+ ++ VP N P P+ + + + A Q L+ E+K+PVL VG +
Sbjct: 172 LLGSSEGIDTTVP--NPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIR 229
Query: 285 SSE--ELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNE-----CD 337
S +R IPV T + G+ P EL V + N+ + D
Sbjct: 230 SGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYXDGILNFPALQTXFAPVD 289
Query: 338 LLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMI 397
L+L G + E + K V I N I +V PDV + D
Sbjct: 290 LVLTVGYDYAEDLRPSXWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETA 349
Query: 398 LESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDD-----EET 452
S G D R + E + +T+ + I N + ++ E T
Sbjct: 350 TASFGAKQRHDIEPLRARIAE----FLADPETYEDGXRVHQVIDSXNTVXEEAAEPGEGT 405
Query: 453 IISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDG 512
I+S +G + + + F + LTS+G S G+G+ I GDG
Sbjct: 406 IVSD-IGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQXARPDQPTFLIAGDG 464
Query: 513 SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFP 572
F N +L I N+P+ +++NN G+ Y+ N + DP K
Sbjct: 465 GFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQ------NIGHHRSHDPAVKFGGV- 517
Query: 573 DMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSY 616
D + AEA G+ A R T ++++ AA++ E P+L++V V+Y
Sbjct: 518 DFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEVPVNY 561
>pdb|2UZ1|B Chain B, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|C Chain C, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 126/501 (25%), Positives = 229/501 (45%), Gaps = 29/501 (5%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G +++V L + GV +F G I Q+ ++ I RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGA 65
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE-IPVVEVTRYM 190
GV LV++G G TN +T + +A+ D P+L +TG + + T+ Q I V + +
Sbjct: 66 KLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPI 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQ----PCKLP 246
TK + V+ + IPR++ +A A S GPVL+D+P D+ + NQ +P
Sbjct: 126 TKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILM-------NQIDEDSVIIP 178
Query: 247 SCI-SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEE--LRKFVGLTGIPVTCT 303
+ S+ PD L Q L L+ +++ PV+ +G ++ + L FV TG+PV
Sbjct: 179 DLVLSAHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFAD 238
Query: 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNEC-DLLLAAGVRFN-ERMTSKLEDFATRA 361
GL + + +R G+ +Y+ + DL+L G RF + A
Sbjct: 239 YEGLSMLSGLPD-AMRG-GLVQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQLIPHSA 296
Query: 362 KIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMF-DFSAWREELHE-- 418
+++ +D D+ E+G+++ + I AD V + + ++ + D W ++ +
Sbjct: 297 QVIQVDPDACELGRLQGIALGIVAD---VGGTIEALAQATAQDAAWPDRGDWCAKVTDLA 353
Query: 419 QKKKYPFSYKTFGEE-IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQL 477
Q++ + K+ E + P +A Q++ + D T+++ G + +W + +
Sbjct: 354 QERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTY-LWLSEVMSRVKPGGF 412
Query: 478 LTSSGFGSM--GFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILL 535
L GSM GFG + + GDGS ++ E + + +P+ +++
Sbjct: 413 LCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVII 472
Query: 536 INNQYLGMNVEYEDRYFEANR 556
+NNQ G + ++ NR
Sbjct: 473 MNNQSWGATLHFQQLAVGPNR 493
>pdb|2AG0|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2UZ1|A Chain A, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|D Chain D, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 126/501 (25%), Positives = 228/501 (45%), Gaps = 29/501 (5%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G +++V L + GV +F G I Q+ ++ I RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGA 65
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE-IPVVEVTRYM 190
GV LV++G G TN +T + +A+ D P+L +TG + + T+ Q I V + +
Sbjct: 66 KLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPI 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQ----PCKLP 246
TK + V+ + IPR++ +A A S GPVL+D+P D+ + NQ +P
Sbjct: 126 TKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILM-------NQIDEDSVIIP 178
Query: 247 SCI-SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEE--LRKFVGLTGIPVTCT 303
+ S+ PD L Q L L+ +++ PV+ +G ++ + L FV TG+PV
Sbjct: 179 DLVLSAHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFAD 238
Query: 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNEC-DLLLAAGVRFNERMTSKLEDFATR-A 361
GL + + +R G+ +Y+ + DL+L G RF A
Sbjct: 239 YEGLSMLSGLPD-AMRG-GLVQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQLIPHSA 296
Query: 362 KIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMF-DFSAWREELHE-- 418
+++ +D D+ E+G+++ + I AD V + + ++ + D W ++ +
Sbjct: 297 QVIQVDPDACELGRLQGIALGIVAD---VGGTIEALAQATAQDAAWPDRGDWCAKVTDLA 353
Query: 419 QKKKYPFSYKTFGEE-IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQL 477
Q++ + K+ E + P +A Q++ + D T+++ G + +W + +
Sbjct: 354 QERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTY-LWLSEVMSRVKPGGF 412
Query: 478 LTSSGFGSM--GFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILL 535
L GSM GFG + + GDGS ++ E + + +P+ +++
Sbjct: 413 LCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVII 472
Query: 536 INNQYLGMNVEYEDRYFEANR 556
+NNQ G + ++ NR
Sbjct: 473 MNNQSWGATLHFQQLAVGPNR 493
>pdb|3D7K|A Chain A, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
pdb|3D7K|B Chain B, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
Length = 570
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 126/501 (25%), Positives = 228/501 (45%), Gaps = 29/501 (5%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G +++V L + GV +F G I Q+ ++ I RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGA 65
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE-IPVVEVTRYM 190
GV LV++G G TN +T + +A+ D P+L +TG + + T+ Q I V + +
Sbjct: 66 KLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPI 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQ----PCKLP 246
TK + V+ + IPR++ +A A S GPVL+D+P D+ + NQ +P
Sbjct: 126 TKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILM-------NQIDEDSVIIP 178
Query: 247 SCI-SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEE--LRKFVGLTGIPVTCT 303
+ S+ PD L Q L L+ +++ PV+ +G ++ + L FV TG+PV
Sbjct: 179 DLVLSAHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFAD 238
Query: 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNEC-DLLLAAGVRFNERMTSKLEDFATR-A 361
GL + + +R G+ +Y+ + DL+L G RF A
Sbjct: 239 YEGLSMLSGLPD-AMRG-GLVQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQLIPHSA 296
Query: 362 KIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMF-DFSAWREELHE-- 418
+++ +D D+ E+G+++ + I AD V + + ++ + D W ++ +
Sbjct: 297 QVIQVDPDACELGRLQGIALGIVAD---VGGTIEALAQATAQDAAWPDRGDWCAKVTDLA 353
Query: 419 QKKKYPFSYKTFGEE-IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQL 477
Q++ + K+ E + P +A Q++ + D T+++ G + +W + +
Sbjct: 354 QERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTY-LWLSEVMSRVKPGGF 412
Query: 478 LTSSGFGSM--GFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILL 535
L GSM GFG + + GDGS ++ E + + +P+ +++
Sbjct: 413 LCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVII 472
Query: 536 INNQYLGMNVEYEDRYFEANR 556
+NNQ G + ++ NR
Sbjct: 473 MNNQSWGATLHFQQLAVGPNR 493
>pdb|3IAE|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
pdb|3IAE|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
Length = 570
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 126/501 (25%), Positives = 228/501 (45%), Gaps = 29/501 (5%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G +++V L + GV +F G I Q+ ++ I RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGSHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGA 65
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE-IPVVEVTRYM 190
GV LV++G G TN +T + +A+ D P+L +TG + + T+ Q I V + +
Sbjct: 66 KLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPI 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQ----PCKLP 246
TK + V+ + IPR++ +A A S GPVL+D+P D+ + NQ +P
Sbjct: 126 TKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILM-------NQIDEDSVIIP 178
Query: 247 SCI-SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEE--LRKFVGLTGIPVTCT 303
+ S+ PD L Q L L+ +++ PV+ +G ++ + L FV TG+PV
Sbjct: 179 DLVLSAHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFAD 238
Query: 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNEC-DLLLAAGVRFNERMTSKLEDFATR-A 361
GL + + +R G+ +Y+ + DL+L G RF A
Sbjct: 239 YEGLSMLSGLPD-AMRG-GLVQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQLIPHSA 296
Query: 362 KIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMF-DFSAWREELHE-- 418
+++ +D D+ E+G+++ + I AD V + + ++ + D W ++ +
Sbjct: 297 QVIQVDPDACELGRLQGIALGIVAD---VGGTIEALAQATAQDAAWPDRGDWCAKVTDLA 353
Query: 419 QKKKYPFSYKTFGEE-IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQL 477
Q++ + K+ E + P +A Q++ + D T+++ G + +W + +
Sbjct: 354 QERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTY-LWLSEVMSRVKPGGF 412
Query: 478 LTSSGFGSM--GFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILL 535
L GSM GFG + + GDGS ++ E + + +P+ +++
Sbjct: 413 LCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVII 472
Query: 536 INNQYLGMNVEYEDRYFEANR 556
+NNQ G + ++ NR
Sbjct: 473 MNNQSWGATLHFQQLAVGPNR 493
>pdb|3IAF|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|C Chain C, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|D Chain D, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
Length = 570
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 126/501 (25%), Positives = 228/501 (45%), Gaps = 29/501 (5%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G +++V L + GV +F G I Q+ ++ I RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGXHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGA 65
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE-IPVVEVTRYM 190
GV LV++G G TN +T + +A+ D P+L +TG + + T+ Q I V + +
Sbjct: 66 KLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPI 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQ----PCKLP 246
TK + V+ + IPR++ +A A S GPVL+D+P D+ + NQ +P
Sbjct: 126 TKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILM-------NQIDEDSVIIP 178
Query: 247 SCI-SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEE--LRKFVGLTGIPVTCT 303
+ S+ PD L Q L L+ +++ PV+ +G ++ + L FV TG+PV
Sbjct: 179 DLVLSAHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFAD 238
Query: 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNEC-DLLLAAGVRFNERMTSKLEDFATR-A 361
GL + + +R G+ +Y+ + DL+L G RF A
Sbjct: 239 YEGLSMLSGLPD-AMRG-GLVQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQLIPHSA 296
Query: 362 KIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMF-DFSAWREELHE-- 418
+++ +D D+ E+G+++ + I AD V + + ++ + D W ++ +
Sbjct: 297 QVIQVDPDACELGRLQGIALGIVAD---VGGTIEALAQATAQDAAWPDRGDWCAKVTDLA 353
Query: 419 QKKKYPFSYKTFGEE-IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQL 477
Q++ + K+ E + P +A Q++ + D T+++ G + +W + +
Sbjct: 354 QERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTY-LWLSEVMSRVKPGGF 412
Query: 478 LTSSGFGSM--GFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILL 535
L GSM GFG + + GDGS ++ E + + +P+ +++
Sbjct: 413 LCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVII 472
Query: 536 INNQYLGMNVEYEDRYFEANR 556
+NNQ G + ++ NR
Sbjct: 473 MNNQSWGATLHFQQLAVGPNR 493
>pdb|2AG1|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
Length = 563
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 123/500 (24%), Positives = 223/500 (44%), Gaps = 27/500 (5%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G +++V L + GV +F G I Q+ ++ I RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGA 65
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE-IPVVEVTRYM 190
GV LV++G G TN +T + +A+ D P+L +TG + + T+ Q I V +
Sbjct: 66 KLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAXAAPI 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDV---QLELAVPNWNQPCKLPS 247
TK + V + IPR++ +A A S GPVL+D+P D+ Q++ +P
Sbjct: 126 TKWAHRVXATEHIPRLVXQAIRAALSAPRGPVLLDLPWDILXNQID------EDSVIIPD 179
Query: 248 CI-SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEE--LRKFVGLTGIPVTCTT 304
+ S+ PD L Q L L+ +++ PV+ +G ++ + L FV TG+PV
Sbjct: 180 LVLSAHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFADY 239
Query: 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNEC-DLLLAAGVRFN-ERMTSKLEDFATRAK 362
GL + G+ +Y+ + DL+L G RF + A+
Sbjct: 240 EGLSXLSGLPDAX--RGGLVQNLYSFAKADAAPDLVLXLGARFGLNTGHGSGQLIPHSAQ 297
Query: 363 IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMF-DFSAWREELHE--Q 419
++ +D D+ E+G+++ + I AD V + + ++ + D W ++ + Q
Sbjct: 298 VIQVDPDACELGRLQGIALGIVAD---VGGTIEALAQATAQDAAWPDRGDWCAKVTDLAQ 354
Query: 420 KKKYPFSYKTFGEE-IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
++ + K+ E + P +A Q++ + D T+++ G + +W + + L
Sbjct: 355 ERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTY-LWLSEVXSRVKPGGFL 413
Query: 479 TSSGFGS--MGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536
GS +GFG + + GDGS ++ E + + +P+ +++
Sbjct: 414 CHGYLGSXGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIX 473
Query: 537 NNQYLGMNVEYEDRYFEANR 556
NNQ G + ++ NR
Sbjct: 474 NNQSWGATLHFQQLAVGPNR 493
>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q27|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q28|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q28|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q29|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
pdb|2Q29|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
Length = 564
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 118/486 (24%), Positives = 206/486 (42%), Gaps = 40/486 (8%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G IIVEAL++ + T++ G ++ + IR I RHEQ +AA +
Sbjct: 10 GMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQ 69
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL--LGTDAFQEIPVVEVTRY 189
PG+CL S PG N +T L +A + P++ I+G + + L ++E+ + +
Sbjct: 70 KPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKP 129
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDV---------QLELAVPNWN 240
K + V D+ + A ++ SGRPG V +D+P +V L V N
Sbjct: 130 YAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTIVKVEN 189
Query: 241 QPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSS--EELRKFVGLTGI 298
L C PK ++ + L+ +++ P++ +G G S E+LR+F+ I
Sbjct: 190 PSPALLPC----PK-----SVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQI 240
Query: 299 PVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA 358
P +M G+ T L F A D+++ G R N + + +A
Sbjct: 241 PFLPMSMAKGILEDTHPLSAAAARSFALANA-------DVVMLVGARLNWLLAHGKKGWA 293
Query: 359 TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWRE--EL 416
+ + +DI+ EI + V + D + + M+ E K F WR+ +
Sbjct: 294 ADTQFIQLDIEPQEIDSNRPIAVPVVGD--IASSMQGMLAELKQNTFTTPL-VWRDILNI 350
Query: 417 HEQKKKYPFSYKTFGEEIPPQY--AIQILNELTDDEETIISTGVGQHQMWAIQ--FYMYK 472
H+Q+ K + P Y A+ + ++ + + I G + + + MYK
Sbjct: 351 HKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYK 410
Query: 473 RARQLLTSSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVK 532
R+L + +G MG G+ +V I+GD +F + E+ I N+PV
Sbjct: 411 PRRRLDCGT-WGVMGIGMGYAIGASVTSGSPVVA-IEGDSAFGFSGMEIETICRYNLPVT 468
Query: 533 ILLINN 538
I++ NN
Sbjct: 469 IVIFNN 474
>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2C31|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2JI6|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI6|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI7|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI7|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI8|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI8|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI9|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JI9|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JIB|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
pdb|2JIB|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
Length = 568
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 116/479 (24%), Positives = 205/479 (42%), Gaps = 23/479 (4%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G ++++AL+ + T++ G + + R RHEQ +AA G
Sbjct: 12 GFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEG 71
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL--LGTDAFQEIPVVEVTRY 189
PGVCL S PG N +T L A ++ P++ ++G +++ L ++E+ + V R
Sbjct: 72 KPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARP 131
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDV-QLELAVPNWNQPCKLPSC 248
K ++ + + DIP I A A SGRPG V +D+P + ++V N+ P
Sbjct: 132 HCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVEEANKLLFKP-- 189
Query: 249 ISSLPKE-PDELALRQTLKLIVESKNPVLCVGGGC--LNSSEELRKFVGLTGIPVTCTTM 305
I P + P E A+ + LI +K PV+ +G G +E+R V TGIP M
Sbjct: 190 IDPAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGM 249
Query: 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT-SKLEDFATR-AKI 363
GL P +A+ +CD+ + G R N M K + + K
Sbjct: 250 AKGLLPDNHPQSA-------AATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKY 302
Query: 364 VHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKY 423
V IDI +NE+ + + D K + + L+ A + ++ K K
Sbjct: 303 VQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAPKADAEWTGALKAKVDGNKAKL 362
Query: 424 P--FSYKTFGEEIPPQYAIQILNE--LTDDEETIISTGVGQHQMWAIQFYMYKRARQLLT 479
+ +T + ++ ++ + L + + ++++ G + M K R+ L
Sbjct: 363 AGKMTAETPSGMMNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLK-PRKRLD 421
Query: 480 SSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
S +G MG G+ ++ ++GD +F + EL I N+PV ++++NN
Sbjct: 422 SGTWGVMGIGMGYCVAAAAVTGKPVIA-VEGDSAFGFSGMELETICRYNLPVTVIIMNN 479
>pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|B Chain B, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|C Chain C, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|D Chain D, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
Length = 528
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 114/556 (20%), Positives = 210/556 (37%), Gaps = 65/556 (11%)
Query: 78 EALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCL 137
E L RQG+ TVF PG + + + R IL E + A+GYA++S P
Sbjct: 10 ELLRRQGIDTVFGNPGSNELPFLKDFPE-DFRYILALQEACVVGIADGYAQASRKPAFIN 68
Query: 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA-FQEIPVVEVTRYMTKHNYL 196
+ S G N M L +A++ P++ GQ ++ ++G +A + + R + K +Y
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 197 VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEP 256
++P + A +A+ GPV + +P D + A P + +SS +
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHH--LFDRHVSSSVRLN 186
Query: 257 DELALRQTLKLIVESKNPVLCVG---------GGCLNSSEELRKFVGLTGIPVTCTTMGL 307
D+ L +K + + NP + +G C+ +E L+ V + C
Sbjct: 187 DQ-DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP---- 241
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGV---RFNERMTSKLEDFATRAKIV 364
FP T C R + G + + D++L G R+++ + TR ++
Sbjct: 242 --FP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR--LI 296
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424
+ D E + + D + + N++ ES +L + P
Sbjct: 297 SVTCDPLEAARAPMGDAIVADIGAMASALANLVEESS------------RQLPTAAPE-P 343
Query: 425 FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVG-QHQMWAIQFYMYKRARQLLTSSGF 483
+ P+ LN++ + ++ QMW + M ++
Sbjct: 344 AKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQ-RLNMRNPGSYYFCAA-- 400
Query: 484 GSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G +GF L V+ + GDGS ++ L NIP +++NN G
Sbjct: 401 GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGA 460
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFP-------DMLKFAEACGIPAARVTKKKDVRA 596
R+F + ++E P D A+ G+ A + + ++
Sbjct: 461 A-----RWFAG----------VLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKG 505
Query: 597 AIQLMLETPGPYLLDV 612
++Q L GP L++V
Sbjct: 506 SLQEALSAKGPVLIEV 521
>pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida
pdb|1Q6Z|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamin Thiazolone Diphosphate
Length = 528
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 114/556 (20%), Positives = 211/556 (37%), Gaps = 65/556 (11%)
Query: 78 EALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCL 137
E L RQG+ TVF PG ++ + + R IL E + A+GYA++S P
Sbjct: 10 ELLRRQGIDTVFGNPGSNALPFLKDFPE-DFRYILALQEACVVGIADGYAQASRKPAFIN 68
Query: 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA-FQEIPVVEVTRYMTKHNYL 196
+ S G N M L +A++ P++ GQ ++ ++G +A + + R + K +Y
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 197 VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEP 256
++P + A +A+ GPV + +P D + A P + +SS +
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHH--LFDRHVSSSVRLN 186
Query: 257 DELALRQTLKLIVESKNPVLCVG---------GGCLNSSEELRKFVGLTGIPVTCTTMGL 307
D+ L +K + + NP + +G C+ +E L+ V + C
Sbjct: 187 DQ-DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP---- 241
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGV---RFNERMTSKLEDFATRAKIV 364
FP T C R + G + + D++L G R+++ + TR ++
Sbjct: 242 --FP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR--LI 296
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424
+ D E + + D + + N++ ES +L + P
Sbjct: 297 SVTCDPLEAARAPMGDAIVADIGAMASALANLVEESS------------RQLPTAAPE-P 343
Query: 425 FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVG-QHQMWAIQFYMYKRARQLLTSSGF 483
+ P+ LN++ + ++ QMW + M ++
Sbjct: 344 AKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQ-RLNMRNPGSYYFCAA-- 400
Query: 484 GSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G +GF L V+ + GDGS ++ L NIP +++NN G
Sbjct: 401 GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGA 460
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFP-------DMLKFAEACGIPAARVTKKKDVRA 596
R+F + ++E P D A+ G+ A + + ++
Sbjct: 461 L-----RWFAG----------VLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKG 505
Query: 597 AIQLMLETPGPYLLDV 612
++Q L GP L++V
Sbjct: 506 SLQEALSAKGPVLIEV 521
>pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor Paa
pdb|3F6E|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor 3-Pkb
Length = 525
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 114/556 (20%), Positives = 210/556 (37%), Gaps = 65/556 (11%)
Query: 78 EALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCL 137
E L RQG+ TVF PG + + + R IL E + A+GYA++S P
Sbjct: 9 ELLRRQGIDTVFGNPGSNELPFLKDFPE-DFRYILALQEACVVGIADGYAQASRKPAFIN 67
Query: 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA-FQEIPVVEVTRYMTKHNYL 196
+ S G N M L +A++ P++ GQ ++ ++G +A + + R + K +Y
Sbjct: 68 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 127
Query: 197 VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEP 256
++P + A +A+ GPV + +P D + A P + +SS +
Sbjct: 128 PASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHH--LFDRHVSSSVRLN 185
Query: 257 DELALRQTLKLIVESKNPVLCVG---------GGCLNSSEELRKFVGLTGIPVTCTTMGL 307
D+ L +K + + NP + +G C+ +E L+ V + C
Sbjct: 186 DQ-DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP---- 240
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGV---RFNERMTSKLEDFATRAKIV 364
FP T C R + G + + D++L G R+++ + TR ++
Sbjct: 241 --FP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR--LI 295
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424
+ D E + + D + + N++ ES +L + P
Sbjct: 296 SVTCDPLEAARAPMGDAIVADIGAMASALANLVEESS------------RQLPTAAPE-P 342
Query: 425 FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVG-QHQMWAIQFYMYKRARQLLTSSGF 483
+ P+ LN++ + ++ QMW + M ++
Sbjct: 343 AKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQ-RLNMRNPGSYYFCAA-- 399
Query: 484 GSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G +GF L V+ + GDGS ++ L NIP +++NN G
Sbjct: 400 GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGA 459
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFP-------DMLKFAEACGIPAARVTKKKDVRA 596
R+F + ++E P D A+ G+ A + + ++
Sbjct: 460 L-----RWFAG----------VLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKG 504
Query: 597 AIQLMLETPGPYLLDV 612
++Q L GP L++V
Sbjct: 505 SLQEALSAKGPVLIEV 520
>pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamine Thiazolone Diphosphate
Length = 528
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 114/556 (20%), Positives = 210/556 (37%), Gaps = 65/556 (11%)
Query: 78 EALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCL 137
E L RQG+ TVF PG + + + R IL E + A+GYA++S P
Sbjct: 10 ELLRRQGIDTVFGNPGANELPFLKDFPE-DFRYILALQEACVVGIADGYAQASRKPAFIN 68
Query: 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA-FQEIPVVEVTRYMTKHNYL 196
+ S G N M L +A++ P++ GQ ++ ++G +A + + R + K +Y
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 197 VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEP 256
++P + A +A+ GPV + +P D + A P + +SS +
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHH--LFDRHVSSSVRLN 186
Query: 257 DELALRQTLKLIVESKNPVLCVG---------GGCLNSSEELRKFVGLTGIPVTCTTMGL 307
D+ L +K + + NP + +G C+ +E L+ V + C
Sbjct: 187 DQ-DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP---- 241
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGV---RFNERMTSKLEDFATRAKIV 364
FP T C R + G + + D++L G R+++ + TR ++
Sbjct: 242 --FP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR--LI 296
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424
+ D E + + D + + N++ ES +L + P
Sbjct: 297 SVTCDPLEAARAPMGDAIVADIGAMASALANLVEESS------------RQLPTAAPE-P 343
Query: 425 FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVG-QHQMWAIQFYMYKRARQLLTSSGF 483
+ P+ LN++ + ++ QMW + M ++
Sbjct: 344 AKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQ-RLNMRNPGSYYFCAA-- 400
Query: 484 GSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G +GF L V+ + GDGS ++ L NIP +++NN G
Sbjct: 401 GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGA 460
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFP-------DMLKFAEACGIPAARVTKKKDVRA 596
R+F + ++E P D A+ G+ A + + ++
Sbjct: 461 L-----RWFAG----------VLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKG 505
Query: 597 AIQLMLETPGPYLLDV 612
++Q L GP L++V
Sbjct: 506 SLQEALSAKGPVLIEV 521
>pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase
From Pseudomonas Putida Complexed With Thiamine
Thiazolone Diphosphate
Length = 527
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 114/556 (20%), Positives = 210/556 (37%), Gaps = 65/556 (11%)
Query: 78 EALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCL 137
E L RQG+ TVF PG + + + R IL E + A+GYA++S P
Sbjct: 9 ELLRRQGIDTVFGNPGSNELPFLKDFPE-DFRYILALQEACVVGIADGYAQASRKPAFIN 67
Query: 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA-FQEIPVVEVTRYMTKHNYL 196
+ S G N M L +A++ P++ GQ ++ ++G +A + + R + K +Y
Sbjct: 68 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 127
Query: 197 VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEP 256
++P + A +A+ GPV + +P D + A P + +SS +
Sbjct: 128 PASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHH--LFDRHVSSSVRLN 185
Query: 257 DELALRQTLKLIVESKNPVLCVG---------GGCLNSSEELRKFVGLTGIPVTCTTMGL 307
D+ L +K + + NP + +G C+ +E L+ V + C
Sbjct: 186 DQ-DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP---- 240
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGV---RFNERMTSKLEDFATRAKIV 364
FP T C R + G + + D++L G R+++ + TR ++
Sbjct: 241 --FP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR--LI 295
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424
+ D E + + D + + N++ ES +L + P
Sbjct: 296 SVTCDPLEAARAPMGDAIVADIGAMASALANLVEESS------------RQLPTAAPE-P 342
Query: 425 FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVG-QHQMWAIQFYMYKRARQLLTSSGF 483
+ P+ LN++ + ++ QMW + M ++
Sbjct: 343 AKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQ-RLNMRNPGSYYFCAA-- 399
Query: 484 GSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G +GF L V+ + GDGS ++ L NIP +++NN G
Sbjct: 400 GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGA 459
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFP-------DMLKFAEACGIPAARVTKKKDVRA 596
R+F + ++E P D A+ G+ A + + ++
Sbjct: 460 L-----RWFAG----------VLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKG 504
Query: 597 AIQLMLETPGPYLLDV 612
++Q L GP L++V
Sbjct: 505 SLQEALSAKGPVLIEV 520
>pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|B Chain B, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|C Chain C, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|D Chain D, Intermediate Analogue In Benzoylformate Decarboxylase
Length = 534
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 114/556 (20%), Positives = 210/556 (37%), Gaps = 65/556 (11%)
Query: 78 EALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCL 137
E L RQG+ TVF PG + + + R IL E + A+GYA++S P
Sbjct: 10 ELLRRQGIDTVFGNPGSNELPFLKDFPE-DFRYILALQEACVVGIADGYAQASRKPAFIN 68
Query: 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA-FQEIPVVEVTRYMTKHNYL 196
+ S G N M L +A++ P++ GQ ++ ++G +A + + R + K +Y
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 197 VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEP 256
++P + A +A+ GPV + +P D + A P + +SS +
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHH--LFDRHVSSSVRLN 186
Query: 257 DELALRQTLKLIVESKNPVLCVG---------GGCLNSSEELRKFVGLTGIPVTCTTMGL 307
D+ L +K + + NP + +G C+ +E L+ V + C
Sbjct: 187 DQ-DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP---- 241
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGV---RFNERMTSKLEDFATRAKIV 364
FP T C R + G + + D++L G R+++ + TR ++
Sbjct: 242 --FP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR--LI 296
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424
+ D E + + D + + N++ ES +L + P
Sbjct: 297 SVTCDPLEAARAPMGDAIVADIGAMASALANLVEESS------------RQLPTAAPE-P 343
Query: 425 FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVG-QHQMWAIQFYMYKRARQLLTSSGF 483
+ P+ LN++ + ++ QMW + M ++
Sbjct: 344 AKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQ-RLNMRNPGSYYFCAA-- 400
Query: 484 GSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G +GF L V+ + GDGS ++ L NIP +++NN G
Sbjct: 401 GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGA 460
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFP-------DMLKFAEACGIPAARVTKKKDVRA 596
R+F + ++E P D A+ G+ A + + ++
Sbjct: 461 L-----RWFAG----------VLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKG 505
Query: 597 AIQLMLETPGPYLLDV 612
++Q L GP L++V
Sbjct: 506 SLQEALSAKGPVLIEV 521
>pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|B Chain B, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|C Chain C, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|D Chain D, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|E Chain E, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|F Chain F, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|G Chain G, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|H Chain H, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|I Chain I, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|J Chain J, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|K Chain K, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|L Chain L, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|M Chain M, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|N Chain N, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|O Chain O, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|P Chain P, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1BFD|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
pdb|3FSJ|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Inhibitor Mbp
Length = 528
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 114/556 (20%), Positives = 210/556 (37%), Gaps = 65/556 (11%)
Query: 78 EALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCL 137
E L RQG+ TVF PG + + + R IL E + A+GYA++S P
Sbjct: 10 ELLRRQGIDTVFGNPGSNELPFLKDFPE-DFRYILALQEACVVGIADGYAQASRKPAFIN 68
Query: 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA-FQEIPVVEVTRYMTKHNYL 196
+ S G N M L +A++ P++ GQ ++ ++G +A + + R + K +Y
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 197 VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEP 256
++P + A +A+ GPV + +P D + A P + +SS +
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHH--LFDRHVSSSVRLN 186
Query: 257 DELALRQTLKLIVESKNPVLCVG---------GGCLNSSEELRKFVGLTGIPVTCTTMGL 307
D+ L +K + + NP + +G C+ +E L+ V + C
Sbjct: 187 DQ-DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP---- 241
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGV---RFNERMTSKLEDFATRAKIV 364
FP T C R + G + + D++L G R+++ + TR ++
Sbjct: 242 --FP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR--LI 296
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424
+ D E + + D + + N++ ES +L + P
Sbjct: 297 SVTCDPLEAARAPMGDAIVADIGAMASALANLVEESS------------RQLPTAAPE-P 343
Query: 425 FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVG-QHQMWAIQFYMYKRARQLLTSSGF 483
+ P+ LN++ + ++ QMW + M ++
Sbjct: 344 AKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQ-RLNMRNPGSYYFCAA-- 400
Query: 484 GSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G +GF L V+ + GDGS ++ L NIP +++NN G
Sbjct: 401 GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGA 460
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFP-------DMLKFAEACGIPAARVTKKKDVRA 596
R+F + ++E P D A+ G+ A + + ++
Sbjct: 461 L-----RWFAG----------VLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKG 505
Query: 597 AIQLMLETPGPYLLDV 612
++Q L GP L++V
Sbjct: 506 SLQEALSAKGPVLIEV 521
>pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas
Putida
Length = 528
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 114/556 (20%), Positives = 210/556 (37%), Gaps = 65/556 (11%)
Query: 78 EALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCL 137
E L RQG+ TVF PG + + + R IL E + A+GYA++S P
Sbjct: 10 ELLRRQGIDTVFGNPGSNQLPFLKDFPE-DFRYILALQEACVVGIADGYAQASRKPAFIN 68
Query: 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA-FQEIPVVEVTRYMTKHNYL 196
+ S G N M L +A++ P++ GQ ++ ++G +A + + R + K +Y
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 197 VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEP 256
++P + A +A+ GPV + +P D + A P + +SS +
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHH--LFDRHVSSSVRLN 186
Query: 257 DELALRQTLKLIVESKNPVLCVG---------GGCLNSSEELRKFVGLTGIPVTCTTMGL 307
D+ L +K + + NP + +G C+ +E L+ V + C
Sbjct: 187 DQ-DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP---- 241
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGV---RFNERMTSKLEDFATRAKIV 364
FP T C R + G + + D++L G R+++ + TR ++
Sbjct: 242 --FP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR--LI 296
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424
+ D E + + D + + N++ ES +L + P
Sbjct: 297 SVTCDPLEAARAPMGDAIVADIGAMASALANLVEESS------------RQLPTAAPE-P 343
Query: 425 FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVG-QHQMWAIQFYMYKRARQLLTSSGF 483
+ P+ LN++ + ++ QMW + M ++
Sbjct: 344 AKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQ-RLNMRNPGSYYFCAA-- 400
Query: 484 GSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G +GF L V+ + GDGS ++ L NIP +++NN G
Sbjct: 401 GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGA 460
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFP-------DMLKFAEACGIPAARVTKKKDVRA 596
R+F + ++E P D A+ G+ A + + ++
Sbjct: 461 L-----RWFAG----------VLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKG 505
Query: 597 AIQLMLETPGPYLLDV 612
++Q L GP L++V
Sbjct: 506 SLQEALSAKGPVLIEV 521
>pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp-
Dependent Enzyme By Phosphonate Inactivation
Length = 528
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 114/556 (20%), Positives = 210/556 (37%), Gaps = 65/556 (11%)
Query: 78 EALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCL 137
E L RQG+ TVF PG + + + R IL E + A+GYA++S P
Sbjct: 10 ELLRRQGIDTVFGNPGXNELPFLKDFPE-DFRYILALQEACVVGIADGYAQASRKPAFIN 68
Query: 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA-FQEIPVVEVTRYMTKHNYL 196
+ S G N M L +A++ P++ GQ ++ ++G +A + + R + K +Y
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 197 VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEP 256
++P + A +A+ GPV + +P D + A P + +SS +
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHH--LFDRHVSSSVRLN 186
Query: 257 DELALRQTLKLIVESKNPVLCVG---------GGCLNSSEELRKFVGLTGIPVTCTTMGL 307
D+ L +K + + NP + +G C+ +E L+ V + C
Sbjct: 187 DQ-DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP---- 241
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGV---RFNERMTSKLEDFATRAKIV 364
FP T C R + G + + D++L G R+++ + TR ++
Sbjct: 242 --FP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR--LI 296
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424
+ D E + + D + + N++ ES +L + P
Sbjct: 297 SVTCDPLEAARAPMGDAIVADIGAMASALANLVEESS------------RQLPTAAPE-P 343
Query: 425 FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVG-QHQMWAIQFYMYKRARQLLTSSGF 483
+ P+ LN++ + ++ QMW + M ++
Sbjct: 344 AKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQ-RLNMRNPGSYYFCAA-- 400
Query: 484 GSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G +GF L V+ + GDGS ++ L NIP +++NN G
Sbjct: 401 GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGA 460
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFP-------DMLKFAEACGIPAARVTKKKDVRA 596
R+F + ++E P D A+ G+ A + + ++
Sbjct: 461 L-----RWFAG----------VLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKG 505
Query: 597 AIQLMLETPGPYLLDV 612
++Q L GP L++V
Sbjct: 506 SLQEALSAKGPVLIEV 521
>pdb|2VBF|A Chain A, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBF|B Chain B, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBG|A Chain A, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
pdb|2VBG|B Chain B, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
Length = 570
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 117/508 (23%), Positives = 208/508 (40%), Gaps = 80/508 (15%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIE-IHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
D +++ L G+ +F PG +++ + Q ++R +++ I +E + A+GYAR+
Sbjct: 28 GDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTK- 86
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL----------LGTDAFQEI 181
L + G G + + GL +Y++++P++ I G + K+ L F+
Sbjct: 87 KAAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHF 146
Query: 182 -----PVVEVTRYMTKHNYLVLDVDDI-PRIIKEAFFIATSGRPGPVLIDIPVDVQLELA 235
PV +T N ++D + +++KE PV I++PVDV A
Sbjct: 147 MKMHEPVTAARTLLTAEN-ATYEIDRVLSQLLKER---------KPVYINLPVDV----A 192
Query: 236 VPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEE--LRKFV 293
+P SS +++ L + + + ++ PV+ G ++ E + +FV
Sbjct: 193 AAKAEKPALSLEKESSTTNTTEQVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFV 252
Query: 294 GLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYA----VNECDLLLAAGVRFNER 349
T +P+T G DE +G++ + + V D +L GV
Sbjct: 253 SETKLPITTLNFGK---SAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGV----- 304
Query: 350 MTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDF 409
KL D +T A H+D N++ +S+ D ++FN+ ++E FDF
Sbjct: 305 ---KLTDSSTGAFTHHLD--ENKM-------ISLNIDEGIIFNK---VVED------FDF 343
Query: 410 SAWREELHEQKK-KYPFSY--KTFGEEIPPQYAI------QILNELTDDEETIISTGVGQ 460
A L E K +Y Y K + E IP + Q + LT ETI++ G
Sbjct: 344 RAVVSSLSELKGIEYEGQYIDKQYEEFIPSSAPLSQDRLWQAVESLTQSNETIVAEQ-GT 402
Query: 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQE 520
A ++ +R + +GS+G+ + GDGS + +QE
Sbjct: 403 SFFGASTIFLKSNSR-FIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQE 461
Query: 521 LAAIKAENIPVKILLINNQYLGMNVEYE 548
L E + +INN G VE E
Sbjct: 462 LGLSIREKLNPICFIINND--GYTVERE 487
>pdb|2VBI|A Chain A, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|B Chain B, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|C Chain C, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|D Chain D, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|E Chain E, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|F Chain F, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|G Chain G, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|H Chain H, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
Length = 566
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/550 (21%), Positives = 203/550 (36%), Gaps = 91/550 (16%)
Query: 121 FAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE 180
F+AEGYARS+G +V+ G + M L AY++++P++ I+G + GT
Sbjct: 55 FSAEGYARSNGA-AAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILH 113
Query: 181 IPV--------VEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL 232
+ +E+ R +T + D P I A R P +DI ++
Sbjct: 114 HTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERK-PAYLDIACNIAS 172
Query: 233 ELAVPNWNQPCKLPSCISSLPKEPD------ELALRQTLKLIVESKNPVLCVG-----GG 281
E PC P +SSL EP+ + A+ T+ L+ +S +PV+ +G
Sbjct: 173 E--------PCVRPGPVSSLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAAN 224
Query: 282 CLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNE----CD 337
L ++E L + VT G FP D R G++ +N V E D
Sbjct: 225 ALAATETLADKLQCA---VTIMAAAKGFFP-EDHAGFR--GLYWGEVSNPGVQELVETSD 278
Query: 338 LLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMI 397
LL FN+ T + K P+V + ++ +
Sbjct: 279 ALLCIAPVFNDYSTVGWSAWP------------------KGPNVILAEPDRVTVD----- 315
Query: 398 LESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNE---LTDDE---- 450
G +D R L +K P + + P ++ ++ LT+DE
Sbjct: 316 ------GRAYDGFTLRAFLQALAEKAPARPASAQKSSVPTCSLTATSDEAGLTNDEIVRH 369
Query: 451 -------ETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLXXXXXXXXXXXXX 503
T + G A++ + + AR L +G +G+ +
Sbjct: 370 INALLTSNTTLVAETGDSWFNAMRMTLPRGARVELEMQ-WGHIGWSVPSAFGNAMGSQDR 428
Query: 504 IVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGD 563
V + GDGSF + QE+A + +PV I LINN+ + + D + + + G
Sbjct: 429 QHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYIKNWDYAG- 487
Query: 564 PLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPM 623
++ E G+ T K+ A + T GP L++ + + +
Sbjct: 488 -------LMEVFNAGEGHGLGLKATTPKELTEAIARAKANTRGPTLIECQIDRTDCTDML 540
Query: 624 IPYDKSFKDT 633
+ + + T
Sbjct: 541 VQWGRKVAST 550
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 148/332 (44%), Gaps = 39/332 (11%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPG 134
+ E L++ V T+F PG ++ + ++ +R +E +AA+GYAR G
Sbjct: 10 LFERLKQVEVQTIFGLPGDFNLSLLDNIYEVPGMRWAGNANELNAAYAADGYARLKGMS- 68
Query: 135 VCLVSS-GPGVTNIMTGLMDAYSDSIPIL------AITGQVSQKLL----GTDAFQEIPV 183
C++++ G G + + G+ +Y++ + +L +++ Q Q LL G F
Sbjct: 69 -CIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSVSSQAKQLLLHHTLGNGDFTVFH- 126
Query: 184 VEVTRYMTKHNYLVLDVDDIP----RIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNW 239
++ +++ ++ D++ P R I+ + S RP V + +P ++ ++L VP
Sbjct: 127 -RMSSNISETTAMITDINTAPAEIDRCIRTTY---VSQRP--VYLGLPANL-VDLTVPA- 178
Query: 240 NQPCKLPSCISSLPKEPD--ELALRQTLKLIVESKNPVLCVGGGC--LNSSEELRKFVGL 295
P +S P +P+ E + L+LI E+KNPV+ C ++ E +K + L
Sbjct: 179 -SLLDTPIDLSLKPNDPEAEEEVIENVLQLIKEAKNPVILADACCSRHDAKAETKKLIDL 237
Query: 296 TGIPVTCTTMGLGLFPCTDELCLRMVGMF-GTVYA---NYAVNECDLLLAAGVRFNERMT 351
T P T MG G DE R G++ GT+ + AV DL+L+ G ++ T
Sbjct: 238 TQFPAFVTPMGKG---SIDEKHPRFGGVYVGTLSSPAVKEAVESADLVLSVGALLSDFNT 294
Query: 352 SKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383
IV D +I P V +
Sbjct: 295 GSFSYSYKTKNIVEFHSDYTKIRSATFPGVQM 326
>pdb|2NXW|A Chain A, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2NXW|B Chain B, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2Q5J|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5J|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5L|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5L|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5O|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5O|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5Q|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
pdb|2Q5Q|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
Length = 565
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 125/573 (21%), Positives = 212/573 (36%), Gaps = 83/573 (14%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILP----RHEQGGIFAAEGY 126
K A+ ++ AL+ +G +F PG ++ + + I LP HE FAA+
Sbjct: 22 KLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQI---LPLHTLSHEPAVGFAADAA 78
Query: 127 ARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITG-------------QVSQKLL 173
AR S T GV V+ G G N++ + AY++ P++ I+G + L
Sbjct: 79 ARYSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTL 138
Query: 174 GTD--AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPG--PVLIDIPVD 229
T F+EI V + +DD + E + + R PV ++IP +
Sbjct: 139 DTQFQVFKEITVAQAR------------LDDPAKAPAEIARVLGAARAQSRPVYLEIPRN 186
Query: 230 VQLELAVPNWNQPCKLPSCISSLPKEPDELAL--RQTLKLIVESKNPVL--CVGGGCLNS 285
+ P + P + P + D LA + L + + +PVL CV
Sbjct: 187 MVNAEVEPVGDDP--------AWPVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGL 238
Query: 286 SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCL-RMVGMFGTVYANYAVNECDLLLAAGV 344
++ + G+PV T MG GL L +G+ G V E D L G
Sbjct: 239 EAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGA 298
Query: 345 RFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVG 404
++ + + K +H + +G D+ + + R+
Sbjct: 299 ILSDTNFAVSQRKIDLRKTIHAFDRAVTLGYHTYADIPLAGLVDALLERLP--------- 349
Query: 405 FMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNEL--TDDEETIISTGVGQHQ 462
+ R ++ YP + GE I P + +N+ E +I+ +G
Sbjct: 350 -----PSDRTTRGKEPHAYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCL 404
Query: 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELA 522
A+ L+ + MGFG+ ++ + GDG+F M EL
Sbjct: 405 FTAMDMIDAG----LMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELG 460
Query: 523 AIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACG 582
+ I ++L NN M R F+ A + L D F DM A G
Sbjct: 461 NCRRLGIDPIVILFNNASWEML-----RTFQPESAFNDLDD-----WRFADM---AAGMG 507
Query: 583 IPAARVTKKKDVRAAIQLMLETPGPY-LLDVMV 614
RV + +++AA+ T G + L++ M+
Sbjct: 508 GDGVRVRTRAELKAALDKAFATRGRFQLIEAMI 540
>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
pdb|1QPB|B Chain B, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
Length = 563
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 149/354 (42%), Gaps = 43/354 (12%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYARSSGTPG 134
+ E L++ V TVF PG ++ + + +R +E +AA+GYAR G
Sbjct: 10 LFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMS- 68
Query: 135 VCLVSS-GPGVTNIMTGLMDAYSDSIPIL------AITGQVSQKL----LGTDAFQEIPV 183
C++++ G G + + G+ +Y++ + +L +I+ Q Q L LG F
Sbjct: 69 -CIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFH- 126
Query: 184 VEVTRYMTKHNYLVLDVDDIP----RIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNW 239
++ +++ ++ D+ P R I+ + PV + +P ++ ++L VP
Sbjct: 127 -RMSANISETTAMITDIATAPAEIDRCIRTTYVTQR-----PVYLGLPANL-VDLNVP-- 177
Query: 240 NQPCKLPSCISSLPK--EPDELALRQTLKLIVESKNPVLCVGGGC--LNSSEELRKFVGL 295
+ + P +S P E ++ + L LI ++KNPV+ C + E +K + L
Sbjct: 178 AKLLQTPIDMSLKPNDAESEKEVIDTILVLIKDAKNPVILADACCSRHDVKAETKKLIDL 237
Query: 296 TGIPVTCTTMGLGLFPCTDELCLRMVGMF-GTVY---ANYAVNECDLLLAAGVRFNERMT 351
T P T MG G DE R G++ GT+ AV DL+L+ G ++ T
Sbjct: 238 TQFPAFVTPMGKG---SIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNT 294
Query: 352 SKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGF 405
IV D +I P V + K V ++ + G+
Sbjct: 295 GSFSYSYKTKNIVEFHSDHMKIRNATFPGVQM----KFVLQKLLTAIADAAKGY 344
>pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
Length = 563
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 151/353 (42%), Gaps = 45/353 (12%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYARSSGTPG 134
+ E L++ V TVF PG ++ + + +R +E +AA+GYAR G
Sbjct: 10 LFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMS- 68
Query: 135 VCLVSS-GPGVTNIMTGLMDAYSDSIPIL------AITGQVSQKL----LGTDAFQEIPV 183
C++++ G G + + G+ +Y++ + +L +I+ Q Q L LG F
Sbjct: 69 -CIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFH- 126
Query: 184 VEVTRYMTKHNYLVLDVDDIP----RIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNW 239
++ +++ ++ D+ P R I+ + PV + +P ++ ++L VP
Sbjct: 127 -RMSANISETTAMITDIATAPAEIDRCIRTTYVTQR-----PVYLGLPANL-VDLNVP-- 177
Query: 240 NQPCKLPSCISSLPK--EPDELALRQTLKLIVESKNPVLCVGGGC--LNSSEELRKFVGL 295
+ + P +S P E ++ + L L+ ++KNPV+ C + E +K + L
Sbjct: 178 AKLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDL 237
Query: 296 TGIPVTCTTMGLGLFPCTDELCLRMVGMF-GTVY---ANYAVNECDLLLAAGVRFNERMT 351
T P T MG G DE R G++ GT+ AV DL+L+ G ++ T
Sbjct: 238 TQFPAFVTPMGKG---SIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNT 294
Query: 352 SKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRM--NMILESKG 402
IV D +I P V + K V ++ N+ +KG
Sbjct: 295 GSFSYSYKTKNIVEFHSDHMKIRNATFPGVQM----KFVLQKLLTNIADAAKG 343
>pdb|1OVM|A Chain A, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|B Chain B, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|C Chain C, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|D Chain D, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
Length = 552
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 139/333 (41%), Gaps = 52/333 (15%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSG 131
AD +++ L G +F PG +++ + S +I + +E +AA+GYAR G
Sbjct: 8 ADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKG 67
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT----------GQVSQKLLGTDAFQEI 181
+ L + G G + M G+ +Y++ +P+L I G++ LG F+
Sbjct: 68 FAAL-LTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHF 126
Query: 182 -----PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAV 236
P+ +T+ N +I R++ + RPG ++ +P DV + A
Sbjct: 127 YHMSEPITVAQAVLTEQNACY----EIDRVLTT---MLRERRPGYLM--LPADVAKKAAT 177
Query: 237 PNWN-----QPCKLPSCISSL-PKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELR 290
P N Q +C+ + ++LA+ + L+ + L + G ++ L+
Sbjct: 178 PPVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLAD----FLVLRHGLKHA---LQ 230
Query: 291 KFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANY-------AVNECDLLLAAG 343
K+V + MG G+F DE R G +GT + A+ D +L G
Sbjct: 231 KWVKEVPMAHATMLMGKGIF---DE---RQAGFYGTYSGSASTGAVKEAIEGADTVLCVG 284
Query: 344 VRFNERMTSKLEDFATRAKIVHIDIDSNEIGKV 376
RF + +T+ T A+ + + + +G V
Sbjct: 285 TRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDV 317
>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
Length = 563
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 43/354 (12%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYARSSGTPG 134
+ E L++ V TVF PG ++ + + +R +E +AA+GYAR G
Sbjct: 10 LFERLKQVNVNTVFGLPGAFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMS- 68
Query: 135 VCLVSS-GPGVTNIMTGLMDAYSDSIPIL------AITGQVSQKL----LGTDAFQEIPV 183
C++++ G G + + G+ +Y++ + +L +I+ Q Q L LG F
Sbjct: 69 -CIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFH- 126
Query: 184 VEVTRYMTKHNYLVLDVDDIP----RIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNW 239
++ +++ ++ D+ P R I+ + PV + +P ++ ++L VP
Sbjct: 127 -RMSANISETTAMITDIATAPAEIDRCIRTTYVTQR-----PVYLGLPANL-VDLNVP-- 177
Query: 240 NQPCKLPSCISSLPK--EPDELALRQTLKLIVESKNPVLCVGGGC--LNSSEELRKFVGL 295
+ + P +S P E ++ + L L ++KNPV+ C + E +K + L
Sbjct: 178 AKLLQTPIDMSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDL 237
Query: 296 TGIPVTCTTMGLGLFPCTDELCLRMVGMF-GTVY---ANYAVNECDLLLAAGVRFNERMT 351
T P T MG G DE R G++ GT+ AV DL+L+ G ++ T
Sbjct: 238 TQFPAFVTPMGKG---SIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNT 294
Query: 352 SKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGF 405
IV D +I P V + K V ++ + G+
Sbjct: 295 GSFSYSYKTKNIVEFHSDHMKIRNATFPGVQM----KFVLQKLLTAIADAAKGY 344
>pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
Length = 563
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 43/354 (12%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYARSSGTPG 134
+ E L++ V TVF PG ++ + + +R +E +AA+GYAR G
Sbjct: 10 LFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMS- 68
Query: 135 VCLVSS-GPGVTNIMTGLMDAYSDSIPIL------AITGQVSQKL----LGTDAFQEIPV 183
C++++ G G + + G+ +Y++ + +L +I+ Q Q L LG F
Sbjct: 69 -CIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFH- 126
Query: 184 VEVTRYMTKHNYLVLDVDDIP----RIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNW 239
++ +++ ++ D+ P R I+ + PV + +P ++ ++L VP
Sbjct: 127 -RMSANISETTAMITDIATAPAEIDRCIRTTYVTQR-----PVYLGLPANL-VDLNVP-- 177
Query: 240 NQPCKLPSCISSLPK--EPDELALRQTLKLIVESKNPVLCVGGGC--LNSSEELRKFVGL 295
+ + P +S P E ++ + L L ++KNPV+ C + E +K + L
Sbjct: 178 AKLLQTPIDMSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDL 237
Query: 296 TGIPVTCTTMGLGLFPCTDELCLRMVGMF-GTVY---ANYAVNECDLLLAAGVRFNERMT 351
T P T MG G DE R G++ GT+ AV DL+L+ G ++ T
Sbjct: 238 TQFPAFVTPMGKG---SIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNT 294
Query: 352 SKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGF 405
IV D +I P V + K V ++ + G+
Sbjct: 295 GSFSYSYKTKNIVEFHSDHMKIRNATFPGVQM----KFVLQKLLTTIADAAKGY 344
>pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
pdb|1PVD|B Chain B, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
Length = 555
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 150/353 (42%), Gaps = 45/353 (12%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYARSSGTPG 134
+ E L++ V TVF PG ++ + + +R +E +AA+GYAR G
Sbjct: 9 LFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMS- 67
Query: 135 VCLVSS-GPGVTNIMTGLMDAYSDSIPIL------AITGQVSQKL----LGTDAFQEIPV 183
C++++ G G + + G+ +Y++ + +L +I+ Q Q L LG F
Sbjct: 68 -CIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFH- 125
Query: 184 VEVTRYMTKHNYLVLDVDDIP----RIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNW 239
++ +++ ++ D+ P R I+ + PV + +P ++ ++L VP
Sbjct: 126 -RMSANISETTAMITDIATAPAEIDRCIRTTYVTQR-----PVYLGLPANL-VDLNVP-- 176
Query: 240 NQPCKLPSCISSLPK--EPDELALRQTLKLIVESKNPVLCVGGGC--LNSSEELRKFVGL 295
+ + P +S P E ++ + L L+ ++KNPV+ C + E +K + L
Sbjct: 177 AKLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDL 236
Query: 296 TGIPVTCTTMGLGLFPCTDELCLRMVGMF-GTVY---ANYAVNECDLLLAAGVRFNERMT 351
T P T MG G E R G++ GT+ AV DL+L+ G ++ T
Sbjct: 237 TQFPAFVTPMGKG---SISEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNT 293
Query: 352 SKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRM--NMILESKG 402
IV D +I P V + K V ++ N+ +KG
Sbjct: 294 GSFSYSYKTKNIVEFHSDHMKIRNATFPGVQM----KFVLQKLLTNIADAAKG 342
>pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
pdb|1PYD|B Chain B, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
Length = 556
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 150/353 (42%), Gaps = 45/353 (12%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYARSSGTPG 134
+ E L++ V TVF PG ++ + + +R +E +AA+GYAR G
Sbjct: 10 LFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMS- 68
Query: 135 VCLVSS-GPGVTNIMTGLMDAYSDSIPIL------AITGQVSQKL----LGTDAFQEIPV 183
C++++ G G + + G+ +Y++ + +L +I+ Q Q L LG F
Sbjct: 69 -CIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFH- 126
Query: 184 VEVTRYMTKHNYLVLDVDDIP----RIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNW 239
++ +++ ++ D+ P R I+ + PV + +P ++ ++L VP
Sbjct: 127 -RMSANISETTAMITDIATAPAEIDRCIRTTYVTQR-----PVYLGLPANL-VDLNVP-- 177
Query: 240 NQPCKLPSCISSLPK--EPDELALRQTLKLIVESKNPVLCVGGGC--LNSSEELRKFVGL 295
+ + P +S P E ++ + L L+ ++KNPV+ C + E +K + L
Sbjct: 178 AKLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDL 237
Query: 296 TGIPVTCTTMGLGLFPCTDELCLRMVGMF-GTVY---ANYAVNECDLLLAAGVRFNERMT 351
T P T MG G E R G++ GT+ AV DL+L+ G ++ T
Sbjct: 238 TQFPAFVTPMGKG---SISEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNT 294
Query: 352 SKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRM--NMILESKG 402
IV D +I P V + K V ++ N+ +KG
Sbjct: 295 GSFSYSYKTKNIVEFHSDHMKIRNATFPGVQM----KFVLQKLLTNIADAAKG 343
>pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|B Chain B, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|E Chain E, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|F Chain F, Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 117/534 (21%), Positives = 201/534 (37%), Gaps = 61/534 (11%)
Query: 121 FAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT----------GQVSQ 170
F+AEGYAR+ +V+ G + + AY++++P++ I+ G V
Sbjct: 55 FSAEGYARAK-GAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLH 113
Query: 171 KLLG-TDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229
LG TD ++ E+ + +T + ++ P I A + PV ++I +
Sbjct: 114 HALGKTDYHYQL---EMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKK-PVYLEIACN 169
Query: 230 VQLELAVPNWNQPCKLPSCISSL--PKEPDELALR----QTLKLIVESKNPVLCVGGG-- 281
+ + PC P S+L + DE +L +TLK I + VG
Sbjct: 170 IA--------SMPCAAPGPASALFNDEASDEASLNAAVDETLKFIANRDKVAVLVGSKLR 221
Query: 282 CLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVY---ANYAVNECDL 338
+ E KF G V FP +E L + +G V + E D
Sbjct: 222 AAGAEEAAVKFTDALGGAVATMAAAKSFFP--EENALYIGTSWGEVSYPGVEKTMKEADA 279
Query: 339 LLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398
++A FN+ T+ D K+V + S + ++ P V + K R+ +
Sbjct: 280 VIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHL----KDYLTRLAQKV 335
Query: 399 ESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGV 458
K F S EL + P S EI A Q+ LT + I TG
Sbjct: 336 SKKTGSLDFFKSLNAGELKKAAPADP-SAPLVNAEI----ARQVEALLTPNTTVIAETGD 390
Query: 459 GQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNL 518
++ R + +G +G+ + + + GDGSF +
Sbjct: 391 SWFNAQRMKLPNGARVEYEMQ---WGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTA 447
Query: 519 QELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFA 578
QE+A + +PV I LINN + V D + + + G E+F +
Sbjct: 448 QEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAG----LMEVFNGNGGYD 503
Query: 579 EACGIPAARVTKKK---DVRAAIQLML-ETPGPYLLDVMVSYQEHVVPMIPYDK 628
AA+ K K ++ AI++ L T GP L++ + ++ ++ + K
Sbjct: 504 SG----AAKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGK 553
>pdb|3OE1|A Chain A, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|B Chain B, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|C Chain C, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|D Chain D, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
Length = 568
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 113/531 (21%), Positives = 198/531 (37%), Gaps = 55/531 (10%)
Query: 121 FAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT----------GQVSQ 170
F+AEGYAR+ +V+ G + + AY++++P++ I+ G V
Sbjct: 55 FSAEGYARAK-GAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLH 113
Query: 171 KLLG-TDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229
LG TD ++ E+ + +T + ++ P I A + PV ++I +
Sbjct: 114 HALGKTDYHYQL---EMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKK-PVYLEIACN 169
Query: 230 VQLELAVPNWNQPCKLPSCISSL--PKEPDE----LALRQTLKLIVESKNPVLCVGGG-- 281
+ + PC P S+L + DE A+ +TLK I + VG
Sbjct: 170 IA--------SMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLR 221
Query: 282 CLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVY---ANYAVNECDL 338
+ E KF G V FP +E + +G V + E D
Sbjct: 222 AAGAEEAAVKFADALGGAVATMAAAKSFFP--EENPHYIGTSWGEVSYPGVEKTMKEADA 279
Query: 339 LLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398
++A FN+ T+ D K+V + S + ++ P V + K R+ +
Sbjct: 280 VIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHL----KDYLTRLAQKV 335
Query: 399 ESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGV 458
K F S EL + P S EI A Q+ LT + I TG
Sbjct: 336 SKKTGALDFFKSLNAGELKKAAPADP-SAPLVNAEI----ARQVEALLTPNTTVIAETGD 390
Query: 459 GQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNL 518
++ R + +G +G+ + + + GDGSF +
Sbjct: 391 SWFNAQRMKLPNGARVEYEMQ---WGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTA 447
Query: 519 QELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFA 578
QE+A + +PV I LINN ++V D + + + G E+F +
Sbjct: 448 QEVAQMVRLKLPVIIFLINNYGYTIDVMIHDGPYNNIKNWDYAG----LMEVFNGNGGYD 503
Query: 579 EACGIPAARVTKKKDVRAAIQLML-ETPGPYLLDVMVSYQEHVVPMIPYDK 628
G + ++ AI++ L T GP L++ + ++ ++ + K
Sbjct: 504 SGAG-KGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGK 553
>pdb|2WVA|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 113/531 (21%), Positives = 197/531 (37%), Gaps = 55/531 (10%)
Query: 121 FAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT----------GQVSQ 170
F+AEGYAR+ +V+ G + + AY++++P++ I+ G V
Sbjct: 55 FSAEGYARAK-GAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLH 113
Query: 171 KLLG-TDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229
LG TD ++ E+ + +T + ++ P I A + PV ++I +
Sbjct: 114 HALGKTDYHYQL---EMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKK-PVYLEIACN 169
Query: 230 VQLELAVPNWNQPCKLPSCISSL--PKEPDE----LALRQTLKLIVESKNPVLCVGGG-- 281
+ + PC P S+L + DE A+ +TLK I + VG
Sbjct: 170 IA--------SMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLR 221
Query: 282 CLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVY---ANYAVNECDL 338
+ E KF G V FP +E + +G V + E D
Sbjct: 222 AAGAEEAAVKFADALGGAVATMAAAKSFFP--EENPHYIGTSWGEVSYPGVEKTMKEADA 279
Query: 339 LLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398
++A FN+ T+ D K+V + S + ++ P V + K R+ +
Sbjct: 280 VIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHL----KDYLTRLAQKV 335
Query: 399 ESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGV 458
K F S EL + P S EI A Q+ LT + I TG
Sbjct: 336 SKKTGALDFFKSLNAGELKKAAPADP-SAPLVNAEI----ARQVEALLTPNTTVIAETGD 390
Query: 459 GQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNL 518
++ R + +G +G+ + + + GDGSF +
Sbjct: 391 SWFNAQRMKLPNGARVEYEMQ---WGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTA 447
Query: 519 QELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFA 578
QE+A + +PV I LINN + V D + + + G E+F +
Sbjct: 448 QEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAG----LMEVFNGNGGYD 503
Query: 579 EACGIPAARVTKKKDVRAAIQLML-ETPGPYLLDVMVSYQEHVVPMIPYDK 628
G + ++ AI++ L T GP L++ + ++ ++ + K
Sbjct: 504 SGAG-KGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGK 553
>pdb|2JLC|A Chain A, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Native Protein
pdb|2JLC|B Chain B, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Native Protein
Length = 577
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRH--EQGGIFAAEGYA 127
R+ A +I+EAL R GV + PG S + + N I H E+G A G A
Sbjct: 29 RRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAA-ENSAFIHHTHFDERGLGHLALGLA 87
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEI 181
+ S P +V+SG V N+ L++A ++ +T +L+ A Q I
Sbjct: 88 KVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQAI 141
>pdb|3FLM|A Chain A, Crystal Structure Of Mend From E.Coli
pdb|3FLM|B Chain B, Crystal Structure Of Mend From E.Coli
pdb|3HWW|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWW|D Chain D, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWX|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|B Chain B, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|I Chain I, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|J Chain J, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|R Chain R, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|S Chain S, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|Z Chain Z, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|1 Chain 1, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
Length = 556
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRH--EQGGIFAAEGYA 127
R+ A +I+EAL R GV + PG S + + N I H E+G A G A
Sbjct: 8 RRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAA-ENSAFIHHTHFDERGLGHLALGLA 66
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEI 181
+ S P +V+SG V N+ L++A ++ +T +L+ A Q I
Sbjct: 67 KVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQAI 120
>pdb|2JLA|A Chain A, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|B Chain B, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|C Chain C, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|D Chain D, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
Length = 558
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRH--EQGGIFAAEGYA 127
R+ A +I+EAL R GV + PG S + + N I H E+G A G A
Sbjct: 10 RRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAA-ENSAFIHHTHFDERGLGHLALGLA 68
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEI 181
+ S P +V+SG V N+ L++A ++ +T +L+ A Q I
Sbjct: 69 KVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQAI 122
>pdb|3LQ1|A Chain A, Crystal Structure Of
2-Succinyl-6-Hydroxy-2,4-Cyclohexadiene 1-Carboxylic
Acid Synthase2-Oxoglutarate Decarboxylase From Listeria
Monocytogenes Str. 4b F2365
pdb|3LQ1|B Chain B, Crystal Structure Of
2-Succinyl-6-Hydroxy-2,4-Cyclohexadiene 1-Carboxylic
Acid Synthase2-Oxoglutarate Decarboxylase From Listeria
Monocytogenes Str. 4b F2365
Length = 578
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Query: 77 VEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSI-LPRHEQGGIFAAEGYARSSGTPGV 135
+E L + GV PG S + + I I + E+ F A G A++S P V
Sbjct: 18 IEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVV 77
Query: 136 CLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEI 181
L +SG N + +A IP++ +T +L A Q +
Sbjct: 78 LLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAPQAM 123
>pdb|2X7J|A Chain A, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|B Chain B, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|C Chain C, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|D Chain D, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
Length = 604
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 116 EQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT 175
E+ F A G A++ P + + +SG N +++A+ +PI+ +T +L
Sbjct: 78 ERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREV 137
Query: 176 DAFQEIPVVEVTRYMTKHNYLVLDVD-----DIPRIIKEAFFIATSG------RP-GPVL 223
A Q I ++ N++ D + P++++ +A+ RP GPV
Sbjct: 138 GAPQAI-----NQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVH 192
Query: 224 IDIPV 228
+++P+
Sbjct: 193 VNVPL 197
>pdb|4HXZ|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HXZ|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HY1|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HY1|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYM|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYM|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 390
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 94 GASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMD 153
G ++IH S I I+ + GG F+ + Y S G GV G V N ++ ++
Sbjct: 72 GMPVDIHPEHKMSGIELIMTKLHSGGKFSNKNYTHSGGLHGV-----GVSVVNALSTRLE 126
Query: 154 A 154
A
Sbjct: 127 A 127
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 39 LHVTNSTLNIPTSTAPFQQTDFSSRFAPDKPRKGAD--IIVEALERQGVTTVFAYPGGA 95
+ +TN L P P T FS R+ K D II + E+QG+ T+ PG A
Sbjct: 10 VDLTNYLLTHPHELIPL--TFFSERYESAKSSISEDLTIIKQTFEQQGIGTLLTVPGAA 66
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 39 LHVTNSTLNIPTSTAPFQQTDFSSRFAPDKPRKGAD--IIVEALERQGVTTVFAYPGGA 95
+ +TN L P P T FS R+ K D II + E+QG+ T+ PG A
Sbjct: 10 VDLTNYLLTHPHELIPL--TFFSERYESAKSSISEDLTIIKQTFEQQGIGTLLTVPGAA 66
>pdb|3GRC|A Chain A, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|B Chain B, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|C Chain C, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|D Chain D, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
Length = 140
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 379 PDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQY 438
P + IC D + +N+ LE KG GF D + EQ + P++ T +P Q
Sbjct: 7 PRILICEDDPDIARLLNLXLE-KG-GFDSDXVHSAAQALEQVARRPYAAXTVDLNLPDQD 64
Query: 439 AIQILNELTDDEET 452
+ ++ L D T
Sbjct: 65 GVSLIRALRRDSRT 78
>pdb|2EBM|A Chain A, Solution Structure Of The Rwd Domain Of Human Rwd Domain
Containing Protein 1
Length = 128
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 400 SKGVGFMFDF-SAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIST 456
S G M D+ R EL + YP S+ E PP + I + +E +++ET+ +T
Sbjct: 2 SSGSSGMTDYGEEQRNELEALESIYPDSFTVLSEN-PPSFTITVTSEAGENDETVQTT 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,916,719
Number of Sequences: 62578
Number of extensions: 789915
Number of successful extensions: 2193
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1995
Number of HSP's gapped (non-prelim): 74
length of query: 643
length of database: 14,973,337
effective HSP length: 105
effective length of query: 538
effective length of database: 8,402,647
effective search space: 4520624086
effective search space used: 4520624086
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)