Query 040733
Match_columns 643
No_of_seqs 261 out of 1616
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 11:14:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4166 Thiamine pyrophosphate 100.0 1E-126 2E-131 958.2 42.5 577 55-642 73-674 (675)
2 COG0028 IlvB Thiamine pyrophos 100.0 3E-116 7E-121 972.9 59.3 543 69-631 1-547 (550)
3 PLN02470 acetolactate synthase 100.0 3E-110 7E-115 945.4 65.2 583 58-642 1-584 (585)
4 PRK08979 acetolactate synthase 100.0 6E-106 1E-110 908.3 63.6 552 69-630 3-561 (572)
5 PRK07979 acetolactate synthase 100.0 1E-105 2E-110 907.3 63.4 563 69-641 3-574 (574)
6 PRK06965 acetolactate synthase 100.0 2E-105 4E-110 906.5 63.2 559 62-630 13-577 (587)
7 TIGR01504 glyox_carbo_lig glyo 100.0 4E-105 9E-110 902.3 62.6 547 69-620 2-560 (588)
8 PRK09107 acetolactate synthase 100.0 8E-105 2E-109 900.8 63.1 552 68-628 9-567 (595)
9 PRK06466 acetolactate synthase 100.0 2E-104 5E-109 896.9 63.5 554 69-632 3-565 (574)
10 PRK07418 acetolactate synthase 100.0 4E-104 8E-109 900.4 64.8 552 63-627 12-571 (616)
11 PRK07282 acetolactate synthase 100.0 2E-104 5E-109 893.9 60.5 544 68-628 8-554 (566)
12 PRK08978 acetolactate synthase 100.0 4E-104 9E-109 891.0 61.0 536 70-628 1-538 (548)
13 PRK06456 acetolactate synthase 100.0 8E-104 2E-108 893.1 63.4 561 70-642 2-571 (572)
14 PRK06725 acetolactate synthase 100.0 1E-103 2E-108 887.6 61.5 543 69-628 14-558 (570)
15 PRK07710 acetolactate synthase 100.0 2E-103 3E-108 889.4 62.2 549 67-630 13-563 (571)
16 PRK06048 acetolactate synthase 100.0 2E-103 5E-108 886.2 63.1 543 68-627 6-550 (561)
17 PRK08527 acetolactate synthase 100.0 2E-103 5E-108 886.7 62.8 549 69-630 2-553 (563)
18 PRK07789 acetolactate synthase 100.0 7E-103 2E-107 889.3 63.9 556 67-628 28-589 (612)
19 PRK11269 glyoxylate carboligas 100.0 1E-102 2E-107 885.0 62.3 546 69-619 3-560 (591)
20 CHL00099 ilvB acetohydroxyacid 100.0 3E-102 6E-107 880.5 63.3 552 65-627 5-567 (585)
21 PRK08155 acetolactate synthase 100.0 3E-102 6E-107 878.4 62.4 542 69-628 12-556 (564)
22 TIGR03457 sulphoacet_xsc sulfo 100.0 1E-101 3E-106 875.3 61.4 535 69-618 1-560 (579)
23 PRK06882 acetolactate synthase 100.0 2E-101 5E-106 873.2 62.4 551 70-630 4-561 (574)
24 PRK08273 thiamine pyrophosphat 100.0 3E-101 6E-106 874.2 60.0 532 69-618 2-549 (597)
25 TIGR00118 acolac_lg acetolacta 100.0 6E-101 1E-105 867.0 62.0 547 70-629 1-550 (558)
26 TIGR02418 acolac_catab acetola 100.0 6E-101 1E-105 863.8 60.7 531 72-620 1-535 (539)
27 PRK08617 acetolactate synthase 100.0 4E-101 1E-105 867.1 59.6 535 67-619 2-540 (552)
28 PRK08322 acetolactate synthase 100.0 8E-101 2E-105 865.0 60.0 529 70-619 1-532 (547)
29 PRK06276 acetolactate synthase 100.0 2E-100 5E-105 865.4 62.6 546 70-628 1-555 (586)
30 PRK05858 hypothetical protein; 100.0 5E-100 1E-104 855.4 61.4 531 66-623 1-537 (542)
31 PRK08611 pyruvate oxidase; Pro 100.0 6E-100 1E-104 859.8 60.4 529 69-622 3-537 (576)
32 PRK09124 pyruvate dehydrogenas 100.0 1.1E-99 2E-104 859.0 60.4 530 68-622 1-537 (574)
33 PRK06154 hypothetical protein; 100.0 3.6E-99 8E-104 850.0 60.6 532 66-618 16-558 (565)
34 PRK06546 pyruvate dehydrogenas 100.0 3.5E-99 8E-104 853.0 59.8 525 69-619 2-534 (578)
35 PRK06457 pyruvate dehydrogenas 100.0 3E-99 7E-104 850.6 58.5 519 70-621 2-525 (549)
36 PRK08199 thiamine pyrophosphat 100.0 6.2E-99 1E-103 850.1 59.8 528 68-618 6-541 (557)
37 PRK07525 sulfoacetaldehyde ace 100.0 1.3E-98 3E-103 851.3 60.6 536 68-618 4-565 (588)
38 TIGR02720 pyruv_oxi_spxB pyruv 100.0 2.8E-98 6E-103 845.9 59.3 527 72-618 1-535 (575)
39 PRK07524 hypothetical protein; 100.0 6.6E-98 1E-102 838.3 59.9 523 70-617 2-531 (535)
40 PRK07064 hypothetical protein; 100.0 9.8E-98 2E-102 839.5 59.0 529 69-624 2-536 (544)
41 TIGR03254 oxalate_oxc oxalyl-C 100.0 1.3E-97 3E-102 838.9 59.7 530 70-619 3-542 (554)
42 PRK09259 putative oxalyl-CoA d 100.0 1.1E-96 2E-101 833.2 60.1 531 68-619 8-550 (569)
43 PRK08266 hypothetical protein; 100.0 1.1E-95 2E-100 822.2 60.3 522 69-620 3-530 (542)
44 PRK06112 acetolactate synthase 100.0 6.3E-96 1E-100 829.1 58.8 538 68-618 12-563 (578)
45 PLN02573 pyruvate decarboxylas 100.0 2.4E-97 5E-102 836.5 45.4 534 67-628 13-565 (578)
46 PRK08327 acetolactate synthase 100.0 9.5E-95 2.1E-99 816.2 55.4 532 68-616 5-568 (569)
47 TIGR03394 indol_phenyl_DC indo 100.0 7.5E-94 1.6E-98 801.9 48.7 514 71-620 1-526 (535)
48 TIGR03393 indolpyr_decarb indo 100.0 2.6E-94 5.7E-99 808.8 44.8 511 70-618 1-530 (539)
49 KOG1185 Thiamine pyrophosphate 100.0 6.6E-93 1.4E-97 727.9 50.6 542 67-620 11-565 (571)
50 PRK07092 benzoylformate decarb 100.0 2.2E-92 4.8E-97 792.2 56.8 515 69-615 11-530 (530)
51 PRK12474 hypothetical protein; 100.0 4E-92 8.7E-97 787.5 57.3 500 67-614 2-518 (518)
52 PRK07586 hypothetical protein; 100.0 9.8E-92 2.1E-96 785.1 56.6 498 70-614 1-514 (514)
53 PRK07449 2-succinyl-5-enolpyru 100.0 2.2E-92 4.8E-97 799.6 40.8 529 69-620 8-554 (568)
54 PLN02980 2-oxoglutarate decarb 100.0 1.3E-84 2.7E-89 800.5 44.0 547 58-619 290-893 (1655)
55 COG3960 Glyoxylate carboligase 100.0 1.6E-82 3.5E-87 622.7 31.3 545 69-619 3-560 (592)
56 COG3961 Pyruvate decarboxylase 100.0 1.4E-79 2.9E-84 638.8 38.4 521 68-620 2-540 (557)
57 TIGR00173 menD 2-succinyl-5-en 100.0 4.8E-74 1E-78 627.5 36.7 416 72-498 2-431 (432)
58 KOG1184 Thiamine pyrophosphate 100.0 3.1E-71 6.8E-76 573.6 35.0 520 69-620 3-544 (561)
59 COG3962 Acetolactate synthase 100.0 5.8E-70 1.3E-74 554.5 42.7 554 67-636 4-592 (617)
60 COG1165 MenD 2-succinyl-6-hydr 100.0 1.5E-59 3.2E-64 495.0 33.8 524 67-619 5-550 (566)
61 cd07039 TPP_PYR_POX Pyrimidine 100.0 3.4E-43 7.4E-48 332.4 18.8 162 71-233 1-163 (164)
62 cd07037 TPP_PYR_MenD Pyrimidin 100.0 7.7E-42 1.7E-46 320.6 17.9 154 75-228 2-162 (162)
63 PF02776 TPP_enzyme_N: Thiamin 100.0 4.3E-40 9.3E-45 315.1 17.9 167 70-236 1-169 (172)
64 cd02006 TPP_Gcl Thiamine pyrop 100.0 1.2E-38 2.6E-43 312.8 22.4 187 432-619 6-198 (202)
65 cd02013 TPP_Xsc_like Thiamine 100.0 1.9E-38 4.1E-43 309.7 22.1 178 432-618 2-182 (196)
66 cd07038 TPP_PYR_PDC_IPDC_like 100.0 3.1E-38 6.8E-43 298.1 16.8 153 74-228 1-162 (162)
67 cd02015 TPP_AHAS Thiamine pyro 100.0 2.2E-37 4.7E-42 300.2 22.9 184 434-625 1-184 (186)
68 cd02010 TPP_ALS Thiamine pyrop 100.0 5.2E-37 1.1E-41 294.5 20.5 174 436-619 1-174 (177)
69 TIGR03336 IOR_alpha indolepyru 100.0 5E-35 1.1E-39 330.8 37.6 492 69-616 4-531 (595)
70 cd02003 TPP_IolD Thiamine pyro 100.0 2.6E-36 5.7E-41 296.7 21.6 190 438-633 3-198 (205)
71 cd02004 TPP_BZL_OCoD_HPCL Thia 100.0 5.3E-35 1.2E-39 280.0 20.5 172 436-615 1-172 (172)
72 cd02014 TPP_POX Thiamine pyrop 100.0 1.1E-34 2.4E-39 279.2 21.2 175 434-618 2-176 (178)
73 cd02009 TPP_SHCHC_synthase Thi 100.0 2E-35 4.4E-40 283.2 15.3 173 435-615 2-175 (175)
74 cd07035 TPP_PYR_POX_like Pyrim 100.0 7.6E-35 1.6E-39 274.2 17.5 155 74-228 1-155 (155)
75 TIGR03297 Ppyr-DeCO2ase phosph 100.0 2.4E-33 5.2E-38 295.4 29.0 327 84-619 1-340 (361)
76 cd02005 TPP_PDC_IPDC Thiamine 100.0 5.4E-34 1.2E-38 275.0 17.8 174 433-620 1-179 (183)
77 cd02002 TPP_BFDC Thiamine pyro 100.0 6.9E-33 1.5E-37 267.0 20.8 177 434-614 1-178 (178)
78 PF02775 TPP_enzyme_C: Thiamin 100.0 7.1E-33 1.5E-37 260.1 15.6 151 457-612 1-153 (153)
79 PRK06163 hypothetical protein; 100.0 2.7E-31 5.8E-36 258.4 19.8 162 432-618 11-176 (202)
80 cd07034 TPP_PYR_PFOR_IOR-alpha 100.0 1.9E-31 4.1E-36 252.4 15.2 151 72-226 1-158 (160)
81 cd02001 TPP_ComE_PpyrDC Thiami 100.0 3.8E-31 8.2E-36 248.4 15.8 154 437-616 2-156 (157)
82 TIGR03846 sulfopy_beta sulfopy 100.0 1.8E-30 3.9E-35 249.3 17.1 163 437-626 2-167 (181)
83 cd06586 TPP_enzyme_PYR Pyrimid 100.0 1.6E-29 3.5E-34 237.6 17.1 153 74-228 1-154 (154)
84 cd00568 TPP_enzymes Thiamine p 100.0 4.2E-29 9.2E-34 238.2 20.0 167 439-614 2-168 (168)
85 cd02008 TPP_IOR_alpha Thiamine 100.0 3.8E-30 8.3E-35 247.5 12.6 168 429-614 5-176 (178)
86 cd03371 TPP_PpyrDC Thiamine py 100.0 1.7E-29 3.7E-34 244.2 16.9 159 437-620 2-168 (188)
87 cd03375 TPP_OGFOR Thiamine pyr 100.0 2.8E-29 6E-34 244.1 15.6 166 438-616 13-185 (193)
88 cd02018 TPP_PFOR Thiamine pyro 100.0 1.2E-29 2.5E-34 254.0 12.2 199 430-635 7-221 (237)
89 cd03372 TPP_ComE Thiamine pyro 100.0 1E-28 2.3E-33 237.1 15.7 162 437-625 2-165 (179)
90 cd03376 TPP_PFOR_porB_like Thi 100.0 2.8E-29 6.1E-34 250.7 12.1 183 430-616 7-201 (235)
91 PRK09628 oorB 2-oxoglutarate-a 100.0 1.3E-27 2.8E-32 242.5 16.6 174 432-617 24-203 (277)
92 TIGR03845 sulfopyru_alph sulfo 99.9 3.6E-27 7.8E-32 220.4 13.6 147 74-230 2-156 (157)
93 PRK11867 2-oxoglutarate ferred 99.9 6.2E-27 1.3E-31 239.2 14.8 173 429-616 18-203 (286)
94 PRK05778 2-oxoglutarate ferred 99.9 2.4E-26 5.1E-31 235.7 16.6 169 433-615 27-203 (301)
95 PRK11866 2-oxoacid ferredoxin 99.9 6E-26 1.3E-30 230.0 17.1 173 429-615 8-192 (279)
96 PRK11869 2-oxoacid ferredoxin 99.9 9.1E-26 2E-30 228.5 17.2 174 430-615 10-193 (280)
97 PF00205 TPP_enzyme_M: Thiamin 99.9 1E-25 2.2E-30 207.6 12.5 134 261-394 1-137 (137)
98 TIGR02177 PorB_KorB 2-oxoacid: 99.9 3.1E-25 6.7E-30 225.4 16.1 155 448-615 27-186 (287)
99 COG4231 Indolepyruvate ferredo 99.9 1.7E-19 3.8E-24 194.2 27.3 489 69-610 15-549 (640)
100 PRK09193 indolepyruvate ferred 99.8 1.8E-16 3.9E-21 185.7 31.3 484 69-610 27-612 (1165)
101 PRK13030 2-oxoacid ferredoxin 99.8 1.1E-15 2.4E-20 179.7 33.5 489 69-610 19-598 (1159)
102 cd02012 TPP_TK Thiamine pyroph 99.7 4.8E-17 1E-21 165.5 12.6 121 482-620 103-232 (255)
103 PRK13029 2-oxoacid ferredoxin 99.7 9.6E-15 2.1E-19 170.9 32.1 484 69-610 30-626 (1186)
104 TIGR03181 PDH_E1_alph_x pyruva 99.7 7.3E-17 1.6E-21 170.2 12.6 119 481-618 119-249 (341)
105 cd02000 TPP_E1_PDC_ADC_BCADC T 99.7 1.4E-16 2.9E-21 165.4 13.5 119 481-618 101-231 (293)
106 TIGR03182 PDH_E1_alph_y pyruva 99.7 1.7E-16 3.7E-21 165.8 12.1 118 481-617 107-236 (315)
107 CHL00149 odpA pyruvate dehydro 99.7 5.7E-16 1.2E-20 163.0 12.1 118 481-618 125-262 (341)
108 PRK05899 transketolase; Review 99.6 1.9E-15 4.2E-20 172.6 9.3 119 483-620 117-253 (624)
109 PLN02374 pyruvate dehydrogenas 99.5 8.4E-14 1.8E-18 149.9 12.4 118 481-618 191-328 (433)
110 PRK11865 pyruvate ferredoxin o 99.5 2.1E-13 4.5E-18 139.4 14.6 179 430-615 20-211 (299)
111 PRK11864 2-ketoisovalerate fer 99.4 9.7E-13 2.1E-17 134.4 13.5 178 431-615 21-207 (300)
112 PRK00945 acetyl-CoA decarbonyl 99.4 8.9E-13 1.9E-17 123.4 10.3 104 261-367 24-141 (171)
113 TIGR00315 cdhB CO dehydrogenas 99.4 8.5E-13 1.8E-17 122.7 9.4 104 261-367 17-133 (162)
114 cd02007 TPP_DXS Thiamine pyrop 99.4 2.1E-12 4.5E-17 125.8 11.6 110 483-617 74-192 (195)
115 PRK05444 1-deoxy-D-xylulose-5- 99.3 7.3E-12 1.6E-16 142.0 12.2 123 482-620 115-247 (580)
116 COG1013 PorB Pyruvate:ferredox 99.2 8.3E-11 1.8E-15 120.7 11.0 174 431-615 18-204 (294)
117 PRK07119 2-ketoisovalerate fer 99.0 1.2E-07 2.6E-12 100.8 25.7 155 69-229 6-172 (352)
118 PRK12571 1-deoxy-D-xylulose-5- 99.0 3.2E-09 6.9E-14 121.2 13.2 138 482-620 121-288 (641)
119 TIGR03710 OAFO_sf 2-oxoacid:ac 98.9 1.3E-07 2.9E-12 106.6 24.1 157 69-230 195-362 (562)
120 PRK08659 2-oxoglutarate ferred 98.9 2.8E-08 6.1E-13 106.3 16.7 156 69-228 6-171 (376)
121 PRK09627 oorA 2-oxoglutarate-a 98.9 4.6E-08 1E-12 104.4 16.1 156 69-229 5-171 (375)
122 PLN02790 transketolase 98.9 1.2E-08 2.7E-13 116.8 11.8 118 483-619 104-242 (654)
123 PF00676 E1_dh: Dehydrogenase 98.8 1.8E-08 3.8E-13 104.8 10.2 116 484-618 101-228 (300)
124 cd03377 TPP_PFOR_PNO Thiamine 98.8 6.5E-08 1.4E-12 100.8 13.8 184 429-615 7-267 (365)
125 PRK12315 1-deoxy-D-xylulose-5- 98.8 6.5E-08 1.4E-12 109.5 14.4 130 482-621 111-249 (581)
126 PTZ00089 transketolase; Provis 98.7 5.3E-08 1.2E-12 111.8 11.2 117 483-618 115-252 (661)
127 COG1071 AcoA Pyruvate/2-oxoglu 98.7 1.2E-07 2.5E-12 98.9 12.1 119 481-618 133-264 (358)
128 PRK08366 vorA 2-ketoisovalerat 98.7 4.2E-07 9.1E-12 97.5 16.3 152 69-226 5-164 (390)
129 TIGR00232 tktlase_bact transke 98.7 9.8E-08 2.1E-12 109.5 12.0 118 483-619 109-246 (653)
130 PRK09622 porA pyruvate flavodo 98.7 4.4E-07 9.6E-12 98.3 16.1 156 69-229 12-176 (407)
131 PRK12754 transketolase; Review 98.7 1.2E-07 2.6E-12 108.0 12.2 118 483-619 113-250 (663)
132 PF01855 POR_N: Pyruvate flavo 98.7 1.3E-07 2.7E-12 94.3 10.8 149 79-230 2-156 (230)
133 PRK12753 transketolase; Review 98.7 1.4E-07 3E-12 108.2 12.0 119 482-619 112-250 (663)
134 PRK08367 porA pyruvate ferredo 98.6 6.8E-07 1.5E-11 96.1 16.4 155 69-228 6-169 (394)
135 cd02016 TPP_E1_OGDC_like Thiam 98.6 1.8E-07 4E-12 94.2 10.9 117 482-617 111-248 (265)
136 PLN02269 Pyruvate dehydrogenas 98.6 1.9E-07 4.1E-12 99.1 11.4 115 482-617 136-261 (362)
137 PF00456 Transketolase_N: Tran 98.6 1E-07 2.2E-12 100.0 6.9 118 483-619 110-247 (332)
138 COG4032 Predicted thiamine-pyr 98.5 7.8E-07 1.7E-11 78.5 9.7 160 68-231 2-166 (172)
139 TIGR00204 dxs 1-deoxy-D-xylulo 98.5 1.6E-06 3.4E-11 99.0 13.7 136 482-622 109-281 (617)
140 cd02017 TPP_E1_EcPDC_like Thia 98.3 1.5E-06 3.3E-11 91.6 9.3 119 484-619 118-321 (386)
141 PLN02234 1-deoxy-D-xylulose-5- 98.3 6.7E-06 1.4E-10 93.1 13.5 141 482-623 175-329 (641)
142 PF13292 DXP_synthase_N: 1-deo 98.3 2.1E-06 4.5E-11 85.3 8.0 174 436-614 46-270 (270)
143 PLN02582 1-deoxy-D-xylulose-5- 98.3 9.6E-06 2.1E-10 92.6 14.2 141 483-623 143-328 (677)
144 COG3959 Transketolase, N-termi 98.2 1.3E-05 2.8E-10 77.1 11.9 113 484-614 119-240 (243)
145 COG0021 TktA Transketolase [Ca 98.2 8.4E-06 1.8E-10 89.6 11.5 117 483-618 115-251 (663)
146 cd02011 TPP_PK Thiamine pyroph 98.2 8.5E-06 1.8E-10 80.2 9.6 99 484-599 62-167 (227)
147 PRK09404 sucA 2-oxoglutarate d 98.1 1.4E-05 3.1E-10 93.6 11.2 116 483-617 313-450 (924)
148 TIGR03186 AKGDH_not_PDH alpha- 98.0 2.8E-05 6.1E-10 90.3 11.9 119 483-618 188-391 (889)
149 COG0674 PorA Pyruvate:ferredox 98.0 9.3E-05 2E-09 79.0 14.9 155 68-227 4-164 (365)
150 TIGR02176 pyruv_ox_red pyruvat 98.0 2.6E-05 5.7E-10 94.7 11.9 151 69-225 3-166 (1165)
151 COG1154 Dxs Deoxyxylulose-5-ph 98.0 2.4E-05 5.2E-10 85.5 10.3 138 484-622 115-286 (627)
152 TIGR00239 2oxo_dh_E1 2-oxoglut 98.0 4.1E-05 8.9E-10 89.5 12.4 118 482-617 313-451 (929)
153 PLN02225 1-deoxy-D-xylulose-5- 97.9 2.1E-05 4.5E-10 89.3 8.6 182 433-618 122-367 (701)
154 KOG0523 Transketolase [Carbohy 97.9 7.1E-05 1.5E-09 81.5 11.8 116 482-616 116-242 (632)
155 KOG0225 Pyruvate dehydrogenase 97.9 4.2E-05 9.1E-10 77.3 9.4 116 481-617 162-289 (394)
156 TIGR00759 aceE pyruvate dehydr 97.9 9.6E-05 2.1E-09 85.0 12.0 118 484-618 189-391 (885)
157 COG1880 CdhB CO dehydrogenase/ 97.8 9.1E-05 2E-09 67.0 8.7 75 262-346 26-119 (170)
158 PRK09405 aceE pyruvate dehydro 97.8 0.00018 3.8E-09 83.8 13.4 119 484-619 195-398 (891)
159 PRK13012 2-oxoacid dehydrogena 97.8 0.00019 4.1E-09 83.9 12.7 119 483-618 202-405 (896)
160 PRK05261 putative phosphoketol 97.7 0.00024 5.2E-09 81.7 11.5 118 484-618 142-286 (785)
161 TIGR02176 pyruv_ox_red pyruvat 97.7 0.00084 1.8E-08 81.9 16.6 112 503-616 952-1068(1165)
162 KOG1182 Branched chain alpha-k 97.3 0.00036 7.8E-09 70.0 6.0 114 485-617 194-320 (432)
163 cd07033 TPP_PYR_DXS_TK_like Py 96.5 0.1 2.2E-06 48.9 14.5 113 109-228 40-156 (156)
164 PF02776 TPP_enzyme_N: Thiamin 96.4 0.012 2.6E-07 56.1 8.4 119 474-616 39-163 (172)
165 cd07039 TPP_PYR_POX Pyrimidine 96.4 0.15 3.2E-06 48.3 15.4 118 474-616 38-160 (164)
166 COG1029 FwdB Formylmethanofura 96.4 0.019 4.1E-07 59.2 9.7 139 257-402 65-220 (429)
167 cd07035 TPP_PYR_POX_like Pyrim 96.4 0.031 6.7E-07 52.1 10.7 104 489-613 46-154 (155)
168 PF02552 CO_dh: CO dehydrogena 96.3 0.014 3.1E-07 54.8 7.5 111 260-383 23-149 (167)
169 PTZ00182 3-methyl-2-oxobutanat 95.7 0.91 2E-05 48.5 19.1 156 69-232 34-209 (355)
170 cd02013 TPP_Xsc_like Thiamine 95.4 0.32 7E-06 47.4 13.2 151 76-229 9-179 (196)
171 cd02009 TPP_SHCHC_synthase Thi 95.2 0.11 2.3E-06 49.7 9.3 116 108-229 42-175 (175)
172 PF02779 Transket_pyr: Transke 95.2 0.15 3.3E-06 48.9 10.2 118 109-230 49-174 (178)
173 cd02004 TPP_BZL_OCoD_HPCL Thia 95.2 0.11 2.3E-06 49.5 9.0 106 118-229 52-172 (172)
174 smart00861 Transket_pyr Transk 95.2 0.19 4.1E-06 47.6 10.7 111 110-228 52-166 (168)
175 PF02775 TPP_enzyme_C: Thiamin 95.0 0.17 3.7E-06 47.1 9.8 113 108-226 19-153 (153)
176 PRK09212 pyruvate dehydrogenas 95.0 1.1 2.4E-05 47.4 16.8 151 70-229 4-175 (327)
177 PRK11916 electron transfer fla 94.7 0.16 3.5E-06 53.0 9.3 111 274-399 195-311 (312)
178 cd07038 TPP_PYR_PDC_IPDC_like 94.7 1 2.2E-05 42.5 13.9 122 474-613 35-161 (162)
179 cd06586 TPP_enzyme_PYR Pyrimid 94.6 0.21 4.5E-06 46.2 9.2 102 489-613 47-153 (154)
180 cd02014 TPP_POX Thiamine pyrop 94.6 1.5 3.2E-05 41.9 15.3 116 108-229 42-173 (178)
181 PLN00022 electron transfer fla 94.5 0.15 3.2E-06 54.1 8.7 112 274-400 238-354 (356)
182 cd02761 MopB_FmdB-FwdB The Mop 94.5 0.21 4.6E-06 54.5 10.3 137 256-398 55-207 (415)
183 PRK11892 pyruvate dehydrogenas 94.4 0.76 1.6E-05 50.9 14.3 149 67-225 139-309 (464)
184 cd02003 TPP_IolD Thiamine pyro 94.3 0.29 6.3E-06 48.1 9.9 137 87-229 17-184 (205)
185 cd02010 TPP_ALS Thiamine pyrop 94.2 0.41 8.8E-06 45.9 10.4 104 120-229 54-170 (177)
186 cd07037 TPP_PYR_MenD Pyrimidin 94.2 1.1 2.3E-05 42.3 12.9 114 475-613 36-161 (162)
187 PRK03363 fixB putative electro 94.2 0.22 4.8E-06 52.0 8.9 111 274-399 196-312 (313)
188 PRK00481 NAD-dependent deacety 94.1 0.12 2.7E-06 52.1 6.8 68 329-398 171-240 (242)
189 TIGR00232 tktlase_bact transke 94.0 0.32 6.9E-06 56.4 10.7 155 69-229 348-515 (653)
190 cd02015 TPP_AHAS Thiamine pyro 93.8 0.47 1E-05 45.7 10.1 105 119-229 55-174 (186)
191 PRK12753 transketolase; Review 93.8 0.44 9.6E-06 55.3 11.5 115 110-229 405-521 (663)
192 cd02006 TPP_Gcl Thiamine pyrop 93.8 0.89 1.9E-05 44.5 12.1 109 119-229 62-194 (202)
193 PRK14138 NAD-dependent deacety 93.8 0.13 2.9E-06 51.9 6.3 68 329-398 172-241 (244)
194 TIGR03845 sulfopyru_alph sulfo 93.8 0.89 1.9E-05 42.6 11.5 105 487-613 44-153 (157)
195 PTZ00089 transketolase; Provis 93.7 0.42 9.1E-06 55.5 11.1 114 111-229 407-522 (661)
196 cd02001 TPP_ComE_PpyrDC Thiami 93.7 2.4 5.3E-05 39.6 14.3 136 86-229 15-155 (157)
197 cd01408 SIRT1 SIRT1: Eukaryoti 93.6 0.11 2.3E-06 52.3 5.3 66 329-394 169-235 (235)
198 PLN02582 1-deoxy-D-xylulose-5- 93.5 1 2.2E-05 52.1 13.7 152 70-230 356-517 (677)
199 PLN02790 transketolase 93.5 0.43 9.3E-06 55.4 10.7 114 111-229 396-512 (654)
200 COG2025 FixB Electron transfer 93.3 0.33 7.2E-06 50.3 8.4 111 275-400 197-312 (313)
201 cd07036 TPP_PYR_E1-PDHc-beta_l 93.3 1.4 3E-05 41.8 11.9 113 472-611 40-164 (167)
202 cd03375 TPP_OGFOR Thiamine pyr 93.2 0.74 1.6E-05 44.7 10.4 149 71-229 9-184 (193)
203 PRK12754 transketolase; Review 93.2 0.61 1.3E-05 54.0 11.1 155 70-229 355-521 (663)
204 cd07033 TPP_PYR_DXS_TK_like Py 93.1 1.1 2.5E-05 41.8 11.1 114 474-612 38-154 (156)
205 cd02005 TPP_PDC_IPDC Thiamine 93.1 3.3 7.2E-05 39.8 14.6 106 119-229 55-174 (183)
206 PRK07524 hypothetical protein; 92.9 0.69 1.5E-05 52.5 11.1 111 488-617 50-166 (535)
207 TIGR00300 conserved hypothetic 92.7 0.43 9.4E-06 50.3 8.2 67 331-399 335-405 (407)
208 cd07036 TPP_PYR_E1-PDHc-beta_l 92.7 4 8.6E-05 38.7 14.2 148 72-228 3-167 (167)
209 TIGR03297 Ppyr-DeCO2ase phosph 92.5 0.33 7.1E-06 52.0 7.3 109 486-613 35-151 (361)
210 TIGR03129 one_C_dehyd_B formyl 92.4 0.89 1.9E-05 49.7 10.8 137 256-398 61-213 (421)
211 TIGR03846 sulfopy_beta sulfopy 92.4 3.5 7.6E-05 39.6 13.6 103 119-229 47-156 (181)
212 PRK08266 hypothetical protein; 92.4 2.8 6.1E-05 47.6 15.2 109 489-616 55-169 (542)
213 cd02008 TPP_IOR_alpha Thiamine 92.3 1.8 3.9E-05 41.4 11.6 101 119-226 56-174 (178)
214 PRK07979 acetolactate synthase 92.3 2.6 5.5E-05 48.4 14.7 119 474-617 42-166 (574)
215 PRK05778 2-oxoglutarate ferred 92.3 1.8 3.8E-05 45.2 12.1 148 71-228 28-202 (301)
216 PTZ00408 NAD-dependent deacety 92.2 0.35 7.5E-06 48.8 6.6 69 328-398 165-235 (242)
217 TIGR03181 PDH_E1_alph_x pyruva 92.0 1.1 2.4E-05 47.6 10.6 108 118-228 130-245 (341)
218 cd00568 TPP_enzymes Thiamine p 92.0 0.84 1.8E-05 42.8 8.7 104 118-227 50-167 (168)
219 PRK12270 kgd alpha-ketoglutara 92.0 1.1 2.5E-05 52.6 11.0 95 504-617 649-755 (1228)
220 CHL00144 odpB pyruvate dehydro 91.9 2.2 4.8E-05 45.1 12.6 153 70-229 4-175 (327)
221 cd02002 TPP_BFDC Thiamine pyro 91.9 5.3 0.00011 38.0 14.3 133 88-227 20-177 (178)
222 cd01412 SIRT5_Af1_CobB SIRT5_A 91.9 0.31 6.8E-06 48.6 5.9 64 329-394 158-223 (224)
223 PRK07710 acetolactate synthase 91.8 0.55 1.2E-05 53.7 8.6 106 489-616 65-176 (571)
224 PRK06725 acetolactate synthase 91.8 0.5 1.1E-05 54.0 8.2 107 489-617 64-176 (570)
225 PRK07525 sulfoacetaldehyde ace 91.8 4.1 8.8E-05 46.9 15.6 108 119-229 440-562 (588)
226 PRK05333 NAD-dependent deacety 91.7 0.37 8E-06 49.9 6.4 70 329-400 208-279 (285)
227 PRK13012 2-oxoacid dehydrogena 91.6 3.6 7.9E-05 49.0 15.0 162 67-229 500-704 (896)
228 PRK08611 pyruvate oxidase; Pro 91.6 1.2 2.6E-05 51.0 11.0 107 489-617 55-166 (576)
229 PF09364 XFP_N: XFP N-terminal 91.5 0.22 4.8E-06 52.1 4.4 90 484-590 140-234 (379)
230 PRK07789 acetolactate synthase 91.5 0.71 1.5E-05 53.3 9.1 106 489-616 81-192 (612)
231 TIGR01504 glyox_carbo_lig glyo 91.5 1.2 2.5E-05 51.3 10.8 108 489-617 53-166 (588)
232 PRK07586 hypothetical protein; 91.4 3.1 6.7E-05 46.9 14.0 107 489-617 51-163 (514)
233 PRK06466 acetolactate synthase 91.3 2.4 5.2E-05 48.5 13.1 117 475-616 43-165 (574)
234 COG0028 IlvB Thiamine pyrophos 91.3 1 2.2E-05 51.2 9.8 108 489-618 51-164 (550)
235 PRK11269 glyoxylate carboligas 91.2 1.3 2.8E-05 51.0 10.8 107 489-616 54-166 (591)
236 PRK08322 acetolactate synthase 91.1 1.2 2.5E-05 50.8 10.3 106 489-616 50-161 (547)
237 PRK09628 oorB 2-oxoglutarate-a 91.0 3.8 8.3E-05 42.1 12.9 146 73-229 28-201 (277)
238 PRK08617 acetolactate synthase 91.0 0.88 1.9E-05 51.9 9.2 106 489-616 54-165 (552)
239 PRK07064 hypothetical protein; 91.0 1.7 3.6E-05 49.5 11.4 109 489-616 53-167 (544)
240 PRK09107 acetolactate synthase 90.9 2.5 5.4E-05 48.7 12.7 107 489-617 61-173 (595)
241 TIGR01591 Fdh-alpha formate de 90.8 1.7 3.7E-05 50.8 11.5 116 257-375 70-199 (671)
242 PRK08978 acetolactate synthase 90.7 1.1 2.3E-05 51.1 9.5 107 489-617 50-162 (548)
243 cd02768 MopB_NADH-Q-OR-NuoG2 M 90.7 1.6 3.4E-05 47.2 10.4 113 257-373 71-191 (386)
244 PRK05444 1-deoxy-D-xylulose-5- 90.7 1.5 3.2E-05 50.3 10.6 154 70-230 279-440 (580)
245 PTZ00409 Sir2 (Silent Informat 90.7 0.6 1.3E-05 47.9 6.7 71 328-400 192-264 (271)
246 PRK06882 acetolactate synthase 90.7 0.88 1.9E-05 52.1 8.8 106 489-616 54-165 (574)
247 PRK06276 acetolactate synthase 90.7 1.2 2.6E-05 51.2 9.9 106 489-616 50-161 (586)
248 PRK05858 hypothetical protein; 90.7 1.4 3E-05 50.1 10.4 107 489-617 54-166 (542)
249 PRK08979 acetolactate synthase 90.7 1.2 2.6E-05 51.0 9.8 106 489-616 54-165 (572)
250 PLN02470 acetolactate synthase 90.6 0.76 1.6E-05 52.8 8.2 117 475-616 52-174 (585)
251 cd02000 TPP_E1_PDC_ADC_BCADC T 90.6 0.97 2.1E-05 47.0 8.3 107 121-229 111-228 (293)
252 PRK07418 acetolactate synthase 90.6 0.98 2.1E-05 52.2 9.1 107 489-617 72-184 (616)
253 PRK12571 1-deoxy-D-xylulose-5- 90.6 1.5 3.3E-05 50.7 10.5 148 71-229 320-479 (641)
254 TIGR00204 dxs 1-deoxy-D-xylulo 90.5 1.7 3.6E-05 50.2 10.8 151 70-229 310-470 (617)
255 TIGR03254 oxalate_oxc oxalyl-C 90.5 0.76 1.6E-05 52.4 8.1 109 489-617 52-166 (554)
256 PRK11866 2-oxoacid ferredoxin 90.5 3.6 7.8E-05 42.4 12.1 146 72-226 18-189 (279)
257 PRK06112 acetolactate synthase 90.4 1.5 3.3E-05 50.2 10.4 106 489-616 61-172 (578)
258 PRK08327 acetolactate synthase 90.3 1.1 2.4E-05 51.2 9.2 119 108-229 421-567 (569)
259 PRK06456 acetolactate synthase 90.3 1.5 3.2E-05 50.3 10.2 107 489-617 55-167 (572)
260 PRK08199 thiamine pyrophosphat 90.3 1.6 3.5E-05 49.8 10.4 106 489-616 58-169 (557)
261 PRK12474 hypothetical protein; 90.3 1.6 3.4E-05 49.4 10.2 107 489-617 55-167 (518)
262 PRK12315 1-deoxy-D-xylulose-5- 90.3 2 4.3E-05 49.2 11.0 151 70-230 278-438 (581)
263 PRK09259 putative oxalyl-CoA d 90.2 1.5 3.3E-05 50.1 10.2 108 489-616 59-172 (569)
264 cd03376 TPP_PFOR_porB_like Thi 90.1 2.7 5.8E-05 42.2 10.7 92 131-229 80-200 (235)
265 PRK05899 transketolase; Review 90.1 1.7 3.7E-05 50.3 10.5 116 109-229 368-486 (624)
266 COG3957 Phosphoketolase [Carbo 90.1 0.44 9.5E-06 53.7 5.3 88 484-590 153-247 (793)
267 cd02753 MopB_Formate-Dh-H Form 90.1 2.5 5.4E-05 47.7 11.7 136 257-398 71-225 (512)
268 cd07034 TPP_PYR_PFOR_IOR-alpha 90.0 1.6 3.5E-05 40.8 8.5 102 489-612 53-158 (160)
269 KOG3954 Electron transfer flav 89.9 0.67 1.5E-05 46.1 5.9 119 266-399 205-334 (336)
270 PRK06048 acetolactate synthase 89.9 0.9 2E-05 51.9 8.0 106 489-616 57-168 (561)
271 cd02018 TPP_PFOR Thiamine pyro 89.8 2.7 5.8E-05 42.3 10.4 95 131-231 87-205 (237)
272 PRK06457 pyruvate dehydrogenas 89.8 1.7 3.7E-05 49.4 10.1 107 489-617 51-162 (549)
273 cd02767 MopB_ydeP The MopB_yde 89.7 3 6.5E-05 47.7 11.9 113 256-371 82-203 (574)
274 PRK06163 hypothetical protein; 89.6 22 0.00047 34.8 17.0 134 88-229 32-173 (202)
275 TIGR00118 acolac_lg acetolacta 89.6 1.6 3.5E-05 49.8 9.8 117 475-616 40-162 (558)
276 PLN02374 pyruvate dehydrogenas 89.6 1.5 3.2E-05 48.1 8.9 93 133-227 223-323 (433)
277 PRK08527 acetolactate synthase 89.6 1.9 4E-05 49.4 10.2 106 489-616 53-164 (563)
278 PRK09124 pyruvate dehydrogenas 89.5 7.7 0.00017 44.4 15.2 148 76-229 364-530 (574)
279 PRK06965 acetolactate synthase 89.5 7.5 0.00016 44.7 15.1 106 489-616 71-182 (587)
280 TIGR03457 sulphoacet_xsc sulfo 89.3 7 0.00015 44.8 14.7 155 70-229 381-557 (579)
281 PRK11869 2-oxoacid ferredoxin 89.3 8 0.00017 39.9 13.5 149 71-227 18-191 (280)
282 CHL00149 odpA pyruvate dehydro 89.3 2.6 5.6E-05 44.9 10.3 93 134-228 158-258 (341)
283 PLN02234 1-deoxy-D-xylulose-5- 89.3 7.8 0.00017 44.7 14.7 150 70-230 357-518 (641)
284 TIGR03182 PDH_E1_alph_y pyruva 89.1 1.7 3.8E-05 45.6 8.8 106 122-229 118-234 (315)
285 PRK07092 benzoylformate decarb 89.0 2 4.3E-05 48.8 9.8 108 489-617 60-173 (530)
286 PF00676 E1_dh: Dehydrogenase 88.9 1.4 3.1E-05 45.9 7.9 101 125-227 112-223 (300)
287 PRK07282 acetolactate synthase 88.9 1 2.2E-05 51.4 7.5 118 475-617 49-172 (566)
288 cd03372 TPP_ComE Thiamine pyro 88.9 9.1 0.0002 36.6 13.0 103 118-229 46-155 (179)
289 TIGR02418 acolac_catab acetola 88.9 1.6 3.5E-05 49.6 9.0 106 489-616 48-159 (539)
290 PRK09444 pntB pyridine nucleot 88.8 1.7 3.6E-05 47.1 8.4 84 259-345 294-391 (462)
291 PRK08155 acetolactate synthase 88.7 1.5 3.2E-05 50.2 8.6 106 489-616 63-174 (564)
292 cd01409 SIRT4 SIRT4: Eukaryoti 88.6 0.54 1.2E-05 48.0 4.4 61 329-391 198-260 (260)
293 PF02779 Transket_pyr: Transke 88.5 2.2 4.9E-05 40.7 8.5 116 474-613 47-171 (178)
294 TIGR03479 DMSO_red_II_alp DMSO 88.4 4.4 9.6E-05 49.1 12.7 141 257-400 141-295 (912)
295 cd02752 MopB_Formate-Dh-Na-lik 88.4 0.8 1.7E-05 52.9 6.1 115 257-375 73-214 (649)
296 TIGR02720 pyruv_oxi_spxB pyruv 88.3 1.6 3.5E-05 50.0 8.6 107 489-617 50-161 (575)
297 TIGR00173 menD 2-succinyl-5-en 87.9 1.6 3.5E-05 48.1 8.0 117 475-616 39-167 (432)
298 CHL00099 ilvB acetohydroxyacid 87.9 1.6 3.4E-05 50.2 8.2 106 489-616 63-174 (585)
299 PRK11892 pyruvate dehydrogenas 87.9 4.5 9.8E-05 44.8 11.3 110 474-610 188-308 (464)
300 PRK06546 pyruvate dehydrogenas 87.7 3.2 7E-05 47.6 10.5 105 119-229 413-530 (578)
301 cd03371 TPP_PpyrDC Thiamine py 87.5 22 0.00047 34.3 14.6 104 119-229 53-163 (188)
302 TIGR03394 indol_phenyl_DC indo 86.9 3.3 7.2E-05 47.0 10.0 105 119-229 408-521 (535)
303 TIGR02177 PorB_KorB 2-oxoacid: 86.8 3 6.5E-05 43.1 8.6 143 72-227 12-184 (287)
304 PRK06154 hypothetical protein; 86.7 2.8 6.2E-05 47.9 9.3 157 70-230 381-556 (565)
305 PRK11867 2-oxoglutarate ferred 86.5 4 8.7E-05 42.2 9.4 150 71-229 27-202 (286)
306 PLN02225 1-deoxy-D-xylulose-5- 86.1 10 0.00022 44.0 13.2 150 69-229 380-541 (701)
307 TIGR01973 NuoG NADH-quinone ox 86.0 3.5 7.6E-05 47.6 9.7 115 257-376 288-408 (603)
308 cd02750 MopB_Nitrate-R-NarG-li 86.0 4.5 9.7E-05 45.0 10.2 138 257-398 87-238 (461)
309 TIGR01701 Fdhalpha-like oxidor 85.3 7.2 0.00016 46.1 11.9 113 256-371 117-238 (743)
310 PLN02683 pyruvate dehydrogenas 85.2 13 0.00029 39.8 12.9 150 70-227 27-196 (356)
311 PLN02573 pyruvate decarboxylas 85.1 5.1 0.00011 46.0 10.4 107 119-229 433-552 (578)
312 PRK08273 thiamine pyrophosphat 85.0 20 0.00043 41.3 15.2 118 475-617 43-166 (597)
313 cd02766 MopB_3 The MopB_3 CD i 84.9 3.2 7E-05 46.7 8.5 140 257-400 75-228 (501)
314 cd02754 MopB_Nitrate-R-NapA-li 84.7 3.1 6.8E-05 47.5 8.5 142 257-399 72-229 (565)
315 PF02233 PNTB: NAD(P) transhyd 83.9 3 6.4E-05 45.7 7.2 128 260-397 296-462 (463)
316 PRK09129 NADH dehydrogenase su 83.9 5.1 0.00011 47.7 10.0 136 257-396 289-436 (776)
317 PRK07449 2-succinyl-5-enolpyru 83.7 2.9 6.3E-05 47.8 7.7 115 108-229 416-549 (568)
318 PRK09212 pyruvate dehydrogenas 83.7 11 0.00024 39.9 11.4 37 574-610 133-170 (327)
319 COG1071 AcoA Pyruvate/2-oxoglu 83.3 5.4 0.00012 42.3 8.7 117 108-226 134-258 (358)
320 cd02774 MopB_Res-Cmplx1_Nad11- 82.6 7.1 0.00015 42.0 9.6 110 257-370 71-188 (366)
321 TIGR03336 IOR_alpha indolepyru 82.3 9 0.00019 44.1 10.9 108 119-229 408-530 (595)
322 cd02762 MopB_1 The MopB_1 CD i 82.2 10 0.00022 43.0 11.3 137 257-400 71-233 (539)
323 cd02772 MopB_NDH-1_NuoG2 MopB_ 81.6 20 0.00043 39.1 12.9 112 257-372 71-193 (414)
324 PRK09939 putative oxidoreducta 81.3 5.2 0.00011 47.3 8.5 111 256-371 126-248 (759)
325 PTZ00182 3-methyl-2-oxobutanat 81.2 18 0.0004 38.6 12.0 37 574-610 164-201 (355)
326 cd01410 SIRT7 SIRT7: Eukaryoti 81.0 2.2 4.9E-05 41.9 4.6 57 328-386 148-206 (206)
327 COG3958 Transketolase, C-termi 80.9 11 0.00024 38.6 9.4 154 70-229 7-168 (312)
328 PLN02683 pyruvate dehydrogenas 80.6 16 0.00036 39.0 11.4 151 434-611 27-194 (356)
329 cd02773 MopB_Res-Cmplx1_Nad11 80.4 11 0.00023 40.7 10.2 111 256-372 69-187 (375)
330 KOG0451 Predicted 2-oxoglutara 80.1 7.2 0.00016 43.0 8.3 93 503-614 318-424 (913)
331 CHL00144 odpB pyruvate dehydro 79.4 21 0.00046 37.7 11.6 39 573-611 132-171 (327)
332 cd01460 vWA_midasin VWA_Midasi 78.7 12 0.00027 38.1 9.3 84 504-602 166-256 (266)
333 KOG1905 Class IV sirtuins (SIR 78.6 4.9 0.00011 40.9 6.1 71 328-400 209-281 (353)
334 COG2609 AceE Pyruvate dehydrog 78.5 7.2 0.00016 44.4 7.9 89 484-589 192-293 (887)
335 cd01411 SIR2H SIR2H: Uncharact 78.4 1.7 3.7E-05 43.4 2.9 55 329-385 165-220 (225)
336 TIGR03393 indolpyr_decarb indo 78.4 11 0.00023 43.0 9.7 103 121-229 411-527 (539)
337 KOG2682 NAD-dependent histone 78.3 4.7 0.0001 39.6 5.7 76 334-421 211-289 (314)
338 COG1154 Dxs Deoxyxylulose-5-ph 78.1 1.2E+02 0.0025 34.6 17.0 150 70-229 316-476 (627)
339 cd02755 MopB_Thiosulfate-R-lik 77.5 5.2 0.00011 44.4 6.7 137 257-399 76-227 (454)
340 TIGR03186 AKGDH_not_PDH alpha- 77.4 17 0.00037 43.4 11.0 120 110-229 563-691 (889)
341 cd02759 MopB_Acetylene-hydrata 75.0 10 0.00022 42.3 8.3 136 257-398 75-229 (477)
342 cd00368 Molybdopterin-Binding 74.9 2.8 6.1E-05 44.9 3.6 115 257-374 73-199 (374)
343 cd01407 SIR2-fam SIR2 family o 74.1 3.7 7.9E-05 40.7 4.0 56 329-386 161-218 (218)
344 cd01413 SIR2_Af2 SIR2_Af2: Arc 73.9 4.1 8.9E-05 40.5 4.3 48 328-375 164-213 (222)
345 COG1915 Uncharacterized conser 73.8 1.9 4.2E-05 43.8 1.9 70 330-401 333-406 (415)
346 PRK00414 gmhA phosphoheptose i 73.8 23 0.00049 34.3 9.3 99 70-169 31-149 (192)
347 cd02007 TPP_DXS Thiamine pyrop 73.7 31 0.00067 33.5 10.3 100 121-227 82-188 (195)
348 PRK11865 pyruvate ferredoxin o 72.3 40 0.00086 35.1 11.1 113 108-226 64-208 (299)
349 PLN02980 2-oxoglutarate decarb 71.7 14 0.0003 47.9 9.2 104 120-229 767-889 (1655)
350 TIGR01553 formate-DH-alph form 71.5 8.5 0.00018 47.0 6.9 139 257-399 125-291 (1009)
351 COG1029 FwdB Formylmethanofura 71.4 19 0.00041 37.9 8.3 111 257-372 231-371 (429)
352 COG1282 PntB NAD/NADP transhyd 71.3 5.7 0.00012 41.7 4.5 78 259-345 296-393 (463)
353 PRK05261 putative phosphoketol 71.1 48 0.001 39.2 12.5 113 108-228 450-580 (785)
354 PRK13936 phosphoheptose isomer 70.7 28 0.0006 33.8 9.2 100 71-170 31-150 (197)
355 cd02764 MopB_PHLH The MopB_PHL 70.4 34 0.00073 38.7 11.1 134 257-398 117-272 (524)
356 PRK11864 2-ketoisovalerate fer 70.3 47 0.001 34.6 11.1 113 107-226 63-204 (300)
357 cd02757 MopB_Arsenate-R This C 70.2 17 0.00037 41.1 8.7 133 257-398 81-232 (523)
358 PTZ00410 NAD-dependent SIR2; P 68.9 12 0.00025 39.9 6.4 43 329-371 199-242 (349)
359 PLN02269 Pyruvate dehydrogenas 68.6 23 0.0005 38.0 8.7 114 108-226 136-256 (362)
360 COG4032 Predicted thiamine-pyr 65.7 9.8 0.00021 34.5 4.3 100 490-611 55-160 (172)
361 cd02751 MopB_DMSOR-like The Mo 64.7 16 0.00035 42.2 7.2 142 257-399 78-248 (609)
362 PRK10886 DnaA initiator-associ 63.1 41 0.0009 32.7 8.6 101 70-171 28-149 (196)
363 cd01453 vWA_transcription_fact 63.0 37 0.00081 32.5 8.3 70 502-602 107-179 (183)
364 PF00766 ETF_alpha: Electron t 62.9 7.9 0.00017 32.2 3.0 61 274-345 9-73 (86)
365 PRK09405 aceE pyruvate dehydro 62.3 3E+02 0.0065 33.3 16.8 117 110-227 568-694 (891)
366 COG3958 Transketolase, C-termi 61.3 67 0.0015 33.1 9.8 130 451-613 26-166 (312)
367 KOG4166 Thiamine pyrophosphate 61.3 25 0.00053 37.9 6.9 103 492-617 144-253 (675)
368 TIGR00441 gmhA phosphoheptose 61.2 62 0.0013 30.0 9.2 96 74-169 2-117 (154)
369 COG0846 SIR2 NAD-dependent pro 60.5 6.6 0.00014 39.7 2.6 69 329-399 176-246 (250)
370 PF00384 Molybdopterin: Molybd 60.4 12 0.00025 41.0 4.8 143 257-400 22-183 (432)
371 cd00296 SIR2 SIR2 superfamily 60.1 11 0.00023 37.3 4.0 54 331-384 165-220 (222)
372 cd02765 MopB_4 The MopB_4 CD i 59.6 45 0.00097 38.2 9.5 67 332-400 156-230 (567)
373 COG3383 Uncharacterized anaero 59.5 22 0.00049 41.0 6.6 69 331-401 416-492 (978)
374 PRK13937 phosphoheptose isomer 58.6 56 0.0012 31.4 8.7 100 71-170 26-145 (188)
375 cd02770 MopB_DmsA-EC This CD ( 58.1 28 0.0006 40.3 7.6 140 257-400 80-241 (617)
376 PRK15488 thiosulfate reductase 58.0 45 0.00098 39.6 9.5 137 257-399 119-268 (759)
377 cd02012 TPP_TK Thiamine pyroph 56.8 65 0.0014 32.6 9.2 107 119-229 110-227 (255)
378 PF13580 SIS_2: SIS domain; PD 55.3 20 0.00044 32.5 4.7 94 71-166 23-138 (138)
379 PRK13761 hypothetical protein; 54.4 22 0.00048 34.9 4.9 139 256-400 52-210 (248)
380 PRK13532 nitrate reductase cat 54.3 55 0.0012 39.4 9.5 69 332-400 203-279 (830)
381 cd06311 PBP1_ABC_sugar_binding 54.2 2.3E+02 0.0051 28.1 15.2 149 69-229 109-272 (274)
382 PRK09130 NADH dehydrogenase su 54.1 42 0.0009 39.4 8.1 108 257-370 289-404 (687)
383 smart00861 Transket_pyr Transk 53.9 66 0.0014 30.1 8.2 102 489-612 61-164 (168)
384 PRK08493 NADH dehydrogenase su 53.7 34 0.00074 40.8 7.4 135 258-400 297-444 (819)
385 cd02016 TPP_E1_OGDC_like Thiam 53.5 62 0.0013 33.1 8.2 93 132-226 139-243 (265)
386 TIGR00519 asnASE_I L-asparagin 52.8 58 0.0013 34.6 8.3 44 257-304 224-271 (336)
387 KOG0523 Transketolase [Carbohy 50.8 1.3E+02 0.0027 34.2 10.5 212 63-302 312-538 (632)
388 COG0075 Serine-pyruvate aminot 50.5 20 0.00044 38.5 4.5 14 603-616 159-172 (383)
389 cd02763 MopB_2 The MopB_2 CD i 50.0 31 0.00068 40.3 6.2 137 257-399 75-225 (679)
390 TIGR01706 NAPA periplasmic nit 49.6 1.1E+02 0.0024 36.8 11.0 69 332-400 203-279 (830)
391 cd02761 MopB_FmdB-FwdB The Mop 49.1 1.6E+02 0.0034 31.9 11.4 42 256-297 220-267 (415)
392 TIGR00162 conserved hypothetic 48.9 1.7E+02 0.0036 28.3 10.1 89 71-173 34-125 (188)
393 TIGR00509 bisC_fam molybdopter 48.9 74 0.0016 37.9 9.3 140 257-400 76-247 (770)
394 PRK15482 transcriptional regul 48.8 54 0.0012 33.7 7.3 97 256-370 120-219 (285)
395 COG1609 PurR Transcriptional r 48.4 3E+02 0.0066 28.9 13.1 98 68-166 158-271 (333)
396 PRK07860 NADH dehydrogenase su 48.4 59 0.0013 38.9 8.4 113 257-372 296-418 (797)
397 PRK08659 2-oxoglutarate ferred 48.2 76 0.0017 34.3 8.5 50 489-540 60-109 (376)
398 PRK13685 hypothetical protein; 48.1 1E+02 0.0023 32.4 9.4 85 503-602 194-287 (326)
399 PRK13938 phosphoheptose isomer 48.1 85 0.0018 30.5 8.0 99 71-170 33-152 (196)
400 PF10087 DUF2325: Uncharacteri 47.8 49 0.0011 28.0 5.6 54 275-344 2-57 (97)
401 cd08769 DAP_dppA_2 Peptidase M 47.8 5 0.00011 41.0 -0.6 142 72-216 38-205 (270)
402 cd02760 MopB_Phenylacetyl-CoA- 47.8 64 0.0014 38.4 8.4 70 331-400 169-245 (760)
403 PRK05647 purN phosphoribosylgl 47.1 47 0.001 32.4 6.1 37 503-539 3-39 (200)
404 COG1701 Uncharacterized protei 46.9 33 0.00073 33.3 4.7 138 256-400 54-213 (256)
405 cd05006 SIS_GmhA Phosphoheptos 46.9 1.5E+02 0.0032 28.0 9.4 37 134-170 103-140 (177)
406 COG2247 LytB Putative cell wal 46.4 49 0.0011 34.4 6.2 54 274-346 30-86 (337)
407 COG0021 TktA Transketolase [Ca 46.1 1.3E+02 0.0028 34.5 9.8 114 110-228 405-520 (663)
408 PF13519 VWA_2: von Willebrand 45.9 20 0.00044 32.9 3.3 71 502-600 99-171 (172)
409 cd02758 MopB_Tetrathionate-Ra 45.1 64 0.0014 38.2 7.9 70 331-400 207-289 (735)
410 cd05005 SIS_PHI Hexulose-6-pho 44.9 95 0.0021 29.4 7.8 46 256-302 18-64 (179)
411 KOG1185 Thiamine pyrophosphate 44.8 51 0.0011 36.3 6.2 90 505-615 79-173 (571)
412 PRK11557 putative DNA-binding 44.7 58 0.0013 33.3 6.7 71 257-345 114-185 (278)
413 KOG0524 Pyruvate dehydrogenase 44.5 1.5E+02 0.0033 30.2 9.0 148 439-613 41-205 (359)
414 COG1737 RpiR Transcriptional r 44.5 71 0.0015 32.9 7.3 96 256-369 115-213 (281)
415 cd00281 DAP_dppA Peptidase M55 44.1 12 0.00025 38.2 1.3 141 72-215 38-203 (265)
416 cd00368 Molybdopterin-Binding 43.9 1.4E+02 0.0031 31.6 9.9 85 257-348 229-319 (374)
417 TIGR01580 narG respiratory nit 43.4 86 0.0019 38.9 8.6 141 257-400 162-316 (1235)
418 COG0552 FtsY Signal recognitio 43.4 1.1E+02 0.0025 32.2 8.4 47 257-303 152-200 (340)
419 TIGR00655 PurU formyltetrahydr 43.0 50 0.0011 34.1 5.8 36 501-539 84-122 (280)
420 PF07085 DRTGG: DRTGG domain; 42.4 32 0.00069 29.5 3.7 32 272-305 62-93 (105)
421 cd00763 Bacterial_PFK Phosphof 41.9 53 0.0011 34.6 5.9 50 62-111 70-119 (317)
422 TIGR03127 RuMP_HxlB 6-phospho 41.7 1.1E+02 0.0024 28.8 7.7 89 72-171 19-112 (179)
423 PRK09130 NADH dehydrogenase su 41.7 51 0.0011 38.7 6.3 36 262-297 428-469 (687)
424 PRK07119 2-ketoisovalerate fer 41.6 33 0.00072 36.7 4.4 49 489-539 60-108 (352)
425 cd05013 SIS_RpiR RpiR-like pro 41.4 52 0.0011 29.0 5.2 42 260-302 2-44 (139)
426 COG0279 GmhA Phosphoheptose is 40.1 2.2E+02 0.0049 26.9 8.9 102 69-171 27-149 (176)
427 PRK13010 purU formyltetrahydro 40.0 63 0.0014 33.5 6.0 35 502-539 94-131 (289)
428 PLN00125 Succinyl-CoA ligase [ 39.2 4.7E+02 0.01 27.3 13.1 141 451-606 152-298 (300)
429 cd05007 SIS_Etherase N-acetylm 39.1 1.3E+02 0.0027 30.7 8.0 101 71-171 37-158 (257)
430 PF10686 DUF2493: Protein of u 39.1 1.1E+02 0.0023 24.5 5.9 46 257-302 16-62 (71)
431 TIGR00274 N-acetylmuramic acid 39.1 1E+02 0.0022 32.1 7.4 98 71-169 45-164 (291)
432 COG0567 SucA 2-oxoglutarate de 39.0 1.3E+02 0.0027 36.0 8.7 93 506-617 329-433 (906)
433 PRK13982 bifunctional SbtC-lik 38.7 1.2E+02 0.0027 33.7 8.3 90 434-536 233-340 (475)
434 TIGR01012 Sa_S2_E_A ribosomal 38.7 1.9E+02 0.0041 28.1 8.7 72 259-347 47-120 (196)
435 cd08663 DAP_dppA_1 Peptidase M 38.5 8.8 0.00019 39.1 -0.5 141 72-215 38-204 (266)
436 PF04951 Peptidase_M55: D-amin 38.1 7.9 0.00017 39.5 -0.9 143 72-216 38-205 (265)
437 PF13380 CoA_binding_2: CoA bi 38.0 54 0.0012 28.8 4.5 42 72-113 67-108 (116)
438 PRK03202 6-phosphofructokinase 37.8 58 0.0013 34.3 5.4 51 62-112 71-121 (320)
439 PF06506 PrpR_N: Propionate ca 37.7 1.3E+02 0.0029 28.4 7.5 92 499-603 73-165 (176)
440 PF00455 DeoRC: DeoR C termina 37.2 3.1E+02 0.0067 25.5 9.8 87 438-534 8-98 (161)
441 TIGR02166 dmsA_ynfE anaerobic 36.7 87 0.0019 37.4 7.4 140 257-400 125-290 (797)
442 PRK05579 bifunctional phosphop 36.6 1E+02 0.0023 33.5 7.3 96 434-542 168-278 (399)
443 PLN02537 diaminopimelate decar 36.4 1.6E+02 0.0034 32.1 8.8 77 510-616 66-142 (410)
444 cd08170 GlyDH Glycerol dehydro 36.0 92 0.002 33.1 6.8 41 260-300 10-52 (351)
445 COG0299 PurN Folate-dependent 36.0 88 0.0019 30.3 5.8 40 503-545 2-45 (200)
446 PF01855 POR_N: Pyruvate flavo 35.9 32 0.0007 34.4 3.0 97 489-610 48-150 (230)
447 TIGR03710 OAFO_sf 2-oxoacid:ac 35.2 1.1E+02 0.0023 35.1 7.4 51 489-541 249-299 (562)
448 TIGR00639 PurN phosphoribosylg 35.1 1.1E+02 0.0025 29.5 6.6 37 503-539 2-38 (190)
449 PF02603 Hpr_kinase_N: HPr Ser 35.1 40 0.00088 30.2 3.3 48 257-305 66-113 (127)
450 PF12804 NTP_transf_3: MobA-li 35.0 3.5E+02 0.0075 24.5 10.2 96 69-166 23-123 (160)
451 TIGR02483 PFK_mixed phosphofru 35.0 78 0.0017 33.4 5.8 50 62-111 71-121 (324)
452 cd08770 DAP_dppA_3 Peptidase M 34.2 21 0.00045 36.4 1.3 142 72-217 38-205 (263)
453 COG1748 LYS9 Saccharopine dehy 34.2 1.3E+02 0.0029 32.5 7.5 85 71-157 57-142 (389)
454 PRK09404 sucA 2-oxoglutarate d 34.2 1.4E+02 0.0031 36.1 8.5 103 122-226 322-445 (924)
455 COG2894 MinD Septum formation 34.0 57 0.0012 32.4 4.2 113 483-603 11-134 (272)
456 cd05005 SIS_PHI Hexulose-6-pho 33.9 1.9E+02 0.0042 27.2 8.0 90 72-171 22-115 (179)
457 PRK00414 gmhA phosphoheptose i 33.6 2.9E+02 0.0062 26.6 9.2 102 437-538 31-148 (192)
458 PRK09860 putative alcohol dehy 33.4 1.4E+02 0.0031 32.2 7.8 42 259-300 17-62 (383)
459 PRK10427 putative PTS system f 32.6 2.4E+02 0.0051 24.8 7.6 81 285-398 21-103 (114)
460 PRK08366 vorA 2-ketoisovalerat 32.5 64 0.0014 35.0 4.9 47 489-537 61-107 (390)
461 KOG0225 Pyruvate dehydrogenase 32.2 2E+02 0.0043 30.3 7.9 92 130-226 184-284 (394)
462 cd08194 Fe-ADH6 Iron-containin 32.1 1.5E+02 0.0033 31.8 7.8 43 259-301 9-55 (375)
463 cd08193 HVD 5-hydroxyvalerate 32.0 1.5E+02 0.0033 31.9 7.7 43 259-301 12-58 (376)
464 cd08185 Fe-ADH1 Iron-containin 31.7 1.8E+02 0.0038 31.4 8.2 43 259-301 12-58 (380)
465 COG0054 RibH Riboflavin syntha 31.6 30 0.00066 32.0 1.9 70 61-130 19-104 (152)
466 PRK11302 DNA-binding transcrip 31.5 2.6E+02 0.0057 28.4 9.1 89 73-166 118-210 (284)
467 PRK05333 NAD-dependent deacety 31.3 54 0.0012 33.9 3.9 28 256-283 4-31 (285)
468 cd06348 PBP1_ABC_ligand_bindin 31.2 1.2E+02 0.0027 31.6 6.8 45 260-305 55-99 (344)
469 COG3960 Glyoxylate carboligase 31.2 76 0.0017 33.1 4.8 48 570-617 115-167 (592)
470 COG0618 Exopolyphosphatase-rel 31.2 3.7E+02 0.008 28.4 10.3 111 259-371 4-118 (332)
471 COG1737 RpiR Transcriptional r 31.0 3.6E+02 0.0078 27.7 10.0 94 71-170 118-216 (281)
472 PRK14990 anaerobic dimethyl su 30.8 1.3E+02 0.0029 36.0 7.7 68 332-400 228-307 (814)
473 TIGR03127 RuMP_HxlB 6-phospho 30.8 2E+02 0.0043 27.0 7.6 46 256-302 15-61 (179)
474 COG2006 Uncharacterized conser 30.6 5.2E+02 0.011 26.6 10.4 78 256-342 58-141 (293)
475 TIGR02482 PFKA_ATP 6-phosphofr 30.5 1E+02 0.0022 32.2 5.7 44 62-105 69-112 (301)
476 PRK02399 hypothetical protein; 30.2 2.1E+02 0.0046 31.1 8.1 138 71-230 199-344 (406)
477 PRK11337 DNA-binding transcrip 30.2 2.6E+02 0.0057 28.7 8.9 96 72-171 129-227 (292)
478 PRK10681 DNA-binding transcrip 30.0 4.9E+02 0.011 26.2 10.6 88 438-536 81-173 (252)
479 PRK11302 DNA-binding transcrip 29.8 98 0.0021 31.6 5.6 45 256-301 113-158 (284)
480 cd08182 HEPD Hydroxyethylphosp 29.5 1.8E+02 0.004 31.1 7.8 41 260-301 10-52 (367)
481 cd08187 BDH Butanol dehydrogen 29.4 1.8E+02 0.0039 31.3 7.8 41 261-301 17-61 (382)
482 cd08176 LPO Lactadehyde:propan 29.3 1.7E+02 0.0036 31.6 7.5 43 259-301 14-60 (377)
483 COG0156 BioF 7-keto-8-aminopel 29.1 1.8E+02 0.0039 31.6 7.5 50 286-345 190-240 (388)
484 TIGR02638 lactal_redase lactal 29.1 1.7E+02 0.0037 31.5 7.5 43 259-301 15-61 (379)
485 cd08171 GlyDH-like2 Glycerol d 28.9 1.6E+02 0.0035 31.2 7.2 41 260-300 10-52 (345)
486 TIGR02383 Hfq RNA chaperone Hf 28.9 69 0.0015 24.9 3.1 22 516-537 1-24 (61)
487 PRK13683 hypothetical protein; 28.8 72 0.0016 26.4 3.3 32 589-620 23-54 (87)
488 PLN02404 6,7-dimethyl-8-ribity 28.8 1.3E+02 0.0027 27.7 5.4 70 61-130 14-99 (141)
489 PRK06027 purU formyltetrahydro 28.7 1.3E+02 0.0028 31.2 6.2 33 503-538 91-126 (286)
490 cd02072 Glm_B12_BD B12 binding 28.6 61 0.0013 29.2 3.3 26 77-103 101-126 (128)
491 cd08190 HOT Hydroxyacid-oxoaci 28.6 2.1E+02 0.0046 31.2 8.2 42 260-301 10-55 (414)
492 COG3925 N-terminal domain of t 28.6 62 0.0013 27.2 2.9 31 334-370 39-69 (103)
493 PRK10892 D-arabinose 5-phospha 28.6 2.4E+02 0.0051 29.5 8.4 94 74-172 37-135 (326)
494 PRK08811 uroporphyrinogen-III 28.6 3.2E+02 0.0069 27.9 9.0 37 131-167 189-228 (266)
495 PRK10474 putative PTS system f 28.5 3E+02 0.0065 22.9 7.2 66 285-370 2-68 (88)
496 PRK04020 rps2P 30S ribosomal p 28.2 3.3E+02 0.0071 26.7 8.4 72 259-347 53-126 (204)
497 cd08181 PPD-like 1,3-propanedi 28.1 2.2E+02 0.0047 30.4 8.0 42 260-301 13-58 (357)
498 PLN03194 putative disease resi 28.0 2E+02 0.0044 27.7 6.8 57 51-107 21-82 (187)
499 cd08186 Fe-ADH8 Iron-containin 27.9 1.9E+02 0.0042 31.1 7.7 42 260-301 10-59 (383)
500 cd08188 Fe-ADH4 Iron-containin 27.6 2.2E+02 0.0047 30.7 8.0 43 259-301 14-60 (377)
No 1
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=9.8e-127 Score=958.21 Aligned_cols=577 Identities=55% Similarity=0.895 Sum_probs=545.4
Q ss_pred CCCcccccccCCCC---CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHh
Q 040733 55 FQQTDFSSRFAPDK---PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS 130 (643)
Q Consensus 55 ~~~~~~~~~~~~~~---~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~s 130 (643)
.-|++|.+++++++ .++|+|++++.|+++||++||||||+.++|++||+.++. +++|+.||||+|+|||.||||+|
T Consensus 73 sk~~t~~s~~~~D~sfvg~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~s 152 (675)
T KOG4166|consen 73 SKPETFISRFAPDQSFVGRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSS 152 (675)
T ss_pred CCcccccccCCCcccccCCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhc
Confidence 33789999999998 899999999999999999999999999999999999988 99999999999999999999999
Q ss_pred CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHH
Q 040733 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEA 210 (643)
Q Consensus 131 g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A 210 (643)
||||||++|||||++|.++++++|++|++||+++|||+|++.+|+++|||.|.+.+.|++|||++.|.+++++|+.|++|
T Consensus 153 gKPGvvlvTSGPGATNvvtp~ADAlaDg~PlVvftGQVptsaIGtDAFQEadiVgisRScTKwNvmVkdVedlPrrI~EA 232 (675)
T KOG4166|consen 153 GKPGVVLVTSGPGATNVVTPLADALADGVPLVVFTGQVPTSAIGTDAFQEADIVGISRSCTKWNVMVKDVEDLPRRIEEA 232 (675)
T ss_pred CCCcEEEEecCCCcccccchhhHHhhcCCcEEEEecccchhhcccchhccCCeeeeeeccceeheeeecHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCeEEEEcccchhhhccCCCCCCCCCCCC--CCCCCCCCCCH---HHHHHHHHHHHhCCCcEEEEcCCchhh
Q 040733 211 FFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPS--CISSLPKEPDE---LALRQTLKLIVESKNPVLCVGGGCLNS 285 (643)
Q Consensus 211 ~~~A~s~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~--~~~~~~~~~~~---~~i~~~~~~L~~AkrPvIl~G~g~~~~ 285 (643)
|.+|.|||||||.+++|.|++.+-..+.|+...++|. +..+.+..+++ ..+++++++|+.||||||++|+||.+.
T Consensus 233 FeiATSGRPGPVLVDlPKDvta~~l~~pip~~~~lPsn~~m~~~~~~~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~ 312 (675)
T KOG4166|consen 233 FEIATSGRPGPVLVDLPKDVTAQLLIPPIPQAMRLPSNAYMSRMPKPPEDFVMSHIEQIARLISLAKKPVLYVGGGCLNS 312 (675)
T ss_pred hhhhccCCCCCeEeeCcHHHHHHHhcCCchhhhcCCchhhHhhCCCCchhhHHHHHHHHHHHHHhccCceEEeCcccccC
Confidence 9999999999999999999998887777777777886 44455555665 689999999999999999999999854
Q ss_pred H---HHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCce
Q 040733 286 S---EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAK 362 (643)
Q Consensus 286 ~---~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~ 362 (643)
. .+|.+|.|+++|||.+|++|.|.+++++++++.|+|++|+.++|++++++||||++|.||++++|++++.|.++++
T Consensus 313 ~d~p~lL~~fser~qIPVtttL~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq~aDLilA~GvRFDDRVTGn~s~FAp~Ar 392 (675)
T KOG4166|consen 313 SDGPRLLGRFSERTQIPVTTTLMGLGSYDCDDELSLHMLGMHGTVYANYAVQHADLILAFGVRFDDRVTGNLSAFAPRAR 392 (675)
T ss_pred CcchHHHHHHHHhhcCcceehhhcccCcCCCCchhhhhhcccccceehhhhhccceeEEecceeccccccchhhhChhhh
Confidence 4 4899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred ---------EEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccc--CCC
Q 040733 363 ---------IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYK--TFG 431 (643)
Q Consensus 363 ---------iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~ 431 (643)
|||+|++|.+|||+..+++.++||+...|+.+...++.... +.+.+|+.+++.+|+++|..+. +++
T Consensus 393 ~aaae~rggIiHfdispknIgKvvqp~~aveGDv~~~L~~m~s~~kn~~~---~~r~dW~~qin~wK~~fP~sf~~~tpG 469 (675)
T KOG4166|consen 393 RAAAEGRGGIIHFDISPKNIGKVVQPHVAVEGDVKLALQGMNSVLKNRAE---ELRLDWRNQINVWKQKFPLSFKEETPG 469 (675)
T ss_pred hhhhcccCceEEEecCHHHhCcccCcceeeeccHHHHHHHHHhHhhcccc---hhhhhHHHHHHHHHHhCCeeeeccCCc
Confidence 99999999999999999999999999999999988877654 3456799999999999998654 567
Q ss_pred CCCCHHHHHHHHHhcCCC--CCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe
Q 040733 432 EEIPPQYAIQILNELTDD--EETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID 509 (643)
Q Consensus 432 ~~i~~~~~~~~L~~~l~~--~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~ 509 (643)
+.+.|+++++.|+++..+ ...||.+++|+|+||++++|+.++|++|++++|+|+||||||+||||++|+|+..||.|.
T Consensus 470 e~ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~P~~iViDID 549 (675)
T KOG4166|consen 470 EAIKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVANPDAIVIDID 549 (675)
T ss_pred cccChHHHHHHHHHhccCcCceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhcccccCcccEEEecc
Confidence 789999999999998754 267889999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC
Q 040733 510 GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT 589 (643)
Q Consensus 510 GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~ 589 (643)
||+||.|+++||+|+++.++||+|+++||+..||+-|||+.+|+.++.|+. ..+|||.++|++||+++.||+
T Consensus 550 GDaSF~Mt~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rysHTh--------Q~nPnf~klA~AmGikalRV~ 621 (675)
T KOG4166|consen 550 GDASFIMTVQELATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYSHTH--------QENPNFLKLAAAMGIKALRVT 621 (675)
T ss_pred CCceeeeehHhhhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhcccc--------ccCccHHHHHHhcCCchheee
Confidence 999999999999999999999999999999999999999999999998873 567999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCCCcccccccccCCCCCC
Q 040733 590 KKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGRAL 642 (643)
Q Consensus 590 ~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 642 (643)
+.+||++.++++++++||+|+||.|++++|++||+|.++++.+.|.++++|..
T Consensus 622 K~edL~~k~keflsTkGPvLleV~v~~kehVlPmvpgG~~l~~fI~~~~~~~k 674 (675)
T KOG4166|consen 622 KKEDLREKIKEFLSTKGPVLLEVIVPHKEHVLPMVPGGGTLNDFITEGDGRIK 674 (675)
T ss_pred hHHHHHHHHHHHhCCCCCeEEEEEccCccceeeecCCCccHhhhhccCCcccc
Confidence 99999999999999999999999999999999999999999999999999975
No 2
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.3e-116 Score=972.87 Aligned_cols=543 Identities=46% Similarity=0.739 Sum_probs=489.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
.|+++|+|++.|+++||++|||+||+.+++|+|+|.+++|++|.+|||++|+|||+||||+|||||||++|+|||++|++
T Consensus 1 ~~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~ 80 (550)
T COG0028 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNLL 80 (550)
T ss_pred CCcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHH
Confidence 47899999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+||++|+.|++|||+||||+++..+|+++|||+|+..|++++|||+++|.+++++++++++||+.|.++|||||||+||.
T Consensus 81 tgla~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~ 160 (550)
T COG0028 81 TGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPK 160 (550)
T ss_pred HHHHHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCC
Q 040733 229 DVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 229 Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|++.+++..........+.+.+. ....+++++++++|++||||+|++|+|+. ++.+++++|+|++++||++|++|
T Consensus 161 Dv~~~~~~~~~~~~~~~~~~~p~---~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~g 237 (550)
T COG0028 161 DVLAAEAEEPGPEPAILPPYRPA---PPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMG 237 (550)
T ss_pred hHhhcccccccccccccccCCCC---CCcHHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEEccCc
Confidence 99998864432111112222211 11128999999999999999999999998 46699999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
||++|++||+++|++|++|+..++.++++||+||+||++|+++.+. +..|.++.++||||+|+.++++++++++.|++|
T Consensus 238 kg~~p~~hp~~lG~~g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~~~ii~iDidp~ei~k~~~~~~~i~gD 316 (550)
T COG0028 238 KGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTG-YSGFAPPAAIIHIDIDPAEIGKNYPVDVPIVGD 316 (550)
T ss_pred CccCCCCCccccccccccccHHHHHHhhcCCEEEEecCCCcccccc-hhhhCCcCCEEEEeCChHHhCCCCCCCeeEecc
Confidence 9999999999999999999988999999999999999999999998 666665544999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC-cc-cCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHH
Q 040733 387 AKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF-SY-KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMW 464 (643)
Q Consensus 387 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~-~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~ 464 (643)
++.+|++|++.++.. ...|.+++.+.+.++.. .. .......+|+++++.|++.+++ |+||++|+|++++|
T Consensus 317 ~~~~l~~L~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~l~~~~~~-daiv~~d~G~~~~w 388 (550)
T COG0028 317 AKATLEALLEELKPE-------RAAWLEELLEARAAYRDLALEELADDGIKPQYVIKVLRELLPD-DAIVVTDVGQHQMW 388 (550)
T ss_pred HHHHHHHHHHhhhhc-------chHHHHHHHHHHHhhhhhhhhccCCCccCHHHHHHHHHHhCCC-CeEEEeCCcHHHHH
Confidence 999999999887642 24687777665543321 11 1122334899999999999999 99999999999999
Q ss_pred HHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhh
Q 040733 465 AIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544 (643)
Q Consensus 465 ~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 544 (643)
..++++..+|++|+.++++|+||||+|+|||||++.|+|+||+|+|||||+|++|||+|++||++|+++||+||++|||+
T Consensus 389 ~a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~~qEL~Ta~r~~lpv~ivv~nN~~~g~v 468 (550)
T COG0028 389 AARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIVVLNNGGYGMV 468 (550)
T ss_pred HHHhcccCCCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhccHHHHHHHHHhCCCEEEEEEECCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCccccc
Q 040733 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMI 624 (643)
Q Consensus 545 ~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~ 624 (643)
+++|..+|..+..++.+++ .+ |.++||+||+++++|++++||+++|+++++.++|+||||.||++++..|++
T Consensus 469 ~~~q~~~~~~~~~~~~~~~-------~~-f~klAea~G~~g~~v~~~~el~~al~~al~~~~p~lidv~id~~~~~~p~~ 540 (550)
T COG0028 469 RQWQELFYGGRYSGTDLGN-------PD-FVKLAEAYGAKGIRVETPEELEEALEEALASDGPVLIDVVVDPEEAVPPMV 540 (550)
T ss_pred hHHHHHhcCCCcceeecCC-------cc-HHHHHHHcCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCcccCCCCC
Confidence 9999999887656665522 23 999999999999999999999999999999999999999999987788888
Q ss_pred CCCcccc
Q 040733 625 PYDKSFK 631 (643)
Q Consensus 625 ~~~~~~~ 631 (643)
+.+....
T Consensus 541 ~~~~~~~ 547 (550)
T COG0028 541 PLGKANG 547 (550)
T ss_pred Cccchhh
Confidence 8776443
No 3
>PLN02470 acetolactate synthase
Probab=100.00 E-value=3.4e-110 Score=945.44 Aligned_cols=583 Identities=69% Similarity=1.130 Sum_probs=517.4
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEE
Q 040733 58 TDFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVC 136 (643)
Q Consensus 58 ~~~~~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~ 136 (643)
++|-|+|+|+.+++++|+|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+|||+|||
T Consensus 1 ~~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~ 80 (585)
T PLN02470 1 ETFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVC 80 (585)
T ss_pred CCcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEE
Confidence 4799999999999999999999999999999999999999999999766 499999999999999999999999999999
Q ss_pred EEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhc
Q 040733 137 LVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATS 216 (643)
Q Consensus 137 ~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s 216 (643)
++|+|||++|+++||++||.+++|||+|+|+.++...+++.+|++|+..+++++|||+++|.+++++++++++|++.|.+
T Consensus 81 ~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s 160 (585)
T PLN02470 81 IATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASS 160 (585)
T ss_pred EECCCccHHHHHHHHHHHHhcCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHh
Q 040733 217 GRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLT 296 (643)
Q Consensus 217 ~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~l 296 (643)
+|+|||||+||.|++.+++.+.+..+..++.+....+..++++.+++++++|++||||+|++|+|+.++.+++++|+|++
T Consensus 161 ~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvI~~G~g~~~a~~~l~~lae~~ 240 (585)
T PLN02470 161 GRPGPVLVDIPKDIQQQLAVPNWNQPMKLPGYLSRLPKPPEKSQLEQIVRLISESKRPVVYVGGGCLNSSEELREFVELT 240 (585)
T ss_pred CCCCeEEEEecCchhhhhccccccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCChhhhHHHHHHHHHHh
Confidence 99999999999999987753322111111111111112357788999999999999999999999988889999999999
Q ss_pred CCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCC
Q 040733 297 GIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKV 376 (643)
Q Consensus 297 g~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~ 376 (643)
++||++|++|||+||++||+++|++|..+...+++++++||+||+||++++++.++.+..|.++.++||||+|+.+++++
T Consensus 241 ~~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~ 320 (585)
T PLN02470 241 GIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFGVRFDDRVTGKLEAFASRASIVHIDIDPAEIGKN 320 (585)
T ss_pred CCCEEEccCccccCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCeEEEEECCHHHhCCC
Confidence 99999999999999999999999999999988999999999999999999988887665566778999999999999999
Q ss_pred CCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEe
Q 040733 377 KLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIST 456 (643)
Q Consensus 377 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~ 456 (643)
++.++.|++|++.+|++|++.++..... ......|.+.+.+.++++....+....++++..+++.|++.+++ |.||+.
T Consensus 321 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-d~iv~~ 398 (585)
T PLN02470 321 KQPHVSVCADVKLALQGLNKLLEERKAK-RPDFSAWRAELDEQKEKFPLSYPTFGDAIPPQYAIQVLDELTDG-NAIIST 398 (585)
T ss_pred cCCCeEEecCHHHHHHHHHHhhhhcccc-ccchHHHHHHHHHHHHhChhcccCCCCCcCHHHHHHHHHhhCCC-CEEEEE
Confidence 9999999999999999999887643211 11235788777666554432211223579999999999999998 999999
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++..|..++++..+|++|++++++|+|||++|+|||+++|+|+++||+|+|||||+|++|||+|++||++|++|||+
T Consensus 399 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~v~ivV~ 478 (585)
T PLN02470 399 GVGQHQMWAAQWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENLPVKIMVL 478 (585)
T ss_pred CCcHHHHHHHHhcccCCCCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 537 NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
||++||++++.|+..|+.+..+..++.|.......+||.++|++||+++.+|++++||+++|+++++.++|+||||++++
T Consensus 479 NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~i~~ 558 (585)
T PLN02470 479 NNQHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVTRKSDLREAIQKMLDTPGPYLLDVIVPH 558 (585)
T ss_pred eCCcchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 99999999999988777655444444432222234899999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCcccccccccCCCCCC
Q 040733 617 QEHVVPMIPYDKSFKDTILEDDGRAL 642 (643)
Q Consensus 617 ~~~~~p~~~~~~~~~~~~~~~~~~~~ 642 (643)
.+...|+.+.+..+..+...||||++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (585)
T PLN02470 559 QEHVLPMIPGGGTFKDIITEGDGRTK 584 (585)
T ss_pred ccCcCCccCCCCchhhceeccccccC
Confidence 88888888888888889999999996
No 4
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=6.4e-106 Score=908.29 Aligned_cols=552 Identities=38% Similarity=0.678 Sum_probs=485.0
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+++++|+|++.|+++||+||||+||+++++|+++|.+. +|++|.+|||++|+|||+||||+|||||||++|+|||++|+
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~ 82 (572)
T PRK08979 3 MLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNT 82 (572)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHH
Confidence 36899999999999999999999999999999999765 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++||.+++|||+|+|+.++...+++.+|++|+.++++++|||+++|.+++++++.|++|++.|.++++|||||+||
T Consensus 83 l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (572)
T PRK08979 83 ITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLP 162 (572)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 228 VDVQLELAVPNW--NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 228 ~Dv~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
.|++.++++... ......+.+.+. ..+++..+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt 240 (572)
T PRK08979 163 KDCLNPAILHPYEYPESIKMRSYNPT--TSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVST 240 (572)
T ss_pred HhHhhhhhcccccCCcccccccCCCC--CCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEc
Confidence 999987763211 111011111111 124678899999999999999999999997 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
++|||+||++||+++|++|..++..+++++++||+||+||++++++.++.+..+.++.++||||.|+.+++++++.++.|
T Consensus 241 ~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i 320 (572)
T PRK08979 241 LMGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSISKTVRVDIPI 320 (572)
T ss_pred ccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCceEE
Confidence 99999999999999999999999999999999999999999999888876666667789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGVG-FMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++|++.+|++|++.+..+... .......|.+++...+...........+++++.++++.|++.+++ |.+|+.|+|++.
T Consensus 321 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-d~ivv~d~G~~~ 399 (572)
T PRK08979 321 VGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRNCLAYDKSSERIKPQQVIETLYKLTNG-DAYVASDVGQHQ 399 (572)
T ss_pred ecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCchhccCCCCCcCHHHHHHHHHHhcCC-CeEEEECCcHHH
Confidence 999999999999877643211 011224688777665544322211223469999999999999998 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|+.++++.+++++|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|++|||+|++||++|+++||+||++|+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~ 479 (572)
T PRK08979 400 MFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVKIINLNNRFLG 479 (572)
T ss_pred HHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccHHHHHHHHHcCCCeEEEEEeCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC-CCcEEEEEEeCCCCCcc
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET-PGPYLLDVMVSYQEHVV 621 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~-~gp~lIeV~v~~~~~~~ 621 (643)
+++++|+..|+.+.....+ ...+||.++|++||+++++|++.+||+++|+++++. ++|+||||++++++...
T Consensus 480 ~i~~~q~~~~~~~~~~~~~-------~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~~~ 552 (572)
T PRK08979 480 MVKQWQDMIYQGRHSHSYM-------DSVPDFAKIAEAYGHVGIRISDPDELESGLEKALAMKDRLVFVDINVDETEHVY 552 (572)
T ss_pred HHHHHHHHHhCCcccccCC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeCCccccC
Confidence 9999987666543322211 235899999999999999999999999999999985 99999999999888777
Q ss_pred cccCCCccc
Q 040733 622 PMIPYDKSF 630 (643)
Q Consensus 622 p~~~~~~~~ 630 (643)
|+.+.+..+
T Consensus 553 ~~~~~~~~~ 561 (572)
T PRK08979 553 PMQIRGGAM 561 (572)
T ss_pred CccCCCCcH
Confidence 776655333
No 5
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.1e-105 Score=907.27 Aligned_cols=563 Identities=36% Similarity=0.665 Sum_probs=489.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.+|||++|+|||+||+|+|||||||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~ 82 (574)
T PRK07979 3 MLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhh
Confidence 46899999999999999999999999999999999774 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++|+.+++|||+|+|+.++...+++.+|++|+..+++++|||++++.+++++++.|++||+.|.++++|||||+||
T Consensus 83 l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP 162 (574)
T PRK07979 83 ITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLP 162 (574)
T ss_pred HHHHHHHhhcCCCEEEEECCCChhccCCCCCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 228 VDVQLELAVPNW--NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 228 ~Dv~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
.|++.+++...+ ......+.+.+. ..++++.+++++++|.+||||+|++|+|+. ++.++|++|+|++|+||++|
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt 240 (574)
T PRK07979 163 KDILNPANKLPYVWPESVSMRSYNPT--TQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSS 240 (574)
T ss_pred hhhhhhhhccccccCcccccccCCCC--CCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEc
Confidence 999876542111 111011111111 124678899999999999999999999997 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
++|||+||++||+++|++|..++..+++++++||+||+||++++++.++.+..|.+++++||||+|+.++++++..++.|
T Consensus 241 ~~gkg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i 320 (574)
T PRK07979 241 LMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPI 320 (574)
T ss_pred cccCCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEEeCCCCcccccCChhhcCCCCeEEEEECCHHHhCCcccCCeEE
Confidence 99999999999999999999999999999999999999999999888876666667789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGVG-FMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++|++.+|++|++.+...... .......|.+++.+.+...........+++++..+++.|++.+++ |.||+.|+|++.
T Consensus 321 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-d~ivv~d~G~~~ 399 (574)
T PRK07979 321 VGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKG-DAYVTSDVGQHQ 399 (574)
T ss_pred ecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhcCC-CEEEEeCCcHHH
Confidence 999999999999887643211 011235787777665543322211223469999999999999998 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|..+++++.+|++|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|++|||+|++||++|+++||+||++||
T Consensus 400 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~r~~l~v~ivV~NN~~yg 479 (574)
T PRK07979 400 MFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNNRYLG 479 (574)
T ss_pred HHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC---CCcEEEEEEeCCCCC
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET---PGPYLLDVMVSYQEH 619 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~---~gp~lIeV~v~~~~~ 619 (643)
+++++|...|+.+....++ ...+||.++|++||+++++|++.+||+++|+++++. ++|+||||+++++++
T Consensus 480 ~i~~~q~~~~~~~~~~~~~-------~~~~d~~~iA~a~G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lIeV~i~~~~~ 552 (574)
T PRK07979 480 MVKQWQDMIYSGRHSQSYM-------QSLPDFVRLAEAYGHVGIQISHPDELESKLSEALEQVRNNRLVFVDVTVDGSEH 552 (574)
T ss_pred HHHHHHHHhcCCccccccC-------CCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhccCCCCcEEEEEEECCccC
Confidence 9999987766543322211 235899999999999999999999999999999985 999999999999887
Q ss_pred cccccCCCcccccccccCCCCC
Q 040733 620 VVPMIPYDKSFKDTILEDDGRA 641 (643)
Q Consensus 620 ~~p~~~~~~~~~~~~~~~~~~~ 641 (643)
..|+.+.+..+..+....++|+
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~ 574 (574)
T PRK07979 553 VYPMQIRGGGMDEMWLSKTERT 574 (574)
T ss_pred cCCCcCCCCchhhhhccccCCC
Confidence 7777776544433332333553
No 6
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.8e-105 Score=906.53 Aligned_cols=559 Identities=40% Similarity=0.680 Sum_probs=488.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 040733 62 SRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSS 140 (643)
Q Consensus 62 ~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~ 140 (643)
|-..|...++++|+|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|++|||+||++|+
T Consensus 13 ~~~~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~ 92 (587)
T PRK06965 13 SLSPPAADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTS 92 (587)
T ss_pred ccCCCchhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 335667789999999999999999999999999999999999775 4999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCC
Q 040733 141 GPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPG 220 (643)
Q Consensus 141 GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~G 220 (643)
|||++|+++||++||.+++|||+|+|+.++...+++.+|++||.++++++|||++++.+++++++.+++|++.|+++++|
T Consensus 93 GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~G 172 (587)
T PRK06965 93 GPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPG 172 (587)
T ss_pred CccHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCCcccccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCC
Q 040733 221 PVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGI 298 (643)
Q Consensus 221 PV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~ 298 (643)
||||+||.|++.+++......+...+.+.+. ..++++.+++++++|.+||||+||+|+|++ ++.+++.+|+|++|+
T Consensus 173 PV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~ 250 (587)
T PRK06965 173 PVVVDIPKDVSKTPCEYEYPKSVEMRSYNPV--TKGHSGQIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLADLLGY 250 (587)
T ss_pred eEEEEeChhhhhChhccccCccccccCCCCC--CCCCHHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHHHHhCC
Confidence 9999999999987763211111111111111 124778899999999999999999999997 678999999999999
Q ss_pred ceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccC-CceEEEEcCCcccccCCC
Q 040733 299 PVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT-RAKIVHIDIDSNEIGKVK 377 (643)
Q Consensus 299 PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~-~~~iI~Id~d~~~i~~~~ 377 (643)
||++|++|||+||++||+++|++|..++..+++++++||+||+||++++++.++++..|.+ +.++||||+|+.++++++
T Consensus 251 pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 330 (587)
T PRK06965 251 PVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDRVIGNPAHFASRPRKIIHIDIDPSSISKRV 330 (587)
T ss_pred CEEEccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCceEEEEeCCHHHhCCcC
Confidence 9999999999999999999999999999999999999999999999999887765544544 478999999999999999
Q ss_pred CCCeeEecCHHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEe
Q 040733 378 LPDVSICADAKLVFNRMNMILESKGVG-FMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIST 456 (643)
Q Consensus 378 ~~~~~i~~D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~ 456 (643)
+.++.+++|++.+|++|++.+...... .......|.+++.+.+.+..........++++..+++.|++.+++ |.|++.
T Consensus 331 ~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-d~ii~~ 409 (587)
T PRK06965 331 KVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDCLKYDRESEIIKPQYVVEKLWELTDG-DAFVCS 409 (587)
T ss_pred CCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccccCCCcCHHHHHHHHHhhCCC-CeEEEe
Confidence 999999999999999999877542211 111235687776665543322111123569999999999999998 999999
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++..|..++++.++|++|+.++++|+|||++|+|||+++|+|+|+||+|+|||||+|++|||+|++||++|+++||+
T Consensus 410 d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~eL~Ta~r~~lpviivV~ 489 (587)
T PRK06965 410 DVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQYDTPVKIISL 489 (587)
T ss_pred CCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-CCCcEEEEEEeC
Q 040733 537 NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-TPGPYLLDVMVS 615 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-~~gp~lIeV~v~ 615 (643)
||++|+++++.|...|..+....++ ...+||.++|++||+++++|++.+||+++|+++++ .++|+||||.++
T Consensus 490 NN~~~~~i~~~q~~~~~~~~~~~~~-------~~~~d~~~iA~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lieV~i~ 562 (587)
T PRK06965 490 NNRYLGMVRQWQEIEYSKRYSHSYM-------DALPDFVKLAEAYGHVGMRIEKTSDVEPALREALRLKDRTVFLDFQTD 562 (587)
T ss_pred ECCcchHHHHHHHHhcCCCccccCC-------CCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999999999987766544332221 13589999999999999999999999999999997 489999999999
Q ss_pred CCCCcccccCCCccc
Q 040733 616 YQEHVVPMIPYDKSF 630 (643)
Q Consensus 616 ~~~~~~p~~~~~~~~ 630 (643)
+++...|+++.+..+
T Consensus 563 ~~~~~~p~~~~~~~~ 577 (587)
T PRK06965 563 PTENVWPMVQAGKGI 577 (587)
T ss_pred cccccCCccCCCCch
Confidence 988887877765433
No 7
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=100.00 E-value=4e-105 Score=902.31 Aligned_cols=547 Identities=30% Similarity=0.489 Sum_probs=475.2
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N 146 (643)
.|+++|+|++.|+++||+||||+||+++++|+++|.+. +|++|.+|||++|+||||||||++ |++|||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 46899999999999999999999999999999999765 499999999999999999999999 9999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++||.+++|||+|+|+.++...+++.+|++||.++++++|||++++.++++++++|++||+.|+++|+|||||+|
T Consensus 82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~i 161 (588)
T TIGR01504 82 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDL 161 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++.++++.........+ ...+.++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|+
T Consensus 162 P~Dv~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~ 237 (588)
T TIGR01504 162 PFDVQVAEIEFDPDTYEPLP----VYKPAATRAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTL 237 (588)
T ss_pred CcchhhcccCCccccccccc----CCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhhhHHHHHHHHHHhCCCeEEcC
Confidence 99999876532111000111 111235788999999999999999999999997 678999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCC-CcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 305 MGLGLFPCTDELCLRMVGMF-GTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~-~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
+|||+||++||+++|++|.. ++..+++++++||+||+||++++++.++.+..+.++.++||||.|+.++++++.+++.|
T Consensus 238 ~gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~aD~iL~lG~~l~~~~t~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i 317 (588)
T TIGR01504 238 MGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKFVHVDIEPTQIGRVFAPDLGI 317 (588)
T ss_pred ccCCCCCCCChhhCcCCCCCCCcHHHHHHHHhCCEEEEECCCCCccccCcccccCCCCeEEEeeCCHHHhcCcCCCCeEE
Confidence 99999999999999999876 67888899999999999999999888876666667788999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGVGF-MFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++|++.+|++|.+.+....... ......|.+++.+.+.+........+.+++|..+++.|++.+++ |.+|+.|+|++.
T Consensus 318 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~-d~ivv~D~G~~~ 396 (588)
T TIGR01504 318 VSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGR-DVCYVTTIGLSQ 396 (588)
T ss_pred EeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHHhCCC-CCEEEECCcHHH
Confidence 9999999999988764321110 11235788777665443321111223469999999999999999 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|..++++..+|++|++++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++||+||++||
T Consensus 397 ~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~iV~NN~~yg 476 (588)
T TIGR01504 397 IAGAQMLHVYKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPYIHVLVNNAYLG 476 (588)
T ss_pred HHHHHhccccCCCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccC--CCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEEEEEeCC
Q 040733 543 MNVEYEDRYFEANRANSFLG--DPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLLDVMVSY 616 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g--~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lIeV~v~~ 616 (643)
++++.|...++.......+. .+.......+||.++|++||+++.+|++++||+++|+++++ .++|+||||++++
T Consensus 477 ~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 477 LIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred HHHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 99998876543211111110 01111123589999999999999999999999999999995 7999999999998
Q ss_pred CCCc
Q 040733 617 QEHV 620 (643)
Q Consensus 617 ~~~~ 620 (643)
++..
T Consensus 557 ~~~~ 560 (588)
T TIGR01504 557 VTNI 560 (588)
T ss_pred ccCC
Confidence 8763
No 8
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=8.4e-105 Score=900.82 Aligned_cols=552 Identities=44% Similarity=0.729 Sum_probs=483.0
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
+.++++|+|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 9 ~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 88 (595)
T PRK09107 9 RQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN 88 (595)
T ss_pred hhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccHhH
Confidence 457999999999999999999999999999999999765 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++||.+++|||+|+|+.++...+.+.+|++||..+++++|||++++.+++++++++++|++.|+++++|||||+|
T Consensus 89 ~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~i 168 (595)
T PRK09107 89 AVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDI 168 (595)
T ss_pred HHHHHHHHhhcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--h--hHHHHHHHHHHhCCcee
Q 040733 227 PVDVQLELAVPNWNQPCK-LPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--N--SSEELRKFVGLTGIPVT 301 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~--~~~~l~~lae~lg~PV~ 301 (643)
|.|++.+++......... ...+.+ .+.++.+.+++++++|.+||||+|++|+|+. + +.+++++|+|++|+||+
T Consensus 169 P~Dv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~a~~~L~~A~rPvil~G~g~~~~~~~a~~~l~~lae~lg~pv~ 246 (595)
T PRK09107 169 PKDVQFATGTYTPPQKAPVHVSYQP--KVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELVELTGFPIT 246 (595)
T ss_pred CCChhhcccccccccccccccCCCC--CCCCCHHHHHHHHHHHHhCCCcEEEECCcccccchhHHHHHHHHHHHHCCCEE
Confidence 999987654311111000 011111 1235778999999999999999999999986 3 67899999999999999
Q ss_pred ecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCe
Q 040733 302 CTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDV 381 (643)
Q Consensus 302 tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~ 381 (643)
+|++|||+||++||+++|++|..++..+++++++||+||+||++++++.++.+..|.++.++||||+|+.+++++++.++
T Consensus 247 tt~~gkg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~ 326 (595)
T PRK09107 247 STLMGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDRITGRLDAFSPNSKKIHIDIDPSSINKNVRVDV 326 (595)
T ss_pred ECccccccCCCCCCcccCCCCCCccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhCCCCCCCe
Confidence 99999999999999999999998999999999999999999999998888776667777889999999999999999999
Q ss_pred eEecCHHHHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCCh
Q 040733 382 SICADAKLVFNRMNMILESKGVGF-MFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQ 460 (643)
Q Consensus 382 ~i~~D~~~~L~~L~~~l~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~ 460 (643)
.|++|++.+|++|++.+....... ......|.+++.+.+...........+++++..+++.|++++++.|.+++.|+|+
T Consensus 327 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~d~iv~~d~G~ 406 (595)
T PRK09107 327 PIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNSLAYTPSDDVIMPQYAIQRLYELTKGRDTYITTEVGQ 406 (595)
T ss_pred EEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHHhCCCCCeEEEECCcH
Confidence 999999999999998876432110 1123567766655544322111112356999999999999996338999999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+..|+.+++++++|++|+.++++|+|||++|+|||+++|+|+|+||+|+|||||+|++|||+|++||++|+++||+||++
T Consensus 407 ~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvi~vV~NN~~ 486 (595)
T PRK09107 407 HQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYNLPVKIFILNNQY 486 (595)
T ss_pred HHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHHHHHHhCCCeEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
|+++++.|...++.+....++ ...+||.++|++||+++++|++++||+++|+++++.++|+||||.+++.+..
T Consensus 487 y~~i~~~q~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~~~ 559 (595)
T PRK09107 487 MGMVRQWQQLLHGNRLSHSYT-------EAMPDFVKLAEAYGAVGIRCEKPGDLDDAIQEMIDVDKPVIFDCRVANLENC 559 (595)
T ss_pred cHHHHHHHHHHhCCccccccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCcccc
Confidence 999999887766544332211 2358999999999999999999999999999999999999999999988776
Q ss_pred ccccCCCc
Q 040733 621 VPMIPYDK 628 (643)
Q Consensus 621 ~p~~~~~~ 628 (643)
.|+++.+.
T Consensus 560 ~~~~~~~~ 567 (595)
T PRK09107 560 FPMIPSGK 567 (595)
T ss_pred CCccCCCC
Confidence 67666553
No 9
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.1e-104 Score=896.89 Aligned_cols=554 Identities=39% Similarity=0.672 Sum_probs=483.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++|+|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+||||||||+||||+||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~ 82 (574)
T PRK06466 3 LLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 46899999999999999999999999999999999765 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++||.+++|||+|+|+.++...+++.+|++||..+++++|||++++.+++++++.+++||+.|+++|+|||||+||
T Consensus 83 l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP 162 (574)
T PRK06466 83 ITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIP 162 (574)
T ss_pred HHHHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 228 VDVQLELAVPN--WNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 228 ~Dv~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
.|++.+..... .......+.+.+. ..++.+.+++++++|.+||||+|++|.|+. ++.+++.+|+|++|+||++|
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt 240 (574)
T PRK06466 163 KDMTNPAEKFEYEYPKKVKLRSYSPA--VRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVTNT 240 (574)
T ss_pred HhHhhhhhccccccCcccccccCCCC--CCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEc
Confidence 99975432111 0000000101111 124677899999999999999999999997 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
++|||+||++||+++|++|..+...++++++++|+||+||++++++.++++..+.+++++||||.|+.+++++++.++.+
T Consensus 241 ~~~kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aD~il~vG~~~~~~~~~~~~~~~~~~~vi~id~d~~~i~~~~~~~~~i 320 (574)
T PRK06466 241 LMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARFDDRVTNGPAKFCPNAKIIHIDIDPASISKTIKADIPI 320 (574)
T ss_pred CccCCCCCCCChhhcCCCccccCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCCeEE
Confidence 99999999999999999998898899999999999999999999888876665667789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhCCC-ccc-CCCCCCCHHHHHHHHHhcCCCCCeEEEeCCCh
Q 040733 384 CADAKLVFNRMNMILESKGVG-FMFDFSAWREELHEQKKKYPF-SYK-TFGEEIPPQYAIQILNELTDDEETIISTGVGQ 460 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~~~~~~~~~~~-~~~-~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~ 460 (643)
++|++.+|++|++.+...... .......|.+++.+.+.+... ... ....++++..+++.|++.+++ |.||+.|+|+
T Consensus 321 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-~~iv~~d~g~ 399 (574)
T PRK06466 321 VGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGRHGLFPYDKGDGGIIKPQQVVETLYEVTNG-DAYVTSDVGQ 399 (574)
T ss_pred ecCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcchhcccCCCCCcCHHHHHHHHHhhCCC-CeEEEECCcH
Confidence 999999999999877542110 011234687777666544321 111 123469999999999999998 9999999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+..|..++++.++|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++|||+|+++||+||++
T Consensus 400 ~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpv~ivV~NN~~ 479 (574)
T PRK06466 400 HQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGLPVKIINLNNGA 479 (574)
T ss_pred HHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC-CCcEEEEEEeCCCCC
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET-PGPYLLDVMVSYQEH 619 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~-~gp~lIeV~v~~~~~ 619 (643)
|+++++.|+..|..+....++ ...+||.++|++||+++++|++.+||+++|+++++. ++|+||||++++++.
T Consensus 480 y~~i~~~q~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~p~lIev~i~~~~~ 552 (574)
T PRK06466 480 LGMVRQWQDMQYEGRHSHSYM-------ESLPDFVKLAEAYGHVGIRITDLKDLKPKLEEAFAMKDRLVFIDIYVDRSEH 552 (574)
T ss_pred cHHHHHHHHHhcCCceeecCC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeCCccc
Confidence 999999987766544332211 235899999999999999999999999999999985 999999999999888
Q ss_pred cccccCCCccccc
Q 040733 620 VVPMIPYDKSFKD 632 (643)
Q Consensus 620 ~~p~~~~~~~~~~ 632 (643)
..|+.+.+..+..
T Consensus 553 ~~~~~~~~~~~~~ 565 (574)
T PRK06466 553 VYPMQIADGSMRD 565 (574)
T ss_pred cCCccCCCCchhh
Confidence 8887776543433
No 10
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=3.8e-104 Score=900.44 Aligned_cols=552 Identities=42% Similarity=0.699 Sum_probs=485.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC----CCeEEecCChhHHHHHHHHHHHHhCCcEEEEE
Q 040733 63 RFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS----NIRSILPRHEQGGIFAAEGYARSSGTPGVCLV 138 (643)
Q Consensus 63 ~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~----~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~ 138 (643)
...++++++++|+|++.|+++||+||||+||+.+++|+++|.+. +|++|.+|||++|+|||+||||+|||||||++
T Consensus 12 ~~~~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~ 91 (616)
T PRK07418 12 TTVTPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFG 91 (616)
T ss_pred cccCCccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEE
Confidence 34556788999999999999999999999999999999999742 39999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCC
Q 040733 139 SSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGR 218 (643)
Q Consensus 139 t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~ 218 (643)
|+|||++|+++||++|+.|++|||+|+||.++...+++.||++|+..+++++|||+++|.++++++++|++||+.|.+++
T Consensus 92 t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~ 171 (616)
T PRK07418 92 TSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGR 171 (616)
T ss_pred CCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCCCcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcccchhhhccCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHH
Q 040733 219 PGPVLIDIPVDVQLELAVPNWNQP--CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVG 294 (643)
Q Consensus 219 ~GPV~i~iP~Dv~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae 294 (643)
+|||||+||.|++.+++......+ ...+.+. ..+.++++.+++++++|++||||+|++|+|+. ++.++|++|||
T Consensus 172 ~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~L~~AkrPvI~~G~g~~~~~a~~~l~~lae 249 (616)
T PRK07418 172 PGPVLIDIPKDVGQEEFDYVPVEPGSVKPPGYR--PTVKGNPRQINAALKLIEEAERPLLYVGGGAISAGAHAELKELAE 249 (616)
T ss_pred CCcEEEecchhhhhchhcccccCccccccCCCC--CCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCcccHHHHHHHHHH
Confidence 999999999999987653110000 0011111 11236788999999999999999999999997 78899999999
Q ss_pred HhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCccccc
Q 040733 295 LTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIG 374 (643)
Q Consensus 295 ~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~ 374 (643)
++|+||++|++|||+||++||+++|.+|..++..+++++++||+||+||++++++.++.+..|.++.++||||+|+.+++
T Consensus 250 ~l~~pV~tt~~gkg~~p~~hpl~~G~~G~~g~~~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig 329 (616)
T PRK07418 250 RFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPAEVG 329 (616)
T ss_pred HHCCCEEEccCCCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEcCCCCccccCChhhcCCCCeEEEEeCCHHHhC
Confidence 99999999999999999999999999999999999999999999999999999888876666777789999999999999
Q ss_pred CCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEE
Q 040733 375 KVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETII 454 (643)
Q Consensus 375 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv 454 (643)
+++..++.|++|++.+|++|++.++.... ......|.+++.++++.+........+++++..+++.|++.++ |.++
T Consensus 330 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~~~--d~i~ 405 (616)
T PRK07418 330 KNRRPDVPIVGDVRKVLVKLLERSLEPTT--PPRTQAWLERINRWKQDYPLVVPPYEGEIYPQEVLLAVRDLAP--DAYY 405 (616)
T ss_pred CccCCCeEEecCHHHHHHHHHHhhhcccc--ccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHhhCC--CcEE
Confidence 99999999999999999999988754221 1123578888877665543211122457999999999999987 5888
Q ss_pred EeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEE
Q 040733 455 STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKIL 534 (643)
Q Consensus 455 ~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 534 (643)
+.|+|++..|..++++ .+|++|++++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++|
T Consensus 406 ~~D~G~~~~~~~~~~~-~~p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpvi~v 484 (616)
T PRK07418 406 TTDVGQHQMWAAQFLR-NGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNIQELGTLAQYGINVKTV 484 (616)
T ss_pred EECChHHHHHHHHhhh-cCCCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhhHHHHHHHHHhCCCeEEE
Confidence 8999999999999998 568899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEe
Q 040733 535 LINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMV 614 (643)
Q Consensus 535 V~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v 614 (643)
|+||++||++++.|+..|+.++....+ ....+||.++|++||+++++|++++||+++|+++++.++|+||||++
T Consensus 485 V~NN~~~g~i~~~q~~~~~~~~~~~~~------~~~~~d~~~~A~a~G~~g~~V~~~~el~~al~~a~~~~~p~lIeV~i 558 (616)
T PRK07418 485 IINNGWQGMVRQWQESFYGERYSASNM------EPGMPDFVKLAEAFGVKGMVISERDQLKDAIAEALAHDGPVLIDVHV 558 (616)
T ss_pred EEECCcchHHHHHHHHhcCCCceeecC------CCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999999999887666544332211 11358999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCC
Q 040733 615 SYQEHVVPMIPYD 627 (643)
Q Consensus 615 ~~~~~~~p~~~~~ 627 (643)
+++++..|+.+.+
T Consensus 559 ~~~~~~~~~~~~~ 571 (616)
T PRK07418 559 RRDENCYPMVPPG 571 (616)
T ss_pred cCccccCCccCCC
Confidence 9888766766654
No 11
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2.3e-104 Score=893.90 Aligned_cols=544 Identities=40% Similarity=0.704 Sum_probs=481.6
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
..++++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+|||++||++|+|||++|
T Consensus 8 ~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 87 (566)
T PRK07282 8 SPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATN 87 (566)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 567999999999999999999999999999999999765 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.+++|||+|+|+.++...+++.+|++|+..+++++|||++++.+++++++++++|++.|+++|+|||||+|
T Consensus 88 ~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 167 (566)
T PRK07282 88 AITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDL 167 (566)
T ss_pred HHHHHHHHhhcCCCEEEEecccccccCCCCCccccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++.+++..........+.+.+. ..+++..+++++++|.+||||+||+|+|+. ++.+++++|+|++|+||++|+
T Consensus 168 P~Dv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~pv~tt~ 245 (566)
T PRK07282 168 PKDVSALETDFIYDPEVNLPSYQPT--LEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERYQIPVVTTL 245 (566)
T ss_pred ChhhhhhhhcccccccccccCCCCC--CCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHhCCCEEecc
Confidence 9999987763211110111111111 125678899999999999999999999997 678999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+|||+||++||+++|.+|..++..+++++++||+||+||++++++.++.+..|.++.++||||+|+.+++++++.++.++
T Consensus 246 ~gkg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~ 325 (566)
T PRK07282 246 LGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIGKIIKTDIPVV 325 (566)
T ss_pred ccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEe
Confidence 99999999999999999988888899999999999999999998887766567777899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHH
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMW 464 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~ 464 (643)
+|++.+|++|++.++.+ .....|.+++.+.+.+... .....+++++..+++.|++.+++ |.+|+.|+|++..|
T Consensus 326 ~D~~~~L~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~~-~~ivv~d~G~~~~~ 398 (566)
T PRK07282 326 GDAKKALQMLLAEPTVH-----NNTEKWIEKVTKDKNRVRS-YDKKERVVQPQAVIERIGELTNG-DAIVVTDVGQHQMW 398 (566)
T ss_pred cCHHHHHHHHHHhhccc-----CChHHHHHHHHHHHHhchh-ccCcCCCcCHHHHHHHHHhhcCC-CeEEEECCcHHHHH
Confidence 99999999999876532 1235788777655444321 11223579999999999999998 99999999999999
Q ss_pred HHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhh
Q 040733 465 AIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544 (643)
Q Consensus 465 ~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 544 (643)
..++++.++|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++||+||++|+++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i 478 (566)
T PRK07282 399 AAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPIKVVMLNNHSLGMV 478 (566)
T ss_pred HHHhcccCCCCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCccccc
Q 040733 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMI 624 (643)
Q Consensus 545 ~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~ 624 (643)
++.|...|+.+.....+ ...+||+++|++||+++++|++.+||+++|+ ++..++|+||||.+++.++..|+.
T Consensus 479 ~~~q~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~~~~v~~~~el~~al~-~~~~~~p~lIeV~v~~~~~~~~~~ 550 (566)
T PRK07282 479 RQWQESFYEGRTSESVF-------DTLPDFQLMAQAYGIKHYKFDNPETLAQDLE-VITEDVPMLIEVDISRKEHVLPMV 550 (566)
T ss_pred HHHHHHHhCCCcccccC-------CCCCCHHHHHHHCCCEEEEECCHHHHHHHHH-HhcCCCCEEEEEEeCCccccCCcc
Confidence 99987766544322211 2358999999999999999999999999997 467799999999999988777766
Q ss_pred CCCc
Q 040733 625 PYDK 628 (643)
Q Consensus 625 ~~~~ 628 (643)
+.+.
T Consensus 551 ~~~~ 554 (566)
T PRK07282 551 PAGK 554 (566)
T ss_pred CCCC
Confidence 6543
No 12
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=100.00 E-value=4.2e-104 Score=891.02 Aligned_cols=536 Identities=44% Similarity=0.743 Sum_probs=482.1
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
|+++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||||+||+|+||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~ 80 (548)
T PRK08978 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLIT 80 (548)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 68999999999999999999999999999999997767999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
||++|+.+++|||+|+|++++...+++.+|++||..+++++|||++++.+++++++++++||+.|.++++|||||+||.|
T Consensus 81 ~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 81 GLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred HHHHHhhcCCCEEEEecCCCccccCCCCCcccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCC
Q 040733 230 VQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGL 307 (643)
Q Consensus 230 v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gk 307 (643)
++.+++.. +.+ .+.. .....++++.+++++++|.+||||+|++|.|+. ++.+++++|||++|+||++|++||
T Consensus 161 v~~~~~~~--~~~--~~~~--~~~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk 234 (548)
T PRK08978 161 IQLAEGEL--EPH--LTTV--ENEPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKGL 234 (548)
T ss_pred hhhccccc--ccc--cccc--CCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccccC
Confidence 98876531 111 1111 111235788899999999999999999999987 678999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCH
Q 040733 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADA 387 (643)
Q Consensus 308 g~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~ 387 (643)
|+||++||+++|.+|..+...+++++++||+||+||+++++..++++..|.++.++||||.|+.++++++..++.|++|+
T Consensus 235 g~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~ 314 (548)
T PRK08978 235 GAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHLDIDPAEINKLRQAHVALQGDL 314 (548)
T ss_pred CCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCccccCCccccCCCCeEEEEECCHHHhCCCCCCCeEEecCH
Confidence 99999999999999988888999999999999999999998887766667777899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHH
Q 040733 388 KLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQ 467 (643)
Q Consensus 388 ~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~ 467 (643)
+.+|++|.+.+. ...|.+++.+.+.+....+.....++++..+++.|++.+++ +.+++.|+|++..|..+
T Consensus 315 ~~~l~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~iiv~d~g~~~~~~~~ 384 (548)
T PRK08978 315 NALLPALQQPLN---------IDAWRQHCAQLRAEHAWRYDHPGEAIYAPALLKQLSDRKPA-DTVVTTDVGQHQMWVAQ 384 (548)
T ss_pred HHHHHHHHHhcc---------chHHHHHHHHHHHhCchhccCCCCCcCHHHHHHHHHHhCCC-CcEEEecCcHHHHHHHH
Confidence 999999986542 13688877766554332222223579999999999999998 99999999999999999
Q ss_pred hccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHH
Q 040733 468 FYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEY 547 (643)
Q Consensus 468 ~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~ 547 (643)
+++.+++++|++++++|+|||++|+|||++++.|+++||+|+|||||+|++|||+|++|+++|+++||+||++||+++++
T Consensus 385 ~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~ 464 (548)
T PRK08978 385 HMRFTRPENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQRLGMVRQW 464 (548)
T ss_pred hcccCCCCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCCC
Q 040733 548 EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYD 627 (643)
Q Consensus 548 q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~~ 627 (643)
|...|+.+.....+ ...+||.++|++||+++++|++++||+++|+++++.++|.||||++++++...|.++.+
T Consensus 465 ~~~~~~~~~~~~~~-------~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~id~~~~~~~~~~~~ 537 (548)
T PRK08978 465 QQLFFDERYSETDL-------SDNPDFVMLASAFGIPGQTITRKDQVEAALDTLLNSEGPYLLHVSIDELENVWPLVPPG 537 (548)
T ss_pred HHHHhCCcceecCC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCcccccccCCCC
Confidence 87766544332211 24589999999999999999999999999999999999999999999998887777765
Q ss_pred c
Q 040733 628 K 628 (643)
Q Consensus 628 ~ 628 (643)
.
T Consensus 538 ~ 538 (548)
T PRK08978 538 A 538 (548)
T ss_pred C
Confidence 4
No 13
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=7.9e-104 Score=893.11 Aligned_cols=561 Identities=36% Similarity=0.616 Sum_probs=490.6
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhh---CC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR---SN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~---~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
++++|+|++.|+++||++|||+||+.+++|+++|.+ ++ |++|.+|||++|+|||+||+|+||+|+||++|+|||++
T Consensus 2 ~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 81 (572)
T PRK06456 2 PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTT 81 (572)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH
Confidence 479999999999999999999999999999999964 34 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
|+++||++|+.+++|||+|+||+++...+++.+|++||.++++++|||++++.+++++++.+++||+.|+++++|||||+
T Consensus 82 N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~ 161 (572)
T PRK06456 82 NLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVID 161 (572)
T ss_pred HHHHHHHHHHhhCCCEEEEecCCCccccCCCCccccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceee
Q 040733 226 IPVDVQLELAVPN-WNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 226 iP~Dv~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~t 302 (643)
||.|++.+++... .......+.+. ..+..++++.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++
T Consensus 162 iP~Dv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~t 240 (572)
T PRK06456 162 IPRDIFYEKMEEIKWPEKPLVKGYR-DFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAELLHIPIVS 240 (572)
T ss_pred cChhHhhcccccccccccccccCCC-CCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccchHHHHHHHHHHhCCCEEE
Confidence 9999998775321 11000001111 111235778899999999999999999999997 6789999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccC-CceEEEEcCCcccccCCCCCCe
Q 040733 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT-RAKIVHIDIDSNEIGKVKLPDV 381 (643)
Q Consensus 303 t~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~-~~~iI~Id~d~~~i~~~~~~~~ 381 (643)
|++|||+||++||+++|++|..|+..+++++++||+||+||++++++.++.+..+.+ +.++||||+|+.++++++..++
T Consensus 241 t~~gkg~i~~~hp~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~ 320 (572)
T PRK06456 241 TFPGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTDGEKAIKVDV 320 (572)
T ss_pred cCccCcCCCCCCccccccCCCCCCHHHHHHHHhCCEEEEECCCCchhhccccccccCCCCeEEEEeCChHHhCCccCCCe
Confidence 999999999999999999999998888999999999999999998887766655543 6789999999999999999999
Q ss_pred eEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc-cCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCCh
Q 040733 382 SICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY-KTFGEEIPPQYAIQILNELTDDEETIISTGVGQ 460 (643)
Q Consensus 382 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~ 460 (643)
.+++|++.+|++|.+.+..... ......|.+++...++.+.... .....++++..+++.|++.+++ |.+|+.|+|+
T Consensus 321 ~i~~D~~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-~~ii~~d~g~ 397 (572)
T PRK06456 321 GIYGNAKIILRELIKAITELGQ--KRDRSAWLKRVKEYKEYYSQFYYTEENGKLKPWKIMKTIRQALPR-DAIVTTGVGQ 397 (572)
T ss_pred EEecCHHHHHHHHHHHhhhccc--ccccHHHHHHHHHHHHhchhhcccccCCCcCHHHHHHHHHHhCCC-CEEEEECCcH
Confidence 9999999999999987764211 1123568877766554433211 1223469999999999999999 9999999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+..|..+++...+|.+|+.++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|++||++|+++||+||++
T Consensus 398 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~i~ivV~NN~~ 477 (572)
T PRK06456 398 HQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVDEHIPVISVIFDNRT 477 (572)
T ss_pred HHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcchHHHHHHHHhCCCeEEEEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
|||++++|+..|+.+.....+ ...+||.++|++||+++++|++.+||+++|+++++.++|+||||.++++++.
T Consensus 478 yg~i~~~q~~~~~~~~~~~~~-------~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~v~~~~~~ 550 (572)
T PRK06456 478 LGLVRQVQDLFFGKRIVGVDY-------GPSPDFVKLAEAFGALGFNVTTYEDIEKSLKSAIKEDIPAVIRVPVDKEELA 550 (572)
T ss_pred hHHHHHHHHHhhCCCcccccC-------CCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 999999988776543322211 1358999999999999999999999999999999999999999999998888
Q ss_pred ccccCCCcccccccccCCCCCC
Q 040733 621 VPMIPYDKSFKDTILEDDGRAL 642 (643)
Q Consensus 621 ~p~~~~~~~~~~~~~~~~~~~~ 642 (643)
.|+.+.+..++.+... ++|.+
T Consensus 551 ~~~~~~~~~~~~~~~~-~~~~~ 571 (572)
T PRK06456 551 LPTLPPGGRLKQVILR-DPRKS 571 (572)
T ss_pred CCCCCCCCchhhhhcc-CCcCC
Confidence 8888877666666555 66644
No 14
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.1e-103 Score=887.65 Aligned_cols=543 Identities=46% Similarity=0.765 Sum_probs=483.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
.++++|+|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+||||||||+||+||||++|+|||++|++
T Consensus 14 ~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~ 93 (570)
T PRK06725 14 EVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATNLV 93 (570)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHH
Confidence 57999999999999999999999999999999999876799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+||++||.+++|||+|+|+.++...+++.+|++|+..+++++|||++++.++++++++|++||+.|.++|+|||||+||.
T Consensus 94 ~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 94 TGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred HHHHHHhhcCcCEEEEecCCCcccccCCCCcccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCC
Q 040733 229 DVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 229 Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|++.+++...+......+.+.. ...++++.+++++++|++||||+|++|+|+. ++.++|.+|||++|+||++|++|
T Consensus 174 Dv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~~ 251 (570)
T PRK06725 174 DVQNEKVTSFYNEVVEIPGYKP--EPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLMG 251 (570)
T ss_pred chhhcccccccCcccccccCCC--CCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEECCcc
Confidence 9998776321111111111111 1236788899999999999999999999997 67899999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
||.||++||+++|++|..++..+++++++||+||+||++++++.++.+..+.+++++||||.|+.+++++++.++.|++|
T Consensus 252 kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~gD 331 (570)
T PRK06725 252 LGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFHKNVAVEYPVVGD 331 (570)
T ss_pred CcCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEEecC
Confidence 99999999999999999999889999999999999999999888876655667778999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHH
Q 040733 387 AKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAI 466 (643)
Q Consensus 387 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~ 466 (643)
+..+|++|++.+... ....|.+++.+.+.+++.......+++++..+++.|++.+++ |.||+.|+|++..|..
T Consensus 332 ~~~~l~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-d~iiv~d~g~~~~~~~ 404 (570)
T PRK06725 332 VKKALHMLLHMSIHT------QTDEWLQKVKTWKEEYPLSYKQKESELKPQHVINLVSELTNG-EAIVTTEVGQHQMWAA 404 (570)
T ss_pred HHHHHHHHHHhcccc------CcHHHHHHHHHHHHhChhhhcccCCCcCHHHHHHHHHhhCCC-CcEEEeCCcHHHHHHH
Confidence 999999998876431 124687777666554432111123569999999999999999 9999999999999999
Q ss_pred HhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 467 QFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 467 ~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
++++.+.|++|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|+++||+|+++|++|+++||+||++|+++++
T Consensus 405 ~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~Ta~~~~lpi~~vV~NN~~~~~~~~ 484 (570)
T PRK06725 405 HFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVFIINNKFLGMVRQ 484 (570)
T ss_pred HhccccCCCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccHHHHHHHHHhCCCeEEEEEECCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPY 626 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~ 626 (643)
.|...|+.+.... ....+||.++|++||+++++|++.+||+++++++++.++|+||||++++++...|+++.
T Consensus 485 ~q~~~~~~~~~~~--------~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~id~~~~~~~~~~~ 556 (570)
T PRK06725 485 WQEMFYENRLSES--------KIGSPDFVKVAEAYGVKGLRATNSTEAKQVMLEAFAHEGPVVVDFCVEEGENVFPMVPP 556 (570)
T ss_pred HHHHhcCCccccC--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCccccCCccCC
Confidence 8876665433222 12368999999999999999999999999999999999999999999988876666665
Q ss_pred Cc
Q 040733 627 DK 628 (643)
Q Consensus 627 ~~ 628 (643)
+.
T Consensus 557 ~~ 558 (570)
T PRK06725 557 NK 558 (570)
T ss_pred CC
Confidence 43
No 15
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.5e-103 Score=889.44 Aligned_cols=549 Identities=45% Similarity=0.754 Sum_probs=487.0
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
++.++++|+|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 13 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N 92 (571)
T PRK07710 13 EKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGATN 92 (571)
T ss_pred cccchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 44579999999999999999999999999999999998767999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.+++|||+||||+++...+++.+|++||..+++++|||++++.+++++++.+++|++.|.++|+|||||+|
T Consensus 93 ~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 172 (571)
T PRK07710 93 VVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDI 172 (571)
T ss_pred HHHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++.+++...+.....++.+.+. ..+++..+++++++|++||||+|++|+|+. ++.+++++|+|++|+||++|+
T Consensus 173 P~Dv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~ 250 (571)
T PRK07710 173 PKDMVVEEGEFCYDVQMDLPGYQPN--YEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELTSYAEQQEIPVVHTL 250 (571)
T ss_pred ChhHhhccccccccccccccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEECCCcCccchHHHHHHHHHHhCCCEEEcC
Confidence 9999987653211111112221111 125778899999999999999999999986 577899999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+|||.||++||+++|++|..+...++++++++|+||+||++++++.++.+..|.++.++||||+|+.+++++++.++.++
T Consensus 251 ~~kg~i~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~ 330 (571)
T PRK07710 251 LGLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRVTGNLAYFAKEATVAHIDIDPAEIGKNVPTEIPIV 330 (571)
T ss_pred ccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEEECCHHHhcCcCCCCeEEe
Confidence 99999999999999999999999999999999999999999998888776667777899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHH
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMW 464 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~ 464 (643)
+|++.+|++|++.+... .....|.+++...+.+.........+++++..+++.|++.+++ +.+++.|+|++..|
T Consensus 331 ~D~~~~l~~L~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~iv~~d~g~~~~~ 404 (571)
T PRK07710 331 ADAKQALQVLLQQEGKK-----ENHHEWLSLLKNWKEKYPLSYKRNSESIKPQKAIEMLYEITKG-EAIVTTDVGQHQMW 404 (571)
T ss_pred cCHHHHHHHHHHhhhcc-----CCcHHHHHHHHHHHHhChhhhcCCCCCcCHHHHHHHHHhhCCC-CeEEEECCcHHHHH
Confidence 99999999998766431 1235688777666554432211223569999999999999998 99999999999999
Q ss_pred HHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhh
Q 040733 465 AIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544 (643)
Q Consensus 465 ~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 544 (643)
..++++.++|++|++++++|+|||++|+|||++++.|+++||+++|||||+|++|||+|++||++|+++||+||++|+++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~eL~ta~r~~lpi~ivV~NN~~~~~i 484 (571)
T PRK07710 405 AAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKVVILNNEALGMV 484 (571)
T ss_pred HHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEEECchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCccccc
Q 040733 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMI 624 (643)
Q Consensus 545 ~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~ 624 (643)
++.|...|+.......+ ...+||.++|++||+++++|++.+||+++++++++.++|+||||.++++++..|++
T Consensus 485 ~~~~~~~~~~~~~~~~~-------~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~vd~~~~~~~~~ 557 (571)
T PRK07710 485 RQWQEEFYNQRYSHSLL-------SCQPDFVKLAEAYGIKGVRIDDELEAKEQLQHAIELQEPVVIDCRVLQSEKVMPMV 557 (571)
T ss_pred HHHHHHHhCCcceeccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCcccccccc
Confidence 99887766543322211 24589999999999999999999999999999999999999999999988877777
Q ss_pred CCCccc
Q 040733 625 PYDKSF 630 (643)
Q Consensus 625 ~~~~~~ 630 (643)
+.+..+
T Consensus 558 ~~~~~~ 563 (571)
T PRK07710 558 APGKGL 563 (571)
T ss_pred CCCCch
Confidence 665433
No 16
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=2.3e-103 Score=886.18 Aligned_cols=543 Identities=44% Similarity=0.767 Sum_probs=481.8
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.+++++|+|++.|+++||++|||+||+++++|+++|.+.+|++|.||||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 6 ~~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~ 85 (561)
T PRK06048 6 EKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGATNL 85 (561)
T ss_pred ccccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhhCCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHH
Confidence 35799999999999999999999999999999999977669999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++||.+++|||+|+|++++...+.+.+|++||..+++++|||++++.+++++++++++|++.|.++++|||||+||
T Consensus 86 ~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 86 VTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred HHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCC
Q 040733 228 VDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~ 305 (643)
.|++.+++..........+.+.+. ..++.+.+++++++|.+||||+|++|+|++ ++.+++++|||++|+||++|++
T Consensus 166 ~dv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~a~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~ 243 (561)
T PRK06048 166 KDVTTAEIDFDYPDKVELRGYKPT--YKGNPQQIKRAAELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTTTLM 243 (561)
T ss_pred hhhhhcccccccCcccccccCCCC--CCCCHHHHHHHHHHHHhCCCCEEEECCCcccccHHHHHHHHHHHhCCCEEEccc
Confidence 999987653211110011111111 125778999999999999999999999997 6789999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEec
Q 040733 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICA 385 (643)
Q Consensus 306 gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~ 385 (643)
|||+||++||+++|++|..+...++++++++|+||+||+++++..++.+..+.++.++||||+|+.+++++++.++.|++
T Consensus 244 ~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~ 323 (561)
T PRK06048 244 GIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDPAEISKNVKVDVPIVG 323 (561)
T ss_pred cCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEEe
Confidence 99999999999999999999999999999999999999999988887665566778999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHH
Q 040733 386 DAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWA 465 (643)
Q Consensus 386 D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~ 465 (643)
|++.+|++|++.+... ....|.+++...+.+++........++++..+++.|++.++ +.+++.|+|++..|.
T Consensus 324 D~~~~l~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~p--~~iiv~d~g~~~~~~ 395 (561)
T PRK06048 324 DAKQVLKSLIKYVQYC------DRKEWLDKINQWKKEYPLKYKEREDVIKPQYVIEQIYELCP--DAIIVTEVGQHQMWA 395 (561)
T ss_pred CHHHHHHHHHHhcccc------CcHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhCC--CcEEEEcCcHHHHHH
Confidence 9999999999876532 12468777666554443222222457999999999999988 578889999999999
Q ss_pred HHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 466 IQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 466 ~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
.++++.++|++|++++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++|||+|+++||+||++|++++
T Consensus 396 ~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~ 475 (561)
T PRK06048 396 AQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVAILNNGYLGMVR 475 (561)
T ss_pred HHhcccCCCCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccHHHHHHHHHcCCCeEEEEEECCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~ 625 (643)
+.|...|+.++....+ ...+||.++|++||+++++|++.+||+++|+++++.++|+||||++++++...|+.+
T Consensus 476 ~~~~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~~~~v~t~~el~~al~~a~~~~~p~liev~~~~~~~~~~~~~ 548 (561)
T PRK06048 476 QWQELFYDKRYSHTCI-------KGSVDFVKLAEAYGALGLRVEKPSEVRPAIEEAVASDRPVVIDFIVECEENVSPMVP 548 (561)
T ss_pred HHHHHHcCCcccccCC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCccccCCcCC
Confidence 8887766544322211 246899999999999999999999999999999999999999999999887777776
Q ss_pred CC
Q 040733 626 YD 627 (643)
Q Consensus 626 ~~ 627 (643)
.+
T Consensus 549 ~~ 550 (561)
T PRK06048 549 AG 550 (561)
T ss_pred CC
Confidence 54
No 17
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.2e-103 Score=886.67 Aligned_cols=549 Identities=43% Similarity=0.735 Sum_probs=485.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+++++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||||++|+||||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (563)
T PRK08527 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNA 81 (563)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHH
Confidence 47899999999999999999999999999999999765 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++|+.+++|||+|+|+.++...+++.+|++||..+++++|||++++.+++++++.|++|++.|+++++|||||+||
T Consensus 82 ~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 82 VTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCC
Q 040733 228 VDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~ 305 (643)
.|++.+++..........+.+. + ...++++.+++++++|.+||||+|++|+|+. ++.++|++|+|++++||++|++
T Consensus 162 ~Dv~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~~~~~~L~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~ 239 (563)
T PRK08527 162 KDVTATLGEFEYPKEISLKTYK-P-TYKGNSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVETLM 239 (563)
T ss_pred HhHhhhhhccccccccccccCC-C-CCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccc
Confidence 9998776431111111111111 1 1124778899999999999999999999997 5789999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEec
Q 040733 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICA 385 (643)
Q Consensus 306 gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~ 385 (643)
|||+||++||+++|++|..++...++++++||+||+||++++++.++.+..|.++.++||||+|+.+++++++.++.+++
T Consensus 240 ~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 319 (563)
T PRK08527 240 ARGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVG 319 (563)
T ss_pred cCCCCCCCChhhcCCCcccCCHHHHHHHHhCCEEEEeCCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEec
Confidence 99999999999999999999999999999999999999999988887776677778999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHH
Q 040733 386 DAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWA 465 (643)
Q Consensus 386 D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~ 465 (643)
|++.+|++|++.++... ......|.+++.+.+...+.......+++++.++++.|++.+++ |.|++.|+|++..|.
T Consensus 320 D~~~~l~~L~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-d~iv~~d~g~~~~~~ 395 (563)
T PRK08527 320 DLKNVLKEMLEELKEEN---PTTYKEWREILKRYNELHPLSYEDSDEVLKPQWVIERVGELLGD-DAIISTDVGQHQMWV 395 (563)
T ss_pred CHHHHHHHHHHhhhhcc---ccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHhhCCC-CeEEEECCcHHHHHH
Confidence 99999999998876431 11234688877666554332222223579999999999999999 999999999999999
Q ss_pred HHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 466 IQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 466 ~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
.++++.+.|++|++++++|+|||++|+|||++++.|+++||+|+|||||+|++|||+|++++|+|+++||+||++|++++
T Consensus 396 ~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN~~~~~i~ 475 (563)
T PRK08527 396 AQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVEYKIPVINIILNNNFLGMVR 475 (563)
T ss_pred HHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccHHHHHHHHHhCCCeEEEEEECCcchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~ 625 (643)
++|...|+.++....+ ...+||.++|++||+++++|++.+||+++|+++++.++|+||||++++.++..|+.+
T Consensus 476 ~~~~~~~~~~~~~~~~-------~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~v~~~~~~~~~~~ 548 (563)
T PRK08527 476 QWQTFFYEERYSETDL-------STQPDFVKLAESFGGIGFRVTTKEEFDKALKEALESDKVALIDVKIDRFENVLPMVP 548 (563)
T ss_pred HHHHhhcCCceeeccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEECCcccccccCC
Confidence 9887666543332211 235899999999999999999999999999999999999999999999888777777
Q ss_pred CCccc
Q 040733 626 YDKSF 630 (643)
Q Consensus 626 ~~~~~ 630 (643)
.+..+
T Consensus 549 ~~~~~ 553 (563)
T PRK08527 549 AGGAL 553 (563)
T ss_pred CCCCH
Confidence 65433
No 18
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=100.00 E-value=7.3e-103 Score=889.30 Aligned_cols=556 Identities=44% Similarity=0.713 Sum_probs=487.1
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
...++++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.||||++|+|||+||+|+||+|+||++|+|||++
T Consensus 28 ~~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 107 (612)
T PRK07789 28 PERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGAT 107 (612)
T ss_pred cccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 3457999999999999999999999999999999999766 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
|+++||++||.+++|||+|+|+.++...+++.+|++||..+++++|||++++.+++++++++++||+.|+++|+|||||+
T Consensus 108 N~l~gl~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~ 187 (612)
T PRK07789 108 NLVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVD 187 (612)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCCccccCCCcCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 226 IPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 226 iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
||.|++.+++...+.....++...+ ...++.+.+++++++|.+||||+||+|+|+. ++.+++++|+|++|+||++|
T Consensus 188 iP~Dv~~~~~~~~~~~~~~~~~~~~--~~~p~~~~i~~~~~~L~~AkrPlIl~G~g~~~~~a~~~l~~lae~l~~PV~tt 265 (612)
T PRK07789 188 IPKDALQAQTTFSWPPRMDLPGYRP--VTKPHGKQIREAAKLIAAARRPVLYVGGGVIRAEASAELRELAELTGIPVVTT 265 (612)
T ss_pred EccchhhcccccccCccccccCCCC--CCCCCHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHCCCEEEc
Confidence 9999998765321111111111111 1135778899999999999999999999997 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
++|||+||++||+++|.+|..++..++++++++|+||++|++++++.++.+..|.++.++||||+|+.+++++++.++.|
T Consensus 266 ~~~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~l~~~~t~~~~~~~~~~~~i~Id~d~~~i~~~~~~~~~i 345 (612)
T PRK07789 266 LMARGAFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGARFDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPI 345 (612)
T ss_pred ccccccCCCCChhhccCCcccCcHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCcEEEEECCHHHhCCCCCCCeEE
Confidence 99999999999999999999998888999999999999999999888776655677788999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCCcc-cCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChh
Q 040733 384 CADAKLVFNRMNMILESKGVGF-MFDFSAWREELHEQKKKYPFSY-KTFGEEIPPQYAIQILNELTDDEETIISTGVGQH 461 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~ 461 (643)
++|++.+|++|++.++...... ......|.+.+.+.+.+..... ...+.++++..+++.|++.+++ |.+++.|+|++
T Consensus 346 ~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-~~ivv~d~G~~ 424 (612)
T PRK07789 346 VGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGYDEPSDGSLAPQYVIERLGEIAGP-DAIYVAGVGQH 424 (612)
T ss_pred ecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhCccccccccCCCcCHHHHHHHHHhhCCC-CeEEEECCcHH
Confidence 9999999999998876432111 1234578887776655432211 1123569999999999999998 99999999999
Q ss_pred HHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCc
Q 040733 462 QMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYL 541 (643)
Q Consensus 462 ~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~ 541 (643)
..|+.+++++.++++|+.++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|++||++|+++||+||++|
T Consensus 425 ~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~ivV~NN~~~ 504 (612)
T PRK07789 425 QMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAIEGIPIKVALINNGNL 504 (612)
T ss_pred HHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcchhhhccHHHHHHHHHcCCCeEEEEEECCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC-CCcEEEEEEeCCCCCc
Q 040733 542 GMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET-PGPYLLDVMVSYQEHV 620 (643)
Q Consensus 542 g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~-~gp~lIeV~v~~~~~~ 620 (643)
|++++.|...|+.+.....+... ....+||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++++.
T Consensus 505 g~i~~~q~~~~~~~~~~~~~~~~---~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~~ 581 (612)
T PRK07789 505 GMVRQWQTLFYEERYSNTDLHTH---SHRIPDFVKLAEAYGCVGLRCEREEDVDAVIEKARAINDRPVVIDFVVGKDAMV 581 (612)
T ss_pred HHHHHHHHHhhCCCcceeecCcC---CCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEECCcccc
Confidence 99999987766654332222100 1134899999999999999999999999999999985 8999999999988877
Q ss_pred ccccCCCc
Q 040733 621 VPMIPYDK 628 (643)
Q Consensus 621 ~p~~~~~~ 628 (643)
.|+.+.+.
T Consensus 582 ~~~~~~~~ 589 (612)
T PRK07789 582 WPMVAAGT 589 (612)
T ss_pred CCccCCCC
Confidence 77776554
No 19
>PRK11269 glyoxylate carboligase; Provisional
Probab=100.00 E-value=1.1e-102 Score=885.00 Aligned_cols=546 Identities=31% Similarity=0.488 Sum_probs=473.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N 146 (643)
+|+++++|++.|+++||++|||+||+++++|+++|.+++ |++|.||||++|+|||+||||+| |+++||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N 82 (591)
T PRK11269 3 KMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (591)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHH
Confidence 479999999999999999999999999999999998764 99999999999999999999999 9999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++||.+++|||+|+||+++...+++.+|++||.++++++|||++++.++++++++|++||+.|+++|+|||||+|
T Consensus 83 ~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 162 (591)
T PRK11269 83 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDL 162 (591)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++.+++..........+. ..+.++++.+++++++|++||||+||+|+|+. ++.+++.+|+|++|+||++|+
T Consensus 163 P~Dv~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~PV~tt~ 238 (591)
T PRK11269 163 PFDVQVAEIEFDPDTYEPLPV----YKPAATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTL 238 (591)
T ss_pred Chhhhhccccccccccccccc----CCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccCHHHHHHHHHHHhCCCeEecc
Confidence 999988765311111001111 11235788899999999999999999999986 678999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCC-CcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 305 MGLGLFPCTDELCLRMVGMF-GTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~-~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
+|||+||++||+++|++|.. +...+++++++||+||+||++++++.++.+..+.++.++||||+|+.++++++++++.|
T Consensus 239 ~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~~~~~~~~~~i 318 (591)
T PRK11269 239 MGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQIGRVFGPDLGI 318 (591)
T ss_pred cccCcCCCCChhhccCCcCCCCcHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEeeCCHHHhCCCCCCCeEE
Confidence 99999999999999999875 56778889999999999999999888876665667778999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGVG-FMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++|++.+|++|++.+...... .......|.+++.+.+..+.......+.++++..+++.|++.+++ |.+|+.|+|++.
T Consensus 319 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-d~ivv~d~g~~~ 397 (591)
T PRK11269 319 VSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRTLLRKTHFDNVPIKPQRVYEEMNKAFGR-DTCYVSTIGLSQ 397 (591)
T ss_pred EeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhchhhccCCCCCcCHHHHHHHHHHhcCC-CcEEEECCcHHH
Confidence 999999999999877542111 012235788777665544321111223469999999999999999 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|..++++..+|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++||+||++||
T Consensus 398 ~~~~~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~~vV~NN~~~g 477 (591)
T PRK11269 398 IAAAQFLHVYKPRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNLPYIHVLVNNAYLG 477 (591)
T ss_pred HHHHHhcccCCCCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcCHHHHHHHHHhCCCeEEEEEeCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccC--CCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEEEEEeCC
Q 040733 543 MNVEYEDRYFEANRANSFLG--DPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLLDVMVSY 616 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g--~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lIeV~v~~ 616 (643)
|+++.|..++........+. .........+||+++|++||+++.+|++++||+++|+++++ .+||+||||++++
T Consensus 478 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 478 LIRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVFKPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred HHHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 99998865332211111110 00011224689999999999999999999999999999984 7899999999997
Q ss_pred CCC
Q 040733 617 QEH 619 (643)
Q Consensus 617 ~~~ 619 (643)
++.
T Consensus 558 ~~~ 560 (591)
T PRK11269 558 VTN 560 (591)
T ss_pred ccC
Confidence 663
No 20
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=100.00 E-value=2.5e-102 Score=880.47 Aligned_cols=552 Identities=44% Similarity=0.757 Sum_probs=482.9
Q ss_pred CCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhh---CC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 040733 65 APDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR---SN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSS 140 (643)
Q Consensus 65 ~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~---~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~ 140 (643)
.|.+.++++++|++.|+++||++|||+||+++++|+++|.+ .+ |++|.+|||++|+|||+||+|++|||+||++|+
T Consensus 5 ~~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~ 84 (585)
T CHL00099 5 LTLREKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATS 84 (585)
T ss_pred cccccccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 46677899999999999999999999999999999999964 34 999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCC
Q 040733 141 GPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPG 220 (643)
Q Consensus 141 GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~G 220 (643)
|||++|+++||++|+.+++|||+|+|+.++...+++.+|++|+..+++++|||++++.+++++++.+++||+.|.++|+|
T Consensus 85 GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~G 164 (585)
T CHL00099 85 GPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPG 164 (585)
T ss_pred CCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCCccccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcccchhhhccCCCCCCC----CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHH
Q 040733 221 PVLIDIPVDVQLELAVPNWNQP----CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVG 294 (643)
Q Consensus 221 PV~i~iP~Dv~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae 294 (643)
||||+||.|++.+++....... ...+.... ...++++.+++++++|++||||+||+|+|+. ++.+++++|+|
T Consensus 165 PV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae 242 (585)
T CHL00099 165 PVLIDIPKDVGLEKFDYYPPEPGNTIIKILGCRP--IYKPTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEITELAE 242 (585)
T ss_pred eEEEecChhhhhhhcccccccccccccccccCCC--CCCCCHHHHHHHHHHHHcCCCcEEEECCCCchhchHHHHHHHHH
Confidence 9999999999887763210000 00111110 1135788999999999999999999999996 67899999999
Q ss_pred HhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCccccc
Q 040733 295 LTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIG 374 (643)
Q Consensus 295 ~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~ 374 (643)
++|+||++|++|||+||++||+++|++|..+...+++++.+|||||++|++++++.++++..|.++.++||||+|+.+++
T Consensus 243 ~lg~PV~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~ 322 (585)
T CHL00099 243 LYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHIDIDPAEIG 322 (585)
T ss_pred HHCCCEEEccccCcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEECCCCcccccCCHhHcCCCCeEEEEECCHHHhC
Confidence 99999999999999999999999999998899889999999999999999999888766655667789999999999999
Q ss_pred CCCCCCeeEecCHHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeE
Q 040733 375 KVKLPDVSICADAKLVFNRMNMILESKGVG-FMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETI 453 (643)
Q Consensus 375 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~i 453 (643)
+++++++.|.+|++.+|++|++.+...... .......|.+++.+.++.+....+....++++.++++.|++.++ |.+
T Consensus 323 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~--d~i 400 (585)
T CHL00099 323 KNRIPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWRKEYPLLIPKPSTSLSPQEVINEISQLAP--DAY 400 (585)
T ss_pred CCCCCCeEEecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhChhhccccCCCcCHHHHHHHHHhhCC--CeE
Confidence 999999999999999999999887643210 01123568777766555432211122457999999999999988 688
Q ss_pred EEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEE
Q 040733 454 ISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKI 533 (643)
Q Consensus 454 v~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~i 533 (643)
++.|+|++..|..++++. ++++|+.++++|+|||++|+|||++++.|+++||+|+|||||+|++|||+|+++|++|+++
T Consensus 401 v~~d~G~~~~~~~~~~~~-~~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~~~~ 479 (585)
T CHL00099 401 FTTDVGQHQMWAAQFLKC-KPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQYNLPIKI 479 (585)
T ss_pred EEECCcHHHHHHHHhccC-CCCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhHHHHHHHHHhCCCeEE
Confidence 889999999999999986 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEE
Q 040733 534 LLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVM 613 (643)
Q Consensus 534 vV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~ 613 (643)
||+||++|+++++.|...|+.+.....+ ....+||.++|++||+++++|++.+||+++|+++++.+||+||||+
T Consensus 480 vV~NN~~y~~i~~~q~~~~~~~~~~~~~------~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~ 553 (585)
T CHL00099 480 IIINNKWQGMVRQWQQAFYGERYSHSNM------EEGAPDFVKLAEAYGIKGLRIKSRKDLKSSLKEALDYDGPVLIDCQ 553 (585)
T ss_pred EEEECCcchHHHHHHHHhcCCCcccccC------CCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999999999998767654432211 1235899999999999999999999999999999999999999999
Q ss_pred eCCCCCcccccCCC
Q 040733 614 VSYQEHVVPMIPYD 627 (643)
Q Consensus 614 v~~~~~~~p~~~~~ 627 (643)
++++++..|+.+.+
T Consensus 554 v~~~~~~~~~~~~~ 567 (585)
T CHL00099 554 VIEDENCYPMVAPG 567 (585)
T ss_pred ECCCcccCCCcCCC
Confidence 99888777766654
No 21
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=2.9e-102 Score=878.41 Aligned_cols=542 Identities=40% Similarity=0.685 Sum_probs=483.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+++++++|++.|+++||++|||+||+++++|+++|.++ +|++|.+|||++|+||||||||++|+|+||++|+|||++|+
T Consensus 12 ~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~ 91 (564)
T PRK08155 12 RFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNL 91 (564)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHH
Confidence 36899999999999999999999999999999999876 49999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++|+.+++|||+|+|+.++...+++.+|++|+.++++++|||++++.++++++..+++|++.|.++|+|||||+||
T Consensus 92 l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 92 VTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred HHHHHHHHhcCCCEEEEeccCCcccccCCCccccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCC
Q 040733 228 VDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~ 305 (643)
.|++.+++.... .+ .+... ..+..++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|++
T Consensus 172 ~Dv~~~~~~~~~-~~--~~~~~-~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~ 247 (564)
T PRK08155 172 KDVQTAVIELEA-LP--APAEK-DAAPAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPARARELAEKAQLPTTMTLM 247 (564)
T ss_pred HhHHhhhccccc-CC--Ccccc-CCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccc
Confidence 999987763210 00 01100 111235777899999999999999999999997 5789999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEec
Q 040733 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICA 385 (643)
Q Consensus 306 gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~ 385 (643)
|||+||++||+++|.+|..+...++++++++|+||++|++++++.++++..|.++.++||||+|+.+++++++.++.|++
T Consensus 248 ~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~ 327 (564)
T PRK08155 248 ALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQA 327 (564)
T ss_pred ccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCCHhhcCCCCeEEEEECCHHHhCCCcCCCeEEec
Confidence 99999999999999999888888899999999999999999988776665567778999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHH
Q 040733 386 DAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWA 465 (643)
Q Consensus 386 D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~ 465 (643)
|++.+|++|++.+... ....|.+++...+++++...+....++++..+++.|++.+++ |.+|+.|+|++..|.
T Consensus 328 D~~~~l~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~-~~iv~~D~G~~~~~~ 400 (564)
T PRK08155 328 DVDDVLAQLLPLVEAQ------PRAEWHQLVADLQREFPCPIPKADDPLSHYGLINAVAACVDD-NAIITTDVGQHQMWT 400 (564)
T ss_pred CHHHHHHHHHHhhccc------chHHHHHHHHHHHHhChhhcccCCCCcCHHHHHHHHHHhCCC-CeEEEECCchHHHHH
Confidence 9999999998776431 234688777666555432212223479999999999999999 999999999999999
Q ss_pred HHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 466 IQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 466 ~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
.+++++++|++|+.++++|+|||++|+|+|++++.|+++||+++|||||+|++|||+|++++++|+++||+||++||+++
T Consensus 401 ~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~eL~ta~~~~lpvi~vV~NN~~~g~~~ 480 (564)
T PRK08155 401 AQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAENQLDVKIILMNNEALGLVH 480 (564)
T ss_pred HHhccccCCCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCcccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~ 625 (643)
+.|...|+.+.....+ ...+||.++|++||+++++|++++||+++|+++++.++|+||||.++++++..|+.+
T Consensus 481 ~~q~~~~~~~~~~~~~-------~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~~~~~~~~~~~~~ 553 (564)
T PRK08155 481 QQQSLFYGQRVFAATY-------PGKINFMQIAAGFGLETCDLNNEADPQAALQEAINRPGPALIHVRIDAEEKVYPMVP 553 (564)
T ss_pred HHHHHhcCCCeeeccC-------CCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCcccCCcCC
Confidence 9887766654332211 245899999999999999999999999999999999999999999999888777776
Q ss_pred CCc
Q 040733 626 YDK 628 (643)
Q Consensus 626 ~~~ 628 (643)
.+.
T Consensus 554 ~~~ 556 (564)
T PRK08155 554 PGA 556 (564)
T ss_pred CCC
Confidence 654
No 22
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=100.00 E-value=1.2e-101 Score=875.33 Aligned_cols=535 Identities=26% Similarity=0.395 Sum_probs=469.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
+|+++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||+|+||+|+||++|+|||++|++
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~ 80 (579)
T TIGR03457 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCV 80 (579)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHH
Confidence 47999999999999999999999999999999999876799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+||++||.+++|||+|+|+.++...+++.+|++|+..+++++|||++++.+++++++.+++||+.|.+++ |||||+||.
T Consensus 81 ~gla~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~-GPV~l~iP~ 159 (579)
T TIGR03457 81 TAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREM-GPAQLNIPR 159 (579)
T ss_pred HHHHHHhhcCCCEEEEeCCCccccCCCCCCcccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCC-CCEEEEeCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCC
Q 040733 229 DVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 229 Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|++.+++......+ .+ + ....++++.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||++|++|
T Consensus 160 Dv~~~~~~~~~~~~--~~-~---~~~~~~~~~i~~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~g 233 (579)
T TIGR03457 160 DYFYGEIDVEIPRP--VR-L---DRGAGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLH 233 (579)
T ss_pred chhhhhcccccCcc--cc-c---CCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHhCCCEEEcccc
Confidence 99987764211110 01 1 11235778899999999999999999999997 67899999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccC---ccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTS---KLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~---~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
||+||++||+++|++|..++..+++++++||+||+||++++++.+. ....+..++++||||+|+.++++++..++.|
T Consensus 234 kg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i 313 (579)
T TIGR03457 234 NDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVGI 313 (579)
T ss_pred cccCCCCCchhccCCcCcchHHHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCCeeE
Confidence 9999999999999999999888999999999999999999876542 1123455789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCC---------CCChhHHHHHHHHHHHhCCC-c-------ccCCCCCCCHHHHHHHHHhc
Q 040733 384 CADAKLVFNRMNMILESKGVGF---------MFDFSAWREELHEQKKKYPF-S-------YKTFGEEIPPQYAIQILNEL 446 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~---------~~~~~~w~~~~~~~~~~~~~-~-------~~~~~~~i~~~~~~~~L~~~ 446 (643)
++|++.+|++|++.+....... ...+..|.+++.+.+..... . ......++++.++++.|++.
T Consensus 314 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 393 (579)
T TIGR03457 314 CGDAKAAAAEILQRLAGKAGDANRAERKAKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHPRQVLRELEKA 393 (579)
T ss_pred ecCHHHHHHHHHHhhhhcccccchhhhhhhhhhhHHHHHHHHHHHHhhccccccccccccccCCCCCcCHHHHHHHHHHh
Confidence 9999999999998886421000 01234566655544322110 0 01123469999999999999
Q ss_pred CCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHH
Q 040733 447 TDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKA 526 (643)
Q Consensus 447 l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~ 526 (643)
+++ |.|++.|+|++..|..++++.++|++|++++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|++|
T Consensus 394 l~~-~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Tavr 472 (579)
T TIGR03457 394 MPE-DAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSMNEIMTAVR 472 (579)
T ss_pred CCC-CeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh---
Q 040733 527 ENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE--- 603 (643)
Q Consensus 527 ~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~--- 603 (643)
|++|+++||+||++||++++.|...|+.++....+ ...+||.++|++||+++++|++++||+++|+++++
T Consensus 473 ~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~g~~v~~~~el~~al~~a~~~~~ 545 (579)
T TIGR03457 473 HDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTEL-------ESELSFAGIADAMGAKGVVVDKPEDVGPALKKAIAAQA 545 (579)
T ss_pred hCCCeEEEEEECcchHHHHHHHHHhhCCcceeccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999988777654333221 12369999999999999999999999999999987
Q ss_pred CCCcEEEEEEeCCCC
Q 040733 604 TPGPYLLDVMVSYQE 618 (643)
Q Consensus 604 ~~gp~lIeV~v~~~~ 618 (643)
.++|+||||++++++
T Consensus 546 ~~~p~lieV~v~~~~ 560 (579)
T TIGR03457 546 EGKTTVIEIVCTREL 560 (579)
T ss_pred CCCcEEEEEEeCCCc
Confidence 589999999999876
No 23
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.4e-101 Score=873.21 Aligned_cols=551 Identities=38% Similarity=0.672 Sum_probs=482.2
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
++++++|++.|+++||++|||+||+++++|+++|.++ +|++|.+|||++|+|||+||+|++|+|+||++|+|||++|++
T Consensus 4 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l 83 (574)
T PRK06882 4 LSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAI 83 (574)
T ss_pred ccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHH
Confidence 6899999999999999999999999999999999875 599999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+||++|+.+++|||+|+|++++...+++.+|++|+..+++++|||++++.+++++++.+++|++.|.++++|||||+||.
T Consensus 84 ~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06882 84 TGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPK 163 (574)
T ss_pred HHHHHHhhcCCCEEEEecCCCccccCCCcccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 229 DVQLELAVPNW--NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 229 Dv~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|++.+.+.... ........+.+. ..++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|+
T Consensus 164 Dv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~ 241 (574)
T PRK06882 164 DMVNPANKFTYEYPEEVSLRSYNPT--VQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSL 241 (574)
T ss_pred HHhhhhcccccccCcccccccCCCC--CCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEcC
Confidence 99876542110 000011111111 124678899999999999999999999997 567899999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+|||+||++||+++|++|..++..+++++++||+||+||++++++.++.+..+.+++++||||.|+.+++++++.++.|+
T Consensus 242 ~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~ 321 (574)
T PRK06882 242 MGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDPTSISKNVPAYIPIV 321 (574)
T ss_pred ccCcCCCCCChhhcCCCcccccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhcCccCCceEEe
Confidence 99999999999999999998999999999999999999999998888776666677899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCC-CCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHH
Q 040733 385 ADAKLVFNRMNMILESKGV-GFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQM 463 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~ 463 (643)
+|++.+|++|.+.+..... ........|.+++.+.+.+..........++++..+++.|++.+++ +.+++.|+|++..
T Consensus 322 ~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-~~ii~~d~g~~~~ 400 (574)
T PRK06882 322 GSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKKCLEFDRTSDVIKPQQVVEAIYRLTNG-DAYVASDVGQHQM 400 (574)
T ss_pred cCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhChhhhccCCCCcCHHHHHHHHHhhcCC-CeEEEecCchhHH
Confidence 9999999999988754211 0012235687777665544322111123469999999999999998 9999999999999
Q ss_pred HHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchh
Q 040733 464 WAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543 (643)
Q Consensus 464 ~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~ 543 (643)
|..++++...|++|+.++++|+|||++|+|||++++.|+++||+|+|||||+|++|||+|+++|++|+++||+||++|++
T Consensus 401 ~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lpv~~vV~NN~~~~~ 480 (574)
T PRK06882 401 FAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPVVIVSLNNRFLGM 480 (574)
T ss_pred HHHHhccccCCCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEECchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC-CCcEEEEEEeCCCCCccc
Q 040733 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET-PGPYLLDVMVSYQEHVVP 622 (643)
Q Consensus 544 ~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~-~gp~lIeV~v~~~~~~~p 622 (643)
++++|...|+.+.....+ ...+||.++|++||+++++|++.+||+++|+++++. ++|+||||+++++++..|
T Consensus 481 i~~~q~~~~~~~~~~~~~-------~~~~d~~~la~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~liev~i~~~~~~~~ 553 (574)
T PRK06882 481 VKQWQDLIYSGRHSQVYM-------NSLPDFAKLAEAYGHVGIQIDTPDELEEKLTQAFSIKDKLVFVDVNVDETEHVYP 553 (574)
T ss_pred HHHHHHHhcCCcccccCC-------CCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhcCCCcEEEEEEecCccccCC
Confidence 999987666543222211 134799999999999999999999999999999985 899999999999888878
Q ss_pred ccCCCccc
Q 040733 623 MIPYDKSF 630 (643)
Q Consensus 623 ~~~~~~~~ 630 (643)
+.+.+..+
T Consensus 554 ~~~~~~~~ 561 (574)
T PRK06882 554 MQIRGGAM 561 (574)
T ss_pred ccCCCCch
Confidence 77765433
No 24
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=100.00 E-value=2.6e-101 Score=874.17 Aligned_cols=532 Identities=24% Similarity=0.325 Sum_probs=464.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC--CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS--NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
+++++|+|++.|+++||+||||+||+++++|+++|.+. +|++|.+|||++|+||||||||+||+||||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 81 (597)
T PRK08273 2 SQTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIH 81 (597)
T ss_pred CccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 47899999999999999999999999999999999764 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccc-eeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT-KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~t-k~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
+++||++||.|++|||+|+|++++...+++.+|++|+.++|+++| ||++++.+++++++.+++|++.|++++ |||||+
T Consensus 82 ~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~-gPV~i~ 160 (597)
T PRK08273 82 LLNGLYDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAER-TVTAVI 160 (597)
T ss_pred HHHHHHHHHhcCCCEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCC-CCEEEE
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999976 999999
Q ss_pred cccchhhhccCCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceee
Q 040733 226 IPVDVQLELAVPNWNQP---CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 226 iP~Dv~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~t 302 (643)
||.|++.+++....... ...+.+. .....++++.+++++++|.+||||+|++|+|+.++.+++.+|||++|+||++
T Consensus 161 iP~Dv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~a~~~L~~AkrPvi~~G~g~~~a~~~l~~lae~~~~PV~t 239 (597)
T PRK08273 161 LPNDVQELEYEPPPHAHGTVHSGVGYT-RPRVVPYDEDLRRAAEVLNAGRKVAILVGAGALGATDEVIAVAERLGAGVAK 239 (597)
T ss_pred eCcchhhCcccCccccccccccccCCC-CCCCCCCHHHHHHHHHHHhcCCCEEEEECcchHhHHHHHHHHHHHhCCceee
Confidence 99999987653210000 0001111 1112367889999999999999999999999998899999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCee
Q 040733 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVS 382 (643)
Q Consensus 303 t~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~ 382 (643)
|++|||+||++||+++|++|..|+..+++++++|||||+||++++.... ....+++++||||+|+.+++++++.++.
T Consensus 240 t~~gkg~~~e~hp~~~G~~G~~g~~~a~~~~~~aDlvl~lG~~~~~~~~---~~~~~~~~~i~Id~d~~~~~~~~~~~~~ 316 (597)
T PRK08273 240 ALLGKAALPDDLPWVTGSIGLLGTKPSYELMRECDTLLMVGSSFPYSEF---LPKEGQARGVQIDIDGRMLGLRYPMEVN 316 (597)
T ss_pred cccCcccCCCCCccceecCCCCccHHHHHHHHhCCEEEEeCCCCCHHhc---CCCCCCCeEEEEeCCHHHcCCCCCCCce
Confidence 9999999999999999999999999999999999999999999853211 1112356899999999999999999999
Q ss_pred EecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc----ccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCC
Q 040733 383 ICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFS----YKTFGEEIPPQYAIQILNELTDDEETIISTGV 458 (643)
Q Consensus 383 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~ 458 (643)
|++|++.+|++|++.+.... ...|.+.+.+.+.++... ......+++|..+++.|++.+++ |.||+.|+
T Consensus 317 i~~D~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~-~~ivv~d~ 389 (597)
T PRK08273 317 LVGDAAETLRALLPLLERKK------DRSWRERIEKWVARWWETLEARAMVPADPVNPQRVFWELSPRLPD-NAILTADS 389 (597)
T ss_pred EecCHHHHHHHHHHhhhccC------CHHHHHHHHHHHHHhHhhhhhhhcCCCCCcCHHHHHHHHHhhCCC-CeEEEECC
Confidence 99999999999998776421 135766655544433211 01123569999999999999998 99999999
Q ss_pred ChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHHHHh-----CCCeE
Q 040733 459 GQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKAE-----NIPVK 532 (643)
Q Consensus 459 G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta~~~-----~lpv~ 532 (643)
|++..|..++++.+++.+|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|+ +|||+|++|| ++|++
T Consensus 390 G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~~~~lpvi 469 (597)
T PRK08273 390 GSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQWSDPRLI 469 (597)
T ss_pred cHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHHHhhcccCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999 6999999999 89999
Q ss_pred EEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEE
Q 040733 533 ILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDV 612 (643)
Q Consensus 533 ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV 612 (643)
+||+||++|+++++.|...++.+..... .....+||.++|++||+++++|++.+||+++|+++++.++|+||||
T Consensus 470 ivV~NN~~~~~i~~~q~~~~~~~~~~~~------~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV 543 (597)
T PRK08273 470 VLVLNNRDLNQVTWEQRVMEGDPKFEAS------QDLPDVPYARFAELLGLKGIRVDDPEQLGAAWDEALAADRPVVLEV 543 (597)
T ss_pred EEEEeCCcchHHHHHHHHhcCCCccccc------ccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999999999999888655543211111 1235689999999999999999999999999999999999999999
Q ss_pred EeCCCC
Q 040733 613 MVSYQE 618 (643)
Q Consensus 613 ~v~~~~ 618 (643)
.+++++
T Consensus 544 ~~~~~~ 549 (597)
T PRK08273 544 KTDPNV 549 (597)
T ss_pred EeCCCC
Confidence 999876
No 25
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=100.00 E-value=6.4e-101 Score=866.96 Aligned_cols=547 Identities=47% Similarity=0.771 Sum_probs=484.5
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
|+++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.||||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l 80 (558)
T TIGR00118 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV 80 (558)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 5799999999999999999999999999999999864 499999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+||++|+.+++|||+|+|++++...+++.+|++||..+++++|||++++.+++++++++++|++.|.++++|||||+||.
T Consensus 81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~ 160 (558)
T TIGR00118 81 TGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPK 160 (558)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCCCCcccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCC
Q 040733 229 DVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 229 Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|++.+++..........+.+.+. ..+.+..+++++++|.+||||+|++|+|+. ++.++|.+|+|++|+||++|++|
T Consensus 161 dv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~~~ 238 (558)
T TIGR00118 161 DVTTAEIEYPYPEKVNLPGYRPT--VKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTLMG 238 (558)
T ss_pred hhhhhhccccccccccccCCCCC--CCCCHHHHHHHHHHHHhCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEcccc
Confidence 99987763211100111111110 124677899999999999999999999997 67899999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
||++|++||+++|++|..+...++++++++|+||+||++++++.++++..+.++.++||||.|+.++++++..++.|.+|
T Consensus 239 kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d 318 (558)
T TIGR00118 239 LGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHIDIDPAEIGKNVRVDIPIVGD 318 (558)
T ss_pred CCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCcEEEEeCCHHHhCCcCCCCeEEecC
Confidence 99999999999999999899999999999999999999999888877666777789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHH
Q 040733 387 AKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAI 466 (643)
Q Consensus 387 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~ 466 (643)
++.+|++|++.+..... .....|.++++..+.+..........++++..+++.|++.+++ +.||+.|+|++..|..
T Consensus 319 ~~~~l~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~iv~~d~g~~~~~~~ 394 (558)
T TIGR00118 319 ARNVLEELLKKLFELKE---RKESAWLEQINKWKKEYPLKMDYTEEGIKPQQVIEELSRVTKD-EAIVTTDVGQHQMWAA 394 (558)
T ss_pred HHHHHHHHHHhhhhccc---cCcHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhCCC-CeEEEeCCcHHHHHHH
Confidence 99999999987753210 1234688777666554332111223569999999999999999 9999999999999999
Q ss_pred HhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 467 QFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 467 ~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
+++..++|++|++++++|+|||++|+|||++++.|+++||+++|||||+|++|||+|++++++|+++||+||++|++++.
T Consensus 395 ~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~eL~ta~~~~l~~~~vv~NN~~~~~~~~ 474 (558)
T TIGR00118 395 QFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDIPVKILILNNRYLGMVRQ 474 (558)
T ss_pred HhcccCCCCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEeCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPY 626 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~ 626 (643)
.|...|..+.....+ ...+||.++|++||+++++|++.+||+++|+++++.++|+||||++++++...|++++
T Consensus 475 ~q~~~~~~~~~~~~~-------~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~~~~~~~~~~~~~~ 547 (558)
T TIGR00118 475 WQELFYEERYSHTHM-------GSLPDFVKLAEAYGIKGIRIEKPEELDEKLKEALSSNEPVLLDVVVDKPENVLPMVAP 547 (558)
T ss_pred HHHHhcCCceeeccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEeCCccccccccCC
Confidence 887766654332211 2358999999999999999999999999999999999999999999998888888876
Q ss_pred Ccc
Q 040733 627 DKS 629 (643)
Q Consensus 627 ~~~ 629 (643)
+..
T Consensus 548 ~~~ 550 (558)
T TIGR00118 548 GGG 550 (558)
T ss_pred CCc
Confidence 643
No 26
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=100.00 E-value=5.8e-101 Score=863.83 Aligned_cols=531 Identities=28% Similarity=0.427 Sum_probs=465.9
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHH
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGL 151 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl 151 (643)
|+++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||||+||||+||++|+|||++|+++||
T Consensus 1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl 80 (539)
T TIGR02418 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL 80 (539)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH
Confidence 57999999999999999999999999999999776699999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchh
Q 040733 152 MDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231 (643)
Q Consensus 152 ~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~ 231 (643)
++|+.+++|||+|+|+.++...+++.+|++||..+++++|||++++.+++++++.+++||+.|.++++|||||+||.|++
T Consensus 81 ~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~ 160 (539)
T TIGR02418 81 ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVV 160 (539)
T ss_pred HHHhhcCCCEEEEeCCCcccccccCcccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHh
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCC
Q 040733 232 LELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGL 309 (643)
Q Consensus 232 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~ 309 (643)
.+++...... +..... ...++++.+++++++|.+||||+|++|.|+. ++.+++++|+|++|+||++|++|||.
T Consensus 161 ~~~~~~~~~~----~~~~~~-~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~ 235 (539)
T TIGR02418 161 DSPVSVKAIP----ASYAPK-LGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQGAGA 235 (539)
T ss_pred hCcccccccC----cccCCC-CCCCCHHHHHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCEEEccccCcC
Confidence 8876421100 011111 1224667899999999999999999999996 57899999999999999999999999
Q ss_pred CCCCC-CCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHH
Q 040733 310 FPCTD-ELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAK 388 (643)
Q Consensus 310 ~~~~h-pl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~ 388 (643)
||++| |+++|++|..++..+++++++||+||++|+++.++.+..|. +..+.++||||.|+.+++++++.++.|++|++
T Consensus 236 i~~~~~~~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~ 314 (539)
T TIGR02418 236 VSRELEDHFFGRVGLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWN-SENDATIVHIDVEPAQIDNNYQPDLELVGDIA 314 (539)
T ss_pred CCCCCChhhcccCcCCCcHHHHHHHHhCCEEEEecCcccccCccccC-cCCCCeEEEEeCChHHcCCccCCCeEEecCHH
Confidence 99997 78999999989888899999999999999999877665443 22357899999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc-ccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHH
Q 040733 389 LVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFS-YKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQ 467 (643)
Q Consensus 389 ~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~ 467 (643)
.+|++|++.++.... .....+|.+++.+.++++... ......++++.++++.|++.+++ +.+|+.|+|++..|..+
T Consensus 315 ~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-~~ii~~d~G~~~~~~~~ 391 (539)
T TIGR02418 315 STLDLLAERIPGYEL--PPDALAILEDLKQQREALDRVPATLKQAHLHPLEIIKAMQAIVTD-DVTVTVDMGSHYIWMAR 391 (539)
T ss_pred HHHHHHHHhhccccC--ccchHHHHHHHHHHHHHhhhccccCCCCCcCHHHHHHHHHhhCCC-CCEEEECCcHHHHHHHH
Confidence 999999987764321 112335665555444332111 01122469999999999999999 99999999999999999
Q ss_pred hccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHH
Q 040733 468 FYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEY 547 (643)
Q Consensus 468 ~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~ 547 (643)
++....|++++.+.++|+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++||++|+++||+||++|+++++.
T Consensus 392 ~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~ 471 (539)
T TIGR02418 392 YFRSYRARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVRLKLNIVHIIWNDNGYNMVEFQ 471 (539)
T ss_pred hcccCCCCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhchHHHHHHHHHhCCCeEEEEEECCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 548 EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 548 q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
|...|+ +.... ....+||.++|++||+++.+|++++||+++|+++++.++|.||||+++++++.
T Consensus 472 ~~~~~~-~~~~~--------~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~p~lIev~v~~~~~~ 535 (539)
T TIGR02418 472 EEMKYQ-RSSGV--------DFGPIDFVKYAESFGAKGLRVESPDQLEPTLRQAMEVEGPVVVDIPVDYSDNP 535 (539)
T ss_pred HHHhcC-Ccccc--------cCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCcccc
Confidence 776554 22222 12468999999999999999999999999999999999999999999987653
No 27
>PRK08617 acetolactate synthase; Reviewed
Probab=100.00 E-value=4.5e-101 Score=867.12 Aligned_cols=535 Identities=28% Similarity=0.420 Sum_probs=468.1
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
+.+++++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 2 ~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N 81 (552)
T PRK08617 2 DKKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSN 81 (552)
T ss_pred CccccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhCCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhH
Confidence 34689999999999999999999999999999999998766999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.+++|||+|+|++++...+++.+|++||.++++++|||++++.+++++++.+++||+.|.++++|||||+|
T Consensus 82 ~l~gl~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~i 161 (552)
T PRK08617 82 LATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSL 161 (552)
T ss_pred hHHHHHHHhhcCCCEEEEecCCcccccCCCCccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++.+++.... .. +..... ...++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|+
T Consensus 162 P~dv~~~~~~~~~--~~--~~~~~~-~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~ 236 (552)
T PRK08617 162 PQDVVDAPVTSKA--IA--PLSKPK-LGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVETF 236 (552)
T ss_pred hhhhhhccccccc--cc--cccCCC-CCCCCHHHHHHHHHHHHhCCCCEEEECCCcchhhHHHHHHHHHHHhCCCEEecc
Confidence 9999987763211 00 101111 1224677899999999999999999999986 577999999999999999999
Q ss_pred CCCCCCCCCCC-CcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 305 MGLGLFPCTDE-LCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 305 ~gkg~~~~~hp-l~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
+|||.||++|| +++|++|..+...++++++++|+||+||+++.++.+..|.. ..++++||||+|+.++++++++++.|
T Consensus 237 ~gkg~~~~~hp~~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i 315 (552)
T PRK08617 237 QAAGVISRELEDHFFGRVGLFRNQPGDELLKKADLVITIGYDPIEYEPRNWNS-EGDATIIHIDVLPAEIDNYYQPEREL 315 (552)
T ss_pred ccCccCCCCCchhhccCCcCCCcHHHHHHHHhCCEEEEecCcccccccccccc-CCCCcEEEEeCChHHhCCccCCCeEE
Confidence 99999999998 69999998888888999999999999999987665543332 23578999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc-cCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY-KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
.+|++.+|++|++.++.... ......|.+.+.+.++...... .....++++..+++.|++.+++ |.+|+.|+|++.
T Consensus 316 ~~D~~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-~~ii~~d~G~~~ 392 (552)
T PRK08617 316 IGDIAATLDLLAEKLDGLSL--SPQSLEILEELRAQLEELAERPARLEEGAVHPLRIIRALQDIVTD-DTTVTVDVGSHY 392 (552)
T ss_pred eCCHHHHHHHHHHhhhcccC--ccchHHHHHHHHHHHHHhhhhhcccCCCCcCHHHHHHHHHHhcCC-CcEEEeCCcHHH
Confidence 99999999999887764211 1123456665554433221111 1223569999999999999999 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|..+++....|++++.++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|+++||+|+++||+||++|+
T Consensus 393 ~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~vV~NN~~~~ 472 (552)
T PRK08617 393 IWMARYFRSYEPRHLLFSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVRLKLNIVHIIWNDGHYN 472 (552)
T ss_pred HHHHHhccccCCCeEEecCccccccccccHHHhhHhhcCCCcEEEEEechHHhhhHHHHHHHHHhCCCeEEEEEECCccc
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
++++.|...|. +..+. ....+||.++|++||+++++|++++||+++|+++++.++|+||||++++++.
T Consensus 473 ~~~~~~~~~~~-~~~~~--------~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~liev~~~~~~~ 540 (552)
T PRK08617 473 MVEFQEEMKYG-RSSGV--------DFGPVDFVKYAESFGAKGLRVTSPDELEPVLREALATDGPVVIDIPVDYSDN 540 (552)
T ss_pred hHHHHHHhhcC-CcccC--------CCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCcEEEEEEeccccc
Confidence 99988766552 22222 1246899999999999999999999999999999999999999999998764
No 28
>PRK08322 acetolactate synthase; Reviewed
Probab=100.00 E-value=8.5e-101 Score=864.97 Aligned_cols=529 Identities=30% Similarity=0.463 Sum_probs=463.1
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
|+++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||||+||||+||++|+|||++|+++
T Consensus 1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~ 80 (547)
T PRK08322 1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVT 80 (547)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHH
Confidence 68999999999999999999999999999999997656999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
||++||.+++|||+|+|+++....+++.+|++||.++++++|||++++.+++++++.+++||+.|.++|+|||||+||.|
T Consensus 81 ~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 81 GVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHHHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCC
Q 040733 230 VQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGL 307 (643)
Q Consensus 230 v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gk 307 (643)
++.+++... + ++... .....++.+.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||++|++||
T Consensus 161 v~~~~~~~~---~--~~~~~-~~~~~~~~~~i~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gk 234 (547)
T PRK08322 161 IAAEETDGK---P--LPRSY-SRRPYASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMGK 234 (547)
T ss_pred hhhCccccc---c--ccccC-CCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEccccC
Confidence 987654311 1 11111 111235788899999999999999999999996 578999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCH
Q 040733 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADA 387 (643)
Q Consensus 308 g~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~ 387 (643)
|.||++||+++|++|..+...++++++++|+||+||+++.++.+..+. +.++.++||||+|+.++++++..++.+++|+
T Consensus 235 g~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlil~lG~~l~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~ 313 (547)
T PRK08322 235 GVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMN-PNGDKKVIHINFLPAEVDPVYFPQVEVVGDI 313 (547)
T ss_pred CcCCCCCchhccCCCCCCCHHHHHHHHhCCEEEEECCCCccccccccC-CCCCCeEEEEeCCHHHcCCCcCCCeEEecCH
Confidence 999999999999999888888999999999999999999877654433 2346789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc-cCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHH
Q 040733 388 KLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY-KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAI 466 (643)
Q Consensus 388 ~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~ 466 (643)
+.+|++|.+.++... .....|..++++...+..... .....++++.++++.|++.+++ +.+++.|+|++..|..
T Consensus 314 ~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-~~ii~~d~G~~~~~~~ 388 (547)
T PRK08322 314 ANSLWQLKERLADQP----HWDFPRFLKIREAIEAHLEEGADDDRFPMKPQRIVADLRKVMPD-DDIVILDNGAYKIWFA 388 (547)
T ss_pred HHHHHHHHHhccccc----cccHHHHHHHHHHHHHhhhhcccCCCCCcCHHHHHHHHHHHCCC-CeEEEECCcHHHHHHH
Confidence 999999988765321 111234333322211111010 1122369999999999999999 9999999999999999
Q ss_pred HhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 467 QFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 467 ~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
++++..+|++|+.++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|+++|++|+++||+||++|||+++
T Consensus 389 ~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~ 468 (547)
T PRK08322 389 RNYRAYEPNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVLILNDNAYGMIRW 468 (547)
T ss_pred HhcccCCCCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhccHHHHHHHHHhCCCeEEEEEeCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
.|...|... ... ....+||+++|++||+++++|++.+||+++|+++++.++|+||||++++++.
T Consensus 469 ~~~~~~~~~-~~~--------~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~v~~~~~ 532 (547)
T PRK08322 469 KQENMGFED-FGL--------DFGNPDFVKYAESYGAKGYRVESADDLLPTLEEALAQPGVHVIDCPVDYSEN 532 (547)
T ss_pred HHHhhcCCc-ccc--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCccC
Confidence 886654322 111 1245899999999999999999999999999999999999999999987654
No 29
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2.3e-100 Score=865.40 Aligned_cols=546 Identities=43% Similarity=0.708 Sum_probs=479.9
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
|+++|+|++.|+++||++|||+||+++++|+++|.+.+|++|.||||++|+|||+||+|++|+||||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~ 80 (586)
T PRK06276 1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLVT 80 (586)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHH
Confidence 58999999999999999999999999999999998767999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
||++|+.+++|||+|+|+.++...+.+.+|++||.++++++|||++++.+++++++.+++|++.|.++++|||||+||.|
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 81 GIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred HHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCC-CCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 230 VQLELAVPNW-NQPCK--LPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 230 v~~~~~~~~~-~~~~~--~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
++.+++.... ..+.. .+.+.+ ...++.+.+++++++|.+||||+|++|.|+. ++.+++.+|+|++|+||++|+
T Consensus 161 v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~ 238 (586)
T PRK06276 161 VQEGELDLEKYPIPAKIDLPGYKP--TTFGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTL 238 (586)
T ss_pred HHhhhhccccccccccccccCCCC--CCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcC
Confidence 9987764210 00000 011110 1124678899999999999999999999996 678999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+|||+||++||+++|.+|..+...++++++++|+||+||+++++..++.+..|.++.++||||.|+.++++++..++.|.
T Consensus 239 ~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~ 318 (586)
T PRK06276 239 MGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAEIGKNVRVDVPIV 318 (586)
T ss_pred CCCccCCCCCcccccCCCCCCCHHHHHHHHcCCEEEEECCCCCccccCCccccCCCCeEEEEECCHHHhCCcCCCceEEe
Confidence 99999999999999999998998999999999999999999998888766667777899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCC----CeEEEeCCCh
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDE----ETIISTGVGQ 460 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~----d~iv~~d~G~ 460 (643)
+|++.+|++|++.+..... .....|.+++.+.+.++.........++++..+++.|++.+++. |.||+.|+|+
T Consensus 319 ~D~~~~L~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~ 395 (586)
T PRK06276 319 GDAKNVLRDLLAELMKKEI---KNKSEWLERVKKLKKESIPRMDFDDKPIKPQRVIKELMEVLREIDPSKNTIITTDVGQ 395 (586)
T ss_pred cCHHHHHHHHHHhhhhhcc---cchHHHHHHHHHHHHhccccccCCCCCcCHHHHHHHHHHhccccCCCCCeEEEeCCcH
Confidence 9999999999987754211 12356888776655543221111235699999999999999862 6889999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+..|..++++.++|++|++++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|++|+++|+++||+||++
T Consensus 396 ~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~vV~NN~~ 475 (586)
T PRK06276 396 NQMWMAHFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAEYDIPVVICIFDNRT 475 (586)
T ss_pred HHHHHHHhcccCCCCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
|||+++.|+..|+.+.....+ ...+||.++|++||+++++|++++||+++|+++++.++|.||||++++.+ .
T Consensus 476 ~g~~~~~~~~~~~~~~~~~~~-------~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~-~ 547 (586)
T PRK06276 476 LGMVYQWQNLYYGKRQSEVHL-------GETPDFVKLAESYGVKADRVEKPDEIKEALKEAIKSGEPYLLDIIIDPAE-A 547 (586)
T ss_pred hHHHHHHHHHHhCCCcccccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecccc-c
Confidence 999998887766544332211 23589999999999999999999999999999999999999999999876 4
Q ss_pred ccccCCCc
Q 040733 621 VPMIPYDK 628 (643)
Q Consensus 621 ~p~~~~~~ 628 (643)
.|+.+++.
T Consensus 548 ~~~~~~~~ 555 (586)
T PRK06276 548 LPMVPPGG 555 (586)
T ss_pred CCcCCCCC
Confidence 45665553
No 30
>PRK05858 hypothetical protein; Provisional
Probab=100.00 E-value=5.5e-100 Score=855.36 Aligned_cols=531 Identities=25% Similarity=0.371 Sum_probs=464.2
Q ss_pred CCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 66 PDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 66 ~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
|.+.|+++|+|++.|+++||++|||+||+++++|++++.+.+|++|.||||++|+|||+||+|+||+|+||++|+|||++
T Consensus 1 ~~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~ 80 (542)
T PRK05858 1 PAQTGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVT 80 (542)
T ss_pred CcccCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHH
Confidence 45678999999999999999999999999999999999776699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
|+++||++|+.+++|||+|+|+.+....+++.+|++||.++++++|||++++.+++++++.+++||+.|.++++|||||+
T Consensus 81 n~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 160 (542)
T PRK05858 81 NGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVD 160 (542)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 226 IPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 226 iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
||.|++.+++.... .+...+.. ...+.++++.+++++++|.+||||+|++|+|++ ++.+++.+|||++|+||++|
T Consensus 161 iP~dv~~~~~~~~~-~~~~~~~~--~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt 237 (542)
T PRK05858 161 FPMDHAFSMADDDG-RPGALTEL--PAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMN 237 (542)
T ss_pred cChhhhhccccccc-cccccccC--CCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEEc
Confidence 99999987763210 11111111 111236788999999999999999999999997 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
++|||.||++||+++| ...+++++++|+||+||+++++..+.. .|.+++++||||+|+.+++++++.++.+
T Consensus 238 ~~~kg~~~~~hpl~~~-------~~~~~~l~~aD~vl~vG~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i 308 (542)
T PRK05858 238 GMGRGVVPADHPLAFS-------RARGKALGEADVVLVVGVPMDFRLGFG--VFGGTAQLVHVDDAPPQRAHHRPVAAGL 308 (542)
T ss_pred CCcCCCCCCCCchhhh-------HHHHHHHHhCCEEEEECCCCccccccc--ccCCCCEEEEECCCHHHhcCCCCCceEE
Confidence 9999999999999985 345788999999999999987654422 2444679999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC----cccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCC
Q 040733 384 CADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF----SYKTFGEEIPPQYAIQILNELTDDEETIISTGVG 459 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G 459 (643)
.+|++.+|++|.+.+.... ....|.+++++.++++.. ......+++++.++++.|++.+++ |.+|+.|+|
T Consensus 309 ~~d~~~~l~~L~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-~~ivv~d~g 382 (542)
T PRK05858 309 YGDLSAILSALAGAGGDRT-----DHQGWIEELRTAETAARARDAAELADDRDPIHPMRVYGELAPLLDR-DAIVIGDGG 382 (542)
T ss_pred eCCHHHHHHHHHHhccccc-----CcHHHHHHHHHHHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhcCC-CeEEEECCc
Confidence 9999999999988765421 124577666554433221 111223569999999999999998 999999999
Q ss_pred hhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCC
Q 040733 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539 (643)
Q Consensus 460 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~ 539 (643)
++..|..++++...|++|+.++++|+|||++|+|||++++.|+|+||+++|||||+|++|||+|++||++|+++||+||+
T Consensus 383 ~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~~~~eL~Ta~~~~lpi~ivV~NN~ 462 (542)
T PRK05858 383 DFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVIGNNG 462 (542)
T ss_pred HHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcCcHHHHHHHHHcCCCEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 540 YLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 540 ~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
+|+++++.+...|+.+.... ....+||.++|++||+++.+|++++||+++|+++++.++|+||||++++++
T Consensus 463 ~y~~~~~~~~~~~~~~~~~~--------~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~~~~~~- 533 (542)
T PRK05858 463 IWGLEKHPMEALYGYDVAAD--------LRPGTRYDEVVRALGGHGELVTVPAELGPALERAFASGVPYLVNVLTDPSV- 533 (542)
T ss_pred chhhHHHHHHHhcCCccccc--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCcEEEEEEECCCc-
Confidence 99999988776664322111 135689999999999999999999999999999999999999999999875
Q ss_pred cccc
Q 040733 620 VVPM 623 (643)
Q Consensus 620 ~~p~ 623 (643)
..|+
T Consensus 534 ~~~~ 537 (542)
T PRK05858 534 AYPR 537 (542)
T ss_pred CCCC
Confidence 3443
No 31
>PRK08611 pyruvate oxidase; Provisional
Probab=100.00 E-value=5.7e-100 Score=859.84 Aligned_cols=529 Identities=28% Similarity=0.451 Sum_probs=461.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC--CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS--NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
+++++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 82 (576)
T PRK08611 3 KIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIH 82 (576)
T ss_pred CCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHH
Confidence 47999999999999999999999999999999999753 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++||.+++|||+|+|++++...+++.+|++||.++++++|||++++.+++++++.+++|++.|.+++ |||||+|
T Consensus 83 ~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~-GPV~l~i 161 (576)
T PRK08611 83 LLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKK-GVAVLTI 161 (576)
T ss_pred HHHHHHHHhhcCCCEEEEecCCcccccCCCCccccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCC-CCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999975 9999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|.|++.+++...... ..+.+... ...++++.+++++++|++||||+|++|+|+.++.+++.+|+|++|+||++|++|
T Consensus 162 P~Dv~~~~~~~~~~~--~~~~~~~~-~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~~~~PV~tt~~g 238 (576)
T PRK08611 162 PDDLPAQKIKDTTNK--TVDTFRPT-VPSPKPKDIKKAAKLINKAKKPVILAGLGAKHAKEELLAFAEKAKIPIIHTLPA 238 (576)
T ss_pred Chhhhhccccccccc--ccccCCCC-CCCCCHHHHHHHHHHHHcCCCcEEEECcCcchHHHHHHHHHHHhCCCEEEcccc
Confidence 999998776321100 01111111 123577889999999999999999999999888899999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
||++|++||+++|++|..++..++++++++|+||+||++++... .+..++++||||+|+.+++++++.++.|++|
T Consensus 239 kg~~~~~hp~~~G~~g~~~~~~a~~~l~~aDlvl~iG~~~~~~~-----~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D 313 (576)
T PRK08611 239 KGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTNYPYVD-----YLPKKAKAIQIDTDPANIGKRYPVNVGLVGD 313 (576)
T ss_pred ccccCCCCccccccCCCCCcHHHHHHHHhCCEEEEeCCCCCccc-----cCCCCCcEEEEeCCHHHcCCccCCCeeEecC
Confidence 99999999999999999898888999999999999999975321 1233578999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHh----CCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 387 AKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKK----YPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 387 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++.+|++|++.+.... ...|.+.+...+.+ ........+.++++..+++.|++.+++ +.|++.|+|++.
T Consensus 314 ~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l~~-~~ivv~d~G~~~ 386 (576)
T PRK08611 314 AKKALHQLTENIKHVE------DRRFLEACQENMAKWWKWMEEDENNASTPIKPERVMAAIQKIADD-DAVLSVDVGTVT 386 (576)
T ss_pred HHHHHHHHHHhccccc------chHHHHHHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHhhhcCC-CeEEEEcChHHH
Confidence 9999999988775321 12455444322211 111111223569999999999999999 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|..++++...+++|+.+.++|+||||+|+|||++++.|+++||+|+|||||+|++|||+|++||++|+++||+||++||
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~r~~l~~iivV~NN~~~g 466 (576)
T PRK08611 387 VWSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNNQQLA 466 (576)
T ss_pred HHHHhcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhhHHHHHHHHHhCCCeEEEEEeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCccc
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVP 622 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p 622 (643)
|+++.|...+.. .... ....+||.++|++||+++++|++++||+++|+++++.++|+||||.+++.+...|
T Consensus 467 ~i~~~q~~~~~~-~~~~--------~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~vd~~~~~~~ 537 (576)
T PRK08611 467 FIKYEQQAAGEL-EYAI--------DLSDMDYAKFAEACGGKGYRVEKAEELDPAFEEALAQDKPVIIDVYVDPNAAPLP 537 (576)
T ss_pred HHHHHHHHhcCC-cccc--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCcccCCC
Confidence 998877643221 1111 1346899999999999999999999999999999999999999999998775444
No 32
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-99 Score=859.03 Aligned_cols=530 Identities=29% Similarity=0.439 Sum_probs=459.7
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
|.++++++|++.|+++||++|||+||+++++|+++|.++ +|++|.+|||++|+|||+||||+||+|+||++|+|||++|
T Consensus 1 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n 80 (574)
T PRK09124 1 MKQTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLH 80 (574)
T ss_pred CCccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHH
Confidence 357999999999999999999999999999999999876 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.+++|||+|+||++....+++.+|++||.++++++|||++++.+++++++.+++|++.|.++ +|||||+|
T Consensus 81 ~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~-~gPV~l~i 159 (574)
T PRK09124 81 LINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILN-RGVAVVVL 159 (574)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 59999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|.|++.+++.... .....+... ....++++.+++++++|.+||||+||+|+|+.++.+++.+|+|++|+||++|++|
T Consensus 160 P~Dv~~~~~~~~~-~~~~~~~~~--~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~~~a~~~l~~lae~l~~PV~tt~~g 236 (574)
T PRK09124 160 PGDVALKPAPERA-TPHWYHAPQ--PVVTPAEEELRKLAALLNGSSNITLLCGSGCAGAHDELVALAETLKAPIVHALRG 236 (574)
T ss_pred ChhhhhCcccccc-ccccccCCC--CCCCCCHHHHHHHHHHHHcCCCCEEEECcChHhHHHHHHHHHHHhCCceEEcccc
Confidence 9999987763211 000011111 0122567889999999999999999999999878899999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
||+||++||+++|++|..+...++.+++++|+||+||++++... .+.+++++||||+|+.+++++++.++.|++|
T Consensus 237 kg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~-----~~~~~~~ii~id~d~~~~~~~~~~~~~i~~D 311 (574)
T PRK09124 237 KEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTDFPYRQ-----FYPTDAKIIQIDINPGSLGRRSPVDLGLVGD 311 (574)
T ss_pred cccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEECCCCCccc-----ccCCCCcEEEeeCCHHHhCCCCCCCeEEEcc
Confidence 99999999999999999898888899999999999999985321 1334578999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHHHHHH----HHHhCCC--cccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCCh
Q 040733 387 AKLVFNRMNMILESKGVGFMFDFSAWREELHE----QKKKYPF--SYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQ 460 (643)
Q Consensus 387 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~----~~~~~~~--~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~ 460 (643)
++.+|++|++.+.... ...|.+.+.+ .+..... .......++++..+++.|++.+++ +.+++.|+|+
T Consensus 312 ~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-~~ivv~d~g~ 384 (574)
T PRK09124 312 VKATLAALLPLLEEKT------DRKFLDKALEHYRKARKGLDDLAVPSDGGKPIHPQYLARQISEFAAD-DAIFTCDVGT 384 (574)
T ss_pred HHHHHHHHHHhhhccC------ChHHHHHHHHHHHHHHHhhhhhhcccCCCCcCCHHHHHHHHHhhcCC-CcEEEEcCCH
Confidence 9999999988765321 1235443322 1111110 001123569999999999999999 9999999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+..|..+++..+++++|+.++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|++||++|+++||+||++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 464 (574)
T PRK09124 385 PTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQLKLPVKIVVFNNSV 464 (574)
T ss_pred HHHHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhccHHHHHHHHHhCCCeEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
||++++.|... +....++ +...+||.++|++||+++++|++++||+++|+++++.++|+||||.+++++..
T Consensus 465 ~g~i~~~~~~~-~~~~~~~--------~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~i~~~~~~ 535 (574)
T PRK09124 465 LGFVAMEMKAG-GYLTDGT--------DLHNPDFAAIAEACGITGIRVEKASELDGALQRAFAHDGPALVDVVTAKQELA 535 (574)
T ss_pred cccHHHHHHhc-CCccccC--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCcccC
Confidence 99998766532 1111111 13458999999999999999999999999999999999999999999988765
Q ss_pred cc
Q 040733 621 VP 622 (643)
Q Consensus 621 ~p 622 (643)
.|
T Consensus 536 ~~ 537 (574)
T PRK09124 536 MP 537 (574)
T ss_pred CC
Confidence 43
No 33
>PRK06154 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-99 Score=850.00 Aligned_cols=532 Identities=26% Similarity=0.358 Sum_probs=458.0
Q ss_pred CCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHh--CCcEEEEEccchh
Q 040733 66 PDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS--GTPGVCLVSSGPG 143 (643)
Q Consensus 66 ~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~s--g~~gv~~~t~GpG 143 (643)
+.+.++++|+|++.|+++||++|||+|| ++|+++|.+.+|++|.||||++|+||||||+|+| |+++||++|+|||
T Consensus 16 ~~~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GPG 92 (565)
T PRK06154 16 EAKTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAAAGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGPG 92 (565)
T ss_pred CcCcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHhcCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECCCcc
Confidence 4556899999999999999999999995 5999999876699999999999999999999999 4999999999999
Q ss_pred hHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEE
Q 040733 144 VTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVL 223 (643)
Q Consensus 144 ~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~ 223 (643)
++|+++||++||.+++|||+|+|+.++...+.+ +++|+.++++++|||++++.+++++++++++||+.|+++|+||||
T Consensus 93 ~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~--~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~ 170 (565)
T PRK06154 93 AENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA--PNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVV 170 (565)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeCCCCcccccCC--CCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHHhcCCCceEE
Confidence 999999999999999999999999998766544 347889999999999999999999999999999999999999999
Q ss_pred EEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCcee
Q 040733 224 IDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 224 i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~ 301 (643)
|+||.|++.+++... +... .+. . .....++++.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||+
T Consensus 171 l~iP~Dv~~~~~~~~-~~~~-~~~-~-~~~~~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~PV~ 246 (565)
T PRK06154 171 LELPVDVLAEELDEL-PLDH-RPS-R-RSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKELAELLEIPVM 246 (565)
T ss_pred EecchHHhhhhcccc-cccc-cCC-C-CCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEE
Confidence 999999998776321 0000 011 0 111236788999999999999999999999997 678999999999999999
Q ss_pred ecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCe
Q 040733 302 CTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDV 381 (643)
Q Consensus 302 tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~ 381 (643)
+|++|||+||++||+++|+.|..+...+++++++||+||+||++++++..+. .+.+++++||||+|+.+++++++.++
T Consensus 247 tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~~~~aDlvL~lG~~l~~~~~~~--~~~~~~~vI~id~d~~~~~~~~~~~~ 324 (565)
T PRK06154 247 TTLNGKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCSLTRSYYGL--PMPEGKTIIHSTLDDADLNKDYPIDH 324 (565)
T ss_pred ECCCcccCCCCCCccccCCCCCCCcHHHHHHHHhCCEEEEECCCCcccccCc--cCCCCCeEEEEECCHHHhccccCCCe
Confidence 9999999999999999999888788888999999999999999998754322 25567899999999999999999999
Q ss_pred eEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC----cccCCCCCCCHHHHHHHHHhcCCCCCeEEEeC
Q 040733 382 SICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF----SYKTFGEEIPPQYAIQILNELTDDEETIISTG 457 (643)
Q Consensus 382 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d 457 (643)
.|.+|++.+|++|++.+..+..........|.+++...+.++.. .......++++..+++.|++.++++|.|++.|
T Consensus 325 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~d~iv~~D 404 (565)
T PRK06154 325 GLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHAVDIKTVIITHD 404 (565)
T ss_pred eEEcCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHHHhcCCCCEEEEEC
Confidence 99999999999999888753211011234687666554433211 11122357999999999999997438999999
Q ss_pred CChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEe
Q 040733 458 VGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLIN 537 (643)
Q Consensus 458 ~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~N 537 (643)
+|++..|..++++...|++|++++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++|||+|+++||+|
T Consensus 405 ~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~lpi~~vV~N 484 (565)
T PRK06154 405 AGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVRERIPILTILLN 484 (565)
T ss_pred CcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh---CCCcEEEEEEe
Q 040733 538 NQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE---TPGPYLLDVMV 614 (643)
Q Consensus 538 N~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~---~~gp~lIeV~v 614 (643)
|++||++++.+...+ .+.... ...+||.++|++||+++++|++.+||+++|+++++ .++|+||||++
T Consensus 485 N~~yg~~~~~~~~~~-~~~~~~---------~~~~df~~lA~a~G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIev~v 554 (565)
T PRK06154 485 NFSMGGYDKVMPVST-TKYRAT---------DISGDYAAIARALGGYGERVEDPEMLVPALLRALRKVKEGTPALLEVIT 554 (565)
T ss_pred CCccceeehhhhhhc-Cccccc---------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhccCCCeEEEEEEe
Confidence 999999987765432 111111 13479999999999999999999999999999996 68999999999
Q ss_pred CCCC
Q 040733 615 SYQE 618 (643)
Q Consensus 615 ~~~~ 618 (643)
++++
T Consensus 555 ~~~~ 558 (565)
T PRK06154 555 SEET 558 (565)
T ss_pred ChHH
Confidence 8865
No 34
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-99 Score=852.98 Aligned_cols=525 Identities=27% Similarity=0.400 Sum_probs=459.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
-|+++++|++.|+++||++|||+||+++++|+++|.++ +|++|.||||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~ 81 (578)
T PRK06546 2 AKTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHL 81 (578)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHH
Confidence 37999999999999999999999999999999999887 49999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++|+.+++|||+|+|+++....+++.+|++||.++++++|||+++|.+++++++.+++|++.|.+ ++|||||+||
T Consensus 82 ~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~lP 160 (578)
T PRK06546 82 INGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVA-GGGVSVVTLP 160 (578)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccccCCCCccccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 5699999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCC
Q 040733 228 VDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGL 307 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gk 307 (643)
.|++.+++..... ....+... ....++++.+++++++|++||||+|++|+|++++.+++.+|+|++|+||++|++||
T Consensus 161 ~Dv~~~~~~~~~~-~~~~~~~~--~~~~~~~~~i~~a~~~L~~A~rPvii~G~g~~~a~~~l~~lae~~g~Pv~~t~~gk 237 (578)
T PRK06546 161 GDIADEPAPEGFA-PSVISPRR--PTVVPDPAEVRALADAINEAKKVTLFAGAGVRGAHAEVLALAEKIKAPVGHSLRGK 237 (578)
T ss_pred hhhhhcccccccc-ccccccCC--CCCCCCHHHHHHHHHHHHcCCCcEEEECcchHHHHHHHHHHHHHhCcceEECcccc
Confidence 9999876642110 00011111 01236788999999999999999999999999888999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCH
Q 040733 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADA 387 (643)
Q Consensus 308 g~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~ 387 (643)
|+||++||+++|+.|..++..+++++++|||||+||++++. ..|.++.++||||.|+.++++++..++.|.+|+
T Consensus 238 g~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~------~~~~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~ 311 (578)
T PRK06546 238 EWIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILLGTDFPY------DQFLPDVRTAQVDIDPEHLGRRTRVDLAVHGDV 311 (578)
T ss_pred cCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCh------hhcCCCCcEEEEeCCHHHhCCCCCCCeEEEcCH
Confidence 99999999999999999999999999999999999999752 234556789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhC----CCcc---cCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCCh
Q 040733 388 KLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKY----PFSY---KTFGEEIPPQYAIQILNELTDDEETIISTGVGQ 460 (643)
Q Consensus 388 ~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~----~~~~---~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~ 460 (643)
+.+|++|++.|.... ...|.+++...+.++ .... .....++++..+++.|++.+++ +.|++.|.|+
T Consensus 312 ~~~l~~L~~~L~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-~~ivv~d~G~ 384 (578)
T PRK06546 312 AETIRALLPLVKEKT------DRRFLDRMLKKHARKLEKVVGAYTRKVEKHTPIHPEYVASILDELAAD-DAVFTVDTGM 384 (578)
T ss_pred HHHHHHHHHhhcccC------ChHHHHHHHHHHHHHHhhhhhhhccccCCCCCcCHHHHHHHHHHhccC-CcEEEECCcH
Confidence 999999998886421 124554332221111 0000 1123469999999999999998 9999999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+..|..+++...++++++.++++|+|||++|+|||+++++|+++||+|+|||||+|+++||+|+++|++|+++||+||++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~~~~el~Ta~~~~lpv~~vV~NN~~ 464 (578)
T PRK06546 385 CNVWAARYITPNGRRRVIGSFRHGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKLYDLPVKVVVFNNST 464 (578)
T ss_pred HHHHHHHhcCCCCCceEEccCCcccccchhHHHHHHHHhCCCCcEEEEEcCchHhhhHHHHHHHHHhCCCeEEEEEECCc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
||++++.|...+. +.... ....+||.++|++||+++.+|++++||+++|+++++.+||+||||.+++.+.
T Consensus 465 ~g~i~~~q~~~~~-~~~~~--------~~~~~df~~lA~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIev~~~~~~~ 534 (578)
T PRK06546 465 LGMVKLEMLVDGL-PDFGT--------DHPPVDYAAIAAALGIHAVRVEDPKDVRGALREAFAHPGPALVDVVTDPNAL 534 (578)
T ss_pred cccHHHHHHhcCC-Ccccc--------cCCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCcc
Confidence 9999876653221 11111 1356899999999999999999999999999999999999999999998763
No 35
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=3e-99 Score=850.61 Aligned_cols=519 Identities=28% Similarity=0.464 Sum_probs=449.9
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
++++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||||+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~ 81 (549)
T PRK06457 2 PSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLN 81 (549)
T ss_pred CcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHH
Confidence 58999999999999999999999999999999998767999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
||++|+.+++|||+|+||++....+++.+|++||.++++++|||++++.+++++++.+++||+.|+++ +|||||+||.|
T Consensus 82 ~l~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~D 160 (549)
T PRK06457 82 GLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISK-RGVAHINLPVD 160 (549)
T ss_pred HHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 59999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCC
Q 040733 230 VQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGL 309 (643)
Q Consensus 230 v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~ 309 (643)
++.++... ... . .. ..+.......+++++++|++||||+|++|+|+.++.+++++|||++|+||++|++|||.
T Consensus 161 v~~~~~~~--~~~-~---~~-~~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~~~a~~~l~~lAe~~~~PV~tt~~gkg~ 233 (549)
T PRK06457 161 ILRKSSEY--KGS-K---NT-EVGKVKYSIDFSRAKELIKESEKPVLLIGGGTRGLGKEINRFAEKIGAPIIYTLNGKGI 233 (549)
T ss_pred Hhhccccc--ccc-c---cc-CCCCCCCHHHHHHHHHHHHcCCCcEEEECcchhhHHHHHHHHHHHHCCCEEEccccccc
Confidence 98765421 110 0 00 00111123579999999999999999999999888899999999999999999999999
Q ss_pred CCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHH
Q 040733 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKL 389 (643)
Q Consensus 310 ~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~ 389 (643)
||++||+++|++|..++..++++++++|+||++|+++++.. .+.++.++||||.|+.+++++++.++.|++|++.
T Consensus 234 ~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~-----~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~ 308 (549)
T PRK06457 234 LPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSFPYVN-----FLNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAE 308 (549)
T ss_pred CCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCChhh-----cCCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHH
Confidence 99999999999998899889999999999999999985321 1233678999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCC----ChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHH
Q 040733 390 VFNRMNMILESKGVGFMF----DFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWA 465 (643)
Q Consensus 390 ~L~~L~~~l~~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~ 465 (643)
+|+.+.. ........ ....|.+++.+... ....++++.++++.|++.+++ +.+++.|+|++..|.
T Consensus 309 ~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~l~~~l~~-~~iiv~d~g~~~~~~ 377 (549)
T PRK06457 309 FLNIDIE---EKSDKFYEELKGKKEDWLDSISKQEN-------SLDKPMKPQRVAYIVSQKCKK-DAVIVTDTGNVTMWT 377 (549)
T ss_pred HHHHHhh---cccchhHHHHHHHHHHHHHHHHHhhc-------CCCCCcCHHHHHHHHHhhCCC-CeEEEECCcHHHHHH
Confidence 9954322 11100000 11234433332211 123469999999999999999 899999999999999
Q ss_pred HHhccccCCCeEEecCCCcccccchHHHHHHHHhCC-CCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhh
Q 040733 466 IQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANP-GAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544 (643)
Q Consensus 466 ~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p-~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 544 (643)
.+++...++++|+.++++|+|||++|+|||+++++| +|+||+|+|||||+|++|||+|+++|++|+++||+||++||++
T Consensus 378 ~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~~~eL~Ta~~~~lpi~ivV~NN~~~g~i 457 (549)
T PRK06457 378 ARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPVKIIIYNNSKLGMI 457 (549)
T ss_pred HHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhhHHHHHHHHHHCCCeEEEEEECCccchH
Confidence 999998889999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcc
Q 040733 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVV 621 (643)
Q Consensus 545 ~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~ 621 (643)
++.|...+ ....+. ....+||.++|++||+++++|++++||+++|+++++.++|+||||++++++...
T Consensus 458 ~~~q~~~~-~~~~~~--------~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~~~~ 525 (549)
T PRK06457 458 KFEQEVMG-YPEWGV--------DLYNPDFTKIAESIGFKGFRLEEPKEAEEIIEEFLNTKGPAVLDAIVDPNERPM 525 (549)
T ss_pred HHHHHHhc-CCcccc--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCccccCC
Confidence 98775432 111111 134689999999999999999999999999999999999999999999877543
No 36
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=100.00 E-value=6.2e-99 Score=850.07 Aligned_cols=528 Identities=30% Similarity=0.493 Sum_probs=464.8
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
+.++++|+|++.|+++||++|||+||+++++|+++|.+++ |++|.+|||++|+|||+||||++|||+||++|+|||++|
T Consensus 6 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N 85 (557)
T PRK08199 6 RARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATN 85 (557)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHH
Confidence 4579999999999999999999999999999999998876 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++||.+++|||+|+||+++...+++.+|++||..+++++|||++++.+++++++.+++||+.|.++++|||||+|
T Consensus 86 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~i 165 (557)
T PRK08199 86 ASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLAL 165 (557)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCCcccccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++.+++... . .+.+. .....++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|+
T Consensus 166 P~dl~~~~~~~~--~---~~~~~-~~~~~~~~~~i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~ 239 (557)
T PRK08199 166 PEDVLSETAEVP--D---APPYR-RVAAAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAF 239 (557)
T ss_pred CHhHhhCccccc--c---cCCcC-CCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcC
Confidence 999988765211 0 01111 111236788899999999999999999999986 578999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcccccc---CCceEEEEcCCcccccCCCCCCe
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA---TRAKIVHIDIDSNEIGKVKLPDV 381 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~---~~~~iI~Id~d~~~i~~~~~~~~ 381 (643)
+|||++|++||+++|.+|..++..++++++++|+||+||++++++.+..+..+. ++.++||||.|+.++++++..++
T Consensus 240 ~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~ 319 (557)
T PRK08199 240 RRQDLFDNRHPNYAGDLGLGINPALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDL 319 (557)
T ss_pred CcCCCCCCCChhhccCCcCcCCHHHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCe
Confidence 999999999999999999888888899999999999999999888775443332 46789999999999999999999
Q ss_pred eEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC--cccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCC
Q 040733 382 SICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF--SYKTFGEEIPPQYAIQILNELTDDEETIISTGVG 459 (643)
Q Consensus 382 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G 459 (643)
.|++|++.+|++|++.+.. ....|.+.+...+..+.. .......++++..+++.|++.+++ +.+|+.|+|
T Consensus 320 ~i~~D~~~~l~~L~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ii~~d~g 391 (557)
T PRK08199 320 AIVADPAAFAAALAALEPP-------ASPAWAEWTAAAHADYLAWSAPLPGPGAVQLGEVMAWLRERLPA-DAIITNGAG 391 (557)
T ss_pred EEecCHHHHHHHHHhcccc-------cchhHHHHHHHHHHHHHhhccccCCCCCcCHHHHHHHHHHhCCC-CeEEEECCh
Confidence 9999999999999875431 113465544433322211 001123469999999999999999 999999999
Q ss_pred hhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCC
Q 040733 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539 (643)
Q Consensus 460 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~ 539 (643)
++..|..++++..+++.++.++ +|+|||++|+|||+++++|+++||+|+|||||+|+++||+|++++++|+++||+||+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~-~g~mG~glpaaiGa~la~p~~~vv~i~GDGsf~~~~~el~ta~~~~l~i~~vv~nN~ 470 (557)
T PRK08199 392 NYATWLHRFFRFRRYRTQLAPT-SGSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQYGLPIIVIVVNNG 470 (557)
T ss_pred HHHHHHHHhcCcCCCCeEECCC-CccccchHHHHHHHHHhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeCC
Confidence 9999999999998888888654 599999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 540 YLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 540 ~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
+|++++..|+..|.++..... ...+||.++|++||+++++|++++||+++|+++++.+||+||||++++++
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~--------~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~li~v~~~~~~ 541 (557)
T PRK08199 471 MYGTIRMHQEREYPGRVSGTD--------LTNPDFAALARAYGGHGETVERTEDFAPAFERALASGKPALIEIRIDPEA 541 (557)
T ss_pred cchHHHHHHHHhcCCcccccc--------CCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCHHH
Confidence 999999888776654433322 24589999999999999999999999999999999999999999998765
No 37
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=100.00 E-value=1.3e-98 Score=851.33 Aligned_cols=536 Identities=25% Similarity=0.395 Sum_probs=468.4
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+.|+++++|++.|+++||++|||+||+.+++|+++|.+.+|++|.||||++|+|||+||+|++|||+||++|+|||++|+
T Consensus 4 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~ 83 (588)
T PRK07525 4 MKMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNF 83 (588)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 45899999999999999999999999999999999976569999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++|+.+++|||+|+|+.+....+++.+|++||.++++++|||++++.+++++++.+++|++.|+++ +|||||+||
T Consensus 84 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~-~GPV~i~iP 162 (588)
T PRK07525 84 VTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRE-SGPAQINIP 162 (588)
T ss_pred HHHHHHHhhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcC-CCCEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 599999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCC
Q 040733 228 VDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~ 305 (643)
.|++.++++... +...+. ....+++..+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|++
T Consensus 163 ~Dv~~~~~~~~~--~~~~~~----~~~~~~~~~i~~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT~~ 236 (588)
T PRK07525 163 RDYFYGVIDVEI--PQPVRL----ERGAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYL 236 (588)
T ss_pred hhHhhhhccccc--CccccC----CCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCeEEccc
Confidence 999987763211 111111 11235778899999999999999999999997 6789999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccC---ccccccCCceEEEEcCCcccccCCCCCCee
Q 040733 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTS---KLEDFATRAKIVHIDIDSNEIGKVKLPDVS 382 (643)
Q Consensus 306 gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~---~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~ 382 (643)
|||+||++||+++|.+|..++..+++++++||+||+||++++++.+. .+..|.+++++||||.|+.+++++++.++.
T Consensus 237 gkg~~p~~hpl~~G~~g~~g~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~ 316 (588)
T PRK07525 237 HNDAFPGSHPLWVGPLGYNGSKAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVG 316 (588)
T ss_pred ccccCCCCCccccccCcccCcHHHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCce
Confidence 99999999999999999888888899999999999999999876553 223355678999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHhhcC-CC-C--------CCChhHHHHHHHHHHHhCCC---cc-----cCCCCCCCHHHHHHHHH
Q 040733 383 ICADAKLVFNRMNMILESKG-VG-F--------MFDFSAWREELHEQKKKYPF---SY-----KTFGEEIPPQYAIQILN 444 (643)
Q Consensus 383 i~~D~~~~L~~L~~~l~~~~-~~-~--------~~~~~~w~~~~~~~~~~~~~---~~-----~~~~~~i~~~~~~~~L~ 444 (643)
|++|++.+|++|++.+.... .. . ......|.+++.+.+..... .. ....+++++.++++.|+
T Consensus 317 i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 396 (588)
T PRK07525 317 ICGDAKAVARELLARLAERLAGDAGREERKALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALREIQ 396 (588)
T ss_pred EecCHHHHHHHHHHhhhhhccccccchhhhhhhhhhHHHHHHHHHHHHhccccccccccccccccCCCCcCHHHHHHHHH
Confidence 99999999999998886421 00 0 01123566555444322210 00 01124699999999999
Q ss_pred hcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHH
Q 040733 445 ELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAI 524 (643)
Q Consensus 445 ~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta 524 (643)
+.+++ |.||+.|+|++..|..++++..+|++|++++++|+|||++|+|||++++.|+|+||+|+|||||+|++|||+|+
T Consensus 397 ~~l~~-d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~~~~~el~Ta 475 (588)
T PRK07525 397 KALPE-DAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGISMNEVMTA 475 (588)
T ss_pred HhCCC-CcEEEECCcccHHHHHHhcccCCCCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHhccHHHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC
Q 040733 525 KAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET 604 (643)
Q Consensus 525 ~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~ 604 (643)
++|++|+++||+||++|+++++.|...|+.+..+..+ ...+||.++|++||+++++|++.+||+++|+++++.
T Consensus 476 ~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~ 548 (588)
T PRK07525 476 VRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTEL-------DNNVSYAGIAEAMGAEGVVVDTQEELGPALKRAIDA 548 (588)
T ss_pred HHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhc
Confidence 9999999999999999999998887766644333221 235899999999999999999999999999999975
Q ss_pred ---CCcEEEEEEeCCCC
Q 040733 605 ---PGPYLLDVMVSYQE 618 (643)
Q Consensus 605 ---~gp~lIeV~v~~~~ 618 (643)
+||+||||+++++.
T Consensus 549 ~~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 549 QNEGKTTVIEIMCNQEL 565 (588)
T ss_pred CCCCCcEEEEEEecccc
Confidence 59999999998654
No 38
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=100.00 E-value=2.8e-98 Score=845.94 Aligned_cols=527 Identities=25% Similarity=0.368 Sum_probs=455.4
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC--CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS--NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+||||||+|+|||||||++|+|||++|+++
T Consensus 1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~ 80 (575)
T TIGR02720 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN 80 (575)
T ss_pred CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence 57999999999999999999999999999999764 4999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
||++||.+++|||+|+|+.++...+.+.+|++||..+++++|||++++.+++++++.+++|++.|.+ ++|||||+||.|
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~D 159 (575)
T TIGR02720 81 GLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVD 159 (575)
T ss_pred HHHHHhhcCCCEEEEecCCccccCCCCCcceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 669999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCC
Q 040733 230 VQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGL 309 (643)
Q Consensus 230 v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~ 309 (643)
++.+++......... +.+.......++++.+++++++|++||||+|++|+|++++.+++.+|+|++|+||++|++|||.
T Consensus 160 v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~l~~PV~tt~~gkg~ 238 (575)
T TIGR02720 160 FGWQEIPDNDYYASS-VSYQTPLLPAPDVEAVTRAVQTLKAAERPVIYYGIGARKAGEELEALSEKLKIPLISTGLAKGI 238 (575)
T ss_pred hhhcccccccccccc-ccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchhhHHHHHHHHHHHhCCCEEEccccccc
Confidence 987765321000000 0001011124688899999999999999999999999988899999999999999999999999
Q ss_pred CCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHH
Q 040733 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKL 389 (643)
Q Consensus 310 ~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~ 389 (643)
||++||+++|++|..++..++++++++|+||++|++++...+. ..+....++||||+|+.++++++..++.|.+|++.
T Consensus 239 ~~~~hpl~~G~~g~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~--~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~ 316 (575)
T TIGR02720 239 IEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYPFAEVS--KAFKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKK 316 (575)
T ss_pred CCCCCcccccCCcCCCcHHHHHHHHhCCEEEEeCCCCCccccc--cccCCCceEEEEeCCHHHhCCCCCCCeEEecCHHH
Confidence 9999999999999888888899999999999999998643321 12333445699999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHHHHHHH----HHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHH
Q 040733 390 VFNRMNMILESKGVGFMFDFSAWREELHE----QKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWA 465 (643)
Q Consensus 390 ~L~~L~~~l~~~~~~~~~~~~~w~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~ 465 (643)
+|++|++.++... ...|.++... ..+...........++++..+++.|++.+++ |.|++.|+|++..|.
T Consensus 317 ~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-d~ii~~D~g~~~~~~ 389 (575)
T TIGR02720 317 ALAAILAQVEPRE------STPWWQANVANVKNWRAYLASLEDKTEGPLQAYQVYRAINKIAED-DAIYSIDVGDININS 389 (575)
T ss_pred HHHHHHHhccccC------ChHHHHHHHHHHHHHHHHhhhhhccCCCCcCHHHHHHHHHHhCCC-CcEEEeCCcHHHHHH
Confidence 9999998775421 1234333221 1111110001123579999999999999999 999999999999999
Q ss_pred HHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 466 IQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 466 ~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
.++++.+.+++|++++++|+|||++|+|||+++++|+|+||+|+|||||+|++|||+|++||++|+++||+||++||+++
T Consensus 390 ~~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~~~eL~Tavr~~lpi~~VV~NN~~yg~i~ 469 (575)
T TIGR02720 390 NRHLKMTPKNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINIVFSNCTYGFIK 469 (575)
T ss_pred HHhCCcCCCCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhhHHHHHHHHHhCCCeEEEEEeCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH--hCCCcEEEEEEeCCCC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML--ETPGPYLLDVMVSYQE 618 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al--~~~gp~lIeV~v~~~~ 618 (643)
+.|... ..++.+. ....+||+++|++||+++++|++.+||+++|++++ +.++|+||||++++++
T Consensus 470 ~~~~~~-~~~~~~~--------~~~~~df~~iA~a~G~~~~~v~~~~el~~al~~a~~~~~~~p~liev~i~~~~ 535 (575)
T TIGR02720 470 DEQEDT-NQPLIGV--------DFNDADFAKIAEGVGAVGFRVNKIEQLPAVFEQAKAIKQGKPVLIDAKITGDR 535 (575)
T ss_pred HHHHHh-CCCcccc--------cCCCCCHHHHHHHCCCEEEEeCCHHHHHHHHHHHHhhCCCCcEEEEEEeCCCC
Confidence 877432 2222111 13468999999999999999999999999999999 7899999999999875
No 39
>PRK07524 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-98 Score=838.34 Aligned_cols=523 Identities=28% Similarity=0.460 Sum_probs=452.3
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
.+++|+|++.|+++||++|||+||+.+++|+++|.+++|++|.+|||++|+|||+||||+|||||||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~ 81 (535)
T PRK07524 2 TTCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIAT 81 (535)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHH
Confidence 48999999999999999999999999999999998767999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCC--CCCc-cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTD--AFQE-IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
||++||.+++|||+|+|+.++...+++ .+|+ .||.++++++|||++++.+++++++.+++|++.|+++|+|||||+|
T Consensus 82 gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 161 (535)
T PRK07524 82 AMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEI 161 (535)
T ss_pred HHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 999999999999999999998887764 6677 5999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|.|++.+++...... .+ .. .....++++.+++++++|.+||||+|++|.|+.++.+++.+|+|++++||++|++|
T Consensus 162 P~Dv~~~~~~~~~~~---~~-~~-~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~l~~pV~tt~~~ 236 (535)
T PRK07524 162 PLDVLAAPADHLLPA---PP-TR-PARPGPAPAALAQAAERLAAARRPLILAGGGALAAAAALRALAERLDAPVALTINA 236 (535)
T ss_pred CHhHHhcccccccCc---cc-cc-CCCCCCCHHHHHHHHHHHHhCCCcEEEECCChHHHHHHHHHHHHHHCCCEEEcccc
Confidence 999998876421110 01 00 11123678899999999999999999999999988899999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCc--cccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSK--LEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~--~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
||.||++||+++|..| ++..++++++++|+||+||+++++..+.. ...|.++.++||||+|+.+++++++.++.|.
T Consensus 237 kg~~p~~hp~~~G~~~--~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~ 314 (535)
T PRK07524 237 KGLLPAGHPLLLGASQ--SLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALV 314 (535)
T ss_pred cccCCCCChhhccCCC--CCHHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEe
Confidence 9999999999999775 56788999999999999999987554321 1235556789999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHH-HHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHH
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWR-EELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQM 463 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~ 463 (643)
+|++.+|++|++.++.+. ....|. +++...+++..... ....+++..+++.|++.++ +.+++.|.|++.+
T Consensus 315 ~D~~~~L~~L~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~--~~~i~~d~g~~~~ 385 (535)
T PRK07524 315 GDARAALEALLARLPGQA-----AAADWGAARVAALRQALRAEW--DPLTAAQVALLDTILAALP--DAIFVGDSTQPVY 385 (535)
T ss_pred cCHHHHHHHHHHhccccC-----CchhhHHHHHHHHHHhchhhc--cccccCHHHHHHHHHHhCC--CCEEEeCCcHHHH
Confidence 999999999998876432 122464 23323333221111 1234677889999999998 4667789999999
Q ss_pred HHHHhccccCCCeEEe-cCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 464 WAIQFYMYKRARQLLT-SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 464 ~~~~~~~~~~p~~~~~-~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
|..++++.++|++|+. ++++|+|||++|+|||+++|+|+++||+++|||||+|++|||+|+++||+|+++||+||++||
T Consensus 386 ~~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~ta~~~~lpi~~vV~NN~~~g 465 (535)
T PRK07524 386 AGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADLPLIVLLWNNDGYG 465 (535)
T ss_pred HHHHhcccCCCCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEEECCchH
Confidence 9999999999999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCC
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~ 617 (643)
++++.|..... ...+. +...+||.++|++||+++++|++++||+++|+++++.+||+||||++++-
T Consensus 466 ~i~~~~~~~~~-~~~~~--------~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~~ 531 (535)
T PRK07524 466 EIRRYMVARDI-EPVGV--------DPYTPDFIALARAFGCAAERVADLEQLQAALRAAFARPGPTLIEVDQACW 531 (535)
T ss_pred HHHHHHHHhcC-Ccccc--------CCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEEECCcc
Confidence 99987764321 11111 23468999999999999999999999999999999999999999999763
No 40
>PRK07064 hypothetical protein; Provisional
Probab=100.00 E-value=9.8e-98 Score=839.54 Aligned_cols=529 Identities=26% Similarity=0.385 Sum_probs=459.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++++|++.|+++||++|||+||+++++|++++.+++ |++|.+|||++|+|||+||||+||||+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 468999999999999999999999999999999997654 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCC--CCc-cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEE
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDA--FQE-IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLI 224 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~--~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i 224 (643)
++||++||.+++|||+|+|++++...+++. +|+ +||.++++++|||++++.+++++++.+++||+.|.++++|||||
T Consensus 82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (544)
T PRK07064 82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSV 161 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCcEEE
Confidence 999999999999999999999988877763 555 69999999999999999999999999999999999999999999
Q ss_pred EcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecC
Q 040733 225 DIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 225 ~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~ 304 (643)
+||.|++.+++..... ....+ . . ...++++.+++++++|.+||||+|++|.|+.++.+++.+|+| +|+||++|+
T Consensus 162 ~iP~dv~~~~~~~~~~-~~~~~--~-~-~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~a~~~l~~lae-~~~pv~~t~ 235 (544)
T PRK07064 162 EIPIDIQAAEIELPDD-LAPVH--V-A-VPEPDAAAVAELAERLAAARRPLLWLGGGARHAGAEVKRLVD-LGFGVVTST 235 (544)
T ss_pred EeCHhHhhcccccccc-ccccc--C-C-CCCCCHHHHHHHHHHHHhCCCCEEEECCChHhHHHHHHHHHH-cCCCEEEcc
Confidence 9999998877632110 00011 1 1 123678899999999999999999999999888889999999 999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+|||+||++||+++|++| ++..+++++++|||||+||++++++.+..|. +....++||||+|+.+++++++.++.+.
T Consensus 236 ~~kg~~~~~hp~~~G~~~--~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~ 312 (544)
T PRK07064 236 QGRGVVPEDHPASLGAFN--NSAAVEALYKTCDLLLVVGSRLRGNETLKYS-LALPRPLIRVDADAAADGRGYPNDLFVH 312 (544)
T ss_pred CccccCCCCChhhcccCC--CCHHHHHHHHhCCEEEEecCCCCcccccccc-cCCCCceEEEeCCHHHhCCcCCCCceEe
Confidence 999999999999999987 6777889999999999999999888776553 3234589999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCH-HHHHHHHHhcCCCCCeEEEeCCCh-hH
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPP-QYAIQILNELTDDEETIISTGVGQ-HQ 462 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~L~~~l~~~d~iv~~d~G~-~~ 462 (643)
+|++.+|++|++.+.... .....|.+++...+.++... ..+.+.+ ..+++.|++.+++ +.+++.|+|. +.
T Consensus 313 ~d~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~-~~ii~~d~~~~~~ 384 (544)
T PRK07064 313 GDAARVLARLADRLEGRL----SVDPAFAADLRAAREAAVAD---LRKGLGPYAKLVDALRAALPR-DGNWVRDVTISNS 384 (544)
T ss_pred cCHHHHHHHHHHhhhhcc----ccchHHHHHHHHHHHhhhhh---cccccCcHHHHHHHHHHhCCC-CCEEEeCCccchH
Confidence 999999999998775421 11246877666554443221 1233555 4699999999999 9999999984 58
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|..++++...|++++++.+ |+|||++|+|||+++|+|+++||+|+|||||+|++|||+|++||++|+++||+||++||
T Consensus 385 ~~~~~~~~~~~p~~~~~~~~-g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~yg 463 (544)
T PRK07064 385 TWGNRLLPIFEPRANVHALG-GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANMVIVLMNDGGYG 463 (544)
T ss_pred HHHHHhcCccCCCceeccCC-CccccccchhhhhhhhCcCCcEEEEEcchHhhhhHHHHHHHHHhCCCeEEEEEeCChhH
Confidence 89999999999998887766 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCccc
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVP 622 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p 622 (643)
|++.+|...|+.+..... ...+||.++|++||+++++|++++||+++|+++++.++|+||||.++. ++.+|
T Consensus 464 ~~~~~~~~~~~~~~~~~~--------~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~~~~-~~~~~ 534 (544)
T PRK07064 464 VIRNIQDAQYGGRRYYVE--------LHTPDFALLAASLGLPHWRVTSADDFEAVLREALAKEGPVLVEVDMLS-IGPFA 534 (544)
T ss_pred HHHHHHHHhcCCcccccc--------CCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEEEEccc-ccccC
Confidence 999998766654433221 346899999999999999999999999999999999999999999984 33444
Q ss_pred cc
Q 040733 623 MI 624 (643)
Q Consensus 623 ~~ 624 (643)
+.
T Consensus 535 ~~ 536 (544)
T PRK07064 535 AA 536 (544)
T ss_pred CC
Confidence 44
No 41
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=100.00 E-value=1.3e-97 Score=838.91 Aligned_cols=530 Identities=23% Similarity=0.355 Sum_probs=451.8
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
++++|+|++.|+++||++|||+||+.++++++++.+.+|++|.+|||++|+|||+||+|+||+||||++|+|||++|+++
T Consensus 3 ~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~ 82 (554)
T TIGR03254 3 TDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLT 82 (554)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhhcCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHH
Confidence 57999999999999999999999999999999997656999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCccccc--CCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLL--GTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~--g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
||++|+.|++|||+|+|+.++... +++.+|++||..+++++|||++++.+++++++.|++||+.|+++|||||||+||
T Consensus 83 gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 83 ALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred HHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 999999999999999999998743 667899999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCC
Q 040733 228 VDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~ 305 (643)
.|++.+++..........+.........++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|++
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~ 242 (554)
T TIGR03254 163 AAVLGQTMEAEKAKKTLVKVVDPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSM 242 (554)
T ss_pred HHHhhccccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHHCCCEEEcCC
Confidence 99998876422110000000000001235788999999999999999999999997 6789999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcc-ccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKL-EDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 306 gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~-~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
|||+||++||+++|. ..++++++||+||++|++++++.+..+ ..|.+++++||||+|+.+++++++.++.|.
T Consensus 243 gkg~~p~~hp~~~g~-------~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~ 315 (554)
T TIGR03254 243 AKGLLPDTHPQSAAA-------ARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVV 315 (554)
T ss_pred cceeCCCCCchhhhH-------HHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhCCCcCCceEEe
Confidence 999999999999873 346789999999999999988776543 346667899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc----cCCCCCCCHHHHHHHHHhcCCC-CCeEEEeCCC
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY----KTFGEEIPPQYAIQILNELTDD-EETIISTGVG 459 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~L~~~l~~-~d~iv~~d~G 459 (643)
+|++.+|++|++.++.... .....|.+++.+.++++.... .....++++..+++.|++.+++ .|.+++.|.|
T Consensus 316 ~D~~~~l~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~ivv~d~~ 392 (554)
T TIGR03254 316 GDIGSVVQALLSAAKNGGV---KPPADWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVLKDNPDIYLVNEGA 392 (554)
T ss_pred cCHHHHHHHHHHHhhhccc---cchHHHHHHHHHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 9999999999988864211 123568777766554432111 1123579999999999999964 2789999999
Q ss_pred hhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCC
Q 040733 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539 (643)
Q Consensus 460 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~ 539 (643)
++..|+.++++..+|++|+.++++|+|||++|+|||++++. +++||+|+|||||+|++|||+|++||++|+++||+||+
T Consensus 393 ~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala~-~~~vv~i~GDGsf~m~~~EL~Ta~r~~l~v~~vV~NN~ 471 (554)
T TIGR03254 393 NTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVET-GKPVVALEGDSAFGFSGMEVETICRYNLPVCVVIFNNG 471 (554)
T ss_pred hHHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhcC-CCcEEEEEcCchhcccHHHHHHHHHcCCCEEEEEEeCh
Confidence 99999999999999999999999999999999999999995 89999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 540 YLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 540 ~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
+|. +..|...++....... ....+||.++|++||+++++|++.+||+++|+++++.++|+||||++++++.
T Consensus 472 ~~~--~~~~~~~~~~~~~~~~-------~~~~~df~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIev~id~~~~ 542 (554)
T TIGR03254 472 GIY--RGDDVNVVGADPAPTV-------LVHGARYDKMMKAFGGVGYNVTTPDELKAALNEALASGKPTLINAVIDPSAG 542 (554)
T ss_pred hhh--hhhhhhhcCCCCCccc-------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEECCCcC
Confidence 862 2222222221111111 1246899999999999999999999999999999999999999999997753
No 42
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=100.00 E-value=1.1e-96 Score=833.24 Aligned_cols=531 Identities=24% Similarity=0.347 Sum_probs=451.2
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+.++++++|++.|+++||++|||+||+.++++++++.+.+|++|.+|||++|+|||+||+|+||+||||++|+|||++|+
T Consensus 8 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 87 (569)
T PRK09259 8 QLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNG 87 (569)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhCCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 45799999999999999999999999999999999976669999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccc--cCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKL--LGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~--~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
++||++|+.+++|||+|+|+.++.. .+++.+|++||.++++++|||++++.+++++++.+++||+.|.++|||||||+
T Consensus 88 l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 167 (569)
T PRK09259 88 LTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLD 167 (569)
T ss_pred HHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEE
Confidence 9999999999999999999998764 35678999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 226 IPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 226 iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
||.|++.+++..........+.........++++.+++++++|.+||||+|++|.|+. ++.+++.+|||++|+||++|
T Consensus 168 iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt 247 (569)
T PRK09259 168 LPAKVLAQTMDADEALTSLVKVVDPAPAQLPAPEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKTGIPFLPM 247 (569)
T ss_pred eCHHHhhCcccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHHCCCEEec
Confidence 9999998776421000000000000111235788999999999999999999999997 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcc-ccccCCceEEEEcCCcccccCCCCCCee
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKL-EDFATRAKIVHIDIDSNEIGKVKLPDVS 382 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~-~~~~~~~~iI~Id~d~~~i~~~~~~~~~ 382 (643)
++|||+||++||+++|. ..++++++||+||+||++++++.+..+ ..|.+++++||||+|+.+++++++.++.
T Consensus 248 ~~gkg~~~e~hpl~~G~-------~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~~~~~~~~~ 320 (569)
T PRK09259 248 SMAKGLLPDTHPQSAAA-------ARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAP 320 (569)
T ss_pred ccccccCCCCChhhhhH-------HHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhcCCccCcee
Confidence 99999999999999984 346789999999999999987765433 3455678999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc----cCCCCCCCHHHHHHHHHhcC--CCCCeEEEe
Q 040733 383 ICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY----KTFGEEIPPQYAIQILNELT--DDEETIIST 456 (643)
Q Consensus 383 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~L~~~l--~~~d~iv~~ 456 (643)
+.+|++.+|++|++.++... ......|.+++...+.++.... .....++++..+++.|++++ ++ |.+|+.
T Consensus 321 i~~D~~~~L~~L~~~l~~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~-d~iv~~ 396 (569)
T PRK09259 321 VVGDIGSVMQALLAGLKQNT---FKAPAEWLDALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKENP-DIYLVN 396 (569)
T ss_pred EecCHHHHHHHHHHHhhhcc---ccchHHHHHHHHHHHHhChhhhhhhhcCCCCCcCHHHHHHHHHHHhCCCC-CEEEEe
Confidence 99999999999998876421 1123578877766554432111 11235699999999999999 44 888888
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|.|++..|..++++...|++++.++++|+|||++|+|||++++ ++++||+|+|||||+|++|||+|++||++|+++||+
T Consensus 397 ~~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-~~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpi~~vV~ 475 (569)
T PRK09259 397 EGANTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-TGKPVVAIEGDSAFGFSGMEVETICRYNLPVTVVIF 475 (569)
T ss_pred CchHHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc-CCCcEEEEecCccccccHHHHHHHHHcCCCEEEEEE
Confidence 9898888988889999999999999999999999999999999 589999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhc-ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 537 NNQYLGMNVEYEDRYFE-ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~-~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
||++| .+..+...+. .+..... ....+||.++|++||+++++|++.+||+++|+++++.++|+||||.++
T Consensus 476 NN~~~--~~~~~~~~~~~~~~~~~~-------~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIev~id 546 (569)
T PRK09259 476 NNGGI--YRGDDVNLSGAGDPSPTV-------LVHHARYDKMMEAFGGVGYNVTTPDELRHALTEAIASGKPTLINVVID 546 (569)
T ss_pred eChhH--HHHHHHHhhcCCCccccc-------cCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 99975 2222222222 1211111 124689999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 040733 616 YQEH 619 (643)
Q Consensus 616 ~~~~ 619 (643)
++++
T Consensus 547 ~~~~ 550 (569)
T PRK09259 547 PAAG 550 (569)
T ss_pred CCCC
Confidence 8764
No 43
>PRK08266 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-95 Score=822.22 Aligned_cols=522 Identities=33% Similarity=0.476 Sum_probs=455.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC--CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS--NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
.++++++|++.|+++||++|||+||+++++|+++|.+. +|++|.++||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N 82 (542)
T PRK08266 3 TMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLN 82 (542)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH
Confidence 36999999999999999999999999999999999875 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCC--CCc-cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEE
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDA--FQE-IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVL 223 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~--~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~ 223 (643)
+++||++|+.+++|||+|+||++....+++. +|+ .||.++++++|||++++.+++++++.+++|++.|+++++||||
T Consensus 83 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~ 162 (542)
T PRK08266 83 AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVA 162 (542)
T ss_pred HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 9999999999999999999999988877754 566 4999999999999999999999999999999999999999999
Q ss_pred EEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeec
Q 040733 224 IDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 224 i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt 303 (643)
|+||.|++.++++.... + .. .......++.+.+++++++|.+||||+|++|+|+.++.+++.+|+|++|+||++|
T Consensus 163 l~iP~dv~~~~~~~~~~-~-~~---~~~~~~~~~~~~i~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~~g~pv~tt 237 (542)
T PRK08266 163 LEMPWDVFGQRAPVAAA-P-PL---RPAPPPAPDPDAIAAAAALIAAAKNPMIFVGGGAAGAGEEIRELAEMLQAPVVAF 237 (542)
T ss_pred EEeCHhHhhCccccccc-c-cc---cCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCChhhHHHHHHHHHHHHCCCEEEe
Confidence 99999998876532110 0 11 1011123678889999999999999999999998788899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
++|||.||++||+++|.. .++++++++|+||+||+++++. +..|..+.++.++||||+|+.++++ +..++.|
T Consensus 238 ~~~kg~~~~~hp~~~g~~------~~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~i 309 (542)
T PRK08266 238 RSGRGIVSDRHPLGLNFA------AAYELWPQTDVVIGIGSRLELP-TFRWPWRPDGLKVIRIDIDPTEMRR-LKPDVAI 309 (542)
T ss_pred ccccccCCCCCccccCCH------HHHHHHHhCCEEEEeCCCcCcc-cccccccCCCCcEEEEECCHHHhCC-cCCCceE
Confidence 999999999999998753 4577899999999999999877 4344434456789999999999999 8899999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHH-HHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQ-YAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++|++.+|++|++.+.... .....|.+++...+..+... ...+++. .+++.|++.+++ |.+++.|+|++.
T Consensus 310 ~~D~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~lp~-d~ivv~d~g~~~ 380 (542)
T PRK08266 310 VADAKAGTAALLDALSKAG----SKRPSRRAELRELKAAARQR----IQAVQPQASYLRAIREALPD-DGIFVDELSQVG 380 (542)
T ss_pred ecCHHHHHHHHHHhhhhcc----cCchHHHHHHHHHHHhhhhc----cccCCHHHHHHHHHHHhcCC-CcEEEeCCcHHH
Confidence 9999999999998876421 11235776666555433211 1236775 479999999999 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|...+++...+++|+.++++|+|||++|+|+|+++++|+++||+|+|||||+|++|||+|+++|++|+++||+||++|+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~~~~eL~ta~~~~lpv~ivv~NN~~y~ 460 (542)
T PRK08266 381 FASWFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTVVFNNNAYG 460 (542)
T ss_pred HHHHHhcccCCCCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCcch
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
++++.|+..|+.+..+.. ...+||.++|++||+++++|++.+||+++|+++++.++|+||||.+++++..
T Consensus 461 ~~~~~~~~~~~~~~~~~~--------~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 461 NVRRDQKRRFGGRVVASD--------LVNPDFVKLAESFGVAAFRVDSPEELRAALEAALAHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred HHHHHHHHhcCCCcccCC--------CCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCcEEEEEEecCCCCc
Confidence 999888765644332221 2458999999999999999999999999999999999999999999887654
No 44
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=6.3e-96 Score=829.05 Aligned_cols=538 Identities=28% Similarity=0.425 Sum_probs=456.8
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
..++++++|++.|+++||++|||+|+.. .+++++.+.+|++|.+|||++|+|||+||||+||+|+||++|+|||++|+
T Consensus 12 ~~~~~a~~i~~~L~~~GV~~vFG~~~~~--~~~~~~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~ 89 (578)
T PRK06112 12 LNGTVAHAIARALKRHGVEQIFGQSLPS--ALFLAAEAIGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGPAATLL 89 (578)
T ss_pred cCcCHHHHHHHHHHHCCCCEEeecccch--HhHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHH
Confidence 4579999999999999999999998653 35567765569999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++||.+++|||+|+|+.+....+++.+|++||.++++++|||++++.+++++++.+++||+.|+++++|||||+||
T Consensus 90 ~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (578)
T PRK06112 90 VAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLP 169 (578)
T ss_pred HHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 228 VDVQLELAVPNWN-QPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 228 ~Dv~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
.|++.+++..... .+..++.+. ..+..+++..+++++++|++||||+||+|+|+. ++.+++.+|+|++|+||++|+
T Consensus 170 ~Dv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~~t~ 248 (578)
T PRK06112 170 ADLLTAAAAAPAAPRSNSLGHFP-LDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLPVATTN 248 (578)
T ss_pred HhHhhCccccccCcccccccCCC-CCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEcc
Confidence 9999877632110 000111111 111235778899999999999999999999986 678999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCc-----HHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCC
Q 040733 305 MGLGLFPCTDELCLRMVGMFGT-----VYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLP 379 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~-----~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~ 379 (643)
+|||.||++||+++|++|..+. ..++++++++|+||+||++++++.+..|..+.+++++||||+|+.++++++.
T Consensus 249 ~~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~- 327 (578)
T PRK06112 249 MGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSWSLYPEQAQYIHIDVDGEEVGRNYE- 327 (578)
T ss_pred cccccCCCCCccccccccccCCCccchHHHHHHHHhCCEEEEECCCCCccccccccccCCCCeEEEEECChHHhCcccc-
Confidence 9999999999999999876432 3677889999999999999998887766656667899999999999999876
Q ss_pred CeeEecCHHHHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCC---c-ccCCCCCCCHHHHHHHHHhcCCCCCeEE
Q 040733 380 DVSICADAKLVFNRMNMILESKGVGF-MFDFSAWREELHEQKKKYPF---S-YKTFGEEIPPQYAIQILNELTDDEETII 454 (643)
Q Consensus 380 ~~~i~~D~~~~L~~L~~~l~~~~~~~-~~~~~~w~~~~~~~~~~~~~---~-~~~~~~~i~~~~~~~~L~~~l~~~d~iv 454 (643)
++.|++|++.+|++|++.+....... ......|.+.+.+.+..+.. . ......++++.++++.|++.+++ +.++
T Consensus 328 ~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~l~~-~~iv 406 (578)
T PRK06112 328 ALRLVGDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHREDSAPVALSDASPIRPERIMAELQAVLTG-DTIV 406 (578)
T ss_pred ceEEEeCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhhhhhhhhhcCCCCCcCHHHHHHHHHHhCCC-CCEE
Confidence 69999999999999998875432110 11223455444332222110 0 01123469999999999999999 9999
Q ss_pred EeCCChhHHHHHHhccccCCC-eEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEE
Q 040733 455 STGVGQHQMWAIQFYMYKRAR-QLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKI 533 (643)
Q Consensus 455 ~~d~G~~~~~~~~~~~~~~p~-~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~i 533 (643)
+.|+|++..|..+++....+. +|+++.++|+||+++|+|+|+++++|+++||+|+|||||+|+++||+|+++||+|+++
T Consensus 407 v~d~g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~~ 486 (578)
T PRK06112 407 VADASYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAELETARRMGVPVTI 486 (578)
T ss_pred EEcccHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcchHHHhHHHHHHHHHHhCCCeEE
Confidence 999999999999999876665 6899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEE
Q 040733 534 LLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVM 613 (643)
Q Consensus 534 vV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~ 613 (643)
||+||++||++++.|...|+...... ....+||.++|++||+++++|++.+||+++|+++++.+||.||||+
T Consensus 487 vv~NN~~~g~~~~~~~~~~~~~~~~~--------~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIev~ 558 (578)
T PRK06112 487 VVLNNGILGFQKHAETVKFGTHTDAC--------HFAAVDHAAIARACGCDGVRVEDPAELAQALAAAMAAPGPTLIEVI 558 (578)
T ss_pred EEEeCCccCCEEeccccccCCccccC--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999999998766654443322111 1246899999999999999999999999999999999999999999
Q ss_pred eCCCC
Q 040733 614 VSYQE 618 (643)
Q Consensus 614 v~~~~ 618 (643)
+++++
T Consensus 559 ~~~~~ 563 (578)
T PRK06112 559 TDPSA 563 (578)
T ss_pred cCccc
Confidence 98765
No 45
>PLN02573 pyruvate decarboxylase
Probab=100.00 E-value=2.4e-97 Score=836.51 Aligned_cols=534 Identities=19% Similarity=0.256 Sum_probs=445.7
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
++.++++|+|++.|+++||+||||+||+.+++|+++|.+. +|++|.||||++|+||||||||+|| +|||++|+|||++
T Consensus 13 ~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~ 91 (578)
T PLN02573 13 SSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARG-VGACVVTFTVGGL 91 (578)
T ss_pred cccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhC-CCeEEEecCccHH
Confidence 3457899999999999999999999999999999999765 5999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCc--------cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE--------IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~--------~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
|+++||++||.|++|||+|+|+.++...+++.+|+ .++.++|+++|||++++.+++++++.+++||+.|+++
T Consensus 92 n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~ 171 (578)
T PLN02573 92 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAISTALKE 171 (578)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988777766322 1346899999999999999999999999999999998
Q ss_pred CCCeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHH
Q 040733 218 RPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGL 295 (643)
Q Consensus 218 ~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~ 295 (643)
| |||||+||.|++.+++.+....+.............+.+..+++++++|++||||+|++|+|+. ++.+++++|||+
T Consensus 172 ~-gPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~ 250 (578)
T PLN02573 172 S-KPVYISVSCNLAAIPHPTFSREPVPFFLTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKACKAFVELADA 250 (578)
T ss_pred C-CCEEEEeehhhhcCccccccCCCCCcccccCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccchHHHHHHHHHH
Confidence 6 9999999999988664221000111100000000113567899999999999999999999996 678999999999
Q ss_pred hCCceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCccccc
Q 040733 296 TGIPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIG 374 (643)
Q Consensus 296 lg~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~ 374 (643)
+|+||+||++|||+||++||+++|++ |..++..+++++++||+||+||++++++.+..+..+.+++++||||+|+.+++
T Consensus 251 ~~~PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~ 330 (578)
T PLN02573 251 SGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVTIG 330 (578)
T ss_pred hCCCEEECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEECCccCCcccccccccCCCCcEEEEeCCEEEEC
Confidence 99999999999999999999999998 88899999999999999999999999888766655556788999999999999
Q ss_pred CCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEE
Q 040733 375 KVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETII 454 (643)
Q Consensus 375 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv 454 (643)
+++ ++.+. |++.+|++|++.+..+. ..+..|.. ....+.+.. ......++++.++++.|++.+++ |.||
T Consensus 331 ~~~--~~~~~-~~~~~l~~L~~~l~~~~----~~~~~~~~-~~~~~~~~~--~~~~~~~i~~~~~~~~l~~~l~~-d~ii 399 (578)
T PLN02573 331 NGP--AFGCV-LMKDFLEALAKRVKKNT----TAYENYKR-IFVPEGEPL--KSEPGEPLRVNVLFKHIQKMLSG-DTAV 399 (578)
T ss_pred Ccc--eECCc-CHHHHHHHHHHHhhccc----cccccccc-cccCcccCC--CCCCCCccCHHHHHHHHHHhcCC-CCEE
Confidence 864 44444 89999999998875421 11122321 110011100 01123469999999999999998 9999
Q ss_pred EeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEE
Q 040733 455 STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKIL 534 (643)
Q Consensus 455 ~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 534 (643)
+.|+|++ +|..+++..+++..|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++|
T Consensus 400 v~D~G~~-~~~~~~~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~v 478 (578)
T PLN02573 400 IAETGDS-WFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIRCGQKSIIF 478 (578)
T ss_pred EEecccc-hhhHHhccCCCCCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHHHHHHHHHHcCCCCEEE
Confidence 9999997 555677887778889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCC-----CCEEEeCChhHHHHHHHHHHh--CCCc
Q 040733 535 LINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACG-----IPAARVTKKKDVRAAIQLMLE--TPGP 607 (643)
Q Consensus 535 V~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G-----~~~~~V~~~~eL~~al~~al~--~~gp 607 (643)
|+||++||++++.+.. . ++ ....+||.++|++|| +++.+|++.+||+++|+++++ .++|
T Consensus 479 V~NN~~yg~~~~~~~~----~-----~~-----~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p 544 (578)
T PLN02573 479 LINNGGYTIEVEIHDG----P-----YN-----VIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCL 544 (578)
T ss_pred EEeCCceeEEEeeccc----C-----cc-----ccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCc
Confidence 9999999998754311 0 10 124589999999996 899999999999999999984 7999
Q ss_pred EEEEEEeCCCCCcccccCCCc
Q 040733 608 YLLDVMVSYQEHVVPMIPYDK 628 (643)
Q Consensus 608 ~lIeV~v~~~~~~~p~~~~~~ 628 (643)
+||||++++++...|+.+...
T Consensus 545 ~lieV~v~~~~~~~~~~~~~~ 565 (578)
T PLN02573 545 CFIEVIVHKDDTSKELLEWGS 565 (578)
T ss_pred EEEEEEcCcCCCCHHHHHHHH
Confidence 999999998887776665443
No 46
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=9.5e-95 Score=816.17 Aligned_cols=532 Identities=23% Similarity=0.260 Sum_probs=444.9
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC------CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccc
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS------NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSG 141 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~------~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~G 141 (643)
.+++++|+|++.|+++||++|||+||+++++|++++.+. +|++|.||||++|+||||||+|+|||||||++|+|
T Consensus 5 ~~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~G 84 (569)
T PRK08327 5 TMYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVD 84 (569)
T ss_pred ccccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 357899999999999999999999999999999999753 38999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--------CCCCc-cCHHHHhhccceeeeEeCCcCcHHHHHHHHHH
Q 040733 142 PGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--------DAFQE-IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFF 212 (643)
Q Consensus 142 pG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--------~~~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~ 212 (643)
||++|+++||++|+.|++|||+|+|+.++...++ +.+|+ +|+..+++++|||++++.+++++.+.+++|++
T Consensus 85 PG~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~~ 164 (569)
T PRK08327 85 VGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQ 164 (569)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998776543 46899 69999999999999999999999999999999
Q ss_pred HhhcCCCCeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHH
Q 040733 213 IATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELR 290 (643)
Q Consensus 213 ~A~s~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~ 290 (643)
.|.++|+|||||+||.|++.+++...... .+.......+.++++.+++++++|++||||+|++|+|+. ++.+++.
T Consensus 165 ~a~~~~~GPV~i~iP~Dv~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~ 241 (569)
T PRK08327 165 IAMSEPKGPVYLTLPREVLAEEVPEVKAD---AGRQMAPAPPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFASLR 241 (569)
T ss_pred HHhcCCCCCEEEECcHHHHhhhccccccC---ccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEecccCCcccHHHHH
Confidence 99999999999999999998876431100 001111112236788999999999999999999999997 6789999
Q ss_pred HHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCc
Q 040733 291 KFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDS 370 (643)
Q Consensus 291 ~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~ 370 (643)
+|||++++||++|++|||.||++||+++|.+ ++++++++||||++|+++++..+.. .+.+++++||||+|+
T Consensus 242 ~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~-------~~~~~~~aDlvl~lG~~l~~~~~~~--~~~~~~~vi~Id~d~ 312 (569)
T PRK08327 242 RLAEELAIPVVEYAGEVVNYPSDHPLHLGPD-------PRADLAEADLVLVVDSDVPWIPKKI--RPDADARVIQIDVDP 312 (569)
T ss_pred HHHHHhCCCEEecCCCceeCCCCCccccccc-------cchhhhhCCEEEEeCCCCCCccccc--cCCCCCeEEEEeCCh
Confidence 9999999999999999999999999999864 5778899999999999987654432 245567999999999
Q ss_pred cccc---CCCCCCeeEecCHHHHHHHHHHHHhhcCCCCC----CChhHHHHHHHHHHHhCCCc--ccCCCCCCCHHHHHH
Q 040733 371 NEIG---KVKLPDVSICADAKLVFNRMNMILESKGVGFM----FDFSAWREELHEQKKKYPFS--YKTFGEEIPPQYAIQ 441 (643)
Q Consensus 371 ~~i~---~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~----~~~~~w~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~ 441 (643)
.+++ ++++.++.|++|++.+|++|++.++....... .....|.++..+.+...... ....++++++.++++
T Consensus 313 ~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 392 (569)
T PRK08327 313 LKSRIPLWGFPCDLCIQADTSTALDQLEERLKSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPAYLSY 392 (569)
T ss_pred hhhcccccCcceeEEEecCHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHHhhhhhhhhhhccCCCCCcCHHHHHH
Confidence 9987 47888999999999999999988864211100 01224655544332221100 011235799999999
Q ss_pred HHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHH-
Q 040733 442 ILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQE- 520 (643)
Q Consensus 442 ~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~e- 520 (643)
.|++.+++ +.+|+.+. .|..++++.+++.+|++++++|+|||++|+|+|+++++|+++||+|+|||||+|+.+|
T Consensus 393 ~l~~~l~~-~~~vv~~~----~~~~~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~ 467 (569)
T PRK08327 393 CLGEVADE-YDAIVTEY----PFVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEA 467 (569)
T ss_pred HHHHhcCc-cceEEecc----HHHHHhcCccCCCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcceeecCcHH
Confidence 99999998 77777554 4888999999999999999999999999999999999999999999999999999876
Q ss_pred -HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHH
Q 040733 521 -LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQ 599 (643)
Q Consensus 521 -L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~ 599 (643)
|+|++|+|+|+++||+||++||++++.|...|...........+.......+||+++|++||+++++|++++||+++++
T Consensus 468 ~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~ 547 (569)
T PRK08327 468 AHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVEDPEELKGALR 547 (569)
T ss_pred HHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeCCHHHHHHHHH
Confidence 8999999999999999999999999988776653211000000011112568999999999999999999999999999
Q ss_pred HHHhC----CCcEEEEEEeCC
Q 040733 600 LMLET----PGPYLLDVMVSY 616 (643)
Q Consensus 600 ~al~~----~gp~lIeV~v~~ 616 (643)
++++. +||+||||++++
T Consensus 548 ~a~~~~~~~~gp~liev~v~~ 568 (569)
T PRK08327 548 RALAAVRKGRRSAVLDVIVDR 568 (569)
T ss_pred HHHHHHhcCCCcEEEEEEccC
Confidence 99875 789999999964
No 47
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=100.00 E-value=7.5e-94 Score=801.91 Aligned_cols=514 Identities=21% Similarity=0.266 Sum_probs=432.6
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
+.+|+|++.|+++||++|||+||+++++|+++|.+.+ |++|.+|||++|+|||+||||+||||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~ 80 (535)
T TIGR03394 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN 80 (535)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence 4789999999999999999999999999999998877 999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCc-----c-CHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEE
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQE-----I-PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVL 223 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~-----~-d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~ 223 (643)
||++||.+++|||+|+|+.++...+++.+|+ + ||.++++++|||++++.+++++++.+++|++.|.+ ++||||
T Consensus 81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~ 159 (535)
T TIGR03394 81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-LSRPVY 159 (535)
T ss_pred HHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-CCCCEE
Confidence 9999999999999999999998888887543 6 48899999999999999999999999999999998 559999
Q ss_pred EEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCcee
Q 040733 224 IDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 224 i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~ 301 (643)
|+||.|++.+++.+. ...+... . ...+.++.+++++++|++||||+|++|+|+. ++.+++++|||++|+||+
T Consensus 160 i~iP~Dv~~~~~~~~----~~~~~~~-~-~~~~~~~~v~~~~~~l~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~ 233 (535)
T TIGR03394 160 LEIPRDMVNAEVEPV----PDDPAWP-V-DRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPVV 233 (535)
T ss_pred EEechhhccCccCCC----CCCCCCC-C-ChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccCcHHHHHHHHHHhCCCEE
Confidence 999999998776421 0111111 0 0112456789999999999999999999997 678999999999999999
Q ss_pred ecCCCCCCCCCCCCCcccc-cCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCC
Q 040733 302 CTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPD 380 (643)
Q Consensus 302 tt~~gkg~~~~~hpl~lG~-~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~ 380 (643)
+|++|||+||++||+++|+ .|..++..+++++++|||||+||++++++.+.....+.++.++||||+|+.+++++++.+
T Consensus 234 tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~~~~~~~ 313 (535)
T TIGR03394 234 TTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDTNFAVSQRKIDLRRTIHAFDRAVTLGYHVYAD 313 (535)
T ss_pred EccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCcccccccccccccCCCCcEEEEeCCEEEECCeeECC
Confidence 9999999999999999995 688899999999999999999999998875533333445679999999999999999999
Q ss_pred eeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCC-CeEEEeCCC
Q 040733 381 VSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDE-ETIISTGVG 459 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~-d~iv~~d~G 459 (643)
+.+ +|+..+|++|++.+.... ...|.+.... ..........+++|.++++.|++.++++ +.+++.|+|
T Consensus 314 ~~i-~d~~~~L~~l~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G 382 (535)
T TIGR03394 314 IPL-AGLVDALLALLCGLPPSD------RTTRGKGPHA----YPRGLQADAEPIAPMDIARAVNDRFARHGQMPLAADIG 382 (535)
T ss_pred ccH-HHHHHHHHHhhhcccccc------cccccccccc----cccccCCCCCCcCHHHHHHHHHHHhCCCCCEEEEEccC
Confidence 998 889888888876542110 0112111111 1110011234699999999999999862 257889999
Q ss_pred hhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCC
Q 040733 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539 (643)
Q Consensus 460 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~ 539 (643)
++..|+.. + ++++|+.++++|+|||++|+|||+++|.| +++|+|+|||||+|++|||+|++|||+|+++||+||+
T Consensus 383 ~~~~~~~~-~---~~~~~~~~~~~g~mG~glpaaiGa~lA~~-~r~v~i~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~ 457 (535)
T TIGR03394 383 DCLFTAMD-M---DDAGLMAPGYYAGMGFGVPAGIGAQCTSG-KRILTLVGDGAFQMTGWELGNCRRLGIDPIVILFNNA 457 (535)
T ss_pred HHHHHHHh-c---CCCcEECcCccchhhhHHHHHHHHHhCCC-CCeEEEEeChHHHhHHHHHHHHHHcCCCcEEEEEECC
Confidence 98766644 3 26789999999999999999999999986 4568899999999999999999999999999999999
Q ss_pred CchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC-CCcEEEEEEeCCCC
Q 040733 540 YLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET-PGPYLLDVMVSYQE 618 (643)
Q Consensus 540 ~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~-~gp~lIeV~v~~~~ 618 (643)
+|+|++++|... .... ...+||+++|++||+++++|++.+||+++|+++++. ++|.||||++++.+
T Consensus 458 ~y~~~~~~~~~~-----~~~~--------~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lIev~i~~~~ 524 (535)
T TIGR03394 458 SWEMLRVFQPES-----AFND--------LDDWRFADMAAGMGGDGVRVRTRAELAAALDKAFATRGRFQLIEAMLPRGV 524 (535)
T ss_pred ccceeehhccCC-----Cccc--------CCCCCHHHHHHHcCCCceEeCCHHHHHHHHHHHHhcCCCeEEEEEECCccc
Confidence 999998876321 1111 235899999999999999999999999999999975 45899999999877
Q ss_pred Cc
Q 040733 619 HV 620 (643)
Q Consensus 619 ~~ 620 (643)
..
T Consensus 525 ~~ 526 (535)
T TIGR03394 525 LS 526 (535)
T ss_pred CC
Confidence 43
No 48
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=100.00 E-value=2.6e-94 Score=808.80 Aligned_cols=511 Identities=19% Similarity=0.282 Sum_probs=432.6
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
+|++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.+|||++|+||||||+|+|| ++||++|+|||++|++
T Consensus 1 ~t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~ 79 (539)
T TIGR03393 1 YTVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKG-AAALLTTFGVGELSAI 79 (539)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHh
Confidence 3799999999999999999999999999999999765 5999999999999999999999999 7999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCccc----------ccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCC
Q 040733 149 TGLMDAYSDSIPILAITGQVSQK----------LLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGR 218 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~----------~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~ 218 (643)
+||++||.|++|||+|+||.++. ..+.+.||+. .++++++|||++.+ +++++++.+++|++.|.+++
T Consensus 80 ~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~~ 156 (539)
T TIGR03393 80 NGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHF--YRMAAEVTVAQAVL-TEQNATAEIDRVITTALRER 156 (539)
T ss_pred hHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHH--HHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999874 3344556753 68999999998866 78999999999999999875
Q ss_pred CCeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHh
Q 040733 219 PGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLT 296 (643)
Q Consensus 219 ~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~l 296 (643)
|||||+||.|++.+++.... .....+....+...+++.+++++++|++||||+|++|+|+. ++.+++.+|+|++
T Consensus 157 -gPv~l~iP~Dv~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~ 232 (539)
T TIGR03393 157 -RPGYLMLPVDVAAKAVTPPV---NPLVTHKPAHADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEV 232 (539)
T ss_pred -CCEEEEecccccCCccCCCC---cccCcCCCCCChHHHHHHHHHHHHHHHhCCCCEEEeChhhcccChHHHHHHHHHHh
Confidence 99999999999988764211 01111110000001124589999999999999999999996 6789999999999
Q ss_pred CCceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCcccc-ccCCceEEEEcCCccccc
Q 040733 297 GIPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSNEIG 374 (643)
Q Consensus 297 g~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~iI~Id~d~~~i~ 374 (643)
++||++|++|||+||++||+++|++ |..+...+++++++||+||++|++++++.+..+.. +. ..++||||+|+.+++
T Consensus 233 ~~pv~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~-~~~~I~id~~~~~~~ 311 (539)
T TIGR03393 233 PMPHATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAGFTHQLT-PEQTIDVQPHAARVG 311 (539)
T ss_pred CCCEEECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCcccccccceeeccCC-cccEEEEcCCeEEEC
Confidence 9999999999999999999999998 55566788999999999999999999888766542 43 468999999999999
Q ss_pred CCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEE
Q 040733 375 KVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETII 454 (643)
Q Consensus 375 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv 454 (643)
+++..++.+ +|+..+|++|++.+.. .|.+. ...+...+ .....++++..+++.|++.+++ +.+|
T Consensus 312 ~~~~~~~~i-~D~~~~l~~l~~~l~~----------~~~~~-~~~~~~~~---~~~~~~l~~~~~~~~l~~~l~~-~~ii 375 (539)
T TIGR03393 312 NVWFTGIPM-NDAIETLVELCEHAGL----------MWSSS-GAIPFPQP---DESRSALSQENFWQTLQTFLRP-GDII 375 (539)
T ss_pred ceEeCCcCH-HHHHHHHHHHhhhccc----------ccccc-cccCcCCC---CCCCCccCHHHHHHHHHHhcCC-CCEE
Confidence 999889888 9999999999876531 23211 00010111 1122469999999999999998 9999
Q ss_pred EeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEE
Q 040733 455 STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKIL 534 (643)
Q Consensus 455 ~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 534 (643)
+.|+|++. |..++++.+.+++++.++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++||++|+++|
T Consensus 376 v~d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~~~~lpi~~v 454 (539)
T TIGR03393 376 LADQGTSA-FGAADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLRDKQHPIIL 454 (539)
T ss_pred EEccCchh-hhhhhccCCCCCeEEechhhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHHhHHHHHHHHHHcCCCCEEE
Confidence 99999986 78889998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCC----EEEeCChhHHHHHHHHHHhCCCcEEE
Q 040733 535 LINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP----AARVTKKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 535 V~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~----~~~V~~~~eL~~al~~al~~~gp~lI 610 (643)
|+||++|+++++++. ++.. .. ....+||.++|++||++ +++|++.+||+++|+++++.++|+||
T Consensus 455 V~NN~~y~~i~~~~~--~~~~--~~--------~~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~p~li 522 (539)
T TIGR03393 455 VLNNEGYTVERAIHG--AEQR--YN--------DIALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEKVAAHERLSLI 522 (539)
T ss_pred EEeCCceEEEEeecC--CCCC--cC--------cCCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHHHhccCCeEEE
Confidence 999999999875431 1111 11 12458999999999996 89999999999999999999999999
Q ss_pred EEEeCCCC
Q 040733 611 DVMVSYQE 618 (643)
Q Consensus 611 eV~v~~~~ 618 (643)
||++++++
T Consensus 523 ev~i~~~~ 530 (539)
T TIGR03393 523 EVVLPKAD 530 (539)
T ss_pred EEEcCccc
Confidence 99998754
No 49
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=6.6e-93 Score=727.85 Aligned_cols=542 Identities=29% Similarity=0.413 Sum_probs=463.9
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
.+.++|++.+++.|+.+||+++||+-|.++.+|..+..+.||+||.+|||++|+|||++|+++|||||||++++|||.+|
T Consensus 11 ~~~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqalGIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~h 90 (571)
T KOG1185|consen 11 ASSRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQALGIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVVSGPGLTH 90 (571)
T ss_pred cccccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHHcCCeEeecccHHHHHHHHHHhhhhcCCCeEEEEecCChHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++|++||+.+.+|||+|.|..++...++++|||+||+++++|+||++.++.++++|+..+++|++.|++|+|||||+++
T Consensus 91 al~gv~NA~~n~wPll~IgGsa~~~~~~rGafQe~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~ 170 (571)
T KOG1185|consen 91 ALAGVANAQMNCWPLLLIGGSASTLLENRGAFQELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDL 170 (571)
T ss_pred HHHHhhhhhhccCcEEEEecccchhhhcccccccccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcCCCCceEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceee
Q 040733 227 PVDVQLELAVPNWNQPC--KLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~t 302 (643)
|.|+.......+..... ..+....+.-+.|++..+++++++|++||||+|++|.|+. .+.++|++|.|.+|+|++.
T Consensus 171 P~d~v~~~~~~e~~~~~~~p~~~~p~P~i~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~~Ve~~glPflp 250 (571)
T KOG1185|consen 171 PADVVLPSKMVEKEIDVSEPQPPIPLPPIPGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRKFVETTGLPFLP 250 (571)
T ss_pred ccceeeeecccccccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHHHHHhcCCCccc
Confidence 99954332211100010 0111110101347889999999999999999999999997 4568999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCc-cccccCCceEEEEcCCcccccCC-CCCC
Q 040733 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSK-LEDFATRAKIVHIDIDSNEIGKV-KLPD 380 (643)
Q Consensus 303 t~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~-~~~~~~~~~iI~Id~d~~~i~~~-~~~~ 380 (643)
|+||||++|++||++++. .-..+|++||+||++|+|++++...+ -..|.++.|+|+||+.+++++.| ..++
T Consensus 251 tpMgKGll~d~hPl~v~~-------aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n~~k~~ 323 (571)
T KOG1185|consen 251 TPMGKGLLPDNHPLNVSS-------ARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNNFVKPD 323 (571)
T ss_pred CcccccCCCCCCchhhhH-------HHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcccCCCC
Confidence 999999999999999753 23468999999999999999988744 34688899999999999999999 7899
Q ss_pred eeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC----cccCCCCCCCHHHHHHHHHhcCCCCCeEEEe
Q 040733 381 VSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF----SYKTFGEEIPPQYAIQILNELTDDEETIIST 456 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~ 456 (643)
+.|++|++.++.+|.+.|...+... ....+|.+++++..++-.. ....+..++++..+++.+++.++..|+|+++
T Consensus 324 v~i~gDig~~~~~L~e~l~~~~~~~-~~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre~L~~~d~ilVs 402 (571)
T KOG1185|consen 324 VAIQGDIGLFVLQLVEELQDQPWTW-GPSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRELLPNDDTILVS 402 (571)
T ss_pred ceeeecHHHHHHHHHHHhcCCCccc-CCchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHHhcCCCCcEEEe
Confidence 9999999999999999988754321 1223798888765332211 1123456799999999999999943999999
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|.+++...+...+..+.|++++..+.||+||.|++.|||+|+++|+++|+|+.||++|.|+.+|++|++||+||+++||+
T Consensus 403 EGantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME~ET~vR~~Lpvv~vV~ 482 (571)
T KOG1185|consen 403 EGANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAMELETFVRYKLPVVIVVG 482 (571)
T ss_pred cCCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhhHHHHHHhcCCeEEEEe
Confidence 99999888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC-chhhHH-HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-CCCcEEEEEE
Q 040733 537 NNQY-LGMNVE-YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-TPGPYLLDVM 613 (643)
Q Consensus 537 NN~~-~g~~~~-~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-~~gp~lIeV~ 613 (643)
||+| ||.-.. |+.-..+.. ....|......+.+|.+++++||.+++.|++++||..+++++.. +++|+||+|.
T Consensus 483 NN~Giyg~d~~~~~~I~e~~~----~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvINVl 558 (571)
T KOG1185|consen 483 NNNGIYGLDDDGWKQISEQDP----TLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVINVL 558 (571)
T ss_pred cCCcccccCcccHHHHhhcCc----ccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 7754 665432 222211111 12234445567889999999999999999999999999999996 5599999999
Q ss_pred eCCCCCc
Q 040733 614 VSYQEHV 620 (643)
Q Consensus 614 v~~~~~~ 620 (643)
+++.+..
T Consensus 559 I~p~~~r 565 (571)
T KOG1185|consen 559 IGPTAFR 565 (571)
T ss_pred ecccccc
Confidence 9987643
No 50
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=100.00 E-value=2.2e-92 Score=792.21 Aligned_cols=515 Identities=24% Similarity=0.347 Sum_probs=443.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
+++++++|++.|+++||++|||+||+++++|+++|.+ +|++|.+|||++|+|||+||||+||+|+||++|+|||++|++
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~-~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~ 89 (530)
T PRK07092 11 MTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD-DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAM 89 (530)
T ss_pred cCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh-cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHH
Confidence 4799999999999999999999999999999999964 599999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCc-cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQE-IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
+||++|+.+++|||+|+|+.++...+++.+|+ +||.++++++|||++++.+++++++.+++||+.|+++|+|||||+||
T Consensus 90 ~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (530)
T PRK07092 90 GNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIP 169 (530)
T ss_pred HHHHHHhhcCCCEEEEecCCcccccCccchhcccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 99999999999999999999999888888754 79999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCC
Q 040733 228 VDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~ 305 (643)
.|++.+++.+ . . +... .....++++.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|++
T Consensus 170 ~d~~~~~~~~-~--~---~~~~-~~~~~~~~~~~~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~ 242 (530)
T PRK07092 170 YDDWDQPAEP-L--P---ARTV-SSAVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPM 242 (530)
T ss_pred HHHhhCcccc-c--c---cCCC-CCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcchhhhHHHHHHHHHHHCCcEEEecC
Confidence 9998876532 1 0 0001 111236788899999999999999999999997 5678999999999999998875
Q ss_pred -CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCcccc-CccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 306 -GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT-SKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 306 -gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t-~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
+||.+|++||+++|++|. +....+++++++|+||+||+++.+..+ .....|.++.++||||+|+.++++ ++.++.|
T Consensus 243 ~~kg~~~~~hp~~~G~~g~-~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~i 320 (530)
T PRK07092 243 SGRCSFPEDHPLFAGFLPA-SREKISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAAW-APMGDAI 320 (530)
T ss_pred CCcCcCCCCCccccCcCCc-cHHHHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhcC-CCCCCcc
Confidence 799999999999999874 345667889999999999997544333 222335557789999999999876 4678999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHH
Q 040733 384 CADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQM 463 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~ 463 (643)
.+|++.+|++|++.+..... ..|.. +..... ......++++..+++.|++.+++ +.+++.|+|++..
T Consensus 321 ~~d~~~~l~~L~~~l~~~~~------~~~~~-----~~~~~~-~~~~~~~l~~~~~~~~l~~~l~~-~~ivv~d~g~~~~ 387 (530)
T PRK07092 321 VGDIRLALRDLLALLPPSAR------PAPPA-----RPMPPP-APAPGEPLSVAFVLQTLAALRPA-DAIVVEEAPSTRP 387 (530)
T ss_pred cCCHHHHHHHHHHhhccccc------cchhh-----hhcccc-ccCCCCCcCHHHHHHHHHHhCCC-CeEEEeCCCccHH
Confidence 99999999999988753211 11111 001110 01123569999999999999999 9999999999999
Q ss_pred HHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchh
Q 040733 464 WAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543 (643)
Q Consensus 464 ~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~ 543 (643)
|..++++...+++|+.+. +|+||+++|+|+|++++.|+++||+|+|||+|+|+++||+|++++++|+++||+||++|++
T Consensus 388 ~~~~~~~~~~~~~~~~~~-~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lp~~~vv~NN~~~~~ 466 (530)
T PRK07092 388 AMQEHLPMRRQGSFYTMA-SGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFVILNNGRYGA 466 (530)
T ss_pred HHHHhcCcCCCCceEccC-CCcccchHHHHHHHHHhCCCCeEEEEEeCchHhhhHHHHHHHHHhCCCcEEEEEeChHHHH
Confidence 999999999999998764 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 544 ~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
+++.|+..+..+..+. ....+||.++|++||+++++|++.+||+++|+++++.++|.||||.+|
T Consensus 467 ~~~~~~~~~~~~~~~~--------~~~~~d~~~~a~~~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~~d 530 (530)
T PRK07092 467 LRWFAPVFGVRDVPGL--------DLPGLDFVALARGYGCEAVRVSDAAELADALARALAADGPVLVEVEVA 530 (530)
T ss_pred HHHHHHhhCCCCCCCC--------CCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 9887765433221111 235689999999999999999999999999999999999999999985
No 51
>PRK12474 hypothetical protein; Provisional
Probab=100.00 E-value=4e-92 Score=787.52 Aligned_cols=500 Identities=23% Similarity=0.285 Sum_probs=417.9
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
.+.++++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.+|||++|+||||||||+||||+||++|+|||++
T Consensus 2 ~~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~ 81 (518)
T PRK12474 2 GQTMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLA 81 (518)
T ss_pred CcCccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHh
Confidence 3567999999999999999999999999999999999765 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
|+++||++||.|++|||+|+||.++...+.+.+|+.|+..+++++|||++++.++++++++|++||+.|.++|+|||||+
T Consensus 82 N~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~ 161 (518)
T PRK12474 82 NGLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLI 161 (518)
T ss_pred HhHHHHHHHhhcCCCEEEEeccCchhhcCCCCccccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 226 IPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 226 iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
||.|++.+++.... . .++... ++.++.+.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|
T Consensus 162 iP~Dv~~~~~~~~~-~--~~~~~~---~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t 235 (518)
T PRK12474 162 MPADVAWNEAAYAA-Q--PLRGIG---PAPVAAETVERIAALLRNGKKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCD 235 (518)
T ss_pred echhhhcccccCCc-C--CCCCCC---CCCCCHHHHHHHHHHHHcCCCcEEEECCccchhhHHHHHHHHHHHHCCCEEEe
Confidence 99999877652111 0 111111 1236788999999999999999999999996 57889999999999999975
Q ss_pred ------CCCCCCCCC-CCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCc--ccc-Cccc-cccCCceEEEEcCCccc
Q 040733 304 ------TMGLGLFPC-TDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNE--RMT-SKLE-DFATRAKIVHIDIDSNE 372 (643)
Q Consensus 304 ------~~gkg~~~~-~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~--~~t-~~~~-~~~~~~~iI~Id~d~~~ 372 (643)
++|||.+|+ +||++. ...++++++||+||++|++++. +.+ .++. .+...+++++++..
T Consensus 236 ~~~~~~~~gkg~~~~~~~~~~~--------~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 304 (518)
T PRK12474 236 TFAPRIERGAGRVPIERIPYFH--------EQITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIVYLAQP--- 304 (518)
T ss_pred cCcccccCCCCCCCCcccccch--------HHHHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEEEECCC---
Confidence 469999995 567752 2456789999999999999632 111 1111 23345678888642
Q ss_pred ccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCe
Q 040733 373 IGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEET 452 (643)
Q Consensus 373 i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~ 452 (643)
.+|++.+|++|++.++... .|..+. ..... . ....++++.++++.|++.+++ |.
T Consensus 305 -----------~~d~~~~l~~L~~~l~~~~--------~~~~~~---~~~~~-~--~~~~~i~~~~~~~~l~~~l~~-d~ 358 (518)
T PRK12474 305 -----------DEDLAQALQDLADAVDAPA--------EPAART---PLALP-A--LPKGALNSLGVAQLIAHRTPD-QA 358 (518)
T ss_pred -----------CcCHHHHHHHHHHhccccc--------cccccc---ccccc-C--CCCCCcCHHHHHHHHHHHCCC-Ce
Confidence 1699999999987664311 111100 00110 0 123469999999999999998 99
Q ss_pred EEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeE
Q 040733 453 IISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVK 532 (643)
Q Consensus 453 iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ 532 (643)
||+.|+|++..|..++++..+|++|+.+.+ |+|||++|+|||+++|+|+|+||+|+|||||+|++|||+|++||++|++
T Consensus 359 iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~-gsmG~glpaAiGa~lA~p~r~vv~i~GDG~f~m~~qEL~Ta~r~~lpv~ 437 (518)
T PRK12474 359 IYADEALTSGLFFDMSYDRARPHTHLPLTG-GSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMARENLDVT 437 (518)
T ss_pred EEEECCCcCHHHHHHhhcccCCCCEEccCC-CccCccHHHHHHHHHHCCCCcEEEEEcCchhcchHHHHHHHHHHCCCcE
Confidence 999999999999999999989999997755 9999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCchhhHHHHHHhhcccccc---cccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEE
Q 040733 533 ILLINNQYLGMNVEYEDRYFEANRAN---SFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYL 609 (643)
Q Consensus 533 ivV~NN~~~g~~~~~q~~~~~~~~~~---~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~l 609 (643)
+||+||++|+++++.|...+.+.... .... ...+.+||.++|++||+++++|++++||.++|+++++.++|+|
T Consensus 438 iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~lA~a~G~~~~rv~~~~eL~~al~~a~~~~~p~l 513 (518)
T PRK12474 438 VVIFANRSYAILNGELQRVGAQGAGRNALSMLD----LHNPELNWMKIAEGLGVEASRATTAEEFSAQYAAAMAQRGPRL 513 (518)
T ss_pred EEEEcCCcchHHHHHHHhhcCCCCCcccccccc----CCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHcCCCCEE
Confidence 99999999999987765431110000 0000 0123579999999999999999999999999999999999999
Q ss_pred EEEEe
Q 040733 610 LDVMV 614 (643)
Q Consensus 610 IeV~v 614 (643)
|||++
T Consensus 514 iev~~ 518 (518)
T PRK12474 514 IEAMI 518 (518)
T ss_pred EEEEC
Confidence 99975
No 52
>PRK07586 hypothetical protein; Validated
Probab=100.00 E-value=9.8e-92 Score=785.11 Aligned_cols=498 Identities=24% Similarity=0.300 Sum_probs=417.3
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
|+++|+|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+||||||||+||+|+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 5899999999999999999999999999999999775 599999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+||++||.+++|||+|+||.++...+.+.+|+.||.++++++|||++++.+++++++.|++||+.|+++|+|||||+||.
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCcccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC--
Q 040733 229 DVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT-- 304 (643)
Q Consensus 229 Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~-- 304 (643)
|++.+++... .. ..+. .....++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||+++.
T Consensus 161 Dv~~~~~~~~--~~-~~~~---~~~~~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~ 234 (514)
T PRK07586 161 DVAWSEGGPP--AP-PPPA---PAPAAVDPAAVEAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFP 234 (514)
T ss_pred chhccccccc--cc-cCCC---CCCCCCCHHHHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccc
Confidence 9998765321 10 0111 111236888999999999999999999999997 678899999999999999864
Q ss_pred ----CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccc---cCccccc-cCCceEEEEcCCcccccCC
Q 040733 305 ----MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERM---TSKLEDF-ATRAKIVHIDIDSNEIGKV 376 (643)
Q Consensus 305 ----~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~---t~~~~~~-~~~~~iI~Id~d~~~i~~~ 376 (643)
+|||++|++|+.+.+ ..++++++++||||++|+++.... ......+ ..+.++++++..
T Consensus 235 ~~~~~gkg~~~~~~~~~~~-------~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 300 (514)
T PRK07586 235 ARMERGAGRPAVERLPYFA-------EQALAQLAGVRHLVLVGAKAPVAFFAYPGKPSRLVPEGCEVHTLAGP------- 300 (514)
T ss_pred cccccCCCCCCcccccchH-------HHHHHHHhcCCEEEEECCCCcccccccCCCccccCCCCceEEEECCC-------
Confidence 599999988876543 456778999999999999963211 1111111 123344443211
Q ss_pred CCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEe
Q 040733 377 KLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIST 456 (643)
Q Consensus 377 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~ 456 (643)
.+|++.+|++|++.++.... . . ++.+. ... .....++++.++++.|++.+++ +.||+.
T Consensus 301 -------~~d~~~~l~~L~~~l~~~~~----~-~----~~~~~--~~~---~~~~~~i~~~~~~~~l~~~l~~-~~ivv~ 358 (514)
T PRK07586 301 -------GEDAAAALEALADALGAKPA----A-P----PLAAP--ARP---PLPTGALTPEAIAQVIAALLPE-NAIVVD 358 (514)
T ss_pred -------cccHHHHHHHHHHhhccccc----c-h----hhhhc--ccc---CCCCCCcCHHHHHHHHHHhCCC-CeEEEe
Confidence 27999999999887653210 0 0 11111 001 1123569999999999999999 999999
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++..|..+++....|++|+++.+ |+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++|||+|+++||+
T Consensus 359 d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~Ta~~~~lpv~ivV~ 437 (514)
T PRK07586 359 ESITSGRGFFPATAGAAPHDWLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVTTVIF 437 (514)
T ss_pred CCCcCHHHHHHhccccCCCCEEccCC-cccccHHHHHHHHHHhCCCCeEEEEEechHHHhHHHHHHHHHHcCCCCEEEEE
Confidence 99999999999999999999998776 99999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccc---cccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEE
Q 040733 537 NNQYLGMNVEYEDRYFEANR---ANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVM 613 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~---~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~ 613 (643)
||++|++++++|...+.... ...+. ......+||.++|++||+++++|++++||+++|+++++.++|.||||+
T Consensus 438 NN~~y~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~~lA~a~G~~~~~V~~~~el~~al~~a~~~~~p~liev~ 513 (514)
T PRK07586 438 ANRAYAILRGELARVGAGNPGPRALDML----DLDDPDLDWVALAEGMGVPARRVTTAEEFADALAAALAEPGPHLIEAV 513 (514)
T ss_pred eCchhHHHHHHHHHhcCCCCCccccccc----cCCCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999999998865432111 00000 001235899999999999999999999999999999999999999998
Q ss_pred e
Q 040733 614 V 614 (643)
Q Consensus 614 v 614 (643)
+
T Consensus 514 ~ 514 (514)
T PRK07586 514 V 514 (514)
T ss_pred C
Confidence 5
No 53
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=100.00 E-value=2.2e-92 Score=799.56 Aligned_cols=529 Identities=17% Similarity=0.185 Sum_probs=433.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++++|++.|+++||++|||+||+++++|+++|.++. |++|.+|||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 8 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~ 87 (568)
T PRK07449 8 NTLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANL 87 (568)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhh
Confidence 378999999999999999999999999999999997664 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCc--CcHHHHHHHHHHH---hhcCCCCeE
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDV--DDIPRIIKEAFFI---ATSGRPGPV 222 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~--~~i~~~l~~A~~~---A~s~~~GPV 222 (643)
++||++||.+++|||+|+|+++....+++.+|++||.++++++|++..+..+. +.++..++++++. |.++++|||
T Consensus 88 l~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV 167 (568)
T PRK07449 88 YPAVIEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPV 167 (568)
T ss_pred hHHHHHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCE
Confidence 99999999999999999999999999999999999999999999766665443 2344444444444 788999999
Q ss_pred EEEcccchhhhccCCCCCC-CC--CCCCCCC---CCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHh
Q 040733 223 LIDIPVDVQLELAVPNWNQ-PC--KLPSCIS---SLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLT 296 (643)
Q Consensus 223 ~i~iP~Dv~~~~~~~~~~~-~~--~~p~~~~---~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~l 296 (643)
||+||.|++..+....... +. ....... ..+..+++..+++++++|++ |||+|++|+|+..+.+++.+|+|++
T Consensus 168 ~i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-krPvii~G~g~~~~~~~l~~lae~~ 246 (568)
T PRK07449 168 HINCPFREPLYPDDDDDTGSPWLAPLGDWWQDDWLRQTVQPEVTSQRDWDIWRQ-KRGVVIAGRLSAEEGQAIAALAQLL 246 (568)
T ss_pred EEeCCCCCCCCCCCcccccccccccccccccccccccccCccccchhhhhhhcc-CCeEEEECCCChHHHHHHHHHHHHC
Confidence 9999999865433211000 00 0000000 00122456778999999998 9999999999987679999999999
Q ss_pred CCceeecCCCCCCCCCCCCCcccccCCC-CcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccC
Q 040733 297 GIPVTCTTMGLGLFPCTDELCLRMVGMF-GTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGK 375 (643)
Q Consensus 297 g~PV~tt~~gkg~~~~~hpl~lG~~g~~-~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~ 375 (643)
|+||++|++||+.+|++||+++|++|.. +...++++++++|+||++|+++.+..+..|.. ....++||||+|+.++++
T Consensus 247 g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~~~~~~~~~-~~~~~~i~id~d~~~~~~ 325 (568)
T PRK07449 247 GWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTSKRLLQWLA-DCEPEYWVVDPGPGRLDP 325 (568)
T ss_pred CCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCchhHHHHHh-cCCCCEEEECCCCCcCCC
Confidence 9999999999999999999999998754 56667788999999999999986554433321 123489999999999999
Q ss_pred CCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc--cCCCCCCCHHHHHHHHHhcCCCCCeE
Q 040733 376 VKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY--KTFGEEIPPQYAIQILNELTDDEETI 453 (643)
Q Consensus 376 ~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~L~~~l~~~d~i 453 (643)
++..++.|.+|++.+|++ ... . ....|.+++...++++.... ....+++++..+++.|++.+++ +.+
T Consensus 326 ~~~~~~~i~~d~~~~l~~-~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-~~i 394 (568)
T PRK07449 326 AHHATRRLTASVATWLEA-HPA---E------KRKPWLQEWQALNEKAREAVREQLAEDTFTEAKVAAALADLLPE-GGQ 394 (568)
T ss_pred CCCceEEEEEcHHHHHHh-ccc---c------cchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhCCC-CCe
Confidence 999999999999999988 211 1 12356665544333221100 0123569999999999999999 888
Q ss_pred EEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEE
Q 040733 454 ISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKI 533 (643)
Q Consensus 454 v~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~i 533 (643)
|+.|.|++..|..+++....+.+++.+.++++|||++|+|||++++ |+++||+|+|||||+|+++||+|++||++|+++
T Consensus 395 v~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-~~~~vv~i~GDGsf~~~~~eL~Ta~r~~l~i~i 473 (568)
T PRK07449 395 LFVGNSLPVRDVDAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA-SAKPTVALIGDLSFLHDLNGLLLLKQVPAPLTI 473 (568)
T ss_pred EEEECcHHHHHHHHccCcCCCceEEecCCccchhhHHHHHHHHHhc-CCCCEEEEechHHhhcCcHHHHhhcccCCCeEE
Confidence 8889999988998898888888999998899999999999999999 899999999999999999999999999999999
Q ss_pred EEEeCCCchhhHHH---HHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEE
Q 040733 534 LLINNQYLGMNVEY---EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 534 vV~NN~~~g~~~~~---q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lI 610 (643)
||+||++|++++.. |...+..+ .+++ ...+||+++|++||+++++|++++||+++|+++++.++|+||
T Consensus 474 vVlNN~g~~~~~~~~~~~~~~~~~~----~~~~-----~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~p~lI 544 (568)
T PRK07449 474 VVVNNNGGGIFSLLPQPEEEPVFER----FFGT-----PHGVDFAHAAAMYGLEYHRPETWAELEEALADALPTPGLTVI 544 (568)
T ss_pred EEEECCCCccccCCCCCCCcchhhH----hhcC-----CCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 99999999976433 11111111 1111 246899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCc
Q 040733 611 DVMVSYQEHV 620 (643)
Q Consensus 611 eV~v~~~~~~ 620 (643)
||.+++.+..
T Consensus 545 ev~id~~~~~ 554 (568)
T PRK07449 545 EVKTNRSQGA 554 (568)
T ss_pred EEeCChhhhH
Confidence 9999877643
No 54
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=1.3e-84 Score=800.51 Aligned_cols=547 Identities=20% Similarity=0.221 Sum_probs=437.2
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEE
Q 040733 58 TDFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVC 136 (643)
Q Consensus 58 ~~~~~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~ 136 (643)
+.|.+++. +.+..++++|++.|+++||++|||+||+++++|++++.+.+ |++|.+|||++|+|||+||||+|||||||
T Consensus 290 ~~~~~~~~-~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~ 368 (1655)
T PLN02980 290 SNFLKDYA-NINAVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVV 368 (1655)
T ss_pred hhHhHhCC-CHHHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEE
Confidence 33444443 34467999999999999999999999999999999997655 99999999999999999999999999999
Q ss_pred EEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcH------HHHHHHH
Q 040733 137 LVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDI------PRIIKEA 210 (643)
Q Consensus 137 ~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i------~~~l~~A 210 (643)
++|+|||++|+++||++|+.+++|||+||||+|.+.++++++|++||..+|+++|||++++.+++++ ++.+++|
T Consensus 369 i~TsGPG~tN~l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A 448 (1655)
T PLN02980 369 ITSSGTAVSNLLPAVVEASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSA 448 (1655)
T ss_pred EEeCcHHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999983 5899999
Q ss_pred HHHhhcCCCCeEEEEcccchhhhccCCCCC-----------CC-CCCCCCC--CC-CCCCCCHHHHHHHHHHHHhCCCcE
Q 040733 211 FFIATSGRPGPVLIDIPVDVQLELAVPNWN-----------QP-CKLPSCI--SS-LPKEPDELALRQTLKLIVESKNPV 275 (643)
Q Consensus 211 ~~~A~s~~~GPV~i~iP~Dv~~~~~~~~~~-----------~~-~~~p~~~--~~-~~~~~~~~~i~~~~~~L~~AkrPv 275 (643)
++.|+++|+|||||+||.|.+.......+. .. .....+. .. ..+.++.+.+++++++|.+||||+
T Consensus 449 ~~~A~s~rpGPVhL~iP~~~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkRPv 528 (1655)
T PLN02980 449 VHWATSSPCGPVHINCPFREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEAKRGL 528 (1655)
T ss_pred HHHHhCCCCCCEEEECccCCccccccccccccccccchhcccCCCccccccccccccccccchhhHHHHHHHHHhCCCcE
Confidence 999999999999999997643322111110 00 0000000 00 011246678999999999999999
Q ss_pred EEEcCCchh-hHHHHHHHHHHhCCceeecCCC-C------CCCCC--CCCCcccccCCCCcHHHHHhhhcCCEEEEecCc
Q 040733 276 LCVGGGCLN-SSEELRKFVGLTGIPVTCTTMG-L------GLFPC--TDELCLRMVGMFGTVYANYAVNECDLLLAAGVR 345 (643)
Q Consensus 276 Il~G~g~~~-~~~~l~~lae~lg~PV~tt~~g-k------g~~~~--~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~ 345 (643)
||+|+|+.. ...++.+|||++||||++|+++ + |+||+ +||+++|++|.......+..+.++|+||+||++
T Consensus 529 IvaG~G~~~~~a~~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~g~~~~~~~~~~~~~aDlVl~iG~r 608 (1655)
T PLN02980 529 LLIGAIHTEDDIWAALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHLDHALLSDSVRNWIQFDVVIQIGSR 608 (1655)
T ss_pred EEEcCCCchHHHHHHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchHHHHhCchhhhccCCCCEEEEeCCc
Confidence 999999862 2335689999999999999864 5 99999 899999988752222245567899999999999
Q ss_pred cCc-cccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCC
Q 040733 346 FNE-RMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424 (643)
Q Consensus 346 ~~~-~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~ 424 (643)
++. +.++.+..+.+ .++||||+|+.++++++..++.|++|++.+|+.|.+.+.. .....|.+++...+....
T Consensus 609 l~s~~~t~~~~~~~~-~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~~~~------~~~~~w~~~~~~~~~~~~ 681 (1655)
T PLN02980 609 ITSKRVSQMLEKCFP-FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKAQFP------RRRSKWHGHLQALDGMVA 681 (1655)
T ss_pred cccHHHHHHHHhCCC-CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhccCc------chhHHHHHHHHHHHHHHH
Confidence 863 44444332333 4699999999999999999999999999999988653221 112357666655443221
Q ss_pred Cc--cc-CCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChh----HHHHHHhcc-----------ccCCCeEEe-cCCCcc
Q 040733 425 FS--YK-TFGEEIPPQYAIQILNELTDDEETIISTGVGQH----QMWAIQFYM-----------YKRARQLLT-SSGFGS 485 (643)
Q Consensus 425 ~~--~~-~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~----~~~~~~~~~-----------~~~p~~~~~-~~~~g~ 485 (643)
.. .. ....++++.++++.|++.+|+ |.+|+.|+|++ .+|+.++++ .+.|++++. ++++|+
T Consensus 682 ~~~~~~~~~~~~l~~~~v~~~L~~~Lp~-d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~G~ 760 (1655)
T PLN02980 682 QEISFQIHAESSLTEPYVAHVISEALTS-DSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNRGA 760 (1655)
T ss_pred HHHHhhhhcCCCcchHHHHHHHHHhCCC-CCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEecCCc
Confidence 00 00 112358899999999999999 99999988764 467655443 467788885 789999
Q ss_pred ccc--chHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHh--CCCeEEEEEeCCCchhhHHHHHHhhcccc-cccc
Q 040733 486 MGF--GLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAE--NIPVKILLINNQYLGMNVEYEDRYFEANR-ANSF 560 (643)
Q Consensus 486 mG~--glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~--~lpv~ivV~NN~~~g~~~~~q~~~~~~~~-~~~~ 560 (643)
||+ ++|+|||++++. +++||+|+|||||+|++|||+|++|+ ++|++|||+||++|||+++++......+. ....
T Consensus 761 mG~~G~lpaAIGaala~-~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~ 839 (1655)
T PLN02980 761 SGIDGLLSTAIGFAVGC-NKRVLCVVGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQY 839 (1655)
T ss_pred cchhhhHHHHHHHhhcC-CCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHH
Confidence 999 599999999998 89999999999999999999999984 99999999999999999865321100000 0111
Q ss_pred cCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 561 LGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 561 ~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
+++ ...+||.++|++||+++++|++++||+++|+++++.++|+||||.++++++
T Consensus 840 ~~~-----~~~~df~~lA~a~G~~~~rV~~~~eL~~aL~~a~~~~~p~lIEV~t~~~~~ 893 (1655)
T PLN02980 840 FYT-----SHDISIENLCLAHGVRHLHVGTKSELEDALFTSQVEQMDCVVEVESSIDAN 893 (1655)
T ss_pred hcC-----CCCCCHHHHHHHcCCceeecCCHHHHHHHHHHhhccCCCEEEEEecChhhh
Confidence 222 245899999999999999999999999999999999999999999998764
No 55
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=100.00 E-value=1.6e-82 Score=622.73 Aligned_cols=545 Identities=30% Similarity=0.488 Sum_probs=480.0
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N 146 (643)
.|..-|+-+..|++.||+..||+||..+.|++.+|.+.| |+.|+.||-.+|.+||+||.|+. |..|||+.||||..+.
T Consensus 3 kmravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpagtd 82 (592)
T COG3960 3 KMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (592)
T ss_pred chhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCccc
Confidence 467788899999999999999999999999999999998 99999999999999999999997 7899999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
.++|++.|+.|++|+|.||||.|+....+..||.+|...+.+|++||..++..|..+|.++++||++.+|+|||||.|++
T Consensus 83 mitglysa~adsipilcitgqaprarl~kedfqavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~rpgpvlidl 162 (592)
T COG3960 83 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLIDL 162 (592)
T ss_pred hhhhhhhcccccccEEEecCCCchhhhchhhhhhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCCCCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|+|..++..+.+....+|.+. +.....+.++++.+|.+|+||+|++|+|.. ++.+.+.+|+|.+|+||+.|+
T Consensus 163 p~dvq~aeiefd~d~yepl~~~k----paatr~qaekalaml~~aerplivagggiinadaa~l~~efael~gvpviptl 238 (592)
T COG3960 163 PFDVQVAEIEFDPDMYEPLPVYK----PAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPVIPTL 238 (592)
T ss_pred ccceEEEEEecCccccCcCCcCC----chhHHHHHHHHHHHHhhccCcEEEecCceecccHHHHHHHHHHHcCCcccchh
Confidence 99999988754333323344333 224567888999999999999999999997 578889999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCC-CcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 305 MGLGLFPCTDELCLRMVGMF-GTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~-~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
||-|++|++||+..||.|.. ++.+.|..+..+|+|+-+|.|+..+.|++.+.+.+..++||+|++|..||+.+.+|+.|
T Consensus 239 mgwg~ipddhplmagm~glqtshrygnatll~sd~vfgignrwanrhtgsv~vyt~gr~fihvdieptqigrvf~pdlgi 318 (592)
T COG3960 239 MGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRHTGSVEVYTEGRKFIHVDIEPTQIGRVFCPDLGI 318 (592)
T ss_pred ccccccCCcchhhcccccceecccccchhhhhhhheeeccchhhhcccCceeeeecCceEEEEeccccccceeecCccce
Confidence 99999999999999999866 45788888999999999999999999999888888899999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCC-CCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGV-GFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++|.+++|+.+++...+-+. .....++.|.+++++.|+.....-.-..-++.|+++++++++.+++ |...++-+|.++
T Consensus 319 vsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~rkthfd~vp~kpqrvyeemn~~fgr-d~~yvstiglsq 397 (592)
T COG3960 319 VSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGR-DVCYVTTIGLSQ 397 (592)
T ss_pred eechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHhhcCC-ceeEEEeccHHH
Confidence 99999999999876544322 1245678899999887654432111124589999999999999999 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
..+++|+...+|+.|+.++..|.+||.+|+|+|...|.|+|.||++.||-.|+|-+.||+...++++|.+.||+||..+|
T Consensus 398 ia~aqflhv~~pr~wincgqagplgwtipaalgv~~adp~r~vvalsgdydfqfmieelavgaq~k~pyihv~vnnaylg 477 (592)
T COG3960 398 IAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKIPYIHVLVNNAYLG 477 (592)
T ss_pred HhhhhhhhhcCCcceeecCccCCcccccchhhceeecCCCCceEEeecCchHHHHHHHHhhhhcccCceEEEEecchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhccccccc-ccC--CCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeC
Q 040733 543 MNVEYEDRYFEANRANS-FLG--DPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVS 615 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~-~~g--~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~ 615 (643)
.++|.|+.+- -++.-. .|. +-.......+|..+++|++||+.+||.+++|+..+++++. ++.-|+++|+++.
T Consensus 478 lirqaqr~f~-mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~~p~e~a~af~~a~~lm~eh~vpvvve~ile 556 (592)
T COG3960 478 LIRQAQRAFD-MDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQHRVPVVVEVILE 556 (592)
T ss_pred HHHHHHhcCC-ccceeeehhhccCCccccccCccceeehhccCceeEEecChHHhhHHHHHHHHHHHhcCCCeeeehHHH
Confidence 9999887542 222111 010 1111234567999999999999999999999999999865 3678999999997
Q ss_pred CCCC
Q 040733 616 YQEH 619 (643)
Q Consensus 616 ~~~~ 619 (643)
+-.+
T Consensus 557 rvtn 560 (592)
T COG3960 557 RVTN 560 (592)
T ss_pred Hhhc
Confidence 6543
No 56
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=1.4e-79 Score=638.84 Aligned_cols=521 Identities=21% Similarity=0.330 Sum_probs=434.3
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
++++.+++|+++|.+.||+++||+||+.+++|+|.+...+ +|||.|.||.+|+||||||||++| .+++++|.|+|.+.
T Consensus 2 ~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~G-i~alvTTfGVGELS 80 (557)
T COG3961 2 SPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNG-ISALVTTFGVGELS 80 (557)
T ss_pred CceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcC-ceEEEEecccchhh
Confidence 4679999999999999999999999999999999999987 999999999999999999999999 89999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCC--C---c---cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCC
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAF--Q---E---IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGR 218 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~--Q---~---~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~ 218 (643)
+++||+++|++++|||+|+|-.++..+.++.+ + + ..+.+|.++++.....+++.++.++.|+++++.+...+
T Consensus 81 A~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~ 160 (557)
T COG3961 81 ALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQR 160 (557)
T ss_pred hhcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999888776554421 1 1 13678999999999999888888888888888888765
Q ss_pred CCeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHh
Q 040733 219 PGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLT 296 (643)
Q Consensus 219 ~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~l 296 (643)
.||||.+|.|+...++.... .|...+...+ -+....+.++.++++|+++|||+|++|..+. +..+++.+|++++
T Consensus 161 -RPvYI~lP~dva~~~~~~p~-~Pl~~~~~~s--d~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t 236 (557)
T COG3961 161 -RPVYIGLPADVADLPIEAPL-TPLDLQLKTS--DPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINAT 236 (557)
T ss_pred -CCeEEEcchHHhcCcCCCCC-CccccccCCC--CHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhc
Confidence 79999999999988775431 1211111000 0011235678889999999999999999876 7889999999999
Q ss_pred CCceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccC
Q 040733 297 GIPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGK 375 (643)
Q Consensus 297 g~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~ 375 (643)
++|+++++||||+|+|.||.|+|.| |..+.+.+.++++.||+||.+|+.+.|+.|+.|+.-.+..++|+++.+...+..
T Consensus 237 ~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~~~~~i~~~~~~v~I~~ 316 (557)
T COG3961 237 GFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYKPANIIEIHPDSVKIKD 316 (557)
T ss_pred CCCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecCcccEEEeccCeeEecc
Confidence 9999999999999999999999997 888999999999999999999999999999998876667899999999988877
Q ss_pred CCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCC-CcccCCCCCCCHHHHHHHHHhcCCCCCeEE
Q 040733 376 VKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP-FSYKTFGEEIPPQYAIQILNELTDDEETII 454 (643)
Q Consensus 376 ~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv 454 (643)
.....+.+ +.+|+.|.+.++.+....... +.....+ ..++....+++..++++.+..++.+ +.+|
T Consensus 317 ~~f~~l~m----~~~L~~L~~~i~~~~~~~~~~---------~~~~~~p~~~~~~~~~pLtq~~~w~~~~~fl~p-~dvi 382 (557)
T COG3961 317 AVFTNLSM----KDALQELAKKIDKRNLSAPPV---------AYPARTPPTPYPPANEPLTQEWLWNTVQNFLKP-GDVI 382 (557)
T ss_pred cccCCeeH----HHHHHHHHHHhhhcccCCCCc---------cCCCCCCCCCCCCCCCcccHHHHHHHHHhhCCC-CCEE
Confidence 66666554 889999988887654311100 0001111 1133446789999999999999988 6666
Q ss_pred EeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEE
Q 040733 455 STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKIL 534 (643)
Q Consensus 455 ~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 534 (643)
++|.|.+ .++..-..+++..+++.+.-||++||++|+|+|+++|.|+|+||+++|||||+||+||+.|..|++++++|+
T Consensus 383 iaetGtS-~FG~~~~~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A~~drR~IL~iGDGs~QlTvQEiStmiR~gl~p~if 461 (557)
T COG3961 383 IAETGTS-FFGALDIRLPKGATFISQPLWGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIF 461 (557)
T ss_pred EEccccc-cccceeeecCCCCeEEcccchhhcccccHhhhhhhhcCCCccEEEEEcCchhhhhHHHHHHHHHcCCCcEEE
Confidence 7888887 455555678888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCC---E-EEeCChhHHHHHHHHHHh-CCCcEE
Q 040733 535 LINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP---A-ARVTKKKDVRAAIQLMLE-TPGPYL 609 (643)
Q Consensus 535 V~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~---~-~~V~~~~eL~~al~~al~-~~gp~l 609 (643)
|+||+||-+.+..-. ....++ +...|||.+|.++||+. . .++++.++|..+++.+.+ .+++.+
T Consensus 462 vlNN~GYTIEr~IHg----~~~~YN--------dI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l 529 (557)
T COG3961 462 VLNNDGYTIERAIHG----PTAPYN--------DIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFANNDRIRL 529 (557)
T ss_pred EEcCCCcEEEehhcC----CCcCcc--------cccccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhcCCCceEE
Confidence 999999999765432 111112 24679999999999984 2 678999999999999886 568999
Q ss_pred EEEEeCCCCCc
Q 040733 610 LDVMVSYQEHV 620 (643)
Q Consensus 610 IeV~v~~~~~~ 620 (643)
|||+++..|-+
T Consensus 530 IEv~lp~~D~P 540 (557)
T COG3961 530 IEVMLPVLDAP 540 (557)
T ss_pred EEEecCcccCC
Confidence 99999987743
No 57
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=100.00 E-value=4.8e-74 Score=627.48 Aligned_cols=416 Identities=18% Similarity=0.180 Sum_probs=351.4
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHH
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTG 150 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~g 150 (643)
.+++|++.|+++||+||||+||+++++|+++|.+. +|++|.+|||++|+||||||||+|||||||++|+|||++|+++|
T Consensus 2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g 81 (432)
T TIGR00173 2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA 81 (432)
T ss_pred hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence 47999999999999999999999999999999765 49999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCc------HHHHHHHHHHHhhcCCCCeEEE
Q 040733 151 LMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDD------IPRIIKEAFFIATSGRPGPVLI 224 (643)
Q Consensus 151 l~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~------i~~~l~~A~~~A~s~~~GPV~i 224 (643)
|++|+.+++|||+|+||+++...+++.+|++||.++|+++|||++++.++++ +++.+++|++.|.++++|||||
T Consensus 82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (432)
T TIGR00173 82 VIEASYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHI 161 (432)
T ss_pred HHHhcccCCcEEEEeCCCCHHHhCCCCCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred EcccchhhhccCCCCCCCC----CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCc
Q 040733 225 DIPVDVQLELAVPNWNQPC----KLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIP 299 (643)
Q Consensus 225 ~iP~Dv~~~~~~~~~~~~~----~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~P 299 (643)
+||.|++..+.+....... ..+... .....++++.+++++++|.+||||+|++|+|+. .+.+++.+|+|++|+|
T Consensus 162 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~P 240 (432)
T TIGR00173 162 NVPFREPLYPDPLLQPLQPWLRSGVPTVT-TGPPVLDPESLDELWDRLNQAKRGVIVAGPLPPAEDAEALAALAEALGWP 240 (432)
T ss_pred eCCCCCCCCCCCccccccccccccccccc-CCCCCCChhhHHHHHHHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCe
Confidence 9999997544310000000 000110 111225677899999999999999999999987 4678999999999999
Q ss_pred eeecCCCCCCCCCCCCCcccccC-CCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCC
Q 040733 300 VTCTTMGLGLFPCTDELCLRMVG-MFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKL 378 (643)
Q Consensus 300 V~tt~~gkg~~~~~hpl~lG~~g-~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~ 378 (643)
|++|++|||.+ ++| +++|+++ ..++..+++++ ++|+||+||++++++.+..+ .+.++.++||||+|+.++++++.
T Consensus 241 V~tt~~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~~~~~~~~-~~~~~~~~i~vd~d~~~~~~~~~ 316 (432)
T TIGR00173 241 LLADPLSGLRG-GPH-LVIDHYDLLLANPELREEL-QPDLVIRFGGPPVSKRLRQW-LARQPAEYWVVDPDPGWLDPSHH 316 (432)
T ss_pred EEEeCCCCCCC-CCC-CCcCHHHHHhcCCchhhhC-CCCEEEEeCCCcchhHHHHH-HhCCCCcEEEECCCCCccCCCCC
Confidence 99999999999 779 9999874 66677777778 99999999999987765444 23345789999999999999999
Q ss_pred CCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCC
Q 040733 379 PDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGV 458 (643)
Q Consensus 379 ~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~ 458 (643)
.++.|++|++.+|++|++.++.. .......|.+...+.+...... ..+.+++|.++++.|++.+|+ |.+|+.|+
T Consensus 317 ~~~~i~~D~~~~l~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~p~~~~~~l~~~lp~-d~ivv~d~ 390 (432)
T TIGR00173 317 ATTRLEASPAEFAEALAGLLKNP---DAAWLDRWLEAEAKAREALREV--LAEEPLSELSLARALSQLLPE-GAALFVGN 390 (432)
T ss_pred ceEEEEECHHHHHHHhhhccCCC---ChHHHHHHHHHHHHHHHHHHHH--hccCCccHHHHHHHHHHhCCC-CCeEEEEC
Confidence 99999999999999998776431 0111233433333222211111 113469999999999999999 99999999
Q ss_pred ChhHHHHHHhcccc-CCCeEEecCCCcccccchHHHHHHHH
Q 040733 459 GQHQMWAIQFYMYK-RARQLLTSSGFGSMGFGLPAAMGAAV 498 (643)
Q Consensus 459 G~~~~~~~~~~~~~-~p~~~~~~~~~g~mG~glpaAiGaal 498 (643)
|++..|..+|+..+ .|+++++++++|+||+|||+|||+++
T Consensus 391 g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 391 SMPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred CHHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 99999999999887 79999999999999999999999986
No 58
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=3.1e-71 Score=573.64 Aligned_cols=520 Identities=22% Similarity=0.313 Sum_probs=426.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+++.+++|+++|.+.||++|||+||+.++.|+|-|++.+ +|++.|+||.+|+||||||||+.| .++|++|.|+|.+.+
T Consensus 3 ~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~G-i~a~VtTfgVGeLSA 81 (561)
T KOG1184|consen 3 PITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKG-IGACVTTFGVGELSA 81 (561)
T ss_pred ceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcC-ceEEEEEeccchhhh
Confidence 578999999999999999999999999999999999987 999999999999999999999999 899999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCC--Cc---c---CHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAF--QE---I---PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~--Q~---~---d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
++|+++||++++|||+|+|-.++..++++.. ++ - -+.+|++.++.++.-+.+.++.++.|++|++.|....
T Consensus 82 lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~- 160 (561)
T KOG1184|consen 82 LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKES- 160 (561)
T ss_pred hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhc-
Confidence 9999999999999999999988877766532 11 1 2578999999999999999999999999999998654
Q ss_pred CeEEEEcccchhhhccCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHH
Q 040733 220 GPVLIDIPVDVQLELAVPNW--NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGL 295 (643)
Q Consensus 220 GPV~i~iP~Dv~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~ 295 (643)
.||||.||.|+...+++... +.+..++.+.. .+....+.++.+++++..+++|+|++|.-++ +..++..+|+++
T Consensus 161 rPVYi~iP~n~~~~~~~~~~l~~~p~~~~~~~s--~~e~~~~~v~~i~e~i~~~~~Pvil~~~~~~r~~~~~~~~~l~~~ 238 (561)
T KOG1184|consen 161 KPVYIGVPANLADLPVPAFGLLPVPLDLSPKPS--NKEGLEEAVDAILELINKAKKPVILGDPKLRRAKAESAFVELADA 238 (561)
T ss_pred CCeEEEeecccccCcCCcccCCCCCcccCCCCC--cHHHHHHHHHHHHHHhhhccCCeeeccccccHHHHHHHHHHHHHh
Confidence 79999999998876653211 11111111100 0112346778889999999999999999776 677889999999
Q ss_pred hCCceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCccccc
Q 040733 296 TGIPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIG 374 (643)
Q Consensus 296 lg~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~ 374 (643)
++.|++.|+||||.++|+||+|.|++ |..+.+...+.++.+|++|.+|..++++.++.|....++.++++++.|...+.
T Consensus 239 ~~~p~~vtp~gKg~i~E~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~~sd~ss~~~~~~~k~~~~i~~~~d~v~i~ 318 (561)
T KOG1184|consen 239 TGFPVFVTPMGKGFIPESHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPLFNDYSSGGFSYLYKKKNAIEFHSDRVKIR 318 (561)
T ss_pred hCCCeeEeecccccccCcCCceeeEEecccccHhHHHHHhhcCeEEEecccccccccceeEeecCccceEEEecceEEec
Confidence 99999999999999999999999997 88888999999999999999999999999998886667889999999988776
Q ss_pred CCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC-cccCCCCCCCHHHHHHHHHhcCCCCCeE
Q 040733 375 KVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF-SYKTFGEEIPPQYAIQILNELTDDEETI 453 (643)
Q Consensus 375 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~L~~~l~~~d~i 453 (643)
......+ +++.+|+.|++.++....... . ......+.+. .......++...+++..++.++.+ ..+
T Consensus 319 ~~~f~~v----~mk~~l~~Lak~I~~~~~~~~----~----y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~-~d~ 385 (561)
T KOG1184|consen 319 NATFGGV----LMKDFLQELAKRIKKNKTSYE----N----YVRIPVPEPKPLACPPNAPLRQEWMWNHIQKFLSS-GDV 385 (561)
T ss_pred cccccce----eHHHHHHHHHHhhcccccchh----c----ccccCCCCCCCCCCCCcchhhHHHHHHHHHhhcCC-Cce
Confidence 5333333 569999999988876543211 0 0000000000 011234568999999999999988 556
Q ss_pred EEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEE
Q 040733 454 ISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKI 533 (643)
Q Consensus 454 v~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~i 533 (643)
+.+++|.+. ++.+-+.++....+.+...||++||++|+++|++.|.|+++||+|+|||||++++||++|+.|.++|.+|
T Consensus 386 v~~ETG~S~-F~~~~~~fP~g~~~~~q~~wgsIG~svga~lG~a~a~~e~rvilfiGDGs~qlTvQeiStmir~gl~~~i 464 (561)
T KOG1184|consen 386 VIAETGDSW-FGINQTKFPKGCGYESQMQWGSIGWSVGATLGYAQAAPEKRVILFIGDGSFQLTVQEISTMIRWGLKPII 464 (561)
T ss_pred EEEecccce-ecceeeccccccceEEEEEEeeccccchhhhhhhhccCCceEEEEecCccceeeHHHHHHHHhcCCCcEE
Confidence 667777763 4455567788888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCC-----CEEEeCChhHHHHHHHHHH--hCCC
Q 040733 534 LLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGI-----PAARVTKKKDVRAAIQLML--ETPG 606 (643)
Q Consensus 534 vV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~-----~~~~V~~~~eL~~al~~al--~~~g 606 (643)
+|+||+||-+.+.... . .++ ...++||.++.++||. +..++.+-+|+.++++.+. +.++
T Consensus 465 f~~NN~GYTIE~~IH~----~--~Yn--------~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~~~~~ 530 (561)
T KOG1184|consen 465 FLINNGGYTIEVEIHD----G--PYN--------DIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFEKNDK 530 (561)
T ss_pred EEEeCCceEEEEeecC----C--Ccc--------ccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhcccCc
Confidence 9999999988653221 0 011 2356999999999986 4568889999999999887 3678
Q ss_pred cEEEEEEeCCCCCc
Q 040733 607 PYLLDVMVSYQEHV 620 (643)
Q Consensus 607 p~lIeV~v~~~~~~ 620 (643)
+.+|||+++.+|.+
T Consensus 531 i~liEv~l~~~D~p 544 (561)
T KOG1184|consen 531 IRLIEVILPVDDAP 544 (561)
T ss_pred eEEEEEecCcccCh
Confidence 99999999887743
No 59
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-70 Score=554.54 Aligned_cols=554 Identities=23% Similarity=0.277 Sum_probs=456.2
Q ss_pred CCCCcHHHHHHHHHHHCC---------CCEEEEccC-CCcHHHHHHHhhCC--CeEEecCChhHHHHHHHHHHHHhCC--
Q 040733 67 DKPRKGADIIVEALERQG---------VTTVFAYPG-GASIEIHQSLTRSN--IRSILPRHEQGGIFAAEGYARSSGT-- 132 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~G---------V~~vFg~PG-~~~~~l~~al~~~~--i~~i~~~hE~~A~~~A~Gyar~sg~-- 132 (643)
+..+|.+++|++.|.+.= |.-||.+-| +.+..|=++|.... +.....+|||+-+++|.+|+|...|
T Consensus 4 TvRlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr 83 (617)
T COG3962 4 TVRLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRR 83 (617)
T ss_pred eehhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhce
Confidence 345789999999998653 234788888 56788999998864 9999999999999999999999964
Q ss_pred cEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC------CCCCc--cCHHHHhhccceeeeEeCCcCcHH
Q 040733 133 PGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT------DAFQE--IPVVEVTRYMTKHNYLVLDVDDIP 204 (643)
Q Consensus 133 ~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~------~~~Q~--~d~~~~~~~~tk~~~~v~~~~~i~ 204 (643)
.-+|..+.|||++|++++-+-|..+++|||+|-||+=-..+-. ..|.+ +...+.|+|++||.-+|++||++.
T Consensus 84 ~~A~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~ 163 (617)
T COG3962 84 IYAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLM 163 (617)
T ss_pred eeEEecccCCcHHHHHHHHHHHHhhcCceEeeccchhcccCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHH
Confidence 5677778899999999999999999999999999864322111 11222 223568999999999999999999
Q ss_pred HHHHHHHHHhhcC-CCCeEEEEcccchhhhccCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCc
Q 040733 205 RIIKEAFFIATSG-RPGPVLIDIPVDVQLELAVPNWNQPCKLP-SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGC 282 (643)
Q Consensus 205 ~~l~~A~~~A~s~-~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~ 282 (643)
..+.+|++..+.+ .-|||.|.+|.|||.+..+ |+....-+ -+..+ .+.|++..++.++++|+.+|||+|++|+|+
T Consensus 164 sal~rA~~VmTDPA~~GpvTl~l~QDVq~eA~D--yp~~FF~~rv~~~r-R~~Pd~~eL~~A~~lik~ak~PlIvaGGGv 240 (617)
T COG3962 164 SALPRAMRVMTDPADCGPVTLALCQDVQAEAYD--YPESFFEKRVWRIR-RPPPDERELADAAALIKSAKKPLIVAGGGV 240 (617)
T ss_pred HHHHHHHHHhCChhhcCceEEEechhhhhhhcC--CcHHhhhhhhhhcc-CCCCCHHHHHHHHHHHHhcCCCEEEecCce
Confidence 9999999998753 3499999999999987553 22221111 11111 245899999999999999999999999999
Q ss_pred h--hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcccccc-C
Q 040733 283 L--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA-T 359 (643)
Q Consensus 283 ~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~-~ 359 (643)
. ++.++|++|+|..|+||++|-.|||.++.+||+++|.+|..|+..+|.+.++|||||.||+|+.+++|+++..|. +
T Consensus 241 ~YS~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~vGvTGt~AAN~~A~~ADlVigiGTR~~DFTTgS~alF~~~ 320 (617)
T COG3962 241 LYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDFTTGSKALFKNP 320 (617)
T ss_pred eechHHHHHHHHHHhcCCceEeccCCcccccccCccccccccccchHHHHhhhhhcCEEEEecccccccccccHHHhcCC
Confidence 8 788999999999999999999999999999999999999999999999999999999999999999999988875 7
Q ss_pred CceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc-----cCC--CC
Q 040733 360 RAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY-----KTF--GE 432 (643)
Q Consensus 360 ~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-----~~~--~~ 432 (643)
..|++.|+.-+..-.|. ....+++|++..|++|.+.|..-.. ...|.++....+..|..+. ... ..
T Consensus 321 ~~k~l~lNV~~~da~K~--~a~~lvaDAr~~L~~L~~~L~g~~~-----~~~w~~~~~~~~~~w~~~~~~~~a~~~~lnt 393 (617)
T COG3962 321 GVKFLNLNVQPFDAYKH--DALPLVADARAGLEALSEALGGYRT-----AAGWTDERERLKAAWDAEADAPTAKNHFLNT 393 (617)
T ss_pred CceEEEeeccccccccc--ccceehhHHHHHHHHHHHHhccccc-----chhHHHHHHHhhhhhhhhccccccccccccc
Confidence 78999999888765553 6788999999999999999886432 2468888777665554311 111 12
Q ss_pred CCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc
Q 040733 433 EIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG 512 (643)
Q Consensus 433 ~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG 512 (643)
..+...++-.+++..++ |.+|++..|.--.-..++|+...|..|....+|.+|||-+..++|+|+|.|+|.|++++|||
T Consensus 394 ~ptq~~vigav~~~~~~-~svvvcAAGsLPGdLhkLW~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a~pdreV~vmVGDG 472 (617)
T COG3962 394 LPTQTQVIGAVQRTISD-DSVVVCAAGSLPGDLHKLWRAGVPGTYHLEYGFSCMGYEIAGGLGAKAAEPDREVYVMVGDG 472 (617)
T ss_pred CccchhHHHHHHhhcCC-CcEEEEeCCCCcHHHHHHhccCCCCceeeeecccccccccccccccccCCCCCeEEEEEccc
Confidence 34566889999999998 77777777765445567788889999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCC-CCCCCCCHHHHHhHCCCCEEEeCCh
Q 040733 513 SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLR-KSEIFPDMLKFAEACGIPAARVTKK 591 (643)
Q Consensus 513 sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~-~~~~~~d~~~lA~a~G~~~~~V~~~ 591 (643)
||+|--.||.|++.++..++|++++|.|||.|..+|....+..+. +.+-+-.+ .....+||++.|++||++.++|.+.
T Consensus 473 SymMlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~-~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~~i 551 (617)
T COG3962 473 SYMMLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFN-NLLRDTDHEEEILQVDFAAHAESYGAKAYKVGTI 551 (617)
T ss_pred chhhhhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchhh-hhhhhhcccCCCCcccHHHHHhhcCceeEecCCH
Confidence 999999999999999999999999999999999999765443332 11211111 2356789999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCCCccccccccc
Q 040733 592 KDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILE 636 (643)
Q Consensus 592 ~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~~~~~~~~~~~ 636 (643)
+||+.+|+++.++.+.+||++.+++ .++...++.|||+...
T Consensus 552 ~eL~aAL~~Ak~~~~ttvi~I~t~P----~~~t~~g~~WWdV~V~ 592 (617)
T COG3962 552 EELEAALADAKASDRTTVIVIDTDP----KTTTDDGGSWWDVAVP 592 (617)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecCC----ccccCCCCceeecccc
Confidence 9999999999999999999999976 3566778999997654
No 60
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-59 Score=494.96 Aligned_cols=524 Identities=19% Similarity=0.216 Sum_probs=404.0
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
..+...+..+++.|.++||++++.+||+++.||.-++.+.+ |+++...+|++|+|+|.|.||++++|.+++||||.+++
T Consensus 5 ~~nt~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~A 84 (566)
T COG1165 5 NPNTLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVA 84 (566)
T ss_pred chhHHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhh
Confidence 34568999999999999999999999999999999999986 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCc-------HHHHHHHHHHHhhcCC
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDD-------IPRIIKEAFFIATSGR 218 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~-------i~~~l~~A~~~A~s~~ 218 (643)
|++++|.||...++|+||+|+|+|.+++++++.|.+||..+|.++.+|+..+..|++ +..+-.+++..|++..
T Consensus 85 Nl~PAViEA~~srvpLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a~~~~ 164 (566)
T COG1165 85 NLYPAVIEANLSRVPLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQARTPH 164 (566)
T ss_pred hccHHHHhhhhcCCceEEEeCCCCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999987764 4445556667777788
Q ss_pred CCeEEEEcccchhhhccCCCC-C-CC--CCCCCCCCCC-CCCCC--HHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHH
Q 040733 219 PGPVLIDIPVDVQLELAVPNW-N-QP--CKLPSCISSL-PKEPD--ELALRQTLKLIVESKNPVLCVGGGCLNSSEELRK 291 (643)
Q Consensus 219 ~GPV~i~iP~Dv~~~~~~~~~-~-~~--~~~p~~~~~~-~~~~~--~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~ 291 (643)
+||||||+|++.+.-+..... . .+ .++..+.... +..-+ .+.+.+ .+. ..+||++||+|.-.....+++.+
T Consensus 165 ~GpVHiN~PfrePL~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~rgviv~G~~~~~e~~~i~~ 242 (566)
T COG1165 165 AGPVHINVPFREPLVPDLEPEGAGTPWGRPLGHWWFYTGPWTVDQGPDLLSE-WFF-WRQKRGVIVAGRMSAQEGKGILA 242 (566)
T ss_pred CCceEecCCCCccCCCCCCccccccccccccCchhhcCCceeeecccccccc-hhh-hcccCceEEEecCchhhhHHHHH
Confidence 999999999997654331110 0 00 0111110000 00000 112222 333 35799999999966666667999
Q ss_pred HHHHhCCceeecCC-CCCCC-CCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccC---CceEEEE
Q 040733 292 FVGLTGIPVTCTTM-GLGLF-PCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT---RAKIVHI 366 (643)
Q Consensus 292 lae~lg~PV~tt~~-gkg~~-~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~---~~~iI~I 366 (643)
+++.+|||+++.+. +.+.. +. ..+++ .+..+.+-+.. |.||.||.++ +++...+|.. ..+.+.|
T Consensus 243 ~a~~lg~PilaDplS~lr~~i~~-yD~~L------~~~~~~~~L~~-d~VI~fG~~~---~SK~l~qwl~~~~~~~~~vv 311 (566)
T COG1165 243 LANTLGWPILADPLSPLRNYIPC-YDLWL------ANPKAAEKLRP-DIVIQFGSPP---TSKRLLQWLADTEPIEYWVV 311 (566)
T ss_pred HHHHhCCceecccccccCCCccc-chhhh------cCchhhhhcCc-cEEEEeCCCc---ccHHHHHHHhccCCCcEEEE
Confidence 99999999999864 33322 11 11222 22233333334 9999999997 5566666654 3578999
Q ss_pred cCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc-c-CCCCCCCHHHHHHHHH
Q 040733 367 DIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY-K-TFGEEIPPQYAIQILN 444 (643)
Q Consensus 367 d~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~L~ 444 (643)
|..+..++..+..+..+.+|+..+++.+..... .++.|.+++....++..... . ..+..+....+...|.
T Consensus 312 d~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~Wl~~~~~~~~~~~~~v~~~~~~~~~~e~~~a~~l~ 383 (566)
T COG1165 312 DPGGGWLDPSHHATTRLSADVATWARSIHPAGR--------IRKPWLDEWLALNEKARQAVRDQLAAEALTEAHLAAALA 383 (566)
T ss_pred cCCCCcCCcccccceEEEeehhHhHHHhccccc--------cccHHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHH
Confidence 999999999888888899999999876643211 03477777665544332110 0 1122788899999999
Q ss_pred hcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHH
Q 040733 445 ELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAI 524 (643)
Q Consensus 445 ~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta 524 (643)
+.+|+ +..++.+.++..-+...++....+.+.+++.|-..|-..+++|+|++.+. .+++|+++||.||+|+++.|...
T Consensus 384 ~~lp~-~~~LFvgNSmpVRdvd~~~~~~~~~~v~sNRGA~GIDG~vSTA~Gi~~a~-~~ptv~liGDLS~lhD~NgLl~~ 461 (566)
T COG1165 384 DLLPP-QDQLFVGNSMPVRDVDALGQLPAGYRVYSNRGASGIDGTVSTALGIARAT-QKPTVALIGDLSFLHDLNGLLLL 461 (566)
T ss_pred HhCCC-CCeEEEecCchhhhHHHhccCccCceeecCCCccccchhHHHHhhhhhhc-CCceEEEEechhhhhccchHhhc
Confidence 99998 55555455555445555555556777887766544444899999999987 67899999999999999999999
Q ss_pred HHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC
Q 040733 525 KAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET 604 (643)
Q Consensus 525 ~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~ 604 (643)
.+...|.+|||+||+|+|||.+++...... .....||+| +..||+.+|+.||+++.++.+++||+++++++...
T Consensus 462 k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~-~fe~~F~tP-----h~ldF~~la~~y~l~y~~~~s~~~l~~~~~~~~~~ 535 (566)
T COG1165 462 KKVPQPLTIVVVNNNGGGIFSLLPQAQSEP-VFERLFGTP-----HGLDFAHLAATYGLEYHRPQSWDELGEALDQAWRR 535 (566)
T ss_pred CCCCCCeEEEEEeCCCceeeeeccCCCCcc-hHHHhcCCC-----CCCCHHHHHHHhCccccccCcHHHHHHHHhhhccC
Confidence 999999999999999999999987654332 334567775 78999999999999999999999999999999988
Q ss_pred CCcEEEEEEeCCCCC
Q 040733 605 PGPYLLDVMVSYQEH 619 (643)
Q Consensus 605 ~gp~lIeV~v~~~~~ 619 (643)
.|..||||++++++.
T Consensus 536 ~g~~viEvkt~r~~~ 550 (566)
T COG1165 536 SGTTVIEVKTDRSDG 550 (566)
T ss_pred CCcEEEEEecChhHH
Confidence 999999999998764
No 61
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=100.00 E-value=3.4e-43 Score=332.41 Aligned_cols=162 Identities=38% Similarity=0.581 Sum_probs=156.5
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
+++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|++|||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN 80 (164)
T ss_pred CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 589999999999999999999999999999999874 5999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
|+++|+.|++|||+|+|+.++...+++.+|++||.++++++|||++++.+++++++.+++||+.|+++ +|||||+||.|
T Consensus 81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d 159 (164)
T cd07039 81 GLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAK-RGVAVLILPGD 159 (164)
T ss_pred HHHHHHhcCCCEEEEecCCcccccCCCCCcccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999995 59999999999
Q ss_pred hhhh
Q 040733 230 VQLE 233 (643)
Q Consensus 230 v~~~ 233 (643)
++.+
T Consensus 160 v~~~ 163 (164)
T cd07039 160 VQDA 163 (164)
T ss_pred Hhcc
Confidence 9864
No 62
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=100.00 E-value=7.7e-42 Score=320.62 Aligned_cols=154 Identities=29% Similarity=0.463 Sum_probs=149.9
Q ss_pred HHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH
Q 040733 75 IIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMD 153 (643)
Q Consensus 75 ~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~ 153 (643)
+|++.|+++||++|||+||+++++|+++|.++ +|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++||++
T Consensus 2 ~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~ 81 (162)
T cd07037 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE 81 (162)
T ss_pred hHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH
Confidence 68999999999999999999999999999765 59999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCc------HHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 154 AYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDD------IPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 154 A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~------i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
|+.+++|||+|+|+.++...+++.+|++||..+++++|||+.++.++++ +++.+++|++.|.++|||||||+||
T Consensus 82 A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 82 AYYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred HHhcCCCEEEEECCCCHHhcCCCCCcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 9999999999999999998899999999999999999999999999999 9999999999999999999999999
Q ss_pred c
Q 040733 228 V 228 (643)
Q Consensus 228 ~ 228 (643)
.
T Consensus 162 ~ 162 (162)
T cd07037 162 F 162 (162)
T ss_pred C
Confidence 4
No 63
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=100.00 E-value=4.3e-40 Score=315.08 Aligned_cols=167 Identities=49% Similarity=0.771 Sum_probs=157.8
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
||++|+|++.|+++||++|||+||+.+.+|+++|.+++ |++|.+|||++|++||+||+|++|||+||++|+|||++|++
T Consensus 1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence 68999999999999999999999999999999999995 99999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCC-ccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQ-EIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q-~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++|++|+.+++|||+|+|+++....+++.+| +.||..++++++||++++.+++++++.+++|++.|.++++|||||+||
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred HHHhhcccceeeEEEEecccchhhhcccccccchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred cchhhhccC
Q 040733 228 VDVQLELAV 236 (643)
Q Consensus 228 ~Dv~~~~~~ 236 (643)
.|++.++++
T Consensus 161 ~dv~~~~~~ 169 (172)
T PF02776_consen 161 QDVQEAEVD 169 (172)
T ss_dssp HHHHTSEEE
T ss_pred hhHhhCccC
Confidence 999998763
No 64
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=100.00 E-value=1.2e-38 Score=312.83 Aligned_cols=187 Identities=26% Similarity=0.357 Sum_probs=163.9
Q ss_pred CCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecC
Q 040733 432 EEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGD 511 (643)
Q Consensus 432 ~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GD 511 (643)
.+++++++++.|++.+++ |.||+.|+|++.+|+.++++.++|++|+.++++|+|||++|+|||+++|+|+++||+|+||
T Consensus 6 ~~l~~~~~~~~l~~~l~~-d~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GD 84 (202)
T cd02006 6 VPIKPQRVYEEMNKAFGR-DVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGD 84 (202)
T ss_pred CCcCHHHHHHHHHhhCCC-CeEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeC
Confidence 469999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCC--CCCCCCCCCCHHHHHhHCCCCEEEeC
Q 040733 512 GSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGD--PLRKSEIFPDMLKFAEACGIPAARVT 589 (643)
Q Consensus 512 Gsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~--p~~~~~~~~d~~~lA~a~G~~~~~V~ 589 (643)
|||+|++|||+|++||++|+++||+||++|++++++|...++.......+.. ........+||+++|++||+++.+|+
T Consensus 85 G~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~ 164 (202)
T cd02006 85 YDFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT 164 (202)
T ss_pred hHhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEEC
Confidence 9999999999999999999999999999999999988765432111110000 00011235899999999999999999
Q ss_pred ChhHHHHHHHHHHh----CCCcEEEEEEeCCCCC
Q 040733 590 KKKDVRAAIQLMLE----TPGPYLLDVMVSYQEH 619 (643)
Q Consensus 590 ~~~eL~~al~~al~----~~gp~lIeV~v~~~~~ 619 (643)
+++||+++|+++++ .++|+||||++++.++
T Consensus 165 ~~~el~~al~~a~~~~~~~~~p~liev~i~~~~~ 198 (202)
T cd02006 165 KPEELAAAFEQAKKLMAEHRVPVVVEAILERVTN 198 (202)
T ss_pred CHHHHHHHHHHHHHhcccCCCcEEEEEEeccccc
Confidence 99999999999985 7899999999998774
No 65
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=100.00 E-value=1.9e-38 Score=309.69 Aligned_cols=178 Identities=24% Similarity=0.434 Sum_probs=164.7
Q ss_pred CCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecC
Q 040733 432 EEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGD 511 (643)
Q Consensus 432 ~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GD 511 (643)
+++++.++++.|++.+++ |.+|+.|+|++..|..++++.++|++|+.++++|+|||++|+|||+++|.|+++||+|+||
T Consensus 2 ~~l~~~~~~~~l~~~l~~-~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GD 80 (196)
T cd02013 2 NPMHPRQVLRELEKAMPE-DAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGD 80 (196)
T ss_pred CCCCHHHHHHHHHHHCCC-CEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcc
Confidence 468999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCCh
Q 040733 512 GSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKK 591 (643)
Q Consensus 512 Gsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~ 591 (643)
|+|+|+++||+|+++|++|+++||+||++|+++++.|...|+.+..... ...+||+++|++||+++++|+++
T Consensus 81 G~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~--------~~~~d~~~lA~a~G~~~~~v~~~ 152 (196)
T cd02013 81 GAWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTE--------LESESFAKIAEACGAKGITVDKP 152 (196)
T ss_pred hHHhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCccccc--------CCCCCHHHHHHHCCCEEEEECCH
Confidence 9999999999999999999999999999999999888766654433221 24589999999999999999999
Q ss_pred hHHHHHHHHHHh---CCCcEEEEEEeCCCC
Q 040733 592 KDVRAAIQLMLE---TPGPYLLDVMVSYQE 618 (643)
Q Consensus 592 ~eL~~al~~al~---~~gp~lIeV~v~~~~ 618 (643)
+||+++|+++++ .++|+||||++++++
T Consensus 153 ~el~~al~~a~~~~~~~~p~liev~v~~~~ 182 (196)
T cd02013 153 EDVGPALQKAIAMMAEGKTTVIEIVCDQEL 182 (196)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEEEeCccc
Confidence 999999999998 899999999998876
No 66
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=100.00 E-value=3.1e-38 Score=298.12 Aligned_cols=153 Identities=24% Similarity=0.412 Sum_probs=143.4
Q ss_pred HHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH
Q 040733 74 DIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLM 152 (643)
Q Consensus 74 ~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~ 152 (643)
|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.+|||++|+|||+||+|+| +|+||++|+|||++|+++||+
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~ 79 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIA 79 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHH
Confidence 579999999999999999999999999999776 599999999999999999999999 799999999999999999999
Q ss_pred HhhhCCCCEEEEeCCCcccccCCCCC-------Ccc-CHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEE
Q 040733 153 DAYSDSIPILAITGQVSQKLLGTDAF-------QEI-PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLI 224 (643)
Q Consensus 153 ~A~~~~vPvlvItg~~~~~~~g~~~~-------Q~~-d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i 224 (643)
+|+.|++|||+|+|++++...+++.+ |+. ||.++++++|||++++.+++++++.+++||+.|.+++ |||||
T Consensus 80 ~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~-gPV~l 158 (162)
T cd07038 80 GAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRES-RPVYI 158 (162)
T ss_pred HHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCC-CCEEE
Confidence 99999999999999999887777542 333 6899999999999999999999999999999999997 99999
Q ss_pred Eccc
Q 040733 225 DIPV 228 (643)
Q Consensus 225 ~iP~ 228 (643)
+||.
T Consensus 159 ~iP~ 162 (162)
T cd07038 159 EIPR 162 (162)
T ss_pred EccC
Confidence 9994
No 67
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=100.00 E-value=2.2e-37 Score=300.22 Aligned_cols=184 Identities=49% Similarity=0.832 Sum_probs=166.3
Q ss_pred CCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc
Q 040733 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS 513 (643)
Q Consensus 434 i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs 513 (643)
++|.++++.|++.+++ |.+++.|+|++..|..++++.++|++|+.++++|+|||++|+|||++++.|+++||+++|||+
T Consensus 1 ~~~~~~~~~l~~~l~~-~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~ 79 (186)
T cd02015 1 IKPQEVIKELSELTPG-DAIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGS 79 (186)
T ss_pred CCHHHHHHHHHhhCCC-CeEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccH
Confidence 4688999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhH
Q 040733 514 FIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD 593 (643)
Q Consensus 514 f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~e 593 (643)
|+|+++||+|+++|++|+++||+||++|+++++.|...+.++..... ....+||+++|++||+++++|++.+|
T Consensus 80 f~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d~~~~a~a~G~~~~~v~~~~e 152 (186)
T cd02015 80 FQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTT-------LDSNPDFVKLAEAYGIKGLRVEKPEE 152 (186)
T ss_pred HhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeecc-------CCCCCCHHHHHHHCCCceEEeCCHHH
Confidence 99999999999999999999999999999999888766554332211 12458999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEeCCCCCcccccC
Q 040733 594 VRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625 (643)
Q Consensus 594 L~~al~~al~~~gp~lIeV~v~~~~~~~p~~~ 625 (643)
|+++|+++++.++|+||||+++++++..|+.+
T Consensus 153 l~~al~~a~~~~~p~liev~~~~~~~~~~~~~ 184 (186)
T cd02015 153 LEAALKEALASDGPVLLDVLVDPEENVLPMVP 184 (186)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCcccCCcCC
Confidence 99999999999999999999998876655544
No 68
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=100.00 E-value=5.2e-37 Score=294.48 Aligned_cols=174 Identities=29% Similarity=0.511 Sum_probs=158.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcccc
Q 040733 436 PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFI 515 (643)
Q Consensus 436 ~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~ 515 (643)
|+++++.|++.+++ +.++++|+|++..|..++++..++++|+.++++|+|||++|+|+|+++++|+++||+|+|||||+
T Consensus 1 p~~~~~~l~~~l~~-~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~ 79 (177)
T cd02010 1 PQRIVHDLRAVMGD-DDIVLLDVGAHKIWMARYYRTYAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFM 79 (177)
T ss_pred CHHHHHHHHHHCCC-CcEEEecCcHHHHHHHHhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHH
Confidence 35789999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHH
Q 040733 516 MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVR 595 (643)
Q Consensus 516 m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~ 595 (643)
|+++||+|++||++|+++||+||++|+++++.|...+. +..... ...+||+++|++||+++++|++++||+
T Consensus 80 m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~-~~~~~~--------~~~~d~~~~a~a~G~~~~~v~~~~el~ 150 (177)
T cd02010 80 MNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYG-RDSGVD--------FGNPDFVKYAESFGAKGYRIESADDLL 150 (177)
T ss_pred hHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcC-CcccCc--------CCCCCHHHHHHHCCCEEEEECCHHHHH
Confidence 99999999999999999999999999999877765442 222221 245899999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 596 AAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 596 ~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
++|+++++.++|.||||++++.++
T Consensus 151 ~al~~a~~~~~p~liev~~~~~~~ 174 (177)
T cd02010 151 PVLERALAADGVHVIDCPVDYSEN 174 (177)
T ss_pred HHHHHHHhCCCCEEEEEEeccccc
Confidence 999999999999999999987653
No 69
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=100.00 E-value=5e-35 Score=330.80 Aligned_cols=492 Identities=13% Similarity=0.097 Sum_probs=309.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC---C-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS---N-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~---~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
.|+|.+++++.+.+.|++.++||||+...++++.|.+. + +.+++..+|.+|..||.|-+.+..| ++.+|+|||+
T Consensus 4 ~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~aG~r--a~t~ts~~Gl 81 (595)
T TIGR03336 4 LLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAWSGLR--AFCTMKHVGL 81 (595)
T ss_pred eecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHhcCcc--eEEEccCCch
Confidence 57999999999999999999999999999999999763 3 8899999999999999999987666 4457899999
Q ss_pred HHHHHHHHHhh--hCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceee-eEeCCcCcHHHHHHHHHHHhhcCCCCe
Q 040733 145 TNIMTGLMDAY--SDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHN-YLVLDVDDIPRIIKEAFFIATSGRPGP 221 (643)
Q Consensus 145 ~N~~~gl~~A~--~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GP 221 (643)
.=+.-.|..+. .-..|+|++.+++|.....+...++ .++.-.+.|- +...+++++-+...+||++|..-+ =|
T Consensus 82 ~~~~e~l~~~~~~g~~~~iV~~~~~~~gp~~~~~~q~d----~~~~~~~~~~vl~p~~~qE~~d~~~~Af~lae~~~-~P 156 (595)
T TIGR03336 82 NVAADPLMTLAYTGVKGGLVVVVADDPSMHSSQNEQDT----RHYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKFG-LP 156 (595)
T ss_pred hhhHHHhhhhhhhcCcCceEEEEccCCCCccchhhHhH----HHHHHhcCCeEECCCCHHHHHHHHHHHHHHHHHHC-CC
Confidence 76666665554 3467899999988765422222221 1233334433 335667788899999999998754 79
Q ss_pred EEEEcccchhhh--ccC-CCCCCCCCCCCCC---CCCCCCCC-----H----HHHHHHHHHHHhCCCc--------EEEE
Q 040733 222 VLIDIPVDVQLE--LAV-PNWNQPCKLPSCI---SSLPKEPD-----E----LALRQTLKLIVESKNP--------VLCV 278 (643)
Q Consensus 222 V~i~iP~Dv~~~--~~~-~~~~~~~~~p~~~---~~~~~~~~-----~----~~i~~~~~~L~~AkrP--------vIl~ 278 (643)
|.+..-..+-.. .+. +..+.......+. .+....+. . +.++++.+...+.+-. ++|+
T Consensus 157 V~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv 236 (595)
T TIGR03336 157 VILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVI 236 (595)
T ss_pred EEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEE
Confidence 988874433211 110 0000000000000 00000011 1 1222222222221111 3333
Q ss_pred cCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcccccc
Q 040733 279 GGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA 358 (643)
Q Consensus 279 G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~ 358 (643)
..|.. .....+.++++|+.+- ++ .+..+-..-.....+++++.+.||++-....- .......+.
T Consensus 237 ~~G~~--~~~a~ea~~~~Gi~~~-------v~------~~~~i~Pld~~~i~~~~~~~~~vivvEe~~~~-~~~~~~~~~ 300 (595)
T TIGR03336 237 ASGIA--YNYVKEALERLGVDVS-------VL------KIGFTYPVPEGLVEEFLSGVEEVLVVEELEPV-VEEQVKALA 300 (595)
T ss_pred EcCHH--HHHHHHHHHHcCCCeE-------EE------EeCCCCCCCHHHHHHHHhcCCeEEEEeCCccH-HHHHHHHHH
Confidence 33332 2223333444465431 11 11111122334456788899999999765421 111111111
Q ss_pred CC--ceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCH
Q 040733 359 TR--AKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPP 436 (643)
Q Consensus 359 ~~--~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~ 436 (643)
.+ .++.++......+. ....=|.....+.|.+. .... ..... .......+.+.+..+..+..
T Consensus 301 ~~~~~~v~~~G~~d~fi~------~~~~Ld~~~i~~~i~~~-~~~~---~~~~~------~~~~~~~~~r~~~~C~GCp~ 364 (595)
T TIGR03336 301 GTAGLNIKVHGKEDGFLP------REGELNPDIVVNALAKF-GLAP---SVTHE------KPVPKPLPVRPPSLCAGCPH 364 (595)
T ss_pred HhcCCCeEEecccCCccC------cccCcCHHHHHHHHHHh-CCCc---ccccc------cccccccCCCCCCCCCCCCC
Confidence 11 13444433221111 11112556666665432 2110 00000 00001123233456788999
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccC
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM 516 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m 516 (643)
..+++.|++.+++ |.+++.|+|++..|.. .|..++.+ +++||+++|+|+|++++.|+++||+++|||+|+|
T Consensus 365 ~~~~~~l~~~l~~-d~ivv~D~G~~~~~~~------~p~~~~~~--~~~mG~~~~~AiGa~~a~p~~~Vv~i~GDG~f~~ 435 (595)
T TIGR03336 365 RATFYAMKKVADR-EAIFPSDIGCYTLGIQ------PPLGTVDT--TLCMGASIGVASGLSKAGEKQRIVAFIGDSTFFH 435 (595)
T ss_pred hHHHHHHHHhccC-CcEEecCcchhhcccc------CCccccce--eeccCchHHHHhhhhhcCCCCCEEEEeccchhhh
Confidence 9999999999998 9999999999877642 24455443 4899999999999999999999999999999999
Q ss_pred C-HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhH--
Q 040733 517 N-LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD-- 593 (643)
Q Consensus 517 ~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~e-- 593 (643)
+ ++||+|++++++|+++||+||++|||+++++...++. ...+ .....+||+++|++||+++++|.++++
T Consensus 436 ~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~----~~~~----~~~~~~d~~~ia~a~G~~~~~v~~~~~l~ 507 (595)
T TIGR03336 436 TGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGV----TGMG----EATKEISIEELCRASGVEFVEVVDPLNVK 507 (595)
T ss_pred cCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCC----CCCC----CcCCCcCHHHHHHHcCCCEEEEeCcCCHH
Confidence 7 9999999999999999999999999987543211110 1111 123468999999999999999998855
Q ss_pred -HHHHHHHHHhCCCcEEEEEEeCC
Q 040733 594 -VRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 594 -L~~al~~al~~~gp~lIeV~v~~ 616 (643)
+.++|+++++.+||.||++..+-
T Consensus 508 ~l~~al~~a~~~~gp~li~v~~~C 531 (595)
T TIGR03336 508 ETIEVFKAALAAEGVSVIIAKQPC 531 (595)
T ss_pred HHHHHHHHHHhcCCCEEEEEcccC
Confidence 58899999999999999997643
No 70
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=100.00 E-value=2.6e-36 Score=296.71 Aligned_cols=190 Identities=19% Similarity=0.260 Sum_probs=163.3
Q ss_pred HHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCC
Q 040733 438 YAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN 517 (643)
Q Consensus 438 ~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~ 517 (643)
++++.|++.+++ |.+++.|+|++..|..++++.++|++|+.++++|+|||++|+|||++++.|+++||+|+|||+|+|+
T Consensus 3 ~~~~~l~~~l~~-~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~ 81 (205)
T cd02003 3 EVLGALNEAIGD-DDVVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLML 81 (205)
T ss_pred hHHHHHHHhCCC-CCEEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhcc
Confidence 578999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCC------CCCCCCCCHHHHHhHCCCCEEEeCCh
Q 040733 518 LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPL------RKSEIFPDMLKFAEACGIPAARVTKK 591 (643)
Q Consensus 518 ~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~------~~~~~~~d~~~lA~a~G~~~~~V~~~ 591 (643)
.+||+|+++|++|+++||+||++|+|++++|...+..... ..+.... ......+||.++|++||+++.+|+++
T Consensus 82 ~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~ 160 (205)
T cd02003 82 HSEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGSFG-TEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTI 160 (205)
T ss_pred HHHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCcccc-chhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCH
Confidence 9999999999999999999999999999988754432211 1110000 00124589999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCCCcccccc
Q 040733 592 KDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDT 633 (643)
Q Consensus 592 ~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~~~~~~~~ 633 (643)
+||+++|+++++.++|+||||.+++.+ ..|....|++.
T Consensus 161 ~el~~al~~a~~~~gp~lIeV~v~~~~----~~~~~~~~~~~ 198 (205)
T cd02003 161 EELKAALAKAKASDRTTVIVIKTDPKS----MTPGYGSWWDV 198 (205)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeeccc----cCCCCCCeEeC
Confidence 999999999999999999999998765 23555556654
No 71
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=100.00 E-value=5.3e-35 Score=280.01 Aligned_cols=172 Identities=26% Similarity=0.344 Sum_probs=156.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcccc
Q 040733 436 PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFI 515 (643)
Q Consensus 436 ~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~ 515 (643)
|+++++.|++.+++ |.++++|+|++..|+.++++.+.|++++.++++|+||+++|+|||++++.|+++||+++|||+|+
T Consensus 1 p~~~~~~l~~~l~~-~~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~ 79 (172)
T cd02004 1 PYRVLHELQEALPD-DAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFG 79 (172)
T ss_pred CHHHHHHHHHHCCC-CcEEEEcCchHHHHHHHHccccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhc
Confidence 46789999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHH
Q 040733 516 MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVR 595 (643)
Q Consensus 516 m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~ 595 (643)
|+++||+|++++++|+++||+||++|+++++.|...+...... ......+||.++|++||+++.+|++.+||+
T Consensus 80 ~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~-------~~~~~~~d~~~la~a~G~~~~~v~~~~el~ 152 (172)
T cd02004 80 FSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPV-------TTLLPDTRYDLVAEAFGGKGELVTTPEELK 152 (172)
T ss_pred CCHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCce-------eccCCCCCHHHHHHHCCCeEEEECCHHHHH
Confidence 9999999999999999999999999999998887654222111 112356899999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEeC
Q 040733 596 AAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 596 ~al~~al~~~gp~lIeV~v~ 615 (643)
++|+++++.++|.||||+++
T Consensus 153 ~al~~a~~~~~p~liev~i~ 172 (172)
T cd02004 153 PALKRALASGKPALINVIID 172 (172)
T ss_pred HHHHHHHHcCCCEEEEEEcC
Confidence 99999999999999999985
No 72
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=100.00 E-value=1.1e-34 Score=279.16 Aligned_cols=175 Identities=30% Similarity=0.460 Sum_probs=159.8
Q ss_pred CCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc
Q 040733 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS 513 (643)
Q Consensus 434 i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs 513 (643)
+++..+++.|++.+++ +.++++|+|++..|+.++++.+++++|+.++++|+|||++|+|+|+++++|+++||+|+||||
T Consensus 2 ~~~~~~~~~l~~~~~~-~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~ 80 (178)
T cd02014 2 IHPERVAAELNKRAPD-DAIFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGG 80 (178)
T ss_pred CCHHHHHHHHHhHCCC-CeEEEEcCcHHHHHHHHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchH
Confidence 6889999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhH
Q 040733 514 FIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD 593 (643)
Q Consensus 514 f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~e 593 (643)
|+|+++||+|++++++|+++||+||++|+|+++.|...+ ...... ....+||.++|++||++++++++++|
T Consensus 81 f~~~~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~-~~~~~~--------~~~~~d~~~la~a~G~~~~~v~~~~e 151 (178)
T cd02014 81 FAMLMGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMG-QPEFGV--------DLPNPDFAKIAEAMGIKGIRVEDPDE 151 (178)
T ss_pred HHhhHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhc-CCceec--------cCCCCCHHHHHHHCCCeEEEeCCHHH
Confidence 999999999999999999999999999999987775433 111111 12468999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 594 VRAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 594 L~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
|+++|+++++.++|+||||++++++
T Consensus 152 l~~~l~~a~~~~~p~liev~~~~~~ 176 (178)
T cd02014 152 LEAALDEALAADGPVVIDVVTDPNE 176 (178)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCC
Confidence 9999999999999999999998765
No 73
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=100.00 E-value=2e-35 Score=283.23 Aligned_cols=173 Identities=21% Similarity=0.260 Sum_probs=152.7
Q ss_pred CHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccc-cCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc
Q 040733 435 PPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMY-KRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS 513 (643)
Q Consensus 435 ~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~-~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs 513 (643)
+...+++.|++.+|+ |.+|+.|+|++..|..++++. ++|++|+.+.++|+||+++|+|||+++|. +++||+|+||||
T Consensus 2 ~~~~~~~~l~~~l~~-~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~-~~~Vv~i~GDGs 79 (175)
T cd02009 2 TEPALARALPDHLPE-GSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALAT-DKPTVLLTGDLS 79 (175)
T ss_pred chHHHHHHHHHhCCC-CCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhcC-CCCEEEEEehHH
Confidence 345789999999999 999999999999999999998 88999999999999999999999999998 999999999999
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhH
Q 040733 514 FIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD 593 (643)
Q Consensus 514 f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~e 593 (643)
|+|++|||+|++||++|+++||+||++|+++++.|...+...+ ...+.. ...+||.++|++||+++++|++++|
T Consensus 80 f~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~-~~~~~~-----~~~~d~~~lA~a~G~~~~~v~~~~e 153 (175)
T cd02009 80 FLHDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEF-ERLFGT-----PQGLDFEHLAKAYGLEYRRVSSLDE 153 (175)
T ss_pred HHHhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccchh-hhhhcC-----CCCCCHHHHHHHcCCCeeeCCCHHH
Confidence 9999999999999999999999999999998766542221111 111111 1358999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEeC
Q 040733 594 VRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 594 L~~al~~al~~~gp~lIeV~v~ 615 (643)
|+++|+++++.++|+||||.++
T Consensus 154 l~~al~~a~~~~~p~lIev~v~ 175 (175)
T cd02009 154 LEQALESALAQDGPHVIEVKTD 175 (175)
T ss_pred HHHHHHHHHhCCCCEEEEEeCC
Confidence 9999999999999999999985
No 74
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=100.00 E-value=7.6e-35 Score=274.25 Aligned_cols=155 Identities=54% Similarity=0.845 Sum_probs=150.1
Q ss_pred HHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH
Q 040733 74 DIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMD 153 (643)
Q Consensus 74 ~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~ 153 (643)
|+|++.|+++||+++||+||+.+++|++++.+.++++|.++||.+|++||+||+|++||++||++|+|||++|+++++.+
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~ 80 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN 80 (155)
T ss_pred CHHHHHHHHcCCCEEEECCCCchHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH
Confidence 57999999999999999999999999999985559999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 154 AYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 154 A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
|+.+++|||+|+|+++....+++.+|+.|+.++++++|||++++.+++++.+.+++|++.|.++|+|||||+||.
T Consensus 81 A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 81 AYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HHhhCCCEEEEeCCCccccccCCcccccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 999999999999999999989889999999999999999999999999999999999999999989999999984
No 75
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=100.00 E-value=2.4e-33 Score=295.37 Aligned_cols=327 Identities=24% Similarity=0.346 Sum_probs=237.0
Q ss_pred CCCEEEEccCCCcHHHHHHHhh-CC-CeEEecCChhHHHHHHHHHHHHhCCcE-EEEEccchh-hHHHHHHHHHhhhCCC
Q 040733 84 GVTTVFAYPGGASIEIHQSLTR-SN-IRSILPRHEQGGIFAAEGYARSSGTPG-VCLVSSGPG-VTNIMTGLMDAYSDSI 159 (643)
Q Consensus 84 GV~~vFg~PG~~~~~l~~al~~-~~-i~~i~~~hE~~A~~~A~Gyar~sg~~g-v~~~t~GpG-~~N~~~gl~~A~~~~v 159 (643)
||++++|+|.+...+|++.+.+ .+ +++|.+.||..|+.+|.||+.+||+.+ |.+-.||.| +.|.++.|++...-++
T Consensus 1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i 80 (361)
T TIGR03297 1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI 80 (361)
T ss_pred CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence 7999999999999999999984 43 999999999999999999999977655 455688888 8888888888899999
Q ss_pred CEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchhhhccCCCC
Q 040733 160 PILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNW 239 (643)
Q Consensus 160 PvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~~~~~~~~~ 239 (643)
|||+|.|.+... ...+.+|...+..+|+ .+| +. ++||..+.....
T Consensus 81 P~l~~i~~RG~~-----g~~depqh~~~G~~t~------------~lL----~~----------~~i~~~~~~~~~---- 125 (361)
T TIGR03297 81 PLLLIVGWRGEP-----GVHDEPQHVKQGRITL------------SLL----DA----------LEIPWEVLSTDN---- 125 (361)
T ss_pred CeeEEEecCCCC-----CCCCCchhhHHhHHHH------------HHH----HH----------cCCCEEECCCCh----
Confidence 999999965432 2122244444433331 111 11 134444332100
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEE-EcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcc
Q 040733 240 NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLC-VGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCL 318 (643)
Q Consensus 240 ~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl-~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~l 318 (643)
....+.++++.+...+.++|+.+ +..+. |.. +.+
T Consensus 126 ---------------~~~~~~~~~a~~~~~~~~~p~a~l~~~~~---------------------------~~~-~~~-- 160 (361)
T TIGR03297 126 ---------------DEALAQIERALAHALATSRPYALVVRKGT---------------------------FAS-YKL-- 160 (361)
T ss_pred ---------------HHHHHHHHHHHHHHHHHCCCEEEEEcccc---------------------------ccc-ccc--
Confidence 01344566666666666666543 22211 100 000
Q ss_pred cccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 319 RMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 319 G~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
+.
T Consensus 161 -----------------------------------------~~------------------------------------- 162 (361)
T TIGR03297 161 -----------------------------------------KG------------------------------------- 162 (361)
T ss_pred -----------------------------------------cc-------------------------------------
Confidence 00
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhcccc-C----
Q 040733 399 ESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYK-R---- 473 (643)
Q Consensus 399 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~-~---- 473 (643)
.. . ......+++..+++.+.+.+++ +.+|++|+|.... .++... .
T Consensus 163 ~~-----~---------------------~~~~~~~~r~~ai~~i~~~l~~-~~iVV~~~G~~s~---el~~~~~~~~~~ 212 (361)
T TIGR03297 163 EP-----A---------------------NPLPTLMTREEAIAAILDHLPD-NTVIVSTTGKTSR---ELYELRDRIGQG 212 (361)
T ss_pred CC-----C---------------------CCCcCCCCHHHHHHHHHHhCCC-CCEEEECCCCCcH---HHHHhhcccccC
Confidence 00 0 0001137778889999999998 8888899997542 223322 2
Q ss_pred -CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCC-CeEEEEEeCCCchhhHHHHHHh
Q 040733 474 -ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENI-PVKILLINNQYLGMNVEYEDRY 551 (643)
Q Consensus 474 -p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~l-pv~ivV~NN~~~g~~~~~q~~~ 551 (643)
+++|++ +|+||+++|+|+|++++.|+++||+|+|||+|+|+++||+|+.++++ |+++||+||++|+++..
T Consensus 213 ~~~~f~~---~GsMG~a~p~AlG~ala~p~r~Vv~i~GDGsflm~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~----- 284 (361)
T TIGR03297 213 HARDFLT---VGSMGHASQIALGLALARPDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNGAHDSVGG----- 284 (361)
T ss_pred CCCceEe---echhhhHHHHHHHHHHHCCCCCEEEEEChHHHHHHHHHHHHHHHhCCCCeEEEEEcCccccccCC-----
Confidence 567775 38999999999999999999999999999999999999999999996 89999999999986531
Q ss_pred hcccccccccCCCCCCCCCCCCHHHHHhHCCC-CEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 552 FEANRANSFLGDPLRKSEIFPDMLKFAEACGI-PAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 552 ~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~-~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
.. + ....+||.++|++||. .+++|++.+||+++++++++.+||.||||+++++..
T Consensus 285 ---q~--~--------~~~~~d~~~iA~a~G~~~~~~v~~~~eL~~al~~a~~~~gp~lIeV~v~~g~~ 340 (361)
T TIGR03297 285 ---QP--T--------VSQHLDFAQIAKACGYAKVYEVSTLEELETALTAASSANGPRLIEVKVRPGSR 340 (361)
T ss_pred ---cC--C--------CCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHHhCCCcEEEEEEecCCCc
Confidence 00 0 1245899999999997 689999999999999999999999999999998763
No 76
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=100.00 E-value=5.4e-34 Score=275.05 Aligned_cols=174 Identities=22% Similarity=0.308 Sum_probs=155.8
Q ss_pred CCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc
Q 040733 433 EIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG 512 (643)
Q Consensus 433 ~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG 512 (643)
++++..+++.|++.+++ |.+++.|+|++. |..+++...++++|+.++++|+||+++|+|+|++++.|+++||+++|||
T Consensus 1 ~l~~~~~~~~l~~~l~~-~~iiv~d~g~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG 78 (183)
T cd02005 1 PLTQARLWQQVQNFLKP-NDILVAETGTSW-FGALDLKLPKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDG 78 (183)
T ss_pred CCCHHHHHHHHHHhcCC-CCEEEECCchHH-HhhhhccCCCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCc
Confidence 47889999999999999 999999999985 7888999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCC----CCEEEe
Q 040733 513 SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACG----IPAARV 588 (643)
Q Consensus 513 sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G----~~~~~V 588 (643)
+|+|+++||+|+++|++|+++||+||++|++++..+.. +.... ....+||.++|++|| +++.+|
T Consensus 79 ~f~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~----~~~~~--------~~~~~d~~~ia~a~G~~~~~~~~~v 146 (183)
T cd02005 79 SFQMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGP----EASYN--------DIANWNYTKLPEVFGGGGGGLSFRV 146 (183)
T ss_pred hhhccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccC----CcCcc--------cCCCCCHHHHHHHhCCCccccEEEe
Confidence 99999999999999999999999999999998755421 11111 123589999999999 799999
Q ss_pred CChhHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 040733 589 TKKKDVRAAIQLMLE-TPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 589 ~~~~eL~~al~~al~-~~gp~lIeV~v~~~~~~ 620 (643)
++.+||+++|+++++ .++|+||||.+++.++.
T Consensus 147 ~~~~el~~al~~a~~~~~~p~liev~~~~~~~~ 179 (183)
T cd02005 147 KTEGELDEALKDALFNRDKLSLIEVILPKDDAP 179 (183)
T ss_pred cCHHHHHHHHHHHHhcCCCcEEEEEEcCcccCC
Confidence 999999999999998 89999999999887643
No 77
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=100.00 E-value=6.9e-33 Score=267.05 Aligned_cols=177 Identities=29% Similarity=0.424 Sum_probs=156.0
Q ss_pred CCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc
Q 040733 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS 513 (643)
Q Consensus 434 i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs 513 (643)
++|.++++.|++.+++ +.+++.|+|++..|..++++.++|++++.+++ |+||+++|+|+|+++|.|+++||+++|||+
T Consensus 1 ~~~~~~~~~l~~~l~~-~~~iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG~ 78 (178)
T cd02002 1 LTPEYLAAALAAALPE-DAIIVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDGS 78 (178)
T ss_pred CCHHHHHHHHHhhCCC-CeEEEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCch
Confidence 4788999999999999 99999999999999999999989999999988 999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccc-cccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChh
Q 040733 514 FIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRAN-SFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKK 592 (643)
Q Consensus 514 f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~-~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~ 592 (643)
|+|+.+||+|++++++|+++||+||++|++++++|...++..... ..... ......+||.++|++||+++++|++++
T Consensus 79 f~~~~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~a~a~G~~~~~v~~~~ 156 (178)
T cd02002 79 FMYTIQALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGL--DLLDPGIDFAAIAKAFGVEAERVETPE 156 (178)
T ss_pred hhccHHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCccccccccc--ccCCCCCCHHHHHHHcCCceEEeCCHH
Confidence 999999999999999999999999999999998887655421000 00000 011245899999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEEe
Q 040733 593 DVRAAIQLMLETPGPYLLDVMV 614 (643)
Q Consensus 593 eL~~al~~al~~~gp~lIeV~v 614 (643)
||+++++++++.++|.||||++
T Consensus 157 el~~al~~a~~~~~p~vi~v~v 178 (178)
T cd02002 157 ELDEALREALAEGGPALIEVVV 178 (178)
T ss_pred HHHHHHHHHHhCCCCEEEEEEC
Confidence 9999999999999999999975
No 78
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=100.00 E-value=7.1e-33 Score=260.15 Aligned_cols=151 Identities=43% Similarity=0.659 Sum_probs=137.4
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++.+|..++++..+|++|+.+.++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 1 D~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~vv~ 80 (153)
T PF02775_consen 1 DIGCHTMWAAQYLRVRRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIVVL 80 (153)
T ss_dssp -SSHHHHHHHHHSCCSSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEEEE
T ss_pred CcChhHHHHHHhcCcCCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhhccceEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCCh--hHHHHHHHHHHhCCCcEEEEE
Q 040733 537 NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKK--KDVRAAIQLMLETPGPYLLDV 612 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~--~eL~~al~~al~~~gp~lIeV 612 (643)
||++|++++..|...+..+...... .....+||.++|++||+++++|++. +||+++|+++++.+||+||||
T Consensus 81 nN~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 81 NNGGYGMTGGQQTPFGGGRFSGVDG-----KTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALESGGPAVIEV 153 (153)
T ss_dssp ESSBSHHHHHHHHHTTSTCHHSTBT-----TTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred eCCcceEeccccccCcCcccccccc-----cccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHhCCCcEEEEc
Confidence 9999999999988877654433220 0146789999999999999999999 999999999999999999998
No 79
>PRK06163 hypothetical protein; Provisional
Probab=99.98 E-value=2.7e-31 Score=258.38 Aligned_cols=162 Identities=25% Similarity=0.437 Sum_probs=140.3
Q ss_pred CCCCHHHHHHHHHhcCCCCCeEEEeCCCh--hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe
Q 040733 432 EEIPPQYAIQILNELTDDEETIISTGVGQ--HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID 509 (643)
Q Consensus 432 ~~i~~~~~~~~L~~~l~~~d~iv~~d~G~--~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~ 509 (643)
-.++.+++++.|++.+++ +.+|++|+|+ +..|..+ ..+++++ .+|+|||++|+|+|+++|+|+++||+|+
T Consensus 11 ~~~~~~~~i~~l~~~l~~-~~~iv~D~G~~~~~~~~~~----~~~~~~~---~~GsMG~glpaAiGaalA~p~r~Vv~i~ 82 (202)
T PRK06163 11 KVMNRFDLTCRLVAKLKD-EEAVIGGIGNTNFDLWAAG----QRPQNFY---MLGSMGLAFPIALGVALAQPKRRVIALE 82 (202)
T ss_pred CCcCHHHHHHHHHHhcCC-CCEEEECCCccHHHHHHhh----cCCCCeE---eecccccHHHHHHHHHHhCCCCeEEEEE
Confidence 568899999999999998 7788899997 5688765 2455666 3799999999999999999999999999
Q ss_pred cCccccCCHHHHHHHHHh-CCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCC-EEE
Q 040733 510 GDGSFIMNLQELAAIKAE-NIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP-AAR 587 (643)
Q Consensus 510 GDGsf~m~~~eL~Ta~~~-~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~-~~~ 587 (643)
|||||+|+++||+|++++ ++|+++||+||++||+... + . .. ....+||+++|++||++ +++
T Consensus 83 GDG~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~-~------~----~~------~~~~~Df~~lA~a~G~~~~~~ 145 (202)
T PRK06163 83 GDGSLLMQLGALGTIAALAPKNLTIIVMDNGVYQITGG-Q------P----TL------TSQTVDVVAIARGAGLENSHW 145 (202)
T ss_pred cchHHHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcCC-c------c----CC------CCCCCCHHHHHHHCCCceEEE
Confidence 999999999999999987 6899999999999997521 0 0 00 12458999999999998 789
Q ss_pred eCChhHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 588 VTKKKDVRAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 588 V~~~~eL~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
|++.+||+++|+++++.++|.||||++++..
T Consensus 146 v~~~~el~~al~~a~~~~~p~lIeV~i~~~~ 176 (202)
T PRK06163 146 AADEAHFEALVDQALSGPGPSFIAVRIDDKP 176 (202)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 9999999999999999999999999998765
No 80
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=99.97 E-value=1.9e-31 Score=252.44 Aligned_cols=151 Identities=21% Similarity=0.238 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhh----C-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTR----S-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~----~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
|+|+|++.|+++||+++||+||+.+++++++|.+ . +|++|.+|||++|++||+||+|.+++ ||++|+|||++|
T Consensus 1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~--v~~~~~gpG~~n 78 (160)
T cd07034 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR--AMTATSGPGLNL 78 (160)
T ss_pred ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc--EEEeeCcchHHH
Confidence 5799999999999999999999999999999974 3 49999999999999999999998776 999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccC--CCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEE
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLG--TDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLI 224 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g--~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i 224 (643)
++++|++|+.+++|||+|+|+++....+ ...+|++|+..++++ +||++++.+++++++.+++||+.|.+++ |||+|
T Consensus 79 ~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~-~Pv~l 156 (160)
T cd07034 79 MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYR-LPVIV 156 (160)
T ss_pred HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence 9999999999999999999999988766 456788999999999 9999999999999999999999999998 89998
Q ss_pred Ec
Q 040733 225 DI 226 (643)
Q Consensus 225 ~i 226 (643)
-+
T Consensus 157 ~~ 158 (160)
T cd07034 157 LS 158 (160)
T ss_pred Ec
Confidence 64
No 81
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.97 E-value=3.8e-31 Score=248.39 Aligned_cols=154 Identities=22% Similarity=0.296 Sum_probs=135.6
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccC
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM 516 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m 516 (643)
..+++.|.+.+ + |.+|++|+|++..|. ++....|++|+. +|+||+++|+|+|++++.| ++||+|+|||||+|
T Consensus 2 ~~~~~~l~~~l-~-d~~vv~d~G~~~~~~--~~~~~~~~~~~~---~gsmG~~lp~AiGa~~a~~-~~Vv~i~GDG~f~m 73 (157)
T cd02001 2 IAAIAEIIEAS-G-DTPIVSTTGYASREL--YDVQDRDGHFYM---LGSMGLAGSIGLGLALGLS-RKVIVVDGDGSLLM 73 (157)
T ss_pred HHHHHHHHHhC-C-CCEEEeCCCHhHHHH--HHhhcCCCCEEe---ecchhhHHHHHHHHHhcCC-CcEEEEECchHHHh
Confidence 35788999999 6 889999999988877 444466788886 8999999999999999997 89999999999999
Q ss_pred CHHHHHHHHHh-CCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHH
Q 040733 517 NLQELAAIKAE-NIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVR 595 (643)
Q Consensus 517 ~~~eL~Ta~~~-~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~ 595 (643)
+++||+|+.++ ++|+++||+||++|+++.. | + . . ...+||.++|++||+++++|++++||+
T Consensus 74 ~~~el~t~~~~~~~~i~~vV~nN~~~g~~~~-~------~---~-~-------~~~~d~~~lA~a~G~~~~~v~~~~el~ 135 (157)
T cd02001 74 NPGVLLTAGEFTPLNLILVVLDNRAYGSTGG-Q------P---T-P-------SSNVNLEAWAAACGYLVLSAPLLGGLG 135 (157)
T ss_pred cccHHHHHHHhcCCCEEEEEEeCccccccCC-c------C---C-C-------CCCCCHHHHHHHCCCceEEcCCHHHHH
Confidence 99999999999 5999999999999998741 1 0 0 0 135899999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEeCC
Q 040733 596 AAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 596 ~al~~al~~~gp~lIeV~v~~ 616 (643)
++|+++++.++|.||||.+++
T Consensus 136 ~al~~a~~~~gp~vi~v~i~~ 156 (157)
T cd02001 136 SEFAGLLATTGPTLLHAPIAP 156 (157)
T ss_pred HHHHHHHhCCCCEEEEEEecC
Confidence 999999999999999999975
No 82
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.97 E-value=1.8e-30 Score=249.30 Aligned_cols=163 Identities=28% Similarity=0.464 Sum_probs=139.4
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccc-cCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcccc
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMWAIQFYMY-KRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFI 515 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~-~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~ 515 (643)
..+++.|++.++ |.++++|+|++.. .++.. +.+++++. +|+||+++|+|+|+++|+ +++||+|+|||+|+
T Consensus 2 ~~~~~~l~~~l~--d~iiv~d~G~~~~---~~~~~~~~~~~~~~---~gsmG~~lpaAiGa~la~-~~~Vv~i~GDG~f~ 72 (181)
T TIGR03846 2 IDAIRAIASYLE--DELVVSNIGVPSK---ELYAIRDRPLNFYM---LGSMGLASSIGLGLALAT-DRTVIVIDGDGSLL 72 (181)
T ss_pred HHHHHHHHHhCC--CCEEEecCCHhHH---HHHhhhcCCCCeee---ccccccHHHHHHHHHHcC-CCcEEEEEcchHHH
Confidence 357899999995 7899999998753 33333 46777775 799999999999999999 99999999999999
Q ss_pred CCHHHHHHHHHhC-CCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE-eCChhH
Q 040733 516 MNLQELAAIKAEN-IPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-VTKKKD 593 (643)
Q Consensus 516 m~~~eL~Ta~~~~-lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~-V~~~~e 593 (643)
|+++||+|+++++ +|+++||+||++||+++. |. ... ...+||.++|++||+++.+ |++++|
T Consensus 73 m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~-q~-------~~~---------~~~~d~~~lA~a~G~~~~~~v~~~~~ 135 (181)
T TIGR03846 73 MNLGVLPTIAAESPKNLILVILDNGAYGSTGN-QP-------TPA---------SRRTDLELVAKAAGIRNVEKVADEEE 135 (181)
T ss_pred hhhhHHHHHHHhCCCCeEEEEEeCCccccccC-cC-------CCC---------CCCCCHHHHHHHCCCCeEEEeCCHHH
Confidence 9999999999999 599999999999999852 10 000 1358999999999999999 999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEeCCCCCcccccCC
Q 040733 594 VRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPY 626 (643)
Q Consensus 594 L~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~ 626 (643)
|+++|+ +++.++|.||||.+++++...|+++.
T Consensus 136 l~~al~-a~~~~~p~li~v~~~~~~~~~p~~~~ 167 (181)
T TIGR03846 136 LRDALK-ALAMKGPTFIHVKVKPGNAKVPNIPL 167 (181)
T ss_pred HHHHHH-HHcCCCCEEEEEEeCCCCCCCCCCCC
Confidence 999997 88889999999999999887776664
No 83
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.97 E-value=1.6e-29 Score=237.59 Aligned_cols=153 Identities=29% Similarity=0.456 Sum_probs=145.7
Q ss_pred HHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH
Q 040733 74 DIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLM 152 (643)
Q Consensus 74 ~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~ 152 (643)
++|++.|+++||+++||+||+...++++++.+.+ ++++.++||++|++||+||+|.++ +++|++++|||++|+++++.
T Consensus 1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~-~~v~~~~~gpg~~~~~~~l~ 79 (154)
T cd06586 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSGTGLLNAINGLA 79 (154)
T ss_pred ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhC-CEEEEEcCCCcHHHHHHHHH
Confidence 4789999999999999999999999999998764 999999999999999999999999 99999999999999999999
Q ss_pred HhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 153 DAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 153 ~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+|+.+++|||+|+++++....+.+.+|+.|+..++++++||...+.++++....+.+|++.|.++ +|||+|++|.
T Consensus 80 ~a~~~~~Pvl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~-~gPv~l~ip~ 154 (154)
T cd06586 80 DAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYAS-QGPVVVRLPR 154 (154)
T ss_pred HHHhcCCCEEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEccC
Confidence 99999999999999999877777889999999999999999999999999999999999999988 7999999984
No 84
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.97 E-value=4.2e-29 Score=238.23 Aligned_cols=167 Identities=35% Similarity=0.592 Sum_probs=150.7
Q ss_pred HHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCH
Q 040733 439 AIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNL 518 (643)
Q Consensus 439 ~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~ 518 (643)
+++.|.+.+++ +.+++.|+|.+..|..+++....+.++..+.++|+||+++|+|+|++++.|+++||+++|||+|+|++
T Consensus 2 ~~~~l~~~~~~-~~~i~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~~~~~ 80 (168)
T cd00568 2 VLAALRAALPE-DAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMMTG 80 (168)
T ss_pred HHHHHHHHCCC-CCEEEeCCcHHHHHHHHheeeCCCCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHHhccH
Confidence 57788899988 88889999999999999988888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHH
Q 040733 519 QELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598 (643)
Q Consensus 519 ~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al 598 (643)
+||+|++++++|+++||+||++|++++..+...++.+.... ....+||.+++++||+++.+|++++|+++++
T Consensus 81 ~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~~a~~~G~~~~~v~~~~~l~~a~ 152 (168)
T cd00568 81 QELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGT--------DLSNPDFAALAEAYGAKGVRVEDPEDLEAAL 152 (168)
T ss_pred HHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccc--------cCCCCCHHHHHHHCCCeEEEECCHHHHHHHH
Confidence 99999999999999999999999999988776553322211 2356899999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEe
Q 040733 599 QLMLETPGPYLLDVMV 614 (643)
Q Consensus 599 ~~al~~~gp~lIeV~v 614 (643)
+++++.++|+||||++
T Consensus 153 ~~a~~~~~p~~i~v~~ 168 (168)
T cd00568 153 AEALAAGGPALIEVKT 168 (168)
T ss_pred HHHHhCCCCEEEEEEC
Confidence 9999999999999975
No 85
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.96 E-value=3.8e-30 Score=247.47 Aligned_cols=168 Identities=17% Similarity=0.240 Sum_probs=141.8
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEE
Q 040733 429 TFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDI 508 (643)
Q Consensus 429 ~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i 508 (643)
..+..+....+++.|++.+++ |.||+.|+|++.+|..+ +.+++ .++|+||+++|+|+|+++|.|+++||+|
T Consensus 5 ~~c~gc~~~~~~~~l~~~l~~-~~iv~~D~G~~~~~~~~------~~~~~--~~~g~mG~gl~~AiGa~la~p~~~Vv~i 75 (178)
T cd02008 5 GLCPGCPHRPSFYALRKAFKK-DSIVSGDIGCYTLGALP------PLNAI--DTCTCMGASIGVAIGMAKASEDKKVVAV 75 (178)
T ss_pred CcCCCCCChHHHHHHHHHhcC-CeEEecCcCcccccccC------Chhhc--cccccCccHHHHHhhHHhhCCCCCEEEE
Confidence 456788999999999999999 99999999999888742 23333 2589999999999999999999999999
Q ss_pred ecCccccCC-HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE
Q 040733 509 DGDGSFIMN-LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR 587 (643)
Q Consensus 509 ~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~ 587 (643)
+|||+|+|+ ++||+|++++++|+++||+||++|++++.++.. .. ..... .....+||+++|++||+++++
T Consensus 76 ~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~-~~-~~~~~-------~~~~~~d~~~~a~a~G~~~~~ 146 (178)
T cd02008 76 IGDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHP-GT-GKTLT-------EPTTVIDIEALVRAIGVKRVV 146 (178)
T ss_pred ecChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCC-CC-ccccc-------CCCCccCHHHHHHHCCCCEEE
Confidence 999999999 799999999999999999999999998754321 11 10000 112458999999999999999
Q ss_pred eCChhHHH---HHHHHHHhCCCcEEEEEEe
Q 040733 588 VTKKKDVR---AAIQLMLETPGPYLLDVMV 614 (643)
Q Consensus 588 V~~~~eL~---~al~~al~~~gp~lIeV~v 614 (643)
|++.+||+ ++|+++++.++|.||+|..
T Consensus 147 v~~~~~l~~~~~al~~a~~~~gp~lI~v~~ 176 (178)
T cd02008 147 VVDPYDLKAIREELKEALAVPGVSVIIAKR 176 (178)
T ss_pred ecCccCHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999988 8889999999999999975
No 86
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.96 E-value=1.7e-29 Score=244.16 Aligned_cols=159 Identities=26% Similarity=0.360 Sum_probs=136.4
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhcccc------CCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYK------RARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG 510 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~------~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G 510 (643)
..+++.|++.+|+ |.+++.|+|.+. .++++.. .|.+|+.+ |+|||++|+|+|++++.|+++||+|+|
T Consensus 2 ~~~~~~l~~~l~~-d~ivv~d~G~~~---~~~~~~~~~~~~~~~~~~~~~---g~mG~~lpaAiGaala~p~~~Vv~i~G 74 (188)
T cd03371 2 EDAIEIVLSRAPA-TAAVVSTTGMTS---RELFELRDRPGGGHAQDFLTV---GSMGHASQIALGIALARPDRKVVCIDG 74 (188)
T ss_pred HHHHHHHHhhcCC-CCEEEECCCcch---HHHHHhhcCCCCCccCceeec---CccccHHHHHHHHHHhCCCCcEEEEeC
Confidence 3578999999999 999999999754 3555554 33677764 899999999999999999999999999
Q ss_pred CccccCCHHHHHHHHHhCC-CeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCE-EEe
Q 040733 511 DGSFIMNLQELAAIKAENI-PVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPA-ARV 588 (643)
Q Consensus 511 DGsf~m~~~eL~Ta~~~~l-pv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~-~~V 588 (643)
||+|+|+++||+|++++++ |+++||+||++|++++. + . .. ...+||.++|++||+++ .+|
T Consensus 75 DG~f~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~-~-------~---~~-------~~~~d~~~~A~a~G~~~~~~v 136 (188)
T cd03371 75 DGAALMHMGGLATIGGLAPANLIHIVLNNGAHDSVGG-Q-------P---TV-------SFDVSLPAIAKACGYRAVYEV 136 (188)
T ss_pred CcHHHhhccHHHHHHHcCCCCcEEEEEeCchhhccCC-c-------C---CC-------CCCCCHHHHHHHcCCceEEec
Confidence 9999999999999999997 79999999999998631 0 0 01 23589999999999998 589
Q ss_pred CChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 589 TKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 589 ~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
++++||+++|+++++.++|+||||.+++.+..
T Consensus 137 ~~~~el~~al~~a~~~~~p~lIev~~~~~~~~ 168 (188)
T cd03371 137 PSLEELVAALAKALAADGPAFIEVKVRPGSRS 168 (188)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEEecCCCCC
Confidence 99999999999999999999999999988753
No 87
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.96 E-value=2.8e-29 Score=244.07 Aligned_cols=166 Identities=20% Similarity=0.263 Sum_probs=130.9
Q ss_pred HHHHHHHhc--CCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc-c
Q 040733 438 YAIQILNEL--TDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS-F 514 (643)
Q Consensus 438 ~~~~~L~~~--l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs-f 514 (643)
.+.+.+.++ .|+ |.++++|+|++ .|..++++. +..+|+||+++|+|+|+++|+|+|+||+|+|||| |
T Consensus 13 ~~~~~~~~~~~~~~-d~ii~~D~G~~-~~~~~~~~~--------~~~~g~mG~glpaAiGa~la~p~r~Vv~i~GDGs~f 82 (193)
T cd03375 13 ALAKALAELGIDPE-KVVVVSGIGCS-SRLPYYFNT--------YGFHTLHGRALAVATGVKLANPDLTVIVVSGDGDLA 82 (193)
T ss_pred HHHHHHHHhCCCCC-CEEEEeCCChh-ceehhhccc--------cchhhhhccHHHHHHHHHHhCCCCeEEEEeccchHh
Confidence 344445442 356 89999999987 466666543 2334899999999999999999999999999999 6
Q ss_pred cCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh-cccccccccCCCCCCCCCCCCHHHHHhHCCCCEE---EeCC
Q 040733 515 IMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF-EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA---RVTK 590 (643)
Q Consensus 515 ~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~-~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~---~V~~ 590 (643)
+|++|||+|++|+++|+++||+||++|++++.+|...+ ..+..... +.......+||.++|++||+++. +|++
T Consensus 83 ~m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~ 159 (193)
T cd03375 83 AIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTT---PYGNIEEPFNPLALALAAGATFVARGFSGD 159 (193)
T ss_pred hccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCC---CCCCCCCCCCHHHHHHHCCCCEEEEEecCC
Confidence 89999999999999999999999999999986654221 11111111 10111235899999999999985 7999
Q ss_pred hhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 591 KKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 591 ~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
++||+++|+++++.++|+||||.++=
T Consensus 160 ~~el~~al~~al~~~gp~vIev~~~C 185 (193)
T cd03375 160 IKQLKEIIKKAIQHKGFSFVEVLSPC 185 (193)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEECCC
Confidence 99999999999999999999999853
No 88
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.96 E-value=1.2e-29 Score=253.97 Aligned_cols=199 Identities=16% Similarity=0.142 Sum_probs=158.6
Q ss_pred CCCCCCHHHHHHHHHhcCC--CCCeEEEeCCChhHHHHHHhccccCCCeEEecC--CCcccccchHHHHHHHHh-----C
Q 040733 430 FGEEIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYMYKRARQLLTSS--GFGSMGFGLPAAMGAAVA-----N 500 (643)
Q Consensus 430 ~~~~i~~~~~~~~L~~~l~--~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~--~~g~mG~glpaAiGaalA-----~ 500 (643)
.+..+...-+++.|.+.++ + |.|++.|+|++..|+.+++....+.++..+. +.|+||+|+|+||||+++ .
T Consensus 7 ~c~gc~~~~~~~~l~~~l~~p~-d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~ 85 (237)
T cd02018 7 ACAGCGEVTAVRVVLAALPAPE-DTVIANSTGCSSVYASTAPFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELD 85 (237)
T ss_pred cCcCCCcHHHHHHHHHHhCCCC-CEEEEeCCCccceecccCcCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccccC
Confidence 3567888899999999998 8 9999999999999998875544556666653 559999999999999999 9
Q ss_pred CCCeEEEEecCcccc-CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHh--hcccccccccCCCCCCCCCCCCHHHH
Q 040733 501 PGAIVVDIDGDGSFI-MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRY--FEANRANSFLGDPLRKSEIFPDMLKF 577 (643)
Q Consensus 501 p~~~Vv~i~GDGsf~-m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~--~~~~~~~~~~g~p~~~~~~~~d~~~l 577 (643)
|+++||+|+|||+|+ |++++|+|+.++++|+++||+||++||++.. |... +..+... ..+.......+||+++
T Consensus 86 p~~~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~-q~~~~~~~g~~~~---~~~~~~~~~~~D~~~i 161 (237)
T cd02018 86 KKKDVVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGG-QRSGATPLGADSK---MAPAGKKEDKKDLVLI 161 (237)
T ss_pred CCCcEEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCccccCCCC-CCCCCCcCCCccc---ccCCCCcCCCCCHHHH
Confidence 999999999999998 7999999999999999999999999998752 2211 1111000 0111122456899999
Q ss_pred HhHCCCCEEE---eCChhHHHHHHHHHHh-CCCcEEEEEEeCCCCCcccccCCCcccccccc
Q 040733 578 AEACGIPAAR---VTKKKDVRAAIQLMLE-TPGPYLLDVMVSYQEHVVPMIPYDKSFKDTIL 635 (643)
Q Consensus 578 A~a~G~~~~~---V~~~~eL~~al~~al~-~~gp~lIeV~v~~~~~~~p~~~~~~~~~~~~~ 635 (643)
|++||+++++ |++++||+++|+++++ .+||+||||.++-.++ .+++++..++.+..
T Consensus 162 A~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v~i~c~~~--~~~~~~~~~~~~~~ 221 (237)
T cd02018 162 AATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHAYTPCITE--WGIGSGKSLELARK 221 (237)
T ss_pred HHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC--CCCCHHHHHHHHHH
Confidence 9999999986 9999999999999998 9999999999876543 24555555554443
No 89
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.96 E-value=1e-28 Score=237.13 Aligned_cols=162 Identities=28% Similarity=0.422 Sum_probs=137.1
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccC
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM 516 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m 516 (643)
..+++.|++.+| |.+|++|+|++..|...+ ...+.+++. +|+||+++|+|+|++++.| ++||+++|||+|+|
T Consensus 2 ~~~~~~l~~~~~--~~~vv~d~G~~~~~~~~~--~~~~~~~~~---~g~mG~~lp~AiGaala~~-~~vv~i~GDG~f~m 73 (179)
T cd03372 2 RDAIKTLIADLK--DELVVSNIGFPSKELYAA--GDRPLNFYM---LGSMGLASSIGLGLALAQP-RKVIVIDGDGSLLM 73 (179)
T ss_pred HHHHHHHHHhCC--CCeEEeCCCHhHHHHHHc--cCccccccc---ccchhhHHHHHHHHHhcCC-CcEEEEECCcHHHh
Confidence 467899999998 788889999987664443 134566663 7999999999999999998 89999999999999
Q ss_pred CHHHHHHHHHhCC-CeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC-ChhHH
Q 040733 517 NLQELAAIKAENI-PVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT-KKKDV 594 (643)
Q Consensus 517 ~~~eL~Ta~~~~l-pv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~-~~~eL 594 (643)
+++||+|++++++ |+++||+||++|+++.. |. .. ....+||.++|++||+++.+++ +.+||
T Consensus 74 ~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~-~~---------~~-------~~~~~d~~~lA~a~G~~~~~v~~~~~el 136 (179)
T cd03372 74 NLGALATIAAEKPKNLIIVVLDNGAYGSTGN-QP---------TH-------AGKKTDLEAVAKACGLDNVATVASEEAF 136 (179)
T ss_pred CHHHHHHHHHcCCCCEEEEEEcCccccccCC-CC---------CC-------CCCCCCHHHHHHHcCCCeEEecCCHHHH
Confidence 9999999999995 79999999999998731 10 00 1236899999999999999999 99999
Q ss_pred HHHHHHHHhCCCcEEEEEEeCCCCCcccccC
Q 040733 595 RAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625 (643)
Q Consensus 595 ~~al~~al~~~gp~lIeV~v~~~~~~~p~~~ 625 (643)
+++|++++ ++|.||||.+++++...|+.+
T Consensus 137 ~~al~~a~--~gp~lIev~~~~~~~~~~~~~ 165 (179)
T cd03372 137 EKAVEQAL--DGPSFIHVKIKPGNTDVPNIP 165 (179)
T ss_pred HHHHHHhc--CCCEEEEEEEcCCCCCCCCCC
Confidence 99999998 899999999999887766554
No 90
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.96 E-value=2.8e-29 Score=250.68 Aligned_cols=183 Identities=15% Similarity=0.142 Sum_probs=144.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHH----HhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeE
Q 040733 430 FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAI----QFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIV 505 (643)
Q Consensus 430 ~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~----~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~V 505 (643)
.+..+....+++.|++.+++ |.|++.|+|++..|.. ++++.+.+.+++.+ .++||+|+|+|||++++.|+++|
T Consensus 7 ~C~gC~~~~~~~~l~~~lp~-d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~~--~gsmG~GlpaAiGa~~a~p~r~V 83 (235)
T cd03376 7 ACAGCGAALALRHVLKALGP-DTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFEN--AAAVASGIEAALKALGRGKDITV 83 (235)
T ss_pred cCCCCccHHHHHHHHHHhhc-CeEEEeCCCcccccCCcCCCccccccceehhhcC--HHHHHHHHHHHHHHhccCCCCeE
Confidence 35678999999999999999 9999999999977543 33445555555544 37999999999999999999999
Q ss_pred EEEecCccc-cCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh---cccccccccCCCC-CCCCCCCCHHHHHhH
Q 040733 506 VDIDGDGSF-IMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF---EANRANSFLGDPL-RKSEIFPDMLKFAEA 580 (643)
Q Consensus 506 v~i~GDGsf-~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~---~~~~~~~~~g~p~-~~~~~~~d~~~lA~a 580 (643)
|+|+|||+| +|++|||+|++++++|+++||+||+.|||+.. |...+ +.+......+... ......+||.++|++
T Consensus 84 V~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~-q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a 162 (235)
T cd03376 84 VAFAGDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGI-QRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAA 162 (235)
T ss_pred EEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCC-CCCCCCCCCCEeecCCCCccccccccccCCHHHHHHH
Confidence 999999995 89999999999999999999999999998643 33221 1111000110000 001245899999999
Q ss_pred CCCCEE---EeCChhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 581 CGIPAA---RVTKKKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 581 ~G~~~~---~V~~~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
||++++ ++++++||+++|+++++.++|+||||.++=
T Consensus 163 ~G~~~~~~~~v~~~~el~~al~~a~~~~gP~lIev~~~C 201 (235)
T cd03376 163 HNIPYVATASVAYPEDLYKKVKKALSIEGPAYIHILSPC 201 (235)
T ss_pred cCCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 999985 599999999999999999999999999863
No 91
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.95 E-value=1.3e-27 Score=242.49 Aligned_cols=174 Identities=18% Similarity=0.239 Sum_probs=138.5
Q ss_pred CCCCHHHHHHHHHhc--CCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe
Q 040733 432 EEIPPQYAIQILNEL--TDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID 509 (643)
Q Consensus 432 ~~i~~~~~~~~L~~~--l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~ 509 (643)
..+.++.+++.|++. .++ +++|++|+|++..+. .+..+..++ ++||+++|+|+|+++|+|+++||+++
T Consensus 24 ~~i~~~~v~~al~e~~~~~~-d~ivvsdiGc~~~~~----~~~~~~~~~-----~~~G~alPaAiGaklA~Pdr~VV~i~ 93 (277)
T PRK09628 24 DGVILKSIIRAIDKLGWNMD-DVCVVSGIGCSGRFS----SYVNCNTVH-----TTHGRAVAYATGIKLANPDKHVIVVS 93 (277)
T ss_pred CchHHHHHHHHHHHhcCCCC-CEEEEeCcCHHHHhh----ccCCCCcee-----eccccHHHHHHHHHHHCCCCeEEEEE
Confidence 457889999999998 477 999999999874332 222333333 58999999999999999999999999
Q ss_pred cCccccC-CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE--
Q 040733 510 GDGSFIM-NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-- 586 (643)
Q Consensus 510 GDGsf~m-~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-- 586 (643)
|||+|+| +.+|+.|++|+|+|+++||+||+.|||++.++...+...... ...|......++||.++|++||+.++
T Consensus 94 GDG~f~~~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~--~~~~~g~~~~~~D~~~lA~a~G~~~va~ 171 (277)
T PRK09628 94 GDGDGLAIGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWT--VTAQYGNIDPTFDACKLATAAGASFVAR 171 (277)
T ss_pred CchHHHHhhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCcee--eeccCCCcCCCCCHHHHHHHCCCceEEE
Confidence 9999975 789999999999999999999999999975443322211000 01111111345799999999999984
Q ss_pred -EeCChhHHHHHHHHHHhCCCcEEEEEEeCCC
Q 040733 587 -RVTKKKDVRAAIQLMLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 587 -~V~~~~eL~~al~~al~~~gp~lIeV~v~~~ 617 (643)
+|++++||+++|+++++.+||+||||.++-.
T Consensus 172 ~~v~~~~el~~al~~Al~~~Gp~lIeV~~~c~ 203 (277)
T PRK09628 172 ESVIDPQKLEKLLVKGFSHKGFSFFDVFSNCH 203 (277)
T ss_pred EccCCHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 8999999999999999999999999999765
No 92
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.95 E-value=3.6e-27 Score=220.44 Aligned_cols=147 Identities=18% Similarity=0.239 Sum_probs=127.0
Q ss_pred HHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH
Q 040733 74 DIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLM 152 (643)
Q Consensus 74 ~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~ 152 (643)
|+|++.|+++||+++||+||+.+++|+++|.. +|++| .+|||+++++||++| |.+|+++||+.++|+| |++++|+
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~~-~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l~ 77 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIEK-DFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINALA 77 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHHh-CCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHHH
Confidence 68999999999999999999999999999953 49999 999999999999999 9999999999998877 9999999
Q ss_pred Hhh-hCCCCEEEEeCCCcc------cccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 153 DAY-SDSIPILAITGQVSQ------KLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 153 ~A~-~~~vPvlvItg~~~~------~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
+|+ .+++|||+|+|++.+ ...+++.+++. .+..+--+++.+.+++++ ..+++|++.|.+++ |||+|-
T Consensus 78 ~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~----~l~~~~i~~~~i~~~e~~-~~i~~A~~~a~~~~-gPv~il 151 (157)
T TIGR03845 78 SLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPK----LLDTLGIPYTIPREPEEA-KLIEKAISDAYENS-RPVAAL 151 (157)
T ss_pred HHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHH----HHHHcCCCeEEeCCHHHH-HHHHHHHHHHHhCC-CCEEEE
Confidence 999 999999999998887 55555555443 112222268899999999 99999999999998 999999
Q ss_pred cccch
Q 040733 226 IPVDV 230 (643)
Q Consensus 226 iP~Dv 230 (643)
++.++
T Consensus 152 ~~~~~ 156 (157)
T TIGR03845 152 LDPKY 156 (157)
T ss_pred EeCCc
Confidence 98764
No 93
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.94 E-value=6.2e-27 Score=239.16 Aligned_cols=173 Identities=17% Similarity=0.240 Sum_probs=140.7
Q ss_pred CCCCCCCHHHHHHHHHhcC------CCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCC-cccccchHHHHHHHHhCC
Q 040733 429 TFGEEIPPQYAIQILNELT------DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF-GSMGFGLPAAMGAAVANP 501 (643)
Q Consensus 429 ~~~~~i~~~~~~~~L~~~l------~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~-g~mG~glpaAiGaalA~p 501 (643)
..+..+....+++.|.+.+ |+ |.++++|+|++..|. .|+.+.++ |+||+++|+|+|+++|+|
T Consensus 18 ~~CpGCg~~~il~~l~~al~~l~~~p~-d~vvvsdiGc~~~~~----------~~~~~~~~~g~mG~alpaAiGaklA~P 86 (286)
T PRK11867 18 RWCPGCGDGSILAALQRALAELGLDPE-NVAVVSGIGCSGRLP----------GYINTYGFHTIHGRALAIATGLKLANP 86 (286)
T ss_pred CcCCCCCCHHHHHHHHHHHHHhCCCCC-cEEEEeCCccccccC----------ccccccchhhhhhcHHHHHHHHHHhCC
Confidence 3577888888999999988 66 999999999886432 24455555 999999999999999999
Q ss_pred CCeEEEEecCcc-ccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHh--hcccccccccCCCCCCCCCCCCHHHHH
Q 040733 502 GAIVVDIDGDGS-FIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRY--FEANRANSFLGDPLRKSEIFPDMLKFA 578 (643)
Q Consensus 502 ~~~Vv~i~GDGs-f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~--~~~~~~~~~~g~p~~~~~~~~d~~~lA 578 (643)
+++||+++|||+ |+|+++||+|++|+|+|+++||+||++|||++.++... ++.......+|+ ....+||.++|
T Consensus 87 d~~VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~----~~~~~d~~~lA 162 (286)
T PRK11867 87 DLTVIVVTGDGDALAIGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGS----IEPPFNPVELA 162 (286)
T ss_pred CCcEEEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCC----CCCCCCHHHHH
Confidence 999999999995 99999999999999999999999999999998543221 111111111222 12357999999
Q ss_pred hHCCCCEEE---eCChhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 579 EACGIPAAR---VTKKKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 579 ~a~G~~~~~---V~~~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
+++|+.++. +.+++||+++|+++++.+||+||||.++=
T Consensus 163 ~a~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lIev~~~C 203 (286)
T PRK11867 163 LGAGATFVARGFDSDVKQLTELIKAAINHKGFSFVEILQPC 203 (286)
T ss_pred HHCCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 999998874 67899999999999999999999999853
No 94
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.94 E-value=2.4e-26 Score=235.70 Aligned_cols=169 Identities=21% Similarity=0.237 Sum_probs=134.7
Q ss_pred CCCHHHHHHHHHhc-C-CCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec
Q 040733 433 EIPPQYAIQILNEL-T-DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG 510 (643)
Q Consensus 433 ~i~~~~~~~~L~~~-l-~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G 510 (643)
.+-...+++.|.++ + |+ |.++++|+|++. |...|+. .++.+|+||+++|+|+|+++|+|+++||+|+|
T Consensus 27 ~~i~~~i~~al~~l~l~p~-d~vivsdiG~s~-~~~~yl~--------~~~~~g~mG~alpaAiGaklA~pd~~VV~i~G 96 (301)
T PRK05778 27 FGILNAIIQALAELGLDPD-KVVVVSGIGCSS-KIPGYFL--------SHGLHTLHGRAIAFATGAKLANPDLEVIVVGG 96 (301)
T ss_pred hHHHHHHHHHHHHhcCCCC-CEEEEeCCcHhh-hhhhhcc--------cCccchhhccHHHHHHHHHHHCCCCcEEEEeC
Confidence 45556777888887 4 66 999999999975 3333433 22334899999999999999999999999999
Q ss_pred Cccc-cCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHh--hcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-
Q 040733 511 DGSF-IMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRY--FEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA- 586 (643)
Q Consensus 511 DGsf-~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~--~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~- 586 (643)
||+| +|+++||+|++|+|+|+++||+||++||+++.++... ++........|. ....+||.++|+++|+.++
T Consensus 97 DG~~~~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~----~~~~~d~~~lA~a~G~~~va 172 (301)
T PRK05778 97 DGDLASIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGN----IEPPIDPCALALAAGATFVA 172 (301)
T ss_pred ccHHHhccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCC----cCCCCCHHHHHHHCCCCEEE
Confidence 9998 5999999999999999999999999999998644321 111111111111 1245899999999999987
Q ss_pred --EeCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 587 --RVTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 587 --~V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
++.+++||+++|+++++.+||+||||.++
T Consensus 173 ~~~v~~~~eL~~ai~~A~~~~GpalIeV~~~ 203 (301)
T PRK05778 173 RSFAGDVKQLVELIKKAISHKGFAFIDVLSP 203 (301)
T ss_pred EeccCCHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 79999999999999999999999999875
No 95
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.94 E-value=6e-26 Score=229.97 Aligned_cols=173 Identities=20% Similarity=0.244 Sum_probs=141.6
Q ss_pred CCCCCCCHHHHHHHHHhcC------CCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCC
Q 040733 429 TFGEEIPPQYAIQILNELT------DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPG 502 (643)
Q Consensus 429 ~~~~~i~~~~~~~~L~~~l------~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~ 502 (643)
..+..+....++..|++.+ ++ +.++++|+|++. |...+++.. ..+++||+++|+|+|+++|+|+
T Consensus 8 ~~CpGCg~~~il~al~~al~~l~~~~~-~~ivvsdiGc~~-~~~~~~~~~--------~~~~~~G~alp~A~GaklA~Pd 77 (279)
T PRK11866 8 IWCPGCGNYGILEALRKALAELGIPPE-NVVVVSGIGCSS-NLPEFLNTY--------GIHGIHGRVLPIATGVKWANPK 77 (279)
T ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCC-CEEEEECCchhh-hhhhhccCC--------CcccccccHHHHHHHHHHHCCC
Confidence 4567788888888888777 56 899999999987 666665432 2368999999999999999999
Q ss_pred CeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc--ccccccccCCCCCCCCCCCCHHHHHh
Q 040733 503 AIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE--ANRANSFLGDPLRKSEIFPDMLKFAE 579 (643)
Q Consensus 503 ~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~--~~~~~~~~g~p~~~~~~~~d~~~lA~ 579 (643)
++||+++||| +|+|++|||.|++|+|+|+++||+||+.|||++.++...++ .+...+.+|++ ....||.++|+
T Consensus 78 ~~VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~----~~~~d~~~iA~ 153 (279)
T PRK11866 78 LTVIGYGGDGDGYGIGLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNI----EEPFNPIALAL 153 (279)
T ss_pred CcEEEEECChHHHHccHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCC----CCCCCHHHHHH
Confidence 9999999999 79999999999999999999999999999999855544332 22222222221 22359999999
Q ss_pred HCCCCEEEe---CChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 580 ACGIPAARV---TKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 580 a~G~~~~~V---~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
++|+.++.. .++++|+++|+++++.+||.||||..+
T Consensus 154 a~G~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~v~~p 192 (279)
T PRK11866 154 AAGATFVARGFSGDVKHLKEIIKEAIKHKGFSFIDVLSP 192 (279)
T ss_pred HCCCCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 999987766 888999999999999999999999975
No 96
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.94 E-value=9.1e-26 Score=228.48 Aligned_cols=174 Identities=16% Similarity=0.162 Sum_probs=134.5
Q ss_pred CCCCCCHHHHHHHHHhc------CCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCC
Q 040733 430 FGEEIPPQYAIQILNEL------TDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGA 503 (643)
Q Consensus 430 ~~~~i~~~~~~~~L~~~------l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~ 503 (643)
.+..+....++..+.+. +|+ |.++++|+|++..| ..|+.. .+..+.||+++|+|+|+++|+|++
T Consensus 10 ~CpGCg~~~i~~~~~~a~~~l~~~p~-d~ivvsdiG~~~~~-~~~~~~--------~~~~~~mG~alp~AiGaklA~pd~ 79 (280)
T PRK11869 10 WCPGCGNFGIRNALMKALSELNLKPR-QVVIVSGIGQAAKM-PHYINV--------NGFHTLHGRAIPAATAVKATNPEL 79 (280)
T ss_pred CCcCCCCHHHHHHHHHHHHHcCCCCC-CEEEEeCchHhhhH-HHHccC--------CCCCcccccHHHHHHHHHHHCCCC
Confidence 35556666555555443 366 89999999998775 344332 244578999999999999999999
Q ss_pred eEEEEecCccccCC-HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCC
Q 040733 504 IVVDIDGDGSFIMN-LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACG 582 (643)
Q Consensus 504 ~Vv~i~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G 582 (643)
+||+++|||+|+|. +|||+||+|+|+|+++||+||++|||++.++........... ..|.......+||.++|+++|
T Consensus 80 ~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~--~~p~g~~~~~~D~~~lA~a~G 157 (280)
T PRK11869 80 TVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTP--TQPWGVFEEPFNPIALAIALD 157 (280)
T ss_pred cEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccc--cCCCCccCCCCCHHHHHHHCC
Confidence 99999999999976 999999999999999999999999999854432111000000 012111234579999999999
Q ss_pred CCEEE---eCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 583 IPAAR---VTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 583 ~~~~~---V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
++++. +.+++||+++|++|++.+||+||||.++
T Consensus 158 ~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lIeV~~p 193 (280)
T PRK11869 158 ASFVARTFSGDIEETKEILKEAIKHKGLAIVDIFQP 193 (280)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 99998 7899999999999999999999999985
No 97
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=99.93 E-value=1e-25 Score=207.57 Aligned_cols=134 Identities=38% Similarity=0.591 Sum_probs=122.4
Q ss_pred HHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCE
Q 040733 261 LRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDL 338 (643)
Q Consensus 261 i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDl 338 (643)
+++++++|++||||+|++|.|+. ++.+++++|+|++|+||++|+++||+||++||+|+|.+|..++..+++++++||+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDl 80 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADL 80 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSE
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCE
Confidence 57899999999999999999998 7899999999999999999999999999999999998899999999999999999
Q ss_pred EEEecCccCccccC-ccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHH
Q 040733 339 LLAAGVRFNERMTS-KLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRM 394 (643)
Q Consensus 339 vL~vG~~~~~~~t~-~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L 394 (643)
||++|++++++.+. .+..|.++.++||||.|+.++++++++++.|++|++.+|++|
T Consensus 81 vl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 81 VLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp EEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred EEEECCCCccccccccccccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 99999999987664 344566666999999999999999999999999999999876
No 98
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.93 E-value=3.1e-25 Score=225.40 Aligned_cols=155 Identities=20% Similarity=0.340 Sum_probs=123.8
Q ss_pred CCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCC-cccccchHHHHHHHHhCCCCeEEEEecCcccc-CCHHHHHHHH
Q 040733 448 DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF-GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFI-MNLQELAAIK 525 (643)
Q Consensus 448 ~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~-g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~-m~~~eL~Ta~ 525 (643)
++ |.++++|+|++. ..+ +|+.+.++ +.||+++|+|+|+++|+|+++||+++|||+|+ |+++||+||+
T Consensus 27 p~-d~iivsdiGc~~---------~~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f~~mg~~eL~tA~ 95 (287)
T TIGR02177 27 PE-QVVVVSGIGCSA---------KTP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDLYGIGGNHFVAAG 95 (287)
T ss_pred CC-CEEEEECCCccc---------ccC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHHHhccHHHHHHHH
Confidence 55 899999999874 123 45555555 56899999999999999999999999999986 9999999999
Q ss_pred HhCCCeEEEEEeCCCchhhHHHHHHh--hcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE-eCChhHHHHHHHHHH
Q 040733 526 AENIPVKILLINNQYLGMNVEYEDRY--FEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-VTKKKDVRAAIQLML 602 (643)
Q Consensus 526 ~~~lpv~ivV~NN~~~g~~~~~q~~~--~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~-V~~~~eL~~al~~al 602 (643)
|+|+|+++||+||+.|||++.++... ++........|+. ....++++.++|+++|..+.. +.++++|+++|++|+
T Consensus 96 r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~--~~~~np~~~a~A~g~g~va~~~~~~~~eL~~ai~~Al 173 (287)
T TIGR02177 96 RRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNI--QDPVNPLLLAIALGYTFVARGFSGDVAHLKEIIKEAI 173 (287)
T ss_pred HhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCcc--CCCCCHHHHHHhCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 99999999999999999999665422 1111111111111 012367899999999988776 699999999999999
Q ss_pred hCCCcEEEEEEeC
Q 040733 603 ETPGPYLLDVMVS 615 (643)
Q Consensus 603 ~~~gp~lIeV~v~ 615 (643)
+.+||+||||.++
T Consensus 174 ~~~GpslIeV~~p 186 (287)
T TIGR02177 174 NHKGYALVDILQP 186 (287)
T ss_pred hCCCCEEEEEeCC
Confidence 9999999999975
No 99
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.85 E-value=1.7e-19 Score=194.16 Aligned_cols=489 Identities=14% Similarity=0.114 Sum_probs=288.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-----CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-----NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPG 143 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-----~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG 143 (643)
-+.|.++|++.+.+.||.++-||||+.+.+|.+.|.+. ++.+-+..||..|..+|.|-+...-|-.+.+.|.|.
T Consensus 15 ~llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGl- 93 (640)
T COG4231 15 LLLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAGASYAGVRALVTMKHVGL- 93 (640)
T ss_pred HhccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHHhhhcCceeeEEeccccc-
Confidence 35799999999999999999999999999999999764 278899999999999999966655566666666553
Q ss_pred hHHHHHHHHHhhhCCC--CEEEEeCCCcccccCCCCCCccCHHHHhhcc-ceeeeEeCCcCcHHHHHHHHHHHhhcCCCC
Q 040733 144 VTNIMTGLMDAYSDSI--PILAITGQVSQKLLGTDAFQEIPVVEVTRYM-TKHNYLVLDVDDIPRIIKEAFFIATSGRPG 220 (643)
Q Consensus 144 ~~N~~~gl~~A~~~~v--PvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~-tk~~~~v~~~~~i~~~l~~A~~~A~s~~~G 220 (643)
-=+.-.+..+.+.++ -+|+|+||.|..+..+.. |+. +.|... --+..+..++.++.+.+..||.++..-. -
T Consensus 94 -NvAsDpl~s~ay~Gv~GGlviv~aDDpg~~SSqne-qds---r~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~-~ 167 (640)
T COG4231 94 -NVASDPLMSLAYAGVTGGLVIVVADDPGMHSSQNE-QDS---RAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSG-L 167 (640)
T ss_pred -ccchhhhhhhhhcCccccEEEEEccCCCcccccch-hHh---HHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhC-C
Confidence 223334444444333 299999999976655544 322 333333 3367778889999999999999987543 6
Q ss_pred eEEEEcccchhhhccCCCCC----C--------CCCCCCCCCCCCCCC---C----HHHHHHHHHHHHhCC---------
Q 040733 221 PVLIDIPVDVQLELAVPNWN----Q--------PCKLPSCISSLPKEP---D----ELALRQTLKLIVESK--------- 272 (643)
Q Consensus 221 PV~i~iP~Dv~~~~~~~~~~----~--------~~~~p~~~~~~~~~~---~----~~~i~~~~~~L~~Ak--------- 272 (643)
||-|..-.++.......... + ..+.+......|..+ . ...+.++.+.+++.+
T Consensus 168 pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~ 247 (640)
T COG4231 168 PVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDD 247 (640)
T ss_pred CEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCC
Confidence 88887776664322100000 0 001111110111111 0 112333444444221
Q ss_pred -CcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCcccc
Q 040733 273 -NPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT 351 (643)
Q Consensus 273 -rPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t 351 (643)
+--|++.+. +...+++-.+.+|+-.. =+-+|+.-.........+++.-+-||++...-+ ++-
T Consensus 248 ~~lGII~~G~---ay~yVkeAl~~lgl~~~-------------~lklg~~~Plp~~~i~~F~~g~~~vlVVEE~~P-~iE 310 (640)
T COG4231 248 AKLGIIASGI---AYNYVKEALEDLGLDDE-------------LLKLGTPYPLPEQLIENFLKGLERVLVVEEGEP-FIE 310 (640)
T ss_pred CceEEEecCc---cHHHHHHHHHHcCCCce-------------eEEecCCcCCCHHHHHHHHhcCcEEEEEecCCc-hHH
Confidence 222333332 23334444455554321 011222222233345566777777777754422 111
Q ss_pred Ccccccc-CCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccc
Q 040733 352 SKLEDFA-TRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYK 428 (643)
Q Consensus 352 ~~~~~~~-~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 428 (643)
.....+. ....-+.| .||. ..-+... -+...++.+|.+.+......... .-..+..+.....+.+.+
T Consensus 311 ~qv~~~l~~~g~~v~v------~GKd-~gllP~~GElt~~~i~~ai~~~l~~~~~~s~~---~~~~~~~~~~~~~~~RpP 380 (640)
T COG4231 311 EQVKALLYDAGLPVEV------HGKD-EGLLPMEGELTPEKIANAIAKFLGKEGSPSYE---SIVAEVRKAAVLIPPRPP 380 (640)
T ss_pred HHHHHHHHhcCCceEe------eccc-ccccCcccccCHHHHHHHHHHHhCccCCcccc---cchhhhhcccccCCCCCC
Confidence 1111111 00000111 1111 0011122 25567777777776653211111 111122222222333334
Q ss_pred CCCCCCCHHHHHHHHHhcCCCC--CeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEE
Q 040733 429 TFGEEIPPQYAIQILNELTDDE--ETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVV 506 (643)
Q Consensus 429 ~~~~~i~~~~~~~~L~~~l~~~--d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv 506 (643)
..+..+++...+..++....+- .. .+|+|++.+ ....|...... .-.||.+++.|-|+..+.+ +++|
T Consensus 381 ~lC~GCPHr~sf~~~k~~~~~~~~~~--~~DIGCytl------g~~~P~~~~d~--t~~mGssig~a~g~~~~~~-k~~v 449 (640)
T COG4231 381 ALCPGCPHRPSFYALKKAAAELGGHP--SGDIGCYTL------GILPPLNTVDT--TTMMGSSIGIAGGLSFAST-KKIV 449 (640)
T ss_pred cCCCCCCCchhhHHHHHHHHhhCCCC--CCCcceeec------ccCCCcchhhh--hhhccchhhhccccccccC-CceE
Confidence 5566777777776666654220 22 678997643 33334333322 2468888999999988775 8899
Q ss_pred EEecCccccCC-HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCE
Q 040733 507 DIDGDGSFIMN-LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPA 585 (643)
Q Consensus 507 ~i~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~ 585 (643)
+++|||+|.|+ ++.|.+|+..+.+++++|++|..-+|..+++....+ ....|++ ....+.+.+++++|+..
T Consensus 450 a~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~----~~~~g~~----~~~i~iee~~r~~Gv~~ 521 (640)
T COG4231 450 AVIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTG----VAAEGTK----STAIVIEEVVRAMGVED 521 (640)
T ss_pred EEeccccccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcc----cccCCCc----cceeEhhHhhhhcCcee
Confidence 99999999998 888999999999999999999998887544332111 0111221 34579999999999988
Q ss_pred EEeC---ChhHHHHHHHHHHhCCCcEEE
Q 040733 586 ARVT---KKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 586 ~~V~---~~~eL~~al~~al~~~gp~lI 610 (643)
+++- +.+++.++++++++..||.||
T Consensus 522 v~~vdp~~~~~~~~~~keale~~gpsVi 549 (640)
T COG4231 522 VETVDPYDVKELSEAIKEALEVPGPSVI 549 (640)
T ss_pred eeccCCcchHHHHHHHHHHhcCCCceEE
Confidence 7654 568899999999999998876
No 100
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.77 E-value=1.8e-16 Score=185.71 Aligned_cols=484 Identities=19% Similarity=0.134 Sum_probs=286.2
Q ss_pred CCcHHHHHHHHHHH-------CCC---CEEEEccCCCcHHHHHHHhhC-------CCeEEecCChhHHHHHHHHHHH---
Q 040733 69 PRKGADIIVEALER-------QGV---TTVFAYPGGASIEIHQSLTRS-------NIRSILPRHEQGGIFAAEGYAR--- 128 (643)
Q Consensus 69 ~~~~a~~lv~~L~~-------~GV---~~vFg~PG~~~~~l~~al~~~-------~i~~i~~~hE~~A~~~A~Gyar--- 128 (643)
-++|.|+|++.+.+ .|+ ..|-||||+.+.++.+.|.+. +|.+.+..||..|+-+|.|--+
T Consensus 27 ~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~~ 106 (1165)
T PRK09193 27 FLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVNL 106 (1165)
T ss_pred eeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhccccc
Confidence 57999999999998 999 999999999999999999653 3999999999999999966633
Q ss_pred -----HhCCcEEEEEccchhhHHHHHHHHHhhhCCC----CEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCC
Q 040733 129 -----SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSI----PILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLD 199 (643)
Q Consensus 129 -----~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~v----PvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~ 199 (643)
..|.-+++. -=|||+-=+.-.+..|...++ -||+|+||.|.....+..+|. +...++..+ ......+
T Consensus 107 ~~~a~~~Gv~~l~y-~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~SSq~eqdS-r~~~~~a~i--Pvl~Ps~ 182 (1165)
T PRK09193 107 FPGAKYDGVFGMWY-GKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKSSTLPHQS-EHAFKAAGM--PVLFPAN 182 (1165)
T ss_pred ccceeeccceEEEe-cCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCccccchhhh-HHHHHHcCC--ceeCCCC
Confidence 345444443 346888777778877766666 699999999987666555443 333222222 3556678
Q ss_pred cCcHHHHHHHHHHHhhcCCCCeEEEEcccchhhhccCCCCCC---CCCCCC-C---C----CCCCCCCCH-------HHH
Q 040733 200 VDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQ---PCKLPS-C---I----SSLPKEPDE-------LAL 261 (643)
Q Consensus 200 ~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~~~~~~~~~~~---~~~~p~-~---~----~~~~~~~~~-------~~i 261 (643)
++++.+....||.++..-. -||-+-.-.++........... ....|. + . .+.+..|.. ..+
T Consensus 183 ~qE~~d~~~~g~~lSr~~g-~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~g~~~r~~~~p~~~~~~~~~~rl 261 (1165)
T PRK09193 183 VQEILDYGLHGWAMSRYSG-LWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPDPPLEQEARLLDYKL 261 (1165)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccCCcccccccCCCCcHHHHHHHHHHHH
Confidence 8889999999999987533 5887777666543321100000 000110 0 0 011111111 122
Q ss_pred HHHHHHHHhCC-----------CcEEEEcCCchhhHHHHHHHHHHh----------CCceeecCCCCCCCCCCCCCcccc
Q 040733 262 RQTLKLIVESK-----------NPVLCVGGGCLNSSEELRKFVGLT----------GIPVTCTTMGLGLFPCTDELCLRM 320 (643)
Q Consensus 262 ~~~~~~L~~Ak-----------rPvIl~G~g~~~~~~~l~~lae~l----------g~PV~tt~~gkg~~~~~hpl~lG~ 320 (643)
..+.+.....+ |--||+.+ .+...+++-.+.+ |++++ -+|+
T Consensus 262 ~a~~a~a~~n~ln~~~~~~~~~~iGIItsG---~~y~~v~eal~~lg~~~~~~~~~gi~il---------------Kvgm 323 (1165)
T PRK09193 262 YAALAYARANKLDRVVIDSPNARLGIVAAG---KAYLDVRQALRDLGLDEETAARLGIRLY---------------KVGM 323 (1165)
T ss_pred HHHHHHHHhCCCCeeecCCCCCCEEEEecC---ccHHHHHHHHHHcCCChhhhcccCCCEE---------------EeCC
Confidence 23333222111 11122211 1223333333434 44443 2444
Q ss_pred cCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCC---CCeeEec--CHHHHHHHHH
Q 040733 321 VGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKL---PDVSICA--DAKLVFNRMN 395 (643)
Q Consensus 321 ~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~---~~~~i~~--D~~~~L~~L~ 395 (643)
.-........++.+..|-||+|...-+-.-. .+....-+ ...++.|..+||.-. .-+...+ |+..+.+.|.
T Consensus 324 ~~PL~~~~i~~Fa~g~~~vlVVEE~~p~iE~-qlk~~l~~---~~~~~rp~v~GK~~~~g~~llp~~gEl~~~~va~~l~ 399 (1165)
T PRK09193 324 VWPLEPQGVRAFAEGLDEILVVEEKRQIIEY-QLKEELYN---WPDDVRPRVIGKFDPQGNWLLPAHGELSPAIIAKAIA 399 (1165)
T ss_pred CCCCCHHHHHHHHhcCCEEEEEecCchHHHH-HHHHHHhh---ccCCcCceeEeeeCCCCCccCCCcCCcCHHHHHHHHH
Confidence 3344455677889999999999866431111 11100000 001111223344211 1122223 4455555555
Q ss_pred HHHhhcCCC--CCCChh---HHHHHHHHH---HHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHH
Q 040733 396 MILESKGVG--FMFDFS---AWREELHEQ---KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQ 467 (643)
Q Consensus 396 ~~l~~~~~~--~~~~~~---~w~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~ 467 (643)
..+...... ...... .|.+..... ....+...+..+..|++....+ +|+ +.++..|+|+|.+-.
T Consensus 400 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~P~fCsGCPH~~st~-----vp~-gs~~~~dIGChtl~~-- 471 (1165)
T PRK09193 400 RRLLKLELPGDVRARIAARLAVLEAKEAALALPRVTAARTPYFCSGCPHNTSTR-----VPE-GSRALAGIGCHYMAT-- 471 (1165)
T ss_pred HHhhhcccccccchhhhhcccccccccccccccccCCCCCCCcCCCCCCcccee-----cCC-CCEEecCcChhhhcc--
Confidence 444321100 000000 111111000 0111223344567777776544 376 889999999886532
Q ss_pred hccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 468 FYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 468 ~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
+. |+.. ..+-.||..+..++|.+....+++||.++|||.|+|+ +..|..++..+.+++++|+.|+.-+|...
T Consensus 472 ~~----p~~~---~~~~~MG~eg~~~~G~a~f~~~~hv~a~iGDgTffHSG~~al~~AV~~~~nit~~IL~N~~vAMTGg 544 (1165)
T PRK09193 472 WM----DRNT---STFTQMGGEGVPWIGQAPFTDEKHVFQNLGDGTYFHSGLLAIRAAVAAGVNITYKILYNDAVAMTGG 544 (1165)
T ss_pred CC----CCCC---CeeeccCCcchhhceeccccCCCcEEEEeccccchhcCHHHHHHHHhcCCCeEEEEEeCCcccccCC
Confidence 11 2221 3346799999999998887777999999999999997 88899999999999999999999888642
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHH-----------------HHHHHHHH-hCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDV-----------------RAAIQLML-ETPG 606 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL-----------------~~al~~al-~~~g 606 (643)
++. .| ....+++++++++.|++.+.+- ++.++ .+++++.+ +.+|
T Consensus 545 Q~~-----------~g-----~~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~G 608 (1165)
T PRK09193 545 QPV-----------DG-----GLSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPG 608 (1165)
T ss_pred CCC-----------CC-----CcchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCC
Confidence 111 01 1245799999999999988775 55554 35566666 6778
Q ss_pred cEEE
Q 040733 607 PYLL 610 (643)
Q Consensus 607 p~lI 610 (643)
++||
T Consensus 609 vsVi 612 (1165)
T PRK09193 609 VTVL 612 (1165)
T ss_pred cEEE
Confidence 7765
No 101
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.75 E-value=1.1e-15 Score=179.74 Aligned_cols=489 Identities=16% Similarity=0.135 Sum_probs=285.5
Q ss_pred CCcHHHHHHHHHHH-------CCC---CEEEEccCCCcHHHHHHHhhC-------CCeEEecCChhHHHHHHHHHHHHh-
Q 040733 69 PRKGADIIVEALER-------QGV---TTVFAYPGGASIEIHQSLTRS-------NIRSILPRHEQGGIFAAEGYARSS- 130 (643)
Q Consensus 69 ~~~~a~~lv~~L~~-------~GV---~~vFg~PG~~~~~l~~al~~~-------~i~~i~~~hE~~A~~~A~Gyar~s- 130 (643)
-++|.|+|++.+.+ .|+ ..|-||||+.+.++.+.|.+. +|.+.+..||..|+-+|.|-+++.
T Consensus 19 ~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~~ 98 (1159)
T PRK13030 19 FLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQVEA 98 (1159)
T ss_pred eeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhccccc
Confidence 57999999999999 999 999999999999999999653 399999999999999999999443
Q ss_pred -------CCcEEEEEccchhhHHHHHHHHHhhhCCC----CEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCC
Q 040733 131 -------GTPGVCLVSSGPGVTNIMTGLMDAYSDSI----PILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLD 199 (643)
Q Consensus 131 -------g~~gv~~~t~GpG~~N~~~gl~~A~~~~v----PvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~ 199 (643)
|.-+++ .-=|||+-=+.-++..+.+.++ -||+|+||.|.....+..+| .+...++..+ ......+
T Consensus 99 ~~~~~~~Gv~~l~-~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~SSq~eqd-Sr~~~~~a~i--Pvl~Ps~ 174 (1159)
T PRK13030 99 DPERTVDGVFAMW-YGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSSSMPHQ-SDFALIAWHM--PVLNPAN 174 (1159)
T ss_pred cCCccccceEEEE-ecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCccCcCHHH-HHHHHHHcCC--ceeCCCC
Confidence 332333 2346887777778887777766 69999999997766655433 2333333222 4566778
Q ss_pred cCcHHHHHHHHHHHhhcCCCCeEEEEcccchhhhccCCCCCC---CCCCCC-CC-------CCCCCCCCH-------HHH
Q 040733 200 VDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQ---PCKLPS-CI-------SSLPKEPDE-------LAL 261 (643)
Q Consensus 200 ~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~~~~~~~~~~~---~~~~p~-~~-------~~~~~~~~~-------~~i 261 (643)
++++.+....||.++..-. -||-+-.-.++........... ....|. +. .+.+..|.. +.+
T Consensus 175 ~qE~~d~~~~a~~lSr~~~-~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~~~~~rl 253 (1159)
T PRK13030 175 VQEYLDFGLYGWALSRYSG-AWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEARLAAKL 253 (1159)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHHHHHHHHHH
Confidence 8899999999999987533 5787777666543321100000 000110 10 011111111 123
Q ss_pred HHHHHHHHhCCCcEEEE-cC----Cch---hhHHHHHHHHHHhCC-ceeecCCCCCCCCCCCCCcccccCCCCcHHHHHh
Q 040733 262 RQTLKLIVESKNPVLCV-GG----GCL---NSSEELRKFVGLTGI-PVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYA 332 (643)
Q Consensus 262 ~~~~~~L~~AkrPvIl~-G~----g~~---~~~~~l~~lae~lg~-PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~ 332 (643)
..+.+.-...+-+-+.. |. |.. .+...+++-.+.+|+ .......|..+ +-+|+.-.+......++
T Consensus 254 ~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgiri------lKvgm~~PL~~~~i~~F 327 (1159)
T PRK13030 254 PAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRI------YKVGLSWPLEPTRLREF 327 (1159)
T ss_pred HHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccE------EEeCCccCCCHHHHHHH
Confidence 33333222122111111 11 111 133444444455555 21111122111 22344223344557788
Q ss_pred hhcCCEEEEecCccC---ccccCccccccC--CceEEEEcCCcccccCCCCCCeeEec--CHHHHHHHHHHHHhhcCCCC
Q 040733 333 VNECDLLLAAGVRFN---ERMTSKLEDFAT--RAKIVHIDIDSNEIGKVKLPDVSICA--DAKLVFNRMNMILESKGVGF 405 (643)
Q Consensus 333 l~~aDlvL~vG~~~~---~~~t~~~~~~~~--~~~iI~Id~d~~~i~~~~~~~~~i~~--D~~~~L~~L~~~l~~~~~~~ 405 (643)
++..|-||+|...-+ ..+..-+..+.. ..+++-..... |. +-+...+ ++..+.+.|...+.....
T Consensus 328 ~~g~d~VlVVEE~~p~iE~Qlk~~l~~~~~~~~~~v~GK~~~~---G~---pllp~~gEl~~~~v~~~l~~~l~~~~~-- 399 (1159)
T PRK13030 328 ADGLEEILVIEEKRPVIEQQIKDYLYNRPGGARPRVVGKHDED---GA---PLLSELGELRPSLIAPVLAARLARHKP-- 399 (1159)
T ss_pred HhcCCEEEEEeCCchHHHHHHHHHHHhccccCCceeEEEECCC---CC---cCCCCcCCcCHHHHHHHHHHHHhccCc--
Confidence 999999999987644 111100000111 11232221100 10 1122223 334444555444432110
Q ss_pred CCChhHHH-HHHHHH----HHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEec
Q 040733 406 MFDFSAWR-EELHEQ----KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTS 480 (643)
Q Consensus 406 ~~~~~~w~-~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~ 480 (643)
......|. ...... ....+...+..+..|++.... .+++ +.++..|+|++.+-... .+ . .
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~R~P~~C~GCPH~~s~-----k~~~-~~~~~gdIGC~tl~~~~---~~-~-----~ 464 (1159)
T PRK13030 400 ALDRRARVVDLVAPQILSNEADAVVRTPYFCSGCPHNTST-----KVPE-GSIAQAGIGCHFMASWM---DR-D-----T 464 (1159)
T ss_pred cchhhhccccccccccccccccCCCCCCCcCCCCCCchhh-----ccCC-CCEeecCcCHHHHhhcc---cc-c-----c
Confidence 11111121 100000 011222334556777776665 3345 78999999998764422 11 1 1
Q ss_pred CCCcccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccccccc
Q 040733 481 SGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANS 559 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~ 559 (643)
..+-.||.++..++|.+-...+++||.++|||.|+|+ +..|..++..+.+++++|++|+.-+|...++.
T Consensus 465 ~~~~~MG~~g~~~~G~a~~~~~~~v~a~iGDgTf~HSG~~al~~AV~~~~nit~~IL~N~~tAMTGgQp~---------- 534 (1159)
T PRK13030 465 TGLTQMGGEGVDWIGHAPFTETKHVFQNLGDGTYFHSGSLAIRQAVAAGANITYKILYNDAVAMTGGQPV---------- 534 (1159)
T ss_pred ceeeccCccchhhceeccccCCCCEEEEeccchhhhcCHHHHHHHHhcCCCeEEEEEeCCcccccCCCCC----------
Confidence 2346799999999999888778899999999999997 88999999999999999999999888632110
Q ss_pred ccCCCCCCCCCCCCHHH---HHhHCCCCEEEeC--ChhH----------------HHHHHHHHH-hCCCcEEE
Q 040733 560 FLGDPLRKSEIFPDMLK---FAEACGIPAARVT--KKKD----------------VRAAIQLML-ETPGPYLL 610 (643)
Q Consensus 560 ~~g~p~~~~~~~~d~~~---lA~a~G~~~~~V~--~~~e----------------L~~al~~al-~~~gp~lI 610 (643)
...++..+ ++++.|++.+.|. ++.+ ..+++++++ +.+|++||
T Consensus 535 ---------~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsVi 598 (1159)
T PRK13030 535 ---------DGSISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVL 598 (1159)
T ss_pred ---------CCCCCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEE
Confidence 12356777 7779999888775 4433 345666667 67787765
No 102
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.71 E-value=4.8e-17 Score=165.53 Aligned_cols=121 Identities=21% Similarity=0.215 Sum_probs=105.1
Q ss_pred CCcccccchHHHHHHHHhCC----CCeEEEEecCccccC--CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccc
Q 040733 482 GFGSMGFGLPAAMGAAVANP----GAIVVDIDGDGSFIM--NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEAN 555 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p----~~~Vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 555 (643)
..|+||+++|+|+|++++.+ +++|++|+|||+|++ +.++|.++.++++|.+++|+||++|++.....
T Consensus 103 ~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~------- 175 (255)
T cd02012 103 TTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTD------- 175 (255)
T ss_pred CCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHh-------
Confidence 34999999999999999865 899999999999998 58999999999999999999999998643211
Q ss_pred ccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHhC-CCcEEEEEEeCCCCCc
Q 040733 556 RANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLET-PGPYLLDVMVSYQEHV 620 (643)
Q Consensus 556 ~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~~-~gp~lIeV~v~~~~~~ 620 (643)
. .....||.+++++||+++++|+ +.++|.++++++.+. ++|++|+|.+.+....
T Consensus 176 ---~--------~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~t~kg~g~ 232 (255)
T cd02012 176 ---D--------ILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAKTIKGKGV 232 (255)
T ss_pred ---h--------ccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEEeeccccc
Confidence 0 1235799999999999999999 999999999999876 8999999999887754
No 103
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.70 E-value=9.6e-15 Score=170.87 Aligned_cols=484 Identities=17% Similarity=0.132 Sum_probs=278.9
Q ss_pred CCcHHHHHHHHH-------HHCCCC---EEEEccCCCcHHHHHHHhhC-------CCeEEecCChhHHHHHHHHHHHHh-
Q 040733 69 PRKGADIIVEAL-------ERQGVT---TVFAYPGGASIEIHQSLTRS-------NIRSILPRHEQGGIFAAEGYARSS- 130 (643)
Q Consensus 69 ~~~~a~~lv~~L-------~~~GV~---~vFg~PG~~~~~l~~al~~~-------~i~~i~~~hE~~A~~~A~Gyar~s- 130 (643)
-++|.|+|++.+ .+.|++ .|-||||+.+.++.++|.+. +|.+.+..||..|+-|..|--++-
T Consensus 30 ~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gsq~~e~ 109 (1186)
T PRK13029 30 YISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGSQQLEL 109 (1186)
T ss_pred eecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhhhhccc
Confidence 479999999999 999999 99999999999999999653 399999999999998888877642
Q ss_pred -------CCcEEEEEccchhhHHHHHHHHHhh--hCCC--CEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCC
Q 040733 131 -------GTPGVCLVSSGPGVTNIMTGLMDAY--SDSI--PILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLD 199 (643)
Q Consensus 131 -------g~~gv~~~t~GpG~~N~~~gl~~A~--~~~v--PvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~ 199 (643)
|.-+++ .-=|||+-=+.-.+..+. ..++ -||+|+||.|.....+..+|. +...++.. -......+
T Consensus 110 ~~~a~~dGv~~lw-ygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SSq~eqdS-r~~~~~a~--iPvl~Ps~ 185 (1186)
T PRK13029 110 DPGAKRDGVFGMW-YGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSSSVAHQS-DHTFIAWG--IPVLYPAS 185 (1186)
T ss_pred ccceeeccceEEE-ecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccccCHHHH-HHHHHHcC--CceeCCCC
Confidence 322332 234588766666776444 3322 399999999987666555443 33222222 23556677
Q ss_pred cCcHHHHHHHHHHHhhcCCCCeEEEEcccchhhhccCCCCCC-C--CCCCC-CC-------CCCCCCCCH-------HHH
Q 040733 200 VDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQ-P--CKLPS-CI-------SSLPKEPDE-------LAL 261 (643)
Q Consensus 200 ~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~~~~~~~~~~~-~--~~~p~-~~-------~~~~~~~~~-------~~i 261 (643)
++++.+....||.++..-. -||-+-.-.++.......+... . ...|. +. .+.+..|.. ..+
T Consensus 186 ~qE~~d~~~~a~~lSr~~g-~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~~~g~~~r~~~~p~~~e~~~~~~kl 264 (1186)
T PRK13029 186 VQDYLDYGLHGWAMSRYSG-LWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLPPGGLHIRWPDDPLAQEERMLEFKW 264 (1186)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCEEEEEeeeeeecceeeecCCcccccCCcccccCCccccccccCCCcHHHHHHHHHHHH
Confidence 8888999999999987533 5888877766654432111000 0 01111 10 011111111 122
Q ss_pred HHHHHHHHhCC-CcEEEEcC----Cch---hhHHHHHHHHHHhC----------CceeecCCCCCCCCCCCCCcccccCC
Q 040733 262 RQTLKLIVESK-NPVLCVGG----GCL---NSSEELRKFVGLTG----------IPVTCTTMGLGLFPCTDELCLRMVGM 323 (643)
Q Consensus 262 ~~~~~~L~~Ak-rPvIl~G~----g~~---~~~~~l~~lae~lg----------~PV~tt~~gkg~~~~~hpl~lG~~g~ 323 (643)
..+.+.....+ +-+.+-|. |+. .+...+++..+.+| ++++ -+|+.-.
T Consensus 265 ~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~il---------------Kvgm~~P 329 (1186)
T PRK13029 265 YAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIRLL---------------KVGCVWP 329 (1186)
T ss_pred HHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCCEE---------------EeCCCCC
Confidence 23333222111 11111121 111 12333344334444 4443 2444334
Q ss_pred CCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCC--------------CCCeeEec--CH
Q 040733 324 FGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVK--------------LPDVSICA--DA 387 (643)
Q Consensus 324 ~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~--------------~~~~~i~~--D~ 387 (643)
.......++.+..|-||+|...-+-.-. .+....-+ ...+..|..+||.- ..-+...+ |+
T Consensus 330 L~~~~i~~Fa~g~d~vlVVEE~~p~iE~-qlk~~l~~---~~~~~rp~v~GK~~~~~~~~~~~~~~~g~~llp~~gEL~p 405 (1186)
T PRK13029 330 LDPQSVREFAQGLEEVLVVEEKRAVIEY-QLKEELYN---WREDVRPAIFGKFDHRDGAGGEWSVPAGRWLLPAHAELSP 405 (1186)
T ss_pred CCHHHHHHHHhcCCEEEEEecCchHHHH-HHHHHHhh---ccCCcCCeeEecccccccccccccccccCCCCCcccCcCH
Confidence 4455678889999999999866331110 00000000 00011112223321 01222333 44
Q ss_pred HHHHHHHHHHHhhcCCCC--CC---ChhHHHHHHHHH---HHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCC
Q 040733 388 KLVFNRMNMILESKGVGF--MF---DFSAWREELHEQ---KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVG 459 (643)
Q Consensus 388 ~~~L~~L~~~l~~~~~~~--~~---~~~~w~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G 459 (643)
..+...|...+....... .. ....|....... ....+...+..+..|++....+. ++ +.++..|+|
T Consensus 406 ~~va~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~R~P~fCsGCPH~~st~~-----~~-gs~~~~dIG 479 (1186)
T PRK13029 406 ALIAKAIARRLAALGLPADVAARMDARVADIEAKERAAAQPRLLTERKPWFCSGCPHNTSTRV-----PE-GSRALAGIG 479 (1186)
T ss_pred HHHHHHHHHHHHhcCCCcccchhhhhhhhhcccccccccccccCCCCCCCcCCCCCCchhhcc-----CC-CCEEecCcC
Confidence 555555655553311100 00 001121111100 00112223455677777765444 55 788999999
Q ss_pred hhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHHHHhCCCeEEEEEeC
Q 040733 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKAENIPVKILLINN 538 (643)
Q Consensus 460 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN 538 (643)
+|.+-... .+. ..++-.||..+..++|.+-...+++||.++|||.|+|+ +..|..++..+.+++++|+.|
T Consensus 480 Chtl~~~~---~~~------~~~~~~MGgeg~~~~G~a~f~~~~hv~aniGDgTffHSG~~alr~AV~~~~nit~kIL~N 550 (1186)
T PRK13029 480 CHYMAMWM---DRS------TEGFSQMGGEGVAWIGQMPFSRRRHVFQNLGDGTYFHSGLLAIRQAIAAGVNITYKILYN 550 (1186)
T ss_pred HHHHhhcc---ccc------cceeeccCcchhhheeecccCCCCCEEEEeccccchhcCHHHHHHHHhcCCCEEEEEEeC
Confidence 98764322 111 12346799999999999887777899999999999998 888999999999999999999
Q ss_pred CCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHH---HHhHCCCCEEEeCC--hhHH-----------------HH
Q 040733 539 QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLK---FAEACGIPAARVTK--KKDV-----------------RA 596 (643)
Q Consensus 539 ~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~---lA~a~G~~~~~V~~--~~eL-----------------~~ 596 (643)
+.-+|...++. ....+..+ +.++.|++.+.|-+ +.++ .+
T Consensus 551 ~avAMTGgQp~-------------------~G~~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~ 611 (1186)
T PRK13029 551 DAVAMTGGQPV-------------------DGVLTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELD 611 (1186)
T ss_pred cchhccCCCCC-------------------CCcCCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHH
Confidence 98888632110 12345666 67999998887755 4333 45
Q ss_pred HHHHHH-hCCCcEEE
Q 040733 597 AIQLML-ETPGPYLL 610 (643)
Q Consensus 597 al~~al-~~~gp~lI 610 (643)
++++.+ +.+|++||
T Consensus 612 ~vq~~lr~~~GvsVi 626 (1186)
T PRK13029 612 AVQRELREVPGVSVL 626 (1186)
T ss_pred HHHHHHhcCCCcEEE
Confidence 556666 67787665
No 104
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.70 E-value=7.3e-17 Score=170.24 Aligned_cols=119 Identities=23% Similarity=0.255 Sum_probs=99.8
Q ss_pred CCCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 481 SGFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
+..++||+++|.|+|++++. |++.||+++|||+|+|+ .++|.||.++++|+++||+||+ |++....+.
T Consensus 119 g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~-~~~~~~~~~----- 192 (341)
T TIGR03181 119 PPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQ-WAISVPRSK----- 192 (341)
T ss_pred CCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCC-Cccccchhh-----
Confidence 34478999999999999886 89999999999999998 5789999999999999999997 664321111
Q ss_pred cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHH------HHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV------RAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL------~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
....+||.++|++||+++++|+..+++ +++++++.+.++|+||||.+.+..
T Consensus 193 -------------~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~ 249 (341)
T TIGR03181 193 -------------QTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLG 249 (341)
T ss_pred -------------hhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCC
Confidence 013479999999999999999999886 888888888899999999998753
No 105
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.69 E-value=1.4e-16 Score=165.41 Aligned_cols=119 Identities=25% Similarity=0.280 Sum_probs=98.7
Q ss_pred CCCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC-H-HHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 481 SGFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN-L-QELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
++.|+||+++|.|+|+++|. +++.||+++|||+|+|+ + ++|.++.++++|+++||.||+ |++....+..
T Consensus 101 ~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~-~~i~~~~~~~---- 175 (293)
T cd02000 101 GGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNG-YAISTPTSRQ---- 175 (293)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCC-eeccCCHHHH----
Confidence 34589999999999999885 78999999999999987 3 679999999999999999995 9986543321
Q ss_pred cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCC--hhHHHHHHHHHH----hCCCcEEEEEEeCCCC
Q 040733 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK--KKDVRAAIQLML----ETPGPYLLDVMVSYQE 618 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~--~~eL~~al~~al----~~~gp~lIeV~v~~~~ 618 (643)
...+||.++|++||+++++|+. ++++.+++++++ +.++|+||||.+++..
T Consensus 176 --------------~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~ 231 (293)
T cd02000 176 --------------TAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLG 231 (293)
T ss_pred --------------hCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccC
Confidence 1347999999999999999974 567777777766 4679999999998764
No 106
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.68 E-value=1.7e-16 Score=165.77 Aligned_cols=118 Identities=27% Similarity=0.380 Sum_probs=97.7
Q ss_pred CCCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 481 SGFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
+++|+||+++|.|+|+++|. +++.||+++|||+|++. ..+|.++.++++|+++||+||+ |++....+..
T Consensus 107 ~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~-yg~s~~~~~~---- 181 (315)
T TIGR03182 107 GGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNL-YAMGTSVERS---- 181 (315)
T ss_pred cCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCC-ccccCCHHHH----
Confidence 45699999999999999997 78999999999999876 3669999999999999999995 9987654321
Q ss_pred cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChh--HH----HHHHHHHHhCCCcEEEEEEeCCC
Q 040733 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKK--DV----RAAIQLMLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~--eL----~~al~~al~~~gp~lIeV~v~~~ 617 (643)
...+||.++|++||+++++|+..+ ++ +.+++++.+.++|+||||.+.+-
T Consensus 182 --------------~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 236 (315)
T TIGR03182 182 --------------SSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRF 236 (315)
T ss_pred --------------hCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcC
Confidence 134799999999999999998754 44 45555555678999999999765
No 107
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.65 E-value=5.7e-16 Score=163.03 Aligned_cols=118 Identities=27% Similarity=0.421 Sum_probs=98.1
Q ss_pred CCCcccccchHHHHHHHHhC-----------CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCC-CchhhHH
Q 040733 481 SGFGSMGFGLPAAMGAAVAN-----------PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQ-YLGMNVE 546 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~-----------p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~-~~g~~~~ 546 (643)
+++|+||+++|.|+|+++|. |++.||+++|||+|+.. ..+|.+|.++++|+++||.||+ ++++...
T Consensus 125 ~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~ 204 (341)
T CHL00149 125 GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHH 204 (341)
T ss_pred CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchh
Confidence 46799999999999999993 78999999999999743 2369999999999999999999 5665421
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHH------HHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV------RAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL------~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
.+ ...+||.++|++||+++++|+..+.+ +.+++++.+.++|+||||.+.+-.
T Consensus 205 ~~--------------------~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~ 262 (341)
T CHL00149 205 RS--------------------TSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFR 262 (341)
T ss_pred he--------------------eCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCC
Confidence 10 12479999999999999999988764 678888888899999999997653
No 108
>PRK05899 transketolase; Reviewed
Probab=99.59 E-value=1.9e-15 Score=172.60 Aligned_cols=119 Identities=20% Similarity=0.249 Sum_probs=104.4
Q ss_pred CcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCCH-HH-HHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMNL-QE-LAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~~-~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
.|+||+++|+|+|++++.+ +++|++++|||+|+++. +| |.||.++++|.+++|+||++|++...
T Consensus 117 ~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~ 196 (624)
T PRK05899 117 TGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGP 196 (624)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccc
Confidence 6999999999999999976 78999999999999984 55 99999999999999999999987531
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
.. . ...+||.+++++||+++++|+ +.++|.++++++.+.++|+||+|.+.+....
T Consensus 197 ---------~~-~---------~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v~t~kg~g~ 253 (624)
T PRK05899 197 ---------TE-G---------WFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIAKTIIGKGA 253 (624)
T ss_pred ---------cc-c---------cccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEEEeEeccCC
Confidence 00 0 124799999999999999999 9999999999999888999999999876544
No 109
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.51 E-value=8.4e-14 Score=149.89 Aligned_cols=118 Identities=25% Similarity=0.360 Sum_probs=96.3
Q ss_pred CCCcccccchHHHHHHHHh-----------CCCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCC-CchhhHH
Q 040733 481 SGFGSMGFGLPAAMGAAVA-----------NPGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQ-YLGMNVE 546 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA-----------~p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~-~~g~~~~ 546 (643)
++++.||+++|.|+|+++| .+++.||+++|||++... ..+|.+|..+++|+++||.||+ ++++...
T Consensus 191 g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~ 270 (433)
T PLN02374 191 GGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 270 (433)
T ss_pred CCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceee
Confidence 5678999999999999998 367899999999999865 4579999999999999999988 4444210
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHH------HHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV------RAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL------~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
. . ...+|+.+.|++||+++++|+..+.+ +++++++.+.++|+|||+.+.+..
T Consensus 271 ~----------~----------t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~ 328 (433)
T PLN02374 271 R----------A----------TSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 328 (433)
T ss_pred e----------c----------cCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecC
Confidence 0 0 13479999999999999999877755 577777777899999999996653
No 110
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.51 E-value=2.1e-13 Score=139.37 Aligned_cols=179 Identities=17% Similarity=0.131 Sum_probs=133.4
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHh----CCCCeE
Q 040733 430 FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVA----NPGAIV 505 (643)
Q Consensus 430 ~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA----~p~~~V 505 (643)
.+..+....+++.|.+.+.+ +.|++.|+|+...|+..+.. . | |-.....+.||-+.+.|.|.+.| .++++|
T Consensus 20 ~C~GCg~~~~~~~l~~a~g~-~~vi~~~iGC~s~~~~~~p~-~-~--~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~V 94 (299)
T PRK11865 20 ACAGCGAAIAMRLALKALGK-NTVIVVATGCLEVITTPYPE-T-A--WNVPWIHVAFENAAAVASGIERAVKALGKKVNV 94 (299)
T ss_pred CCcCCCcHHHHHHHHHHcCC-CEEEEeCCCcccccCccCcC-C-c--cccccchhhhcchHHHHHHHHHHHHHhcCCCeE
Confidence 46779999999999999987 99999999998776433211 1 1 11122347788899999998877 456789
Q ss_pred EEEecCccccC-CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC-----CCCCCCHHHHHh
Q 040733 506 VDIDGDGSFIM-NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK-----SEIFPDMLKFAE 579 (643)
Q Consensus 506 v~i~GDGsf~m-~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~-----~~~~~d~~~lA~ 579 (643)
|++.|||+|.. .++.|..+.+.+.++++||+||+.|++...+.....+.... +.+ .|... .....|+..+|.
T Consensus 95 v~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~-t~t-sp~Gk~~~G~~~~kkd~~~Ia~ 172 (299)
T PRK11865 95 VAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGAS-TTT-SPAGKYSRGEDRPKKNMPLIMA 172 (299)
T ss_pred EEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcc-ccc-CCCCcccCCCCCCCCCHHHHHH
Confidence 99999999876 58999999999999999999999999875332211110000 000 11111 234679999999
Q ss_pred HCCCCEE---EeCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 580 ACGIPAA---RVTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 580 a~G~~~~---~V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
++|+.|+ .+.++.++.+++++|++.+||.+|+|..+
T Consensus 173 a~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I~v~sP 211 (299)
T PRK11865 173 AHGIPYVATASIGYPEDFMEKVKKAKEVEGPAYIQVLQP 211 (299)
T ss_pred HcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 9999887 45788999999999999999999999864
No 111
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.44 E-value=9.7e-13 Score=134.37 Aligned_cols=178 Identities=14% Similarity=0.086 Sum_probs=130.2
Q ss_pred CCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhC-----CCCeE
Q 040733 431 GEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVAN-----PGAIV 505 (643)
Q Consensus 431 ~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~-----p~~~V 505 (643)
+..+...-.++.+.+.+.+ +.|++.|+|+.......+ ++. .+-.+.....||.+++.|.|++.|. ++..|
T Consensus 21 C~GCG~~~~~~~l~~~lg~-~~v~~~~iGC~~~~~g~~-p~~---~~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~V 95 (300)
T PRK11864 21 CPGCGAPLGLRYLLKALGE-KTVLVIPASCSTVIQGDT-PKS---PLTVPVLHTAFAATAAVASGIEEALKARGEKGVIV 95 (300)
T ss_pred CCCCCCHHHHHHHHHHhCC-CeEEEeCCCccceecCCC-Ccc---cccccceeehhhChHHHHHHHHHHHHhhCCCCcEE
Confidence 4567777788899998887 899999999875432221 211 1222333478999999999999984 45678
Q ss_pred EEEecCccccC-CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCC
Q 040733 506 VDIDGDGSFIM-NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP 584 (643)
Q Consensus 506 v~i~GDGsf~m-~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~ 584 (643)
+++.|||++.. .++.|..|.+.++|+++||.||+.|++...+.....+.... +. -.|........|..+++.++|+.
T Consensus 96 va~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~-t~-tsp~G~~~~kkdi~~i~~a~g~~ 173 (300)
T PRK11864 96 VGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAW-TT-TTPGGKREHKKPVPDIMAAHKVP 173 (300)
T ss_pred EEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCc-cc-cCCCCCcCCCCCHHHHHHHcCCC
Confidence 88999999876 58889999999999999999999999875432221111100 00 01222234567999999999998
Q ss_pred EE---EeCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 585 AA---RVTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 585 ~~---~V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
++ .+.++.++.+++++|++.+||.+|++..+
T Consensus 174 yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~~~sp 207 (300)
T PRK11864 174 YVATASIAYPEDFIRKLKKAKEIRGFKFIHLLAP 207 (300)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 87 34577899999999999999999999864
No 112
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=99.41 E-value=8.9e-13 Score=123.35 Aligned_cols=104 Identities=23% Similarity=0.259 Sum_probs=86.8
Q ss_pred HHHHHHHHHhCCCcEEEEcCCchh---hHHHHHHHHHHhCCceeecCC------CCCCCCCCCCCcccccCCCCcHHHHH
Q 040733 261 LRQTLKLIVESKNPVLCVGGGCLN---SSEELRKFVGLTGIPVTCTTM------GLGLFPCTDELCLRMVGMFGTVYANY 331 (643)
Q Consensus 261 i~~~~~~L~~AkrPvIl~G~g~~~---~~~~l~~lae~lg~PV~tt~~------gkg~~~~~hpl~lG~~g~~~~~~~~~ 331 (643)
-++++++|++||||+|++|.|+.. +.+++.+|+|++++||++|++ +||++|+ |+++|.+|..++....+
T Consensus 24 p~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~--~~~lg~lg~~~~~p~~e 101 (171)
T PRK00945 24 PKIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK--YINLHELTNYLKDPNWK 101 (171)
T ss_pred HHHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC--cccHHHHHhhccCchhh
Confidence 467889999999999999999965 567899999999999999998 8999998 99999999999888888
Q ss_pred hh---hcCCEEEEecCccCc--cccCccccccCCceEEEEc
Q 040733 332 AV---NECDLLLAAGVRFNE--RMTSKLEDFATRAKIVHID 367 (643)
Q Consensus 332 ~l---~~aDlvL~vG~~~~~--~~t~~~~~~~~~~~iI~Id 367 (643)
.+ .++|+||.+|+++.- +.-..+..|.+ .|.|.|+
T Consensus 102 ~~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~-~~~~~~~ 141 (171)
T PRK00945 102 GLDGNGNYDLVIFIGVTYYYASQGLSALKHFSP-LKTITID 141 (171)
T ss_pred hhcCCCCcCEEEEecCCchhHHHHHHHHhhcCC-ceEEEec
Confidence 88 799999999999852 22222334555 6777765
No 113
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=99.40 E-value=8.5e-13 Score=122.70 Aligned_cols=104 Identities=26% Similarity=0.367 Sum_probs=86.4
Q ss_pred HHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCC------CCCCCCCCCCcccccCCCCcHHHHHh
Q 040733 261 LRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMG------LGLFPCTDELCLRMVGMFGTVYANYA 332 (643)
Q Consensus 261 i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~g------kg~~~~~hpl~lG~~g~~~~~~~~~~ 332 (643)
-++++++|++||||+|++|.|+. ++.+++++|+|++|+||++|+++ ||++ +||.++|.+|..++....+.
T Consensus 17 p~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~--~~~~~lg~~g~~~~~p~~e~ 94 (162)
T TIGR00315 17 PKLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIE--SEEMNLHEITQFLADPSWEG 94 (162)
T ss_pred HHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCee--cCCCCHHHHHHhccCchhhh
Confidence 46788999999999999999997 78899999999999999999988 9999 68899999998888888899
Q ss_pred h---hcCCEEEEecCccC--ccccCccccccCCceEEEEc
Q 040733 333 V---NECDLLLAAGVRFN--ERMTSKLEDFATRAKIVHID 367 (643)
Q Consensus 333 l---~~aDlvL~vG~~~~--~~~t~~~~~~~~~~~iI~Id 367 (643)
+ .++|+||.+|+++. ++.-..+..|. +.|.|.||
T Consensus 95 ~~g~g~~DlvlfvG~~~y~~~~~ls~lk~f~-~~~~i~l~ 133 (162)
T TIGR00315 95 FDGEGNYDLVLFLGIIYYYLSQMLSSLKHFS-HIVTIAID 133 (162)
T ss_pred ccCCCCcCEEEEeCCcchHHHHHHHHHHhhc-CcEEEEec
Confidence 9 89999999999983 11111233455 66777666
No 114
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.39 E-value=2.1e-12 Score=125.77 Aligned_cols=110 Identities=20% Similarity=0.270 Sum_probs=89.0
Q ss_pred CcccccchHHHHHHHHhCC----CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccc
Q 040733 483 FGSMGFGLPAAMGAAVANP----GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANR 556 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p----~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~ 556 (643)
.|++|.++|.|+|++++.+ +++|++++|||+|+ +...+|.+|.+++.|+++ |+|||+|++..
T Consensus 74 ~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~-vvdnN~~~~~~----------- 141 (195)
T cd02007 74 TGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIV-ILNDNEMSISP----------- 141 (195)
T ss_pred CCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEE-EEECCCcccCC-----------
Confidence 4889999999999999865 68999999999998 788999999999888877 55555555320
Q ss_pred cccccCCCCCCCCCCCCHHHHHhHCCCCEEE-e--CChhHHHHHHHHHHhCCCcEEEEEEeCCC
Q 040733 557 ANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-V--TKKKDVRAAIQLMLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 557 ~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~-V--~~~~eL~~al~~al~~~gp~lIeV~v~~~ 617 (643)
..-++..+++++|..... + .+.+++.++++++.+.++|++|++.+...
T Consensus 142 -------------~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~~~T~kg 192 (195)
T cd02007 142 -------------NVGTPGNLFEELGFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLHVVTKKG 192 (195)
T ss_pred -------------CCCCHHHHHHhcCCCccceECCCCHHHHHHHHHHHHhCCCCEEEEEEEecc
Confidence 001577888899987653 4 68899999999998888999999998653
No 115
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.32 E-value=7.3e-12 Score=142.01 Aligned_cols=123 Identities=19% Similarity=0.255 Sum_probs=98.3
Q ss_pred CCcccccchHHHHHHHHhC-----CCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 482 GFGSMGFGLPAAMGAAVAN-----PGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~-----p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
..|++|.++|.|+|+++|. ++++|+|++|||+++ |++++|.+|.+++.|+ ++|+||++|++-... ...
T Consensus 115 ~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nl-i~IvdnN~~~i~~~~-~~~--- 189 (580)
T PRK05444 115 GAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDL-IVILNDNEMSISPNV-GAL--- 189 (580)
T ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCE-EEEEECCCCcCCCcc-hhh---
Confidence 3488999999999999985 678999999999995 8899999999999888 688888888742110 000
Q ss_pred cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
... ....++.+++++||++++.+ ++.+++.++|+++.+.++|++|++.+......
T Consensus 190 ---~~~--------~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~T~kg~G~ 247 (580)
T PRK05444 190 ---SNY--------LARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHVVTKKGKGY 247 (580)
T ss_pred ---hhh--------hccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCcCC
Confidence 000 11246778999999999864 79999999999999888999999999887653
No 116
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=99.19 E-value=8.3e-11 Score=120.66 Aligned_cols=174 Identities=20% Similarity=0.262 Sum_probs=126.5
Q ss_pred CCCCCHHHHHHHHHhcC--------CCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCC
Q 040733 431 GEEIPPQYAIQILNELT--------DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPG 502 (643)
Q Consensus 431 ~~~i~~~~~~~~L~~~l--------~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~ 502 (643)
+..+...-+++.|.+.+ +.++..|++++|....|.. |+. .+.....-|-+.+.|.|.++|++.
T Consensus 18 CpGCG~~~~l~~i~~a~~~~~~l~~~~~c~~vvsgig~s~~~~~-y~~--------~~~~hs~~gra~a~atGik~A~~~ 88 (294)
T COG1013 18 CPGCGEFIILKLLTQALGDRAELGNATGCSVVVSGIGCSTRWPV-YVN--------PPWVHSLHGRAAAVATGIKLANPA 88 (294)
T ss_pred CCCCCchHHHHHHHHhccchhhhccCCCCeEEEeCCccCccccc-ccc--------CCceeeccCcchhhHHHHHHhccC
Confidence 45566666666665552 2226778888887765543 222 122235667899999999999999
Q ss_pred CeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCC-CCCCHHHHHhH
Q 040733 503 AIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSE-IFPDMLKFAEA 580 (643)
Q Consensus 503 ~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~-~~~d~~~lA~a 580 (643)
..||++.||| ++-..++.|..+.+.|.+|++||+||+.||+..-+.......... +.+ .|..... ...|...+|-+
T Consensus 89 l~Viv~gGDG~~~dIG~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G~~-t~t-~p~Gk~~~~k~d~~~la~a 166 (294)
T COG1013 89 LSVIVIGGDGDAYDIGGNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKGAK-TKT-TPYGKRSEKKKDPGLLAMA 166 (294)
T ss_pred CeEEEEecchhHhhhhhHHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCCce-eee-cCCCCCcCCCCCHHHHHHH
Confidence 9999999999 777899999999999999999999999999876433221111000 000 1221112 33499999999
Q ss_pred CCCCEE---EeCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 581 CGIPAA---RVTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 581 ~G~~~~---~V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
+|..++ .+.++.++...+++|++..||.+|+|..+
T Consensus 167 ~G~~yVAr~~~~~~~~l~~~i~kA~~~~Gps~I~v~sP 204 (294)
T COG1013 167 AGATYVARASVGDPKDLTEKIKKAAEHKGPSFIDVLSP 204 (294)
T ss_pred CCCCeEEEecccCHHHHHHHHHHHHhccCCeEEEEecC
Confidence 999876 56788999999999999999999999864
No 117
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.01 E-value=1.2e-07 Score=100.78 Aligned_cols=155 Identities=22% Similarity=0.189 Sum_probs=125.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC----CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS----NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~----~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
-++|.++++....+.|++.+.+||++++.++++.|.+. +..++..-+|.+|..||.|.+.+..| ++.+|||||+
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~Gl 83 (352)
T PRK07119 6 LMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAATGKR--VMTSSSSPGI 83 (352)
T ss_pred eehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHhhCCC--EEeecCcchH
Confidence 57999999999999999999999999999999999763 36899999999999999999988777 5567899999
Q ss_pred HHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhh--------ccceeeeEeCCcCcHHHHHHHHHHHhhc
Q 040733 145 TNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR--------YMTKHNYLVLDVDDIPRIIKEAFFIATS 216 (643)
Q Consensus 145 ~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~--------~~tk~~~~v~~~~~i~~~l~~A~~~A~s 216 (643)
+-..-++.-|.-.++|++++-.+++..-.| ..| .+|-+++- ..-.-.+...+++++-....+||++|..
T Consensus 84 ~lm~E~l~~a~~~e~P~v~v~v~R~~p~~g--~t~-~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~ 160 (352)
T PRK07119 84 SLKQEGISYLAGAELPCVIVNIMRGGPGLG--NIQ-PSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADK 160 (352)
T ss_pred HHHHHHHHHHHHccCCEEEEEeccCCCCCC--CCc-chhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888877633222 233 34555432 2223445567888999999999999987
Q ss_pred CCCCeEEEEcccc
Q 040733 217 GRPGPVLIDIPVD 229 (643)
Q Consensus 217 ~~~GPV~i~iP~D 229 (643)
.+ -||.+..-..
T Consensus 161 ~~-~PViv~~D~~ 172 (352)
T PRK07119 161 YR-NPVMVLGDGV 172 (352)
T ss_pred hC-CCEEEEcchh
Confidence 55 5998877543
No 118
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.98 E-value=3.2e-09 Score=121.25 Aligned_cols=138 Identities=17% Similarity=0.145 Sum_probs=93.8
Q ss_pred CCcccccchHHHHHHHHhCCCCeEEEEecCccc--cCCHHHHHHHHHhCCCeEEEEEeCCCchhh-------HHHHHHhh
Q 040733 482 GFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSF--IMNLQELAAIKAENIPVKILLINNQYLGMN-------VEYEDRYF 552 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf--~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~-------~~~q~~~~ 552 (643)
+.|+||+++|+|+|++++.++++|++++|||+| .+...++.+|.++++|+++ |+||++|.+- +.+.+-..
T Consensus 121 ~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~-I~dnN~~~i~~~~~~~~~~l~~~~~ 199 (641)
T PRK12571 121 SSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIV-ILNDNEMSIAPPVGALAAYLSTLRS 199 (641)
T ss_pred CcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEE-EEECCCeeecCCccHHHHHHHHHhc
Confidence 357899999999999999989999999999999 5678999999999998755 6677766542 11111100
Q ss_pred ccccc------cccc-CCCCCCC----------CCCCCHHHHHhHCCCCEE-Ee--CChhHHHHHHHHHHh-CCCcEEEE
Q 040733 553 EANRA------NSFL-GDPLRKS----------EIFPDMLKFAEACGIPAA-RV--TKKKDVRAAIQLMLE-TPGPYLLD 611 (643)
Q Consensus 553 ~~~~~------~~~~-g~p~~~~----------~~~~d~~~lA~a~G~~~~-~V--~~~~eL~~al~~al~-~~gp~lIe 611 (643)
...+. ...+ ..|.... ....-....-++||++++ .| ++.++|.++|+++.+ .++|.+|.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~~~~P~~I~ 279 (641)
T PRK12571 200 SDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARARADGPVLVH 279 (641)
T ss_pred CcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhCCCCCEEEE
Confidence 00000 0000 0000000 000011467899999999 56 488999999998876 68999999
Q ss_pred EEeCCCCCc
Q 040733 612 VMVSYQEHV 620 (643)
Q Consensus 612 V~v~~~~~~ 620 (643)
+.+-.....
T Consensus 280 ~~T~kGkG~ 288 (641)
T PRK12571 280 VVTEKGRGY 288 (641)
T ss_pred EEecCccCc
Confidence 999876543
No 119
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.94 E-value=1.3e-07 Score=106.62 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=125.2
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC----CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS----NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~----~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
.++|.++++....+.|++.+++||+++..++.+.|.+. ++.+++.-+|.+|..||.|.+.+..| ++.+|||||+
T Consensus 195 ~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~aG~R--a~taTSg~Gl 272 (562)
T TIGR03710 195 LISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASYAGAR--AMTATSGPGF 272 (562)
T ss_pred EeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHhcCCc--eeecCCCCCh
Confidence 47999999999999999999999999999999999764 49999999999999999999987776 5668999999
Q ss_pred HHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhcc-c------eeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 145 TNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM-T------KHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 145 ~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~-t------k~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
.=+.-++.-|...++|+|++.+|++-...|-. -..+|.+++... + .-.....++++.-....+||++|..-
T Consensus 273 ~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~--t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~ 350 (562)
T TIGR03710 273 ALMTEALGLAGMTETPLVIVDVQRGGPSTGLP--TKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKY 350 (562)
T ss_pred hHhHHHHhHHHhccCCEEEEEcccCCCCCCCC--CCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999984433211 112333333221 1 23444567788888999999999864
Q ss_pred CCCeEEEEcccch
Q 040733 218 RPGPVLIDIPVDV 230 (643)
Q Consensus 218 ~~GPV~i~iP~Dv 230 (643)
.=||.+..-.-+
T Consensus 351 -~~PViv~~D~~l 362 (562)
T TIGR03710 351 -QTPVIVLSDQYL 362 (562)
T ss_pred -cCCEEEEechHH
Confidence 378887764443
No 120
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.92 E-value=2.8e-08 Score=106.34 Aligned_cols=156 Identities=19% Similarity=0.136 Sum_probs=124.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC----CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS----NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~----~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
-++|.++++....+.||+.+++||++...++.+.|.+. +..++..-+|.+|..||.|.+.+..| ++.+|||||+
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~TaTSg~Gl 83 (376)
T PRK08659 6 FLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASWAGAK--AMTATSGPGF 83 (376)
T ss_pred EeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHhhCCC--eEeecCCCcH
Confidence 47999999999999999999999999999999999763 36899999999999999999987776 6678999999
Q ss_pred HHHHHHHHHhhhCCCCEEEEeCCCcccccCC---CCCCccCHHHHhh---ccceeeeEeCCcCcHHHHHHHHHHHhhcCC
Q 040733 145 TNIMTGLMDAYSDSIPILAITGQVSQKLLGT---DAFQEIPVVEVTR---YMTKHNYLVLDVDDIPRIIKEAFFIATSGR 218 (643)
Q Consensus 145 ~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~---~~~Q~~d~~~~~~---~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~ 218 (643)
+-.+-++.-|...++|+|++..+++....|- ..+++.+.. .+. .+-...+...+++++-....+||++|...+
T Consensus 84 ~lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~~-~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~ 162 (376)
T PRK08659 84 SLMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPAQGDMMQA-RWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYR 162 (376)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcCcHHHHHH-hcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHC
Confidence 9999999888899999999999987543231 122222111 111 223345566788889999999999998765
Q ss_pred CCeEEEEccc
Q 040733 219 PGPVLIDIPV 228 (643)
Q Consensus 219 ~GPV~i~iP~ 228 (643)
-||.+..-.
T Consensus 163 -~PViv~~D~ 171 (376)
T PRK08659 163 -TPVIVLADE 171 (376)
T ss_pred -CCEEEEech
Confidence 599987755
No 121
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.87 E-value=4.6e-08 Score=104.39 Aligned_cols=156 Identities=19% Similarity=0.166 Sum_probs=124.9
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC----CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS----NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~----~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
-++|.++++....+.|++.+.+||++...++.+.|.+. +..++.+-+|.+|..||.|-+.+..| ++.+|||||+
T Consensus 5 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~G~ 82 (375)
T PRK09627 5 ISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASMSGVK--SMTASSGPGI 82 (375)
T ss_pred EechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHhhCCC--EEeecCCchH
Confidence 47999999999999999999999999999999988763 47899999999999999999988777 6678999999
Q ss_pred HHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhh-------ccceeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 145 TNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR-------YMTKHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 145 ~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~-------~~tk~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
+-..-.+.-|....+|++++..+++....|.- -.++|-++.. .+.+..+...+++++-....+||++|..-
T Consensus 83 ~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p--~~~~q~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~ 160 (375)
T PRK09627 83 SLKAEQIGLGFIAEIPLVIVNVMRGGPSTGLP--TRVAQGDVNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERF 160 (375)
T ss_pred HHHhhHHHHHHhccCCEEEEEeccCCCcCCCC--CccchHHHHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998763322211 1112222221 23344556678888889999999999865
Q ss_pred CCCeEEEEcccc
Q 040733 218 RPGPVLIDIPVD 229 (643)
Q Consensus 218 ~~GPV~i~iP~D 229 (643)
+ =||.+..-..
T Consensus 161 ~-~PViv~~D~~ 171 (375)
T PRK09627 161 M-TPVFLLLDET 171 (375)
T ss_pred c-CceEEecchH
Confidence 4 7998877553
No 122
>PLN02790 transketolase
Probab=98.85 E-value=1.2e-08 Score=116.83 Aligned_cols=118 Identities=25% Similarity=0.262 Sum_probs=95.3
Q ss_pred CcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
.|.+|.+++.|+|.|+|.. +..|+|++|||+++-. ...+..|..+++|-+|+|+|||+|.+-..
T Consensus 104 tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~ 183 (654)
T PLN02790 104 TGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGD 183 (654)
T ss_pred CCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCC
Confidence 4888999999999988754 4679999999999875 45588899999998888999998876321
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe----CChhHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV----TKKKDVRAAIQLMLE-TPGPYLLDVMVSYQEH 619 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V----~~~~eL~~al~~al~-~~gp~lIeV~v~~~~~ 619 (643)
.. . ....|+.+.+++||++++.| ++.+++.++++++.+ .++|+||++.+.....
T Consensus 184 ~~----------~---------~~~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~P~lI~~~T~kG~G 242 (654)
T PLN02790 184 TE----------I---------AFTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIGYG 242 (654)
T ss_pred cc----------c---------ccchhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeEEEEEEEeecCC
Confidence 10 0 11347789999999999999 578899999999887 7899999999976654
No 123
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=98.81 E-value=1.8e-08 Score=104.81 Aligned_cols=116 Identities=28% Similarity=0.397 Sum_probs=81.4
Q ss_pred cccccchHHHHHHHHhC----CCCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccccc
Q 040733 484 GSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRA 557 (643)
Q Consensus 484 g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~ 557 (643)
+.+|..+|.|.|.++|. .+.-++++.|||+..-. +.| |..|..+++|+++||-||+ |++....+..
T Consensus 101 ~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~-~aist~~~~~------- 172 (300)
T PF00676_consen 101 SPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQ-YAISTPTEEQ------- 172 (300)
T ss_dssp SSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEES-EETTEEHHHH-------
T ss_pred ccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCC-cccccCcccc-------
Confidence 56677788888887763 45679999999996654 555 7778899999977777776 6664222111
Q ss_pred ccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHH----hCCCcEEEEEEeCCCC
Q 040733 558 NSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLML----ETPGPYLLDVMVSYQE 618 (643)
Q Consensus 558 ~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al----~~~gp~lIeV~v~~~~ 618 (643)
....++...|++||+++++|+ ++.++.+++++|+ +.+||+|||+.+.+-.
T Consensus 173 -----------~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~ 228 (300)
T PF00676_consen 173 -----------TASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLR 228 (300)
T ss_dssp -----------CSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS
T ss_pred -----------ccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCC
Confidence 123567889999999999994 6666666666655 4689999999997653
No 124
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=98.80 E-value=6.5e-08 Score=100.83 Aligned_cols=184 Identities=16% Similarity=0.110 Sum_probs=126.2
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhcccc-------CCCeEEecC--CCcccccchHHHHHHHH-
Q 040733 429 TFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYK-------RARQLLTSS--GFGSMGFGLPAAMGAAV- 498 (643)
Q Consensus 429 ~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~-------~p~~~~~~~--~~g~mG~glpaAiGaal- 498 (643)
..+..|...-.++.|.+++.+ +.+|+...|+...|+..+-..+ ++-.|..+. .-+..|+|+-.|+=...
T Consensus 7 gACaGCget~y~klltqlfG~-r~iIaNatGCssI~gg~~P~tp~~~~~~g~Gpaw~nslFEdnAe~g~G~~~a~~~~r~ 85 (365)
T cd03377 7 GACAGCGETPYVKLLTQLFGD-RMVIANATGCSSIYGGSAPTTPYTTNAKGRGPAWANSLFEDNAEFGLGMRLAVDQRRE 85 (365)
T ss_pred ccCCCCchHHHHHHHHHHhCC-CeEEEecCCCceeecCCCCCCcceeccCCCCCccccccccchhHHHhHHHHHHHHHHH
Confidence 346778888889999999988 8999999998888875541100 011222221 12455666655553331
Q ss_pred -----------------------------------------------h-----------C----CCCeEEEEecCc-ccc
Q 040733 499 -----------------------------------------------A-----------N----PGAIVVDIDGDG-SFI 515 (643)
Q Consensus 499 -----------------------------------------------A-----------~----p~~~Vv~i~GDG-sf~ 515 (643)
. . +...||++.||| ++-
T Consensus 86 ~~~~~v~~~~~~~~~~~l~~~~~~wl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~d~l~~~~v~v~gGDG~~yd 165 (365)
T cd03377 86 RARELVQKLIEKIGDEELKTLLNAWLATEDDIEESRERVAKLKPLLAAEKDELAKELLSLADYLVKKSVWIIGGDGWAYD 165 (365)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHccccHHHHHHHHHHHHHHHhccCcHHHHHHHhhhhhccccceEEEecchhhhc
Confidence 1 1 125899999999 567
Q ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE---EeC-Ch
Q 040733 516 MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA---RVT-KK 591 (643)
Q Consensus 516 m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~---~V~-~~ 591 (643)
..++.|..+.+.|.+|++||+||..|++...+......... .+. ..|.......-|...+|.++|..|+ .+. ++
T Consensus 166 IG~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga-~t~-tsp~Gk~~~kkd~~~ia~a~g~~YVA~~s~~~~~ 243 (365)
T cd03377 166 IGYGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGA-VAK-FAAAGKRTGKKDLGMIAMSYGNVYVAQIALGAND 243 (365)
T ss_pred cchhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcC-cCc-cCCCCCCCCCcCHHHHHHHcCCCEEEEEecccCH
Confidence 88999999999999999999999999987422111100000 000 0222223345699999999999876 343 88
Q ss_pred hHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 592 KDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 592 ~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
.++..++++|++.+||.+|+|..+
T Consensus 244 ~~~~~~i~eA~~~~Gps~I~v~sP 267 (365)
T cd03377 244 NQTLKAFREAEAYDGPSLIIAYSP 267 (365)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcc
Confidence 999999999999999999999975
No 125
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.78 E-value=6.5e-08 Score=109.55 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=90.9
Q ss_pred CCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccc
Q 040733 482 GFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEAN 555 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 555 (643)
+.|..|.+++.|+|.++|. .++.||+++|||++... ...|..|..+++|+++||-|| +|.+-.....
T Consensus 111 ~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN-~~si~~~~~~------ 183 (581)
T PRK12315 111 TVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDN-QMSIAENHGG------ 183 (581)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECC-CCcCCCCCch------
Confidence 3355666899999988873 35789999999999973 555889999998876655555 4655311000
Q ss_pred ccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcc
Q 040733 556 RANSFLGDPLRKSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVV 621 (643)
Q Consensus 556 ~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~ 621 (643)
....+.. .......|...++++||++++.+ .+.+++.++++++.+.+||+||+|.+.+.....
T Consensus 184 -~~~~l~~--~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 184 -LYKNLKE--LRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred -hhhhhhh--hhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEEEeecCCCCC
Confidence 0000000 00012346778999999999988 378899999999888889999999999876543
No 126
>PTZ00089 transketolase; Provisional
Probab=98.72 E-value=5.3e-08 Score=111.77 Aligned_cols=117 Identities=23% Similarity=0.267 Sum_probs=93.7
Q ss_pred CcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
.|.+|.+++.|+|.|+|.. +.+|+|++|||+++=. ...|..|..++|+.+|+|+|||++.+-..
T Consensus 115 tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~ 194 (661)
T PTZ00089 115 TGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGN 194 (661)
T ss_pred CcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccC
Confidence 4889999999999988742 5679999999999864 45588899999998888999998876321
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe---C-ChhHHHHHHHHHHhC-CCcEEEEEEeCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV---T-KKKDVRAAIQLMLET-PGPYLLDVMVSYQE 618 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V---~-~~~eL~~al~~al~~-~gp~lIeV~v~~~~ 618 (643)
.. . ....++.+..++||++++.| + +.++|.++++++.+. ++|++|++.+-+..
T Consensus 195 ~~----------~---------~~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~P~~I~~~T~kG~ 252 (661)
T PTZ00089 195 TD----------L---------SFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPKLIIVKTTIGY 252 (661)
T ss_pred cc----------c---------ccCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEEeeecC
Confidence 10 0 12357889999999999999 2 789999999998874 79999999997643
No 127
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=98.70 E-value=1.2e-07 Score=98.87 Aligned_cols=119 Identities=26% Similarity=0.340 Sum_probs=84.0
Q ss_pred CCCcccccchHHHHHHHHhC-----CCCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 481 SGFGSMGFGLPAAMGAAVAN-----PGAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~-----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
++.+.+|..+|-|.|+++|. .++-++++.|||+..-. +-| |.-|.-+++|++++|-|| +|+|- .+...
T Consensus 133 ~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN-~yAiS--vp~~~-- 207 (358)
T COG1071 133 GGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENN-QYAIS--VPRSR-- 207 (358)
T ss_pred CCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecC-Cceee--cchhh--
Confidence 34578888999999998873 33479999999999875 555 777889999977666555 57774 11110
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCCh--hHH----HHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKK--KDV----RAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~--~eL----~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
+ .....++.=|.+||+++++|+-. -.+ ++|.+++.+.+||+|||+.+.|..
T Consensus 208 -----q---------~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~ 264 (358)
T COG1071 208 -----Q---------TAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYG 264 (358)
T ss_pred -----c---------ccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecC
Confidence 0 12234666788999999999643 333 445555556789999999998764
No 128
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.69 E-value=4.2e-07 Score=97.50 Aligned_cols=152 Identities=15% Similarity=0.072 Sum_probs=120.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC------CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS------NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGP 142 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~------~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~Gp 142 (643)
-++|.++++......|++.+++||++...++.+.|.+. ++.++..-+|.+|..||.|.+.+..| ++.+||||
T Consensus 5 ~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaR--a~TaTSg~ 82 (390)
T PRK08366 5 VVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGAR--AFTATSAQ 82 (390)
T ss_pred EeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeeCcc
Confidence 47999999999999999999999999999999988652 37788888999999999999988887 56679999
Q ss_pred hhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhh-ccceeee-EeCCcCcHHHHHHHHHHHhhcCCCC
Q 040733 143 GVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR-YMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPG 220 (643)
Q Consensus 143 G~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~-~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~G 220 (643)
|+.=+.-+|.-|...++|+|+.-.+++-.- + ... ..||.+++. -.+.|.. ...++++.-....+||++|..-+ -
T Consensus 83 Gl~lm~E~l~~aa~~~lPiVi~~~~R~~p~-~-~~~-~~~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~-~ 158 (390)
T PRK08366 83 GLALMHEMLHWAAGARLPIVMVDVNRAMAP-P-WSV-WDDQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFKVAETVN-L 158 (390)
T ss_pred cHHHHhhHHHHHHhcCCCEEEEEeccCCCC-C-CCC-cchhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHC-C
Confidence 999999999999999999998888776441 1 111 123444332 2233322 24678888999999999998644 7
Q ss_pred eEEEEc
Q 040733 221 PVLIDI 226 (643)
Q Consensus 221 PV~i~i 226 (643)
||.+..
T Consensus 159 PViv~~ 164 (390)
T PRK08366 159 PAMVVE 164 (390)
T ss_pred CEEEEe
Confidence 888776
No 129
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=98.68 E-value=9.8e-08 Score=109.49 Aligned_cols=118 Identities=21% Similarity=0.248 Sum_probs=93.6
Q ss_pred CcccccchHHHHHHHHhC--------------CCCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVAN--------------PGAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~--------------p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
.|++|.|++.|+|.|+|. .+.+|+|++|||+++-. ..| +..|..++||.+|+|+|||+|.+-..
T Consensus 109 tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~ 188 (653)
T TIGR00232 109 TGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGA 188 (653)
T ss_pred CcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeeccc
Confidence 388999999999998873 25679999999999985 444 88899999999999999998876321
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe-C--ChhHHHHHHHHHHhC-CCcEEEEEEeCCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV-T--KKKDVRAAIQLMLET-PGPYLLDVMVSYQEH 619 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V-~--~~~eL~~al~~al~~-~gp~lIeV~v~~~~~ 619 (643)
.. . ....++.+..++||+++.+| + +.+++.++++++.+. ++|++|++.+.+...
T Consensus 189 ~~----------~---------~~~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~~~~P~~I~~~T~~g~G 246 (653)
T TIGR00232 189 VD----------G---------SFTEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEVTTTIGFG 246 (653)
T ss_pred cc----------c---------ccCccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeeeccc
Confidence 10 0 11358999999999999999 3 678889999988776 489999999976543
No 130
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.67 E-value=4.4e-07 Score=98.33 Aligned_cols=156 Identities=18% Similarity=0.117 Sum_probs=122.0
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC---C---CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS---N---IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGP 142 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~---~---i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~Gp 142 (643)
-++|.+++++...+.|++.+++||+++..++.+.|.+. | ..+|..-+|.+|..||.|.+.+..| ++..||||
T Consensus 12 ~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs~aGaR--a~TaTS~~ 89 (407)
T PRK09622 12 VWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAAAAGGR--VATATSSQ 89 (407)
T ss_pred ecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHHhhCcC--EEeecCcc
Confidence 47999999999999999999999999999999998653 2 5788999999999999999977766 66789999
Q ss_pred hhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhc-cce-eeeEeCCcCcHHHHHHHHHHHhhcC-CC
Q 040733 143 GVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY-MTK-HNYLVLDVDDIPRIIKEAFFIATSG-RP 219 (643)
Q Consensus 143 G~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~-~tk-~~~~v~~~~~i~~~l~~A~~~A~s~-~~ 219 (643)
|+.=+.-+|.-|...++|++++..++.-.. . -..+ .||.+++.. .+. ..+...++++.-+...+||++|... -.
T Consensus 90 Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~~-~-~~i~-~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~ 166 (407)
T PRK09622 90 GLALMVEVLYQASGMRLPIVLNLVNRALAA-P-LNVN-GDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVR 166 (407)
T ss_pred hHHHHhhHHHHHHHhhCCEEEEEeccccCC-C-cCCC-chHHHHHHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999888888776321 1 1111 244444332 222 2334567888889999999999764 14
Q ss_pred CeEEEEcccc
Q 040733 220 GPVLIDIPVD 229 (643)
Q Consensus 220 GPV~i~iP~D 229 (643)
-||.+..-.-
T Consensus 167 ~Pviv~~Dg~ 176 (407)
T PRK09622 167 LPVIVNQDGF 176 (407)
T ss_pred CCEEEEechh
Confidence 7998877544
No 131
>PRK12754 transketolase; Reviewed
Probab=98.67 E-value=1.2e-07 Score=108.04 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=93.8
Q ss_pred CcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
.|++|.|++.|+|.|+|.. +.+|+|++|||.++=. ..| +..|..++||.+|+|++||++.+-..
T Consensus 113 tG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~ 192 (663)
T PRK12754 113 TGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGH 192 (663)
T ss_pred CCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcc
Confidence 3889999999999988731 5779999999999975 444 88899999998888888888775321
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE-eC--ChhHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-VT--KKKDVRAAIQLMLE-TPGPYLLDVMVSYQEH 619 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~-V~--~~~eL~~al~~al~-~~gp~lIeV~v~~~~~ 619 (643)
.. . ....|+.+-.++||+++++ |+ +.+++.+|++++.. .++|++|++.+-....
T Consensus 193 ~~----------~---------~~~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt~I~~~T~~g~G 250 (663)
T PRK12754 193 VE----------G---------WFTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMCKTIIGFG 250 (663)
T ss_pred hh----------h---------ccCccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccC
Confidence 10 0 1235899999999999998 64 78899999998875 5899999999987654
No 132
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.67 E-value=1.3e-07 Score=94.31 Aligned_cols=149 Identities=19% Similarity=0.161 Sum_probs=103.4
Q ss_pred HHHHCCCCEEEEccCCCcHHHHHHHhh---CC-C--eEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH
Q 040733 79 ALERQGVTTVFAYPGGASIEIHQSLTR---SN-I--RSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLM 152 (643)
Q Consensus 79 ~L~~~GV~~vFg~PG~~~~~l~~al~~---~~-i--~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~ 152 (643)
...+.|++.+++||++...++++.+.+ .+ + +++..-+|.+|..||.|.+.+..| ++..|+|||+.-..-+|.
T Consensus 2 ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~aG~r--a~t~ts~~Gl~lm~e~l~ 79 (230)
T PF01855_consen 2 GAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASAAGAR--AMTATSGPGLNLMAEPLY 79 (230)
T ss_dssp HHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHHTT----EEEEEECCHHHHHCCCHH
T ss_pred HHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHhcCCc--eEEeecCCcccccHhHHH
Confidence 567889999999999999999998764 23 4 999999999999999999976665 345799999999999999
Q ss_pred HhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccch
Q 040733 153 DAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDV 230 (643)
Q Consensus 153 ~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv 230 (643)
-|...++|++++..+++....|....++-+..-..+..-.-.....++++.-.....||++|..-+ -||.+..-.-+
T Consensus 80 ~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~-~PViv~~Dg~~ 156 (230)
T PF01855_consen 80 WAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQ-TPVIVLFDGFL 156 (230)
T ss_dssp HHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHT-SEEEEEEECCC
T ss_pred HHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHC-CCEEEEechhh
Confidence 999999999999988775444322222222222333333345556788899999999999998744 79988775443
No 133
>PRK12753 transketolase; Reviewed
Probab=98.65 E-value=1.4e-07 Score=108.22 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=94.2
Q ss_pred CCcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 482 GFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
..|.+|.|++.|+|.|+|.. +.+|+|++|||+++=. ...+..|..++||-+|+|+|||++.+-.
T Consensus 112 ~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~ 191 (663)
T PRK12753 112 TTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDG 191 (663)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCC
Confidence 34889999999999988731 4689999999999875 4458889999999888888988877642
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE-eC--ChhHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-VT--KKKDVRAAIQLMLE-TPGPYLLDVMVSYQEH 619 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~-V~--~~~eL~~al~~al~-~~gp~lIeV~v~~~~~ 619 (643)
... . ....|+.+..++||++++. |+ +.+++.++++++.+ .++|++|++.+-....
T Consensus 192 ~~~----------~---------~~~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P~~I~~~T~kG~G 250 (663)
T PRK12753 192 ETE----------G---------WFTDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIICRTIIGFG 250 (663)
T ss_pred Chh----------h---------hcChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHCCCCeEEEEEEEeecCC
Confidence 111 0 1134789999999999985 74 78899999998876 4899999999987654
No 134
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.64 E-value=6.8e-07 Score=96.12 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=118.8
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC------CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS------NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGP 142 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~------~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~Gp 142 (643)
-++|.+++++...+.|++.+++||++...++.+.|.+. +.+++..-+|.+|..||.|.+.+..| ++.+||||
T Consensus 6 ~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~aGaR--a~TaTS~~ 83 (394)
T PRK08367 6 VMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASAAGVR--TFTATASQ 83 (394)
T ss_pred eccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeeccc
Confidence 37999999999999999999999999999999998762 27788888999999999999988777 66789999
Q ss_pred hhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHh--hccceeeeEeCCcCcHHHHHHHHHHHhhcCC-C
Q 040733 143 GVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVT--RYMTKHNYLVLDVDDIPRIIKEAFFIATSGR-P 219 (643)
Q Consensus 143 G~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~--~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~-~ 219 (643)
|++=..-.|.-|...++|+++..+++.... ...-+ .||.+++ +..-.......++++.-.....||++|...+ .
T Consensus 84 Gl~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~~i~--~d~~D~~~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~ 160 (394)
T PRK08367 84 GLALMHEVLFIAAGMRLPIVMAIGNRALSA-PINIW--NDWQDTISQRDTGWMQFYAENNQEALDLILIAFKVAEDERVL 160 (394)
T ss_pred hHHHHhhHHHHHHHccCCEEEEECCCCCCC-CCCcC--cchHHHHhccccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999887665432 11111 1222222 2211112223677888889999999998533 2
Q ss_pred CeEEEEccc
Q 040733 220 GPVLIDIPV 228 (643)
Q Consensus 220 GPV~i~iP~ 228 (643)
=||.+..-.
T Consensus 161 ~Pviv~~Dg 169 (394)
T PRK08367 161 LPAMVGFDA 169 (394)
T ss_pred CCEEEEech
Confidence 588877643
No 135
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=98.63 E-value=1.8e-07 Score=94.20 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=82.9
Q ss_pred CCcccccchHHHHHHHHhC---------CCCeEEEEecCcccc-C-CHHH-HHHHHHhCCC---eEEEEEeCCCchhhHH
Q 040733 482 GFGSMGFGLPAAMGAAVAN---------PGAIVVDIDGDGSFI-M-NLQE-LAAIKAENIP---VKILLINNQYLGMNVE 546 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~---------p~~~Vv~i~GDGsf~-m-~~~e-L~Ta~~~~lp---v~ivV~NN~~~g~~~~ 546 (643)
+-+.+|..+|-|.|+++|. .+.-+|++.|||+|. . .+.| |.-+.-.++| +++||.|| +|++...
T Consensus 111 npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNN-q~g~sT~ 189 (265)
T cd02016 111 NPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNN-QIGFTTD 189 (265)
T ss_pred CCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeC-CEEEEec
Confidence 3466888888888888774 145678999999973 4 3666 4445666787 66666665 4776432
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe--CChhHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV--TKKKDVRAAIQLMLE----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V--~~~~eL~~al~~al~----~~gp~lIeV~v~~~ 617 (643)
..+. ....+..+.|++||+++++| .+++++.++.++|++ .+||+|||+.+.|.
T Consensus 190 ~~~~------------------~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~ 248 (265)
T cd02016 190 PRDS------------------RSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRR 248 (265)
T ss_pred HHHh------------------cccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Confidence 1111 12357889999999999999 466777777776654 57899999999775
No 136
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=98.63 E-value=1.9e-07 Score=99.10 Aligned_cols=115 Identities=25% Similarity=0.339 Sum_probs=81.0
Q ss_pred CCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccc
Q 040733 482 GFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEAN 555 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 555 (643)
..+.+|.++|.|+|+++|. .++.++++.|||+..-. +.| |..|..+++|+++||-||+ |++-...+.
T Consensus 136 ~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~-~aist~~~~------ 208 (362)
T PLN02269 136 GHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNH-YGMGTAEWR------ 208 (362)
T ss_pred cCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCC-EeccCchhh------
Confidence 3477888999999988874 45789999999997764 444 6778889999777766666 886421111
Q ss_pred ccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh---CCCcEEEEEEeCCC
Q 040733 556 RANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE---TPGPYLLDVMVSYQ 617 (643)
Q Consensus 556 ~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~---~~gp~lIeV~v~~~ 617 (643)
.....+|.+ +++++++++|+ ++.++.++++++.+ .+||+|||+.+.+-
T Consensus 209 ------------~~~~~~~~~--~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~tyR~ 261 (362)
T PLN02269 209 ------------AAKSPAYYK--RGDYVPGLKVDGMDVLAVKQACKFAKEHALSNGPIVLEMDTYRY 261 (362)
T ss_pred ------------hccchHHHH--hhcCCCeEEECCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCcC
Confidence 012234553 45788888884 66677777776553 28999999998765
No 137
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=98.56 E-value=1e-07 Score=99.98 Aligned_cols=118 Identities=20% Similarity=0.208 Sum_probs=87.7
Q ss_pred CcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
-|++|.|++.|+|.|+|.. +.+|+|++|||.++=. ...+..|.+++|+=+|+|+|+|+..+-.
T Consensus 110 tGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg- 188 (332)
T PF00456_consen 110 TGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDG- 188 (332)
T ss_dssp -SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTE-
T ss_pred ccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcccCC-
Confidence 4899999999999998741 4579999999999874 4558999999999777777777654321
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHhC-CCcEEEEEEeCCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLET-PGPYLLDVMVSYQEH 619 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~~-~gp~lIeV~v~~~~~ 619 (643)
.. .. ....|+.+--++||.+.++| ++.++|.+||+++... ++|++|.+.+-....
T Consensus 189 --------~~-~~---------~~~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~TvkG~G 247 (332)
T PF00456_consen 189 --------PT-DI---------VFSEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIARTVKGKG 247 (332)
T ss_dssp --------EG-GG---------THHSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEEE-TTTT
T ss_pred --------Cc-cc---------ccchHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecceEEecC
Confidence 00 00 11247888999999999998 7899999999999875 899999999976653
No 138
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=98.50 E-value=7.8e-07 Score=78.53 Aligned_cols=160 Identities=17% Similarity=0.250 Sum_probs=122.0
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
.++++++++.+.|++.|++.++.+|=+..-.++.-+++++ |..|....|..+...+.|.+.+.+||+.++-.|| ..|
T Consensus 2 ~kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsG--lGN 79 (172)
T COG4032 2 YKVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSG--LGN 79 (172)
T ss_pred cccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcCCCcEEEEeccC--cch
Confidence 4678999999999999999999999999999998888887 8888888888888888899999999999987755 567
Q ss_pred HHHHHHHhhhC-CCCEEEEeCCCcccccCCCCCCcc---CHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeE
Q 040733 147 IMTGLMDAYSD-SIPILAITGQVSQKLLGTDAFQEI---PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPV 222 (643)
Q Consensus 147 ~~~gl~~A~~~-~vPvlvItg~~~~~~~g~~~~Q~~---d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV 222 (643)
.+++++.-+.- ++|++.|.+.+.....+-.+ |-. -..++++..--..|++.+|++...+|..|+..|..-. .||
T Consensus 80 siNal~SL~~ty~iPl~ml~ShRG~~~E~i~A-QVpmGr~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s-~pv 157 (172)
T COG4032 80 SINALASLYVTYKIPLLMLASHRGVLKEGIEA-QVPMGRALPKILEGLELPTYTIIGPEEALPLIENAILDAFENS-RPV 157 (172)
T ss_pred HHHHHHHHHHHhccchhhhhhccchhhcCCcc-ccccchhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcC-Cce
Confidence 77777776654 79999998866543322211 100 1123454444568889999999999999998887543 577
Q ss_pred EEEcccchh
Q 040733 223 LIDIPVDVQ 231 (643)
Q Consensus 223 ~i~iP~Dv~ 231 (643)
-+-+-..++
T Consensus 158 ~vlls~~~W 166 (172)
T COG4032 158 AVLLSPKYW 166 (172)
T ss_pred EEEechHHh
Confidence 766654444
No 139
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=98.46 E-value=1.6e-06 Score=99.03 Aligned_cols=136 Identities=16% Similarity=0.264 Sum_probs=90.6
Q ss_pred CCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHH--HH---
Q 040733 482 GFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYE--DR--- 550 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q--~~--- 550 (643)
..|..|.+++.|+|.++|. .+..|++++|||++.-. +..+..|..+++|+ ++|+|||+|.+-.... ..
T Consensus 109 ~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~-i~ii~~N~~~i~~~~~~~~~~l~ 187 (617)
T TIGR00204 109 SAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDM-IVILNDNEMSISENVGALSNHLA 187 (617)
T ss_pred CCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCE-EEEEECCCcccCCCchHHHHHHH
Confidence 3466777899999988874 56789999999999864 55688899999998 7778888876542110 00
Q ss_pred ------hhcccc--cccccCCCCCCCCCCCC-H-H-------------HHHhHCCCCEE-Ee--CChhHHHHHHHHHHhC
Q 040733 551 ------YFEANR--ANSFLGDPLRKSEIFPD-M-L-------------KFAEACGIPAA-RV--TKKKDVRAAIQLMLET 604 (643)
Q Consensus 551 ------~~~~~~--~~~~~g~p~~~~~~~~d-~-~-------------~lA~a~G~~~~-~V--~~~~eL~~al~~al~~ 604 (643)
.|.... ........ ....+ + . .+.++||..+. .| ++.++|.++++++.+.
T Consensus 188 ~~~~~~~y~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~~ 263 (617)
T TIGR00204 188 QLRSGSLYQSLRDGLKKIFSKL----PPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLKNAKKL 263 (617)
T ss_pred HhhccchHHHHHHHHHHHHhcC----cchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHHHHhcC
Confidence 000000 00000000 00001 1 1 24788999888 56 5888999999988878
Q ss_pred CCcEEEEEEeCCCCCccc
Q 040733 605 PGPYLLDVMVSYQEHVVP 622 (643)
Q Consensus 605 ~gp~lIeV~v~~~~~~~p 622 (643)
++|++|+|.|.+.....+
T Consensus 264 ~~P~~i~~~T~KGkG~~~ 281 (617)
T TIGR00204 264 KGPVFLHIQTKKGKGYKP 281 (617)
T ss_pred CCCEEEEEEecCCCCCch
Confidence 899999999988765444
No 140
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=98.35 E-value=1.5e-06 Score=91.56 Aligned_cols=119 Identities=19% Similarity=0.180 Sum_probs=89.4
Q ss_pred cccccchHHHHHHHHhC-----------CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHH
Q 040733 484 GSMGFGLPAAMGAAVAN-----------PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDR 550 (643)
Q Consensus 484 g~mG~glpaAiGaalA~-----------p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~ 550 (643)
|++|.|++.|+|.|++. .+.+|+||+|||.++=. ...+..|..++|+=+|+|+|+|+..+-.
T Consensus 118 GSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG----- 192 (386)
T cd02017 118 VSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDG----- 192 (386)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCC-----
Confidence 78999999999888763 25789999999999864 4558889999997777777777653311
Q ss_pred hhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC-----------------------------------------
Q 040733 551 YFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT----------------------------------------- 589 (643)
Q Consensus 551 ~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~----------------------------------------- 589 (643)
..... ....-|+.+-.++||.+.+.|+
T Consensus 193 ----~t~~v--------~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r 260 (386)
T cd02017 193 ----PVRGN--------GKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVR 260 (386)
T ss_pred ----ccccc--------ccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHH
Confidence 00000 0022489999999999999884
Q ss_pred ------------------------------ChhHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 040733 590 ------------------------------KKKDVRAAIQLMLE-TPGPYLLDVMVSYQEH 619 (643)
Q Consensus 590 ------------------------------~~~eL~~al~~al~-~~gp~lIeV~v~~~~~ 619 (643)
+.++|.+|++++.. .++|++|-+.|-....
T Consensus 261 ~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~~~kPt~Iia~TikG~G 321 (386)
T cd02017 261 EHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEHKGKPTVILAKTIKGYG 321 (386)
T ss_pred HHhccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhCCCCCeEEEEeCeecCC
Confidence 78889999988875 5789999999866543
No 141
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.29 E-value=6.7e-06 Score=93.06 Aligned_cols=141 Identities=18% Similarity=0.131 Sum_probs=88.7
Q ss_pred CCcccccchHHHHHHHHhC----CCCeEEEEecCccccC--CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccc
Q 040733 482 GFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIM--NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEAN 555 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 555 (643)
+-|+.|.||++|+|.|+|. .+.+|++++|||.+.= .+..+..|.+++-+ +++|+|+|+.-+....|.....++
T Consensus 175 ~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~n-livIlddN~~~~~~~~q~~g~~~~ 253 (641)
T PLN02234 175 GTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSN-MIVILNDNKQVSLPTANLDGPTQP 253 (641)
T ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCC-EEEEEECCCCCcccccccCCCCCC
Confidence 3488899999999998875 3568999999999975 46678888876755 555556665422110000000000
Q ss_pred cccc--ccCC-CCCCCCCCCCHHHHHhHCCCCEE-Ee--CChhHHHHHHHHHHhC--CCcEEEEEEeCCCCCcccc
Q 040733 556 RANS--FLGD-PLRKSEIFPDMLKFAEACGIPAA-RV--TKKKDVRAAIQLMLET--PGPYLLDVMVSYQEHVVPM 623 (643)
Q Consensus 556 ~~~~--~~g~-p~~~~~~~~d~~~lA~a~G~~~~-~V--~~~~eL~~al~~al~~--~gp~lIeV~v~~~~~~~p~ 623 (643)
...- .+.. -.+.....-+.....++||++++ .| ++.++|.++|+++.+. ++|.+|.+.+-....+-++
T Consensus 254 v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~ 329 (641)
T PLN02234 254 VGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYA 329 (641)
T ss_pred cccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchh
Confidence 0000 0000 00000000145788999999999 77 6889999999987654 5899999999887654433
No 142
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=98.28 E-value=2.1e-06 Score=85.26 Aligned_cols=174 Identities=20% Similarity=0.267 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcC--CCCCeEEEeCCChhHHHHHHhccccCC-----CeE-------------EecCCCcccccchHHHHH
Q 040733 436 PQYAIQILNELT--DDEETIISTGVGQHQMWAIQFYMYKRA-----RQL-------------LTSSGFGSMGFGLPAAMG 495 (643)
Q Consensus 436 ~~~~~~~L~~~l--~~~d~iv~~d~G~~~~~~~~~~~~~~p-----~~~-------------~~~~~~g~mG~glpaAiG 495 (643)
--.+--+|-.++ |. |-|| -|+|.. .+.-..+.-++. |++ +...+.|--|.++++|+|
T Consensus 46 vVELTiALH~vFd~p~-Dkiv-wDvGHQ-~Y~HKiLTGR~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~G 122 (270)
T PF13292_consen 46 VVELTIALHYVFDSPK-DKIV-WDVGHQ-AYVHKILTGRRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALG 122 (270)
T ss_dssp CHHHHHHHHHHS-TTT-SEEE-ESSSTT--HHHHHCTTTCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHH
T ss_pred HHHHHHHHHHHhCCCC-CeEE-Eecccc-cchhhhccCcHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHH
Confidence 345555555555 44 5555 588854 445454442211 110 111233556778999999
Q ss_pred HHHhC----CCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhH-------HH----HHHhhcccc--
Q 040733 496 AAVAN----PGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNV-------EY----EDRYFEANR-- 556 (643)
Q Consensus 496 aalA~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~-------~~----q~~~~~~~~-- 556 (643)
.+.|+ .++.||+|+|||++. |.+..|..+...+-+++||+-+|+ ..+-. .+ ....|..-.
T Consensus 123 ma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVILNDN~-mSIs~nvGals~~L~~l~~~~~y~~~k~~ 201 (270)
T PF13292_consen 123 MAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVILNDNE-MSISPNVGALSKYLSKLRSSPTYNKLKED 201 (270)
T ss_dssp HHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-S-BSSSB--SSHCCC----------------
T ss_pred HHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEEEeCCC-cccCCCcchHHHHHHhccchhHHHHHHHH
Confidence 99885 578999999999986 567789999999988666555554 43311 11 111111000
Q ss_pred cccccC--CCCC-------CCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHhCCCcEEEEEEe
Q 040733 557 ANSFLG--DPLR-------KSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLETPGPYLLDVMV 614 (643)
Q Consensus 557 ~~~~~g--~p~~-------~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~~~gp~lIeV~v 614 (643)
....+. .+.. ...... +..+.|.+|..|+-. .+.++|.++|+++.+.+||+||+|.+
T Consensus 202 ~~~~l~~~~~~~~~~~r~~~s~K~~-~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~~gPvllHV~T 270 (270)
T PF13292_consen 202 VKSLLKKIPPIEEFAKRIKESLKGF-SPNLFEELGFDYIGPIDGHDLEELIEVLENAKDIDGPVLLHVIT 270 (270)
T ss_dssp ----------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCSSSEEEEEEE-
T ss_pred HHHHHHhhhHHHHHHHHHhhhhhhh-hHHHHHHcCCeEEeccCCCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 000000 0000 000001 125678889998855 68889999999999999999999975
No 143
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.27 E-value=9.6e-06 Score=92.60 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=87.4
Q ss_pred CcccccchHHHHHHHHhC----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCc---------------
Q 040733 483 FGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYL--------------- 541 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~--------------- 541 (643)
-|..|.+++.|+|.++|. .++.||+++|||++.-. +..|..|..+++|+++||-||+.-
T Consensus 143 ~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg 222 (677)
T PLN02582 143 TGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVG 222 (677)
T ss_pred cchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCcc
Confidence 477888999999988874 46789999999999864 566888999999966666666531
Q ss_pred hhhHHHHH----Hhhc---ccccccccCCCCC------------CCCCCCCHHHHHhHCCCCEE-Ee--CChhHHHHHHH
Q 040733 542 GMNVEYED----RYFE---ANRANSFLGDPLR------------KSEIFPDMLKFAEACGIPAA-RV--TKKKDVRAAIQ 599 (643)
Q Consensus 542 g~~~~~q~----~~~~---~~~~~~~~g~p~~------------~~~~~~d~~~lA~a~G~~~~-~V--~~~~eL~~al~ 599 (643)
++-+++.. ..|. +......-..|.. .....+.=..+.++||.+|+ .| ++.++|.++|+
T Consensus 223 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~ 302 (677)
T PLN02582 223 ALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILR 302 (677)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHH
Confidence 11111110 0110 0000000000000 00000000036789999987 44 68899999999
Q ss_pred HHHhC--CCcEEEEEEeCCCCCcccc
Q 040733 600 LMLET--PGPYLLDVMVSYQEHVVPM 623 (643)
Q Consensus 600 ~al~~--~gp~lIeV~v~~~~~~~p~ 623 (643)
++.+. ++|+||+|.+-...-..|+
T Consensus 303 ~~k~~~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 303 EVKSTKTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HHHhcCCCCCEEEEEEecCCCCCChh
Confidence 98875 6999999999887655443
No 144
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=98.23 E-value=1.3e-05 Score=77.06 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=80.8
Q ss_pred cccccchHHHHHHHHh----CCCCeEEEEecCccccC--CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccccc
Q 040733 484 GSMGFGLPAAMGAAVA----NPGAIVVDIDGDGSFIM--NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRA 557 (643)
Q Consensus 484 g~mG~glpaAiGaalA----~p~~~Vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~ 557 (643)
|++|.||+.|+|.+++ ..+.+|.+++|||-+.= ++..+.+|++|+|+-+|.+++-|.. |...+-+.
T Consensus 119 GSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~------QldG~t~~-- 190 (243)
T COG3959 119 GSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKL------QLDGETEE-- 190 (243)
T ss_pred CcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCc------ccCCchhh--
Confidence 6677766666665554 55688999999999875 4778999999999866655554432 11100000
Q ss_pred ccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHhC-CCcEEEEEEe
Q 040733 558 NSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLET-PGPYLLDVMV 614 (643)
Q Consensus 558 ~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~~-~gp~lIeV~v 614 (643)
. ...-|+.+--+|||.+..+|+ +.+++.++++++... ++|.+|=+.+
T Consensus 191 ---i-------~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~T 240 (243)
T COG3959 191 ---I-------MPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKT 240 (243)
T ss_pred ---c-------cCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEec
Confidence 0 122378888999999999996 689999999998874 4999987765
No 145
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=8.4e-06 Score=89.55 Aligned_cols=117 Identities=24% Similarity=0.289 Sum_probs=92.4
Q ss_pred CcccccchHHHHHHHHhC---------C-----CCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVAN---------P-----GAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~---------p-----~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
-|.+|.|++.|+|.++|. | +..+.+++|||.+|=. .+| ..-|..++|.=+|++.++|...|-.
T Consensus 115 TGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG- 193 (663)
T COG0021 115 TGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDG- 193 (663)
T ss_pred cCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceecc-
Confidence 388999999999999983 2 3689999999999986 344 6778899999899999888765421
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCC---hhHHHHHHHHHHh-CCCcEEEEEEeCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK---KKDVRAAIQLMLE-TPGPYLLDVMVSYQE 618 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~---~~eL~~al~~al~-~~gp~lIeV~v~~~~ 618 (643)
. +. ....-|..+=.++||.+..++.+ .+++.+||++|.. +++|++|+|++--..
T Consensus 194 --------~---~~-------~~f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPtlI~~kTiIG~ 251 (663)
T COG0021 194 --------D---TS-------LSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIVKTIIGK 251 (663)
T ss_pred --------C---cc-------cccchhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCCeEEEEEeeeec
Confidence 1 10 01235889999999999997754 8899999999997 779999999985443
No 146
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=98.17 E-value=8.5e-06 Score=80.19 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=67.5
Q ss_pred cccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHH----HHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccc
Q 040733 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAA----IKAENIPVKILLINNQYLGMNVEYEDRYFEANRAN 558 (643)
Q Consensus 484 g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~T----a~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~ 558 (643)
|.+|++++.|+|+++.+++..|+|++|||.+.-. +...|. +..+++.-++.|++||+|.|-..
T Consensus 62 G~LG~gLs~A~G~a~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~p------------ 129 (227)
T cd02011 62 GELGYSLSHAYGAVFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNP------------ 129 (227)
T ss_pred cchhhHHHHHHHhhhcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCC------------
Confidence 7899999999999999999999999999995443 223333 23445665566667777776311
Q ss_pred cccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHH
Q 040733 559 SFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQ 599 (643)
Q Consensus 559 ~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~ 599 (643)
+.+ ......++.+.+++||.+.+.|+ +++++.++++
T Consensus 130 t~~-----~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a 167 (227)
T cd02011 130 TIL-----ARISHEELEALFRGYGYEPYFVEGDDPETMHQAMA 167 (227)
T ss_pred ccc-----cccCchhHHHHHHhCCCceEEECCCCHHHHHHHHH
Confidence 000 00124589999999999999995 4445444333
No 147
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=98.10 E-value=1.4e-05 Score=93.65 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=82.2
Q ss_pred CcccccchHHHHHHHHhC----CC------CeEEEEecCccc-cC-CHHH-HHHHHHhCCC---eEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVAN----PG------AIVVDIDGDGSF-IM-NLQE-LAAIKAENIP---VKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~----p~------~~Vv~i~GDGsf-~m-~~~e-L~Ta~~~~lp---v~ivV~NN~~~g~~~~ 546 (643)
.+.+|...|-|.|++.|. .+ .-+|++.|||+| .- .+.| |.-+.-.++| +++||.||+ ||+...
T Consensus 313 pShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq-~g~tT~ 391 (924)
T PRK09404 313 PSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQ-IGFTTS 391 (924)
T ss_pred ccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-EEEeeC
Confidence 355777788888888774 34 467889999998 34 3666 5556677887 777777765 676421
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe--CChhHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV--TKKKDVRAAIQLMLE----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V--~~~~eL~~al~~al~----~~gp~lIeV~v~~~ 617 (643)
..+ .....+..++|++||+++++| .+++.+..+.+.|++ .+||+|||+.+.|.
T Consensus 392 ~~~------------------~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~ 450 (924)
T PRK09404 392 PPD------------------DRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRR 450 (924)
T ss_pred HHH------------------hccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecC
Confidence 111 012346788999999999998 467777777766654 57999999999876
No 148
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=98.04 E-value=2.8e-05 Score=90.29 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=90.2
Q ss_pred CcccccchHHHHHHHHhCC-----------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHH
Q 040733 483 FGSMGFGLPAAMGAAVANP-----------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYED 549 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p-----------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~ 549 (643)
-|+||.|++.|+|.|++.. +++|+|++|||-++=. +..+..|.+++|+=+|+|+|+|...+-.
T Consensus 188 TGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG---- 263 (889)
T TIGR03186 188 TGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDG---- 263 (889)
T ss_pred CCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCC----
Confidence 3899999999999988521 5789999999999864 5568899999998888888888644310
Q ss_pred HhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC----------------------------------------
Q 040733 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT---------------------------------------- 589 (643)
Q Consensus 550 ~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~---------------------------------------- 589 (643)
..... ....-++++..++||.+.++|.
T Consensus 264 -----~t~~~--------~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~ 330 (889)
T TIGR03186 264 -----PVRGN--------GRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYN 330 (889)
T ss_pred -----ccccc--------cccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHH
Confidence 00000 0112478999999999998882
Q ss_pred -------------------------------ChhHHHHHHHHHHhC-CCcEEEEEEeCCCC
Q 040733 590 -------------------------------KKKDVRAAIQLMLET-PGPYLLDVMVSYQE 618 (643)
Q Consensus 590 -------------------------------~~~eL~~al~~al~~-~gp~lIeV~v~~~~ 618 (643)
+++++.+|+++|.+. ++|++|.+++-..-
T Consensus 331 R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~~~~PTvIla~TvkG~ 391 (889)
T TIGR03186 331 RARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRHEGRPTVILAKTMKGF 391 (889)
T ss_pred HHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeeecC
Confidence 688888999888864 69999999986543
No 149
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=98.03 E-value=9.3e-05 Score=79.02 Aligned_cols=155 Identities=21% Similarity=0.156 Sum_probs=122.3
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC----CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchh
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS----NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPG 143 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~----~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG 143 (643)
..++|.+++++.....|++.+.+||=+...++++.+.+. +..++..-+|.+|..|+.|-+.+..| +...|||||
T Consensus 4 ~~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~GA~~aGar--~~TaTSg~G 81 (365)
T COG0674 4 VVMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIGASYAGAR--AFTATSGQG 81 (365)
T ss_pred EeccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHHHHhhCcc--eEeecCCcc
Confidence 347899999999999999999999999999999988652 48999999999999999999977665 456799999
Q ss_pred hHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhcc-ceeeeE-eCCcCcHHHHHHHHHHHhhcCCCCe
Q 040733 144 VTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM-TKHNYL-VLDVDDIPRIIKEAFFIATSGRPGP 221 (643)
Q Consensus 144 ~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~-tk~~~~-v~~~~~i~~~l~~A~~~A~s~~~GP 221 (643)
++-...++.-|.-..+|+++...+++....+.--+ .||.+++... +-|-.. ..++++.-....+||..|..-+ =|
T Consensus 82 l~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~--~dq~D~~~~r~~g~~~~~~~s~qEa~d~t~~Af~iAe~~~-~P 158 (365)
T COG0674 82 LLLMAEALGLAAGTETPLVIVVAQRPLPSTGLPIK--GDQSDLMAARDTGFPILVSASVQEAFDLTLLAFNIAEKVL-TP 158 (365)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeccCcCCCccccc--ccHHHHHHHHccCceEEeeccHHHHHHHHHHHHHHHHHhc-CC
Confidence 99999999999999999999999988654442111 2344443321 222222 2267888889999999998744 78
Q ss_pred EEEEcc
Q 040733 222 VLIDIP 227 (643)
Q Consensus 222 V~i~iP 227 (643)
|.+..-
T Consensus 159 vi~~~D 164 (365)
T COG0674 159 VIVLLD 164 (365)
T ss_pred EEEeec
Confidence 877653
No 150
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=98.02 E-value=2.6e-05 Score=94.66 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=104.8
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHH---hhCC--------CeEEecCChhHHHHHHHHHHHHhCCcEEEE
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSL---TRSN--------IRSILPRHEQGGIFAAEGYARSSGTPGVCL 137 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al---~~~~--------i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~ 137 (643)
.|+|.++++....+ |++.+|+||=+++.++.+.+ .+.+ ..++..-+|.+|+.|+.|.+.+ |.. +..
T Consensus 3 ~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~~a-Gar-a~T 79 (1165)
T TIGR02176 3 TMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGALQT-GAL-TTT 79 (1165)
T ss_pred eeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHhhc-CCC-EEE
Confidence 47999999999988 99999999988888887777 3332 2799999999999999997754 433 456
Q ss_pred EccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhh-ccceeeeE-eCCcCcHHHHHHHHHHHhh
Q 040733 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR-YMTKHNYL-VLDVDDIPRIIKEAFFIAT 215 (643)
Q Consensus 138 ~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~-~~tk~~~~-v~~~~~i~~~l~~A~~~A~ 215 (643)
.|+|+|++-+...|..+...++|+|+...++.....+-.-+. |+.++++ --+-|... ..++++.......||.+|.
T Consensus 80 ~TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~i~~--dh~Dv~~~R~~G~ivl~s~svQEa~D~al~A~~lAe 157 (1165)
T TIGR02176 80 FTASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHALSIFG--DHQDVMAARQTGFAMLASSSVQEVMDLALVAHLATI 157 (1165)
T ss_pred ecChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCCccCC--CchHHHHhhcCCeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 799999999999998877779999999988754422211111 2222221 11223222 2455666667777777776
Q ss_pred cCCCCeEEEE
Q 040733 216 SGRPGPVLID 225 (643)
Q Consensus 216 s~~~GPV~i~ 225 (643)
..+ -||.+.
T Consensus 158 ~~~-~Pvi~~ 166 (1165)
T TIGR02176 158 EAR-VPFMHF 166 (1165)
T ss_pred hcC-CCEEEE
Confidence 544 365543
No 151
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=98.02 E-value=2.4e-05 Score=85.54 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=85.7
Q ss_pred cccccchHHHHHHHHh----CCCCeEEEEecCcccc--CCHHHHHHHH-HhCCCeEEEEEeCCCchh-------hHHHHH
Q 040733 484 GSMGFGLPAAMGAAVA----NPGAIVVDIDGDGSFI--MNLQELAAIK-AENIPVKILLINNQYLGM-------NVEYED 549 (643)
Q Consensus 484 g~mG~glpaAiGaalA----~p~~~Vv~i~GDGsf~--m~~~eL~Ta~-~~~lpv~ivV~NN~~~g~-------~~~~q~ 549 (643)
|--+.+|++|+|.+.| ..++.||+|+|||++- |.+..|..+. ..+-+ .|||+|+|...| -+++.+
T Consensus 115 GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~-~iVILNDNeMSIs~nvGal~~~L~~ 193 (627)
T COG1154 115 GHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSN-LIVILNDNEMSISPNVGALSKHLAR 193 (627)
T ss_pred CchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhhccCCC-EEEEEeCCCcccCCCccHHHHHHHH
Confidence 4455688999998876 3568899999999874 7777888887 33345 555666665533 233222
Q ss_pred Hhhcc-------cc--cccccCCCCCC------CC--CCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHhCCCcEE
Q 040733 550 RYFEA-------NR--ANSFLGDPLRK------SE--IFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLETPGPYL 609 (643)
Q Consensus 550 ~~~~~-------~~--~~~~~g~p~~~------~~--~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~~~gp~l 609 (643)
..... .. .-...|.+... +. .-..-..+.|.||.+|+-. ++.++|..+|+++.+.++|+|
T Consensus 194 l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~~gPvl 273 (627)
T COG1154 194 LRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKDLKGPVL 273 (627)
T ss_pred HhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhcCCCCEE
Confidence 11110 00 00001110000 00 0011125888999998854 678999999999999999999
Q ss_pred EEEEeCCCCCccc
Q 040733 610 LDVMVSYQEHVVP 622 (643)
Q Consensus 610 IeV~v~~~~~~~p 622 (643)
|+|++....-..|
T Consensus 274 lHv~T~KGKGY~p 286 (627)
T COG1154 274 LHVVTKKGKGYKP 286 (627)
T ss_pred EEEEecCCCCCCh
Confidence 9999987754443
No 152
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=98.00 E-value=4.1e-05 Score=89.48 Aligned_cols=118 Identities=22% Similarity=0.259 Sum_probs=83.7
Q ss_pred CCcccccchHHHHHHHHhC----C------CCeEEEEecCccc-cC-CHHH-HHHHHHhCCCe--EEEEEeCCCchhhHH
Q 040733 482 GFGSMGFGLPAAMGAAVAN----P------GAIVVDIDGDGSF-IM-NLQE-LAAIKAENIPV--KILLINNQYLGMNVE 546 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~----p------~~~Vv~i~GDGsf-~m-~~~e-L~Ta~~~~lpv--~ivV~NN~~~g~~~~ 546 (643)
+-+.+|...|-+.|.+.|. . +.-+|++.|||+| .. .+.| |.-+.-.++|+ +|+|+.||+||+...
T Consensus 313 npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~ 392 (929)
T TIGR00239 313 NPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTN 392 (929)
T ss_pred CCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEc
Confidence 3466888888899988874 2 3467899999998 44 3666 56677889998 455555556777531
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe--CChhHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV--TKKKDVRAAIQLMLE----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V--~~~~eL~~al~~al~----~~gp~lIeV~v~~~ 617 (643)
..+ ........+.|++||++++.| .+++.+..+.+.|++ .+||+|||+.+.|.
T Consensus 393 ~~~------------------~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~ 451 (929)
T TIGR00239 393 PLD------------------ARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRR 451 (929)
T ss_pred HHH------------------hcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccC
Confidence 110 012346778999999999999 466777777776654 57999999999765
No 153
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=97.95 E-value=2.1e-05 Score=89.33 Aligned_cols=182 Identities=15% Similarity=0.166 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHhcC--CCCCeEEEeCCChhHHHHHHhccccCC----CeE-------------EecCCCcccccchHHH
Q 040733 433 EIPPQYAIQILNELT--DDEETIISTGVGQHQMWAIQFYMYKRA----RQL-------------LTSSGFGSMGFGLPAA 493 (643)
Q Consensus 433 ~i~~~~~~~~L~~~l--~~~d~iv~~d~G~~~~~~~~~~~~~~p----~~~-------------~~~~~~g~mG~glpaA 493 (643)
.+.--.+--+|-.++ |. |-|| -|+|.. .+.-..+.-++. |++ +...+-|--+.++++|
T Consensus 122 nLGvVELTvALH~VFd~p~-Dkii-wDvgHQ-~Y~HKiLTGR~~~f~~Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaa 198 (701)
T PLN02225 122 SFAAIELTLALHYVFRAPV-DNIL-WDAVEQ-TYAHKVLTRRWSAIPSRQKNGISGVTSQLESEYDSFGTGHGCNSISAG 198 (701)
T ss_pred CccHHHHHHHHHHHhCCCC-Ccee-eccccc-cchhhHhcCChhhcCccccCCcCCCCCCCCCCCCCCCCChHHHHHHHH
Confidence 455556666666665 44 5555 588843 333333332211 221 1111224445579999
Q ss_pred HHHHHhC----CCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHH---------------HHHH--
Q 040733 494 MGAAVAN----PGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVE---------------YEDR-- 550 (643)
Q Consensus 494 iGaalA~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~---------------~q~~-- 550 (643)
+|.+.|+ .++.||+|+|||++. |.+..|..+...+-+ +|||+|+|.+.+-.. +...
T Consensus 199 lG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~-livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~ 277 (701)
T PLN02225 199 LGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQS 277 (701)
T ss_pred HHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCC-EEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhc
Confidence 9998884 567899999999985 677889999988877 556667766655433 1000
Q ss_pred --hhcc---cc--cccccCCCCC----------CCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHhCC--CcE
Q 040733 551 --YFEA---NR--ANSFLGDPLR----------KSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLETP--GPY 608 (643)
Q Consensus 551 --~~~~---~~--~~~~~g~p~~----------~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~~~--gp~ 608 (643)
.|.. .. .-...+.+.. .....+.=..+.|.+|..|+-. ++.++|.++|+++.+.+ +|+
T Consensus 278 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~Pv 357 (701)
T PLN02225 278 SKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPV 357 (701)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCE
Confidence 0000 00 0000000000 0000010014778899998854 67889999999988765 999
Q ss_pred EEEEEeCCCC
Q 040733 609 LLDVMVSYQE 618 (643)
Q Consensus 609 lIeV~v~~~~ 618 (643)
||+|.+....
T Consensus 358 lvHv~T~KGk 367 (701)
T PLN02225 358 LVHVITEENR 367 (701)
T ss_pred EEEEEecCCC
Confidence 9999998775
No 154
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=97.93 E-value=7.1e-05 Score=81.49 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=87.8
Q ss_pred CCcccccchHHHHHHHHhCC-----CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 482 GFGSMGFGLPAAMGAAVANP-----GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p-----~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
+-|.+|.||+.|+|.|++.. +.+|+|++|||..+=. ...++.|..++++-+|++++|+..++- .
T Consensus 116 ~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~---------g 186 (632)
T KOG0523|consen 116 ATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISID---------G 186 (632)
T ss_pred ccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCC---------C
Confidence 34889999999999988742 5689999999999864 444889999999999999999865531 0
Q ss_pred cccccccCCCCCCCCCCCCHHH-HHhHCCCCEEEe--CChhHHHHHHHHHH-hCCCcEEEEEEeCC
Q 040733 555 NRANSFLGDPLRKSEIFPDMLK-FAEACGIPAARV--TKKKDVRAAIQLML-ETPGPYLLDVMVSY 616 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~-lA~a~G~~~~~V--~~~~eL~~al~~al-~~~gp~lIeV~v~~ 616 (643)
.+. .....|..+ =.++||++...| ++.+++.+++.++. ..++|.+|-+.+-.
T Consensus 187 ---~t~-------~~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~k~kpt~i~~~t~~ 242 (632)
T KOG0523|consen 187 ---ATS-------LGFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSVKGKPTAIKATTFI 242 (632)
T ss_pred ---CCc-------ccccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhccCCceeeeeeeee
Confidence 011 123456666 789999999988 46788888888876 36788888777643
No 155
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=97.93 E-value=4.2e-05 Score=77.34 Aligned_cols=116 Identities=26% Similarity=0.359 Sum_probs=79.1
Q ss_pred CCCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 481 SGFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
+|.|..|..+|.+.|+++|. .+.-++++-|||+.... +..+..|.-.+||+++|+=|| +|||--.....
T Consensus 162 GGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN-~yGMGTs~~Ra---- 236 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENN-HYGMGTSAERA---- 236 (394)
T ss_pred CccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccC-CCccCcchhhh----
Confidence 66788888999999998884 35678899999999875 455777888899976665555 68874222111
Q ss_pred cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhH--HHHHHHHH----HhCCCcEEEEEEeCCC
Q 040733 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD--VRAAIQLM----LETPGPYLLDVMVSYQ 617 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~e--L~~al~~a----l~~~gp~lIeV~v~~~ 617 (643)
...+||=+=. .| +++.+|+--+- ++++.+.| ++.+||.|+|..+.+-
T Consensus 237 --------------sa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy 289 (394)
T KOG0225|consen 237 --------------SASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRY 289 (394)
T ss_pred --------------hcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeee
Confidence 2234444433 22 67778865543 35555544 4458999999998764
No 156
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=97.86 E-value=9.6e-05 Score=85.00 Aligned_cols=118 Identities=18% Similarity=0.124 Sum_probs=88.8
Q ss_pred cccccchHHHHHHHHhC-----------CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHH
Q 040733 484 GSMGFGLPAAMGAAVAN-----------PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDR 550 (643)
Q Consensus 484 g~mG~glpaAiGaalA~-----------p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~ 550 (643)
|+||.|++.|+|.|++. .+++|+|++|||-++=. ...+..|.+++|+=+|+|+|+|...+-.
T Consensus 189 GSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG----- 263 (885)
T TIGR00759 189 VSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDG----- 263 (885)
T ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCC-----
Confidence 89999999999988753 35789999999999863 5568889999998888888888643210
Q ss_pred hhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC-----------------------------------------
Q 040733 551 YFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT----------------------------------------- 589 (643)
Q Consensus 551 ~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~----------------------------------------- 589 (643)
..... ....-++++..++||.+.++|.
T Consensus 264 ----~v~~~--------~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R 331 (885)
T TIGR00759 264 ----PVRGN--------GKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVR 331 (885)
T ss_pred ----ccccc--------cccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHH
Confidence 00000 0012478888899999888872
Q ss_pred ------------------------------ChhHHHHHHHHHHhC-CCcEEEEEEeCCCC
Q 040733 590 ------------------------------KKKDVRAAIQLMLET-PGPYLLDVMVSYQE 618 (643)
Q Consensus 590 ------------------------------~~~eL~~al~~al~~-~gp~lIeV~v~~~~ 618 (643)
+++++.+|++++.+. ++|++|-+.+-..-
T Consensus 332 ~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~~grPTvIlA~TvKG~ 391 (885)
T TIGR00759 332 EHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEHKGQPTVILAKTIKGY 391 (885)
T ss_pred HHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhCCCCCEEEEEeeeecC
Confidence 678888899888764 58999999987654
No 157
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=97.83 E-value=9.1e-05 Score=67.00 Aligned_cols=75 Identities=25% Similarity=0.313 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCC-----------------CCCCcccccC
Q 040733 262 RQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPC-----------------TDELCLRMVG 322 (643)
Q Consensus 262 ~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~-----------------~hpl~lG~~g 322 (643)
+-++.++++||||++++|..+. +..+.+.+|+|+.++|+++|....+.+-+ .+|.|.|.-|
T Consensus 26 ~v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg 105 (170)
T COG1880 26 EVVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDG 105 (170)
T ss_pred HHHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCC
Confidence 3467899999999999999876 44567889999999999999765543322 1233332211
Q ss_pred CCCcHHHHHhhhcCCEEEEecCcc
Q 040733 323 MFGTVYANYAVNECDLLLAAGVRF 346 (643)
Q Consensus 323 ~~~~~~~~~~l~~aDlvL~vG~~~ 346 (643)
+ .+.|+||.+|+..
T Consensus 106 ---~-------g~yDlviflG~~~ 119 (170)
T COG1880 106 ---N-------GNYDLVIFLGSIY 119 (170)
T ss_pred ---C-------CCcceEEEEeccH
Confidence 1 2689999999985
No 158
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=97.82 E-value=0.00018 Score=83.84 Aligned_cols=119 Identities=19% Similarity=0.174 Sum_probs=91.4
Q ss_pred cccccchHHHHHHHHhCC-----------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHH
Q 040733 484 GSMGFGLPAAMGAAVANP-----------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDR 550 (643)
Q Consensus 484 g~mG~glpaAiGaalA~p-----------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~ 550 (643)
|+||.|++.|+|.++... +++|+|++|||-+.=. +..+..|.+++|+=+|+|+|.|...+-
T Consensus 195 gS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lD------ 268 (891)
T PRK09405 195 VSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLD------ 268 (891)
T ss_pred cccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccC------
Confidence 899999999999998765 6889999999999863 566899999999888888888763321
Q ss_pred hhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC-----------------------------------------
Q 040733 551 YFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT----------------------------------------- 589 (643)
Q Consensus 551 ~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~----------------------------------------- 589 (643)
...... ....-++++..++||.+.+.|.
T Consensus 269 ---G~v~~~--------~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R 337 (891)
T PRK09405 269 ---GPVRGN--------GKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVR 337 (891)
T ss_pred ---Cccccc--------cccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHH
Confidence 000000 0112488999999999999882
Q ss_pred ------------------------------ChhHHHHHHHHHHhC-CCcEEEEEEeCCCCC
Q 040733 590 ------------------------------KKKDVRAAIQLMLET-PGPYLLDVMVSYQEH 619 (643)
Q Consensus 590 ------------------------------~~~eL~~al~~al~~-~gp~lIeV~v~~~~~ 619 (643)
+.+++.+|++++.+. ++|++|-+.+-..-.
T Consensus 338 ~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~~~~PtvIia~TvkG~G 398 (891)
T PRK09405 338 EHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEHKGQPTVILAKTIKGYG 398 (891)
T ss_pred HHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhCCCCCEEEEEeceecCC
Confidence 688888999888864 889999999866543
No 159
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=97.78 E-value=0.00019 Score=83.92 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=90.6
Q ss_pred CcccccchHHHHHHHHhCC-----------CCeEEEEecCccccC--CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHH
Q 040733 483 FGSMGFGLPAAMGAAVANP-----------GAIVVDIDGDGSFIM--NLQELAAIKAENIPVKILLINNQYLGMNVEYED 549 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p-----------~~~Vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~ 549 (643)
-|+||.|++.|+|.|+... +++|+|++|||-+.= +...+..|.+++|+=+|+|+|+|...+-.
T Consensus 202 TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG---- 277 (896)
T PRK13012 202 TGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDG---- 277 (896)
T ss_pred CCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccC----
Confidence 3899999999999988743 378999999999986 35668889999998888888887643210
Q ss_pred HhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe--------------------------C--------------
Q 040733 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV--------------------------T-------------- 589 (643)
Q Consensus 550 ~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V--------------------------~-------------- 589 (643)
..... ....-++++..++||.+.++| +
T Consensus 278 -----~v~~~--------~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~ 344 (896)
T PRK13012 278 -----PVRGN--------GRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYN 344 (896)
T ss_pred -----ccccc--------cccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHH
Confidence 00000 011248899999999999988 3
Q ss_pred -------------------------------ChhHHHHHHHHHHh-CCCcEEEEEEeCCCC
Q 040733 590 -------------------------------KKKDVRAAIQLMLE-TPGPYLLDVMVSYQE 618 (643)
Q Consensus 590 -------------------------------~~~eL~~al~~al~-~~gp~lIeV~v~~~~ 618 (643)
+.+++.+|++++.+ .++|++|-+.+-..-
T Consensus 345 r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~~~~PtvIla~TvkG~ 405 (896)
T PRK13012 345 REHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRHKGQPTVILAKTKKGY 405 (896)
T ss_pred HHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeeecC
Confidence 78888999988875 568999999986654
No 160
>PRK05261 putative phosphoketolase; Provisional
Probab=97.68 E-value=0.00024 Score=81.69 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=77.4
Q ss_pred cccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHHH----HhCCCeEEEEEeCCCchhhHHHHHHhhcccccc
Q 040733 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIK----AENIPVKILLINNQYLGMNVEYEDRYFEANRAN 558 (643)
Q Consensus 484 g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta~----~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~ 558 (643)
|.+|+|++.|.|+++..++..|+|++|||.+.-. +...|-+. .+++.-++.|+++|+|.|-. .
T Consensus 142 G~LG~gls~A~G~Al~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~Is~----------p-- 209 (785)
T PRK05261 142 GELGYSLSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIAN----------P-- 209 (785)
T ss_pred CchhhHHHHHHHHHHcCCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcCCC----------C--
Confidence 7899999999999999999999999999994432 12223322 23454455555566666531 0
Q ss_pred cccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHH----HHHHHh-----------C---CCcE--EEEEEeCC
Q 040733 559 SFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAA----IQLMLE-----------T---PGPY--LLDVMVSY 616 (643)
Q Consensus 559 ~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~a----l~~al~-----------~---~gp~--lIeV~v~~ 616 (643)
+... ....-++.+..++||.+.+.|+ +++++.++ ++++++ . .+|. +|.+.+..
T Consensus 210 t~~~-----~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~k 284 (785)
T PRK05261 210 TILA-----RISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPK 284 (785)
T ss_pred cccc-----ccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCc
Confidence 0000 0122489999999999999986 55555544 222222 2 4788 99999876
Q ss_pred CC
Q 040733 617 QE 618 (643)
Q Consensus 617 ~~ 618 (643)
.-
T Consensus 285 G~ 286 (785)
T PRK05261 285 GW 286 (785)
T ss_pred cC
Confidence 53
No 161
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.67 E-value=0.00084 Score=81.85 Aligned_cols=112 Identities=15% Similarity=0.138 Sum_probs=83.0
Q ss_pred CeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHC
Q 040733 503 AIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC 581 (643)
Q Consensus 503 ~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~ 581 (643)
+.||++.||| ++-..++.|..+.+.|.++++||+||..|++...+.....+... .+.+ .|.......-|...+|.++
T Consensus 952 ~sv~~~~GDG~~~diG~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~-~t~~-~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGA-IAKF-AAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcC-cccc-CCCCCCCCCcCHHHHHHHC
Confidence 4799999999 56778999999999999999999999999986422111110000 0000 1222223456999999999
Q ss_pred CCCEE-Ee---CChhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 582 GIPAA-RV---TKKKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 582 G~~~~-~V---~~~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
|..|+ ++ .++.++.+++++|.+.+||.+|++..+-
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~~G~s~i~~~~pC 1068 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAYDGPSIVIAYSPC 1068 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 99876 33 2789999999999999999999999763
No 162
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=97.32 E-value=0.00036 Score=69.98 Aligned_cols=114 Identities=22% Similarity=0.272 Sum_probs=75.3
Q ss_pred ccccchHHHHHHHHhC-----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccccc
Q 040733 485 SMGFGLPAAMGAAVAN-----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRA 557 (643)
Q Consensus 485 ~mG~glpaAiGaalA~-----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~ 557 (643)
.+-..||-|+|++.+- .++-+|++.|||+.--. =..|.-|+-...|+++|+=|| ||.|--...+ .|..+-
T Consensus 194 platqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNN-G~AISTptse-Qyr~DG- 270 (432)
T KOG1182|consen 194 PLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNN-GWAISTPTSE-QYRGDG- 270 (432)
T ss_pred hhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCC-CeeeccccHH-HhcCCc-
Confidence 4455789999988763 35889999999988643 234667788899987776665 5776432211 121111
Q ss_pred ccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHH------HHHHHHHHhCCCcEEEEEEeCCC
Q 040733 558 NSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV------RAAIQLMLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 558 ~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL------~~al~~al~~~gp~lIeV~v~~~ 617 (643)
.+.=..+||+..+||+-.+-| ++|-+.++..++|+|||.++.+-
T Consensus 271 ----------------Ia~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRv 320 (432)
T KOG1182|consen 271 ----------------IAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRV 320 (432)
T ss_pred ----------------eEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhh
Confidence 112234799999999877654 34444456688999999987653
No 163
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=96.45 E-value=0.1 Score=48.89 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=79.9
Q ss_pred eEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH-HhhhCCCCEEEEeCCCcccc-cCCCCCCccCHHH
Q 040733 109 RSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLM-DAYSDSIPILAITGQVSQKL-LGTDAFQEIPVVE 185 (643)
Q Consensus 109 ~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~-~A~~~~vPvlvItg~~~~~~-~g~~~~Q~~d~~~ 185 (643)
|++ ....|++.+.+|.|.|.. |...++. +...=..-++..|. ++...+.||+++........ .+-..+|..++..
T Consensus 40 r~i~~gIaE~~~vg~A~GlA~~-G~~pi~~-~~~~f~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a 117 (156)
T cd07033 40 RFIDVGIAEQNMVGIAAGLALH-GLKPFVS-TFSFFLQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIA 117 (156)
T ss_pred CeEEeChhHHHHHHHHHHHHHC-CCeEEEE-ECHHHHHHHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHH
Confidence 444 678999999999999965 4433433 44445555667777 88889999999987443332 2223467788889
Q ss_pred Hhhccceee-eEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 186 VTRYMTKHN-YLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 186 ~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+++.+-... +...+++++..+++.|++. ++||+|.+|.
T Consensus 118 ~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~-----~~P~~irl~~ 156 (156)
T cd07033 118 LLRAIPNMTVLRPADANETAAALEAALEY-----DGPVYIRLPR 156 (156)
T ss_pred HhcCCCCCEEEecCCHHHHHHHHHHHHhC-----CCCEEEEeeC
Confidence 999886543 4466777888888888764 3699998873
No 164
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.45 E-value=0.012 Score=56.09 Aligned_cols=119 Identities=22% Similarity=0.152 Sum_probs=85.0
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~ 552 (643)
..+++....- +.+..+|-|.+.+. +|+.++++-=| ++...++.|.++...++|+++|.-.-.....-
T Consensus 39 ~i~~i~~~~E---~~A~~~A~g~ar~~-g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~-------- 106 (172)
T PF02776_consen 39 GIRFIPVRHE---QGAAFMADGYARAT-GRPGVVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEG-------- 106 (172)
T ss_dssp TSEEEE-SSH---HHHHHHHHHHHHHH-SSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTT--------
T ss_pred ceeeecccCc---chhHHHHHHHHHhh-ccceEEEeecccchHHHHHHHhhcccceeeEEEEecccchhhhc--------
Confidence 4566654432 22566778887776 56766666554 66777999999999999999988776653321
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 553 ~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
... .....|...+++.+....+++++++++.+++++|+. .+||+.|+++.|-
T Consensus 107 -----~~~-------~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv 163 (172)
T PF02776_consen 107 -----RGA-------FQQEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDV 163 (172)
T ss_dssp -----TTS-------TTSSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHH
T ss_pred -----ccc-------cccchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhH
Confidence 000 122568999999999999999999998888877653 6899999999764
No 165
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.41 E-value=0.15 Score=48.29 Aligned_cols=118 Identities=14% Similarity=0.041 Sum_probs=81.1
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEE-EecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVD-IDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~-i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~ 552 (643)
.-+++....-.+ +.-+|-|.+.+. +++.++ ++...++...+..+.+|...++|+++|.-+-.....
T Consensus 38 ~i~~v~~rhE~~---A~~mA~gyar~t-g~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~~--------- 104 (164)
T cd07039 38 KIEFIQVRHEEA---AAFAASAEAKLT-GKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDEL--------- 104 (164)
T ss_pred CCeEEEeCCHHH---HHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCccccc---------
Confidence 345555443322 445667777766 355554 444556666789999999999999998865442110
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEEEEEeCC
Q 040733 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLLDVMVSY 616 (643)
Q Consensus 553 ~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lIeV~v~~ 616 (643)
+ .. .....|...+++.+-....++++++++.+++++|+. ..||+.||++.|-
T Consensus 105 ~----~~--------~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~dv 160 (164)
T cd07039 105 G----TD--------YFQEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGDV 160 (164)
T ss_pred C----CC--------CCcccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChHH
Confidence 0 00 124468899999999999999999888877777663 5699999998763
No 166
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=96.40 E-value=0.019 Score=59.22 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCccccc--CCCCcHHHHHhh
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMV--GMFGTVYANYAV 333 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~--g~~~~~~~~~~l 333 (643)
-+++++++++.|.+||||+++-+.... ++.+.-.+++|++|+-+=.+-. +- .-|..+|.. |.-+ ....+.-
T Consensus 65 ~deAie~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~gaviD~~as----vc-hGp~~~alqe~g~p~-~TlgevK 138 (429)
T COG1029 65 YDEAIEKAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLGAVIDSNAS----VC-HGPSVLALQEAGKPT-ATLGEVK 138 (429)
T ss_pred HHHHHHHHHHHHHhccCceEeccccchHHHHHHHHHHHHHhCcEecCCCc----cc-cchHHHHHHhcCCcc-cchhhhc
Confidence 578999999999999999999777555 6788889999999986522110 00 012223221 2111 1112344
Q ss_pred hcCCEEEEecCccCcccc---Cccccc-----c----CCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHh
Q 040733 334 NECDLLLAAGVRFNERMT---SKLEDF-----A----TRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILE 399 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~t---~~~~~~-----~----~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~ 399 (643)
.++|+|+--|+..-+-.. .++..| . .+.++|.||+......+--..++.|. +|. +++.+|...+.
T Consensus 139 NraDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sDy-elisAl~~~l~ 217 (429)
T COG1029 139 NRADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSDY-ELISALRAALH 217 (429)
T ss_pred ccccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCcH-HHHHHHHHHhc
Confidence 689999999987533211 122222 1 23468888877665444322222222 454 45667776766
Q ss_pred hcC
Q 040733 400 SKG 402 (643)
Q Consensus 400 ~~~ 402 (643)
.+.
T Consensus 218 G~~ 220 (429)
T COG1029 218 GKE 220 (429)
T ss_pred CCC
Confidence 543
No 167
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.40 E-value=0.031 Score=52.15 Aligned_cols=104 Identities=22% Similarity=0.208 Sum_probs=76.4
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKS 568 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~ 568 (643)
+..+|.|.+.+....-++.++...+++..++.|.++...++|+++|..+-.....- . . .
T Consensus 46 A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~~~~~~~~-----------~-~---------~ 104 (155)
T cd07035 46 AVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEG-----------R-G---------A 104 (155)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCCCcccccc-----------C-C---------c
Confidence 67788888887633345555558888888999999999999999988765532210 0 0 0
Q ss_pred CCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----C-CCcEEEEEE
Q 040733 569 EIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE----T-PGPYLLDVM 613 (643)
Q Consensus 569 ~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~-~gp~lIeV~ 613 (643)
....|...+.+.+-....++++++++.+.+++++. . .||+.|++.
T Consensus 105 ~q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 105 FQEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred ccccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 13467888888887788999999999888888764 2 589999874
No 168
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=96.27 E-value=0.014 Score=54.79 Aligned_cols=111 Identities=23% Similarity=0.277 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCchhh--HHHHHHHHHHhCCceeecC-CCCCCCCCCCCCcccccCCCCcHHHHHhh---
Q 040733 260 ALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTT-MGLGLFPCTDELCLRMVGMFGTVYANYAV--- 333 (643)
Q Consensus 260 ~i~~~~~~L~~AkrPvIl~G~g~~~~--~~~l~~lae~lg~PV~tt~-~gkg~~~~~hpl~lG~~g~~~~~~~~~~l--- 333 (643)
.++.++++|++||||++++|..+... .+.........++|++.|. ..++.- +..|-| + .......+
T Consensus 23 ~~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~~~~~-d~~~ky-~------~~~~~~~l~~p 94 (167)
T PF02552_consen 23 PPEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNIIGMP-DYRPKY-P------KIEPENELNDP 94 (167)
T ss_dssp HSHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCHCCHC-SSGCCE--------HHHHHHHCCST
T ss_pred hHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeeccccccccc-cccccc-c------cccHHHhcCCC
Confidence 34788999999999999999988733 3445566777899999886 555542 212222 1 11111111
Q ss_pred --------hcCCEEEEecCccC--ccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 334 --------NECDLLLAAGVRFN--ERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 334 --------~~aDlvL~vG~~~~--~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
.+.|++|.+|...- ++.-..+..|.+..+++-++.... -.+++++
T Consensus 95 ~w~g~~g~g~~Dl~iFiGv~~yya~~~Ls~LK~ftp~~~t~~~~~~yh-----pnA~~Sf 149 (167)
T PF02552_consen 95 HWNGTDGHGNYDLVIFIGVHCYYANQVLSILKHFTPCLKTISCDRYYH-----PNADMSF 149 (167)
T ss_dssp T--TTTSS---SEEEEES--HHHHHHHHHHHHHH-TT-EEEE-SSS-------TTSSEEE
T ss_pred CCCccccCCcccEEEEecchHHHHHHHHHHHhccCCceEEEEeccccC-----CCcceec
Confidence 27899999998752 222222344666667777764332 2455665
No 169
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=95.72 E-value=0.91 Score=48.54 Aligned_cols=156 Identities=18% Similarity=0.073 Sum_probs=87.6
Q ss_pred CCcHHHHHHHHHHHCCC--CEEEEccCCCc-----HHHHHHHhh-CC-CeEE-ecCChhHHHHHHHHHHHHhCCcEEEEE
Q 040733 69 PRKGADIIVEALERQGV--TTVFAYPGGAS-----IEIHQSLTR-SN-IRSI-LPRHEQGGIFAAEGYARSSGTPGVCLV 138 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV--~~vFg~PG~~~-----~~l~~al~~-~~-i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~ 138 (643)
+++..+++.++|.+..- +.++.+.++-. ...++.|.+ .+ =|++ ...-|++++.+|.|+|....+|-|++
T Consensus 34 ~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~~- 112 (355)
T PTZ00182 34 KMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEF- 112 (355)
T ss_pred chHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEEe-
Confidence 44566666666665543 34555544422 333455543 32 3445 66899999999999999765655553
Q ss_pred ccchhhHHHHHHHHH--hhh-------CCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeee-EeCCcCcHHHHHH
Q 040733 139 SSGPGVTNIMTGLMD--AYS-------DSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIK 208 (643)
Q Consensus 139 t~GpG~~N~~~gl~~--A~~-------~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~ 208 (643)
...+=+..++--|.+ |+. -++||+++...-.....|....|.. ..+++.+..+.. ...++.++..+++
T Consensus 113 ~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~--ea~lr~iPn~~V~~Psd~~e~~~~l~ 190 (355)
T PTZ00182 113 MFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSF--EAYFAHVPGLKVVAPSDPEDAKGLLK 190 (355)
T ss_pred chhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchH--HHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 222222333333221 333 3788887743222212222122544 388888875444 3456677777777
Q ss_pred HHHHHhhcCCCCeEEEEcccchhh
Q 040733 209 EAFFIATSGRPGPVLIDIPVDVQL 232 (643)
Q Consensus 209 ~A~~~A~s~~~GPV~i~iP~Dv~~ 232 (643)
.|++ . +|||||-.|..+..
T Consensus 191 ~a~~----~-~~P~~i~~p~~l~r 209 (355)
T PTZ00182 191 AAIR----D-PNPVVFFEPKLLYR 209 (355)
T ss_pred HHHh----C-CCcEEEEeehHHhC
Confidence 6654 2 49999988876543
No 170
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=95.36 E-value=0.32 Score=47.38 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=93.5
Q ss_pred HHHHHHHCCC-CEEEEc-cCCCcHHHHHHHhhCC-CeEEecCCh---hHHHHHHHHHHHHh-CCcEEEEEccchhhHHHH
Q 040733 76 IVEALERQGV-TTVFAY-PGGASIEIHQSLTRSN-IRSILPRHE---QGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 76 lv~~L~~~GV-~~vFg~-PG~~~~~l~~al~~~~-i~~i~~~hE---~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~ 148 (643)
+++.|.+.-- +.++.. -|.+.......+.-.. -+++.+..= ..+.-+|.|.+.+. +|+.||++-=| ++.-.+
T Consensus 9 ~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG-~f~m~~ 87 (196)
T cd02013 9 VLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDG-AWGMSM 87 (196)
T ss_pred HHHHHHHHCCCCEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcch-HHhccH
Confidence 4444444322 333333 3443333333333222 555544321 23556888888775 56777665444 344457
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccc---------cCC----CCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhh
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKL---------LGT----DAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIAT 215 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~---------~g~----~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~ 215 (643)
..|..|...++|+++|.-+..... .+. ..+...|...+.+.+--..+++.+++++...+++|+....
T Consensus 88 ~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~ 167 (196)
T cd02013 88 MEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGAKGITVDKPEDVGPALQKAIAMMA 167 (196)
T ss_pred HHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCC
Confidence 899999999999999984433210 010 0233568888888887788899999999999998886443
Q ss_pred cCCCCeEEEEcccc
Q 040733 216 SGRPGPVLIDIPVD 229 (643)
Q Consensus 216 s~~~GPV~i~iP~D 229 (643)
+ .||+.|++..|
T Consensus 168 ~--~~p~liev~v~ 179 (196)
T cd02013 168 E--GKTTVIEIVCD 179 (196)
T ss_pred C--CCeEEEEEEeC
Confidence 3 58999999876
No 171
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=95.24 E-value=0.11 Score=49.71 Aligned_cols=116 Identities=17% Similarity=0.258 Sum_probs=76.7
Q ss_pred CeEEecCChh---HHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc-----cC----C
Q 040733 108 IRSILPRHEQ---GGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL-----LG----T 175 (643)
Q Consensus 108 i~~i~~~hE~---~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~-----~g----~ 175 (643)
-+++..+.=. .+.-+|.|.+.+.+|+.||++-=| ++.-.+..|..|...++|+++|.-+..... +. .
T Consensus 42 ~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDG-sf~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~ 120 (175)
T cd02009 42 VRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDL-SFLHDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFED 120 (175)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehH-HHHHhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccc
Confidence 5566554422 456788888877778877764333 333337899999999999999886443210 00 0
Q ss_pred --C-CC---CccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 176 --D-AF---QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 176 --~-~~---Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+ .+ ...|...+.+.+--..+++.+++++...+++|++ ..||+.|++..|
T Consensus 121 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lIev~v~ 175 (175)
T cd02009 121 EFERLFGTPQGLDFEHLAKAYGLEYRRVSSLDELEQALESALA-----QDGPHVIEVKTD 175 (175)
T ss_pred hhhhhhcCCCCCCHHHHHHHcCCCeeeCCCHHHHHHHHHHHHh-----CCCCEEEEEeCC
Confidence 0 01 2357777877775567788888888888888764 258999998754
No 172
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=95.23 E-value=0.15 Score=48.87 Aligned_cols=118 Identities=19% Similarity=0.135 Sum_probs=75.5
Q ss_pred eEE-ecCChhHHHHHHHHHHHHhC-CcEEEEEccchhhH----HHHHHHH-HhhhCCCCEEEEeCCCcccccCCCCCCcc
Q 040733 109 RSI-LPRHEQGGIFAAEGYARSSG-TPGVCLVSSGPGVT----NIMTGLM-DAYSDSIPILAITGQVSQKLLGTDAFQEI 181 (643)
Q Consensus 109 ~~i-~~~hE~~A~~~A~Gyar~sg-~~gv~~~t~GpG~~----N~~~gl~-~A~~~~vPvlvItg~~~~~~~g~~~~Q~~ 181 (643)
|++ ....|++.+.+|.|+|...+ ++.++. +.++=+. =....+. .....+.|+.+++...-....+-..+|..
T Consensus 49 r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~-~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s~ 127 (178)
T PF02779_consen 49 RFINTGIAEQNMVGMAAGLALAGGLRPPVES-TFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHSI 127 (178)
T ss_dssp TEEE--S-HHHHHHHHHHHHHHSSSEEEEEE-EEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSSS
T ss_pred eEEecCcchhhccceeeeeeecccccceeEe-eccccccccchhhhhhhhhhhhcccceecceeecCccccccccccccc
Confidence 455 57899999999999998775 666654 4444322 2333444 66677888774443222122223457888
Q ss_pred CHHHHhhccceeeeE-eCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccch
Q 040733 182 PVVEVTRYMTKHNYL-VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDV 230 (643)
Q Consensus 182 d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv 230 (643)
+...+++.+..+... ..++.++..+++.|++. ..+|||||..|...
T Consensus 128 ~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~---~~~~P~~ir~~r~~ 174 (178)
T PF02779_consen 128 EDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR---ESDGPVYIREPRGL 174 (178)
T ss_dssp SHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS---SSSSEEEEEEESSE
T ss_pred ccccccccccccccccCCCHHHHHHHHHHHHHh---CCCCeEEEEeeHHh
Confidence 999999999875554 56777888888777763 22599999998764
No 173
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=95.20 E-value=0.11 Score=49.55 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--------------CCCCccC
Q 040733 118 GGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--------------DAFQEIP 182 (643)
Q Consensus 118 ~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--------------~~~Q~~d 182 (643)
.+.-+|.|.+.+. .++.+|++-=| ++.-....+..|...++|+++|.-+......-+ ..+...|
T Consensus 52 ~~lp~AiGa~la~~~~~vv~i~GDG-~f~~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d 130 (172)
T cd02004 52 VGLGYAIAAALARPDKRVVLVEGDG-AFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTR 130 (172)
T ss_pred chHHHHHHHHHhCCCCeEEEEEcch-hhcCCHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCC
Confidence 3556778887776 46666664433 333347889999999999888875443211100 0123457
Q ss_pred HHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 183 ~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
...+.+.+--...++.+++++.+.+++|+. . +||+.|++..|
T Consensus 131 ~~~la~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~liev~i~ 172 (172)
T cd02004 131 YDLVAEAFGGKGELVTTPEELKPALKRALA----S-GKPALINVIID 172 (172)
T ss_pred HHHHHHHCCCeEEEECCHHHHHHHHHHHHH----c-CCCEEEEEEcC
Confidence 778888886677888887776666666543 2 58999998654
No 174
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=95.19 E-value=0.19 Score=47.60 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=76.1
Q ss_pred EEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCC-CCEEEEeCCCcccccCC-C-CCCccCHHHH
Q 040733 110 SILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDS-IPILAITGQVSQKLLGT-D-AFQEIPVVEV 186 (643)
Q Consensus 110 ~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~-vPvlvItg~~~~~~~g~-~-~~Q~~d~~~~ 186 (643)
+-....|++.+.+|.|+|....+|-++ +..+-+.-+...+..+-..+ +|+|+.... ....|. + .+|..++..+
T Consensus 52 ~~~gIaE~~~vg~a~GlA~~G~~pi~~--~~~~f~~~a~~~~~~~~~~~~~~~v~~~~~--g~~~g~~G~tH~~~~~~~~ 127 (168)
T smart00861 52 IDTGIAEQAMVGFAAGLALAGLRPVVA--IFFTFFDRAKDQIRSDGAMGRVPVVVRHDS--GGGVGEDGPTHHSQEDEAL 127 (168)
T ss_pred EEcCcCHHHHHHHHHHHHHcCCCcEEE--eeHHHHHHHHHHHHHhCcccCCCEEEEecC--ccccCCCCccccchhHHHH
Confidence 337889999999999999887654443 45565556666666555554 766655521 111233 3 3888899999
Q ss_pred hhccceee-eEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 187 TRYMTKHN-YLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 187 ~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
++.+.... +...+++++..+++.|+. ...||++|.++.
T Consensus 128 ~~~iP~~~v~~P~~~~e~~~~l~~a~~----~~~~p~~i~~~~ 166 (168)
T smart00861 128 LRAIPGLKVVAPSDPAEAKGLLRAAIR----RDDGPPVIRLER 166 (168)
T ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCCEEEEecC
Confidence 99887543 456777888888888873 235899998874
No 175
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=95.03 E-value=0.17 Score=47.07 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=78.7
Q ss_pred CeEEe---cCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc--------cCC
Q 040733 108 IRSIL---PRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL--------LGT 175 (643)
Q Consensus 108 i~~i~---~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~--------~g~ 175 (643)
-+++. .-.=..+.-+|.|.+.+. +++.||++-= -++...+..|..|...++|+++|.-+..... .+.
T Consensus 19 ~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GD-G~f~~~~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~ 97 (153)
T PF02775_consen 19 RRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGD-GSFLMSLQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGG 97 (153)
T ss_dssp TEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEH-HHHHHHGGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTS
T ss_pred CeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCC-cceeeccchhHHHhhccceEEEEEEeCCcceEeccccccCcC
Confidence 45554 223345678899999985 6666666543 4444458999999999999999987554221 111
Q ss_pred C--------CCCccCHHHHhhccceeeeEeCCc--CcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 176 D--------AFQEIPVVEVTRYMTKHNYLVLDV--DDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 176 ~--------~~Q~~d~~~~~~~~tk~~~~v~~~--~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+ .+..+|...+.+.+--..++++++ +++.+.+++|++ ..||++|+|
T Consensus 98 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~-----~~gp~vIeV 153 (153)
T PF02775_consen 98 GRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE-----SGGPAVIEV 153 (153)
T ss_dssp TCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH-----SSSEEEEEE
T ss_pred cccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh-----CCCcEEEEc
Confidence 1 145678888999885557888887 888888888872 359999986
No 176
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=94.99 E-value=1.1 Score=47.36 Aligned_cols=151 Identities=18% Similarity=0.112 Sum_probs=86.3
Q ss_pred CcHHHHHHHHHHHCCC--CEEEEccCCCc-----HHHHHHHh-hCC-CeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEc
Q 040733 70 RKGADIIVEALERQGV--TTVFAYPGGAS-----IEIHQSLT-RSN-IRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVS 139 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV--~~vFg~PG~~~-----~~l~~al~-~~~-i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t 139 (643)
++..+++.+.|.++.- +.++.+..+-. ..+.+.|. +.+ =|++ ...-|++++.+|.|.|....||-|++-.
T Consensus 4 ~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~~ 83 (327)
T PRK09212 4 LTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFMT 83 (327)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEeeh
Confidence 4556666666665542 34555544321 11123332 232 3555 5679999999999999977777776432
Q ss_pred ---cchhhHHHHHHHHHhhh-------CCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeE-eCCcCcHHHHHH
Q 040733 140 ---SGPGVTNIMTGLMDAYS-------DSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYL-VLDVDDIPRIIK 208 (643)
Q Consensus 140 ---~GpG~~N~~~gl~~A~~-------~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~ 208 (643)
...+.-.+..-+ |+. -++||++....-+....|....|.. ..+++.+...... ..++.++..+++
T Consensus 84 ~~f~~ra~dQi~~d~--a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~--ea~~r~iP~l~V~~P~d~~e~~~~l~ 159 (327)
T PRK09212 84 FNFSMQAIDQIVNSA--AKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCY--AAWYSHIPGLKVVAPYFAADCKGLLK 159 (327)
T ss_pred hhHHHHHHHHHHHHH--HHHhhccCCCcCccEEEEeCCCCCCCCCcccccCH--HHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 112222222322 233 2799988865433322222222444 3889988754443 556777777777
Q ss_pred HHHHHhhcCCCCeEEEEcccc
Q 040733 209 EAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 209 ~A~~~A~s~~~GPV~i~iP~D 229 (643)
.|++ . ++||+|-.|..
T Consensus 160 ~a~~----~-~~Pv~i~~~~~ 175 (327)
T PRK09212 160 TAIR----D-PNPVIFLENEI 175 (327)
T ss_pred HHHh----C-CCcEEEEEchh
Confidence 7764 2 48999966654
No 177
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=94.70 E-value=0.16 Score=52.98 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=75.3
Q ss_pred cEEEEcC-Cch--hhHHHHHHHHHHhCCceeecCC---CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccC
Q 040733 274 PVLCVGG-GCL--NSSEELRKFVGLTGIPVTCTTM---GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFN 347 (643)
Q Consensus 274 PvIl~G~-g~~--~~~~~l~~lae~lg~PV~tt~~---gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~ 347 (643)
.+|++|+ |.. +..+.+++||+.+|.-|-.|-. ..|.+|. ...+|..| . .-.+||.|.+|-+=.
T Consensus 195 ~vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~gW~p~--~~QIGqTG---k------~V~P~lYiA~GISGA 263 (312)
T PRK11916 195 KRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMER--ERYIGVSG---V------LLKSDLYLTLGISGQ 263 (312)
T ss_pred CEEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccCCCCCh--hcEECCCC---C------CcCccEEEEeccccH
Confidence 3566544 554 3567899999999999988742 2357765 44455544 2 236799999997732
Q ss_pred ccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 348 ERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 348 ~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
-....+ ......||-|+.|++..= ...+|+.|++|+.++|.+|.+.++
T Consensus 264 iQH~aG---m~~s~~IVAIN~Dp~API-F~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 264 IQHMVG---GNGAKVIVAINKDKNAPI-FNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred HHHHhh---cccCCEEEEECCCCCCCc-hhhCCeeEeeeHHHHHHHHHHHhh
Confidence 221111 223456999999997421 235899999999999999987753
No 178
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=94.66 E-value=1 Score=42.50 Aligned_cols=122 Identities=19% Similarity=0.098 Sum_probs=78.8
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
.-+++....- +.+.-+|-|.+.+. +--|+.++...++...+..|.+|...+.|+++|.-+...-..- .
T Consensus 35 ~i~~i~~rhE---~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~--------~ 102 (162)
T cd07038 35 GLRWVGNCNE---LNAGYAADGYARVK-GLGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQA--------S 102 (162)
T ss_pred CceEEeeCCH---HHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecCCCccccc--------c
Confidence 3455554332 22566777777776 4334455567777778999999999999999998765421100 0
Q ss_pred ccccccccCCCCCCCCCCC-CHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEEEEE
Q 040733 554 ANRANSFLGDPLRKSEIFP-DMLKFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLLDVM 613 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~-d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lIeV~ 613 (643)
....+...+ .... |...+.+.+.....+|++++++.+.+++|+. .+||+.||++
T Consensus 103 ~~~~~~~~~------~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 103 GLLLHHTLG------DGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred ccceeeccc------ccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 000000000 0122 5788999999999999999988887777653 4589999874
No 179
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=94.63 E-value=0.21 Score=46.25 Aligned_cols=102 Identities=21% Similarity=0.187 Sum_probs=69.6
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+..+|.|++.+.. +.++.++ |.|. ...+..|.++...++|+++++-.....+. .. .
T Consensus 47 a~~~A~G~a~~~~-~~v~~~~~gpg~-~~~~~~l~~a~~~~~Pvl~i~~~~~~~~~---------~~---~--------- 103 (154)
T cd06586 47 AAGAAAGYARAGG-PPVVIVTSGTGL-LNAINGLADAAAEHLPVVFLIGARGISAQ---------AK---Q--------- 103 (154)
T ss_pred HHHHHHHHHHhhC-CEEEEEcCCCcH-HHHHHHHHHHHhcCCCEEEEeCCCChhhh---------cc---C---------
Confidence 6788889888874 5555556 6654 45577788999999997777744432110 00 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEE
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVM 613 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~ 613 (643)
.....|...+++.+.....++.+.++..+.+.+++ ..+||++|++.
T Consensus 104 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 104 TFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred cccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 02346778888888888888888888776666654 35789999874
No 180
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=94.60 E-value=1.5 Score=41.92 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=75.9
Q ss_pred CeEEecCChhH---HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCccccc--------CC
Q 040733 108 IRSILPRHEQG---GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLL--------GT 175 (643)
Q Consensus 108 i~~i~~~hE~~---A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~--------g~ 175 (643)
-+++....=.. +.-+|.|.+.+. +++.||++.=|.-..+ +..+..|...++|+++|.-+.....+ +.
T Consensus 42 ~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~-~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~ 120 (178)
T cd02014 42 QRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAML-MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQ 120 (178)
T ss_pred CcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhh-HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcC
Confidence 45554433233 455777877665 5677777655555545 67889999999999999865542211 10
Q ss_pred C----CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 176 D----AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 176 ~----~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
. .++..|...+.+.+--..+.+.+++++...+++|++ ..||+.|++..|
T Consensus 121 ~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l~~a~~-----~~~p~liev~~~ 173 (178)
T cd02014 121 PEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAALDEALA-----ADGPVVIDVVTD 173 (178)
T ss_pred CceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeC
Confidence 0 123467788888875567788888887776666654 248999998764
No 181
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=94.52 E-value=0.15 Score=54.14 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=76.3
Q ss_pred cEEEEcC-Cch--hhHHHHHHHHHHhCCceeecC--CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCc
Q 040733 274 PVLCVGG-GCL--NSSEELRKFVGLTGIPVTCTT--MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNE 348 (643)
Q Consensus 274 PvIl~G~-g~~--~~~~~l~~lae~lg~PV~tt~--~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~ 348 (643)
.+|++|+ |.. +..+.+++||+.+|.-|-.|- --.|.+|. ...+|..|. .-.+||.|.+|-+=.-
T Consensus 238 ~vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp~vD~GW~p~--~~QIGqTGk---------~V~P~lYIA~GISGAi 306 (356)
T PLN00022 238 KVVVTGGRGLKSAENFKMLEKLADKLGGAVGASRAAVDAGFVPN--DLQVGQTGK---------IVAPELYIAVGISGAI 306 (356)
T ss_pred CEEEECCCccCCHHHHHHHHHHHHHhCCceeccHHHHhCCCCCh--HheeccCCC---------CcCCcEEEEEecchHH
Confidence 4666655 554 356789999999999998773 23466764 445555442 2367999999977321
Q ss_pred cccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 349 RMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 349 ~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
.... -......||-|+.|++.-= ...+|+.|++|+.++|.+|.+.++.
T Consensus 307 QH~~---Gm~~s~~IVAIN~D~~API-F~~ADygIVgD~~evlP~Lie~lk~ 354 (356)
T PLN00022 307 QHLA---GMKDSKVIVAINKDADAPI-FQVADYGLVADLFEAVPELLEKLPE 354 (356)
T ss_pred HHHh---hcccCCEEEEECCCCCCCc-hhhcCeeEeeeHHHHHHHHHHHHHh
Confidence 1111 1223456899999987421 2358999999999999999988764
No 182
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=94.48 E-value=0.21 Score=54.54 Aligned_cols=137 Identities=15% Similarity=0.174 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhh
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVN 334 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~ 334 (643)
.-+++++.+++.|+++++|+++.|+... .....+.+|++.+|..+- +.......+..+.+.. .|..+.. ..++..
T Consensus 55 sWdeAl~~ia~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~--~g~~~~~-~~di~~ 130 (415)
T cd02761 55 SLEEAIEKAAEILKEAKRPLFYGLGTTVCEAQRAGIELAEKLGAIID-HAASVCHGPNLLALQD--SGWPTTT-LGEVKN 130 (415)
T ss_pred CcHHHHHHHHHHHHhhcCCEEEEcccchHHHHHHHHHHHHHHCCCcc-ccccccccchHHHHHh--CCCcccc-HHHHHh
Confidence 4678999999999999999887444333 345678899999997432 1111111111111111 1222111 223335
Q ss_pred cCCEEEEecCccCccccCcc-c------cc-----cCCceEEEEcCCcccccCCCCCCeeEe---cCHHHHHHHHHHHH
Q 040733 335 ECDLLLAAGVRFNERMTSKL-E------DF-----ATRAKIVHIDIDSNEIGKVKLPDVSIC---ADAKLVFNRMNMIL 398 (643)
Q Consensus 335 ~aDlvL~vG~~~~~~~t~~~-~------~~-----~~~~~iI~Id~d~~~i~~~~~~~~~i~---~D~~~~L~~L~~~l 398 (643)
++|+||++|+.+.+.....+ . .+ ...+|+|.||+......+ .++..+. ++-..++..|...+
T Consensus 131 ~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~--~Ad~~l~i~pgtd~~l~~~l~~~l 207 (415)
T cd02761 131 RADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAK--LADIHLQIDPGSDYELLAALRALL 207 (415)
T ss_pred cCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhh--hcceEEecCCCCcHHHHHHHHHHH
Confidence 89999999998643321111 0 11 234689999987776644 2344343 33334444555444
No 183
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=94.43 E-value=0.76 Score=50.87 Aligned_cols=149 Identities=15% Similarity=0.079 Sum_probs=93.5
Q ss_pred CCCCcHHHHHHHHHHHCCCC--EEEEccCC-----C----cHHHHHHHhhCCCeEE-ecCChhHHHHHHHHHHHHhCCcE
Q 040733 67 DKPRKGADIIVEALERQGVT--TVFAYPGG-----A----SIEIHQSLTRSNIRSI-LPRHEQGGIFAAEGYARSSGTPG 134 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~--~vFg~PG~-----~----~~~l~~al~~~~i~~i-~~~hE~~A~~~A~Gyar~sg~~g 134 (643)
...++..+++.++|.++.-+ .||.+-.+ . ...|.+.+.. =|++ ...-|++.+.+|.|.|....||-
T Consensus 139 ~~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp--~R~id~gIaEq~~vg~AaGlA~~G~rPi 216 (464)
T PRK11892 139 MVTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGA--RRVIDTPITEHGFAGIGVGAAFAGLKPI 216 (464)
T ss_pred ccchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCc--cceeecCccHHHHHHHHHHHHhCCCEEE
Confidence 34456777777777666532 35554321 1 2345554421 2555 56799999999999999877777
Q ss_pred EEEEccchhhHHHHHHHH-Hhh--------hCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeee-EeCCcCcHH
Q 040733 135 VCLVSSGPGVTNIMTGLM-DAY--------SDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNY-LVLDVDDIP 204 (643)
Q Consensus 135 v~~~t~GpG~~N~~~gl~-~A~--------~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~ 204 (643)
|.+.++- =+..++.-|. ++. ..+.||+++..+-+... .+.+|..+...+++.+-.... ...++.++.
T Consensus 217 v~~~~~~-f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~--~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~ 293 (464)
T PRK11892 217 VEFMTFN-FAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR--VAAQHSQDYAAWYSHIPGLKVVAPYSAADAK 293 (464)
T ss_pred EEEehHH-HHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC--CCCccccCHHHHHhhCCCCEEEEeCCHHHHH
Confidence 7654321 1223333332 223 67899999865444332 445888888999999876544 356777888
Q ss_pred HHHHHHHHHhhcCCCCeEEEE
Q 040733 205 RIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 205 ~~l~~A~~~A~s~~~GPV~i~ 225 (643)
.+++.|++. ++|||+-
T Consensus 294 ~ll~~ai~~-----~~Pv~il 309 (464)
T PRK11892 294 GLLKAAIRD-----PNPVIFL 309 (464)
T ss_pred HHHHHHhhC-----CCcEEEE
Confidence 887777642 4899984
No 184
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=94.33 E-value=0.29 Score=48.07 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=85.6
Q ss_pred EEEEccCCCcHHHHHHHhhCC-CeEEecCC---hhHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCE
Q 040733 87 TVFAYPGGASIEIHQSLTRSN-IRSILPRH---EQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPI 161 (643)
Q Consensus 87 ~vFg~PG~~~~~l~~al~~~~-i~~i~~~h---E~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPv 161 (643)
.++.=.|.+...+...+.-.. -+++.... =.-+.-+|.|.+.+. +++.||++-=| ++.-....|..|...++|+
T Consensus 17 ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv 95 (205)
T cd02003 17 VVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDG-SYLMLHSEIVTAVQEGLKI 95 (205)
T ss_pred EEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccc-hhhccHHHHHHHHHcCCCC
Confidence 344445666555555543222 45554322 122445777877665 46666664444 4444457888899999999
Q ss_pred EEEeCCCcccc--------cCCC------------------CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhh
Q 040733 162 LAITGQVSQKL--------LGTD------------------AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIAT 215 (643)
Q Consensus 162 lvItg~~~~~~--------~g~~------------------~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~ 215 (643)
++|.-+..... .+.. ..+..|...+.+.+--...++.+++++...+++|+.
T Consensus 96 ~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~--- 172 (205)
T cd02003 96 IIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAKA--- 172 (205)
T ss_pred EEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHHh---
Confidence 88886543211 0100 013467788888886667889998888888888763
Q ss_pred cCCCCeEEEEcccc
Q 040733 216 SGRPGPVLIDIPVD 229 (643)
Q Consensus 216 s~~~GPV~i~iP~D 229 (643)
.+||+.|++..|
T Consensus 173 --~~gp~lIeV~v~ 184 (205)
T cd02003 173 --SDRTTVIVIKTD 184 (205)
T ss_pred --CCCCEEEEEEee
Confidence 358999999876
No 185
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=94.24 E-value=0.41 Score=45.86 Aligned_cols=104 Identities=22% Similarity=0.245 Sum_probs=70.0
Q ss_pred HHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCccccc---------CCC---CCCccCHHHH
Q 040733 120 IFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLL---------GTD---AFQEIPVVEV 186 (643)
Q Consensus 120 ~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~---------g~~---~~Q~~d~~~~ 186 (643)
.-+|.|.+.+. +++.||++-=|- +.=....|..|...++|+++|.-+...... +.. .++..|...+
T Consensus 54 lp~aiGa~la~~~~~vv~i~GDG~-f~m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~ 132 (177)
T cd02010 54 LPGAIGAKLVYPDRKVVAVSGDGG-FMMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKY 132 (177)
T ss_pred HHHHHHHHHhCCCCcEEEEEcchH-HHhHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHH
Confidence 34777777765 466776654443 333346788899999999999754331110 000 1234577778
Q ss_pred hhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 187 ~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+.+--..+++.+++++...+++|+. .+||..|+++.|
T Consensus 133 a~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~liev~~~ 170 (177)
T cd02010 133 AESFGAKGYRIESADDLLPVLERALA-----ADGVHVIDCPVD 170 (177)
T ss_pred HHHCCCEEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 88886677899998888888888764 358999999876
No 186
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.18 E-value=1.1 Score=42.34 Aligned_cols=114 Identities=14% Similarity=0.046 Sum_probs=75.4
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....- ..+.-+|-|.+.+. +++.|+++. --++...+..|.+|...+.|+++|.-+-.... .+
T Consensus 36 i~~v~~rhE---~~A~~mAdgyar~s-g~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~---------~~ 102 (162)
T cd07037 36 FRLHVRVDE---RSAAFFALGLAKAS-GRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPEL---------RG 102 (162)
T ss_pred ceEEeccCh---HHHHHHHHHHHHhh-CCCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEECCCCHHh---------cC
Confidence 455544332 22566777887776 466665554 44555568999999999999988885322110 00
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhH------HHHHHHHHHh-----CCCcEEEEEE
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD------VRAAIQLMLE-----TPGPYLLDVM 613 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~e------L~~al~~al~-----~~gp~lIeV~ 613 (643)
+ . .....|-..+.+.+-....+++++++ +.+.+++|+. .+||++||++
T Consensus 103 -~---~--------~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 103 -T---G--------ANQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred -C---C--------CCcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 0 0 02346777888888888889988887 6777766653 4689999985
No 187
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=94.16 E-value=0.22 Score=51.97 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=75.4
Q ss_pred cEEEEcC-Cch--hhHHHHHHHHHHhCCceeecCC---CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccC
Q 040733 274 PVLCVGG-GCL--NSSEELRKFVGLTGIPVTCTTM---GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFN 347 (643)
Q Consensus 274 PvIl~G~-g~~--~~~~~l~~lae~lg~PV~tt~~---gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~ 347 (643)
.+|++|+ |.. +..+.+++||+.+|.-|-.|-. ..|.+| |...+|..|. .-.+||.|.+|-+=.
T Consensus 196 ~vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p--~~~QIGqTGk---------~V~P~lYiA~GISGa 264 (313)
T PRK03363 196 RLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWME--HERYVGISNL---------MLKPELYLAVGISGQ 264 (313)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCC--HHheecCCCC---------CcCccEEEEEccccH
Confidence 4666655 554 3457799999999999988742 235777 4455665542 236799999997732
Q ss_pred ccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 348 ERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 348 ~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
-.... -......||-|+.||+..= ...+|+.|++|+.++|..|.+.++
T Consensus 265 iQH~~---Gm~~s~~IVAIN~Dp~API-F~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 265 IQHMV---GANASQTIFAINKDKNAPI-FQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred HHHHh---hcccCCEEEEEcCCCCCCc-hhhCCeeEeeeHHHHHHHHHHHhh
Confidence 11111 1223456899999997421 235899999999999999988764
No 188
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=94.07 E-value=0.12 Score=52.12 Aligned_cols=68 Identities=25% Similarity=0.256 Sum_probs=50.0
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
+...++++|++|++|+++.-....++.. ..+++++|.|+.++..+.. ..++.+.+|+.++|..|.+.+
T Consensus 171 a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~--~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 171 AYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDS--LFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred HHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCC--ccCEEEECCHHHHHHHHHHHh
Confidence 4456789999999999975322222222 2356789999999887654 368999999999999987654
No 189
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=93.98 E-value=0.32 Score=56.41 Aligned_cols=155 Identities=14% Similarity=0.032 Sum_probs=97.1
Q ss_pred CCcHHHHHHHHHHHCC--CCEEEEccCC-CcHHHHHH-----HhhC-CCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEE
Q 040733 69 PRKGADIIVEALERQG--VTTVFAYPGG-ASIEIHQS-----LTRS-NIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLV 138 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~G--V~~vFg~PG~-~~~~l~~a-----l~~~-~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~ 138 (643)
++...++..+.|.+.+ ...++++.++ ......+. +.+. +=|+| ...-|++++.+|.|+|+..|...++ .
T Consensus 348 ~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~-~ 426 (653)
T TIGR00232 348 ALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKPYG-G 426 (653)
T ss_pred chHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeEEE-E
Confidence 3445555666665543 3456665444 11111111 3222 22544 5889999999999999987864444 5
Q ss_pred ccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhhcccee-eeEeCCcCcHHHHHHHHHHHhh
Q 040733 139 SSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRYMTKH-NYLVLDVDDIPRIIKEAFFIAT 215 (643)
Q Consensus 139 t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~ 215 (643)
|..+=+.=+...+..+...+.||+++....... .|. ..+|.+.+..+++.+... .+...++.++..+++.|+.
T Consensus 427 tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~-~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~--- 502 (653)
T TIGR00232 427 TFLMFVDYARPAIRLAALMKLPVIYVYTHDSIG-VGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALE--- 502 (653)
T ss_pred EhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccC-CCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh---
Confidence 666655566778888889999999887432222 232 257989999999987642 3344555556555555542
Q ss_pred cCCCCeEEEEcccc
Q 040733 216 SGRPGPVLIDIPVD 229 (643)
Q Consensus 216 s~~~GPV~i~iP~D 229 (643)
...||+||.++..
T Consensus 503 -~~~gP~~irl~r~ 515 (653)
T TIGR00232 503 -SQDGPTALILSRQ 515 (653)
T ss_pred -cCCCcEEEEEcCC
Confidence 3469999999875
No 190
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=93.82 E-value=0.47 Score=45.72 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc---------cCC-----CCCCccCH
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL---------LGT-----DAFQEIPV 183 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~---------~g~-----~~~Q~~d~ 183 (643)
+.-+|.|.+.+. +++.||++-=| ++.-.+..|..|...++|+++|.-+..... .+. ......|.
T Consensus 55 ~lp~aiGa~la~~~~~vv~i~GDG-~f~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 133 (186)
T cd02015 55 GLPAAIGAKVARPDKTVICIDGDG-SFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDF 133 (186)
T ss_pred hHHHHHHHHHhCCCCeEEEEEccc-HHhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCH
Confidence 556778877765 46666664433 555566789999999999999886554311 010 01123577
Q ss_pred HHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 184 VEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 184 ~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..+.+.+--+..++.+.+++.+.+++|+. ..||+.|++..|
T Consensus 134 ~~~a~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~liev~~~ 174 (186)
T cd02015 134 VKLAEAYGIKGLRVEKPEELEAALKEALA-----SDGPVLLDVLVD 174 (186)
T ss_pred HHHHHHCCCceEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeC
Confidence 88888887778899988888777777764 358999999876
No 191
>PRK12753 transketolase; Reviewed
Probab=93.82 E-value=0.44 Score=55.28 Aligned_cols=115 Identities=17% Similarity=0.040 Sum_probs=81.3
Q ss_pred EEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCC--CCCccCHHHHh
Q 040733 110 SILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVVEVT 187 (643)
Q Consensus 110 ~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~~~~ 187 (643)
+-...-|++++.+|.|.|.-.|...+ +.|..+=+.=+...|..+...+.||+++........ |.+ .+|.+.+..++
T Consensus 405 i~~GIaEq~mv~~aaGlA~~~G~~P~-~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~-G~DG~THq~iedla~l 482 (663)
T PRK12753 405 IHYGVREFGMTAIANGIAHHGGFVPY-TATFLMFVEYARNAARMAALMKARQIMVYTHDSIGL-GEDGPTHQPVEQLASL 482 (663)
T ss_pred EEeeecHHHHHHHHHHHHHhCCCeEE-EEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCccc-CCCCcccccHHHHHHH
Confidence 33667899999999999987775333 456677667788888888999999999844333322 433 58999999999
Q ss_pred hccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 188 ~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
|.+.. ..|-.|.|.. .+..+++.|.....||+||.++..
T Consensus 483 R~iPn--~~v~~PaD~~-E~~~~~~~al~~~~gP~~irl~R~ 521 (663)
T PRK12753 483 RLTPN--FSTWRPCDQV-EAAVAWKLAIERHNGPTALILSRQ 521 (663)
T ss_pred hcCCC--CEEEccCCHH-HHHHHHHHHHhcCCCCEEEEecCC
Confidence 99873 3444455432 234555555544469999999975
No 192
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=93.79 E-value=0.89 Score=44.49 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCccccc---------CC--------C----
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLL---------GT--------D---- 176 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~---------g~--------~---- 176 (643)
+.-+|.|.+.+. +|+.||++-=| ++.=.+..|..|...++|+++|.-+...... +. .
T Consensus 62 ~lpaaiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~ 140 (202)
T cd02006 62 TVPAALGVAAADPDRQVVALSGDY-DFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSS 140 (202)
T ss_pred hhHHHHhHHhhCCCCeEEEEEeCh-HhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcccccccccccccc
Confidence 445788877765 46666665333 3333447899999999999999865442110 00 0
Q ss_pred --CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 177 --AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 177 --~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..+..|...+.+.+--..+++.+++++...+++|+..... ..||+.|+|..|
T Consensus 141 ~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~-~~~p~liev~i~ 194 (202)
T cd02006 141 ELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAE-HRVPVVVEAILE 194 (202)
T ss_pred ccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhccc-CCCcEEEEEEec
Confidence 0123677888888877789999999999999988865322 248999999765
No 193
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=93.79 E-value=0.13 Score=51.94 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=50.4
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
+.+.+.++|++|++|+++.-.....+.. ....+++|.|+.++..++. ..++.+.+|+.++|.+|.+.+
T Consensus 172 ~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~--~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 172 AIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD--IATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred HHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc--ceeEEEeCCHHHHHHHHHHHh
Confidence 4456789999999999986443333321 2245789999998877664 468999999999999987643
No 194
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=93.78 E-value=0.89 Score=42.63 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=68.9
Q ss_pred ccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHH-HhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCC
Q 040733 487 GFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIK-AENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPL 565 (643)
Q Consensus 487 G~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~-~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~ 565 (643)
+.+.+.|-|+.++. ++.+|++.+=| +...++.|.++. .+++|+++|+-.-+.++-..-.|..
T Consensus 44 e~aa~~aAg~~~~~-~~~~v~~~~sG-~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~--------------- 106 (157)
T TIGR03845 44 EEGVGICAGAYLAG-KKPAILMQSSG-LGNSINALASLNKTYGIPLPILASWRGVYKEKIPAQIP--------------- 106 (157)
T ss_pred HHHHHHHHHHHHhc-CCcEEEEeCCc-HHHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccc---------------
Confidence 44677777777764 67888888887 566789999999 9999999998655543321100100
Q ss_pred CCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEE
Q 040733 566 RKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVM 613 (643)
Q Consensus 566 ~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~ 613 (643)
...--..+-+.+++++.++++++++ .++++|+ +.+||+.|=+.
T Consensus 107 ----~g~~~~~~l~~~~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 107 ----MGRATPKLLDTLGIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred ----hhhhhHHHHHHcCCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 0000111224456689999999998 8888776 35689877553
No 195
>PTZ00089 transketolase; Provisional
Probab=93.71 E-value=0.42 Score=55.50 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=79.4
Q ss_pred EecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhh
Q 040733 111 ILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTR 188 (643)
Q Consensus 111 i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~ 188 (643)
-...-|++++.+|.|.|...|.. .++.|..+=..=+...|..+...+.||+++....... .|. ..+|-+.+..++|
T Consensus 407 ~~GIaEq~mv~~AaGlA~~~G~~-P~~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~-~g~DG~THq~iedia~lR 484 (661)
T PTZ00089 407 RFGVREHAMCAIMNGIAAHGGFI-PFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIG-LGEDGPTHQPVETLALLR 484 (661)
T ss_pred eeeecHHHHHHHHHHHHHcCCCe-EEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCcee-cCCCCCCcccHHHHHHHh
Confidence 36678999999999999966632 2334566666678888999999999999995222221 233 2589999999999
Q ss_pred ccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 189 YMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 189 ~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+. +..|..|.+..+ +..+++.|.....||+||.+|..
T Consensus 485 ~iP--n~~V~~PaD~~E-~~~~l~~al~~~~gP~~irl~R~ 522 (661)
T PTZ00089 485 ATP--NLLVIRPADGTE-TSGAYALALANAKTPTILCLSRQ 522 (661)
T ss_pred cCC--CcEEEecCCHHH-HHHHHHHHHHcCCCCEEEEecCC
Confidence 986 344444554333 24455555534569999999976
No 196
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=93.69 E-value=2.4 Score=39.63 Aligned_cols=136 Identities=12% Similarity=0.004 Sum_probs=81.2
Q ss_pred CEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH-HHHHHHHhhhC-CCCEEE
Q 040733 86 TTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN-IMTGLMDAYSD-SIPILA 163 (643)
Q Consensus 86 ~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N-~~~gl~~A~~~-~vPvlv 163 (643)
..|.+=.|.....++... +.+-+++..-.=..+.-+|.|.+.+..++.||++ |=|... .+..+..+... ++|+++
T Consensus 15 ~~vv~d~G~~~~~~~~~~-~~~~~~~~~gsmG~~lp~AiGa~~a~~~~Vv~i~--GDG~f~m~~~el~t~~~~~~~~i~~ 91 (157)
T cd02001 15 TPIVSTTGYASRELYDVQ-DRDGHFYMLGSMGLAGSIGLGLALGLSRKVIVVD--GDGSLLMNPGVLLTAGEFTPLNLIL 91 (157)
T ss_pred CEEEeCCCHhHHHHHHhh-cCCCCEEeecchhhHHHHHHHHHhcCCCcEEEEE--CchHHHhcccHHHHHHHhcCCCEEE
Confidence 345555565544442221 2224554422222233478888877766666654 444443 34566776666 599999
Q ss_pred EeCCCcccc-cC-CCCCC-ccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 164 ITGQVSQKL-LG-TDAFQ-EIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 164 Itg~~~~~~-~g-~~~~Q-~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
|.-+..... .+ +...+ ..|...+.+.+--..+++.+++++.+.+++|+. ..||+.|++..|
T Consensus 92 vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~vi~v~i~ 155 (157)
T cd02001 92 VVLDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-----TTGPTLLHAPIA 155 (157)
T ss_pred EEEeCccccccCCcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 986544321 11 11222 467888888876667888888888877777764 358999998764
No 197
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=93.63 E-value=0.11 Score=52.34 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=46.5
Q ss_pred HHHhhhcCCEEEEecCccCccccCccc-cccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLE-DFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRM 394 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L 394 (643)
+...+++||++|+||+++.-.....+. .....+++|.|+.++.........++.+.+|+.++|..|
T Consensus 169 ~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 169 MEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 345678999999999998543322222 122356788899888765533557899999999998764
No 198
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=93.54 E-value=1 Score=52.13 Aligned_cols=152 Identities=14% Similarity=0.069 Sum_probs=96.1
Q ss_pred CcHHHHHHHHHHHCCCC--EEEEc----cCCCcHHHHHHHhh-CCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccc
Q 040733 70 RKGADIIVEALERQGVT--TVFAY----PGGASIEIHQSLTR-SNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSG 141 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~--~vFg~----PG~~~~~l~~al~~-~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~G 141 (643)
.+.++++.++|.+..-+ .|+.+ +|+.-+ +.|.+ .+=|++ ...-|++++.+|.|.|...-+|-|++ ..
T Consensus 356 ~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl---~~f~~~fP~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~--fs 430 (677)
T PLN02582 356 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFARRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI--YS 430 (677)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEeCCCCCccch---HHHHHHcCccccccCcCHHHHHHHHHHHHHCCCeEEEEe--cH
Confidence 36778888888876543 45554 443322 23332 233444 56789999999999999666666654 45
Q ss_pred hhhHHHHHH-HHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 142 PGVTNIMTG-LMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 142 pG~~N~~~g-l~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
+=..-++.- +.++...+.||+++.-........-..+|.+....+++.+..+.. ...++.++..+++.|+. ..+
T Consensus 431 ~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al~----~~~ 506 (677)
T PLN02582 431 SFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAA----IDD 506 (677)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----CCC
Confidence 444455553 366678899998775322221111224777788888998875444 34566667767666654 235
Q ss_pred CeEEEEcccch
Q 040733 220 GPVLIDIPVDV 230 (643)
Q Consensus 220 GPV~i~iP~Dv 230 (643)
|||+|..|...
T Consensus 507 gPv~IR~pr~~ 517 (677)
T PLN02582 507 RPSCFRYPRGN 517 (677)
T ss_pred CCEEEEEecCC
Confidence 99999999763
No 199
>PLN02790 transketolase
Probab=93.50 E-value=0.43 Score=55.36 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=78.3
Q ss_pred EecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHh
Q 040733 111 ILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVT 187 (643)
Q Consensus 111 i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~ 187 (643)
-...-|++++.+|.|.|+.. |..-+| .|..+=.+-+...+..+...+.||+++....... .|. ..+|-+.+..++
T Consensus 396 ~~GIaEq~mv~~AaGlA~~G~G~~P~~-~tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~-~G~DG~THq~iedla~l 473 (654)
T PLN02790 396 RFGVREHGMGAICNGIALHSSGLIPYC-ATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIG-LGEDGPTHQPIEHLASL 473 (654)
T ss_pred EeeechHHHHHHHHHHHhcCCCcEEEE-EecHHHHHHHHHHHHHHHhcCCCeEEEEECCcee-ecCCCCCcccHHHHHHh
Confidence 36678999999999999975 653333 4666655667778888899999998886332222 243 258999999999
Q ss_pred hccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 188 ~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
|.+.. ..|-.|.+..++ ..+++.|.....||++|.+|..
T Consensus 474 R~iPn--l~V~~PaD~~E~-~~~l~~al~~~~gP~~irl~R~ 512 (654)
T PLN02790 474 RAMPN--ILMLRPADGNET-AGAYKVAVTNRKRPTVLALSRQ 512 (654)
T ss_pred cCCCC--cEEEeCCCHHHH-HHHHHHHHHcCCCCEEEEecCC
Confidence 99874 334444443332 3345555443469999999986
No 200
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=93.32 E-value=0.33 Score=50.35 Aligned_cols=111 Identities=19% Similarity=0.233 Sum_probs=74.7
Q ss_pred EEEEcCCch---hhHHHHHHHHHHhCCceeecCC--CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCcc
Q 040733 275 VLCVGGGCL---NSSEELRKFVGLTGIPVTCTTM--GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNER 349 (643)
Q Consensus 275 vIl~G~g~~---~~~~~l~~lae~lg~PV~tt~~--gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~ 349 (643)
+|+.|+... +..+.+.+||+.+|.-|-.|-. -.|.+|.+ +.+|..|. .-.+||-|++|-+=.-.
T Consensus 197 iVVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~gw~p~d--~QVGqTGk---------~V~P~LYIA~GISGAiQ 265 (313)
T COG2025 197 IVVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDAGWMPND--RQVGQTGK---------TVAPKLYIALGISGAIQ 265 (313)
T ss_pred EEEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhcCCCCcc--ceecCCCc---------EecccEEEEEecccHHH
Confidence 566655333 3345579999999999988732 26777764 45665442 34789999999663211
Q ss_pred ccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 350 MTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 350 ~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
... -......||-|+.|++.- =...+|+.|++|+..++.+|.+.|..
T Consensus 266 Hla---Gm~~Sk~IVAINkD~nAP-IF~~ADyGiVgDl~~ivP~Lie~l~~ 312 (313)
T COG2025 266 HLA---GMKDSKVIVAINKDPNAP-IFQVADYGIVGDLFKIVPALIEALKK 312 (313)
T ss_pred HHh---hcccCcEEEEEcCCCCCC-ccccCCeeeeeeHHHHHHHHHHHHhc
Confidence 111 122345688999988742 12468999999999999999987753
No 201
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=93.27 E-value=1.4 Score=41.83 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=69.2
Q ss_pred cCCC-eEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHH-H-HHHHHh--------CCCeEEEEEeCCC
Q 040733 472 KRAR-QLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQE-L-AAIKAE--------NIPVKILLINNQY 540 (643)
Q Consensus 472 ~~p~-~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~e-L-~Ta~~~--------~lpv~ivV~NN~~ 540 (643)
.-|. +++..+- +=-..++.|.|.++. ++++|+-+.=+.|+.-.-| | ..+... ++|++++. ..++
T Consensus 40 ~~p~~R~~~~gI--aEq~~vg~AaGlA~~--G~~pi~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~-~~gg 114 (167)
T cd07036 40 KFGPDRVIDTPI--AEAGIVGLAVGAAMN--GLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRG-PNGG 114 (167)
T ss_pred hCCCceEEeCCC--cHHHHHHHHHHHHHc--CCEEEEEeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEE-eCCC
Confidence 4466 7776432 112257777887775 4556655556667653222 3 223333 58888776 5555
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
++.. + . .+...+..+.+++ |+..+...++.|++..++.+++.++|+++-
T Consensus 115 ~~~~--------G-~-------------ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~~P~~~~ 164 (167)
T cd07036 115 GIGG--------G-A-------------QHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDDPVIFL 164 (167)
T ss_pred CCCc--------C-h-------------hhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 3310 0 0 0112335666666 788888899999999999999999999763
No 202
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=93.25 E-value=0.74 Score=44.74 Aligned_cols=149 Identities=14% Similarity=0.089 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHHCCC---CE-EEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhH
Q 040733 71 KGADIIVEALERQGV---TT-VFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVT 145 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV---~~-vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~ 145 (643)
..-+++.+++.+.|+ +. ++.=-|. .......+ .+....... ..+.-+|.|.+.+. +|+.|+++-=|--+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~d~ii~~D~G~-~~~~~~~~---~~~~~~g~m-G~glpaAiGa~la~p~r~Vv~i~GDGs~f~ 83 (193)
T cd03375 9 SILKALAKALAELGIDPEKVVVVSGIGC-SSRLPYYF---NTYGFHTLH-GRALAVATGVKLANPDLTVIVVSGDGDLAA 83 (193)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCh-hceehhhc---cccchhhhh-ccHHHHHHHHHHhCCCCeEEEEeccchHhh
Confidence 356788888888886 33 4443443 22111111 111111000 22445888888876 466666543333223
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccc-cC----------C---CCC-----CccCHHHHhhcc-ceee--eEeCCcCcH
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKL-LG----------T---DAF-----QEIPVVEVTRYM-TKHN--YLVLDVDDI 203 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~-~g----------~---~~~-----Q~~d~~~~~~~~-tk~~--~~v~~~~~i 203 (643)
-.+..+..|...++||++|.-+..... .+ . ... ...|...+.+.+ .++. .++.+++++
T Consensus 84 m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el 163 (193)
T cd03375 84 IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQL 163 (193)
T ss_pred ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHH
Confidence 446889999999999999886443211 00 0 000 124666677766 2332 357788888
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 204 PRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 204 ~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
...+++|++ .+||+.|++..+
T Consensus 164 ~~al~~al~-----~~gp~vIev~~~ 184 (193)
T cd03375 164 KEIIKKAIQ-----HKGFSFVEVLSP 184 (193)
T ss_pred HHHHHHHHh-----cCCCEEEEEECC
Confidence 777777764 358999998654
No 203
>PRK12754 transketolase; Reviewed
Probab=93.16 E-value=0.61 Score=53.97 Aligned_cols=155 Identities=15% Similarity=0.037 Sum_probs=99.6
Q ss_pred CcHHHHHHHHHHHCC--CCEEEEccCCCc-HHH-----HHHHhhC-CCe-EEecCChhHHHHHHHHHHHHhCCcEEEEEc
Q 040733 70 RKGADIIVEALERQG--VTTVFAYPGGAS-IEI-----HQSLTRS-NIR-SILPRHEQGGIFAAEGYARSSGTPGVCLVS 139 (643)
Q Consensus 70 ~~~a~~lv~~L~~~G--V~~vFg~PG~~~-~~l-----~~al~~~-~i~-~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t 139 (643)
+...++..+.|.+.+ ...++++.++-. ... .+.+.+. +=| +-...-|++++.+|-|.|...|. -.++.|
T Consensus 355 ~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G~-~Pf~~t 433 (663)
T PRK12754 355 IASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGIALHGGF-LPYTST 433 (663)
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccCCCCeEeeccchhhHHHHHhhHHhcCCC-eEEEEe
Confidence 344456666666654 455666655421 111 1233222 124 44677899999999999987774 333456
Q ss_pred cchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCC--CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 140 SGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 140 ~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
..+=..-+...|..+...+.||+++........ |.+ .+|.+.+..++|.+. +..|-.|.+..+ +..+++.|...
T Consensus 434 f~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~-G~DG~THq~iEdla~lR~iP--n~~V~~PaD~~E-~~~~~~~a~~~ 509 (663)
T PRK12754 434 FLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL-GEDGPTHQPVEQVASLRVTP--NMSTWRPCDQVE-SAVAWKYGVER 509 (663)
T ss_pred eHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc-CCCCCCcccHHHHHHHhcCC--CcEEecCCCHHH-HHHHHHHHHhC
Confidence 677666788888888999999988764433332 433 589999999999987 444445555333 24555555544
Q ss_pred CCCeEEEEcccc
Q 040733 218 RPGPVLIDIPVD 229 (643)
Q Consensus 218 ~~GPV~i~iP~D 229 (643)
..||+||.++..
T Consensus 510 ~~gP~yirl~R~ 521 (663)
T PRK12754 510 QDGPTALILSRQ 521 (663)
T ss_pred CCCCEEEEeCCC
Confidence 569999999874
No 204
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=93.14 E-value=1.1 Score=41.80 Aligned_cols=114 Identities=16% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccC-CHHHHH-HHHHhCCCeEEEEEeCCCchhhHHHHHHh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM-NLQELA-AIKAENIPVKILLINNQYLGMNVEYEDRY 551 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m-~~~eL~-Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~ 551 (643)
|.+++..+- +=...++.|.|.++.. -++++... ..|.. ....|- .+...++|+++++- ..+++.-
T Consensus 38 p~r~i~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~--~~f~~ra~dqi~~~~a~~~~pv~~~~~-~~g~~~~------- 104 (156)
T cd07033 38 PDRFIDVGI--AEQNMVGIAAGLALHG-LKPFVSTF--SFFLQRAYDQIRHDVALQNLPVKFVGT-HAGISVG------- 104 (156)
T ss_pred CCCeEEeCh--hHHHHHHHHHHHHHCC-CeEEEEEC--HHHHHHHHHHHHHHHhccCCCeEEEEE-CCcEecC-------
Confidence 566665321 1122567777888764 45555544 44443 355566 67788899887554 4433210
Q ss_pred hcccccccccCCCCCCCCCCCCHHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEEEE
Q 040733 552 FEANRANSFLGDPLRKSEIFPDMLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLLDV 612 (643)
Q Consensus 552 ~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lIeV 612 (643)
.... .....+...+.+.+ |+.-+...+++|++..++++++.++|++|-.
T Consensus 105 -~~G~-----------tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 105 -EDGP-----------THQGIEDIALLRAIPNMTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred -CCCc-----------ccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 0000 11233333444444 6677788999999999999999888998754
No 205
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=93.10 E-value=3.3 Score=39.78 Aligned_cols=106 Identities=14% Similarity=0.154 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhC-CcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCccccc-----CC----CCCCccCHHHHhh
Q 040733 119 GIFAAEGYARSSG-TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLL-----GT----DAFQEIPVVEVTR 188 (643)
Q Consensus 119 A~~~A~Gyar~sg-~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~-----g~----~~~Q~~d~~~~~~ 188 (643)
+.-+|.|.+-+.. ++.+|++- --++.-.+..+..|...++|+++|.-+.....+ +. ..++..|...+.+
T Consensus 55 ~l~~aiGaala~~~~~vv~i~G-DG~f~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~ 133 (183)
T cd02005 55 SVPAALGAALAAPDRRVILLVG-DGSFQMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPE 133 (183)
T ss_pred hHHHHHHHHHhCCCCeEEEEEC-CchhhccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHH
Confidence 3456777776664 55555533 233333456788999999999999865442211 11 1223457777777
Q ss_pred ccc----eeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 189 YMT----KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 189 ~~t----k~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+- -+..++.+++++.+.+++|++ + .+||+.|++..|
T Consensus 134 a~G~~~~~~~~~v~~~~el~~al~~a~~---~-~~~p~liev~~~ 174 (183)
T cd02005 134 VFGGGGGGLSFRVKTEGELDEALKDALF---N-RDKLSLIEVILP 174 (183)
T ss_pred HhCCCccccEEEecCHHHHHHHHHHHHh---c-CCCcEEEEEEcC
Confidence 764 456788888888887777775 1 258999999765
No 206
>PRK07524 hypothetical protein; Provisional
Probab=92.91 E-value=0.69 Score=52.47 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=79.1
Q ss_pred cchHHHHHHHHhCCCCe-EEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCC
Q 040733 488 FGLPAAMGAAVANPGAI-VVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLR 566 (643)
Q Consensus 488 ~glpaAiGaalA~p~~~-Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~ 566 (643)
.+.-+|-|.+... +++ |++++..-|+...++.|.+|.+.++|+++|.-...... ++.+. ..+
T Consensus 50 ~A~~mAdgyar~t-g~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~---------~~~~~--~~~----- 112 (535)
T PRK07524 50 GAGFMADGYARVS-GKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRAS---------LGKGR--GKL----- 112 (535)
T ss_pred HHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCChhh---------cCCCC--ccc-----
Confidence 3677888888877 455 44455555666678999999999999999886433210 01000 000
Q ss_pred CCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 567 KSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 567 ~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
...+|-..+.+.+-....+|++++++.+.+++|+. ..||+.|+++.|-.
T Consensus 113 --~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (535)
T PRK07524 113 --HELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVL 166 (535)
T ss_pred --cccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhHH
Confidence 12358889999999999999999999888888774 46899999997753
No 207
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=92.74 E-value=0.43 Score=50.26 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=53.2
Q ss_pred HhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCC----CCCCeeEecCHHHHHHHHHHHHh
Q 040733 331 YAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKV----KLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 331 ~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~----~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
..++++|+||++.+.+...-+++.. +...+++.||+.|....|- .-..+.++.|+..||..|.+.|.
T Consensus 335 ~~~~~a~~vimlaTmLHSIAtGNm~--Ps~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 335 ELLQGADMVLMLSTMLHSIAVGNLL--PSGVKTICVDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred HHhccCCeehhHHHHHHHHhhcccc--cccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHh
Confidence 4678999999999999877777643 3446999999999987653 33468899999999999987664
No 208
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=92.68 E-value=4 Score=38.67 Aligned_cols=148 Identities=17% Similarity=0.088 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCC----cHHHHHHHhhC-C-CeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 72 GADIIVEALERQGVTTVFAYPGGA----SIEIHQSLTRS-N-IRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~----~~~l~~al~~~-~-i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
.++.|.+.+++. -+.++.-..-. .....+.|.+. + .|++ ....|++.+.+|.|+|+..-+|-++ .+..+=+
T Consensus 3 ~~~~l~~~~~~~-~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~-~~~a~Fl 80 (167)
T cd07036 3 INEALDEEMERD-PRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVE-IMFADFA 80 (167)
T ss_pred HHHHHHHHHhcC-CCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEE-eehHHHH
Confidence 355666665544 33333322211 13455666654 4 4787 5689999999999999865443333 3555544
Q ss_pred HHHHHHHHH--hhhC-------CCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeE-eCCcCcHHHHHHHHHHHh
Q 040733 145 TNIMTGLMD--AYSD-------SIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYL-VLDVDDIPRIIKEAFFIA 214 (643)
Q Consensus 145 ~N~~~gl~~--A~~~-------~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~A 214 (643)
..++--|.. |+.+ +.||+++...-.. .+.+..|......+++.+-..... ..++.++..+++.+++.
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~--~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~- 157 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGG--IGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRD- 157 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCC--CCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC-
Confidence 455554422 3333 5899988632221 223333444457899988655443 45667777777777652
Q ss_pred hcCCCCeEEEEccc
Q 040733 215 TSGRPGPVLIDIPV 228 (643)
Q Consensus 215 ~s~~~GPV~i~iP~ 228 (643)
+|||.+--|+
T Consensus 158 ----~~P~~~~e~k 167 (167)
T cd07036 158 ----DDPVIFLEHK 167 (167)
T ss_pred ----CCcEEEEecC
Confidence 3899987663
No 209
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=92.50 E-value=0.33 Score=51.99 Aligned_cols=109 Identities=21% Similarity=0.196 Sum_probs=69.7
Q ss_pred cccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHH---HHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccC
Q 040733 486 MGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAA---IKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLG 562 (643)
Q Consensus 486 mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~T---a~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g 562 (643)
=|-+++.|.|+.++...+++|.+ =-.|+.-.++-|.. ..-|++|+++||--=+.+|....-|+...
T Consensus 35 E~~av~iaaG~~latG~~~~v~m-QnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~---------- 103 (361)
T TIGR03297 35 EGAAVGLAAGAYLATGKRAAVYM-QNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQ---------- 103 (361)
T ss_pred chHHHHHHHHHHHhcCCccEEEE-ecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHH----------
Confidence 46689999999999755555554 45555555665544 46799999998865554442211111111
Q ss_pred CCCCCCCCCCCHHHHHhHCCCCEEEe-CChhHH----HHHHHHHHhCCCcEEEEEE
Q 040733 563 DPLRKSEIFPDMLKFAEACGIPAARV-TKKKDV----RAAIQLMLETPGPYLLDVM 613 (643)
Q Consensus 563 ~p~~~~~~~~d~~~lA~a~G~~~~~V-~~~~eL----~~al~~al~~~gp~lIeV~ 613 (643)
.---.++-+++|+++..+ ++.+|. .++++.+++.++|+.|-|.
T Consensus 104 --------G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 104 --------GRITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred --------hHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 112357889999999999 455554 4555556668889877654
No 210
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=92.37 E-value=0.89 Score=49.68 Aligned_cols=137 Identities=11% Similarity=0.110 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccc--cCCCCcHHHHHh
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRM--VGMFGTVYANYA 332 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~--~g~~~~~~~~~~ 332 (643)
.-+++++.+++.|.++++++++.|++.. .....+.+|++.+|..+-. .+ .+. ..+...+. .|.... ...++
T Consensus 61 sWdeAl~~ia~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~~~g~~~~~--~~--~~~-~~~~~~~~~~~g~~~~-~~~di 134 (421)
T TIGR03129 61 SYEEAIEKAAEILKNAKRPLIYGWSSTSCEAQRAGLELAEKLGAVIDN--TA--SVC-HGPSLLALQEVGWPSC-TLGEV 134 (421)
T ss_pred ChHHHHHHHHHHHHhhcCCeEEEcccCCHHHHHHHHHHHHHHCCCccc--cc--hhc-cccHHHHHHhcCCccc-cHHHH
Confidence 4678999999999999998887665443 3445678999988864311 01 010 00111110 111111 12233
Q ss_pred hhcCCEEEEecCccCccccC---cc--------ccc-cCCceEEEEcCCcccccCCCCCCeeEe-cCHHHHHHHHHHHH
Q 040733 333 VNECDLLLAAGVRFNERMTS---KL--------EDF-ATRAKIVHIDIDSNEIGKVKLPDVSIC-ADAKLVFNRMNMIL 398 (643)
Q Consensus 333 l~~aDlvL~vG~~~~~~~t~---~~--------~~~-~~~~~iI~Id~d~~~i~~~~~~~~~i~-~D~~~~L~~L~~~l 398 (643)
..++|+||++|+.+.+.... ++ ... ...+++|.||+........-...+.+. ++-..++..|...+
T Consensus 135 ~~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l~i~pgtd~~l~~~l~~~l 213 (421)
T TIGR03129 135 KNRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQIKPGSDYELISALRAVL 213 (421)
T ss_pred hhcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhcceeccCCCCcHHHHHHHHHHH
Confidence 34799999999986432111 01 011 234689999987776654322222222 22234444555444
No 211
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=92.36 E-value=3.5 Score=39.60 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhCCcEEEEEccchhhHH-HHHHHHHhhhCC-CCEEEEeCCCccc-ccC---CCCCCccCHHHHhhccce
Q 040733 119 GIFAAEGYARSSGTPGVCLVSSGPGVTN-IMTGLMDAYSDS-IPILAITGQVSQK-LLG---TDAFQEIPVVEVTRYMTK 192 (643)
Q Consensus 119 A~~~A~Gyar~sg~~gv~~~t~GpG~~N-~~~gl~~A~~~~-vPvlvItg~~~~~-~~g---~~~~Q~~d~~~~~~~~tk 192 (643)
+.-+|.|.+.+.+++.||++ |=|... .+..+..|...+ .|+++|.-+.... ..+ .......|...+.+.+--
T Consensus 47 ~lpaAiGa~la~~~~Vv~i~--GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~G~ 124 (181)
T TIGR03846 47 ASSIGLGLALATDRTVIVID--GDGSLLMNLGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAAGI 124 (181)
T ss_pred HHHHHHHHHHcCCCcEEEEE--cchHHHhhhhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHCCC
Confidence 44578888777777777665 433333 346788887777 5999998544321 111 011124677788887755
Q ss_pred eeeE-eCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 193 HNYL-VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 193 ~~~~-v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
...+ +.+++++...++ |+. .+||+.|++..|
T Consensus 125 ~~~~~v~~~~~l~~al~-a~~-----~~~p~li~v~~~ 156 (181)
T TIGR03846 125 RNVEKVADEEELRDALK-ALA-----MKGPTFIHVKVK 156 (181)
T ss_pred CeEEEeCCHHHHHHHHH-HHc-----CCCCEEEEEEeC
Confidence 5555 888887777774 432 358999999876
No 212
>PRK08266 hypothetical protein; Provisional
Probab=92.36 E-value=2.8 Score=47.62 Aligned_cols=109 Identities=18% Similarity=0.073 Sum_probs=75.7
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+... +++.++++- --|+...+..+..|...+.|+++|.-.=.... .+... ..
T Consensus 55 A~~~A~gyar~t-g~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~---------~~~~~-~~-------- 115 (542)
T PRK08266 55 AGYMAFGYARST-GRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSAL---------IGKGR-GH-------- 115 (542)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEecCCChhh---------ccCCC-Cc--------
Confidence 455888888876 456666553 44556668999999999999988874211100 00000 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
....+|...+++.+-....++++++++.+.+++|+. ..||+.|+++.|-
T Consensus 116 ~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv 169 (542)
T PRK08266 116 LHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDV 169 (542)
T ss_pred ceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence 012258888999988889999999998888877764 4689999999874
No 213
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=92.34 E-value=1.8 Score=41.40 Aligned_cols=101 Identities=23% Similarity=0.259 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhC-CcEEEEEccchhhHH--HHHHHHHhhhCCCCEEEEeCCCcccc-cCC-----------CCCCccCH
Q 040733 119 GIFAAEGYARSSG-TPGVCLVSSGPGVTN--IMTGLMDAYSDSIPILAITGQVSQKL-LGT-----------DAFQEIPV 183 (643)
Q Consensus 119 A~~~A~Gyar~sg-~~gv~~~t~GpG~~N--~~~gl~~A~~~~vPvlvItg~~~~~~-~g~-----------~~~Q~~d~ 183 (643)
+.-+|.|.+.+.. ++.++++ |=|... .+..|..|...++|+++|.-+..... .+. ......|.
T Consensus 56 gl~~AiGa~la~p~~~Vv~i~--GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~ 133 (178)
T cd02008 56 SIGVAIGMAKASEDKKVVAVI--GDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDI 133 (178)
T ss_pred HHHHHhhHHhhCCCCCEEEEe--cChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCH
Confidence 3456777777763 5555553 444432 36889999999999999986654321 110 00123577
Q ss_pred HHHhhccceeeeEeCCcCcHH---HHHHHHHHHhhcCCCCeEEEEc
Q 040733 184 VEVTRYMTKHNYLVLDVDDIP---RIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 184 ~~~~~~~tk~~~~v~~~~~i~---~~l~~A~~~A~s~~~GPV~i~i 226 (643)
..+.+.+--..+++.+++++. +.+++|+ + .+||..|++
T Consensus 134 ~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~----~-~~gp~lI~v 174 (178)
T cd02008 134 EALVRAIGVKRVVVVDPYDLKAIREELKEAL----A-VPGVSVIIA 174 (178)
T ss_pred HHHHHHCCCCEEEecCccCHHHHHHHHHHHH----h-CCCCEEEEE
Confidence 888888866677888888887 4455554 3 358998876
No 214
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.28 E-value=2.6 Score=48.35 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=83.2
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~ 552 (643)
.-+++....- ..+.-+|-|.+.+. +++-+|++. --|+...++.+.+|...+.|+++|.-.=.... .
T Consensus 42 ~i~~i~~rhE---~~A~~mAdgYar~t-g~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~G~~~~~~---------~ 108 (574)
T PRK07979 42 GIDHVLVRHE---QAAVHMADGLARAT-GEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSL---------I 108 (574)
T ss_pred CceEEEeCcH---HHHHHHHHHHHHHh-CCceEEEECCCccHhhhHHHHHHHhhcCCCEEEEECCCChhc---------c
Confidence 3455554432 22556888888776 455555553 33556678999999999999999885422110 0
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 553 ~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
+ .. .....|...+++.+-....+|++++++...+++|+. ..||+.|+++.|-.
T Consensus 109 ~----~~--------~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 166 (574)
T PRK07979 109 G----YD--------AFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDIL 166 (574)
T ss_pred C----CC--------CCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 0 00 024478899999999999999999999998888875 46999999998754
No 215
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=92.26 E-value=1.8 Score=45.17 Aligned_cols=148 Identities=18% Similarity=0.106 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHHCCC--CEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhC-CcEEEEEccchhh--H
Q 040733 71 KGADIIVEALERQGV--TTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG-TPGVCLVSSGPGV--T 145 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV--~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg-~~gv~~~t~GpG~--~ 145 (643)
..-..+.++|.+.|+ +.+..+.|.......-...+ ...+...| .-+.-+|.|.+.+.. ++.||++ |=|. .
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl~--~~~~~g~m-G~alpaAiGaklA~pd~~VV~i~--GDG~~~~ 102 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYFL--SHGLHTLH-GRAIAFATGAKLANPDLEVIVVG--GDGDLAS 102 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhcc--cCccchhh-ccHHHHHHHHHHHCCCCcEEEEe--CccHHHh
Confidence 466788999999887 34444444333222111111 12222333 335678889888864 4455443 5443 3
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCccc-----------ccCC-------CC-CCccCHHHHhhccce-ee--eEeCCcCcH
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQK-----------LLGT-------DA-FQEIPVVEVTRYMTK-HN--YLVLDVDDI 203 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~-----------~~g~-------~~-~Q~~d~~~~~~~~tk-~~--~~v~~~~~i 203 (643)
-.+.-+..|...++||++|.-+.... ..|. +. ...+|...+.+.+-. +. ..+.+++++
T Consensus 103 mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL 182 (301)
T PRK05778 103 IGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQL 182 (301)
T ss_pred ccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHH
Confidence 45677999999999999997533211 1110 00 123566777666532 22 257778888
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 204 PRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 204 ~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
..+|++|++ .+||++|+|..
T Consensus 183 ~~ai~~A~~-----~~GpalIeV~~ 202 (301)
T PRK05778 183 VELIKKAIS-----HKGFAFIDVLS 202 (301)
T ss_pred HHHHHHHHh-----CCCCEEEEEcC
Confidence 888887774 35999999854
No 216
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=92.17 E-value=0.35 Score=48.78 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=49.5
Q ss_pred HHHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 328 YANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
....++.++|++|++|+++.-.....+... ...+++|.|+.++..... ..+..+.+++.++|.+|.+.+
T Consensus 165 ~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~--~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 165 EIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYS--QFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred HHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCc--cCCEEEECCHHHHHHHHHHHH
Confidence 344568899999999999864433333221 245689999999876554 357788899999999887654
No 217
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=92.00 E-value=1.1 Score=47.62 Aligned_cols=108 Identities=19% Similarity=0.074 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEEccchhhHHH---HHHHHHhhhCCCCEEEEeCCCcccccCCC-C--CCccCHHHHhhccc
Q 040733 118 GGIFAAEGYARSSGTPGVCLVSSGPGVTNI---MTGLMDAYSDSIPILAITGQVSQKLLGTD-A--FQEIPVVEVTRYMT 191 (643)
Q Consensus 118 ~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~---~~gl~~A~~~~vPvlvItg~~~~~~~g~~-~--~Q~~d~~~~~~~~t 191 (643)
.|+.+|.|..+.. .-.++++..|=|..+. ..++..|...++|+|+|.-+.... ++.. . ....|...+.+.+-
T Consensus 130 ~AiGaAla~k~~~-~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~-~~~~~~~~~~~~d~~~~a~a~G 207 (341)
T TIGR03181 130 HAAGVAYALKLRG-EDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWA-ISVPRSKQTAAPTLAQKAIAYG 207 (341)
T ss_pred HHHhHHHHHHhhC-CCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCc-cccchhhhhCCcCHHHHHhhCC
Confidence 4555555544433 2355666678888772 356778999999999999755321 1111 1 11245666777665
Q ss_pred eeeeEeCCcCc--HHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 192 KHNYLVLDVDD--IPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 192 k~~~~v~~~~~--i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
-..+.|...+. +.+.+.+|++.|..+. ||+.|++-.
T Consensus 208 ~~~~~Vdg~d~~av~~a~~~A~~~a~~~~-gP~lIev~t 245 (341)
T TIGR03181 208 IPGVQVDGNDVLAVYAVTKEAVERARSGG-GPTLIEAVT 245 (341)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEe
Confidence 56777766554 4678888999888764 999999854
No 218
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=91.97 E-value=0.84 Score=42.83 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCccccc----------C---CCCCCccCH
Q 040733 118 GGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLL----------G---TDAFQEIPV 183 (643)
Q Consensus 118 ~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~----------g---~~~~Q~~d~ 183 (643)
.+.-+|.|.+.+. +++.+|++-=|- +...+.++..|...++|+++|.-+...... + ....+..|.
T Consensus 50 ~~~~~a~Gaa~a~~~~~vv~~~GDG~-~~~~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 128 (168)
T cd00568 50 YGLPAAIGAALAAPDRPVVCIAGDGG-FMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDF 128 (168)
T ss_pred hhHHHHHHHHHhCCCCcEEEEEcCcH-HhccHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCH
Confidence 3445778888777 455555543332 223568899998999999999865442211 0 012234577
Q ss_pred HHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 184 VEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 184 ~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
..+.+.+--...++.+++++.+.+++|+ + ..||+.|++.
T Consensus 129 ~~~a~~~G~~~~~v~~~~~l~~a~~~a~----~-~~~p~~i~v~ 167 (168)
T cd00568 129 AALAEAYGAKGVRVEDPEDLEAALAEAL----A-AGGPALIEVK 167 (168)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHH----h-CCCCEEEEEE
Confidence 8888877555667777666666666554 3 3489999874
No 219
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=91.97 E-value=1.1 Score=52.58 Aligned_cols=95 Identities=18% Similarity=0.244 Sum_probs=61.1
Q ss_pred eEEEEecCccccCC--HHHHHH-HHHhCCC---eEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHH
Q 040733 504 IVVDIDGDGSFIMN--LQELAA-IKAENIP---VKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKF 577 (643)
Q Consensus 504 ~Vv~i~GDGsf~m~--~~eL~T-a~~~~lp---v~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~l 577 (643)
-.|++-||.+|-=- +.|-.+ +.-.+.+ .+.||+||+ +|+.- .| ...-.......+
T Consensus 649 lpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNq-iGftT-----------------~p-~~~Rss~y~td~ 709 (1228)
T PRK12270 649 LPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQ-VGFTT-----------------AP-ESSRSSEYATDV 709 (1228)
T ss_pred eEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecC-ccccc-----------------Cc-cccccchhhHHH
Confidence 35778899998542 455333 3334566 788888887 45421 01 000122345678
Q ss_pred HhHCCCCEEEe--CChhHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 040733 578 AEACGIPAARV--TKKKDVRAAIQLMLE----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 578 A~a~G~~~~~V--~~~~eL~~al~~al~----~~gp~lIeV~v~~~ 617 (643)
|++++++.+.| .+++....+.+.|++ -++++|||+.+.+.
T Consensus 710 ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRr 755 (1228)
T PRK12270 710 AKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRR 755 (1228)
T ss_pred HhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEee
Confidence 88999999988 466666666666654 58999999999754
No 220
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=91.91 E-value=2.2 Score=45.09 Aligned_cols=153 Identities=18% Similarity=0.104 Sum_probs=89.1
Q ss_pred CcHHHHHHHHHHHCCC--CEEEEccCCC-----cHHHHHHHhhC-C-CeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEc
Q 040733 70 RKGADIIVEALERQGV--TTVFAYPGGA-----SIEIHQSLTRS-N-IRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVS 139 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV--~~vFg~PG~~-----~~~l~~al~~~-~-i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t 139 (643)
++-.+++.+.|.++.- +.++.+-++- ....++.|.+. + -|++ ....|++++.+|.|.|....+|-|+...
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~~ 83 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGMN 83 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEeeh
Confidence 3455566666665543 3455554432 23445666553 4 3677 5679999999999999977777665322
Q ss_pred cc---hhhHHHHHHHHHhhh-----CCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeE-eCCcCcHHHHHHHH
Q 040733 140 SG---PGVTNIMTGLMDAYS-----DSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYL-VLDVDDIPRIIKEA 210 (643)
Q Consensus 140 ~G---pG~~N~~~gl~~A~~-----~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A 210 (643)
+- .+.=.+.+.++-... -++||++....-.....|....|.+ ..+++.+..+... ..++.++..+++.|
T Consensus 84 ~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~~--ea~~~~iPgl~V~~Psd~~d~~~~l~~a 161 (327)
T CHL00144 84 MGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRL--ESYFQSVPGLQIVACSTPYNAKGLLKSA 161 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccccH--HHHHhcCCCCEEEEeCCHHHHHHHHHHH
Confidence 11 223333343322221 3889988854322212222212443 4899998876544 55777777777776
Q ss_pred HHHhhcCCCCeEEEEcccc
Q 040733 211 FFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 211 ~~~A~s~~~GPV~i~iP~D 229 (643)
++ .+|||||--|..
T Consensus 162 ~~-----~~~Pv~ire~~~ 175 (327)
T CHL00144 162 IR-----SNNPVIFFEHVL 175 (327)
T ss_pred Hh-----CCCcEEEEEcHH
Confidence 64 249999974433
No 221
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=91.87 E-value=5.3 Score=37.97 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=80.2
Q ss_pred EEEccCCCcHHHHHHHhhC-CCeEEecCChhH---HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEE
Q 040733 88 VFAYPGGASIEIHQSLTRS-NIRSILPRHEQG---GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPIL 162 (643)
Q Consensus 88 vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~---A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvl 162 (643)
++.=-|.........+.-. +-+++.... .+ +.-+|.|.+.+. +++.+|++-=| ++.-.+..+..|...+.|++
T Consensus 20 iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG-~f~~~~~el~ta~~~~~p~~ 97 (178)
T cd02002 20 IVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDG-SFMYTIQALWTAARYGLPVT 97 (178)
T ss_pred EEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCc-hhhccHHHHHHHHHhCCCeE
Confidence 4444455555555444322 356666555 33 334788888776 45555554322 33333578888888899999
Q ss_pred EEeCCCccccc-------------------CCC-CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeE
Q 040733 163 AITGQVSQKLL-------------------GTD-AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPV 222 (643)
Q Consensus 163 vItg~~~~~~~-------------------g~~-~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV 222 (643)
+|.-+...... ..+ .....|...+.+.+--..+++.+++++.+.+++|++ ..||+
T Consensus 98 ~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~ 172 (178)
T cd02002 98 VVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELDEALREALA-----EGGPA 172 (178)
T ss_pred EEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCCHHHHHHHHHHHHh-----CCCCE
Confidence 99865542110 000 012367778888876567788887777766666654 35899
Q ss_pred EEEcc
Q 040733 223 LIDIP 227 (643)
Q Consensus 223 ~i~iP 227 (643)
.|++.
T Consensus 173 vi~v~ 177 (178)
T cd02002 173 LIEVV 177 (178)
T ss_pred EEEEE
Confidence 99873
No 222
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=91.87 E-value=0.31 Score=48.56 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=46.8
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRM 394 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L 394 (643)
+.+.++++|++|++|+++.-.....+.. ...++++|.|+.++..+. ...++.|.+|+.++|++|
T Consensus 158 ~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~--~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 158 AVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLS--PIADFAFRGKAGEVLPAL 223 (224)
T ss_pred HHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCC--CcCCEEEECCHHHHHHHh
Confidence 3456789999999999875333322221 135678999999988766 457899999999999876
No 223
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=91.83 E-value=0.55 Score=53.73 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=77.2
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++.=| |+...+..|..|.+.+.|+++|.-.-....+ + ..
T Consensus 65 A~~~A~gyar~t-g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~---------~----~~-------- 122 (571)
T PRK07710 65 AIHAAEGYARIS-GKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVI---------G----SD-------- 122 (571)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEeccCCcccc---------C----CC--------
Confidence 567888888776 56777776444 4455689999999999999998864432210 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-....+|++++++...+++|+. .+||+.|+++.|-
T Consensus 123 ~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 176 (571)
T PRK07710 123 AFQEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM 176 (571)
T ss_pred CccccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChhH
Confidence 124468888999888889999999998888887664 3599999999864
No 224
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.77 E-value=0.5 Score=54.05 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=77.5
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+..+ +++.++++ ---|....++.|.+|.+.+.|+++|.-.-..... +. .
T Consensus 64 A~~mAdgyar~t-g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~---------~~----~-------- 121 (570)
T PRK06725 64 AIHAAEGYARAS-GKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLI---------GK----D-------- 121 (570)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEecCCCcccc---------cC----C--------
Confidence 566888888776 45555554 3335555689999999999999998854332110 00 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....+|++++++.+.+++|+. .+||+.|+++.|-.
T Consensus 122 ~~q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 176 (570)
T PRK06725 122 GFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQ 176 (570)
T ss_pred CCcccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccchh
Confidence 124468889999999889999999999888888774 36999999998754
No 225
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=91.75 E-value=4.1 Score=46.86 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc---------cCCC----CC-CccCH
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL---------LGTD----AF-QEIPV 183 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~---------~g~~----~~-Q~~d~ 183 (643)
+.-+|.|.+.+. +|+.||++-=| |+.-.+..|..|...++|+++|.-+..... .+.. .+ +..|.
T Consensus 440 glp~aiGa~la~p~r~vv~i~GDG-~f~~~~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d~ 518 (588)
T PRK07525 440 AFPAIIGAKIACPDRPVVGFAGDG-AWGISMNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSY 518 (588)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcCc-hHhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCCH
Confidence 567888888876 67888887766 555557899999999999999985543221 0100 12 23688
Q ss_pred HHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 184 VEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 184 ~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..+.+.+--+.+++.+++++...+++|+.... ..||+.|++..|
T Consensus 519 ~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~--~~~p~lIev~~~ 562 (588)
T PRK07525 519 AGIAEAMGAEGVVVDTQEELGPALKRAIDAQN--EGKTTVIEIMCN 562 (588)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHhcCC--CCCcEEEEEEec
Confidence 88888887777899999998888888876431 248999999987
No 226
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=91.71 E-value=0.37 Score=49.93 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=50.7
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
+...++++|++|+||+++.-.....+-. ...+.++|.|+.++...... .++.|.+|+.++|..|.+.|.-
T Consensus 208 a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~--~~~~i~g~~~evL~~l~~~l~~ 279 (285)
T PRK05333 208 ARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPL--LTLKVEASCAQALAALVARLGL 279 (285)
T ss_pred HHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcc--eeEEEeCCHHHHHHHHHHHhCC
Confidence 4456789999999999986443222111 12355899999888776553 4889999999999999877653
No 227
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=91.63 E-value=3.6 Score=48.96 Aligned_cols=162 Identities=11% Similarity=0.012 Sum_probs=90.7
Q ss_pred CCCCcHHHHHHHHHHHCC-----CCEEEEccCCCc--H------------------------HHHHHHhhC-CCe-EEec
Q 040733 67 DKPRKGADIIVEALERQG-----VTTVFAYPGGAS--I------------------------EIHQSLTRS-NIR-SILP 113 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~G-----V~~vFg~PG~~~--~------------------------~l~~al~~~-~i~-~i~~ 113 (643)
..++..-.++.+.|.+++ .++|+++-.+-. . ..+..+.++ +=+ +-..
T Consensus 500 ~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~pgR~ie~G 579 (896)
T PRK13012 500 GKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAKDGQILEEG 579 (896)
T ss_pred CCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCCCCcEEecc
Confidence 456677778888888877 566776654432 1 111222222 223 3467
Q ss_pred CChhHHHH--HHHHHHHHh-CCc-EEEEEccch-hhHHHHHHHHHhhhCCCC-EEEEeCCCcccccCCC--CCCccCHHH
Q 040733 114 RHEQGGIF--AAEGYARSS-GTP-GVCLVSSGP-GVTNIMTGLMDAYSDSIP-ILAITGQVSQKLLGTD--AFQEIPVVE 185 (643)
Q Consensus 114 ~hE~~A~~--~A~Gyar~s-g~~-gv~~~t~Gp-G~~N~~~gl~~A~~~~vP-vlvItg~~~~~~~g~~--~~Q~~d~~~ 185 (643)
..|+++.. +|.|-+.+. |.+ -.+..|..+ |+.=+.--+-.|-..+.. +++++- ..+-..+.+ .+|.+....
T Consensus 580 IaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T-~gg~tlg~dG~THQ~~esla 658 (896)
T PRK13012 580 ITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGAT-AGRTTLGGEGLQHQDGHSHL 658 (896)
T ss_pred hhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEe-CcccccCCCCCCCcchHhHH
Confidence 89999944 555554443 332 333345554 233333333233222333 444432 222222222 478888888
Q ss_pred Hhhccce-eeeEeCCcCcHHHHHHHHHHHhh-cCCCCeEEEEcccc
Q 040733 186 VTRYMTK-HNYLVLDVDDIPRIIKEAFFIAT-SGRPGPVLIDIPVD 229 (643)
Q Consensus 186 ~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~-s~~~GPV~i~iP~D 229 (643)
+++.+.. ..++..+..++..+++.+++.+. ....+|+||.+...
T Consensus 659 l~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~ 704 (896)
T PRK13012 659 LASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNE 704 (896)
T ss_pred HHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCC
Confidence 9998764 45666777788889998887642 33468999998654
No 228
>PRK08611 pyruvate oxidase; Provisional
Probab=91.56 E-value=1.2 Score=51.04 Aligned_cols=107 Identities=17% Similarity=0.088 Sum_probs=77.1
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++- --|+.-.+..|.+|...+.|+++|.-+-....+ + ..
T Consensus 55 A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~ItG~~~~~~~---------~----~~-------- 112 (576)
T PRK08611 55 AALAAAAYAKLT-GKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLL---------G----TD-------- 112 (576)
T ss_pred HHHHHHHHHHHh-CCceEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccc---------C----CC--------
Confidence 556777777776 466666663 345555689999999999999998865443210 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~~ 617 (643)
.....|...+.+.+-....++++++++.+.+++|+ ...||+.|+++.|-.
T Consensus 113 ~~q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv~ 166 (576)
T PRK08611 113 FFQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDLP 166 (576)
T ss_pred CccccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhhh
Confidence 12446889999999888899999998888777765 456999999998743
No 229
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=91.50 E-value=0.22 Score=52.06 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=51.9
Q ss_pred cccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHHHHh-CC---CeEEEEEeCCCchhhHHHHHHhhcccccc
Q 040733 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKAE-NI---PVKILLINNQYLGMNVEYEDRYFEANRAN 558 (643)
Q Consensus 484 g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta~~~-~l---pv~ivV~NN~~~g~~~~~q~~~~~~~~~~ 558 (643)
|-+||+++-|.||++-+|+..|+||+|||.+--. +..=|.+.++ +- -.++=|+.=|||-|-.. ....
T Consensus 140 GELGYaLshA~GA~~DnPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG~KI~~p--------Til~ 211 (379)
T PF09364_consen 140 GELGYALSHAFGAVFDNPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGYKISNP--------TILA 211 (379)
T ss_dssp SSTS-HHHHHHHHHTT-TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSSB---------HHH
T ss_pred cchhhHHHHHhhcccCCCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecCccccCC--------eEee
Confidence 6799999999999999999999999999997654 2222322222 10 12222333335554210 0000
Q ss_pred cccCCCCCCCCCCCCHHHHHhHCCCCEEEeCC
Q 040733 559 SFLGDPLRKSEIFPDMLKFAEACGIPAARVTK 590 (643)
Q Consensus 559 ~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~ 590 (643)
+ ...-++.++.+++|.+-+.|+.
T Consensus 212 r---------~~~~eL~~lf~G~Gy~p~~Veg 234 (379)
T PF09364_consen 212 R---------MSDEELEALFRGYGYEPIFVEG 234 (379)
T ss_dssp H---------S-HHHHHHHHHHTTEEEEEEE-
T ss_pred e---------cCHHHHHHHHHhCCCeEEEEec
Confidence 0 1223688899999998888765
No 230
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=91.50 E-value=0.71 Score=53.32 Aligned_cols=106 Identities=19% Similarity=0.142 Sum_probs=76.6
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++- --|+...+..|.+|...++|+++|.-.-....+ + ..
T Consensus 81 A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~~---------~----~~-------- 138 (612)
T PRK07789 81 AGHAAEGYAQAT-GRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLI---------G----TD-------- 138 (612)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcccc---------C----CC--------
Confidence 566788888776 456565554 445555689999999999999998864332110 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-....+|++++++.+.+++|+. ..||+.|++..|-
T Consensus 139 ~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 192 (612)
T PRK07789 139 AFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA 192 (612)
T ss_pred cCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence 124468889999988888999999998888887764 3589999999874
No 231
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=91.49 E-value=1.2 Score=51.31 Aligned_cols=108 Identities=21% Similarity=0.193 Sum_probs=77.5
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+..+++.||++ .=.|+...++.|.+|...+.|+++|.-.-.... .+ ..
T Consensus 53 A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~---------~~----~~-------- 111 (588)
T TIGR01504 53 ASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRAR---------LH----KE-------- 111 (588)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccc---------cC----CC--------
Confidence 455677777665345666554 344566678999999999999999885433211 00 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+.+.+-....+|++++++.+.|++|+. .+||+.|+|+.|-.
T Consensus 112 ~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (588)
T TIGR01504 112 DFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQ 166 (588)
T ss_pred cccccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchh
Confidence 124468889999999899999999999888888774 45899999998754
No 232
>PRK07586 hypothetical protein; Validated
Probab=91.38 E-value=3.1 Score=46.94 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=75.5
Q ss_pred chHHHHHHHHhCCCCeEEEE-ecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDI-DGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i-~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++.||+ +---|+...+..|.+|...+.|+++|.-+-..... ...
T Consensus 51 A~~mAdgyar~t-g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G~~~~~~~--------------~~~------- 108 (514)
T PRK07586 51 ATGAADGYARMA-GKPAATLLHLGPGLANGLANLHNARRARTPIVNIVGDHATYHR--------------KYD------- 108 (514)
T ss_pred HHHHHHHHHHHH-CCCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEecCCchhcc--------------CCC-------
Confidence 556777777766 4666554 43445666688899999999999988854321100 000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....+|++++++.+.+++|+. ..||+.|+++.|-.
T Consensus 109 ~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~ 163 (514)
T PRK07586 109 APLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVA 163 (514)
T ss_pred cccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchh
Confidence 023468889999988889999999988887777663 36899999998854
No 233
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.30 E-value=2.4 Score=48.54 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=82.0
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-. .+.-+|-|.+..+ +++.++++-=| |+...++.|.+|...+.|+++|.-.-....
T Consensus 43 i~~i~~rhE~---~A~~mAdgyar~t-g~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~----------- 107 (574)
T PRK06466 43 VEHILVRHEQ---AATHMADGYARAT-GKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTL----------- 107 (574)
T ss_pred ceEEEeCcHH---HHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccc-----------
Confidence 4555543322 2455778887776 56666666444 555568999999999999999885433210
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.+.. .....|...+++.+-....+|++++++...+++|+. .+||+.|+++.|-
T Consensus 108 -------~~~~---~~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 108 -------IGED---AFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred -------cCCC---cccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 0000 124468889999988899999999999888888774 2689999999884
No 234
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=91.26 E-value=1 Score=51.16 Aligned_cols=108 Identities=17% Similarity=0.093 Sum_probs=78.3
Q ss_pred chHHHHHHHHhCCCCeEEE-EecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVD-IDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~-i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++-|| .+.-=|+...+..|.+|..-+.|+++|.-.=.. . ..+..
T Consensus 51 Aa~mAdgyar~T-GkpgV~~~tsGPGatN~~tgla~A~~d~~Pll~itGqv~~-~-------------~~g~~------- 108 (550)
T COG0028 51 AAFAADGYARAT-GKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPT-S-------------LIGTD------- 108 (550)
T ss_pred HHHHHHHHHHHc-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCccc-c-------------ccCcc-------
Confidence 567788887776 455444 444446677789999999999999888751110 0 00110
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQE 618 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~~ 618 (643)
.....|...+.+.+-...++|.+++++.+.+++|+. .+||++|+++.|-..
T Consensus 109 afQe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~~ 164 (550)
T COG0028 109 AFQEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLA 164 (550)
T ss_pred hhhhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHhh
Confidence 135579999999999999999999999999988874 458999999876543
No 235
>PRK11269 glyoxylate carboligase; Provisional
Probab=91.24 E-value=1.3 Score=51.00 Aligned_cols=107 Identities=21% Similarity=0.191 Sum_probs=77.0
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccC-CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIM-NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m-~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+....+++.+|++-=|--.. .+..+.+|.+.+.|+++|.-+-..... . ..
T Consensus 54 A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~---------~----~~-------- 112 (591)
T PRK11269 54 ASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARL---------H----KE-------- 112 (591)
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCcccc---------C----CC--------
Confidence 5667888777663467777775554333 478999999999999988864332110 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-....+|++++++...+++|+. .+||+.|+++.|-
T Consensus 113 ~~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 113 DFQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred cccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence 023468889999988889999999998888887764 3589999999874
No 236
>PRK08322 acetolactate synthase; Reviewed
Probab=91.14 E-value=1.2 Score=50.80 Aligned_cols=106 Identities=9% Similarity=0.050 Sum_probs=76.4
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++- .-|+...+..+.+|...++|+++|.-+=....+ . ..
T Consensus 50 A~~~A~gyar~t-g~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~-----------~--~~-------- 107 (547)
T PRK08322 50 AAFMAATYGRLT-GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRS-----------K--QG-------- 107 (547)
T ss_pred HHHHHHHHHHhh-CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEecccccccc-----------C--CC--------
Confidence 566788887776 456666554 456666789999999999999988853221100 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+.+.+-....+|++++++.+.+++|+. ..||+.|+++.|-
T Consensus 108 ~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (547)
T PRK08322 108 SFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDI 161 (547)
T ss_pred ccccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 023468888898888888999999998888887764 3589999999874
No 237
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=91.04 E-value=3.8 Score=42.15 Aligned_cols=146 Identities=13% Similarity=0.110 Sum_probs=85.5
Q ss_pred HHHHHHHHHHCCC---CEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhC-CcEEEEEccchhhHH--
Q 040733 73 ADIIVEALERQGV---TTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG-TPGVCLVSSGPGVTN-- 146 (643)
Q Consensus 73 a~~lv~~L~~~GV---~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg-~~gv~~~t~GpG~~N-- 146 (643)
-..+++.|.+.++ +.++....+...-+.. ..+ .+.+...| .-|.-+|.|.+.+.. ++.||++ |=|..-
T Consensus 28 ~~~v~~al~e~~~~~~d~ivvsdiGc~~~~~~-~~~--~~~~~~~~-G~alPaAiGaklA~Pdr~VV~i~--GDG~f~~~ 101 (277)
T PRK09628 28 LKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSS-YVN--CNTVHTTH-GRAVAYATGIKLANPDKHVIVVS--GDGDGLAI 101 (277)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCcCHHHHhhc-cCC--CCceeecc-ccHHHHHHHHHHHCCCCeEEEEE--CchHHHHh
Confidence 4568899988863 3454444444322222 112 33343344 367789999999874 5555543 554432
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCccccc-----------CC-------CC-CCccCHHHHhhccce-e--eeEeCCcCcHH
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLL-----------GT-------DA-FQEIPVVEVTRYMTK-H--NYLVLDVDDIP 204 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~-----------g~-------~~-~Q~~d~~~~~~~~tk-~--~~~v~~~~~i~ 204 (643)
...-+..|...++||++|.-+....-. +. +. ...+|...+.+.+-- + ..++.+++++.
T Consensus 102 g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~ 181 (277)
T PRK09628 102 GGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLE 181 (277)
T ss_pred hHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHH
Confidence 334556689999999999743321110 00 00 012466777666532 2 24788888888
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 205 RIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 205 ~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..|++|++ .+||++|++..+
T Consensus 182 ~al~~Al~-----~~Gp~lIeV~~~ 201 (277)
T PRK09628 182 KLLVKGFS-----HKGFSFFDVFSN 201 (277)
T ss_pred HHHHHHHh-----CCCCEEEEEcCC
Confidence 88888775 359999998653
No 238
>PRK08617 acetolactate synthase; Reviewed
Probab=91.04 E-value=0.88 Score=51.86 Aligned_cols=106 Identities=13% Similarity=0.042 Sum_probs=75.7
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.+|++-=| |+...+..+.+|...+.|+++|.-.-....+ . ..
T Consensus 54 A~~~A~gyar~t-g~~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG~~~~~~~---------~----~~-------- 111 (552)
T PRK08617 54 AAFMAAAIGRLT-GKPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADR---------L----KR-------- 111 (552)
T ss_pred HHHHHHhHhhhc-CCCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEecCCccccc---------C----CC--------
Confidence 455677777666 56777776544 4444688999999999999988853321110 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|-..+++.+-....++++++++...+++|+. ..||+.||++.|-
T Consensus 112 ~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 112 THQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred CccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhh
Confidence 024467788999988889999999998888887764 3589999999774
No 239
>PRK07064 hypothetical protein; Provisional
Probab=91.04 E-value=1.7 Score=49.51 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=74.4
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++- --|+.-.++.|.+|...+.|+++|.-+=.... .+.+. ..+
T Consensus 53 A~~~A~gyar~t-g~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~g~~~~~~---------~~~~~--~~~------ 114 (544)
T PRK07064 53 AVNMADAHARVS-GGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPY---------LDQDL--GYI------ 114 (544)
T ss_pred HHHHHHHHHHhc-CCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCccc---------ccCCC--ccc------
Confidence 556778887776 455555543 33555568999999999999999886422100 00000 000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
...+|...+++.+-....++++++++...+++|+. .+||+.|+++.|-
T Consensus 115 -~~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (544)
T PRK07064 115 -HEAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI 167 (544)
T ss_pred -ccccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence 12358889999888889999999988877777663 3699999999764
No 240
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.87 E-value=2.5 Score=48.66 Aligned_cols=107 Identities=18% Similarity=0.142 Sum_probs=77.2
Q ss_pred chHHHHHHHHhCCCCeEEEE-ecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDI-DGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i-~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++-+++ +-.-|+...++.|.+|...+.|+++|.-.-.... .+. .
T Consensus 61 A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~G~~~~~~---------~~~----~-------- 118 (595)
T PRK09107 61 AGHAAEGYARST-GKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHL---------IGS----D-------- 118 (595)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEEcCCChhh---------cCC----C--------
Confidence 556677877766 4555544 4455666678999999999999998885433210 000 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....+|++++++.+.+++|+. ..||+.|+|+.|-.
T Consensus 119 ~~q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 173 (595)
T PRK09107 119 AFQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDVQ 173 (595)
T ss_pred CCcccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCChh
Confidence 124468889999988888999999999888888775 36899999998754
No 241
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=90.77 E-value=1.7 Score=50.76 Aligned_cols=116 Identities=16% Similarity=0.082 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHh------CCCcEEEEcCCch-hhHHHHHHHHHH-hCCceeecCCCCCCCC--CCCCCcccccCCCCc
Q 040733 257 DELALRQTLKLIVE------SKNPVLCVGGGCL-NSSEELRKFVGL-TGIPVTCTTMGLGLFP--CTDELCLRMVGMFGT 326 (643)
Q Consensus 257 ~~~~i~~~~~~L~~------AkrPvIl~G~g~~-~~~~~l~~lae~-lg~PV~tt~~gkg~~~--~~hpl~lG~~g~~~~ 326 (643)
-+++++.+++.|++ .++..++.|.+.. .....+.+|++. +|.+-+.+.......+ ..+....|.. ..+.
T Consensus 70 WdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~ 148 (671)
T TIGR01591 70 WDEAISYIAEKLKEIKEKYGPDSIGFIGSSRGTNEENYLLQKLARAVIGTNNVDNCARVCHGPSVAGLKQTVGIG-AMSN 148 (671)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCcccHHHHHHHHHHHHhcCCccccCCCCceehhhhHHHHHhhCCC-CCCC
Confidence 46778888888873 3456667766544 344567889986 8887554321100000 0011112211 1111
Q ss_pred HHHHHhhhcCCEEEEecCccCcccc---Cccc-cccCCceEEEEcCCcccccC
Q 040733 327 VYANYAVNECDLLLAAGVRFNERMT---SKLE-DFATRAKIVHIDIDSNEIGK 375 (643)
Q Consensus 327 ~~~~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~~~~iI~Id~d~~~i~~ 375 (643)
. .+-++++|+||++|+....... ..+. .....+|+|.||+.......
T Consensus 149 ~--~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~ 199 (671)
T TIGR01591 149 T--ISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAK 199 (671)
T ss_pred C--HHHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhH
Confidence 1 1347889999999998643211 1111 12246799999987776544
No 242
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=90.75 E-value=1.1 Score=51.09 Aligned_cols=107 Identities=23% Similarity=0.238 Sum_probs=76.4
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.|+++-=| |+...+..+.+|.+.+.|+++|.-.-..... + ..
T Consensus 50 A~~~Adgyar~s-g~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~---------~----~~-------- 107 (548)
T PRK08978 50 AAMAAIGYARAT-GKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLI---------G----TD-------- 107 (548)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCcccc---------C----CC--------
Confidence 566788888776 56777776555 4444689999999999999988853322110 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....+|++++++...+++|+. ..||+.||++.|-.
T Consensus 108 ~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 162 (548)
T PRK08978 108 AFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDIQ 162 (548)
T ss_pred CCcccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhhh
Confidence 023457778888887788999999988888877764 35899999998753
No 243
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=90.74 E-value=1.6 Score=47.23 Aligned_cols=113 Identities=19% Similarity=0.162 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHhCC--CcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhh
Q 040733 257 DELALRQTLKLIVESK--NPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAV 333 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak--rPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l 333 (643)
-+++++.+++.|++.+ +..++.|.... +....+.+|++.+|.+.+............... .|. +..+.. ..-+
T Consensus 71 WdeAl~~ia~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~--~~di 146 (386)
T cd02768 71 WEEALKTVAEGLKAVKGDKIGGIAGPRADLESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRL-RGN-YLFNTS--IAEI 146 (386)
T ss_pred HHHHHHHHHHHHHhcChhheEEEecCCCCHHHHHHHHHHHHHhCCCCchhhhccccCcccccc-ccC-cccCCC--HHHH
Confidence 5788999999999887 56666666443 444568899999998765331110000000000 011 111111 2346
Q ss_pred hcCCEEEEecCccCcccc---Cccc-cccC-CceEEEEcCCcccc
Q 040733 334 NECDLLLAAGVRFNERMT---SKLE-DFAT-RAKIVHIDIDSNEI 373 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~t---~~~~-~~~~-~~~iI~Id~d~~~i 373 (643)
+++|+||++|..+.+... ..+. .... .+++|.||+...+.
T Consensus 147 ~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~ 191 (386)
T cd02768 147 EEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL 191 (386)
T ss_pred hhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc
Confidence 799999999988643211 1111 1122 67999999877665
No 244
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=90.73 E-value=1.5 Score=50.33 Aligned_cols=154 Identities=13% Similarity=0.106 Sum_probs=91.5
Q ss_pred CcHHHHHHHHHHHCC--CCEEEEccCC-C-cHHHHHHHhhC-CCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchh
Q 040733 70 RKGADIIVEALERQG--VTTVFAYPGG-A-SIEIHQSLTRS-NIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPG 143 (643)
Q Consensus 70 ~~~a~~lv~~L~~~G--V~~vFg~PG~-~-~~~l~~al~~~-~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG 143 (643)
++..+++.++|.+.. -..++++-++ . ...+ ..|.+. +=|++ ...-|++.+.+|.|.|...-+|-+ .|..+=
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~-~~f~~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~--~~f~~F 355 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGL-VKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKPVV--AIYSTF 355 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCH-HHHHHHhhhhccCCChHHHHHHHHHHHHHHCCCeeEE--EeeHHH
Confidence 456677777776653 2345543222 1 1112 223221 22333 567899999999999984433333 334443
Q ss_pred hHHHHHHHHH-hhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceee-eEeCCcCcHHHHHHHHHHHhhcCCCCe
Q 040733 144 VTNIMTGLMD-AYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHN-YLVLDVDDIPRIIKEAFFIATSGRPGP 221 (643)
Q Consensus 144 ~~N~~~gl~~-A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GP 221 (643)
+.-++.-+.. +...+.||+++..........-..+|.+.+..+++.+..+. +...++.++..+++.|+. ..+||
T Consensus 356 ~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~----~~~~P 431 (580)
T PRK05444 356 LQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALA----YDDGP 431 (580)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----CCCCc
Confidence 3344554433 56789999999643332111122478888889999987654 345666677666666654 23599
Q ss_pred EEEEcccch
Q 040733 222 VLIDIPVDV 230 (643)
Q Consensus 222 V~i~iP~Dv 230 (643)
|||.++...
T Consensus 432 ~~ir~~r~~ 440 (580)
T PRK05444 432 IAIRYPRGN 440 (580)
T ss_pred EEEEecCCC
Confidence 999999764
No 245
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=90.72 E-value=0.6 Score=47.90 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=49.2
Q ss_pred HHHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 328 YANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
.+.+.++++|++|++|+++.-.....+... ...+++|.|+.++..++. ...++.|.+++.+++. +.+.|..
T Consensus 192 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~-~~~d~~i~~~~~~~~~-~~~~~~~ 264 (271)
T PTZ00409 192 QAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITN-RISDYHVRAKFSELAQ-ISDILKG 264 (271)
T ss_pred HHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCC-ccccEEEECcHHHHHH-HHHHhcc
Confidence 445678899999999999864433333222 245789999998876542 2468999999999885 4445443
No 246
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.71 E-value=0.88 Score=52.14 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=75.5
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.++++ .--|+...++.+.+|...+.|+++|.-.-..... + ..
T Consensus 54 A~~mAdgyar~t-g~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~G~~~~~~~---------~----~~-------- 111 (574)
T PRK06882 54 AVHMADGYARST-GKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLI---------G----TD-------- 111 (574)
T ss_pred HHHHHHHHHHhh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcccc---------C----CC--------
Confidence 456777777766 45655554 3445666689999999999999888753321100 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-....+|++++++...+++|+. ..||+.|+|+.|-
T Consensus 112 ~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06882 112 AFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM 165 (574)
T ss_pred cccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHH
Confidence 123468889999988889999999988877777764 4699999999873
No 247
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=90.67 E-value=1.2 Score=51.19 Aligned_cols=106 Identities=20% Similarity=0.159 Sum_probs=76.7
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.++++- --|+...++.+.+|...+.|+++|.-.-.... .+. .
T Consensus 50 A~~~Adgyar~t-g~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~------------------~~~---~ 107 (586)
T PRK06276 50 AAHAADGYARAS-GKVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKL------------------IGN---D 107 (586)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCccc------------------cCC---C
Confidence 667888888776 456666554 44666678999999999999998874222100 000 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-...+++++++++...+++|+. ..||+.|+|+.|-
T Consensus 108 ~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 161 (586)
T PRK06276 108 AFQEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDV 161 (586)
T ss_pred CCccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhH
Confidence 123468889999999899999999998888888775 3689999999763
No 248
>PRK05858 hypothetical protein; Provisional
Probab=90.67 E-value=1.4 Score=50.08 Aligned_cols=107 Identities=18% Similarity=0.091 Sum_probs=75.9
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.++++ .--|+...++.|.+|...+.|+++|.-+-.. . .... +
T Consensus 54 A~~~AdGyar~t-g~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~g~~~~-~-------------~~~~--~----- 111 (542)
T PRK05858 54 AAFAAEAWAKLT-RVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPA-L-------------RWGM--G----- 111 (542)
T ss_pred HHHHHHHHHHhc-CCCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEeCCCCc-c-------------cCCC--C-----
Confidence 567888888876 45666554 4456666789999999999998877632211 0 0000 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....++++++++.+.+++|+. ..||+.|+++.|-.
T Consensus 112 ~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 166 (542)
T PRK05858 112 SLQEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHA 166 (542)
T ss_pred CCcccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhhh
Confidence 023467788899988899999999998888887763 36899999997753
No 249
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.65 E-value=1.2 Score=51.03 Aligned_cols=106 Identities=19% Similarity=0.168 Sum_probs=76.1
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++-|+++- --|++..++.+.+|...+.|+++|.-.-.... .+ ..
T Consensus 54 A~~mAdgyar~t-g~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~G~~~~~~---------~~----~~-------- 111 (572)
T PRK08979 54 AVHMADGYARAT-GKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNL---------IG----ND-------- 111 (572)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEecCCCccc---------cC----CC--------
Confidence 566778887776 456555553 33566678999999999999988885322110 00 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-....+|++++++.+.+++|+. ..||+.|+++.|-
T Consensus 112 ~~q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 112 AFQECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred CCcccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 124468889999988889999999999888888774 4589999999874
No 250
>PLN02470 acetolactate synthase
Probab=90.62 E-value=0.76 Score=52.78 Aligned_cols=117 Identities=17% Similarity=0.105 Sum_probs=81.1
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-. .+.-+|-|.+.+. +++.+|++-=| |....++.+.+|...+.|+++|.-.-....+ +
T Consensus 52 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~---------~ 118 (585)
T PLN02470 52 IRNVLCRHEQ---GEVFAAEGYAKAS-GKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMI---------G 118 (585)
T ss_pred ceEEEeccHH---HHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEecCCChhhc---------C
Confidence 4555543322 2566788887776 46666665444 4444589999999999999998754332110 0
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.. .....|...+++.+-...++|++++++.+.+++|+. .+||+.||++.|-
T Consensus 119 ----~~--------~~q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 174 (585)
T PLN02470 119 ----TD--------AFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDI 174 (585)
T ss_pred ----CC--------cCcccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCch
Confidence 00 124467888999988889999999999888888764 3699999999874
No 251
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=90.62 E-value=0.97 Score=47.03 Aligned_cols=107 Identities=23% Similarity=0.169 Sum_probs=69.2
Q ss_pred HHHHHHHHHh---CCcEEEEEccchhhHHH---HHHHHHhhhCCCCEEEEeCCCcccccCCC---CCCccCHHHHhhccc
Q 040733 121 FAAEGYARSS---GTPGVCLVSSGPGVTNI---MTGLMDAYSDSIPILAITGQVSQKLLGTD---AFQEIPVVEVTRYMT 191 (643)
Q Consensus 121 ~~A~Gyar~s---g~~gv~~~t~GpG~~N~---~~gl~~A~~~~vPvlvItg~~~~~~~g~~---~~Q~~d~~~~~~~~t 191 (643)
-+|.|.+.+. +.-.++++..|=|.++. .-++..|...++|+|+|.-+.... +... .....|...+.+.+-
T Consensus 111 p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~-i~~~~~~~~~~~~~~~~a~a~G 189 (293)
T cd02000 111 PLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYA-ISTPTSRQTAGTSIADRAAAYG 189 (293)
T ss_pred hHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCee-ccCCHHHHhCCccHHHHHHhCC
Confidence 3445554443 33356666678877764 367888999999999998754321 1111 011235566666665
Q ss_pred eeeeEeC--CcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 192 KHNYLVL--DVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 192 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
-....|. +++++...+++|++.+..+. ||+.|++-.+
T Consensus 190 ~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~-~P~lIev~~~ 228 (293)
T cd02000 190 IPGIRVDGNDVLAVYEAAKEAVERARAGG-GPTLIEAVTY 228 (293)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHccC-CCEEEEEEEe
Confidence 5566675 34578888999998888764 8999998654
No 252
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=90.57 E-value=0.98 Score=52.23 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=76.1
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++.|+++- --|+...++.|.+|...+.|+++|.-+-....+ + ..
T Consensus 72 Aa~aA~gyar~t-gk~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~---------~----~~-------- 129 (616)
T PRK07418 72 AAHAADGYARAT-GKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAI---------G----TD-------- 129 (616)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCcccc---------C----CC--------
Confidence 566777777666 466666654 446666799999999999999999864221110 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....+|++++++...+++|+. ..||+.|+++.|-.
T Consensus 130 ~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 184 (616)
T PRK07418 130 AFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDVG 184 (616)
T ss_pred CcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhhh
Confidence 023467788888888788899999998888887764 35999999997643
No 253
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=90.56 E-value=1.5 Score=50.75 Aligned_cols=148 Identities=15% Similarity=0.188 Sum_probs=93.3
Q ss_pred cHHHHHHHHHHHCC--CCEEEEc----cCCCcHHHHHHHhh-CCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 040733 71 KGADIIVEALERQG--VTTVFAY----PGGASIEIHQSLTR-SNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGP 142 (643)
Q Consensus 71 ~~a~~lv~~L~~~G--V~~vFg~----PG~~~~~l~~al~~-~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~Gp 142 (643)
+..+++.+.|.+.. -..|+++ +|+... +.|.+ .+=|++ ...-|++++.+|.|.|...-+|-|. |..+
T Consensus 320 ~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~---~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~--~f~~ 394 (641)
T PRK12571 320 SYTSVFGEELTKEAAEDSDIVAITAAMPLGTGL---DKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCA--VYST 394 (641)
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCh---HHHHHhCCCcccccCccHHHHHHHHHHHHHCCCEEEEE--ehHH
Confidence 55667777776554 2345555 333221 33433 222444 5678999999999999843344443 3555
Q ss_pred hhHHHHHHH-HHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCC
Q 040733 143 GVTNIMTGL-MDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGR 218 (643)
Q Consensus 143 G~~N~~~gl-~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~ 218 (643)
=..-++..| .++...+.||+++.-.... .|. ..+|.+.+..+++.+.-+.. ...++.++..+++.|++. .
T Consensus 395 Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~--~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~ 468 (641)
T PRK12571 395 FLQRGYDQLLHDVALQNLPVRFVLDRAGL--VGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAH----D 468 (641)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEECCCc--CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC----C
Confidence 445677776 4477899999988621111 132 24788888899999875443 455666777777666542 3
Q ss_pred CCeEEEEcccc
Q 040733 219 PGPVLIDIPVD 229 (643)
Q Consensus 219 ~GPV~i~iP~D 229 (643)
.|||+|.+|..
T Consensus 469 ~~P~~ir~~r~ 479 (641)
T PRK12571 469 DGPIAVRFPRG 479 (641)
T ss_pred CCcEEEEEecC
Confidence 59999999975
No 254
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=90.55 E-value=1.7 Score=50.21 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=91.6
Q ss_pred CcHHHHHHHHHHHCCC--CEEEEc----cCC-CcHHHHHHHhhCCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccc
Q 040733 70 RKGADIIVEALERQGV--TTVFAY----PGG-ASIEIHQSLTRSNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSG 141 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV--~~vFg~----PG~-~~~~l~~al~~~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~G 141 (643)
.+..+++.++|.+..- +.|+.+ +++ ....|.+.+ +=|++ ...-|++++.+|.|.|...-+|-|+ +..
T Consensus 310 ~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~f---P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~--~~a 384 (617)
T TIGR00204 310 PSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKF---PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVA--IYS 384 (617)
T ss_pred ccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHC---ccccccCCccHHHHHHHHHHHHHCCCEEEEE--ecH
Confidence 3456677777666543 345553 322 222333332 22444 5678999999999999854444433 355
Q ss_pred hhhHHHHHHH-HHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceee-eEeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 142 PGVTNIMTGL-MDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHN-YLVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 142 pG~~N~~~gl-~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
+=+.-++.-| .++...+.||+++..........-..+|.+....+++.+.-.. +...++.++..+++.|++ ..+
T Consensus 385 ~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~----~~~ 460 (617)
T TIGR00204 385 TFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYH----YDD 460 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHh----CCC
Confidence 4444444444 3456678999988543322111122477777788999887644 345677777777777664 235
Q ss_pred CeEEEEcccc
Q 040733 220 GPVLIDIPVD 229 (643)
Q Consensus 220 GPV~i~iP~D 229 (643)
|||+|..|..
T Consensus 461 ~Pv~ir~~r~ 470 (617)
T TIGR00204 461 GPIAVRYPRG 470 (617)
T ss_pred CCEEEEEccC
Confidence 8999999975
No 255
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=90.53 E-value=0.76 Score=52.40 Aligned_cols=109 Identities=19% Similarity=0.152 Sum_probs=77.2
Q ss_pred chHHHHHHHHhCCCCeEEEE-ecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDI-DGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i-~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.++ +++-||+ +.--|++..++.+.+|...+.|+++|.-.-..... ... ..
T Consensus 52 A~~mAdgyar~t-g~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~G~~~~~~~-------~~~----~~-------- 111 (554)
T TIGR03254 52 AGYAAAAAGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIV-------DLQ----QG-------- 111 (554)
T ss_pred HHHHHHHHHHHh-CCCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEEccCCcccc-------ccC----CC--------
Confidence 556777777776 4555554 44556777799999999999999999865432100 000 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-...++|++++++.+.+++|+. .+||+.|+++.|-.
T Consensus 112 ~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv~ 166 (554)
T TIGR03254 112 DYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVL 166 (554)
T ss_pred CcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHHh
Confidence 023468889999999999999999998888777763 45889999997743
No 256
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=90.48 E-value=3.6 Score=42.36 Aligned_cols=146 Identities=18% Similarity=0.100 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHCCC---CEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHH
Q 040733 72 GADIIVEALERQGV---TTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 72 ~a~~lv~~L~~~GV---~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~ 147 (643)
.-.+|-+.|.+.|+ +.++...-+.+. ..-...+ .......| ..|.-+|.|...+. .++.|+++-=|-++.-.
T Consensus 18 il~al~~al~~l~~~~~~~ivvsdiGc~~-~~~~~~~--~~~~~~~~-G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ig 93 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVVSGIGCSS-NLPEFLN--TYGIHGIH-GRVLPIATGVKWANPKLTVIGYGGDGDGYGIG 93 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCchhh-hhhhhcc--CCCccccc-ccHHHHHHHHHHHCCCCcEEEEECChHHHHcc
Confidence 44677888888875 345554444443 2211111 33445666 66678899999887 45655555444457788
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccc-----------cCCC----CC----CccCHHHHhhccce-eeeEe--CCcCcHHH
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKL-----------LGTD----AF----QEIPVVEVTRYMTK-HNYLV--LDVDDIPR 205 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~-----------~g~~----~~----Q~~d~~~~~~~~tk-~~~~v--~~~~~i~~ 205 (643)
++.|..|...++|+++|.-+..... .|.. .+ ...|...+.+.+-- +..+. .+++++.+
T Consensus 94 ~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~ 173 (279)
T PRK11866 94 LGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKE 173 (279)
T ss_pred HHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHH
Confidence 8999999999999999874332110 0000 00 01366677665422 22222 45566666
Q ss_pred HHHHHHHHhhcCCCCeEEEEc
Q 040733 206 IIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 206 ~l~~A~~~A~s~~~GPV~i~i 226 (643)
.|++|+ . .+||.+|++
T Consensus 174 ~l~~Al----~-~~Gps~I~v 189 (279)
T PRK11866 174 IIKEAI----K-HKGFSFIDV 189 (279)
T ss_pred HHHHHH----h-CCCCEEEEE
Confidence 666655 3 359999987
No 257
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=90.37 E-value=1.5 Score=50.20 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=75.4
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.|+++-=|-...| +..|.+|.+.++|+++|.-.=.... .+ ..
T Consensus 61 A~~~Adgyar~t-g~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~---------~~----~~-------- 118 (578)
T PRK06112 61 GGAMADGYARVS-GKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQ---------TD----RN-------- 118 (578)
T ss_pred HHHHHHHHHHHh-CCCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccc---------CC----CC--------
Confidence 556777888776 5777777754443333 7889999999999999884322110 00 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|-..+.+.+-....++++++++...+++|+. ..||+.|+++.|-
T Consensus 119 ~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv 172 (578)
T PRK06112 119 AFQELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADL 172 (578)
T ss_pred CccccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhH
Confidence 023468888999999889999999888877777663 3589999999873
No 258
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=90.33 E-value=1.1 Score=51.24 Aligned_cols=119 Identities=15% Similarity=0.087 Sum_probs=79.3
Q ss_pred CeEEecC---ChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHHH---HHHHHhhhCCCCEEEEeCCCccccc-------
Q 040733 108 IRSILPR---HEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIM---TGLMDAYSDSIPILAITGQVSQKLL------- 173 (643)
Q Consensus 108 i~~i~~~---hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~---~gl~~A~~~~vPvlvItg~~~~~~~------- 173 (643)
-+++... .=..+.-+|.|++.+. +++.||++ |=|..+.- ..+..|...+.|+++|.-+......
T Consensus 421 ~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~--GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~ 498 (569)
T PRK08327 421 GSYFGDGSAGGLGWALGAALGAKLATPDRLVIATV--GDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLE 498 (569)
T ss_pred CCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEe--cCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhh
Confidence 4455433 2333456778877765 57766664 44444332 3577888899999999876542110
Q ss_pred --CC------C-----CC-CccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 174 --GT------D-----AF-QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 174 --g~------~-----~~-Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+. + .+ ...|...+.+.+--+.+++.+++++...+++|+....++ .||+.|++..|
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~~~-~gp~liev~v~ 567 (569)
T PRK08327 499 VYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVEDPEELKGALRRALAAVRKG-RRSAVLDVIVD 567 (569)
T ss_pred hCcccccccccccccccCCCCCCHHHHHHhCCCCceEeCCHHHHHHHHHHHHHHHhcC-CCcEEEEEEcc
Confidence 00 0 11 335777888887778889999999999999998776554 48999999865
No 259
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=90.28 E-value=1.5 Score=50.28 Aligned_cols=107 Identities=17% Similarity=0.064 Sum_probs=77.1
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++.||++- --|+.-.++.+.+|...+.|+++|.-.-..... + ..
T Consensus 55 A~~~Adgyar~t-g~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~---------~----~~-------- 112 (572)
T PRK06456 55 AAHAADGYARAS-GVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVM---------G----KM-------- 112 (572)
T ss_pred HHHHHHHHHHhh-CCCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEecCCCcccc---------C----CC--------
Confidence 566778877776 567777643 345555689999999999999998753321100 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....++++++++.+.+++|+. ..||+.|+++.|-.
T Consensus 113 ~~q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 167 (572)
T PRK06456 113 AFQEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIF 167 (572)
T ss_pred CccccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhHh
Confidence 023468888999998899999999998888888764 46999999997753
No 260
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=90.28 E-value=1.6 Score=49.79 Aligned_cols=106 Identities=10% Similarity=0.007 Sum_probs=76.0
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.+|++-=| |+...+..|.+|...+.|+++|.-.=.... .+ ..
T Consensus 58 A~~~Adgyar~t-g~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~---------~~----~~-------- 115 (557)
T PRK08199 58 AAMMAEAYGKLT-GRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDF---------RE----RE-------- 115 (557)
T ss_pred HHHHHHHHHHhc-CCCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEecCCcccc---------CC----CC--------
Confidence 567788888776 56777776544 445568999999999999988874321100 00 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+=...++|++++++...+++|+. .+||+.|+++.|-
T Consensus 116 ~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl 169 (557)
T PRK08199 116 AFQEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDV 169 (557)
T ss_pred cccccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 023468888888888888999999998888877764 3589999999764
No 261
>PRK12474 hypothetical protein; Provisional
Probab=90.27 E-value=1.6 Score=49.43 Aligned_cols=107 Identities=14% Similarity=0.091 Sum_probs=75.6
Q ss_pred chHHHHHHHHhCCCCeEEE-EecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVD-IDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~-i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.+| ++.--|+...+..|.+|...+.|+++|+-..... ..+ ..
T Consensus 55 A~~mAdgYaR~t-g~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~G~~~~~---------~~~----~~-------- 112 (518)
T PRK12474 55 VTGAADGYGRIA-GKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVE---------HLQ----YD-------- 112 (518)
T ss_pred HHHHHHHHHHHh-CCCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEeccCchh---------hcC----CC--------
Confidence 455677777665 455554 4444556667889999999999999998643210 000 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....+|++++++...|++|+. ..||++|+++.|-.
T Consensus 113 ~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~ 167 (518)
T PRK12474 113 APLTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVA 167 (518)
T ss_pred CccccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhh
Confidence 013358889999888888899999999988888773 45899999998853
No 262
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=90.26 E-value=2 Score=49.24 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=90.4
Q ss_pred CcHHHHHHHHHHHCCCC--EEEEc----cCCCcHHHHHHHhh-CCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccc
Q 040733 70 RKGADIIVEALERQGVT--TVFAY----PGGASIEIHQSLTR-SNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSG 141 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~--~vFg~----PG~~~~~l~~al~~-~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~G 141 (643)
++..+++.+.|.+..-+ .++.+ +|... + +.|.+ .+=|++ ...-|++++.+|.|.|...-+|-| .+..
T Consensus 278 ~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~--~-~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv--~~fs 352 (581)
T PRK12315 278 ESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFG--L-KEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVI--FVNS 352 (581)
T ss_pred cCHHHHHHHHHHHHhccCCCEEEEeCccccccC--c-HHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEE--EeeH
Confidence 35566666666665433 34444 33322 2 33332 233444 567899999999999985445444 3333
Q ss_pred hhhHHHHHHH-HHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 142 PGVTNIMTGL-MDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 142 pG~~N~~~gl-~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
+=+.-++--| .++...+.||+++........ +-..+|.+.+..+++.+..... ...++.++..+++.|+. ...
T Consensus 353 ~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~ 427 (581)
T PRK12315 353 TFLQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALT----QHE 427 (581)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCC
Confidence 3233444422 234567899999865322222 2235788888899999886554 34566666666666553 235
Q ss_pred CeEEEEcccch
Q 040733 220 GPVLIDIPVDV 230 (643)
Q Consensus 220 GPV~i~iP~Dv 230 (643)
|||+|.+|...
T Consensus 428 gP~~ir~~r~~ 438 (581)
T PRK12315 428 HPVAIRVPEHG 438 (581)
T ss_pred CcEEEEEcCCc
Confidence 99999998753
No 263
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=90.22 E-value=1.5 Score=50.13 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=75.8
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.+|++ .-.|+...++.|.+|...+.|+++|.-.-.... .+.. ..
T Consensus 59 A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~---------~~~~--~~-------- 118 (569)
T PRK09259 59 AGNAAAAAGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREI---------VDLQ--QG-------- 118 (569)
T ss_pred HHHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEEccCCccc---------cccc--CC--------
Confidence 455666766665 45555554 455666779999999999999999986432100 0000 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-...++|++++++...+++|+. .+||+.|+++.|-
T Consensus 119 ~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 172 (569)
T PRK09259 119 DYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKV 172 (569)
T ss_pred CccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHH
Confidence 123468888999988899999999998887777664 4689999999764
No 264
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=90.14 E-value=2.7 Score=42.23 Aligned_cols=92 Identities=18% Similarity=0.084 Sum_probs=58.6
Q ss_pred CCcEEEEEccchhh--HHHHHHHHHhhhCCCCEEEEeCCCccccc-----------CCC-------------CCCccCHH
Q 040733 131 GTPGVCLVSSGPGV--TNIMTGLMDAYSDSIPILAITGQVSQKLL-----------GTD-------------AFQEIPVV 184 (643)
Q Consensus 131 g~~gv~~~t~GpG~--~N~~~gl~~A~~~~vPvlvItg~~~~~~~-----------g~~-------------~~Q~~d~~ 184 (643)
.++.||++ |=|. .-.+..|..|...++|+++|.-+....-. +.. .....|..
T Consensus 80 ~r~VV~i~--GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~ 157 (235)
T cd03376 80 DITVVAFA--GDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLP 157 (235)
T ss_pred CCeEEEEE--cCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHH
Confidence 46666554 4444 24468899999999999999865442210 000 00124677
Q ss_pred HHhhccc-eee--eEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 185 EVTRYMT-KHN--YLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 185 ~~~~~~t-k~~--~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+.+.+- ++. .++.+++++.+.+++|+. .+||+.|++..+
T Consensus 158 ~iA~a~G~~~~~~~~v~~~~el~~al~~a~~-----~~gP~lIev~~~ 200 (235)
T cd03376 158 LIMAAHNIPYVATASVAYPEDLYKKVKKALS-----IEGPAYIHILSP 200 (235)
T ss_pred HHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh-----CCCCEEEEEECC
Confidence 7777763 232 457788888877777775 258999998655
No 265
>PRK05899 transketolase; Reviewed
Probab=90.12 E-value=1.7 Score=50.32 Aligned_cols=116 Identities=15% Similarity=0.024 Sum_probs=78.3
Q ss_pred eEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc-cCCCCCCccCHHHH
Q 040733 109 RSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL-LGTDAFQEIPVVEV 186 (643)
Q Consensus 109 ~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~-~g~~~~Q~~d~~~~ 186 (643)
|++ ...-|++++.+|.|+|...+...+ +.|..+=+.-++..+..+...+.|++++........ ..-..+|.+.+..+
T Consensus 368 R~~d~GIaE~~~vg~A~GlA~~G~~~pv-~~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~edia~ 446 (624)
T PRK05899 368 RYIHYGVREFAMAAIANGLALHGGFIPF-GGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQLAS 446 (624)
T ss_pred CeeeeChhHHHHHHHHHHHHHcCCCeEE-EEEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHHHHH
Confidence 555 478999999999999987623233 334445455666677777778999999864333211 11224688888889
Q ss_pred hhccceee-eEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 187 TRYMTKHN-YLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 187 ~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
++.+.... +...++.++..+++.|++. .++||||.+|..
T Consensus 447 ~r~iP~~~V~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 486 (624)
T PRK05899 447 LRAIPNLTVIRPADANETAAAWKYALER----KDGPSALVLTRQ 486 (624)
T ss_pred HHhCCCcEEEeCCCHHHHHHHHHHHHHc----CCCCEEEEEeCC
Confidence 99887544 3456667777777777652 258999999863
No 266
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=90.08 E-value=0.44 Score=53.75 Aligned_cols=88 Identities=24% Similarity=0.337 Sum_probs=58.7
Q ss_pred cccccchHHHHHHHHhCCCCeEEEEecCc-c----ccCCHHH--HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccc
Q 040733 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDG-S----FIMNLQE--LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANR 556 (643)
Q Consensus 484 g~mG~glpaAiGaalA~p~~~Vv~i~GDG-s----f~m~~~e--L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~ 556 (643)
|-+||++.-|.||++-+|+..++|++||| + ..++... ++...+-+.=+-|+++| ||.|..
T Consensus 153 GeLGy~l~ha~gAa~d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lN--GykI~n----------- 219 (793)
T COG3957 153 GELGYALSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLN--GYKIEN----------- 219 (793)
T ss_pred cchhHHHHHHHHhhcCCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEec--ceeccC-----------
Confidence 67999999999999999999999999999 2 2233332 34444444334455554 454421
Q ss_pred cccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCC
Q 040733 557 ANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK 590 (643)
Q Consensus 557 ~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~ 590 (643)
.+.++. ...-++.++-++||.+-+.|+.
T Consensus 220 -pT~lar-----~s~~el~~~f~G~Gy~p~~veg 247 (793)
T COG3957 220 -PTVLAR-----ISDEELKALFEGYGYEPVFVEG 247 (793)
T ss_pred -ceeeee-----cChHHHHHHHhhCCCceeEecC
Confidence 111111 2345789999999998888876
No 267
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=90.06 E-value=2.5 Score=47.65 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhC------CCcEEEEcCCch-hhHHHHHHHHHHhCC-ceeecCCCCCCCCCCCCCcccc---cCCCC
Q 040733 257 DELALRQTLKLIVES------KNPVLCVGGGCL-NSSEELRKFVGLTGI-PVTCTTMGLGLFPCTDELCLRM---VGMFG 325 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A------krPvIl~G~g~~-~~~~~l~~lae~lg~-PV~tt~~gkg~~~~~hpl~lG~---~g~~~ 325 (643)
-+++++.+++.|++. ++..++.|.+.. .....+.+|++..+. +.+.. .+. + ...+...+. +|...
T Consensus 71 WdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~g~s~~~~~-~~~--~-c~~~~~~~~~~~~G~~~ 146 (512)
T cd02753 71 WDEALSLVASRLKEIKDKYGPDAIAFFGSAKCTNEENYLFQKLARAVGGTNNVDH-CAR--L-CHSPTVAGLAETLGSGA 146 (512)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcHHHHHHHHHHHHhcCCCccCC-Ccc--c-ccchhhHHHHhhcCCCC
Confidence 467888888888753 456666666554 334567788887765 33321 111 0 011111111 12100
Q ss_pred cHHHHHhhhcCCEEEEecCccCcccc---Cccc-cccCCceEEEEcCCcccccCCCCCCeeEe----cCHHHHHHHHHHH
Q 040733 326 TVYANYAVNECDLLLAAGVRFNERMT---SKLE-DFATRAKIVHIDIDSNEIGKVKLPDVSIC----ADAKLVFNRMNMI 397 (643)
Q Consensus 326 ~~~~~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D~~~~L~~L~~~ 397 (643)
.....+-+.++|+||++|+.+.+-.. ..+. .....+++|.||+....... .++..|. .|...++..+...
T Consensus 147 ~~~~~~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~--~Ad~~l~i~PGtD~al~lal~~~l 224 (512)
T cd02753 147 MTNSIADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELAR--FADLHLQLRPGTDVALLNAMAHVI 224 (512)
T ss_pred CCCCHHHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchH--hhCeeeCCCCCcHHHHHHHHHHHH
Confidence 00012346899999999998642211 1111 12245789999988876654 3444443 4555444433333
Q ss_pred H
Q 040733 398 L 398 (643)
Q Consensus 398 l 398 (643)
+
T Consensus 225 ~ 225 (512)
T cd02753 225 I 225 (512)
T ss_pred H
Confidence 3
No 268
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=89.99 E-value=1.6 Score=40.76 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=65.8
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKS 568 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~ 568 (643)
+..+|-|.+.+. ++|++++---++...+..|.++...+.|+++|+-+....+.-. . +. .
T Consensus 53 A~~~A~g~~r~~--~~v~~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~~~~~~----------~-~~--------~ 111 (160)
T cd07034 53 AAEAAIGASAAG--ARAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGPSTGL----------P-KP--------D 111 (160)
T ss_pred HHHHHHHHHhhC--CcEEEeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCCCCCCC----------C-Cc--------C
Confidence 667777877754 3355555555666678999999999999999997655322100 0 00 0
Q ss_pred CCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEEEE
Q 040733 569 EIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLLDV 612 (643)
Q Consensus 569 ~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lIeV 612 (643)
....|...+.+. .....++++++|+.+.+++|+. .++|++|-+
T Consensus 112 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 112 QSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred cHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 122445555555 4667789999998887777663 357887753
No 269
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=89.95 E-value=0.67 Score=46.07 Aligned_cols=119 Identities=21% Similarity=0.312 Sum_probs=77.6
Q ss_pred HHHHhCCCc------EEEEcCCch---hhHHHHHHHHHHhCCceeecCCC--CCCCCCCCCCcccccCCCCcHHHHHhhh
Q 040733 266 KLIVESKNP------VLCVGGGCL---NSSEELRKFVGLTGIPVTCTTMG--LGLFPCTDELCLRMVGMFGTVYANYAVN 334 (643)
Q Consensus 266 ~~L~~AkrP------vIl~G~g~~---~~~~~l~~lae~lg~PV~tt~~g--kg~~~~~hpl~lG~~g~~~~~~~~~~l~ 334 (643)
+.|.++.|| +++.|+... +..+.|..||+++|+-|-.|-.+ -|.+| +.+-+|-.| . +-
T Consensus 205 ~~ltkseRPdL~sAkvVVsGGR~LKs~enFkll~~LAdklgaavGAtRaaVDaGyvp--NdlQiGQTG---K------IV 273 (336)
T KOG3954|consen 205 QELTKSERPDLTSAKVVVSGGRGLKSGENFKLLYDLADKLGAAVGATRAAVDAGYVP--NDLQIGQTG---K------IV 273 (336)
T ss_pred hhcccccCCccccceEEEECCcccCCcccceehHHHHHHhchhhchhhhhhccCcCC--Ccccccccc---c------ee
Confidence 456667777 677887555 34567899999999999877544 34444 344455433 2 34
Q ss_pred cCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 335 ECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 335 ~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
...|-|++|.+=.-. .+......+.|+.|+.||+..= ..-+|+.+++|+-.++.+|.+.|.
T Consensus 274 APeLYiAvGisGAIQ---HLAGmKDSKvIvAINkDpdAPI-FqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 274 APELYIAVGISGAIQ---HLAGMKDSKVIVAINKDPDAPI-FQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred ccceEEEEeccHHHH---HhhcCccceEEEEecCCCCCCc-eeeecccchhhHHHHhHHHHHhcc
Confidence 678899999763211 1111223445778888886421 123789999999999988887765
No 270
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=89.85 E-value=0.9 Score=51.88 Aligned_cols=106 Identities=20% Similarity=0.155 Sum_probs=75.5
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++.++++- --|++..++.|.+|...+.|+++|.-.-.... .+ ..
T Consensus 57 A~~~Adgyar~t-g~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~---------~~----~~-------- 114 (561)
T PRK06048 57 AAHAADGYARAT-GKVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSM---------IG----ND-------- 114 (561)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEeccCCccc---------cC----CC--------
Confidence 577888888776 466666554 34555668999999999999998874221100 00 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-...++|++++++...+++|+. .+||+.|+++.|-
T Consensus 115 ~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv 168 (561)
T PRK06048 115 AFQEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDV 168 (561)
T ss_pred CccccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhh
Confidence 123468888888888788899999998888887765 4699999998764
No 271
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=89.80 E-value=2.7 Score=42.31 Aligned_cols=95 Identities=16% Similarity=0.043 Sum_probs=56.8
Q ss_pred CCcEEEEEccchhhH--HHHHHHHHhhhCCCCEEEEeCCCccc-ccC-CC-----------------CCCccCHHHHhhc
Q 040733 131 GTPGVCLVSSGPGVT--NIMTGLMDAYSDSIPILAITGQVSQK-LLG-TD-----------------AFQEIPVVEVTRY 189 (643)
Q Consensus 131 g~~gv~~~t~GpG~~--N~~~gl~~A~~~~vPvlvItg~~~~~-~~g-~~-----------------~~Q~~d~~~~~~~ 189 (643)
+|+.||++ |=|.. -.+..+.++...++||++|.-+.... +.+ +. .+...|...+.+.
T Consensus 87 ~~~Vv~i~--GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a 164 (237)
T cd02018 87 KKDVVVIG--GDGATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAAT 164 (237)
T ss_pred CCcEEEEe--CchHHHhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHH
Confidence 35555543 44432 24667777777999999998654421 111 00 1223577888887
Q ss_pred cceeeeE---eCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchh
Q 040733 190 MTKHNYL---VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231 (643)
Q Consensus 190 ~tk~~~~---v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~ 231 (643)
+--...+ +.+++++..+|++|+. ..+||++|++..|..
T Consensus 165 ~G~~~~~~~~v~~~~~l~~al~~al~----~~~GP~lI~v~i~c~ 205 (237)
T cd02018 165 HGCVYVARLSPALKKHFLKVVKEAIS----RTDGPTFIHAYTPCI 205 (237)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHHHh----cCCCCEEEEEeCCCC
Confidence 7544443 6666666666666653 235899999987643
No 272
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=89.76 E-value=1.7 Score=49.44 Aligned_cols=107 Identities=15% Similarity=0.047 Sum_probs=75.7
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.+|++-=| |....+..+.+|...+.|+++|.-.-.... ...+
T Consensus 51 A~~mAdgyar~t-gkpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~G~~~~~~------------~~~~--------- 108 (549)
T PRK06457 51 AALAASVEAKIT-GKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDM------------IGHD--------- 108 (549)
T ss_pred HHHHHHHHHHHh-CCCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEecCCCccc------------cCCC---------
Confidence 455777777776 56777665444 555568999999999999999886422100 0000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lIeV~v~~~ 617 (643)
.....|...+.+.+-....++++++++...+++|+. ..||+.|+++.|-.
T Consensus 109 ~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv~ 162 (549)
T PRK06457 109 YFQEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISKRGVAHINLPVDIL 162 (549)
T ss_pred cccccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhHh
Confidence 124468888888888888999999988777777653 56999999998753
No 273
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=89.73 E-value=3 Score=47.68 Aligned_cols=113 Identities=13% Similarity=0.048 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHhC--CCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCC--CCCCCcccccCCCCcHHHH
Q 040733 256 PDELALRQTLKLIVES--KNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFP--CTDELCLRMVGMFGTVYAN 330 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~A--krPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~--~~hpl~lG~~g~~~~~~~~ 330 (643)
.-+++++.+++.|++. ++.+++.++... +..-...+|+..+|.+-+.........+ ......+|.. .++.. .
T Consensus 82 SWDEAl~~IA~kL~~~~~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~--~~t~~-~ 158 (574)
T cd02767 82 SWDEAFAEIAARLRALDPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGVG--KGTVS-L 158 (574)
T ss_pred cHHHHHHHHHHHHhhhCCCcEEEEecCCCccHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCCC--CCCCC-H
Confidence 3577888888888876 345555544333 3444567899989876443211000000 0011112211 11111 2
Q ss_pred HhhhcCCEEEEecCccCccccC---ccc-cccCCceEEEEcCCcc
Q 040733 331 YAVNECDLLLAAGVRFNERMTS---KLE-DFATRAKIVHIDIDSN 371 (643)
Q Consensus 331 ~~l~~aDlvL~vG~~~~~~~t~---~~~-~~~~~~~iI~Id~d~~ 371 (643)
+-+.++|+||++|......... .+. .....+|+|.||+...
T Consensus 159 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 159 EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 3467999999999986432211 111 1124679999998664
No 274
>PRK06163 hypothetical protein; Provisional
Probab=89.65 E-value=22 Score=34.83 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=78.6
Q ss_pred EEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhh-HHHHHHHHHhhh-CCCCEEEE
Q 040733 88 VFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGV-TNIMTGLMDAYS-DSIPILAI 164 (643)
Q Consensus 88 vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~-~N~~~gl~~A~~-~~vPvlvI 164 (643)
++.=-|.....++..- ..+-+++..--=..+.-+|.|.+.+. +++.||++ |=|. .=.+..|..|.. ..+|+++|
T Consensus 32 iv~D~G~~~~~~~~~~-~~~~~~~~~GsMG~glpaAiGaalA~p~r~Vv~i~--GDG~f~m~~~eL~Ta~~~~~lpi~iv 108 (202)
T PRK06163 32 VIGGIGNTNFDLWAAG-QRPQNFYMLGSMGLAFPIALGVALAQPKRRVIALE--GDGSLLMQLGALGTIAALAPKNLTII 108 (202)
T ss_pred EEECCCccHHHHHHhh-cCCCCeEeecccccHHHHHHHHHHhCCCCeEEEEE--cchHHHHHHHHHHHHHHhcCCCeEEE
Confidence 4444454333344332 22223443222233445788887765 35555543 4443 334577888754 47898888
Q ss_pred eCCCcccc-cCC---CCCCccCHHHHhhcccee-eeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 165 TGQVSQKL-LGT---DAFQEIPVVEVTRYMTKH-NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 165 tg~~~~~~-~g~---~~~Q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.-+..... .+. ...+..|...+.+.+--. .+++.+.+++...+++|+. ..||+.|++..|
T Consensus 109 V~NN~~yg~~~~~~~~~~~~~Df~~lA~a~G~~~~~~v~~~~el~~al~~a~~-----~~~p~lIeV~i~ 173 (202)
T PRK06163 109 VMDNGVYQITGGQPTLTSQTVDVVAIARGAGLENSHWAADEAHFEALVDQALS-----GPGPSFIAVRID 173 (202)
T ss_pred EEcCCchhhcCCccCCCCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 86553221 111 112346777788777544 5689999988888888864 358999999876
No 275
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=89.62 E-value=1.6 Score=49.77 Aligned_cols=117 Identities=18% Similarity=0.141 Sum_probs=79.9
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-. .+.-+|-|.+... +++.++++-=| |++..++.|..|...++|+++|.-.=..... +
T Consensus 40 i~~i~~~hE~---~A~~~Adgyar~t-g~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~g~~~~~~~---------~ 106 (558)
T TIGR00118 40 IEHILVRHEQ---GAAHAADGYARAS-GKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLI---------G 106 (558)
T ss_pred ceEEEeCcHH---HHHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc---------C
Confidence 4555443322 2456688887776 46666655433 4555689999999999999998853221100 0
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.. .....|...+++.+-....++++++++...+++|+. ..||+.|+++.|-
T Consensus 107 ----~~--------~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv 162 (558)
T TIGR00118 107 ----SD--------AFQEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV 162 (558)
T ss_pred ----CC--------CCcccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence 00 123468888999998999999999998888887774 2589999999773
No 276
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=89.59 E-value=1.5 Score=48.14 Aligned_cols=93 Identities=22% Similarity=0.177 Sum_probs=60.9
Q ss_pred cEEEEEccchhhHHH---HHHHHHhhhCCCCEEEEeCCCcccccCC-CCCC--ccCHHHHhhccceeeeEeCC--cCcHH
Q 040733 133 PGVCLVSSGPGVTNI---MTGLMDAYSDSIPILAITGQVSQKLLGT-DAFQ--EIPVVEVTRYMTKHNYLVLD--VDDIP 204 (643)
Q Consensus 133 ~gv~~~t~GpG~~N~---~~gl~~A~~~~vPvlvItg~~~~~~~g~-~~~Q--~~d~~~~~~~~tk~~~~v~~--~~~i~ 204 (643)
..++++..|=|.+|- .-++.-|..-++|||++.-+... .++. ...| ..|.....+.+--...+|.. +..+.
T Consensus 223 ~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~y-aig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~ 301 (433)
T PLN02374 223 DDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVR 301 (433)
T ss_pred CCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCE-eecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHH
Confidence 456677788888773 33788888999999999965431 1221 0112 22455556665555566643 33566
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcc
Q 040733 205 RIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 205 ~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
+.+.+|++.|+.+. ||+.|++-
T Consensus 302 ~a~~~A~~~Ar~g~-gP~LIe~~ 323 (433)
T PLN02374 302 EVAKEAIERARRGE-GPTLVECE 323 (433)
T ss_pred HHHHHHHHHHHHcC-CCEEEEEE
Confidence 77789999998875 99999974
No 277
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.57 E-value=1.9 Score=49.36 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=74.6
Q ss_pred chHHHHHHHHhCCCCeEEEE-ecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDI-DGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i-~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++.+++ +---|++..++.+.+|...+.|+++|.-.=... ..+ ..
T Consensus 53 A~~~Adgyar~t-g~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~G~~~~~---------~~~----~~-------- 110 (563)
T PRK08527 53 AVHAADGYARAS-GKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNS---------LIG----TD-------- 110 (563)
T ss_pred HHHHHHHHHhhh-CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCcc---------ccC----CC--------
Confidence 566778877776 4555544 444466667899999999999988887421100 000 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|-..+++.+-....+|++++++..+|++|+. ..||+.|+++.|-
T Consensus 111 ~~q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv 164 (563)
T PRK08527 111 AFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDV 164 (563)
T ss_pred CCcccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 124468888899888888899999999988888774 3589999999774
No 278
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=89.51 E-value=7.7 Score=44.42 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=92.4
Q ss_pred HHHHHHHC-CCCEEEEcc-CCCcHHHHHHHhhCC-CeEEecCCh---hHHHHHHHHHHHHh-CCcEEEEEccchhhHHHH
Q 040733 76 IVEALERQ-GVTTVFAYP-GGASIEIHQSLTRSN-IRSILPRHE---QGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 76 lv~~L~~~-GV~~vFg~P-G~~~~~l~~al~~~~-i~~i~~~hE---~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~ 148 (643)
+.+.|.+. .=+.++..- |+........+.-.. -+++....= ..+.-+|.|.+-+. +++.||++-= -++.-.+
T Consensus 364 ~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GD-Gsf~m~~ 442 (574)
T PRK09124 364 LARQISEFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGD-GGFSMLM 442 (574)
T ss_pred HHHHHHhhcCCCcEEEEcCCHHHHHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecC-cHHhccH
Confidence 45555443 223444444 433322222232222 556643321 12667888888776 4666665433 3555556
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccc--------cCC---C-CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKL--------LGT---D-AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATS 216 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~--------~g~---~-~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s 216 (643)
..|..|...++|+++|.-+..... .+. + .++..|...+.+.+-...+++.+++++...+++|+.
T Consensus 443 ~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~---- 518 (574)
T PRK09124 443 GDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVEKASELDGALQRAFA---- 518 (574)
T ss_pred HHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh----
Confidence 889999999999999986554211 011 0 134468888888888888999999999888888864
Q ss_pred CCCCeEEEEcccc
Q 040733 217 GRPGPVLIDIPVD 229 (643)
Q Consensus 217 ~~~GPV~i~iP~D 229 (643)
..||+.|++..|
T Consensus 519 -~~~p~lIev~i~ 530 (574)
T PRK09124 519 -HDGPALVDVVTA 530 (574)
T ss_pred -CCCCEEEEEEec
Confidence 358999999876
No 279
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.47 E-value=7.5 Score=44.66 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=75.3
Q ss_pred chHHHHHHHHhCCCCeEE-EEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVV-DIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv-~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.+ +++.--|++..++.|.+|...+.|+++|.-.=.... .+ ..
T Consensus 71 A~~~AdgYar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~---------~~----~~-------- 128 (587)
T PRK06965 71 AVHAADGYARAT-GKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAA---------IG----QD-------- 128 (587)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccc---------cC----CC--------
Confidence 455888888776 34544 444555666779999999999999888874211100 00 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+.+.+-....+|++++++.+.+++|+. ..||+.|+++.|-
T Consensus 129 ~~q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 129 AFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred CcccccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence 123468888999998899999999988777777663 3589999999874
No 280
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=89.32 E-value=7 Score=44.81 Aligned_cols=155 Identities=15% Similarity=0.185 Sum_probs=95.1
Q ss_pred CcHHHHHHHHHHH-CCCCEEEEcc-CCCcHHHHHHHhhCC-CeEEecCChhH----HHHHHHHHHHHh-CCcEEEEEccc
Q 040733 70 RKGADIIVEALER-QGVTTVFAYP-GGASIEIHQSLTRSN-IRSILPRHEQG----GIFAAEGYARSS-GTPGVCLVSSG 141 (643)
Q Consensus 70 ~~~a~~lv~~L~~-~GV~~vFg~P-G~~~~~l~~al~~~~-i~~i~~~hE~~----A~~~A~Gyar~s-g~~gv~~~t~G 141 (643)
++..+ +++.|.+ ..=+.++..= |+........+.-.. -+++.. .-.+ +.-+|.|.+-+. +++.||++-=|
T Consensus 381 l~~~~-~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~-~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG 458 (579)
T TIGR03457 381 LHPRQ-VLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAP-MSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDG 458 (579)
T ss_pred cCHHH-HHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcC-CccccccchHHHHHhhhhhCCCCcEEEEEcch
Confidence 44444 3343433 3334555443 444344434443223 555533 2222 445788888776 46666665433
Q ss_pred hhhHHHHHHHHHhhhCCCCEEEEeCCCccccc---------CC----CCCCc-cCHHHHhhccceeeeEeCCcCcHHHHH
Q 040733 142 PGVTNIMTGLMDAYSDSIPILAITGQVSQKLL---------GT----DAFQE-IPVVEVTRYMTKHNYLVLDVDDIPRII 207 (643)
Q Consensus 142 pG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~---------g~----~~~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l 207 (643)
|+.=....|..|...++|+++|.-+...... +. ..++. .|...+.+.+=-+.+++.+++++...|
T Consensus 459 -~f~m~~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~~~~el~~al 537 (579)
T TIGR03457 459 -AWGMSMNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVDKPEDVGPAL 537 (579)
T ss_pred -HHhccHHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHH
Confidence 3333458999999999999988865442210 10 01333 488888888877888999999999999
Q ss_pred HHHHHHhhcCCCCeEEEEcccc
Q 040733 208 KEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 208 ~~A~~~A~s~~~GPV~i~iP~D 229 (643)
++|++... ..+|+.|++..|
T Consensus 538 ~~a~~~~~--~~~p~lieV~v~ 557 (579)
T TIGR03457 538 KKAIAAQA--EGKTTVIEIVCT 557 (579)
T ss_pred HHHHhhCC--CCCcEEEEEEeC
Confidence 99886532 247999999876
No 281
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.31 E-value=8 Score=39.86 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHHCCCC--EEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHH
Q 040733 71 KGADIIVEALERQGVT--TVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~--~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~ 147 (643)
..-.+|.++|.++|+. .+.-+.|......+....+ .......|-. +.-+|.|...+. +++.||++-=|-...+.
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~~--~~~~~~~mG~-alp~AiGaklA~pd~~VVai~GDG~~~~iG 94 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVVIVSGIGQAAKMPHYIN--VNGFHTLHGR-AIPAATAVKATNPELTVIAEGGDGDMYAEG 94 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHcc--CCCCCccccc-HHHHHHHHHHHCCCCcEEEEECchHHhhCc
Confidence 4566888999998865 3344444222222222212 2223333444 446777877776 46666655444333344
Q ss_pred HHHHHHhhhCCCCEEEEeCCCccc-----------ccCC-------CCC-CccCHHHHhhccc-eeeeE--eCCcCcHHH
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQK-----------LLGT-------DAF-QEIPVVEVTRYMT-KHNYL--VLDVDDIPR 205 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~-----------~~g~-------~~~-Q~~d~~~~~~~~t-k~~~~--v~~~~~i~~ 205 (643)
+..|..|...++||++|.-+.... ..|. +.. ...|...+.+.+- ++..+ +.+++++.+
T Consensus 95 ~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~ 174 (280)
T PRK11869 95 GNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKE 174 (280)
T ss_pred HHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHH
Confidence 899999999999999997533211 0010 111 1246677776653 23332 556677777
Q ss_pred HHHHHHHHhhcCCCCeEEEEcc
Q 040733 206 IIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 206 ~l~~A~~~A~s~~~GPV~i~iP 227 (643)
.|++|+. .+||++|++-
T Consensus 175 ~i~~Al~-----~~Gp~lIeV~ 191 (280)
T PRK11869 175 ILKEAIK-----HKGLAIVDIF 191 (280)
T ss_pred HHHHHHh-----CCCCEEEEEE
Confidence 7777764 3599999873
No 282
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=89.27 E-value=2.6 Score=44.88 Aligned_cols=93 Identities=23% Similarity=0.201 Sum_probs=62.4
Q ss_pred EEEEEccchhhHHH---HHHHHHhhhCCCCEEEEeCCCcccccCCC---CCCccCHHHHhhccceeeeEeCCcC--cHHH
Q 040733 134 GVCLVSSGPGVTNI---MTGLMDAYSDSIPILAITGQVSQKLLGTD---AFQEIPVVEVTRYMTKHNYLVLDVD--DIPR 205 (643)
Q Consensus 134 gv~~~t~GpG~~N~---~~gl~~A~~~~vPvlvItg~~~~~~~g~~---~~Q~~d~~~~~~~~tk~~~~v~~~~--~i~~ 205 (643)
.++++..|=|.++- .-++..|..-++|+|+|.-+.... ++.. .....|.....+.+--...+|...+ .+..
T Consensus 158 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~-i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~ 236 (341)
T CHL00149 158 RVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWA-IGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVRE 236 (341)
T ss_pred CEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCee-eecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHH
Confidence 56667778888873 335777888899999998654421 1110 1112456667777666677776554 3566
Q ss_pred HHHHHHHHhhcCCCCeEEEEccc
Q 040733 206 IIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 206 ~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
.+++|++.|+.+. ||+.|++-.
T Consensus 237 a~~~A~~~ar~~~-gP~lIev~t 258 (341)
T CHL00149 237 VAKEAVERARQGD-GPTLIEALT 258 (341)
T ss_pred HHHHHHHHHHhCC-CCEEEEEEE
Confidence 7889999988764 899999843
No 283
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=89.26 E-value=7.8 Score=44.69 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=90.6
Q ss_pred CcHHHHHHHHHHHCCCC--EEEE----ccCCCcHHHHHHHhh-CCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccc
Q 040733 70 RKGADIIVEALERQGVT--TVFA----YPGGASIEIHQSLTR-SNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSG 141 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~--~vFg----~PG~~~~~l~~al~~-~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~G 141 (643)
++..+++.++|.+..-+ .|+. ++|+..+ +.+.+ .+=|++ ...-|++++.+|.|.|...-||-|++ ..
T Consensus 357 ~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~---~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~--fs 431 (641)
T PLN02234 357 QSYTSCFVEALIAEAEADKDIVAIHAAMGGGTML---NLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTI--YS 431 (641)
T ss_pred CCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcch---HHHHHHccccccCCCcCHHHHHHHHHHHHHCCCeEEEEe--hH
Confidence 46777777777766543 2333 3443333 33332 233444 56789999999999999666666654 44
Q ss_pred hhhHHHHHHH-HHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcC
Q 040733 142 PGVTNIMTGL-MDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 142 pG~~N~~~gl-~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
+=..-++.-| .++...+.||+++.- ... ..|. ..+|.+....+++.+..... ...++.++..+++.|+. .
T Consensus 432 ~Fl~RA~DQI~~dva~~~lpV~~v~~-~aG-~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~~----~ 505 (641)
T PLN02234 432 SFMQRAYDQVVHDVDLQKLPVRFAID-RAG-LMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAA----I 505 (641)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEe-CCc-cCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----C
Confidence 3333444433 355678999987752 211 1232 24677777888888765333 34556666666655543 3
Q ss_pred CCCeEEEEcccch
Q 040733 218 RPGPVLIDIPVDV 230 (643)
Q Consensus 218 ~~GPV~i~iP~Dv 230 (643)
..+||+|..|...
T Consensus 506 ~~~Pv~ir~~R~~ 518 (641)
T PLN02234 506 DDRPSCFRYHRGN 518 (641)
T ss_pred CCCCEEEEeeccc
Confidence 4589999999753
No 284
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=89.09 E-value=1.7 Score=45.65 Aligned_cols=106 Identities=22% Similarity=0.218 Sum_probs=67.5
Q ss_pred HHHHHHHHh---CCcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCCC---CCCccCHHHHhhccce
Q 040733 122 AAEGYARSS---GTPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGTD---AFQEIPVVEVTRYMTK 192 (643)
Q Consensus 122 ~A~Gyar~s---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~~---~~Q~~d~~~~~~~~tk 192 (643)
.|.|.+.+. +...++++..|=|.++ ...++.-|...+.|+|+|.-+... .+.+. .....|...+.+.+--
T Consensus 118 ~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~y-g~s~~~~~~~~~~~~a~~A~a~G~ 196 (315)
T TIGR03182 118 LATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLY-AMGTSVERSSSVTDLYKRGESFGI 196 (315)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCc-cccCCHHHHhCCcCHHHHHHhCCC
Confidence 455555544 3345666667877776 234566778889999999876531 11111 1112355566666655
Q ss_pred eeeEeCC--cCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 193 HNYLVLD--VDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 193 ~~~~v~~--~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..++|.. +.++.+.+++|++.+..+. ||+.|++-..
T Consensus 197 ~~~~Vdg~d~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 234 (315)
T TIGR03182 197 PGERVDGMDVLAVREAAKEAVERARSGK-GPILLEMKTY 234 (315)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHccC-CCEEEEEeCC
Confidence 6667764 4567888999999888764 9999998654
No 285
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=88.98 E-value=2 Score=48.75 Aligned_cols=108 Identities=14% Similarity=0.027 Sum_probs=73.6
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++ .--|+...++.|.+|...+.|+++|.-.-. +... + ...
T Consensus 60 A~~~Adgyar~t-g~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~g~~~-~~~~--------~---~~~-------- 118 (530)
T PRK07092 60 VVGMADGYAQAT-GNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQA-RSIL--------P---FEP-------- 118 (530)
T ss_pred HHHHHHHHHHHh-CCceEEEeccCchHHHHHHHHHHHhhcCCCEEEEecCCc-cccc--------C---ccc--------
Confidence 455888888877 46666655 334555668999999999999988774211 1000 0 000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+.+.+-....++++++++.+.+++|+. ..||+.|+++.|-.
T Consensus 119 ~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~~ 173 (530)
T PRK07092 119 FLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDDW 173 (530)
T ss_pred hhcccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHHh
Confidence 012357778888887788899999998887777764 35899999997753
No 286
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=88.90 E-value=1.4 Score=45.93 Aligned_cols=101 Identities=26% Similarity=0.293 Sum_probs=64.6
Q ss_pred HHHHH---hCCcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCCC-CCC--ccCHHHHhhccceeee
Q 040733 125 GYARS---SGTPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGTD-AFQ--EIPVVEVTRYMTKHNY 195 (643)
Q Consensus 125 Gyar~---sg~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~~-~~Q--~~d~~~~~~~~tk~~~ 195 (643)
|+|++ .|+..|+++..|=|+++ ..-+|--|...+.|||+|+-+.... +.+. .-| ..+..+..+.+--..+
T Consensus 112 G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~a-ist~~~~~~~~~~~~~~a~~~gip~~ 190 (300)
T PF00676_consen 112 GVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYA-ISTPTEEQTASPDIADRAKGYGIPGI 190 (300)
T ss_dssp HHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEE-TTEEHHHHCSSSTSGGGGGGTTSEEE
T ss_pred chhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcc-cccCccccccccchhhhhhccCCcEE
Confidence 66655 47788999999988876 5668888889999999998543211 0100 000 0111222333333344
Q ss_pred Ee--CCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 196 LV--LDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 196 ~v--~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
.| .++..+.+++++|++.++.++ |||.|++=
T Consensus 191 ~VDG~D~~av~~a~~~A~~~~R~g~-gP~lie~~ 223 (300)
T PF00676_consen 191 RVDGNDVEAVYEAAKEAVEYARAGK-GPVLIEAV 223 (300)
T ss_dssp EEETTSHHHHHHHHHHHHHHHHTTT---EEEEEE
T ss_pred EECCEeHHHHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 44 577788899999999999887 99999873
No 287
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=88.89 E-value=1 Score=51.44 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=80.2
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....- ..+.-+|-|.+..+ +++-++++- --|++..++.|.+|...+.|+++|.-.-....+ +
T Consensus 49 i~~i~~rhE---~~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~---------~ 115 (566)
T PRK07282 49 IRHILARHE---QGALHEAEGYAKST-GKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGI---------G 115 (566)
T ss_pred ceEEEecCH---HHHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecccccccC---------C
Confidence 455544332 22566777877766 455555543 334556689999999999999998864332211 0
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.. .....|...+++.+-....+|++++++.+.+++|+. .+||+.|+++.|-.
T Consensus 116 ----~~--------~~q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 172 (566)
T PRK07282 116 ----KD--------AFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDVS 172 (566)
T ss_pred ----CC--------CccccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhhh
Confidence 00 023457788899888889999999988888877764 35899999998754
No 288
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=88.89 E-value=9.1 Score=36.60 Aligned_cols=103 Identities=13% Similarity=0.157 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEEccchhhHH-HHHHHHHhhhCCC-CEEEEeCCCcccc-cCC---CCCCccCHHHHhhccc
Q 040733 118 GGIFAAEGYARSSGTPGVCLVSSGPGVTN-IMTGLMDAYSDSI-PILAITGQVSQKL-LGT---DAFQEIPVVEVTRYMT 191 (643)
Q Consensus 118 ~A~~~A~Gyar~sg~~gv~~~t~GpG~~N-~~~gl~~A~~~~v-PvlvItg~~~~~~-~g~---~~~Q~~d~~~~~~~~t 191 (643)
.+.-+|.|.+.+..++.||+ .|=|... .+..+..|...+. |+++|.-+..... .+. ......|...+.+.+-
T Consensus 46 ~~lp~AiGaala~~~~vv~i--~GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~G 123 (179)
T cd03372 46 LASSIGLGLALAQPRKVIVI--DGDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKACG 123 (179)
T ss_pred hHHHHHHHHHhcCCCcEEEE--ECCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHcC
Confidence 34457777776655444444 4655554 2578888888875 6877764433221 111 1112357777777775
Q ss_pred eeeeEeC-CcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 192 KHNYLVL-DVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 192 k~~~~v~-~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
-....+. +++++.+.+++|+ .||..|++..|
T Consensus 124 ~~~~~v~~~~~el~~al~~a~-------~gp~lIev~~~ 155 (179)
T cd03372 124 LDNVATVASEEAFEKAVEQAL-------DGPSFIHVKIK 155 (179)
T ss_pred CCeEEecCCHHHHHHHHHHhc-------CCCEEEEEEEc
Confidence 5556676 6666665555554 48999999875
No 289
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=88.88 E-value=1.6 Score=49.57 Aligned_cols=106 Identities=12% Similarity=0.043 Sum_probs=73.5
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+..+ +++.+|++ ---|+...++.|.+|...+.|+++|.-.-.... .. ..
T Consensus 48 A~~~Adgyar~t-g~~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~G~~~~~~---------~~----~~-------- 105 (539)
T TIGR02418 48 AAFMAQAVGRIT-GKPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRAD---------LL----KL-------- 105 (539)
T ss_pred HHHHHHHHHHHh-CCceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEeCCCcccc---------cc----cC--------
Confidence 455777777776 45555554 344555568999999999999999886422110 00 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
..+..|-..+++.+-....++++++++.+.+++|+. .+||+.|+++.|-
T Consensus 106 ~~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv 159 (539)
T TIGR02418 106 THQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV 159 (539)
T ss_pred cccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence 023467788888887788899999998877777663 3589999999884
No 290
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=88.81 E-value=1.7 Score=47.13 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHH---hCCceeec---CCCCCCCCCCCCCcc-cccC-----CC
Q 040733 259 LALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGL---TGIPVTCT---TMGLGLFPCTDELCL-RMVG-----MF 324 (643)
Q Consensus 259 ~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~---lg~PV~tt---~~gkg~~~~~hpl~l-G~~g-----~~ 324 (643)
...++++++|..|||.+|+-|+|-. .++.++++++|+ -|+-|=-- ..|| .|- |=+.+ --.+ ..
T Consensus 294 ~~~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVAGR--MPG-HMNVLLAEA~VPYd~v~ 370 (462)
T PRK09444 294 TTAEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGR--LPG-HMNVLLAEAKVPYDIVL 370 (462)
T ss_pred cCHHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccccc--CCC-cceeEEeecCCCHHHHH
Confidence 4567788999999999999999865 455555555555 45555211 0111 111 11110 0000 00
Q ss_pred CcHHHHHhhhcCCEEEEecCc
Q 040733 325 GTVYANYAVNECDLLLAAGVR 345 (643)
Q Consensus 325 ~~~~~~~~l~~aDlvL~vG~~ 345 (643)
--...|.-+.+.|++|++|..
T Consensus 371 eMdeIN~~F~~tDvalVIGAN 391 (462)
T PRK09444 371 EMDEINDDFADTDTVLVIGAN 391 (462)
T ss_pred hHHhhccccccCCEEEEecCc
Confidence 113345567799999999976
No 291
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=88.67 E-value=1.5 Score=50.17 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=75.1
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.++++.=| |+...+..|.+|...+.|+++|.-.-..... +. .
T Consensus 63 A~~~Adgyar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~---------~~----~-------- 120 (564)
T PRK08155 63 AGFIAQGMARTT-GKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMI---------GT----D-------- 120 (564)
T ss_pred HHHHHHHHHHHc-CCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCcccc---------cC----C--------
Confidence 566788888776 56766665433 4555689999999999999998753322100 00 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-....++++++++...+++|+. .+||+.||++.|-
T Consensus 121 ~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv 174 (564)
T PRK08155 121 AFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDV 174 (564)
T ss_pred CccccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 023467788888888888899999988887777664 3599999998764
No 292
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=88.55 E-value=0.54 Score=47.98 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=43.6
Q ss_pred HHHhhhcCCEEEEecCccCccccCccc--cccCCceEEEEcCCcccccCCCCCCeeEecCHHHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLE--DFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVF 391 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~--~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L 391 (643)
+.+.+.+||++|++|+++.-.....+. ....++++|.|+.++..+++ .+++.+.+++.++|
T Consensus 198 a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d~--~a~~~i~~~~~~~l 260 (260)
T cd01409 198 AAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRADH--LATLKVDARCGEVL 260 (260)
T ss_pred HHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCCc--cccEEEeCChhhhC
Confidence 456778999999999998644333322 12246789999999887664 46888888887654
No 293
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=88.53 E-value=2.2 Score=40.73 Aligned_cols=116 Identities=10% Similarity=0.126 Sum_probs=67.3
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccC-----CHHHHH-HHHHhCCCeEEEEEeCCCchhhHHH
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM-----NLQELA-AIKAENIPVKILLINNQYLGMNVEY 547 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m-----~~~eL~-Ta~~~~lpv~ivV~NN~~~g~~~~~ 547 (643)
+.+++..+-. = -..++.|.|.+++.+ ...+...-=+.|+. +...+. -....++|+. |+..-+ ++.-
T Consensus 47 ~~r~i~~gIa-E-~~~vg~a~GlA~~G~-~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g-~~~~--- 118 (178)
T PF02779_consen 47 PGRFINTGIA-E-QNMVGMAAGLALAGG-LRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAG-LGYG--- 118 (178)
T ss_dssp TTTEEE--S--H-HHHHHHHHHHHHHSS-SEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEES-GGGS---
T ss_pred CceEEecCcc-h-hhccceeeeeeeccc-ccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecC-cccc---
Confidence 4467764321 1 115888889988863 13333333444555 222233 4567789988 554432 2210
Q ss_pred HHHhhcccccccccCCCCCCCCCCCCHHHHHhHC-CCCEEEeCChhHHHHHHHHHHh--CCCcEEEEEE
Q 040733 548 EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC-GIPAARVTKKKDVRAAIQLMLE--TPGPYLLDVM 613 (643)
Q Consensus 548 q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~al~--~~gp~lIeV~ 613 (643)
.+ .. ..+..+...+-+++ |+..+...++.|++..++++++ .++|++|-..
T Consensus 119 -----~~--G~---------tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 119 -----GD--GG---------THHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp -----TT--GT---------TTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred -----cc--cc---------cccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 00 01 12345556666666 8888999999999999999999 6899988665
No 294
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=88.41 E-value=4.4 Score=49.12 Aligned_cols=141 Identities=14% Similarity=0.035 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHh------CCCcEEEEcCCchh--hHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHH
Q 040733 257 DELALRQTLKLIVE------SKNPVLCVGGGCLN--SSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~------AkrPvIl~G~g~~~--~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~ 328 (643)
-+++++.+++.|.+ .+...++.|.+... ......+|+..+|.+........+.....++...|..+. +.
T Consensus 141 WdEAld~IA~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~r~~~~lG~~~~~~~~~~~~~~~~~~~~~G~~~~-~~-- 217 (912)
T TIGR03479 141 WDEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSRFANLIGGVSPDIFDDYGDLYTGAFHTFGKAHD-SA-- 217 (912)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCchhhHHHHHHHHHHHHcCCCccccccccCCCCCcccceeccCcc-CC--
Confidence 46778877777654 23333333544432 223456888888876432211111122223333333211 11
Q ss_pred HHHhhhcCCEEEEecCccCccccCccc----cccCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHhh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLE----DFATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILES 400 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~----~~~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~~ 400 (643)
...-+.+||+||++|+.........+. .....+|+|.||++.....+.-...+.|. .|...+|..+...+++
T Consensus 218 ~~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlpirPGTD~ALalam~~vIi~e 295 (912)
T TIGR03479 218 TSDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLPVRVGTDAALALGMVQVIIDE 295 (912)
T ss_pred chhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeecCCCCCcHHHHHHHHHHHHHHc
Confidence 122367999999999986432211111 12245799999999887765333334444 5776666655555543
No 295
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=88.40 E-value=0.8 Score=52.95 Aligned_cols=115 Identities=14% Similarity=0.093 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhCC---------------Cc--EEEEcCCc-h-hhHHHHHHHHHHhCCceeecCCCCCCCCC---CC
Q 040733 257 DELALRQTLKLIVESK---------------NP--VLCVGGGC-L-NSSEELRKFVGLTGIPVTCTTMGLGLFPC---TD 314 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak---------------rP--vIl~G~g~-~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~---~h 314 (643)
-+++++.+++.|++.+ +| +.+.|++. . +..-.+.+|+..+|.+.+... ++-+... ..
T Consensus 73 WdeAld~iA~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~-ar~C~~~tv~~l 151 (649)
T cd02752 73 WDEALDEIARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQ-ARIUHSPTVAGL 151 (649)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCC-cchhhhHHHHHH
Confidence 4678888888887643 33 44455433 2 344568899999998765432 2111000 00
Q ss_pred CCcccccCCCCcHHHHHhhhcCCEEEEecCccCcccc---Cccc-cccC-CceEEEEcCCcccccC
Q 040733 315 ELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT---SKLE-DFAT-RAKIVHIDIDSNEIGK 375 (643)
Q Consensus 315 pl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~-~~~iI~Id~d~~~i~~ 375 (643)
...+|. |..... -.-++++|+||++|+...+... ..+. .... .+|+|+||+.......
T Consensus 152 ~~~~G~-ga~tns--~~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~ 214 (649)
T cd02752 152 ANTFGR-GAMTNS--WNDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAA 214 (649)
T ss_pred HhhcCC-CCCCCC--HHHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhH
Confidence 111121 111111 1236899999999998643221 1111 1122 5799999988876654
No 296
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=88.29 E-value=1.6 Score=50.00 Aligned_cols=107 Identities=18% Similarity=0.127 Sum_probs=73.2
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.+|++ .--|+...++.+.+|...+.|+++|.-.-....+ + ..
T Consensus 50 A~~~Adgyar~t-gk~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G~~~~~~~-----------~--~~-------- 107 (575)
T TIGR02720 50 GALAAAADAKLT-GKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGM-----------N--MD-------- 107 (575)
T ss_pred HHHHHHHHHHhh-CCceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccC-----------C--CC--------
Confidence 455667777665 45656554 4446666789999999999999998864332110 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHH----HHhCCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQL----MLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~----al~~~gp~lIeV~v~~~ 617 (643)
.....|-..+++.+-....+|.+++++...+++ |....||+.|+++.|-.
T Consensus 108 ~~q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 161 (575)
T TIGR02720 108 TFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDFG 161 (575)
T ss_pred CcceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcchh
Confidence 123457788888888888899988776555555 44567999999998753
No 297
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=87.91 E-value=1.6 Score=48.05 Aligned_cols=117 Identities=14% Similarity=0.045 Sum_probs=75.4
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-.+ +.-+|-|.+.+. +++.+|++- -.|....++.|.+|...+.|+++|.-.-... ..+
T Consensus 39 i~~v~~~hE~~---A~~mAdgyar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~---------~~~ 105 (432)
T TIGR00173 39 LRVHVHIDERS---AGFFALGLAKAS-GRPVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPE---------LRG 105 (432)
T ss_pred cEEEEecCCcc---HHHHHHHHHhcc-CCCEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHH---------HhC
Confidence 45555433222 455777777766 456555554 4455666899999999999999987543210 000
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhH------H----HHHHHHHHh-CCCcEEEEEEeCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD------V----RAAIQLMLE-TPGPYLLDVMVSY 616 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~e------L----~~al~~al~-~~gp~lIeV~v~~ 616 (643)
. . .....|...+.+.+-....+|+++++ + ++|++.+.. .+||+.|+|+.|-
T Consensus 106 ~---~---------~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 106 C---G---------ANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred C---C---------CCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 0 0 02346778888888888888888766 4 445555554 5699999999775
No 298
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=87.91 E-value=1.6 Score=50.16 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=74.7
Q ss_pred chHHHHHHHHhCCCCeEEEEecC-ccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGD-GSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GD-Gsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+..+ +++.++++-= -|+...++.|.+|...+.|+++|.-.=..+.+ +..
T Consensus 63 A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~------------------~~~--- 120 (585)
T CHL00099 63 AAHAADGYARST-GKVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFI------------------GTD--- 120 (585)
T ss_pred HHHHHHHHHHhc-CCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCcccc------------------CCC---
Confidence 566778887776 5666665543 35555689999999999999998854221110 000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-....+|++++++.+.+++|+. .+||+.|+++.|-
T Consensus 121 ~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 121 AFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred CccccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 023457777888887788899999999888888764 3589999999874
No 299
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=87.88 E-value=4.5 Score=44.84 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHH-HHHH--------HhCCCeEEEEEeCCCchh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQEL-AAIK--------AENIPVKILLINNQYLGM 543 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL-~Ta~--------~~~lpv~ivV~NN~~~g~ 543 (643)
|.+|+..+- +=...++.|.|++++. -|++|.+.. ..|.|- +.-| ..+. +.++|++++. -|+++..
T Consensus 188 p~R~id~gI--aEq~~vg~AaGlA~~G-~rPiv~~~~-~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g-~~G~~~~ 262 (464)
T PRK11892 188 ARRVIDTPI--TEHGFAGIGVGAAFAG-LKPIVEFMT-FNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRG-PNGAAAR 262 (464)
T ss_pred ccceeecCc--cHHHHHHHHHHHHhCC-CEEEEEEeh-HHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEe-cCCCCCC
Confidence 667776432 1122577788888763 355554321 112221 1122 2233 6789988764 3444221
Q ss_pred hHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEE
Q 040733 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 544 ~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lI 610 (643)
.|. ++..++..+.+.+ |+..+.-.+..|++..|+.+++.++|++|
T Consensus 263 -----------------~G~-----hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ai~~~~Pv~i 308 (464)
T PRK11892 263 -----------------VAA-----QHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAAIRDPNPVIF 308 (464)
T ss_pred -----------------CCC-----ccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHHHhhCCCcEEE
Confidence 111 2445666776666 88888889999999999999998899986
No 300
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=87.66 E-value=3.2 Score=47.58 Aligned_cols=105 Identities=21% Similarity=0.326 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc--------cCCC----CCCccCHHH
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL--------LGTD----AFQEIPVVE 185 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~--------~g~~----~~Q~~d~~~ 185 (643)
+.-+|.|.+.+. +++.+|++-=| ++.-.+..+..|...++|+++|.-+..... .+.. .++..|...
T Consensus 413 ~~paAiGa~la~p~~~vv~i~GDG-sf~~~~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~df~~ 491 (578)
T PRK06546 413 ALPHAIGAQLADPGRQVISMSGDG-GLSMLLGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDFGTDHPPVDYAA 491 (578)
T ss_pred hhHHHHHHHHhCCCCcEEEEEcCc-hHhhhHHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcccccCCCCCHHH
Confidence 344888888876 46666654333 333345789999999999999986443211 1100 135678888
Q ss_pred HhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 186 VTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 186 ~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+.+.+-...+++.+++++...+++|+. ..||+.|++..|
T Consensus 492 lA~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIev~~~ 530 (578)
T PRK06546 492 IAAALGIHAVRVEDPKDVRGALREAFA-----HPGPALVDVVTD 530 (578)
T ss_pred HHHHCCCeeEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeC
Confidence 888887778899998888888888764 359999999775
No 301
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=87.47 E-value=22 Score=34.34 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhH-HHHHHHHHhhhCCC-CEEEEeCCCcccc-cCC-C-CCCccCHHHHhhccc-
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVT-NIMTGLMDAYSDSI-PILAITGQVSQKL-LGT-D-AFQEIPVVEVTRYMT- 191 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~-N~~~gl~~A~~~~v-PvlvItg~~~~~~-~g~-~-~~Q~~d~~~~~~~~t- 191 (643)
+.-+|.|.+.+. +++.+|++ |=|.. -.+..|..+...+. |+++|.-+..... .+. . .....|...+.+.+-
T Consensus 53 ~lpaAiGaala~p~~~Vv~i~--GDG~f~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d~~~~A~a~G~ 130 (188)
T cd03371 53 ASQIALGIALARPDRKVVCID--GDGAALMHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACGY 130 (188)
T ss_pred HHHHHHHHHHhCCCCcEEEEe--CCcHHHhhccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCCHHHHHHHcCC
Confidence 556778877665 46666554 43333 34567888877776 6777765443221 111 0 112357777777763
Q ss_pred eeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 192 k~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
++.+++.+++++.+.+++|+. ..||+.|++..|
T Consensus 131 ~~~~~v~~~~el~~al~~a~~-----~~~p~lIev~~~ 163 (188)
T cd03371 131 RAVYEVPSLEELVAALAKALA-----ADGPAFIEVKVR 163 (188)
T ss_pred ceEEecCCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 344578888888777777753 248999998775
No 302
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=86.91 E-value=3.3 Score=46.98 Aligned_cols=105 Identities=17% Similarity=0.116 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhCCcEEEEEccchhhHH-HHHHHHHhhhCCCCEEEEeCCCccccc-----C---CCCCCccCHHHHhhc
Q 040733 119 GIFAAEGYARSSGTPGVCLVSSGPGVTN-IMTGLMDAYSDSIPILAITGQVSQKLL-----G---TDAFQEIPVVEVTRY 189 (643)
Q Consensus 119 A~~~A~Gyar~sg~~gv~~~t~GpG~~N-~~~gl~~A~~~~vPvlvItg~~~~~~~-----g---~~~~Q~~d~~~~~~~ 189 (643)
+.-+|.|.+.+.++..|++ .|=|... .+.-|..|...++|+++|.-......+ . ...+...|...+.+.
T Consensus 408 glpaaiGa~lA~~~r~v~i--~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a 485 (535)
T TIGR03394 408 GVPAGIGAQCTSGKRILTL--VGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAG 485 (535)
T ss_pred HHHHHHHHHhCCCCCeEEE--EeChHHHhHHHHHHHHHHcCCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHHH
Confidence 3356677777765555664 3544444 458999999999999999865543211 0 112334577888888
Q ss_pred cceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 190 ~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+-....++.+++++...+++|+.. ..+|+.|++..|
T Consensus 486 ~G~~~~~v~~~~eL~~al~~a~~~----~~~p~lIev~i~ 521 (535)
T TIGR03394 486 MGGDGVRVRTRAELAAALDKAFAT----RGRFQLIEAMLP 521 (535)
T ss_pred cCCCceEeCCHHHHHHHHHHHHhc----CCCeEEEEEECC
Confidence 888889999999998888888752 235889999775
No 303
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=86.77 E-value=3 Score=43.10 Aligned_cols=143 Identities=17% Similarity=0.092 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHCCCC---E-EEEccCCCcHHHHHHHhhCC-Ce--EEecCChhHHHHHHHHHHHHh-CCcEEEEEccchh
Q 040733 72 GADIIVEALERQGVT---T-VFAYPGGASIEIHQSLTRSN-IR--SILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPG 143 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~---~-vFg~PG~~~~~l~~al~~~~-i~--~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG 143 (643)
.-.+|.++|.+.|+. . +++=.|.+.. ... +. .....| ..|.-+|.|...+. +++.||++-=|-.
T Consensus 12 i~~~~~~a~~~l~~~p~d~iivsdiGc~~~-------~~~~l~~~~~~t~m-G~alPaAiGaklA~Pd~~VVai~GDG~f 83 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVVVVSGIGCSAK-------TPHYVNVNGFHGLH-GRALPVATGIKLANPHLKVIVVGGDGDL 83 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCcccc-------cCCeEecCCccccc-ccHHHHHHHHHHHCCCCcEEEEeCchHH
Confidence 345788888888873 2 2222232220 111 11 112223 45677899988886 4556655443333
Q ss_pred hHHHHHHHHHhhhCCCCEEEEeCCCcc-----------cccCC-------CCC---CccCHHHHhhccceeeeE-eCCcC
Q 040733 144 VTNIMTGLMDAYSDSIPILAITGQVSQ-----------KLLGT-------DAF---QEIPVVEVTRYMTKHNYL-VLDVD 201 (643)
Q Consensus 144 ~~N~~~gl~~A~~~~vPvlvItg~~~~-----------~~~g~-------~~~---Q~~d~~~~~~~~tk~~~~-v~~~~ 201 (643)
..-.+..+..|...++||++|.-+... ...|. +.. ...+...+...+...... +.+++
T Consensus 84 ~~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~~ 163 (287)
T TIGR02177 84 YGIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDVA 163 (287)
T ss_pred HhccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCHH
Confidence 334567799999999999999753321 11110 000 122344555555433333 46677
Q ss_pred cHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 202 DIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 202 ~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++.+.|++|+. .+||++|++.
T Consensus 164 eL~~ai~~Al~-----~~GpslIeV~ 184 (287)
T TIGR02177 164 HLKEIIKEAIN-----HKGYALVDIL 184 (287)
T ss_pred HHHHHHHHHHh-----CCCCEEEEEe
Confidence 77777777664 3589999884
No 304
>PRK06154 hypothetical protein; Provisional
Probab=86.66 E-value=2.8 Score=47.86 Aligned_cols=157 Identities=13% Similarity=0.007 Sum_probs=95.6
Q ss_pred CcHHHHHHHHHHHC-C-CCEEEEcc-CCCcHHHHHHHhhCC-CeEEecCC---hhHHHHHHHHHHHHh-CCcEEEEEccc
Q 040733 70 RKGADIIVEALERQ-G-VTTVFAYP-GGASIEIHQSLTRSN-IRSILPRH---EQGGIFAAEGYARSS-GTPGVCLVSSG 141 (643)
Q Consensus 70 ~~~a~~lv~~L~~~-G-V~~vFg~P-G~~~~~l~~al~~~~-i~~i~~~h---E~~A~~~A~Gyar~s-g~~gv~~~t~G 141 (643)
++-.. +++.|.+. . =+.++..= |.+.......+.-.. -+++.... =.-+.-+|.|.+.+. +|+.||++-=|
T Consensus 381 l~p~~-~~~~l~~~l~~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG 459 (565)
T PRK06154 381 INPYR-VVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDA 459 (565)
T ss_pred cCHHH-HHHHHHHhcCCCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcch
Confidence 44433 44445443 1 14555433 444444444443333 45554322 122567788888776 57777665333
Q ss_pred hhhHHHHHHHHHhhhCCCCEEEEeCCCcccc-c-------C-CC--CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHH
Q 040733 142 PGVTNIMTGLMDAYSDSIPILAITGQVSQKL-L-------G-TD--AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEA 210 (643)
Q Consensus 142 pG~~N~~~gl~~A~~~~vPvlvItg~~~~~~-~-------g-~~--~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A 210 (643)
|+.=....|..|...++|+++|.-...... . + .. .....|...+.+.+-...+++++++++...+++|
T Consensus 460 -~f~m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~~~~el~~al~~a 538 (565)
T PRK06154 460 -AFGMTGMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIARALGGYGERVEDPEMLVPALLRA 538 (565)
T ss_pred -HHhccHHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHH
Confidence 333344789999999999999986554221 0 0 00 0012477888888888899999999999999998
Q ss_pred HHHhhcCCCCeEEEEcccch
Q 040733 211 FFIATSGRPGPVLIDIPVDV 230 (643)
Q Consensus 211 ~~~A~s~~~GPV~i~iP~Dv 230 (643)
+.... ..+|+.|++..|-
T Consensus 539 ~~~~~--~~~p~lIev~v~~ 556 (565)
T PRK06154 539 LRKVK--EGTPALLEVITSE 556 (565)
T ss_pred Hhhcc--CCCeEEEEEEeCh
Confidence 87432 2479999998764
No 305
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=86.45 E-value=4 Score=42.23 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=83.3
Q ss_pred cHHHHHHHHHHHCCCC---EEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 040733 71 KGADIIVEALERQGVT---TVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTN 146 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~---~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N 146 (643)
..-.+|.++|.++|++ .++..-.+.+.-+. .... ...+...| .-+.-+|.|.+.+. .++.||++-=|-++.-
T Consensus 27 ~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~-~~~~--~~~~~g~m-G~alpaAiGaklA~Pd~~VV~i~GDG~~f~m 102 (286)
T PRK11867 27 SILAALQRALAELGLDPENVAVVSGIGCSGRLP-GYIN--TYGFHTIH-GRALAIATGLKLANPDLTVIVVTGDGDALAI 102 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCccccccC-cccc--ccchhhhh-hcHHHHHHHHHHhCCCCcEEEEeCccHHHhC
Confidence 4677888889888864 23322222221111 0101 11121233 44556888888876 4556665544444666
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCccc-----------ccCC----CCCC----ccCHHHHhhccceeee---EeCCcCcHH
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQK-----------LLGT----DAFQ----EIPVVEVTRYMTKHNY---LVLDVDDIP 204 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~-----------~~g~----~~~Q----~~d~~~~~~~~tk~~~---~v~~~~~i~ 204 (643)
.++.+..|...++||++|.-+.... ..|. ..+. ..|...+...+-.... .+.+++++.
T Consensus 103 g~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~ 182 (286)
T PRK11867 103 GGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLT 182 (286)
T ss_pred CHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHH
Confidence 6788999999999999997533211 1110 0010 1456666655432222 245666777
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 205 RIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 205 ~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..|++|++ .+||++|++-.+
T Consensus 183 ~al~~Al~-----~~Gp~lIev~~~ 202 (286)
T PRK11867 183 ELIKAAIN-----HKGFSFVEILQP 202 (286)
T ss_pred HHHHHHHh-----CCCCEEEEEeCC
Confidence 77776654 359999998543
No 306
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=86.10 E-value=10 Score=43.99 Aligned_cols=150 Identities=15% Similarity=0.128 Sum_probs=90.5
Q ss_pred CCcHHHHHHHHHHHCCC--CEEEEc----cCCCcHHHHHHHhh-CCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 040733 69 PRKGADIIVEALERQGV--TTVFAY----PGGASIEIHQSLTR-SNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSS 140 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV--~~vFg~----PG~~~~~l~~al~~-~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~ 140 (643)
.++..+++.++|.+..- +.|+++ +++.. ++.+.+ .+=|++ ...-|++++.+|.|.|...-+|-|++-
T Consensus 380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtg---l~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iy-- 454 (701)
T PLN02225 380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDAS---LITFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIP-- 454 (701)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCccc---HHHHHHHccccccccCccHHHHHHHHHHHHHCCCEEEEEee--
Confidence 34677777777766543 445555 33221 233333 233444 567899999999999986667666543
Q ss_pred chhhHHHHHHH-HHhhhCCCCEEEEeCCCcccccCCC--CCCccCHHHHhhccceeeeE-eCCcCcHHHHHHHHHHHhhc
Q 040733 141 GPGVTNIMTGL-MDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVVEVTRYMTKHNYL-VLDVDDIPRIIKEAFFIATS 216 (643)
Q Consensus 141 GpG~~N~~~gl-~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~A~s 216 (643)
.+=+.-++--| .++...+.||.++. ++.. ..|.+ .+|.+....+++.+...... ..+++++..+++.|+.
T Consensus 455 stFlqRAyDQI~~Dval~~lpV~~vi-d~aG-lvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~---- 528 (701)
T PLN02225 455 SAFLQRAYDQVVHDVDRQRKAVRFVI-TSAG-LVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAY---- 528 (701)
T ss_pred hhHHHHHHHHHHHHHHhhcCCceEEE-ECCc-cCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----
Confidence 23222333332 33456677877664 3332 23322 36767777899998765543 4566677777766653
Q ss_pred CCCCeEEEEcccc
Q 040733 217 GRPGPVLIDIPVD 229 (643)
Q Consensus 217 ~~~GPV~i~iP~D 229 (643)
...|||+|..|..
T Consensus 529 ~~~gPv~IR~pRg 541 (701)
T PLN02225 529 VTDRPVCFRFPRG 541 (701)
T ss_pred cCCCCEEEEeccc
Confidence 2358999999986
No 307
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=86.03 E-value=3.5 Score=47.55 Aligned_cols=115 Identities=19% Similarity=0.137 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhc
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNE 335 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~ 335 (643)
-+++++.+++.|++.++..++.|.... +....+.+|++.+|.+-+.....-..... .+...+. ..|.. ..-+.+
T Consensus 288 WdeAl~~ia~kL~~i~~va~~~~~~~~~e~~~~~~~~~~~lGt~~~~~~~~~~~~~~-~~~~~~~--~~g~~--~~di~~ 362 (603)
T TIGR01973 288 WAEALAIAAEKLKASSRIGGIAGPRSSLEELFALKKLVRKLGSENFDLRIRNYEFES-ADLRANY--LFNTT--LADIEE 362 (603)
T ss_pred HHHHHHHHHHHHhccCcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccccccccc-chhhccc--ccCCC--HHHHHh
Confidence 478889999999888677777666443 34456889999988764332111000000 0111111 11111 234689
Q ss_pred CCEEEEecCccCcccc---Cccc-cccCC-ceEEEEcCCcccccCC
Q 040733 336 CDLLLAAGVRFNERMT---SKLE-DFATR-AKIVHIDIDSNEIGKV 376 (643)
Q Consensus 336 aDlvL~vG~~~~~~~t---~~~~-~~~~~-~~iI~Id~d~~~i~~~ 376 (643)
+|+||++|+.+.+... ..+. ....+ +|+|.||+........
T Consensus 363 ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~ 408 (603)
T TIGR01973 363 ADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYP 408 (603)
T ss_pred CCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhh
Confidence 9999999998744221 1111 11223 7999999877666543
No 308
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=85.96 E-value=4.5 Score=44.97 Aligned_cols=138 Identities=18% Similarity=0.065 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHh------CCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHH
Q 040733 257 DELALRQTLKLIVE------SKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~------AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~ 328 (643)
-+++++.+++.|++ .+.-.++.|.+.. .......+|+..+|.+-+......+..+......+|.. ....
T Consensus 87 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~G~~---~~~~ 163 (461)
T cd02750 87 WDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGEQ---TDVP 163 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHHHHhcCCccCCCCCcccchhhhhhhhcCCC---CCCC
Confidence 46778888877763 2222333343322 23344678999889776543222111222233333321 1111
Q ss_pred HHHhhhcCCEEEEecCccCccccC---ccccc-cCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTS---KLEDF-ATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMIL 398 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~---~~~~~-~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l 398 (643)
..+-+.++|+||++|+...+.... .+... ...+|+|.||+......+.-...+.+. .|...++ +|...+
T Consensus 164 ~~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~i~PGtD~al~l-al~~~i 238 (461)
T cd02750 164 ESADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVPIKPGTDAALAL-AMAHVI 238 (461)
T ss_pred ChhHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEeccCCCcHHHHHH-HHHHHH
Confidence 123468999999999986432211 11111 245689999988877655322223333 3554444 444333
No 309
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=85.28 E-value=7.2 Score=46.14 Aligned_cols=113 Identities=14% Similarity=0.042 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHhC--CCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCC--CCCcccccCCCCcHHHH
Q 040733 256 PDELALRQTLKLIVES--KNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCT--DELCLRMVGMFGTVYAN 330 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~A--krPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~--hpl~lG~~g~~~~~~~~ 330 (643)
.-+++++.+++.|++. ++..++.++... ...-....|+..+|.+-+.+......-+.. ....+|.. .++.. .
T Consensus 117 SWdEAl~~IA~kL~~~~p~~i~~y~sg~~s~e~~~~~~~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~--~~t~~-~ 193 (743)
T TIGR01701 117 SWDDAYQEIAAKLNSLDPKQVAFYTSGRTSNEAAYLYQLFARSLGSNNLPDCSNMCHEPSSVALKRSIGIG--KGSVN-L 193 (743)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHHHhCCCCcCCCcccccchhhHHHHHhcCCC--CCCCC-H
Confidence 3467888888888875 455566655443 333456788888887654321100000000 01112211 11111 2
Q ss_pred HhhhcCCEEEEecCccCccccC---ccc-cccCCceEEEEcCCcc
Q 040733 331 YAVNECDLLLAAGVRFNERMTS---KLE-DFATRAKIVHIDIDSN 371 (643)
Q Consensus 331 ~~l~~aDlvL~vG~~~~~~~t~---~~~-~~~~~~~iI~Id~d~~ 371 (643)
+-+.++|+||++|......... .+. .....+|+|.||+...
T Consensus 194 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~ 238 (743)
T TIGR01701 194 EDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRE 238 (743)
T ss_pred hHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 2467999999999986533211 111 1224679999998654
No 310
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=85.20 E-value=13 Score=39.75 Aligned_cols=150 Identities=18% Similarity=0.160 Sum_probs=86.1
Q ss_pred CcHHHHHHHHHHHCCC--CEEEEccCCC-----cHHHHHHH-hhCC-CeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEc
Q 040733 70 RKGADIIVEALERQGV--TTVFAYPGGA-----SIEIHQSL-TRSN-IRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVS 139 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV--~~vFg~PG~~-----~~~l~~al-~~~~-i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t 139 (643)
++..+++.++|.+..- +.++.+..+- .+...+.| .+.+ =|++ ...-|++++.+|.|.|....+|-|++..
T Consensus 27 ~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~~ 106 (356)
T PLN02683 27 MTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFMT 106 (356)
T ss_pred cHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEEeh
Confidence 4566667666666643 3466665432 22222222 2332 5666 5679999999999999987787766532
Q ss_pred c---chhhHHHHHHHHHhh--h---CCCCEEEEeCCCcccccCCC-CCCccCHHHHhhccceeee-EeCCcCcHHHHHHH
Q 040733 140 S---GPGVTNIMTGLMDAY--S---DSIPILAITGQVSQKLLGTD-AFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKE 209 (643)
Q Consensus 140 ~---GpG~~N~~~gl~~A~--~---~~vPvlvItg~~~~~~~g~~-~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~ 209 (643)
+ ..+.-.+.+-++--. . -+.||+++... .. ..|.+ .+|..+ ..+++.+-.+.. ...++.++..+++.
T Consensus 107 ~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~-~~g~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~~ 183 (356)
T PLN02683 107 FNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GA-AAGVGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLKA 183 (356)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CC-CCCCCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 1 223333333332211 1 12899988633 21 12222 344444 689998875443 35566777777766
Q ss_pred HHHHhhcCCCCeEEEEcc
Q 040733 210 AFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 210 A~~~A~s~~~GPV~i~iP 227 (643)
|+. . +|||+|-.+
T Consensus 184 a~~----~-~gPv~ir~~ 196 (356)
T PLN02683 184 AIR----D-PDPVVFLEN 196 (356)
T ss_pred HHh----C-CCcEEEEEe
Confidence 653 2 489999754
No 311
>PLN02573 pyruvate decarboxylase
Probab=85.13 E-value=5.1 Score=45.96 Aligned_cols=107 Identities=8% Similarity=0.010 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc-----cCC--CCCCccCHHHHhhcc
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL-----LGT--DAFQEIPVVEVTRYM 190 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~-----~g~--~~~Q~~d~~~~~~~~ 190 (643)
+.-+|.|++.+. +|+.||++- -=|+.=.+.-|..|...++|+++|.-+..... .+. +..+..|...+.+.+
T Consensus 433 glpaaiGa~lA~p~r~vv~i~G-DG~f~m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~~~d~~~lA~a~ 511 (578)
T PLN02573 433 SVGATLGYAQAAPDKRVIACIG-DGSFQVTAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 511 (578)
T ss_pred hhhHHHHHHHhCCCCceEEEEe-ccHHHhHHHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccCCCCHHHHHHHh
Confidence 446788888776 466666543 23444445899999999999999986554321 100 112345777787776
Q ss_pred c-----eeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 191 T-----KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 191 t-----k~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
- .+..++.+++++...+++|+... +.||..|++..|
T Consensus 512 G~~~g~~~~~~V~~~~eL~~al~~a~~~~---~~~p~lieV~v~ 552 (578)
T PLN02573 512 HNGEGKCWTAKVRTEEELIEAIATATGEK---KDCLCFIEVIVH 552 (578)
T ss_pred cCcCCceeEEEecCHHHHHHHHHHHHhhC---CCCcEEEEEEcC
Confidence 2 46789999999988888887532 358999999876
No 312
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=85.00 E-value=20 Score=41.29 Aligned_cols=118 Identities=13% Similarity=0.055 Sum_probs=77.6
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+|+....-. .+.-+|-|.+.+. +++.+|++- --|....++.|.+|...+.|+++|.-+=... ..+
T Consensus 43 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gi~~A~~d~vPvl~I~G~~~~~---------~~~ 109 (597)
T PRK08273 43 PEFVQARHEE---MAAFMAVAHAKFT-GEVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARA---------ALG 109 (597)
T ss_pred CeEEEeccHH---HHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCchh---------hcC
Confidence 4555543321 2456777777776 456666554 3455556899999999999999888421100 000
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCC-CCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACG-IPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSYQ 617 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G-~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~~ 617 (643)
. . .....|...+.+.+- ....++++++++.+.+++|+ ...||+.|+++.|-.
T Consensus 110 ~----~--------~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv~ 166 (597)
T PRK08273 110 G----H--------YQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDVQ 166 (597)
T ss_pred C----C--------CCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcchh
Confidence 0 0 023467778888887 67889999988777776655 356899999998754
No 313
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=84.89 E-value=3.2 Score=46.68 Aligned_cols=140 Identities=14% Similarity=0.057 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhCC------CcEEEEcCCchhh--HHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHH
Q 040733 257 DELALRQTLKLIVESK------NPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak------rPvIl~G~g~~~~--~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~ 328 (643)
-+++++.+++.|++.+ +..++.+.|.... ...+.+|.+.+|.+-+......+..-..+....|. ... .
T Consensus 75 WdeAl~~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~~~~~~~~~~Gs~~~~~~~c~~~~~~~~~~~~G~---~~~-~ 150 (501)
T cd02766 75 WDEALDTIAAKLKEIKAEYGPESILPYSYAGTMGLLQRAARGRFFHALGASELRGTICSGAGIEAQKYDFGA---SLG-N 150 (501)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcEEEEecccCCccccchHHHHHHHHhCCCCCCCCCccHHHHHHHHHhhcCC---CCC-C
Confidence 5678888888887643 3444444443321 11235788777766532100000000001111221 111 1
Q ss_pred HHHhhhcCCEEEEecCccCccccC---ccc-cccCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHhh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTS---KLE-DFATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILES 400 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~---~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~~ 400 (643)
..+-+.++|+||++|+...+.... .+. .....+|+|.||+......+.-...+.|. .|...++..+...++.
T Consensus 151 ~~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~i~PGtD~al~~al~~~ii~~ 228 (501)
T cd02766 151 DPEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQIRPGTDGALALGVAKVLFRE 228 (501)
T ss_pred CHHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeeccCCCcHHHHHHHHHHHHHHC
Confidence 123578999999999886432111 111 11246799999988877654322223333 5666655444444443
No 314
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=84.72 E-value=3.1 Score=47.50 Aligned_cols=142 Identities=16% Similarity=0.094 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHhC------CCcEEEEcCCch-hhHHHHHHHHHH-hCCceeecCCCCCCCCCCCCCcccccCCCCcHH
Q 040733 257 DELALRQTLKLIVES------KNPVLCVGGGCL-NSSEELRKFVGL-TGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A------krPvIl~G~g~~-~~~~~l~~lae~-lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~ 328 (643)
-+++++.+++.|++. ++..++.|+... .....+.+|+.. +|.+.+.+.. .-+....+.-+.-.+|......
T Consensus 72 WdeAl~~ia~kl~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~l~~~~~gs~~~~~~~-~~c~~~~~~~~~~~~G~~~~~~ 150 (565)
T cd02754 72 WDEALDLIAERFKAIQAEYGPDSVAFYGSGQLLTEEYYAANKLAKGGLGTNNIDTNS-RLCMASAVAGYKRSFGADGPPG 150 (565)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEecCCccHHHHHHHHHHHHHhCCCCcccCCC-cccchHHHHHHHhhccCCCCCC
Confidence 567788888888753 345555454332 223346667763 6766543211 0000000000000112111000
Q ss_pred HHHhhhcCCEEEEecCccCccccC---cccc-ccC--CceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTS---KLED-FAT--RAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~---~~~~-~~~--~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~ 399 (643)
...-+.++|+||++|+...+.... .+.. ... .+|+|.||+........-...+.|. .|...++..+...++
T Consensus 151 ~~~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~i~PGtD~al~la~~~~ii~ 229 (565)
T cd02754 151 SYDDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLPIRPGTDLALLNGLLHVLIE 229 (565)
T ss_pred CHHHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeCCCCCccHHHHHHHHHHHHH
Confidence 112367999999999987432211 1111 112 6799999988877654322223333 466555544433333
No 315
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=83.86 E-value=3 Score=45.72 Aligned_cols=128 Identities=15% Similarity=0.197 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCch--hhHHH---HHHHHHHhCCceeecCCCCCCCCCCCCCcccccC------------
Q 040733 260 ALRQTLKLIVESKNPVLCVGGGCL--NSSEE---LRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVG------------ 322 (643)
Q Consensus 260 ~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~---l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g------------ 322 (643)
..++++++|..|||.+|+-|+|-. .++.+ +.++.|+-|.-|--- =||-.--+-|
T Consensus 296 ~~~~~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGHMNVLLAEa~Vp 366 (463)
T PF02233_consen 296 SAEEVAEMLANAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFA---------IHPVAGRMPGHMNVLLAEANVP 366 (463)
T ss_dssp SHHHHHHHHHH-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEE---------E-TTSSSSTTHHHHHHHHCT--
T ss_pred CHHHHHHHHHhcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEE---------eccccCCCCCcceEEEEecCCC
Confidence 467888999999999999999865 45544 444555557666211 1333211112
Q ss_pred ---CCCcHHHHHhhhcCCEEEEecCccC-------cccc--Cccc---cccCCceEEEEcCCcc----cccC--C-CCCC
Q 040733 323 ---MFGTVYANYAVNECDLLLAAGVRFN-------ERMT--SKLE---DFATRAKIVHIDIDSN----EIGK--V-KLPD 380 (643)
Q Consensus 323 ---~~~~~~~~~~l~~aDlvL~vG~~~~-------~~~t--~~~~---~~~~~~~iI~Id~d~~----~i~~--~-~~~~ 380 (643)
..--+..|+-+.+.|++|++|..-. +..+ .+.. -| +.+++|.+..+-. -+++ . ++-+
T Consensus 367 Yd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~-~ak~Viv~Krsm~~Gyagv~NpLF~~~nt 445 (463)
T PF02233_consen 367 YDIVKEMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVW-KAKQVIVIKRSMSPGYAGVDNPLFYKDNT 445 (463)
T ss_dssp GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GG-GSSEEEEEESSS--TTTS-S-GGGGSTTE
T ss_pred HHHHhhhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchh-hcCeEEEEEcCCCCCCCCCCCcceecCCc
Confidence 1112455677889999999997521 0011 0111 11 1234555422111 1111 1 2234
Q ss_pred eeEecCHHHHHHHHHHH
Q 040733 381 VSICADAKLVFNRMNMI 397 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~ 397 (643)
.=+.||+++.+++|...
T Consensus 446 ~MlfGDAk~~~~~l~~~ 462 (463)
T PF02233_consen 446 RMLFGDAKKTLEELVAE 462 (463)
T ss_dssp EEEES-HHHHHHHHHHH
T ss_pred EEEeccHHHHHHHHHHh
Confidence 55679999999998754
No 316
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=83.86 E-value=5.1 Score=47.73 Aligned_cols=136 Identities=12% Similarity=0.005 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhC------CCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHH
Q 040733 257 DELALRQTLKLIVES------KNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYA 329 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A------krPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~ 329 (643)
.+++++.+++.|++. +...++.|.... .....+.+|++.+|.+.+........... .....|. +..+..
T Consensus 289 WdeAl~~ia~~L~~i~~~~G~~~i~~~~s~~~t~e~~~~~~~f~~~~Gt~n~~~~~~~~~~~~-~~~~~g~-~~~~~~-- 364 (776)
T PRK09129 289 WETALEYVAEGLKGIIEDHGADQIGALASPHSTLEELYLLQKLARGLGSGNIDHRLRQQDFRD-DAAAPGA-PWLGMP-- 364 (776)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccCCccccc-hhhhhcc-cccCCC--
Confidence 567888888888753 345556565444 34456889999999876532111000000 0000111 111221
Q ss_pred HHhhhcCCEEEEecCccCcccc---Cccc-cccCCceEEEEcCCcccccCCCCCCeeEe-cCHHHHHHHHHH
Q 040733 330 NYAVNECDLLLAAGVRFNERMT---SKLE-DFATRAKIVHIDIDSNEIGKVKLPDVSIC-ADAKLVFNRMNM 396 (643)
Q Consensus 330 ~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~-~D~~~~L~~L~~ 396 (643)
.+-+.++|+||++|+.+.+... ..+. ......|+|.||+...++.....+...+. +|...+|..|..
T Consensus 365 ~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~~~~~~~~~~~~p~~~~~~la~l~~ 436 (776)
T PRK09129 365 IAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDFLFPVAQRIIVAPSAWADALAGVAA 436 (776)
T ss_pred HHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCccccccccccCccCChHHHHHHHHHHHH
Confidence 2346899999999998643221 1111 11245689999876665432222222221 344444544443
No 317
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=83.74 E-value=2.9 Score=47.79 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=76.8
Q ss_pred CeEEecCCh---hHHHHHHHHHHHHhCCcEEEEEccchhhHH-HHHHHHHhhhCCCCEEEEeCCCcccc----c--CCC-
Q 040733 108 IRSILPRHE---QGGIFAAEGYARSSGTPGVCLVSSGPGVTN-IMTGLMDAYSDSIPILAITGQVSQKL----L--GTD- 176 (643)
Q Consensus 108 i~~i~~~hE---~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N-~~~gl~~A~~~~vPvlvItg~~~~~~----~--g~~- 176 (643)
.+++..+.- ..+.-+|.|++.+.+|+.+|++ |=|... .++.+..|..-++|+++|.-+..... + +++
T Consensus 416 ~~~~~~~g~~~~G~~lpaaiGaala~~~~vv~i~--GDGsf~~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~ 493 (568)
T PRK07449 416 YPVYSNRGASGIDGLLSTAAGVARASAKPTVALI--GDLSFLHDLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEE 493 (568)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEe--chHHhhcCcHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCc
Confidence 555554432 2256788999888778776654 443333 35889999999999999986544211 0 000
Q ss_pred --------CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 177 --------AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 177 --------~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.....|...+.+.+--..+++.+++++...+++|+. .+||+.|++..|
T Consensus 494 ~~~~~~~~~~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~~-----~~~p~lIev~id 549 (568)
T PRK07449 494 PVFERFFGTPHGVDFAHAAAMYGLEYHRPETWAELEEALADALP-----TPGLTVIEVKTN 549 (568)
T ss_pred chhhHhhcCCCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHhc-----CCCCEEEEEeCC
Confidence 112356677777776667888888888888887753 358999999775
No 318
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=83.71 E-value=11 Score=39.88 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=31.0
Q ss_pred HHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEE
Q 040733 574 MLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 574 ~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lI 610 (643)
|..+.+++ |+..+.-.++.|++.+++.+++.++|++|
T Consensus 133 ~ea~~r~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 170 (327)
T PRK09212 133 YAAWYSHIPGLKVVAPYFAADCKGLLKTAIRDPNPVIF 170 (327)
T ss_pred HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEE
Confidence 44666665 77888889999999999999988999988
No 319
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=83.31 E-value=5.4 Score=42.35 Aligned_cols=117 Identities=21% Similarity=0.112 Sum_probs=73.6
Q ss_pred CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCCC-CCCccC-
Q 040733 108 IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGTD-AFQEIP- 182 (643)
Q Consensus 108 i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~~-~~Q~~d- 182 (643)
...+....=--|+.+|.+......+..|+++..|=|++| ...++-=|..-+.|||++.=+.-. .++.. ..|...
T Consensus 134 ~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~y-AiSvp~~~q~~~~ 212 (358)
T COG1071 134 GSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQY-AISVPRSRQTAAE 212 (358)
T ss_pred CCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCc-eeecchhhcccch
Confidence 444555555566677777665554556999999999988 566777778889999999854322 22211 113211
Q ss_pred ---HHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 183 ---VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 183 ---~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+....-.+......=.++..+-++.++|...|+.+. ||+.|+.
T Consensus 213 ~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~-GPtLIE~ 258 (358)
T COG1071 213 IIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGE-GPTLIEA 258 (358)
T ss_pred hHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCC-CCEEEEE
Confidence 111111222222222355678889999999999887 9999986
No 320
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=82.63 E-value=7.1 Score=41.96 Aligned_cols=110 Identities=15% Similarity=0.038 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHhCC--CcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhh
Q 040733 257 DELALRQTLKLIVESK--NPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAV 333 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak--rPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l 333 (643)
.+++++.+++.|.+.+ +-.+++|..+. +..-.+.+|++.+|...+.+-......+..+... |.+.+..+ -.-+
T Consensus 71 W~eAl~~ia~~l~~~~~~~i~~i~g~~~t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~-~~~~~~~s---l~di 146 (366)
T cd02774 71 WKTAFKFLNKFILLKKFSKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDL-ENYLFNNS---LKNL 146 (366)
T ss_pred HHHHHHHHHHHHhhcCcccEEEEECCCCCHHHHHHHHHHHHHhCCCceeccccccccccccccc-cCCccCCC---HHHH
Confidence 4677888888886643 45666666554 5566788999999988776432211111111111 22222111 1247
Q ss_pred hcCCEEEEecCccCccc---cCccc-cc-cCCceEEEEcCCc
Q 040733 334 NECDLLLAAGVRFNERM---TSKLE-DF-ATRAKIVHIDIDS 370 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~---t~~~~-~~-~~~~~iI~Id~d~ 370 (643)
+++|+||++|+...+-. ..++. .+ ..+.+++.|++..
T Consensus 147 e~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 147 DKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred hhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 89999999999864321 11221 12 2356899887655
No 321
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=82.30 E-value=9 Score=44.12 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhH-HHHHHHHHhhhCCCCEEEEeCCCcccc-cCC------C------CCCccCH
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVT-NIMTGLMDAYSDSIPILAITGQVSQKL-LGT------D------AFQEIPV 183 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~-N~~~gl~~A~~~~vPvlvItg~~~~~~-~g~------~------~~Q~~d~ 183 (643)
+.-+|.|.+.+. .++.|+++- --++. +.+..|..|...++|+++|.-+..... .+. + .++.+|.
T Consensus 408 ~~~~AiGa~~a~p~~~Vv~i~G-DG~f~~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~ 486 (595)
T TIGR03336 408 SIGVASGLSKAGEKQRIVAFIG-DSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISI 486 (595)
T ss_pred hHHHHhhhhhcCCCCCEEEEec-cchhhhcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCH
Confidence 345777777765 455555432 33343 348999999999999999875543211 110 0 1234678
Q ss_pred HHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 184 VEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 184 ~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..+.+.+--...++.+++++.+ +..|++.+.. .+||..|.+..+
T Consensus 487 ~~ia~a~G~~~~~v~~~~~l~~-l~~al~~a~~-~~gp~li~v~~~ 530 (595)
T TIGR03336 487 EELCRASGVEFVEVVDPLNVKE-TIEVFKAALA-AEGVSVIIAKQP 530 (595)
T ss_pred HHHHHHcCCCEEEEeCcCCHHH-HHHHHHHHHh-cCCCEEEEEccc
Confidence 8888888767778888877532 3334444433 358999998664
No 322
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=82.23 E-value=10 Score=43.01 Aligned_cols=137 Identities=16% Similarity=0.102 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHhC------CCcEEEEcCCchh--h-HHHHHHHHHHhCCceeecCCCCCCCCCCCCCcc---cccCCC
Q 040733 257 DELALRQTLKLIVES------KNPVLCVGGGCLN--S-SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCL---RMVGMF 324 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A------krPvIl~G~g~~~--~-~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~l---G~~g~~ 324 (643)
-+++++.+++.|++. +...++.|.+... . ......|...+|.+-+.+. +.+.. .+... ..+|..
T Consensus 71 WdeAl~~ia~kl~~i~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~lG~~~~~~~---~~~~~-~~~~~~~~~~~G~~ 146 (539)
T cd02762 71 WDEAFDEIAERLRAIRARHGGDAVGVYGGNPQAHTHAGGAYSPALLKALGTSNYFSA---ATADQ-KPGHFWSGLMFGHP 146 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEecCcccccchHHHHHHHHHHHhCCCccccc---cchhh-hHHHHHHHHhcCCC
Confidence 467788888877643 3455555655432 1 1123466667776532210 11110 01001 112221
Q ss_pred CcHHHHHhhhcCCEEEEecCccCccccC---------ccc-cccCCceEEEEcCCcccccCCCCCCeeEe----cCHHHH
Q 040733 325 GTVYANYAVNECDLLLAAGVRFNERMTS---------KLE-DFATRAKIVHIDIDSNEIGKVKLPDVSIC----ADAKLV 390 (643)
Q Consensus 325 ~~~~~~~~l~~aDlvL~vG~~~~~~~t~---------~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D~~~~ 390 (643)
.... .+-+.++|+||++|+...+.... .+. .....+|+|.||+...+..+. +|..|. .|...+
T Consensus 147 ~~~~-~~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~--AD~~l~irPGtD~aL~ 223 (539)
T cd02762 147 GLHP-VPDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKL--ADEHLFVRPGTDAWLL 223 (539)
T ss_pred CCCC-chhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHh--cCEeeCcCCCcHHHHH
Confidence 1111 22468999999999886432110 111 112356899999888776653 444443 466555
Q ss_pred HHHHHHHHhh
Q 040733 391 FNRMNMILES 400 (643)
Q Consensus 391 L~~L~~~l~~ 400 (643)
+..+...++.
T Consensus 224 ~a~~~~ii~~ 233 (539)
T cd02762 224 AAMLAVLLAE 233 (539)
T ss_pred HHHHHHHHHC
Confidence 5444444443
No 323
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=81.62 E-value=20 Score=39.13 Aligned_cols=112 Identities=15% Similarity=0.072 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhCC------CcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHH
Q 040733 257 DELALRQTLKLIVESK------NPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYA 329 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak------rPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~ 329 (643)
-+++++.+++.|.+.+ .-.++.|.... +....+.+|++.+|.|.+........+ .+.......+..+..
T Consensus 71 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-- 146 (414)
T cd02772 71 WETALEYVAEGLSAIIKKHGADQIGALASPHSTLEELYLLQKLARGLGSDNIDHRLRQSDF--RDDAKASGAPWLGMP-- 146 (414)
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEEecCCCCcHHHHHHHHHHHHhCCCCccCccccCcc--chhhhhccCCCCCCc--
Confidence 5678888888887643 23344444333 445678899999998865432111000 000000001111221
Q ss_pred HHhhhcCCEEEEecCccCcccc---Cccc-cccCCceEEEEcCCccc
Q 040733 330 NYAVNECDLLLAAGVRFNERMT---SKLE-DFATRAKIVHIDIDSNE 372 (643)
Q Consensus 330 ~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~~~~iI~Id~d~~~ 372 (643)
.+-++++|+||++|+...+... ..+. ......|+|.||+-...
T Consensus 147 ~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 147 IAEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 2347889999999998643221 1111 11235689999875543
No 324
>PRK09939 putative oxidoreductase; Provisional
Probab=81.30 E-value=5.2 Score=47.25 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHhCCCc---EEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccc---cCC-CCcH
Q 040733 256 PDELALRQTLKLIVESKNP---VLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRM---VGM-FGTV 327 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrP---vIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~---~g~-~~~~ 327 (643)
.-+++++.+++.|++.+.| .++.++... +..-.+..|+..+|-+-+.+-. . +.. .+-..|. +|. .++.
T Consensus 126 SWdEAl~~Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~f~r~~Gtnn~~~~s-~--~C~-~~~~~~l~~~~G~g~~t~ 201 (759)
T PRK09939 126 SWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCS-N--MCH-EPTSVGLAASIGVGKGTV 201 (759)
T ss_pred cHHHHHHHHHHHHHhhcCCCeEEEEeeCCchHHHHHHHHHHHHHhCCcccCCCC-C--CCc-hHHHHHHHHhcCCCCCCC
Confidence 3578888888888876555 444444333 3334567788888876542211 1 100 0111111 121 1121
Q ss_pred HHHHhhhcCCEEEEecCccCcccc---Cccc-cccCCceEEEEcCCcc
Q 040733 328 YANYAVNECDLLLAAGVRFNERMT---SKLE-DFATRAKIVHIDIDSN 371 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~~~~iI~Id~d~~ 371 (643)
... -++++|+||++|+...+... ..+. .....+|+|.||+-..
T Consensus 202 ~l~-Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~ 248 (759)
T PRK09939 202 LLE-DFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQE 248 (759)
T ss_pred CHH-HHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 222 36899999999998643211 1111 1124579999998553
No 325
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=81.17 E-value=18 Score=38.63 Aligned_cols=37 Identities=11% Similarity=0.364 Sum_probs=31.1
Q ss_pred HHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEE
Q 040733 574 MLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 574 ~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lI 610 (643)
+..+.+++ |+..+...++.|++.+++.+++.++|++|
T Consensus 164 ~ea~lr~iPn~~V~~Psd~~e~~~~l~~a~~~~~P~~i 201 (355)
T PTZ00182 164 FEAYFAHVPGLKVVAPSDPEDAKGLLKAAIRDPNPVVF 201 (355)
T ss_pred HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEE
Confidence 34666665 77888889999999999999998999977
No 326
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=81.00 E-value=2.2 Score=41.86 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=37.6
Q ss_pred HHHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 328 YANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
.+.+.++++|++|++|+++.-.....+-. ....+++|.|+.++...+. ..++.+.+|
T Consensus 148 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~--~~d~~~~~~ 206 (206)
T cd01410 148 GAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDK--LADLVIHGD 206 (206)
T ss_pred HHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCc--cccEEEeCC
Confidence 34566789999999999986443333321 1235789999998876654 345665543
No 327
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=80.91 E-value=11 Score=38.58 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=86.0
Q ss_pred CcHHHHHHHHHHHCCC--CEEEEccC-C-CcHHHHHHHhhCCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 70 RKGADIIVEALERQGV--TTVFAYPG-G-ASIEIHQSLTRSNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV--~~vFg~PG-~-~~~~l~~al~~~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
.+..+.+.+.|.++|= +.+..+-- . .++.+..-..+.+=|++ ..--||..+.+|.|.|...-+|-|+ |.++=+
T Consensus 7 ~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~--tfa~F~ 84 (312)
T COG3958 7 ESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVS--TFAAFL 84 (312)
T ss_pred hHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceee--chHHHH
Confidence 3556677777776663 22333332 2 22222211122232344 4578999999999999888888765 445433
Q ss_pred H-HHHHHHHHh-hhCCCCEEEEeCCCccccc-CCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCe
Q 040733 145 T-NIMTGLMDA-YSDSIPILAITGQVSQKLL-GTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGP 221 (643)
Q Consensus 145 ~-N~~~gl~~A-~~~~vPvlvItg~~~~~~~-g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GP 221 (643)
+ -+.--|.++ .+++.||=++.....-..- .-..+|.++...++|-+.+... -.|.|.. ..+..+..+... .||
T Consensus 85 s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V--~~P~D~v-~~~~i~~~~~~~-~GP 160 (312)
T COG3958 85 SRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTV--IAPADAV-ETRAILDQIADY-KGP 160 (312)
T ss_pred HHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceE--EccCcHH-HHHHHHHHHHhc-CCC
Confidence 3 222222222 1445665555543332221 2235899999999999885443 3344433 444444444433 499
Q ss_pred EEEEcccc
Q 040733 222 VLIDIPVD 229 (643)
Q Consensus 222 V~i~iP~D 229 (643)
||+.+..+
T Consensus 161 ~Y~Rl~R~ 168 (312)
T COG3958 161 VYMRLGRG 168 (312)
T ss_pred EEEEecCC
Confidence 99999873
No 328
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=80.62 E-value=16 Score=39.04 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=80.9
Q ss_pred CCHHHH-HHHHHhcCCCCCeEEE--eCCChhHH--H-HHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEE
Q 040733 434 IPPQYA-IQILNELTDDEETIIS--TGVGQHQM--W-AIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVD 507 (643)
Q Consensus 434 i~~~~~-~~~L~~~l~~~d~iv~--~d~G~~~~--~-~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~ 507 (643)
++...+ .+.|.+.+.+++-+++ .|+|.... + ...++.-..|.+|+..+- +=...++.|.|.+++. -++++.
T Consensus 27 ~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GI--AEq~~vg~AaGlA~~G-~~P~v~ 103 (356)
T PLN02683 27 MTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPI--TEAGFTGIGVGAAYAG-LKPVVE 103 (356)
T ss_pred cHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECch--hHHHHHHHHHHHHHCC-CEEEEE
Confidence 444433 3466666543233333 56554211 1 112222223677776432 2233678888888764 355544
Q ss_pred EecCccccCC-HHHH-HHHHHhC--------CCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHH
Q 040733 508 IDGDGSFIMN-LQEL-AAIKAEN--------IPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKF 577 (643)
Q Consensus 508 i~GDGsf~m~-~~eL-~Ta~~~~--------lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~l 577 (643)
+.. ..|++- ...| ..+...+ +||+++..+ +++. +... + +...+ ..+
T Consensus 104 ~~~-~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~----------g~G~--t---------H~~~~-~a~ 159 (356)
T PLN02683 104 FMT-FNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAA----------GVGA--Q---------HSQCF-AAW 159 (356)
T ss_pred Eeh-hhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCC----------CCCC--c---------cccCH-HHH
Confidence 321 123332 2223 3344444 898877544 3211 1000 0 11223 455
Q ss_pred HhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 578 AEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 578 A~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
.+++ |+..+...+..|++..++.+++.++|++|-
T Consensus 160 lr~iPnl~V~~Pad~~e~~~~l~~a~~~~gPv~ir 194 (356)
T PLN02683 160 YSSVPGLKVLAPYSSEDARGLLKAAIRDPDPVVFL 194 (356)
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 5555 788888899999999999999888999884
No 329
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=80.45 E-value=11 Score=40.65 Aligned_cols=111 Identities=18% Similarity=0.115 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHhCC--CcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHh
Q 040733 256 PDELALRQTLKLIVESK--NPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYA 332 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~Ak--rPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~ 332 (643)
.-+++++.+++.|++.+ ...++.|.... +....+.+|++.+|.+-+.+.......+. .++.....+.. . .-
T Consensus 69 sWdeAl~~ia~~l~~~~~~si~~~~g~~~~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~----~~~~~~~~~~~-~-~d 142 (375)
T cd02773 69 TWEEALAAIAKALKGVKPDEIAAIAGDLADVESMVALKDLLNKLGSENLACEQDGPDLPA----DLRSNYLFNTT-I-AG 142 (375)
T ss_pred CHHHHHHHHHHHHhhcCcCcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccccccccc----ccccccccCCC-H-HH
Confidence 35788999999998875 56666665433 44556889999999876543221111111 11110011111 1 23
Q ss_pred hhcCCEEEEecCccCccc---cCcc-cccc-CCceEEEEcCCccc
Q 040733 333 VNECDLLLAAGVRFNERM---TSKL-EDFA-TRAKIVHIDIDSNE 372 (643)
Q Consensus 333 l~~aDlvL~vG~~~~~~~---t~~~-~~~~-~~~~iI~Id~d~~~ 372 (643)
++++|+||++|+...+-. .... ..+. ..+++|.||+....
T Consensus 143 i~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~ 187 (375)
T cd02773 143 IEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDL 187 (375)
T ss_pred HhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCcccc
Confidence 689999999999863221 1111 1222 35799999876543
No 330
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=80.09 E-value=7.2 Score=42.96 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=54.8
Q ss_pred CeEEE--EecCccccCC--HHHHHHHH---HhCCC-eEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCH
Q 040733 503 AIVVD--IDGDGSFIMN--LQELAAIK---AENIP-VKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDM 574 (643)
Q Consensus 503 ~~Vv~--i~GDGsf~m~--~~eL~Ta~---~~~lp-v~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~ 574 (643)
-.|++ +-||++|.=- .+|-.+.. ...+. -+.+|.||+- |.. +|.+..-...--
T Consensus 318 d~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQv-gfT------------------tp~~rGRSs~yc 378 (913)
T KOG0451|consen 318 DHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQV-GFT------------------TPGDRGRSSAYC 378 (913)
T ss_pred CceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccc-ccc------------------Ccccccccchhh
Confidence 34544 6699998642 44433332 22332 4566777763 211 111111122344
Q ss_pred HHHHhHCCCCEEEe--CChhHHHHHHHHHHh----CCCcEEEEEEe
Q 040733 575 LKFAEACGIPAARV--TKKKDVRAAIQLMLE----TPGPYLLDVMV 614 (643)
Q Consensus 575 ~~lA~a~G~~~~~V--~~~~eL~~al~~al~----~~gp~lIeV~v 614 (643)
+.+|++++++.+.| ++++|+..+-+-|++ -.+-++|++.+
T Consensus 379 sDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~C 424 (913)
T KOG0451|consen 379 SDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNC 424 (913)
T ss_pred hHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHH
Confidence 68899999998887 689999888777665 34566777655
No 331
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=79.35 E-value=21 Score=37.74 Aligned_cols=39 Identities=5% Similarity=0.249 Sum_probs=30.8
Q ss_pred CHHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 573 DMLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 573 d~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
.+..+.+.+ |+.-+...++.|++..++.+++.++|++|-
T Consensus 132 ~~ea~~~~iPgl~V~~Psd~~d~~~~l~~a~~~~~Pv~ir 171 (327)
T CHL00144 132 RLESYFQSVPGLQIVACSTPYNAKGLLKSAIRSNNPVIFF 171 (327)
T ss_pred cHHHHHhcCCCCEEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 344555554 667777789999999999999989999874
No 332
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=78.72 E-value=12 Score=38.13 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=56.8
Q ss_pred eEEEEecCccccCC--HH-H-HHHHHHhCCCeEEEEEeCC--CchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHH
Q 040733 504 IVVDIDGDGSFIMN--LQ-E-LAAIKAENIPVKILLINNQ--YLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKF 577 (643)
Q Consensus 504 ~Vv~i~GDGsf~m~--~~-e-L~Ta~~~~lpv~ivV~NN~--~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~l 577 (643)
+++.++-||.+.++ .. . +..+.+.++-+.+|+++|. +-+++...+ ..|. + ........+
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~-~~~~---------~-----~~~~~l~~Y 230 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKV-VSFK---------N-----DKSGVITPY 230 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccc-cccC---------C-----CCccHHHHH
Confidence 79999999996554 33 2 5666778999999999986 334432211 1111 0 111267888
Q ss_pred HhHCCCCEE-EeCChhHHHHHHHHHH
Q 040733 578 AEACGIPAA-RVTKKKDVRAAIQLML 602 (643)
Q Consensus 578 A~a~G~~~~-~V~~~~eL~~al~~al 602 (643)
.+.|+.+|+ .|++.++|...|..++
T Consensus 231 l~~fpfpYy~~~~~~~~lp~~l~~~l 256 (266)
T cd01460 231 LDEFPFPYYVIVRDLNQLPSVLSDAL 256 (266)
T ss_pred HhcCCCCeEEEecChhHhHHHHHHHH
Confidence 999999876 5689999888776655
No 333
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=78.60 E-value=4.9 Score=40.94 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=51.5
Q ss_pred HHHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 328 YANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
.+...-.+||++|++|+++--...+.+.. .....|++.|+.-+.. +...+++.|.++++.++..|-+.|.-
T Consensus 209 ~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~--hDk~A~l~Ihg~vd~Vm~~lm~~Lgv 281 (353)
T KOG1905|consen 209 RATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTP--HDKIANLKIHGKVDLVMASLMELLGV 281 (353)
T ss_pred HHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCc--ccchhheeehhhHHHHHHHHHHHhCC
Confidence 34566789999999999986544454432 1245578777765543 44578999999999999999887754
No 334
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=78.47 E-value=7.2 Score=44.35 Aligned_cols=89 Identities=20% Similarity=0.230 Sum_probs=58.8
Q ss_pred cccccchHHHHHHHH-----------hCCCCeEEEEecCccccC--CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHH
Q 040733 484 GSMGFGLPAAMGAAV-----------ANPGAIVVDIDGDGSFIM--NLQELAAIKAENIPVKILLINNQYLGMNVEYEDR 550 (643)
Q Consensus 484 g~mG~glpaAiGaal-----------A~p~~~Vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~ 550 (643)
++||.|.-.||=.+. ..++++|+|+.|||-.=- +...|.-|.+++|.-+|+|+|=|- |..
T Consensus 192 vSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNl-------QrL 264 (887)
T COG2609 192 VSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNL-------QRL 264 (887)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecch-------hhc
Confidence 567766666665443 135799999999997653 355688899999998999988652 221
Q ss_pred hhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC
Q 040733 551 YFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT 589 (643)
Q Consensus 551 ~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~ 589 (643)
. +.-.|+ ...--.|+.+.++.|...++|.
T Consensus 265 D------gpVrgn----gkiiqelE~~FrgAGW~Vikvi 293 (887)
T COG2609 265 D------GPVRGN----GKIIQELEGIFRGAGWNVIKVI 293 (887)
T ss_pred C------CcccCC----chhHHHHHHHhccCCceEEEEE
Confidence 1 000000 0122378899999999888773
No 335
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=78.43 E-value=1.7 Score=43.37 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=36.1
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccccc-CCceEEEEcCCcccccCCCCCCeeEec
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLEDFA-TRAKIVHIDIDSNEIGKVKLPDVSICA 385 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~-~~~~iI~Id~d~~~i~~~~~~~~~i~~ 385 (643)
+.+.++++|++|++|+++.-.....+-... .++++|.|+.++..++.. .++.+.+
T Consensus 165 ~~~~~~~~DlllviGTSl~v~p~~~l~~~~~~~~~~i~iN~~~~~~~~~--~~~~~~~ 220 (225)
T cd01411 165 AIQAIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLIAINKEPTQLDSP--ATLVIKD 220 (225)
T ss_pred HHHHHhcCCEEEEECcCCeehhHHHHHHHHhCCCeEEEECCCCCCCCcc--hhehhcc
Confidence 445678999999999987533322222222 367899999988876543 4555544
No 336
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=78.42 E-value=11 Score=42.97 Aligned_cols=103 Identities=10% Similarity=0.083 Sum_probs=67.6
Q ss_pred HHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc-----cCC-C---CCCccCHHHHhhcc
Q 040733 121 FAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL-----LGT-D---AFQEIPVVEVTRYM 190 (643)
Q Consensus 121 ~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~-----~g~-~---~~Q~~d~~~~~~~~ 190 (643)
-+|.|.+-+. +|+.+|++-= =|+.=.+.-|..|...++|+++|.-+..... ++. . .+...|...+.+.+
T Consensus 411 paaiGa~la~p~~~vv~i~GD-G~f~m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~ 489 (539)
T TIGR03393 411 PAAFGAQTACPNRRVILLIGD-GSAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQAL 489 (539)
T ss_pred HHHHHHHhcCCCCCeEEEEcC-cHHHhHHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHc
Confidence 4566666554 4666665432 3444445899999999999999986554321 111 1 12224666677666
Q ss_pred ce----eeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 191 TK----HNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 191 tk----~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
-. +.+++.+.+++...+++|+. ..||+.|++..|
T Consensus 490 G~~~~~~~~~v~~~~el~~al~~a~~-----~~~p~liev~i~ 527 (539)
T TIGR03393 490 SLDPQSECWRVSEAEQLADVLEKVAA-----HERLSLIEVVLP 527 (539)
T ss_pred CCCCccceEEeccHHHHHHHHHHHhc-----cCCeEEEEEEcC
Confidence 43 37899998888888888763 358999999875
No 337
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=78.31 E-value=4.7 Score=39.63 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=50.5
Q ss_pred hcCCEEEEecCccCccccCcccc-ccCCceEEEEcCCccc--ccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChh
Q 040733 334 NECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSNE--IGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFS 410 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~iI~Id~d~~~--i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~ 410 (643)
..+|++|++|+++.-.....+.. ....++-+-|+.+..- .+...+.|+.+.+|.....++|.+.|
T Consensus 211 ~~~dl~lV~GTSL~V~PFAsLpe~vp~~v~RlLiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelL------------ 278 (314)
T KOG2682|consen 211 LKVDLLLVMGTSLQVQPFASLPEKVPLSVPRLLINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELL------------ 278 (314)
T ss_pred cccceEEEeccceeeeecccchhhhhhcCceeEecccccCccccCcccccchhhccHHHHHHHHHHHh------------
Confidence 46899999999985433333322 2234455556555542 33444578999999999999998875
Q ss_pred HHHHHHHHHHH
Q 040733 411 AWREELHEQKK 421 (643)
Q Consensus 411 ~w~~~~~~~~~ 421 (643)
.|.++++++-.
T Consensus 279 GW~eele~lv~ 289 (314)
T KOG2682|consen 279 GWKEELEDLVR 289 (314)
T ss_pred CcHHHHHHHHH
Confidence 37777776543
No 338
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=78.13 E-value=1.2e+02 Score=34.57 Aligned_cols=150 Identities=17% Similarity=0.233 Sum_probs=90.4
Q ss_pred CcHHHHHHHHHHHCCCC--EEEEc----cCCCcHHHHHHHhhCCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 040733 70 RKGADIIVEALERQGVT--TVFAY----PGGASIEIHQSLTRSNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGP 142 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~--~vFg~----PG~~~~~l~~al~~~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~Gp 142 (643)
.+.++++.+.|.+..-+ .+.++ |++.-+.-+. .+.+=||+ ...-||.|+-+|.|.|...-||.|++-++=
T Consensus 316 ~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~--~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYSTF- 392 (627)
T COG1154 316 PSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFS--KKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYSTF- 392 (627)
T ss_pred CCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHH--HhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEEecHH-
Confidence 46888888888877643 34443 4443333222 12233444 567899999999999999999999876521
Q ss_pred hhHHHH-HHHHHhhhCCCCEEEEeCCCcccccCCC--CCCccCHHHHhhccceeeeE-eCCcCcHHHHHHHHHHHhhcCC
Q 040733 143 GVTNIM-TGLMDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVVEVTRYMTKHNYL-VLDVDDIPRIIKEAFFIATSGR 218 (643)
Q Consensus 143 G~~N~~-~gl~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~A~s~~ 218 (643)
.-=++ -=+.+-...+.||++..-... ..|.+ .+|-+=...+++.+...... ..+.+++.+++..|+. ..
T Consensus 393 -LQRAYDQliHDvaiqnLPV~faIDRAG--ivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~----~~ 465 (627)
T COG1154 393 -LQRAYDQLIHDVAIQNLPVTFAIDRAG--IVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALA----QD 465 (627)
T ss_pred -HHHHHHHHHHHHHhccCCeEEEEecCc--ccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHh----cC
Confidence 11122 234566678999998863221 12222 34544445677777643332 2344455555555554 34
Q ss_pred CCeEEEEcccc
Q 040733 219 PGPVLIDIPVD 229 (643)
Q Consensus 219 ~GPV~i~iP~D 229 (643)
-||+.|..|..
T Consensus 466 ~gP~AiRyPrg 476 (627)
T COG1154 466 DGPVAIRYPRG 476 (627)
T ss_pred CCCeEEEecCC
Confidence 58999999975
No 339
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=77.52 E-value=5.2 Score=44.39 Aligned_cols=137 Identities=20% Similarity=0.225 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhCC-----CcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccc---cCCCCcHH
Q 040733 257 DELALRQTLKLIVESK-----NPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRM---VGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak-----rPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~---~g~~~~~~ 328 (643)
-+++++.+++.|++.+ +-+++.|+... ....+.+|+..+|.+-+.+... +.. .+...+. +|..+..
T Consensus 76 WdeAl~~ia~~l~~~~~~~G~~~i~~~~~~~~-~~~~~~~~~~~lGt~n~~~~~~---~c~-~~~~~~~~~~~g~~~~~- 149 (454)
T cd02755 76 WDEALQYIASKLKEIKEQHGPESVLFGGHGGC-YSPFFKHFAAAFGSPNIFSHES---TCL-ASKNLAWKLVIDSFGGE- 149 (454)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEEecCCc-ccHHHHHHHHHhCCCCCCCccc---cch-hHHHHHHHHHhhccCCC-
Confidence 4677888887777543 22343333221 3345678888888764322111 100 0000000 0111111
Q ss_pred HHHhhhcCCEEEEecCccCcccc----Ccc-ccccCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMT----SKL-EDFATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t----~~~-~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~ 399 (643)
..+-+.++|+||++|+.+.+... ..+ .......|+|.||+......+.-...+.+. .|...++..+...++
T Consensus 150 ~~~d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~~AD~~i~i~PGtD~al~~a~~~~ii~ 227 (454)
T cd02755 150 VNPDFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWIPIKPGTDLAFVLALIHVLIS 227 (454)
T ss_pred CCcchhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhHhhCEecCCCCCcHHHHHHHHHHHHHH
Confidence 12346799999999998643321 111 111245699999988776655322223333 455544444333333
No 340
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=77.41 E-value=17 Score=43.39 Aligned_cols=120 Identities=13% Similarity=0.031 Sum_probs=81.9
Q ss_pred EEecCChhHHHH--HHHHHHHHh-CCc-EEEEEccch-hhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC-C-CCCccC
Q 040733 110 SILPRHEQGGIF--AAEGYARSS-GTP-GVCLVSSGP-GVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT-D-AFQEIP 182 (643)
Q Consensus 110 ~i~~~hE~~A~~--~A~Gyar~s-g~~-gv~~~t~Gp-G~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~-~-~~Q~~d 182 (643)
+-....|++++. +|.|-|..+ |++ -.+.++..+ |+.=+.--+-.|-..+.++.+|.+.......+. + .+|.+.
T Consensus 563 ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq~~e 642 (889)
T TIGR03186 563 LEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQDGT 642 (889)
T ss_pred EEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCcccccchH
Confidence 346789999997 888877764 443 233345555 344556666666677788777776665522332 2 478888
Q ss_pred HHHHhhccce-eeeEeCCcCcHHHHHHHHHHHhhcC-CCCeEEEEcccc
Q 040733 183 VVEVTRYMTK-HNYLVLDVDDIPRIIKEAFFIATSG-RPGPVLIDIPVD 229 (643)
Q Consensus 183 ~~~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~s~-~~GPV~i~iP~D 229 (643)
...+++.+.. -.+...+..++..+++.+++.+... ..||+||.+...
T Consensus 643 Dial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~ 691 (889)
T TIGR03186 643 SHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNE 691 (889)
T ss_pred hHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 8888888753 3556777788999999999855544 469999999754
No 341
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.02 E-value=10 Score=42.27 Aligned_cols=136 Identities=18% Similarity=0.070 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhCC------CcEEEEcCCchh--hHHHHH-HHHHHhCCceeecCCCCCCCCCCCCCcccc---cCCC
Q 040733 257 DELALRQTLKLIVESK------NPVLCVGGGCLN--SSEELR-KFVGLTGIPVTCTTMGLGLFPCTDELCLRM---VGMF 324 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak------rPvIl~G~g~~~--~~~~l~-~lae~lg~PV~tt~~gkg~~~~~hpl~lG~---~g~~ 324 (643)
-+++++.+++.|++.+ .-.++.|.+... ...... +|+..+|.+.+... +. ... .+...+. +|..
T Consensus 75 WdeAl~~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~~Gs~~~~~~-~~--~c~-~~~~~~~~~~~G~~ 150 (477)
T cd02759 75 WDEALDEIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGSPNLFLS-GE--SCY-WPRDMAHALTTGFG 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHHhcCCCcccCC-cc--cch-HHHHHHHHHhhccC
Confidence 4677777777776532 224444644431 112222 68888887654321 11 110 0111110 1111
Q ss_pred CcHHHHHhhhcCCEEEEecCccCcccc----Ccccc-ccCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHH
Q 040733 325 GTVYANYAVNECDLLLAAGVRFNERMT----SKLED-FATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMI 397 (643)
Q Consensus 325 ~~~~~~~~l~~aDlvL~vG~~~~~~~t----~~~~~-~~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~ 397 (643)
.. ....-+.+||+||++|+.+.+... ..+.. .....|+|.||+........-...+.+. .|... +.+|...
T Consensus 151 ~~-~~~~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~Ad~~l~i~PGtD~al-~~al~~~ 228 (477)
T cd02759 151 LG-YDEPDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWLPIRPGTDAAL-ALGMLNV 228 (477)
T ss_pred CC-CCchhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHhhCeeeccCCCcHHHH-HHHHHHH
Confidence 11 112346799999999998743221 11111 1235699999998887764322223332 35444 4444444
Q ss_pred H
Q 040733 398 L 398 (643)
Q Consensus 398 l 398 (643)
+
T Consensus 229 i 229 (477)
T cd02759 229 I 229 (477)
T ss_pred H
Confidence 4
No 342
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=74.87 E-value=2.8 Score=44.88 Aligned_cols=115 Identities=20% Similarity=0.179 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhCC-----CcEE-EEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCc-ccccCCCCcHH
Q 040733 257 DELALRQTLKLIVESK-----NPVL-CVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELC-LRMVGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak-----rPvI-l~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~-lG~~g~~~~~~ 328 (643)
-+++++.+++.|++.+ +.+. +.|.+.. .....+.+|...+|.+.+.........+....+. .|. +..+..
T Consensus 73 WdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 150 (374)
T cd00368 73 WDEALDEIAEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFGG-GAPTNT- 150 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHHhcCCCccCCCCcccHHHHHHHHHHhCC-CCCCCC-
Confidence 4677888888887763 4454 4444443 3334455678888887654332211111000000 011 111111
Q ss_pred HHHhhhcCCEEEEecCccCccccC---cc-ccccCCceEEEEcCCccccc
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTS---KL-EDFATRAKIVHIDIDSNEIG 374 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~---~~-~~~~~~~~iI~Id~d~~~i~ 374 (643)
..-++++|+||.+|+.+.+.... .+ ......+|+|.||+......
T Consensus 151 -~~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~ 199 (374)
T cd00368 151 -LADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETA 199 (374)
T ss_pred -HHHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcch
Confidence 22367999999999886422111 11 11224679999998887654
No 343
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=74.13 E-value=3.7 Score=40.72 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=36.5
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc-c-cCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED-F-ATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~-~-~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
+.+.+.++|++|++|+++.-.....+-. . ..+.++|.|+.++...+ ...++.+.+|
T Consensus 161 a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~--~~~d~~~~~~ 218 (218)
T cd01407 161 AAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPAD--RKADLVILGD 218 (218)
T ss_pred HHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCC--ccceEEEeCC
Confidence 4456678999999999985433322221 1 24678999999887665 3356666553
No 344
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=73.93 E-value=4.1 Score=40.51 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=32.4
Q ss_pred HHHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccC
Q 040733 328 YANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGK 375 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~ 375 (643)
.+.+.+.++|++|++|+++.-.....+... ...+++|.|+.++...+.
T Consensus 164 ~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~~~ 213 (222)
T cd01413 164 EAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPFDY 213 (222)
T ss_pred HHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCCCc
Confidence 344567899999999999864433333222 235689999998875543
No 345
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=73.84 E-value=1.9 Score=43.75 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=55.9
Q ss_pred HHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCC----CCCCeeEecCHHHHHHHHHHHHhhc
Q 040733 330 NYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKV----KLPDVSICADAKLVFNRMNMILESK 401 (643)
Q Consensus 330 ~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~----~~~~~~i~~D~~~~L~~L~~~l~~~ 401 (643)
.+.++.+|.||.+-+.+...-++++ .+...|.|.+|++|....|- ....+.++.|+..||..|...|++.
T Consensus 333 ~~~l~g~dmvlMlstMLHSIa~GNl--lPs~VKtiCVDiNPavVTKL~DRGs~qavgvVTDVGlFlplL~~elkkl 406 (415)
T COG1915 333 REHLQGADMVLMLSTMLHSIAVGNL--LPSGVKTICVDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRELKKL 406 (415)
T ss_pred HHHhccCccHHHHHHHHHHHhhcCc--chhhceEEEEecChHHheecccCCccceeEEEeehhHhHHHHHHHHHHh
Confidence 4678999999999999877767653 34578999999999987553 3356899999999999998777653
No 346
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=73.81 E-value=23 Score=34.34 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=60.9
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHH--Hh------hCCCeEEecCChhHHH-----------HHHHHHHHHh
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQS--LT------RSNIRSILPRHEQGGI-----------FAAEGYARSS 130 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~a--l~------~~~i~~i~~~hE~~A~-----------~~A~Gyar~s 130 (643)
...++.|.+.|.+.|-=++||+-++......-+ |. +.++..+.. .+.+.. .++.-.+...
T Consensus 31 ~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~-~d~~~~~~~~~d~~~~~~~~~~~~~~~ 109 (192)
T PRK00414 31 QRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI-SDVSHLSCVSNDFGYDYVFSRYVEAVG 109 (192)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec-CcHHHHhhhhccCCHHHHHHHHHHHhC
Confidence 367888888888889889999977755333322 21 223554443 333221 1121222122
Q ss_pred CCcEEEEEccchh-hHHHHHHHHHhhhCCCCEEEEeCCCc
Q 040733 131 GTPGVCLVSSGPG-VTNIMTGLMDAYSDSIPILAITGQVS 169 (643)
Q Consensus 131 g~~gv~~~t~GpG-~~N~~~gl~~A~~~~vPvlvItg~~~ 169 (643)
.+--++++-|..| ..+.+.++..|...++|+|.||+...
T Consensus 110 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 110 REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 2324666666666 45677899999999999999998654
No 347
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=73.75 E-value=31 Score=33.46 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=54.2
Q ss_pred HHHHHHHHHh---CCcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceee
Q 040733 121 FAAEGYARSS---GTPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHN 194 (643)
Q Consensus 121 ~~A~Gyar~s---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~ 194 (643)
-+|.|.|.+. ++...+++..|=|..+ ..-++..|.....|+++|.-+......+. .+ +....++. .-|.
T Consensus 82 ~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~---~~-~~~~~~~a-~G~~ 156 (195)
T cd02007 82 SAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPN---VG-TPGNLFEE-LGFR 156 (195)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCC---CC-CHHHHHHh-cCCC
Confidence 3455554432 3344555556766664 45677777777999999875443222111 01 44556664 2343
Q ss_pred eEe-CCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 195 YLV-LDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 195 ~~v-~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
+.. .+..++. .+.+|++.|... .||+.|.+-
T Consensus 157 ~~~~vdG~d~~-~l~~a~~~a~~~-~~P~~I~~~ 188 (195)
T cd02007 157 YIGPVDGHNIE-ALIKVLKEVKDL-KGPVLLHVV 188 (195)
T ss_pred ccceECCCCHH-HHHHHHHHHHhC-CCCEEEEEE
Confidence 321 2444433 445666666653 589998763
No 348
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=72.34 E-value=40 Score=35.12 Aligned_cols=113 Identities=17% Similarity=0.104 Sum_probs=66.4
Q ss_pred CeEEecCChhHHHHHHHHHHHHh---CC--cEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc----------
Q 040733 108 IRSILPRHEQGGIFAAEGYARSS---GT--PGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL---------- 172 (643)
Q Consensus 108 i~~i~~~hE~~A~~~A~Gyar~s---g~--~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~---------- 172 (643)
+.++...+|.+++ +|.|.+++. ++ ..||+.-=|-.+-..+.+|..|...+.++++|.=|.....
T Consensus 64 ~~~~~~~fg~~~a-~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~T 142 (299)
T PRK11865 64 VPWIHVAFENAAA-VASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGST 142 (299)
T ss_pred cccchhhhcchHH-HHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCC
Confidence 6677777787764 566776663 33 4444443344444567899999999999999874332111
Q ss_pred ----------cCCC----CCCccCHHHHhhcc-ceeeeE--eCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 173 ----------LGTD----AFQEIPVVEVTRYM-TKHNYL--VLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 173 ----------~g~~----~~Q~~d~~~~~~~~-tk~~~~--v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
.|+. .....|...+...+ +.|..+ +.++.++.+.+++|. +. +||.+|.+
T Consensus 143 p~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~----~~-~Gps~I~v 208 (299)
T PRK11865 143 PFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAK----EV-EGPAYIQV 208 (299)
T ss_pred CCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHH----hC-CCCEEEEE
Confidence 0110 12346777766544 334444 344555555555554 33 59999987
No 349
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=71.71 E-value=14 Score=47.92 Aligned_cols=104 Identities=9% Similarity=0.094 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhh--CCCCEEEEeCCCccc-ccC--------C--------CCCCc
Q 040733 120 IFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYS--DSIPILAITGQVSQK-LLG--------T--------DAFQE 180 (643)
Q Consensus 120 ~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~--~~vPvlvItg~~~~~-~~g--------~--------~~~Q~ 180 (643)
.-+|.|++.+.+++.+|+ +.--|+.--++.|..|.. .++||++|.-+.... ... . ...+.
T Consensus 767 lpaAIGaala~~r~Vv~i-~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~ 845 (1655)
T PLN02980 767 LSTAIGFAVGCNKRVLCV-VGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQYFYTSHD 845 (1655)
T ss_pred HHHHHHHhhcCCCCEEEE-EehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHHhcCCCC
Confidence 557788887767777665 556678888899999977 489998887544321 000 0 00123
Q ss_pred cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 181 IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 181 ~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.|...+.+.+--...++.+++++...+++|+. .+||+.|+|..|
T Consensus 846 ~df~~lA~a~G~~~~rV~~~~eL~~aL~~a~~-----~~~p~lIEV~t~ 889 (1655)
T PLN02980 846 ISIENLCLAHGVRHLHVGTKSELEDALFTSQV-----EQMDCVVEVESS 889 (1655)
T ss_pred CCHHHHHHHcCCceeecCCHHHHHHHHHHhhc-----cCCCEEEEEecC
Confidence 57777888887788899998998888877764 358999999876
No 350
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=71.46 E-value=8.5 Score=47.03 Aligned_cols=139 Identities=17% Similarity=0.135 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHhCCC-----------------cEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCC---CC
Q 040733 257 DELALRQTLKLIVESKN-----------------PVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPC---TD 314 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Akr-----------------PvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~---~h 314 (643)
-+++++.+++.|++.+. -+.+.|++.. +..-.+.+|+..+|.+-+... ++-+... ..
T Consensus 125 WDEAld~IA~kLk~i~~~~~~~~~~~G~~~~~~~sia~~~s~~~tnEe~yl~~kf~r~lGt~n~~~~-~~~C~~~~~~al 203 (1009)
T TIGR01553 125 WDWAIDTIARRVKDTRDATFVTKDAKGQVVNRCDGIASVGSSAMDNEECWLYQKWLRSLGLFYIEHQ-ARIUHSPTVASL 203 (1009)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCccccccceEEEEecCCCCcHHHHHHHHHHHHhCCCcccCc-ccccccHHHHHH
Confidence 46778887777765321 1333333322 233356789888887644321 1100000 00
Q ss_pred CCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccC---cc-ccccCCceEEEEcCCcccccCCCCCCeeEe--cCHH
Q 040733 315 ELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTS---KL-EDFATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAK 388 (643)
Q Consensus 315 pl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~---~~-~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~ 388 (643)
...+|.-.+ ... ..-+.++|+||++|+...+.... .+ ......+|+|.||+........-...+.|. .|+.
T Consensus 204 ~~~~G~~~~-~~~--~~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~irPGTD~A 280 (1009)
T TIGR01553 204 APSFGRGAM-TNN--WVDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAPIRSGSDIA 280 (1009)
T ss_pred HHhhcCCCC-CCC--HHHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeCCCCChHHH
Confidence 111222111 111 13378999999999986533211 11 112245799999987766544222223332 4554
Q ss_pred HHHHHHHHHHh
Q 040733 389 LVFNRMNMILE 399 (643)
Q Consensus 389 ~~L~~L~~~l~ 399 (643)
.++..+...++
T Consensus 281 L~~am~~~Ii~ 291 (1009)
T TIGR01553 281 FLNGMIKYILE 291 (1009)
T ss_pred HHHHHHHHHHH
Confidence 44433333343
No 351
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=71.39 E-value=19 Score=37.91 Aligned_cols=111 Identities=13% Similarity=0.080 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCchhh----------HHHHHHHHHHhCCceeec---CCCCCC--------------
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCLNS----------SEELRKFVGLTGIPVTCT---TMGLGL-------------- 309 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~~~----------~~~l~~lae~lg~PV~tt---~~gkg~-------------- 309 (643)
..+.+.++++++++|+-.+|++|-|...+ ...+.+|=|..++-+... .+-.|.
T Consensus 231 p~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak~tli~mrgH~Nv~GFnqv~~~e~GYpf~v 310 (429)
T COG1029 231 PIEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAKFTLIPMRGHYNVTGFNEVLSWETGYPFAV 310 (429)
T ss_pred CHHHHHHHHHHHhcCCcceEEEeeceeecccccccHHHHHHHHHHHhhhceEEEEEeccccccccccchhhhhhCCceee
Confidence 35678899999999999999999987521 223344444444433221 111110
Q ss_pred -CCCCCCCcccccCCCCcHHHHHhhh--cCCEEEEecCccCccccCccccccCCceEEEEcCCccc
Q 040733 310 -FPCTDELCLRMVGMFGTVYANYAVN--ECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNE 372 (643)
Q Consensus 310 -~~~~hpl~lG~~g~~~~~~~~~~l~--~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~ 372 (643)
|...+|.|- -|.-.+.++|+ ++|-.|++|+.+..-.....-..+.+-.+|+||+.+.-
T Consensus 311 dF~rG~pryn-----PgE~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~eIPvI~iDp~~~p 371 (429)
T COG1029 311 DFSRGYPRYN-----PGEFSAVDLLKRKEVDAALVIASDPGAHFPRDAVEHLAEIPVICIDPHPTP 371 (429)
T ss_pred ecccCCcCCC-----cccccHHHHHhccCCCeEEEEecCccccChHHHHHHhhcCCEEEecCCCCc
Confidence 222333321 12224556664 79999999998743222222223445678999877653
No 352
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=71.34 E-value=5.7 Score=41.66 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCch--hhH---HHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCC---------
Q 040733 259 LALRQTLKLIVESKNPVLCVGGGCL--NSS---EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMF--------- 324 (643)
Q Consensus 259 ~~i~~~~~~L~~AkrPvIl~G~g~~--~~~---~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~--------- 324 (643)
...++++.+|.+|++.+|+-|+|-. .++ .|+.+..|+-|++|=-. -||-.-.+-|..
T Consensus 296 ~saedaA~~l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~~~Gv~Vrfa---------IHPVAGRmPGHMNVLLAEA~V 366 (463)
T COG1282 296 GSAEDAAELLKNASSVIIVPGYGMAVAQAQHPVAEITEKLRARGVNVRFA---------IHPVAGRMPGHMNVLLAEAKV 366 (463)
T ss_pred cCHHHHHHHHhCCCeEEEecCchHHHHhhhhHHHHHHHHHHhcCCeeeEe---------ecccccCCCcchhhhhhhccC
Confidence 3467788999999999999999865 344 44444555557776221 133211111110
Q ss_pred ------CcHHHHHhhhcCCEEEEecCc
Q 040733 325 ------GTVYANYAVNECDLLLAAGVR 345 (643)
Q Consensus 325 ------~~~~~~~~l~~aDlvL~vG~~ 345 (643)
--...|+-..++|++|++|..
T Consensus 367 pYd~v~emddIN~dF~~tDVvlVIGAN 393 (463)
T COG1282 367 PYDIVLEMDEINDDFADTDVVLVIGAN 393 (463)
T ss_pred CHHHHhhHHhhcchhccccEEEEEccC
Confidence 012334456789999999976
No 353
>PRK05261 putative phosphoketolase; Provisional
Probab=71.11 E-value=48 Score=39.20 Aligned_cols=113 Identities=18% Similarity=0.056 Sum_probs=73.1
Q ss_pred CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhh---------------hCCCCEEEEeCCCcccc
Q 040733 108 IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAY---------------SDSIPILAITGQVSQKL 172 (643)
Q Consensus 108 i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~---------------~~~vPvlvItg~~~~~~ 172 (643)
=++|....|..+..++.||+. +|+.+++ .|+. .++..+-.+.+++ ..++. +++|.+.=+..
T Consensus 450 Grvie~LsEh~~~g~~~Gy~L-tG~~~~~-~sYe-aF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn-~l~Ts~~~~qg 525 (785)
T PRK05261 450 GRVMEVLSEHLCEGWLEGYLL-TGRHGFF-SSYE-AFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN-YLLTSHVWRQD 525 (785)
T ss_pred CCeeeeecHHHHHHHHHHHHh-cCCCcce-ecHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCccee-EEeecceeecC
Confidence 377779999999999999998 8987776 4555 6776666777776 34443 55565443222
Q ss_pred cCCCCCCc---cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 173 LGTDAFQE---IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 173 ~g~~~~Q~---~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
.+--.+|. +|++...++=.-..++..+..++. .|++.|+..+.+|..|-+.+
T Consensus 526 hNG~THQ~Pg~ie~l~~~r~~~~rV~rPaDaNe~l----aa~~~al~s~~~p~~IvlsR 580 (785)
T PRK05261 526 HNGFSHQDPGFIDHVANKKPDVIRVYLPPDANTLL----AVADHCLRSRNYINVIVAGK 580 (785)
T ss_pred CCCCCCCCchHHHHHHhcCCCcceEEeCCCHHHHH----HHHHHHHHhCCCCEEEEEeC
Confidence 22235788 777777666333344444433343 45555555567899888865
No 354
>PRK13936 phosphoheptose isomerase; Provisional
Probab=70.66 E-value=28 Score=33.84 Aligned_cols=100 Identities=21% Similarity=0.304 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHH--HHHHHh------hCCCeEEecCChhHH----------HHHHHHHHHHhCC
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIE--IHQSLT------RSNIRSILPRHEQGG----------IFAAEGYARSSGT 132 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~--l~~al~------~~~i~~i~~~hE~~A----------~~~A~Gyar~sg~ 132 (643)
..++.+++.|.+.|.=++||.-++.... +...|. +-+++.+....+... ..+...+-....+
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 110 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ 110 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence 5678899999999988999987765433 323333 223545443222222 1111111122222
Q ss_pred c-EEEEEccchh-hHHHHHHHHHhhhCCCCEEEEeCCCcc
Q 040733 133 P-GVCLVSSGPG-VTNIMTGLMDAYSDSIPILAITGQVSQ 170 (643)
Q Consensus 133 ~-gv~~~t~GpG-~~N~~~gl~~A~~~~vPvlvItg~~~~ 170 (643)
+ -+++.-|..| ..+.+..+..|+..++|+|.||+....
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s 150 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGG 150 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 2 3444444454 455778899999999999999986543
No 355
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=70.40 E-value=34 Score=38.71 Aligned_cols=134 Identities=10% Similarity=0.075 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhCC---CcEEEEcCCch-hhHHHHHHHHHH-hCCceeecCCCCCCCCCCCCCccc---ccCCCCcHH
Q 040733 257 DELALRQTLKLIVESK---NPVLCVGGGCL-NSSEELRKFVGL-TGIPVTCTTMGLGLFPCTDELCLR---MVGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak---rPvIl~G~g~~-~~~~~l~~lae~-lg~PV~tt~~gkg~~~~~hpl~lG---~~g~~~~~~ 328 (643)
-+++++.+++.|++.+ +-.++.|.+.. .....+.+|+.. .|.+.+.. ... + .+....+ .+|.....
T Consensus 117 WdeAld~ia~~l~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~-~---~~~~~~~~~~~~G~~~~~- 190 (524)
T cd02764 117 WADFDAKVAEQLKAVKDGGKLAVLSGNVNSPTTEALIGDFLKKYPGAKHVVY-DPL-S---AEDVNEAWQASFGKDVVP- 190 (524)
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEEeCCCCCchHHHHHHHHHHhCCCCceeeE-CCC-C---hHHHHHHHHHHcCCCCCC-
Confidence 4677787777777643 33455565443 223345677775 34444321 000 0 0111111 12221111
Q ss_pred HHHhhhcCCEEEEecCccCcccc---Cccccc---cCC------ceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMT---SKLEDF---ATR------AKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRM 394 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t---~~~~~~---~~~------~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L 394 (643)
.+-++++|+||++|+.+.+... .....+ ..+ .|+|.||+........-...+.+. .|...++ +|
T Consensus 191 -~~D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~irPGtD~al~l-am 268 (524)
T cd02764 191 -GYDFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLAIRPSQEKAFAL-GL 268 (524)
T ss_pred -CcChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceeccCcccHHHHHH-HH
Confidence 1347899999999998754310 011111 111 389999988887765433333333 3554444 44
Q ss_pred HHHH
Q 040733 395 NMIL 398 (643)
Q Consensus 395 ~~~l 398 (643)
...+
T Consensus 269 ~~~i 272 (524)
T cd02764 269 AHKL 272 (524)
T ss_pred HHHH
Confidence 4333
No 356
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=70.33 E-value=47 Score=34.57 Aligned_cols=113 Identities=15% Similarity=0.012 Sum_probs=64.5
Q ss_pred CCeEEecCChhHHHHHHHHHHHHh-----CCcEEEEEccchhhH--HHHHHHHHhhhCCCCEEEEeCCCccc--------
Q 040733 107 NIRSILPRHEQGGIFAAEGYARSS-----GTPGVCLVSSGPGVT--NIMTGLMDAYSDSIPILAITGQVSQK-------- 171 (643)
Q Consensus 107 ~i~~i~~~hE~~A~~~A~Gyar~s-----g~~gv~~~t~GpG~~--N~~~gl~~A~~~~vPvlvItg~~~~~-------- 171 (643)
++.++...++.+++ +|.|.+++. ++..|| +..|=|.+ ..+.++..|...+.|+++|.-+....
T Consensus 63 ~~~~i~~~~G~~~~-~A~G~a~A~~~~~~~~~~Vv-a~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S 140 (300)
T PRK11864 63 TVPVLHTAFAATAA-VASGIEEALKARGEKGVIVV-GWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRS 140 (300)
T ss_pred cccceeehhhChHH-HHHHHHHHHHhhCCCCcEEE-EEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCC
Confidence 35667777776654 455666653 233333 34454443 34589999999999999997433211
Q ss_pred -ccCCC----------CCCccCHHHHhhcc-ceeeeEeC--CcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 172 -LLGTD----------AFQEIPVVEVTRYM-TKHNYLVL--DVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 172 -~~g~~----------~~Q~~d~~~~~~~~-tk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
.-+.+ .....|...+++.+ ..|..++. ++.++. ++++.|.. .+||.+|.+
T Consensus 141 ~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~----~~i~~A~~-~~Gps~I~~ 204 (300)
T PRK11864 141 SSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFI----RKLKKAKE-IRGFKFIHL 204 (300)
T ss_pred CCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHH----HHHHHHHh-CCCCEEEEE
Confidence 10111 12346777777655 33555543 334444 44555544 359999987
No 357
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=70.20 E-value=17 Score=41.12 Aligned_cols=133 Identities=16% Similarity=0.119 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhC------CCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccc---cCCCCcH
Q 040733 257 DELALRQTLKLIVES------KNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRM---VGMFGTV 327 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A------krPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~---~g~~~~~ 327 (643)
-+++++.+++.|++. ++.+++.|.........+.+|...+|.|-+.+... +.. .....|. .|..+..
T Consensus 81 WdeAl~~ia~~l~~~~~~~g~~~i~~~~g~~~~~~~~~~~r~~~~~Gs~~~~~~~~---~c~-~~~~~~~~~~~g~~~~~ 156 (523)
T cd02757 81 WDEALDTIADKIRALRKENEPHKIMLHRGRYGHNNSILYGRFTKMIGSPNNISHSS---VCA-ESEKFGRYYTEGGWDYN 156 (523)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCccchHHHHHHHHhCcCCCcCCcc---hhh-hHHHHHHHHHhCCCCCC
Confidence 467777777777643 33455666644433336788999999875422211 100 0000111 1111111
Q ss_pred HHHHhhhcCCEEEEecCccCccc--cC---cc-ccccCCceEEEEcCCcccccCCCCCCeeEe----cCHHHHHHHHHHH
Q 040733 328 YANYAVNECDLLLAAGVRFNERM--TS---KL-EDFATRAKIVHIDIDSNEIGKVKLPDVSIC----ADAKLVFNRMNMI 397 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~--t~---~~-~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D~~~~L~~L~~~ 397 (643)
.+-+.+||+||++|+..-+.. .. .+ ......+|+|.||+........ +|..|. .|.. ++.+|...
T Consensus 157 --~~D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~--AD~~l~i~PGtD~a-l~lama~~ 231 (523)
T cd02757 157 --SYDYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAK--ADEWLPIKPGEDGA-LALAIAHV 231 (523)
T ss_pred --CcchhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhHh--cCEeeCCCCCcHHH-HHHHHHHH
Confidence 124689999999998753211 11 00 1112467999999888776553 444443 3444 44444433
Q ss_pred H
Q 040733 398 L 398 (643)
Q Consensus 398 l 398 (643)
+
T Consensus 232 i 232 (523)
T cd02757 232 I 232 (523)
T ss_pred H
Confidence 3
No 358
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=68.90 E-value=12 Score=39.85 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=27.1
Q ss_pred HHHhhhcCCEEEEecCccCccccCccccc-cCCceEEEEcCCcc
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLEDF-ATRAKIVHIDIDSN 371 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~~-~~~~~iI~Id~d~~ 371 (643)
+...+.++|++|+||+++.-.....+... ...+.+|.|+.++.
T Consensus 199 a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~~~~pvviIN~e~~ 242 (349)
T PTZ00410 199 VHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVLFNLERV 242 (349)
T ss_pred HHHHHHhCCEEEEECcCCcccCHHHHHHHHhcCCCEEEECcccc
Confidence 45567899999999999854433222211 13466777766554
No 359
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=68.59 E-value=23 Score=37.97 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=65.0
Q ss_pred CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCCC-CCCccCH
Q 040733 108 IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGTD-AFQEIPV 183 (643)
Q Consensus 108 i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~~-~~Q~~d~ 183 (643)
..-+..-+=-.|+.+|.+.-+ .|+..++++..|=|++| ..-++.-|...+.|+|+|.-+... .+++. ..|.. .
T Consensus 136 ~~~~vG~~~p~A~G~A~A~k~-~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~-aist~~~~~~~-~ 212 (362)
T PLN02269 136 GHGIVGAQVPLGAGLAFAQKY-NKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHY-GMGTAEWRAAK-S 212 (362)
T ss_pred cCchhhccccHHHHHHHHHHH-hCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCE-eccCchhhhcc-c
Confidence 334445555556666666543 34567777778877766 556777778889999999864332 22221 11110 0
Q ss_pred HHHhh-ccceeeeEe--CCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 184 VEVTR-YMTKHNYLV--LDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 184 ~~~~~-~~tk~~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
..+.+ ...-...+| .++..+.+.+.+|...+.+ .||+.|++
T Consensus 213 ~~~~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~--~gP~lIe~ 256 (362)
T PLN02269 213 PAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALS--NGPIVLEM 256 (362)
T ss_pred hHHHHhhcCCCeEEECCCCHHHHHHHHHHHHHHHHh--CCCEEEEE
Confidence 01111 010112333 3455677788888887777 49999987
No 360
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=65.69 E-value=9.8 Score=34.49 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=63.3
Q ss_pred hHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHH-HHhCCCeEEEEEeCCCchhhHHHHHHhhcccc-cccccCCCCCC
Q 040733 490 LPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAI-KAENIPVKILLINNQYLGMNVEYEDRYFEANR-ANSFLGDPLRK 567 (643)
Q Consensus 490 lpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta-~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~-~~~~~g~p~~~ 567 (643)
++-+.|+.+|. ++...++-..|+.-+++.|... +-|++|+.+++-.-+.++ +.. .+..+
T Consensus 55 ~GIcAGa~lAG--kk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~-----------E~i~AQVpm------ 115 (172)
T COG4032 55 VGICAGAYLAG--KKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLK-----------EGIEAQVPM------ 115 (172)
T ss_pred eeeehhhhhcC--CCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhh-----------cCCcccccc------
Confidence 44456788885 3445566667777788888765 678999887764333221 110 01111
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHH----HHhCCCcEEEE
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQL----MLETPGPYLLD 611 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~----al~~~gp~lIe 611 (643)
.--..++-+.++++.+++.+++|-.+.++. +++..+|+.+-
T Consensus 116 ---Gr~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vl 160 (172)
T COG4032 116 ---GRALPKILEGLELPTYTIIGPEEALPLIENAILDAFENSRPVAVL 160 (172)
T ss_pred ---chhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 114568899999999999999995555554 55567776543
No 361
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=64.70 E-value=16 Score=42.19 Aligned_cols=142 Identities=14% Similarity=0.110 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhCCC----cEEE--EcCCch-----hhHHHHHHHHHHhCCceeec-CCCCCCCCCCCCCcccccCCC
Q 040733 257 DELALRQTLKLIVESKN----PVLC--VGGGCL-----NSSEELRKFVGLTGIPVTCT-TMGLGLFPCTDELCLRMVGMF 324 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Akr----PvIl--~G~g~~-----~~~~~l~~lae~lg~PV~tt-~~gkg~~~~~hpl~lG~~g~~ 324 (643)
-+++++.+++.|++.+. -.|+ .|.+.. .....+.+|+..+|.++... ...-+..-..++...|.....
T Consensus 78 WDEAl~~iA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~c~~~~~~~~~~~~G~~~~~ 157 (609)
T cd02751 78 WDEALDLVASELKRIREKYGNEAIFGGSYGWASAGRLHHAQSLLHRFLNLIGGYLGSYGTYSTGAAQVILPHVVGSDEVY 157 (609)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceeecccCCcccccccccchHHHHHHHHhcCCCcCCCCCccHHHHHhHhhhEEccchhc
Confidence 56788888887765321 2232 233221 22345778888877644211 000000001112233321100
Q ss_pred C-cHHHHHhhhcCCEEEEecCccCccccC-----------ccc-cccCCceEEEEcCCcccccCCCCCCeeE--e--cCH
Q 040733 325 G-TVYANYAVNECDLLLAAGVRFNERMTS-----------KLE-DFATRAKIVHIDIDSNEIGKVKLPDVSI--C--ADA 387 (643)
Q Consensus 325 ~-~~~~~~~l~~aDlvL~vG~~~~~~~t~-----------~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i--~--~D~ 387 (643)
+ .....++..++|+||++|+...+.... .+. .....+|+|.||+........ .+|..| . .|.
T Consensus 158 ~~~~~~~D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta~~-~AD~~l~irPGtD~ 236 (609)
T cd02751 158 EQGTSWDDIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAAV-LAAEWIPIRPGTDV 236 (609)
T ss_pred cCCCChhhHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccccc-cCCEEECCCCCcHH
Confidence 0 111223333599999999886432211 111 112457999999888776541 234333 2 466
Q ss_pred HHHHHHHHHHHh
Q 040733 388 KLVFNRMNMILE 399 (643)
Q Consensus 388 ~~~L~~L~~~l~ 399 (643)
..++..+...++
T Consensus 237 aL~lam~~~ii~ 248 (609)
T cd02751 237 ALMLAMAHTLIT 248 (609)
T ss_pred HHHHHHHHHHHH
Confidence 555544444343
No 362
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=63.13 E-value=41 Score=32.70 Aligned_cols=101 Identities=21% Similarity=0.235 Sum_probs=61.1
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHH--HHHh------hCCCeEEecCChhHHHHHHH----HH----HHH---h
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIH--QSLT------RSNIRSILPRHEQGGIFAAE----GY----ARS---S 130 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~--~al~------~~~i~~i~~~hE~~A~~~A~----Gy----ar~---s 130 (643)
...++.|++.|.+.|-=++||+-|+....-. ..|. +-++..+....+.. ...|. || +|. .
T Consensus 28 ~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~-~~ta~and~~~~~~f~~ql~~~ 106 (196)
T PRK10886 28 SRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNV-VLTAIANDRLHDEVYAKQVRAL 106 (196)
T ss_pred HHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHH-HHHHHhccccHHHHHHHHHHHc
Confidence 3678888899988888888898886543322 2221 22355554322222 22221 22 222 2
Q ss_pred CCc-EEEEEccchh-hHHHHHHHHHhhhCCCCEEEEeCCCccc
Q 040733 131 GTP-GVCLVSSGPG-VTNIMTGLMDAYSDSIPILAITGQVSQK 171 (643)
Q Consensus 131 g~~-gv~~~t~GpG-~~N~~~gl~~A~~~~vPvlvItg~~~~~ 171 (643)
.++ -++++-|+.| .-|++.++.-|+..+.|+|.|||.....
T Consensus 107 ~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~ 149 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGE 149 (196)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 333 3444444554 5678899999999999999999965543
No 363
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=62.99 E-value=37 Score=32.47 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=49.0
Q ss_pred CCeEEEEecCccccC--CHHHH-HHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHH
Q 040733 502 GAIVVDIDGDGSFIM--NLQEL-AAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFA 578 (643)
Q Consensus 502 ~~~Vv~i~GDGsf~m--~~~eL-~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA 578 (643)
.++++++.+||+-.- ...++ ..+++.++.|.+|=+.++- .-+.++|
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~~-------------------------------~~L~~ia 155 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAEM-------------------------------HICKEIC 155 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechHH-------------------------------HHHHHHH
Confidence 356888888887543 33343 3455667777666663210 0167899
Q ss_pred hHCCCCEEEeCChhHHHHHHHHHH
Q 040733 579 EACGIPAARVTKKKDVRAAIQLML 602 (643)
Q Consensus 579 ~a~G~~~~~V~~~~eL~~al~~al 602 (643)
++=|.+++.+.+.++|.+.+.++.
T Consensus 156 ~~tgG~~~~~~~~~~l~~~~~~~~ 179 (183)
T cd01453 156 KATNGTYKVILDETHLKELLLEHV 179 (183)
T ss_pred HHhCCeeEeeCCHHHHHHHHHhcC
Confidence 999999999999999999998743
No 364
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=62.95 E-value=7.9 Score=32.20 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=36.1
Q ss_pred cEEEEcCCch--hhHHHHHHHHHHhCCceeecC--CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCc
Q 040733 274 PVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT--MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVR 345 (643)
Q Consensus 274 PvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~--~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~ 345 (643)
-|+-+|.|.. +..+.+++||+.+|+-|-.|- --.|.+|.+ ..+|..| . .-.+++.|.+|.+
T Consensus 9 ~VV~~GrG~~~~e~~~l~~~LA~~lga~vg~SRp~vd~gw~p~~--~qIG~sG---~------~v~P~lyia~GIS 73 (86)
T PF00766_consen 9 VVVAGGRGVGSKENFELIEELAEALGAAVGASRPVVDAGWIPRE--RQIGQSG---K------TVAPKLYIAFGIS 73 (86)
T ss_dssp EEEEE-GGG-STGGCHHHHHHHHHHT-EEEE-HHHHHTTSS-GG--GBBSTTS---B--------T-SEEEEES--
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhCCchhccHHHHhCCCCchh--hhcCCCC---c------EEeeeeeEeecch
Confidence 3444566765 456789999999999998873 246777753 4555544 2 2478999999976
No 365
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=62.31 E-value=3e+02 Score=33.29 Aligned_cols=117 Identities=12% Similarity=0.046 Sum_probs=67.2
Q ss_pred EEecCChhHHHH--HHHHHHHHh-CCcEE-EEEccch-hhHHHHH-HHHHhhhCCCCEEEEeCCCcccccCCC-CCCccC
Q 040733 110 SILPRHEQGGIF--AAEGYARSS-GTPGV-CLVSSGP-GVTNIMT-GLMDAYSDSIPILAITGQVSQKLLGTD-AFQEIP 182 (643)
Q Consensus 110 ~i~~~hE~~A~~--~A~Gyar~s-g~~gv-~~~t~Gp-G~~N~~~-gl~~A~~~~vPvlvItg~~~~~~~g~~-~~Q~~d 182 (643)
+-....|+++.. +|.|-|.++ |++-+ +.+|..+ |+.-+.- .-..+.....++++++-......-+.+ .+|+..
T Consensus 568 ~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHqdg~ 647 (891)
T PRK09405 568 LQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHEDGH 647 (891)
T ss_pred EEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccCCchh
Confidence 446789999888 888877764 44323 3344444 2333333 122223344555555432222222222 356666
Q ss_pred HHHHhhccce-eeeEeCCcCcHHHHHHHHHHHhhcCCCC--eEEEEcc
Q 040733 183 VVEVTRYMTK-HNYLVLDVDDIPRIIKEAFFIATSGRPG--PVLIDIP 227 (643)
Q Consensus 183 ~~~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~s~~~G--PV~i~iP 227 (643)
...+++.+.. -.+...+..++..+++.+++.+.... + |+||.+.
T Consensus 648 s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~-~~~~yYlrl~ 694 (891)
T PRK09405 648 SHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQ-ENVFYYITVM 694 (891)
T ss_pred hHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcC-CCeEEEEEeC
Confidence 6668888753 35566777788889999888554322 4 7778886
No 366
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=61.28 E-value=67 Score=33.08 Aligned_cols=130 Identities=15% Similarity=0.244 Sum_probs=76.3
Q ss_pred CeEE-EeCCChhHHHHHHhccccCCCeEEecCCCccccc----chHHHHHHHHhCCCCeEEEEecCccccCC-HHH--HH
Q 040733 451 ETII-STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGF----GLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQE--LA 522 (643)
Q Consensus 451 d~iv-~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~----glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~e--L~ 522 (643)
|.++ ..|.+.+.- ..++.-.-|.+|+. ||. .+++|.|.+++. .++ .+++=+.|++. .-| -.
T Consensus 26 diVvl~ADl~~St~--~~~f~~~fPdR~~N------vGIaEQ~mvg~AAGLA~~G-k~P--fv~tfa~F~s~Ra~EQir~ 94 (312)
T COG3958 26 DIVVLDADLSSSTK--TGYFAKEFPDRFFN------VGIAEQDMVGTAAGLALAG-KKP--FVSTFAAFLSRRAWEQIRN 94 (312)
T ss_pred CEEEEecccccccc--hhHHHHhCchhhee------cchHHHHHHHHHHHHHhcC-CCc--eeechHHHHHHHHHHHHHH
Confidence 4443 356655432 22333344677764 454 478888888764 233 36678888883 444 35
Q ss_pred HHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCC---CEEEeCChhHHHHHHH
Q 040733 523 AIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGI---PAARVTKKKDVRAAIQ 599 (643)
Q Consensus 523 Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~---~~~~V~~~~eL~~al~ 599 (643)
+..+.++||++|..+-+- . ++. .| + .+ --++.+|-.=|+ .-+...+.-+.++++.
T Consensus 95 ~iay~~lnVKiv~t~~G~-t---------~g~------dG-~---sH--q~~EDiaimR~lpn~~V~~P~D~v~~~~i~~ 152 (312)
T COG3958 95 SIAYNNLNVKIVATHAGV-T---------YGE------DG-S---SH--QALEDIAIMRGLPNMTVIAPADAVETRAILD 152 (312)
T ss_pred HhhhccCCeEEEEecCCc-c---------cCC------CC-c---cc--hhHHHHHHHhcCCCceEEccCcHHHHHHHHH
Confidence 567889999999986542 1 000 00 0 01 123444443344 3444567778899999
Q ss_pred HHHhCCCcEEEEEE
Q 040733 600 LMLETPGPYLLDVM 613 (643)
Q Consensus 600 ~al~~~gp~lIeV~ 613 (643)
++.+.+||+-+-+.
T Consensus 153 ~~~~~~GP~Y~Rl~ 166 (312)
T COG3958 153 QIADYKGPVYMRLG 166 (312)
T ss_pred HHHhcCCCEEEEec
Confidence 99999999987543
No 367
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=61.28 E-value=25 Score=37.86 Aligned_cols=103 Identities=24% Similarity=0.310 Sum_probs=66.3
Q ss_pred HHHHHHHhCCCCeEEE--EecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCC
Q 040733 492 AAMGAAVANPGAIVVD--IDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSE 569 (643)
Q Consensus 492 aAiGaalA~p~~~Vv~--i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~ 569 (643)
+|=|.+.+. +++-|+ -.|-|+... +.-|+-|.--++|++++-- + + +.. ..|+. ..
T Consensus 144 aAegYaR~s-gKPGvvlvTSGPGATNv-vtp~ADAlaDg~PlVvftG--Q----V---pts---------aIGtD---AF 200 (675)
T KOG4166|consen 144 AAEGYARSS-GKPGVVLVTSGPGATNV-VTPLADALADGVPLVVFTG--Q----V---PTS---------AIGTD---AF 200 (675)
T ss_pred hhhhhhhhc-CCCcEEEEecCCCcccc-cchhhHHhhcCCcEEEEec--c----c---chh---------hcccc---hh
Confidence 455555554 344333 345554433 5667888888889766531 1 1 111 11111 13
Q ss_pred CCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 570 IFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 570 ~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
...|...+.++|--.-+-|.+.+||..-+++|++ ++||+|+|++-|-.
T Consensus 201 QEadiVgisRScTKwNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDlPKDvt 253 (675)
T KOG4166|consen 201 QEADIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDLPKDVT 253 (675)
T ss_pred ccCCeeeeeeccceeheeeecHHHhhHHHHHHhhhhccCCCCCeEeeCcHHHH
Confidence 4568889999998888899999999999999885 57899999886543
No 368
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=61.15 E-value=62 Score=29.96 Aligned_cols=96 Identities=15% Similarity=0.222 Sum_probs=56.1
Q ss_pred HHHHHHHHHCCCCEEEEccCCCcHHHHHH--H------hhCCCeEEec---CChhHHHH----HHHHHHH---Hh-CCcE
Q 040733 74 DIIVEALERQGVTTVFAYPGGASIEIHQS--L------TRSNIRSILP---RHEQGGIF----AAEGYAR---SS-GTPG 134 (643)
Q Consensus 74 ~~lv~~L~~~GV~~vFg~PG~~~~~l~~a--l------~~~~i~~i~~---~hE~~A~~----~A~Gyar---~s-g~~g 134 (643)
+.+++.|.+.+.=++||+-++......-+ + .+.++..+.. .|+..+.. ..+=|.+ .. .+--
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 81 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGD 81 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCC
Confidence 46889999999889999877654332221 1 1223333332 22222221 1111222 11 3335
Q ss_pred EEEEccchhhHH-HHHHHHHhhhCCCCEEEEeCCCc
Q 040733 135 VCLVSSGPGVTN-IMTGLMDAYSDSIPILAITGQVS 169 (643)
Q Consensus 135 v~~~t~GpG~~N-~~~gl~~A~~~~vPvlvItg~~~ 169 (643)
++++-|.+|.+. .+..+..|...++|+|.||+...
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 666677777555 55788888999999999998543
No 369
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=60.49 E-value=6.6 Score=39.69 Aligned_cols=69 Identities=25% Similarity=0.301 Sum_probs=47.0
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+...++++|++|++|+++--+.-..+.. -...+++|.|+..+..+.. ..+..+.+++..+++.|.+.+.
T Consensus 176 ~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~~--~~d~~i~~~a~~~~~~l~~~~~ 246 (250)
T COG0846 176 ALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLDP--IADEVIRGDAGEVLPLLLEELL 246 (250)
T ss_pred HHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCcc--hhHHHHHhhHHHHHHHHHHHhh
Confidence 3456689999999999975333222222 1346789999887766554 4677777888888887776543
No 370
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=60.40 E-value=12 Score=40.97 Aligned_cols=143 Identities=19% Similarity=0.139 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHh---CCCc--EE--EEcCCc-hhhHHHHHHHHHHhCCceeecCCCCCCCCCCCC-Ccccc--c-CCC
Q 040733 257 DELALRQTLKLIVE---SKNP--VL--CVGGGC-LNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDE-LCLRM--V-GMF 324 (643)
Q Consensus 257 ~~~~i~~~~~~L~~---AkrP--vI--l~G~g~-~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hp-l~lG~--~-g~~ 324 (643)
-+++++.+++.|++ ...| ++ ..|++. ....-.+.+|++.+|-|-+......+..+..+. ..+|. . +..
T Consensus 22 WdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 101 (432)
T PF00384_consen 22 WDEALDEIAEKLKEIIDKYGPDSIAFFGSGGGTSNEEWYLLQRFARALGSPNTNNHGSQCDTCMASAAEAFGGDFVGGPA 101 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHCTGGGEEEEEETTTSSHHHHHHHHHHHHHTTHHEEEEEEEGGGCTTHHHHHHHSSHSHTSSS
T ss_pred HHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhheecccccCcc
Confidence 46778888877776 2334 33 333333 244556789999999974322211111110000 01111 1 111
Q ss_pred CcHHHHHhhhcCCEEEEecCccCccccC---c-cccc-cCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHH
Q 040733 325 GTVYANYAVNECDLLLAAGVRFNERMTS---K-LEDF-ATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMI 397 (643)
Q Consensus 325 ~~~~~~~~l~~aDlvL~vG~~~~~~~t~---~-~~~~-~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~ 397 (643)
.+. ..+-+.++|+||++|+........ . .... ...+|+|.||+........-...+.+. .|...++..+...
T Consensus 102 ~~~-~~~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~i~PGtD~al~~a~~~~i 180 (432)
T PF00384_consen 102 FGN-PLEDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIPIRPGTDAALALAMAHVI 180 (432)
T ss_dssp CCS-HHHGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEEE-TTTHHHHHHHHHHHH
T ss_pred ccc-ccceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhccccccccccccHHhhcccccce
Confidence 111 123578999999999886432211 1 1112 235899999998887554333344444 4555445444444
Q ss_pred Hhh
Q 040733 398 LES 400 (643)
Q Consensus 398 l~~ 400 (643)
++.
T Consensus 181 i~~ 183 (432)
T PF00384_consen 181 IDE 183 (432)
T ss_dssp HHT
T ss_pred eec
Confidence 443
No 371
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=60.06 E-value=11 Score=37.31 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=35.0
Q ss_pred HhhhcCCEEEEecCccCccccCccc-cc-cCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 331 YAVNECDLLLAAGVRFNERMTSKLE-DF-ATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 331 ~~l~~aDlvL~vG~~~~~~~t~~~~-~~-~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+.+.++|++|++|+++.......+- .. ..+.+++.|+.++.........++.+.
T Consensus 165 ~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~~~~~~~~~~~~ 220 (222)
T cd00296 165 EALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPADALKKADLVIL 220 (222)
T ss_pred HHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCCCCCCcceEEEe
Confidence 4566899999999999765443332 22 246789999998877652123444443
No 372
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=59.56 E-value=45 Score=38.19 Aligned_cols=67 Identities=24% Similarity=0.196 Sum_probs=40.7
Q ss_pred hhhcCCEEEEecCccCccccCccc----cccCCceEEEEcCCcccccCCCCCCeeE--e--cCHHHHHHHHHHHHhh
Q 040733 332 AVNECDLLLAAGVRFNERMTSKLE----DFATRAKIVHIDIDSNEIGKVKLPDVSI--C--ADAKLVFNRMNMILES 400 (643)
Q Consensus 332 ~l~~aDlvL~vG~~~~~~~t~~~~----~~~~~~~iI~Id~d~~~i~~~~~~~~~i--~--~D~~~~L~~L~~~l~~ 400 (643)
-+.++|+||++|+...+.....+. .....+|+|.||+....... .++..| . .|...++..+...+++
T Consensus 156 D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~--~Ad~~l~irPGTD~al~~am~~~ii~~ 230 (567)
T cd02765 156 DWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAA--KADQWVPIRPGTDPALALGMINYILEH 230 (567)
T ss_pred HHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchh--hcCEEeccCCCchHHHHHHHHHHHHhc
Confidence 367999999999986432211111 11246799999998887655 344433 3 5766665554444443
No 373
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=59.49 E-value=22 Score=41.01 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=42.4
Q ss_pred HhhhcCCEEEEecCccCccc--cC-ccc--cccCCceEEEEcCCcccccCCCCCCeeEe---cCHHHHHHHHHHHHhhc
Q 040733 331 YAVNECDLLLAAGVRFNERM--TS-KLE--DFATRAKIVHIDIDSNEIGKVKLPDVSIC---ADAKLVFNRMNMILESK 401 (643)
Q Consensus 331 ~~l~~aDlvL~vG~~~~~~~--t~-~~~--~~~~~~~iI~Id~d~~~i~~~~~~~~~i~---~D~~~~L~~L~~~l~~~ 401 (643)
+-+..+|+||+||+...+-. +. ++. .-...+|+|.+|+...++.. .+++.+. |.--..|.++...+-..
T Consensus 416 ~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emae--rAdlf~~pkpGtd~a~l~Avakyiide 492 (978)
T COG3383 416 EDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAE--RADLFLHPKPGTDLAWLTAVAKYIIDE 492 (978)
T ss_pred HHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHH--hhhcccCCCCCccHHHHHHHHHHHHhC
Confidence 45789999999999875432 11 111 11256799999999988866 3444443 33334566665555443
No 374
>PRK13937 phosphoheptose isomerase; Provisional
Probab=58.63 E-value=56 Score=31.41 Aligned_cols=100 Identities=21% Similarity=0.250 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHH--HHHh------hCCCeEEecC-ChhHHHHHH--HHH-------HH-HhC
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIH--QSLT------RSNIRSILPR-HEQGGIFAA--EGY-------AR-SSG 131 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~--~al~------~~~i~~i~~~-hE~~A~~~A--~Gy-------ar-~sg 131 (643)
..++.+++.|.+.+-=++||+-++.....+ ..+. +.++..+... +.......+ .|| .. ...
T Consensus 26 ~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (188)
T PRK13937 26 KVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALGR 105 (188)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhCC
Confidence 578899999999998899998665443222 1221 2235444432 222111110 011 11 112
Q ss_pred CcEEEEEccchh-hHHHHHHHHHhhhCCCCEEEEeCCCcc
Q 040733 132 TPGVCLVSSGPG-VTNIMTGLMDAYSDSIPILAITGQVSQ 170 (643)
Q Consensus 132 ~~gv~~~t~GpG-~~N~~~gl~~A~~~~vPvlvItg~~~~ 170 (643)
+--++++-|..| ..+.+.++..|...++|+|.||+....
T Consensus 106 ~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s 145 (188)
T PRK13937 106 PGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGG 145 (188)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 224555555555 455677888999999999999986543
No 375
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=58.08 E-value=28 Score=40.31 Aligned_cols=140 Identities=16% Similarity=0.116 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhCC------CcEEEEcCCchh----hHHHHHHHHHHhCCceeecC-CCCCCCCCCCCCcccccCCCC
Q 040733 257 DELALRQTLKLIVESK------NPVLCVGGGCLN----SSEELRKFVGLTGIPVTCTT-MGLGLFPCTDELCLRMVGMFG 325 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak------rPvIl~G~g~~~----~~~~l~~lae~lg~PV~tt~-~gkg~~~~~hpl~lG~~g~~~ 325 (643)
-+++++.+++.|++.+ .-.++.|.|..+ ....+.+|++.+|.++.... ...+..-......+|... .+
T Consensus 80 WDeAl~~ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~~~~~~~~~~~G~~~-~~ 158 (617)
T cd02770 80 WDEALDTIASELKRIIEKYGNEAIYVNYGTGTYGGVPAGRGAIARLLNLTGGYLNYYGTYSWAQITTATPYTYGAAA-SG 158 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhCchheEeeccccccCccccchHHHHHHHHhcCCccCCCCCccHhHHhhhhceEEecCC-CC
Confidence 4677888888777633 223444544332 24566788887775432100 000111111223333221 11
Q ss_pred cHHHHHhhhcCCEEEEecCccCcccc------Cccc-cccCCceEEEEcCCcccccCCCCCCe--eEe--cCHHHHHHHH
Q 040733 326 TVYANYAVNECDLLLAAGVRFNERMT------SKLE-DFATRAKIVHIDIDSNEIGKVKLPDV--SIC--ADAKLVFNRM 394 (643)
Q Consensus 326 ~~~~~~~l~~aDlvL~vG~~~~~~~t------~~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~--~i~--~D~~~~L~~L 394 (643)
.. ..-+.+||+||++|+...+... ..+. .....+|+|.||+....... ..+|. .|. .|...++..+
T Consensus 159 ~~--~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~-~~AD~~i~irPGTD~AL~lam~ 235 (617)
T cd02770 159 SS--LDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAV-TLADEWIPIRPGTDAALVAAMA 235 (617)
T ss_pred CC--HHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCcccc-ccCCEEECCCCCcHHHHHHHHH
Confidence 11 2346789999999998642211 1111 11245799999988876543 12343 333 5776666555
Q ss_pred HHHHhh
Q 040733 395 NMILES 400 (643)
Q Consensus 395 ~~~l~~ 400 (643)
...+++
T Consensus 236 ~~ii~e 241 (617)
T cd02770 236 YVMITE 241 (617)
T ss_pred HHHHHC
Confidence 544443
No 376
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=57.97 E-value=45 Score=39.64 Aligned_cols=137 Identities=17% Similarity=0.112 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhCC-----CcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHH
Q 040733 257 DELALRQTLKLIVESK-----NPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANY 331 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak-----rPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~ 331 (643)
-+++++.+++.|.+.+ .-+.+.++ .......+.+|+..+|.|-+... +.+.. .+...+..-..|.. ...
T Consensus 119 WdEAl~~ia~~l~~i~~~~G~~~i~~~~~-~~~~~~~~~~~~~~~Gs~n~~~~---~~~c~-~~~~~~~~~~~G~~-~~~ 192 (759)
T PRK15488 119 WDEAYQEIAAKLNAIKQQHGPESVAFSSK-SGSLSSHLFHLATAFGSPNTFTH---ASTCP-AGYAIAAKVMFGGK-LKR 192 (759)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEeecC-CCcHHHHHHHHHHHcCCCCCCCc---ccccc-chhhhhHHhhcCCC-ccC
Confidence 4677888887776432 22333322 11122356788888887632111 11111 11111110011111 123
Q ss_pred hhhcCCEEEEecCccCcccc-Cc---cc-cc-cCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHh
Q 040733 332 AVNECDLLLAAGVRFNERMT-SK---LE-DF-ATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILE 399 (643)
Q Consensus 332 ~l~~aDlvL~vG~~~~~~~t-~~---~~-~~-~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~ 399 (643)
-++++|+||++|+...+-.. .. +. .. ....|+|.||+........-...+.|. .|...++..+...++
T Consensus 193 D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~i~PGtD~al~~al~~~ii~ 268 (759)
T PRK15488 193 DLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHAIRPGTDLAVVLALCHVLIE 268 (759)
T ss_pred CHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeeccCCCcHHHHHHHHHHHHHH
Confidence 46899999999988643111 11 11 11 245799999998887665322223333 465555444434443
No 377
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=56.76 E-value=65 Score=32.60 Aligned_cols=107 Identities=18% Similarity=0.054 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhC---CcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCC---CCCCccCHHHHhhc
Q 040733 119 GIFAAEGYARSSG---TPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGT---DAFQEIPVVEVTRY 189 (643)
Q Consensus 119 A~~~A~Gyar~sg---~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~---~~~Q~~d~~~~~~~ 189 (643)
+.-+|.|.|.+.. +..-+++..|=|..+ ..-++..|...++|.|++.-+.....+.. ......|..++++.
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a 189 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEA 189 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHH
Confidence 3356666665532 223334445666666 57788899999998444443333221111 11122355667766
Q ss_pred cceeeeEeC--CcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 190 MTKHNYLVL--DVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 190 ~tk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+--...++. +.+++...+++|.+ .+.+|+.|++-..
T Consensus 190 ~G~~~~~v~G~d~~~l~~al~~a~~----~~~~P~~I~~~t~ 227 (255)
T cd02012 190 FGWNVIEVDGHDVEEILAALEEAKK----SKGKPTLIIAKTI 227 (255)
T ss_pred cCCeEEEECCCCHHHHHHHHHHHHH----cCCCCEEEEEEee
Confidence 643344565 55555555555543 2257999887543
No 378
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=55.27 E-value=20 Score=32.54 Aligned_cols=94 Identities=29% Similarity=0.461 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHH--HHHHHhh----CC--CeEEecCChhH--HHHH----HHHHHHH-----hC
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIE--IHQSLTR----SN--IRSILPRHEQG--GIFA----AEGYARS-----SG 131 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~--l~~al~~----~~--i~~i~~~hE~~--A~~~----A~Gyar~-----sg 131 (643)
..++.+++.+.+-|.=++||.-|+.... +...+.. .+ +..+ +.+..+ +... -.+|++. ..
T Consensus 23 ~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (138)
T PF13580_consen 23 KAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAI-ALNDDALTAISNDLEYDEGFARQLLALYDI 101 (138)
T ss_dssp HHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEE-ETTSTHHHHHHHHTTGGGTHHHHHHHHTT-
T ss_pred HHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCccccccc-ccccchHhhhhcccchhhHHHHHHHHHcCC
Confidence 6889999999999999999997664332 2222221 12 2233 333322 1111 1233332 24
Q ss_pred CcE---EEEEccchhhHHHHHHHHHhhhCCCCEEEEeC
Q 040733 132 TPG---VCLVSSGPGVTNIMTGLMDAYSDSIPILAITG 166 (643)
Q Consensus 132 ~~g---v~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg 166 (643)
+|+ +++.+|| ...|.+.++..|+.-+.++|.|||
T Consensus 102 ~~gDvli~iS~SG-~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 102 RPGDVLIVISNSG-NSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -TT-EEEEEESSS--SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCEEEEECCCC-CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 443 3333333 457888999999999999999986
No 379
>PRK13761 hypothetical protein; Provisional
Probab=54.38 E-value=22 Score=34.94 Aligned_cols=139 Identities=14% Similarity=0.173 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCC---------CCCCC-CCCCcccc----
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGL---------GLFPC-TDELCLRM---- 320 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gk---------g~~~~-~hpl~lG~---- 320 (643)
+...++..++.+|.-|++|||=+-+... -+.+++.+|++.+|+++=..+.-+ ..+-+ +-...+|.
T Consensus 52 ~A~~A~raAaA~LLlA~~PVISVNGN~AAL~p~eiveLa~~~~A~iEVNLF~RT~eR~~~I~~~l~~~Ga~~vlG~~~~~ 131 (248)
T PRK13761 52 SALEAERAAAALLLLAKHPVISVNGNTAALVPEEIVELAEALNAKLEVNLFYRTEERVEKIAEVLREHGAKEVLGTDEDA 131 (248)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEcchHHhhChHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHcCCceeeCCCCcC
Confidence 3556777888888899999998866443 567899999999999973321100 00000 00001111
Q ss_pred --cCCCCcH-H-HHHhhhcCCEEEEecCccCccccCcccccc-CCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHH
Q 040733 321 --VGMFGTV-Y-ANYAVNECDLLLAAGVRFNERMTSKLEDFA-TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMN 395 (643)
Q Consensus 321 --~g~~~~~-~-~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~-~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~ 395 (643)
.|..... . ..+=+..||+||+==.. +++. +.+. -.+++|.||.+|-.- ....+++.|+..+-.++..|.
T Consensus 132 ~ip~L~~~R~~v~~~GIy~ADVVLVPLED-GDR~----EaL~~mGK~VI~IDLNPLSR-Tar~A~itIVDni~RA~p~m~ 205 (248)
T PRK13761 132 RIPGLDHERAKVSEDGIYSADVVLVPLED-GDRT----EALVKMGKTVIAIDLNPLSR-TARTATITIVDNITRAVPNMT 205 (248)
T ss_pred cCCCCCCccceECcccceeccEEEecCCC-CcHH----HHHHHcCCeEEEEeCCCccc-ccccCceeeehhHHHHHHHHH
Confidence 1111110 0 01235678888864111 1111 1221 246799999988542 234688999988888888877
Q ss_pred HHHhh
Q 040733 396 MILES 400 (643)
Q Consensus 396 ~~l~~ 400 (643)
+....
T Consensus 206 ~~~~e 210 (248)
T PRK13761 206 EYARE 210 (248)
T ss_pred HHHHH
Confidence 65544
No 380
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=54.29 E-value=55 Score=39.35 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=40.2
Q ss_pred hhhcCCEEEEecCccCcccc---Cccc-c-c-cCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHhh
Q 040733 332 AVNECDLLLAAGVRFNERMT---SKLE-D-F-ATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILES 400 (643)
Q Consensus 332 ~l~~aDlvL~vG~~~~~~~t---~~~~-~-~-~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~~ 400 (643)
-+.++|+||++|+...+... ..+. . . ...+|+|.||+......+.-...+.|. .|...++..+...++.
T Consensus 203 Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ta~~ad~~l~irPGtD~al~~am~~~ii~~ 279 (830)
T PRK13532 203 DIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRSFELADNGIIFTPQTDLAILNYIANYIIQN 279 (830)
T ss_pred HHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCchhHhcCeeeccCCCCcHHHHHHHHHHHHHC
Confidence 46899999999998643211 1111 1 1 135799999987665544222223333 5776666555555543
No 381
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.25 E-value=2.3e+02 Score=28.15 Aligned_cols=149 Identities=9% Similarity=0.059 Sum_probs=81.5
Q ss_pred CCcHHHHHHHHHHHC--CCCEEEEccCCC-------cHHHHHHHhhCCCeEEecC----ChhHHHHHHHHHHHHhCCcEE
Q 040733 69 PRKGADIIVEALERQ--GVTTVFAYPGGA-------SIEIHQSLTRSNIRSILPR----HEQGGIFAAEGYARSSGTPGV 135 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~--GV~~vFg~PG~~-------~~~l~~al~~~~i~~i~~~----hE~~A~~~A~Gyar~sg~~gv 135 (643)
+..++...++.|.+. |-+.|.-+-|.. ...+.+++.+.+++.+... +...+.-.+..+-+....+-+
T Consensus 109 ~~~~g~~aa~~l~~~~~g~~~i~~~~g~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 188 (274)
T cd06311 109 NYGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDNERVDAFDAAIAKYPIKILDRQYANWNRDDAFSVMQDLLTKFPKIDA 188 (274)
T ss_pred cHHHHHHHHHHHHHHhCCCCeEEEEECCCCcchhHHHHHHHHHHhhCCcEEEeccCCCCcHHHHHHHHHHHHHhCCCcCE
Confidence 456777888888887 766665554432 2445556666666554321 112222223333223345778
Q ss_pred EEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccc-eeeeE-eCCcCcHHHHHHHHHHH
Q 040733 136 CLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT-KHNYL-VLDVDDIPRIIKEAFFI 213 (643)
Q Consensus 136 ~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~t-k~~~~-v~~~~~i~~~l~~A~~~ 213 (643)
++++...-+..++.++.++-... -+.+++++.... ..+..+.=. ..... ..++......+..+.+.
T Consensus 189 i~~~~d~~a~g~~~al~~~g~~~-~~~ivg~d~~~~-----------~~~~i~~g~~~~~~~v~~~~~~~~~~~~~~~~~ 256 (274)
T cd06311 189 VWAHDDDMAVGVLAAIKQAGRTD-IKFVVGGAGSKD-----------MIKMIMDGDPLIPADVLYPPSMIASAIDLTVAL 256 (274)
T ss_pred EEECCCcHHHHHHHHHHHcCCCC-CceEEEeCCCHH-----------HHHHHHCCCCceeEEEecCHHHHHHHHHHHHHH
Confidence 88887777777777777764432 344454432211 112222110 11222 23455666777777777
Q ss_pred hhcCCCCeEEEEcccc
Q 040733 214 ATSGRPGPVLIDIPVD 229 (643)
Q Consensus 214 A~s~~~GPV~i~iP~D 229 (643)
...+.++|.++.||..
T Consensus 257 ~~g~~~~~~~~~v~~~ 272 (274)
T cd06311 257 FQGGMPGLGQFIIPAR 272 (274)
T ss_pred HcCCCCCCcceeccce
Confidence 7777778888888754
No 382
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=54.14 E-value=42 Score=39.42 Aligned_cols=108 Identities=14% Similarity=0.066 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhC--CCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhh
Q 040733 257 DELALRQTLKLIVES--KNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAV 333 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A--krPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l 333 (643)
.+++++.+++.|++. ++..+++|.... +....+.+|++.+|.+.+.+...-..+.. ...+.+ ..+... +-+
T Consensus 289 WdEAl~~iA~kL~~~~~~~ia~i~g~~~~~E~~~~lkkl~~~lGs~nid~~~~~~~~~~---~~~~~~-~~~~si--~dI 362 (687)
T PRK09130 289 WDEAFAAIAAKIKGTPGEKIAAIAGDLADVESMFALKDLMQKLGSSNLDCRQDGAKLDP---SLRASY-LFNTTI--AGI 362 (687)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCccccccchhhhhh---hhhccC-CCCCCH--HHH
Confidence 478888889888875 456777777654 55567899999999887654321001110 001111 111111 236
Q ss_pred hcCCEEEEecCccCccc---cCcc-ccccCC-ceEEEEcCCc
Q 040733 334 NECDLLLAAGVRFNERM---TSKL-EDFATR-AKIVHIDIDS 370 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~---t~~~-~~~~~~-~~iI~Id~d~ 370 (643)
+++|+||++|+...+-. ..++ ..+..+ .+++.||+..
T Consensus 363 e~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~ 404 (687)
T PRK09130 363 EEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQA 404 (687)
T ss_pred HhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcc
Confidence 89999999999864321 1112 123334 4899998754
No 383
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=53.88 E-value=66 Score=30.06 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=57.1
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKS 568 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~ 568 (643)
.++.|.|.++... ++++.....-. .+....+.+...++ ++.+|+....++.. +. ... .
T Consensus 61 ~vg~a~GlA~~G~-~pi~~~~~~f~-~~a~~~~~~~~~~~-~~~~v~~~~~g~~~---------g~-~G~---------t 118 (168)
T smart00861 61 MVGFAAGLALAGL-RPVVAIFFTFF-DRAKDQIRSDGAMG-RVPVVVRHDSGGGV---------GE-DGP---------T 118 (168)
T ss_pred HHHHHHHHHHcCC-CcEEEeeHHHH-HHHHHHHHHhCccc-CCCEEEEecCcccc---------CC-CCc---------c
Confidence 5677888887753 66666554321 23333455555565 44455544332110 00 000 0
Q ss_pred CCCC-CHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC-CCcEEEEE
Q 040733 569 EIFP-DMLKFAEACGIPAARVTKKKDVRAAIQLMLET-PGPYLLDV 612 (643)
Q Consensus 569 ~~~~-d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~-~gp~lIeV 612 (643)
.+.. |..-+..--|+..+...+++|++..++.+++. ++|.+|-+
T Consensus 119 H~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~~~~p~~i~~ 164 (168)
T smart00861 119 HHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDGPPVIRL 164 (168)
T ss_pred ccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCCEEEEe
Confidence 1223 33334433467788889999999999999975 67866643
No 384
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=53.73 E-value=34 Score=40.76 Aligned_cols=135 Identities=10% Similarity=0.096 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCccc---ccCCCCcHHHHHhh
Q 040733 258 ELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLR---MVGMFGTVYANYAV 333 (643)
Q Consensus 258 ~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG---~~g~~~~~~~~~~l 333 (643)
+.+++++++.|++++ .|..++.+. +..-.+.+|++.+|.+.+..- ++- + ++...+ ..|...+.. -+-+
T Consensus 297 e~A~deA~e~lk~~~--aI~~S~~~TNEE~YllqKLar~lgtnnvD~~-aR~-~---~~~~~~l~~~~G~~~t~s-l~DI 368 (819)
T PRK08493 297 EKAFKEAVEAFKEAK--AIKFNSFITNEEALILQRLKKKFGLKLINEE-ALK-F---QQFLKVFSEVSGKSYSAN-LEDI 368 (819)
T ss_pred HHHHHHHHHHHhhCC--EEEecCCCCHHHHHHHHHHHHHhCCCCccch-hhh-h---hHHHHHHHHhcCCCCCCC-HHHH
Confidence 678899999998765 333344443 445568889988887765321 111 1 111111 012111111 2237
Q ss_pred hcCCEEEEecCccCcccc---Cccc-cc-cCCceEEEEcCCcccccCCC-CCCeeE---ecCHHHHHHHHHHHHhh
Q 040733 334 NECDLLLAAGVRFNERMT---SKLE-DF-ATRAKIVHIDIDSNEIGKVK-LPDVSI---CADAKLVFNRMNMILES 400 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~t---~~~~-~~-~~~~~iI~Id~d~~~i~~~~-~~~~~i---~~D~~~~L~~L~~~l~~ 400 (643)
.++|+||++|+...+-.. ..+. .. ..++++|.||+.....-..+ ..++.+ .+.-..+|..|+..+-.
T Consensus 369 ~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~~~~~a~~~~~l~~~PGtd~all~~ll~~ii~ 444 (819)
T PRK08493 369 KTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFFCITHEVGAEEIILYFLLKKFLE 444 (819)
T ss_pred hhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchhhhhhhhcceEeecCCCcHHHHHHHHHHHHHH
Confidence 899999999998643221 1211 11 13568999987665442221 222333 23344456666555543
No 385
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=53.55 E-value=62 Score=33.10 Aligned_cols=93 Identities=14% Similarity=0.092 Sum_probs=54.6
Q ss_pred CcEEEEEccchhhH-H---HHHHHHHhhhCCCC---EEEEeCCCcccccCCCC-CC--ccCHHHHhhccceeeeEe--CC
Q 040733 132 TPGVCLVSSGPGVT-N---IMTGLMDAYSDSIP---ILAITGQVSQKLLGTDA-FQ--EIPVVEVTRYMTKHNYLV--LD 199 (643)
Q Consensus 132 ~~gv~~~t~GpG~~-N---~~~gl~~A~~~~vP---vlvItg~~~~~~~g~~~-~Q--~~d~~~~~~~~tk~~~~v--~~ 199 (643)
+..|+++..|=|++ | ..-++-=|...+.| +|+|.-+.... +.+.. .| ..+..+..+.+--....| .+
T Consensus 139 ~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g-~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D 217 (265)
T cd02016 139 DKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIG-FTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDD 217 (265)
T ss_pred CCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-EEecHHHhcccccHHHHHeecCCCEEEEcCCC
Confidence 35777777786663 2 33344445667777 88887542211 11100 00 112233333332233344 46
Q ss_pred cCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 200 VDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 200 ~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
++.+.+++++|++.++.+. ||+.|++
T Consensus 218 ~~aV~~a~~~A~~~~r~g~-gp~lIe~ 243 (265)
T cd02016 218 PEAVVRATRLALEYRQKFK-KDVVIDL 243 (265)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCEEEEE
Confidence 7788899999999999886 9999987
No 386
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=52.82 E-value=58 Score=34.56 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCch----hhHHHHHHHHHHhCCceeecC
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCL----NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~----~~~~~l~~lae~lg~PV~tt~ 304 (643)
+.+.++.+ +...-|.+|+.|.|.- ...+.|.++.++ |+||+.+-
T Consensus 224 ~~~~l~~~---~~~~~~GiVl~~~G~Gn~p~~~~~~l~~a~~~-Gi~VV~~S 271 (336)
T TIGR00519 224 SPDIIRNY---LSKGYKGIVIEGTGLGHAPQNKLQELQEASDR-GVVVVMTT 271 (336)
T ss_pred CHHHHHHH---HhCCCCEEEEeeECCCCCCHHHHHHHHHHHHC-CCEEEEeC
Confidence 44555433 3334589999888764 234556666655 99997653
No 387
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=50.80 E-value=1.3e+02 Score=34.19 Aligned_cols=212 Identities=16% Similarity=0.111 Sum_probs=114.8
Q ss_pred ccCCCCC-CcHHHHHHHHHHHCC--CCEEEEccCC-CcHHHHHHHhhCC-CeEEe-cCChhHHHHHHHHHHHHhCCcEEE
Q 040733 63 RFAPDKP-RKGADIIVEALERQG--VTTVFAYPGG-ASIEIHQSLTRSN-IRSIL-PRHEQGGIFAAEGYARSSGTPGVC 136 (643)
Q Consensus 63 ~~~~~~~-~~~a~~lv~~L~~~G--V~~vFg~PG~-~~~~l~~al~~~~-i~~i~-~~hE~~A~~~A~Gyar~sg~~gv~ 136 (643)
.|.+..+ ........++|..++ .+++.|.-|+ .+..+.|-+.++- -|||. ..-|++++..|.|.|- -|+
T Consensus 312 ~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~mv~ia~G~a~-~g~---- 386 (632)
T KOG0523|consen 312 TYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQNMVGIANGIAC-RGR---- 386 (632)
T ss_pred ccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhhhHHhhhchhc-CCC----
Confidence 4666555 666777777887776 4577777774 4555666665543 56663 4679999999999873 343
Q ss_pred EEccchhhHHHHH----HHHHhhhCCCCEEEEeCCCcccccCCC--CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHH
Q 040733 137 LVSSGPGVTNIMT----GLMDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEA 210 (643)
Q Consensus 137 ~~t~GpG~~N~~~----gl~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A 210 (643)
..-.+-=++|.++ .+--+..++.+++.+.....- ..|.+ .+|-+....+||.+.. ..+..|.|- ..+.+|
T Consensus 387 ~~Pf~~tf~~F~trA~dqvr~~a~s~~~v~~v~th~~i-~~GeDGPth~~iedlA~frsiPn--~~v~~PaD~-~et~~a 462 (632)
T KOG0523|consen 387 TIPFCGTFAAFFTRAFDQVRMGALSQANVIYVATHDSI-GLGEDGPTHQPIEDLAMFRSIPN--MIVFRPADG-NETENA 462 (632)
T ss_pred ccchhHHHHHHHHHhhhheeehhhccCCcEEEEEeccc-cccCCCcccccHHHHHHHHhCCC--ceEEecCch-HHHHHH
Confidence 1222233445444 333334455555555543332 23444 3566777889998874 333344442 234566
Q ss_pred HHHhhcCCCCeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHH
Q 040733 211 FFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEE 288 (643)
Q Consensus 211 ~~~A~s~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~ 288 (643)
+..|..-...|.-+-.+..- ++.+.. .....+.+.-=.|.+.+-=|+|+|.|+. .+-+.
T Consensus 463 v~~Aa~~~~~p~i~~~~r~~--------------~~~~~~-----~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~A 523 (632)
T KOG0523|consen 463 VATAANTKGTPSIRTLSRQN--------------LPIYNN-----TEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEA 523 (632)
T ss_pred HHHHHhcCCCeeEEEecCcc--------------ccccCC-----CchhhhccccEEEecCCCCEEEEeccHHHHHHHHH
Confidence 77766555457766665421 111110 1112222222123334445888999875 34444
Q ss_pred HHHHHHH-hCCceee
Q 040733 289 LRKFVGL-TGIPVTC 302 (643)
Q Consensus 289 l~~lae~-lg~PV~t 302 (643)
...|.|+ +++-|+.
T Consensus 524 A~~L~~~gi~vrVvd 538 (632)
T KOG0523|consen 524 AELLSEDGIKVRVVD 538 (632)
T ss_pred HHHHHhcCceEEEec
Confidence 4445533 5555553
No 388
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=50.55 E-value=20 Score=38.53 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=9.1
Q ss_pred hCCCcEEEEEEeCC
Q 040733 603 ETPGPYLLDVMVSY 616 (643)
Q Consensus 603 ~~~gp~lIeV~v~~ 616 (643)
+.+...+||.+..-
T Consensus 159 ~~g~l~iVDaVsS~ 172 (383)
T COG0075 159 EHGALLIVDAVSSL 172 (383)
T ss_pred HcCCEEEEEecccC
Confidence 35667777777653
No 389
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=50.04 E-value=31 Score=40.30 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHh-----CCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCccc---ccCCCCcHH
Q 040733 257 DELALRQTLKLIVE-----SKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLR---MVGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~-----AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG---~~g~~~~~~ 328 (643)
-+++++.+++.|++ .++-.++.|.+.. ......|+..+|.|-+....+ +... ....+ .+|......
T Consensus 75 WDEAld~IA~kL~~i~~~gp~~ia~~~g~~~~--~~l~~~f~~~lGt~n~~~~~~---~C~~-~~~~a~~~~~G~~~~~~ 148 (679)
T cd02763 75 WEEAFSIATKRLKAARATDPKKFAFFTGRDQM--QALTGWFAGQFGTPNYAAHGG---FCSV-NMAAGGLYSIGGSFWEF 148 (679)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCCccH--HHHHHHHHHhcCCCCcCCCCC---cchH-HHHHHHHHhhCCCCCCC
Confidence 46777777777754 2334555565432 334566777777764432211 1100 00010 112110001
Q ss_pred HHHhhhcCCEEEEecCccCccc---cCcccc-ccCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERM---TSKLED-FATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~---t~~~~~-~~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~ 399 (643)
...-+.+||+||++|+...... ...+.. ....+|+|.||+........-...+.|. .|...++..+...++
T Consensus 149 ~~~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl~irPGTD~aL~lal~~~Li~ 225 (679)
T cd02763 149 GGPDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVPIKPGTDGAFILALAHELLK 225 (679)
T ss_pred ChhHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeecCcCCCcHHHHHHHHHHHHHH
Confidence 1234789999999998532111 011111 1235689999887776543322223333 455555544444444
No 390
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=49.58 E-value=1.1e+02 Score=36.77 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=39.1
Q ss_pred hhhcCCEEEEecCccCccccC---ccc-cc--cCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHhh
Q 040733 332 AVNECDLLLAAGVRFNERMTS---KLE-DF--ATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILES 400 (643)
Q Consensus 332 ~l~~aDlvL~vG~~~~~~~t~---~~~-~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~~ 400 (643)
-+.++|+||++|....+.... .+. .. ...+|+|.||+........-.-.+.|. .|...++..+...++.
T Consensus 203 Di~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDPr~t~ta~~Ad~~l~irPGTD~AL~lam~~~ii~~ 279 (830)
T TIGR01706 203 DFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLSTFTHRSFDLADIGIIFKPQTDLAILNYIANYIIQN 279 (830)
T ss_pred HHhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECCCCCchhHHhCeeeccCCCCHHHHHHHHHHHHHHC
Confidence 468999999999986532211 111 11 135799999877665543211123333 5776666555444443
No 391
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=49.13 E-value=1.6e+02 Score=31.95 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCchh------hHHHHHHHHHHhC
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCLN------SSEELRKFVGLTG 297 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~~------~~~~l~~lae~lg 297 (643)
.+.+.+++++++|.++|+++|+.|.|... ....+.+++..++
T Consensus 220 v~~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~li~~l~ 267 (415)
T cd02761 220 IPAETILELAERLKNAKFGVIFWGLGLLPSRGAHRNIEAAIRLVKALN 267 (415)
T ss_pred cCHHHHHHHHHHHHhCCceEEEEeccccccCCccHHHHHHHHHHHHhC
Confidence 35678999999999999999999987651 2344566666664
No 392
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=48.90 E-value=1.7e+02 Score=28.27 Aligned_cols=89 Identities=12% Similarity=0.190 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEE-Eccc--hhhHHH
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCL-VSSG--PGVTNI 147 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~-~t~G--pG~~N~ 147 (643)
..++.+++.+++.||+.|+.+-|-...... .+ .++..+-+..... ..-+..| +-+ .-.| .|++.+
T Consensus 34 e~a~~vld~a~~~gv~~iitLgG~~~~~~~---tr--p~V~~~at~~el~----~~l~~~g---~~~~~~~g~i~G~~gl 101 (188)
T TIGR00162 34 ELVNAIIDVAKKYGARMIYTLGGYGVGKLV---EE--PYVYGAATSPELV----EELKEHG---VKFREPGGGIIGASGL 101 (188)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcCCCCC---CC--CceEEEeCCHHHH----HHHHhcC---CeeecCCCccccHHHH
Confidence 588999999999999999999885432111 12 2233332222221 1111111 111 1111 133333
Q ss_pred HHHHHHhhhCCCCEEEEeCCCccccc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLL 173 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~ 173 (643)
+ +..|...++|-+.|.+.++....
T Consensus 102 L--l~~a~~~gi~ai~L~~e~p~y~p 125 (188)
T TIGR00162 102 L--LGVSELEGIPGACLMGETPGYMI 125 (188)
T ss_pred H--HHHHHHCCCCeEEEEEeCCCCCC
Confidence 3 34567889999999998886543
No 393
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=48.86 E-value=74 Score=37.92 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHhCCC-----cEE-EE-c---CCch-hhHHHHHHHHHHhCCceeecCCCCCCCCC-----CCCCcccc
Q 040733 257 DELALRQTLKLIVESKN-----PVL-CV-G---GGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPC-----TDELCLRM 320 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Akr-----PvI-l~-G---~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~-----~hpl~lG~ 320 (643)
-+++++.+++.|++.++ -+. .. | .|.. .......+|+..+|-+.-+. +.+.. ..+..+|.
T Consensus 76 WDEAl~~IA~kl~~i~~~~G~~si~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~g~ 151 (770)
T TIGR00509 76 WDEALDLVAEELKRVRKTHGPSAIFAGSYGWKSAGRLHNASTLLQRMLNLLGGYVGHA----GDYSTGAAQVIMPHVVGD 151 (770)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhheecccCcccCCcccccHHHHHHHHHhcCCCcCCC----CCcchhhHhhccCceeec
Confidence 56788888887765331 222 22 2 1111 22344678888887543211 11111 01222332
Q ss_pred cCCCCcH-HHHHhhhcCCEEEEecCccCcccc-----------Cccc-cccCCceEEEEcCCcccccCCC-CCCeeEe--
Q 040733 321 VGMFGTV-YANYAVNECDLLLAAGVRFNERMT-----------SKLE-DFATRAKIVHIDIDSNEIGKVK-LPDVSIC-- 384 (643)
Q Consensus 321 ~g~~~~~-~~~~~l~~aDlvL~vG~~~~~~~t-----------~~~~-~~~~~~~iI~Id~d~~~i~~~~-~~~~~i~-- 384 (643)
....+.. .....+.+||+||++|+...+... ..+. .-...+|+|.||+......... .-.+.|.
T Consensus 152 ~~~~g~~~~~~~~~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~~aaD~~l~irPG 231 (770)
T TIGR00509 152 MEVYEQQTTWPVILENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAEFFGAEWIPPNPQ 231 (770)
T ss_pred ccccCCcCCcHHHHhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchhhccCeEeCcCCC
Confidence 1111110 112236899999999998643211 1111 1124579999999887765432 1223443
Q ss_pred cCHHHHHHHHHHHHhh
Q 040733 385 ADAKLVFNRMNMILES 400 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~ 400 (643)
.|...++..+...+++
T Consensus 232 TD~AL~lam~~~ii~e 247 (770)
T TIGR00509 232 TDVALMLGLAHTLVTE 247 (770)
T ss_pred cHHHHHHHHHHHHHHc
Confidence 5776666555545544
No 394
>PRK15482 transcriptional regulator MurR; Provisional
Probab=48.84 E-value=54 Score=33.73 Aligned_cols=97 Identities=16% Similarity=0.116 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhh
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVN 334 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~ 334 (643)
.+.+.+++++++|.+|+| +.++|.|.. .....+....-++|.++.... +.|.. ......+.
T Consensus 120 id~~~l~~~~~~i~~A~~-I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~-------d~~~~----------~~~~~~~~ 181 (285)
T PRK15482 120 FDYARLQKIIEVISKAPF-IQITGLGGSALVGRDLSFKLMKIGYRVACEA-------DTHVQ----------ATVSQALK 181 (285)
T ss_pred cCHHHHHHHHHHHHhCCe-eEEEEeChhHHHHHHHHHHHHhCCCeeEEec-------cHhHH----------HHHHhcCC
Confidence 367889999999999987 778888765 334445554556787775421 11110 11112356
Q ss_pred cCCEEEEecCccCccccCcc-cc-ccCCceEEEEcCCc
Q 040733 335 ECDLLLAAGVRFNERMTSKL-ED-FATRAKIVHIDIDS 370 (643)
Q Consensus 335 ~aDlvL~vG~~~~~~~t~~~-~~-~~~~~~iI~Id~d~ 370 (643)
+-|++|++..+-....+... .. -..++++|-|...+
T Consensus 182 ~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~ 219 (285)
T PRK15482 182 KGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLA 219 (285)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 77999999654211111111 11 12356788886544
No 395
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=48.36 E-value=3e+02 Score=28.92 Aligned_cols=98 Identities=18% Similarity=0.173 Sum_probs=65.8
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCC--------cHHHHHHHhhCCCe----EEec--CChhHHHHHHHHHHHHhCC-
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGA--------SIEIHQSLTRSNIR----SILP--RHEQGGIFAAEGYARSSGT- 132 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~--------~~~l~~al~~~~i~----~i~~--~hE~~A~~~A~Gyar~sg~- 132 (643)
.+..++..+++.|.+.|-+++--+-|.. ...+.+++.+.++. ++.. ..+..+..++.-+-.....
T Consensus 158 Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~~~~g~~~~~~ll~~~~~~ 237 (333)
T COG1609 158 DNFAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVEGDFSEESGYEAAERLLARGEPR 237 (333)
T ss_pred ChHHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEEecCCChHHHHHHHHHHHhcCCCC
Confidence 3568999999999999999877776652 24567788877743 2221 1233333333333322334
Q ss_pred cEEEEEccchhhHHHHHHHHHhhhCCCCE-EEEeC
Q 040733 133 PGVCLVSSGPGVTNIMTGLMDAYSDSIPI-LAITG 166 (643)
Q Consensus 133 ~gv~~~t~GpG~~N~~~gl~~A~~~~vPv-lvItg 166 (643)
|-+++|.+.--+..++.++.+.-.. +|= |.|.|
T Consensus 238 ptAif~~nD~~Alg~l~~~~~~g~~-vP~disviG 271 (333)
T COG1609 238 PTAIFCANDLMALGALRALRELGLR-VPEDLSVIG 271 (333)
T ss_pred CcEEEEcCcHHHHHHHHHHHHcCCC-CCCeeEEEE
Confidence 8899999999888888888888777 884 55554
No 396
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=48.35 E-value=59 Score=38.90 Aligned_cols=113 Identities=15% Similarity=0.067 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE-cCCch-hhHHHHHHHHH-HhCCceeecCCCCCCCCCCCCCccc--ccCCCCcHHHHH
Q 040733 257 DELALRQTLKLIVESKNPVLCV-GGGCL-NSSEELRKFVG-LTGIPVTCTTMGLGLFPCTDELCLR--MVGMFGTVYANY 331 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~-G~g~~-~~~~~l~~lae-~lg~PV~tt~~gkg~~~~~hpl~lG--~~g~~~~~~~~~ 331 (643)
-+++++.+++.|++.+..+-+. |+... +..-.+.+|+. .+|.+-+... ++. ......-++. ..|...... .+
T Consensus 296 WdEAld~ia~kL~~i~~~ia~~~s~~~t~Ee~y~~~kl~r~~lgt~nid~~-~r~-~~~~~~~~~~~~~~g~~~~~~-~~ 372 (797)
T PRK07860 296 WSEALAVAARGLAAARGRVGVLVGGRLTVEDAYAYAKFARVALGTNDIDFR-ARP-HSAEEADFLAARVAGRGLGVT-YA 372 (797)
T ss_pred HHHHHHHHHHHHHhhhccEEEEeCCCCCHHHHHHHHHHHHHhcCCCccccc-ccc-ccchHHHHHHhhccCCCCCCC-HH
Confidence 4788888899888876644444 44333 22234567776 4666543211 110 0000000000 011110111 23
Q ss_pred hhhcCCEEEEecCccCcccc---Cccc-cc-cCCceEEEEcCCccc
Q 040733 332 AVNECDLLLAAGVRFNERMT---SKLE-DF-ATRAKIVHIDIDSNE 372 (643)
Q Consensus 332 ~l~~aDlvL~vG~~~~~~~t---~~~~-~~-~~~~~iI~Id~d~~~ 372 (643)
-++++|+||++|+...+... ..+. .. ...+|+|.||+....
T Consensus 373 Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~ 418 (797)
T PRK07860 373 DLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATR 418 (797)
T ss_pred HHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCch
Confidence 47899999999998654221 1121 11 235699999876544
No 397
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=48.22 E-value=76 Score=34.26 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=37.4
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
++.+|+||+.+. .+++..+-=+||.+-.--|..+.-..+|+++++.+..+
T Consensus 60 A~~~a~GAs~aG--~Ra~TaTSg~Gl~lm~E~~~~a~~~e~P~Viv~~~R~g 109 (376)
T PRK08659 60 SMAAVIGASWAG--AKAMTATSGPGFSLMQENIGYAAMTETPCVIVNVQRGG 109 (376)
T ss_pred HHHHHHhHHhhC--CCeEeecCCCcHHHHHHHHHHHHHcCCCEEEEEeecCC
Confidence 688999999884 56666665666665555577777778999999998765
No 398
>PRK13685 hypothetical protein; Provisional
Probab=48.13 E-value=1e+02 Score=32.38 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=53.4
Q ss_pred CeEEEEecCccccCC---------HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCC
Q 040733 503 AIVVDIDGDGSFIMN---------LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPD 573 (643)
Q Consensus 503 ~~Vv~i~GDGsf~m~---------~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d 573 (643)
..+|.+.-||.-.-. ......+.+.+++|-+|=+-+...++. +.+..... .....-
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~-------~~g~~~~~--------~~d~~~ 258 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVE-------INGQRQPV--------PVDDES 258 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcC-------cCCceeee--------cCCHHH
Confidence 356778888865421 123455667888988887766432221 01110000 011124
Q ss_pred HHHHHhHCCCCEEEeCChhHHHHHHHHHH
Q 040733 574 MLKFAEACGIPAARVTKKKDVRAAIQLML 602 (643)
Q Consensus 574 ~~~lA~a~G~~~~~V~~~~eL~~al~~al 602 (643)
..++|+.-|+.++.+++.+||.+++++.-
T Consensus 259 L~~iA~~tgG~~~~~~~~~~L~~if~~I~ 287 (326)
T PRK13685 259 LKKIAQLSGGEFYTAASLEELRAVYATLQ 287 (326)
T ss_pred HHHHHHhcCCEEEEcCCHHHHHHHHHHHH
Confidence 78999999999999999999999988754
No 399
>PRK13938 phosphoheptose isomerase; Provisional
Probab=48.07 E-value=85 Score=30.51 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHH--Hh-----hC-CCeEEecCChhHHHHHHHH----HH----H---Hh-
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQS--LT-----RS-NIRSILPRHEQGGIFAAEG----YA----R---SS- 130 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~a--l~-----~~-~i~~i~~~hE~~A~~~A~G----ya----r---~s- 130 (643)
..++.+++.|++.|-=++||+-|+....-..+ |. .. ++..+....+ .+...|.+ |. + ..
T Consensus 33 ~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~-~~~~~a~~nd~~~~~~~~~~~~~~~ 111 (196)
T PRK13938 33 AIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHAN-SSHLTAVANDYDYDTVFARALEGSA 111 (196)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCC-hHHHHHhhccccHHHHHHHHHHhcC
Confidence 57888888899888888999877654433332 21 01 1222222111 22222222 22 1 11
Q ss_pred CCcEEEEEccchh-hHHHHHHHHHhhhCCCCEEEEeCCCcc
Q 040733 131 GTPGVCLVSSGPG-VTNIMTGLMDAYSDSIPILAITGQVSQ 170 (643)
Q Consensus 131 g~~gv~~~t~GpG-~~N~~~gl~~A~~~~vPvlvItg~~~~ 170 (643)
.+--++++-|..| ..+.+.++..|...+.|+|.||+....
T Consensus 112 ~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s 152 (196)
T PRK13938 112 RPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGG 152 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 2223444444444 667889999999999999999986543
No 400
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.82 E-value=49 Score=27.97 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=33.7
Q ss_pred EEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcH--HHHHhhhcCCEEEEecC
Q 040733 275 VLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTV--YANYAVNECDLLLAAGV 344 (643)
Q Consensus 275 vIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~--~~~~~l~~aDlvL~vG~ 344 (643)
++++|+-. .....+++++++.|.-+..- |.-+..... .....+.++|+||++=.
T Consensus 2 vliVGG~~-~~~~~~~~~~~~~G~~~~~h---------------g~~~~~~~~~~~l~~~i~~aD~VIv~t~ 57 (97)
T PF10087_consen 2 VLIVGGRE-DRERRYKRILEKYGGKLIHH---------------GRDGGDEKKASRLPSKIKKADLVIVFTD 57 (97)
T ss_pred EEEEcCCc-ccHHHHHHHHHHcCCEEEEE---------------ecCCCCccchhHHHHhcCCCCEEEEEeC
Confidence 56677622 24567899999999887643 111111111 24567899999999843
No 401
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=47.82 E-value=5 Score=41.04 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHCCCCEEEEccCC--CcHHHHHHHhhCCCeEEe----------cCChhHHHHHHHHHHHHhCC-cEEEEE
Q 040733 72 GADIIVEALERQGVTTVFAYPGG--ASIEIHQSLTRSNIRSIL----------PRHEQGGIFAAEGYARSSGT-PGVCLV 138 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~--~~~~l~~al~~~~i~~i~----------~~hE~~A~~~A~Gyar~sg~-~gv~~~ 138 (643)
=..+.++.+.+.|.+.|...-+. ..+=+++.|.. ..++|. ..+|.--+.+=.||.-..|. .|+ +.
T Consensus 38 evnAaiega~~aGa~eIvV~DsHg~~~Nl~~e~L~~-~a~LI~G~prp~~Mm~Gld~s~D~v~fiGYHa~aG~~~gv-l~ 115 (270)
T cd08769 38 ELNAVLEELFESGFEEIVVADSHGRMDNIDYEELDP-RVSLVSGYPRPLSMMTGLDESFDAVLFIGYHAGAGTPKGI-MD 115 (270)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCcCCCChHHCCc-ceEEEecCCCCchHhhccccCccEEEEEecCCCCCCCCCc-cc
Confidence 45678899999999999887653 22224444432 244442 22333333334566544554 344 34
Q ss_pred ccchhh--HH-----------HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHH
Q 040733 139 SSGPGV--TN-----------IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPR 205 (643)
Q Consensus 139 t~GpG~--~N-----------~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~ 205 (643)
|+--|. .+ .+++.. |-.-++||+++|||......-+..+..+..+.+-+.+.+++..-.+|+++.+
T Consensus 116 HT~s~~~~~~v~iNG~~~gE~~lNa~~-Ag~~gVPV~lVsGDd~~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~ 194 (270)
T cd08769 116 HTYSGSTIYNIWINGKEMNETLINAAY-AGEFGVPVVLVAGDSELEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKE 194 (270)
T ss_pred cccccCceEEEEECCEEcCHHHHHHHH-HhhcCCCEEEEecCHHHHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHH
Confidence 443332 11 233332 3356999999999864321111111112222233344556666677888888
Q ss_pred HHHHHHHHhhc
Q 040733 206 IIKEAFFIATS 216 (643)
Q Consensus 206 ~l~~A~~~A~s 216 (643)
.|++|.+.|..
T Consensus 195 ~I~~aa~~Al~ 205 (270)
T cd08769 195 ELREAVKEALE 205 (270)
T ss_pred HHHHHHHHHHH
Confidence 88888888764
No 402
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=47.79 E-value=64 Score=38.35 Aligned_cols=70 Identities=11% Similarity=0.151 Sum_probs=41.2
Q ss_pred HhhhcCCEEEEecCccCccccC-cccc----ccCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHhh
Q 040733 331 YAVNECDLLLAAGVRFNERMTS-KLED----FATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILES 400 (643)
Q Consensus 331 ~~l~~aDlvL~vG~~~~~~~t~-~~~~----~~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~~ 400 (643)
+-+.++|+||++|+........ .+.. .....|+|.||+........-.-.+.+. .|...++..+...+++
T Consensus 169 ~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlpirPGTD~AL~lam~~~Ii~e 245 (760)
T cd02760 169 ADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVPIRPKTDPAFMFAMIHVMVHE 245 (760)
T ss_pred chHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeCcCCCcHHHHHHHHHHHHHhc
Confidence 3468999999999986321110 1111 1235699999998888766433334443 4665555544444444
No 403
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=47.09 E-value=47 Score=32.38 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=22.0
Q ss_pred CeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCC
Q 040733 503 AIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539 (643)
Q Consensus 503 ~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~ 539 (643)
|-+|++.|+|+.+-.+-+.....+....+++||-|+.
T Consensus 3 ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~ 39 (200)
T PRK05647 3 RIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRP 39 (200)
T ss_pred eEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCc
Confidence 4678899999988765554433322334555555654
No 404
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.92 E-value=33 Score=33.32 Aligned_cols=138 Identities=16% Similarity=0.243 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceeecC-----------------CC-CCCCCCCCCC
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTT-----------------MG-LGLFPCTDEL 316 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~-----------------~g-kg~~~~~hpl 316 (643)
+..+++..++..|.-||+|+|=+-+... -..+++.+||+.+|+.+-..+ .| +.++-.+ |.
T Consensus 54 ~A~eA~raAaA~LlLAk~PVISVNGN~AAL~p~e~v~La~~~~aklEVNLF~RteeRv~~I~e~L~~~Ga~~vLg~~-~~ 132 (256)
T COG1701 54 PALEAIRAAAAALLLAKHPVISVNGNVAALVPEEVVELAEATGAKLEVNLFYRTEERVRKIAEVLKEHGAKEVLGTD-PD 132 (256)
T ss_pred hHHHHHHHHHHHHHhccCCeEEEcCceeeeCcHHHHHHHHHhCCceEEEeeccCHHHHHHHHHHHHhcCcceeecCC-cc
Confidence 4667788888888889999998866543 567889999999998874321 11 2121111 10
Q ss_pred cccccCCCCcHH--HHHhhhcCCEEEEecCccCccccCcccccc-CCceEEEEcCCcccccCCCCCCeeEecCHHHHHHH
Q 040733 317 CLRMVGMFGTVY--ANYAVNECDLLLAAGVRFNERMTSKLEDFA-TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNR 393 (643)
Q Consensus 317 ~lG~~g~~~~~~--~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~-~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~ 393 (643)
..-.-|..+... ..+-+-.||+||+==.. +++. +.+. -.+++|.||.+|-.- ....+++.|+..+-.++..
T Consensus 133 ~~~ip~l~s~R~~v~~~GIy~ADVVLvpLED-GDRt----eaLv~mGK~ViaIDLNPLSR-Tar~AsItIVDnivRA~p~ 206 (256)
T COG1701 133 AARIPGLESERGKVSEEGIYSADVVLVPLED-GDRT----EALVRMGKTVIAIDLNPLSR-TARKASITIVDNIVRAVPN 206 (256)
T ss_pred cccCCCccccccccCcccceeccEEEEecCC-CcHH----HHHHHhCCeEEEEeCCcccc-ccccCceeeeHHHHHHHHH
Confidence 011112221110 11335689998874211 1111 1121 246799999988542 2346789999888888888
Q ss_pred HHHHHhh
Q 040733 394 MNMILES 400 (643)
Q Consensus 394 L~~~l~~ 400 (643)
|.+....
T Consensus 207 li~~~~e 213 (256)
T COG1701 207 LIEFVKE 213 (256)
T ss_pred HHHHHHH
Confidence 8776554
No 405
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=46.89 E-value=1.5e+02 Score=28.00 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=27.5
Q ss_pred EEEEEccchhh-HHHHHHHHHhhhCCCCEEEEeCCCcc
Q 040733 134 GVCLVSSGPGV-TNIMTGLMDAYSDSIPILAITGQVSQ 170 (643)
Q Consensus 134 gv~~~t~GpG~-~N~~~gl~~A~~~~vPvlvItg~~~~ 170 (643)
-++++-|-.|. .+.+..+..|...++|+|.||+....
T Consensus 103 Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 103 DVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 34444444444 58889999999999999999986443
No 406
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=46.43 E-value=49 Score=34.40 Aligned_cols=54 Identities=22% Similarity=0.257 Sum_probs=34.6
Q ss_pred cEEEEcCCchhhHHH--HHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhh-hcCCEEEEecCcc
Q 040733 274 PVLCVGGGCLNSSEE--LRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAV-NECDLLLAAGVRF 346 (643)
Q Consensus 274 PvIl~G~g~~~~~~~--l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l-~~aDlvL~vG~~~ 346 (643)
-+|+++. +..|. ...+||.+++||++|+.|. +.+ .-..+.+ .+.|+||.+|...
T Consensus 30 ~VIlvsD---n~aD~~lA~~iaellNA~Vlttpwg~--yne--------------s~~~eI~~lnpd~VLIIGGp~ 86 (337)
T COG2247 30 VVILVSD---NEADLLLALPIAELLNAPVLTTPWGI--YNE--------------SVLDEIIELNPDLVLIIGGPI 86 (337)
T ss_pred EEEEecc---hHHHHHHhhHHHHHhCCeeEecCccc--ccH--------------HHHHHHHhhCCceEEEECCCC
Confidence 5566555 33343 4568999999999876332 211 1122333 5899999999875
No 407
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=46.07 E-value=1.3e+02 Score=34.50 Aligned_cols=114 Identities=16% Similarity=0.041 Sum_probs=80.2
Q ss_pred EEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCC--CCCccCHHHHh
Q 040733 110 SILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVVEVT 187 (643)
Q Consensus 110 ~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~~~~ 187 (643)
+...--|.+.+.++-|.+.-.| .-..-.|...=.--+-+++--|...++|++.+--.... ..|.+ .+|-++|...+
T Consensus 405 i~~GVREf~M~AimNGialhGg-~~pyggTFlvFsdY~r~AiRlaALm~l~~~~V~THDSI-gvGEDGPTHqPiEqLa~L 482 (663)
T COG0021 405 IHFGVREFAMAAIMNGIALHGG-FIPYGGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSI-GVGEDGPTHQPVEQLASL 482 (663)
T ss_pred eEEeeHHHHHHHHHHhHHHhcC-ceeecceehhhHhhhhHHHHHHHhcCCCeEEEEecCce-ecCCCCCCCCcHHHHHHh
Confidence 3456679999999999997776 22222333333344668999999999999988754433 23443 47889999999
Q ss_pred hccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 188 ~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
|.+- +..|-+|.|..+ ...||+.|.....||..|-+-+
T Consensus 483 RaiP--N~~V~RPaD~~E-t~~aw~~Al~~~~gPt~LiltR 520 (663)
T COG0021 483 RAIP--NLSVIRPADANE-TAAAWKYALERKDGPTALILTR 520 (663)
T ss_pred hccC--CceeEecCChHH-HHHHHHHHHhcCCCCeEEEEec
Confidence 9886 555556666443 4578888887778999998754
No 408
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=45.95 E-value=20 Score=32.92 Aligned_cols=71 Identities=20% Similarity=0.121 Sum_probs=45.7
Q ss_pred CCeEEEEecCccccCCH-HHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhH
Q 040733 502 GAIVVDIDGDGSFIMNL-QELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEA 580 (643)
Q Consensus 502 ~~~Vv~i~GDGsf~m~~-~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a 580 (643)
.++.|.++.||.-.-.. +.+..+.+.++++.+|-+....-. ...+..+|+.
T Consensus 99 ~~~~iv~iTDG~~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~----------------------------~~~l~~la~~ 150 (172)
T PF13519_consen 99 RRRAIVLITDGEDNSSDIEAAKALKQQGITIYTVGIGSDSDA----------------------------NEFLQRLAEA 150 (172)
T ss_dssp EEEEEEEEES-TTHCHHHHHHHHHHCTTEEEEEEEES-TT-E----------------------------HHHHHHHHHH
T ss_pred CceEEEEecCCCCCcchhHHHHHHHHcCCeEEEEEECCCccH----------------------------HHHHHHHHHh
Confidence 56788999999655432 334444545555555444332210 1247889999
Q ss_pred CCCCEEEe-CChhHHHHHHHH
Q 040733 581 CGIPAARV-TKKKDVRAAIQL 600 (643)
Q Consensus 581 ~G~~~~~V-~~~~eL~~al~~ 600 (643)
-|..++.+ .+.++|.+++++
T Consensus 151 tgG~~~~~~~~~~~l~~~~~~ 171 (172)
T PF13519_consen 151 TGGRYFHVDNDPEDLDDAFQQ 171 (172)
T ss_dssp TEEEEEEE-SSSHHHHHHHHH
T ss_pred cCCEEEEecCCHHHHHHHHhc
Confidence 99999999 688999999875
No 409
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=45.08 E-value=64 Score=38.20 Aligned_cols=70 Identities=14% Similarity=0.038 Sum_probs=40.8
Q ss_pred HhhhcCCEEEEecCccCccccCc---ccc----cc-CCceEEEEcCCcccccC-CCCCCee--Ee--cCHHHHHHHHHHH
Q 040733 331 YAVNECDLLLAAGVRFNERMTSK---LED----FA-TRAKIVHIDIDSNEIGK-VKLPDVS--IC--ADAKLVFNRMNMI 397 (643)
Q Consensus 331 ~~l~~aDlvL~vG~~~~~~~t~~---~~~----~~-~~~~iI~Id~d~~~i~~-~~~~~~~--i~--~D~~~~L~~L~~~ 397 (643)
.-+.+||+||.+|+...+..... +.. .. ...|+|.||+....... ...++.. |. .|...++..+...
T Consensus 207 ~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~~a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlpIrPGTD~AL~lam~~~I 286 (735)
T cd02758 207 PDFDNAEFALFIGTSPAQAGNPFKRQARRLAEARTEGNFKYVVVDPVLPNTTSAAGENIRWVPIKPGGDGALAMAMIRWI 286 (735)
T ss_pred cCHhhCcEEEEeCCCHHHhCCCcchHHHHHHHHHHhCCCEEEEECCCCCccccccccCCEEECCCCCcHHHHHHHHHHHH
Confidence 34689999999999864332211 111 11 35799999988766441 0223333 33 5777666655555
Q ss_pred Hhh
Q 040733 398 LES 400 (643)
Q Consensus 398 l~~ 400 (643)
++.
T Consensus 287 ie~ 289 (735)
T cd02758 287 IEN 289 (735)
T ss_pred HHC
Confidence 554
No 410
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=44.89 E-value=95 Score=29.37 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceee
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~t 302 (643)
.+.+.+++++++|.+++| |++.|.|.. .....+.....++|.++..
T Consensus 18 l~~~~l~~~~~~i~~a~~-I~i~G~G~S~~~A~~~~~~l~~~g~~~~~ 64 (179)
T cd05005 18 IDEEELDKLISAILNAKR-IFVYGAGRSGLVAKAFAMRLMHLGLNVYV 64 (179)
T ss_pred cCHHHHHHHHHHHHhCCe-EEEEecChhHHHHHHHHHHHHhCCCeEEE
Confidence 377889999999999966 777888765 2333333333456887764
No 411
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=44.80 E-value=51 Score=36.27 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=59.2
Q ss_pred EEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCC
Q 040733 505 VVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP 584 (643)
Q Consensus 505 Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~ 584 (643)
|.++++--|..+++..+.++.-..-|+++|= |.-.+.+.. +. .....|=..+.+.|=-.
T Consensus 79 V~lVvsGPGl~hal~gv~NA~~n~wPll~Ig------Gsa~~~~~~-----rG----------afQe~dQvel~rp~~K~ 137 (571)
T KOG1185|consen 79 VLLVVSGPGLTHALAGVANAQMNCWPLLLIG------GSASTLLEN-----RG----------AFQELDQVELFRPLCKF 137 (571)
T ss_pred EEEEecCChHHHHHHHhhhhhhccCcEEEEe------cccchhhhc-----cc----------ccccccHHhhhhhhhhh
Confidence 5567777799999999999988888866652 222222211 10 02344545555555445
Q ss_pred EEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeC
Q 040733 585 AARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVS 615 (643)
Q Consensus 585 ~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~ 615 (643)
..|+++.+++...+++|++ ++|++.||+++|
T Consensus 138 ~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 138 VARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred ccCCCChhhccHHHHHHHHHHhcCCCCceEEecccc
Confidence 5688888887766666654 689999999987
No 412
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=44.68 E-value=58 Score=33.27 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhc
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNE 335 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~ 335 (643)
+.+.+++++++|.+|+| |.+.|.|.. .....+....-++|.++.. ..+.|... .....+.+
T Consensus 114 ~~~~l~~~~~~i~~a~~-I~i~G~G~s~~~A~~~~~~l~~~g~~~~~-------~~d~~~~~----------~~~~~~~~ 175 (278)
T PRK11557 114 SEEKLHECVTMLRSARR-IILTGIGASGLVAQNFAWKLMKIGINAVA-------ERDMHALL----------ATVQALSP 175 (278)
T ss_pred CHHHHHHHHHHHhcCCe-EEEEecChhHHHHHHHHHHHhhCCCeEEE-------cCChHHHH----------HHHHhCCC
Q ss_pred CCEEEEecCc
Q 040733 336 CDLLLAAGVR 345 (643)
Q Consensus 336 aDlvL~vG~~ 345 (643)
-|++|++..+
T Consensus 176 ~Dv~I~iS~s 185 (278)
T PRK11557 176 DDLLLAISYS 185 (278)
T ss_pred CCEEEEEcCC
No 413
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=44.45 E-value=1.5e+02 Score=30.20 Aligned_cols=148 Identities=18% Similarity=0.234 Sum_probs=77.5
Q ss_pred HHHHHHhcCCCCCeEEE--eCCChhHHH---HHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc
Q 040733 439 AIQILNELTDDEETIIS--TGVGQHQMW---AIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS 513 (643)
Q Consensus 439 ~~~~L~~~l~~~d~iv~--~d~G~~~~~---~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs 513 (643)
+-+.+++-+.+++-+++ .++|+.... .--+++-..+.+.+.... .-||| -+.|+||+++. =||++-+. .
T Consensus 41 Ln~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPI-tE~gF-tG~avGAA~~G-LrPi~efM---t 114 (359)
T KOG0524|consen 41 LNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPI-TEMGF-TGIAVGAAMAG-LRPICEFM---T 114 (359)
T ss_pred HHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcc-hhccc-chhhHhHHHhC-cchhhhhh---c
Confidence 33455665655344444 355532110 111223334556665433 55776 46778888875 36665443 6
Q ss_pred ccCCHHHHHHHHHh----------CCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHC-C
Q 040733 514 FIMNLQELAAIKAE----------NIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC-G 582 (643)
Q Consensus 514 f~m~~~eL~Ta~~~----------~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~-G 582 (643)
|.|++|.+..+... ..|+-||.=--+|.+.-. .-.+.-||+..-.++ |
T Consensus 115 fnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv---------------------~AqHSQ~f~~wy~siPG 173 (359)
T KOG0524|consen 115 FNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGV---------------------AAQHSQDFASWYGSIPG 173 (359)
T ss_pred chhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCcccch---------------------hhhhhhhhHHHhccCCC
Confidence 77888887654422 123222222111111000 012334565554444 6
Q ss_pred CCEEEeCChhHHHHHHHHHHhCCCcEE-EEEE
Q 040733 583 IPAARVTKKKDVRAAIQLMLETPGPYL-LDVM 613 (643)
Q Consensus 583 ~~~~~V~~~~eL~~al~~al~~~gp~l-IeV~ 613 (643)
++.+...+.++-+..|+.|+..+-|++ +|=.
T Consensus 174 lkvvapysaedakGLlKaAIRd~NPVV~lEne 205 (359)
T KOG0524|consen 174 LKVVAPYSAEDAKGLLKAAIRDENPVVFLENE 205 (359)
T ss_pred ceEeccCChhhhhhHHHHhccCCCCeEEEech
Confidence 677777888999999999998777764 4433
No 414
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=44.45 E-value=71 Score=32.91 Aligned_cols=96 Identities=18% Similarity=0.141 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhh
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVN 334 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~ 334 (643)
.+++.+++++++|.+|+|..++- .|.. -....+..-..++|.++.. +++.|-. ......+.
T Consensus 115 l~~~~l~~av~~L~~A~rI~~~G-~g~S~~vA~~~~~~l~~ig~~~~~-------~~d~~~~----------~~~~~~~~ 176 (281)
T COG1737 115 LDEEALERAVELLAKARRIYFFG-LGSSGLVASDLAYKLMRIGLNVVA-------LSDTHGQ----------LMQLALLT 176 (281)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEE-echhHHHHHHHHHHHHHcCCceeE-------ecchHHH----------HHHHHhCC
Confidence 47889999999999998876665 4444 4455666666678888864 1221111 11123467
Q ss_pred cCCEEEEecCccCccccCc-cc-cccCCceEEEEcCC
Q 040733 335 ECDLLLAAGVRFNERMTSK-LE-DFATRAKIVHIDID 369 (643)
Q Consensus 335 ~aDlvL~vG~~~~~~~t~~-~~-~~~~~~~iI~Id~d 369 (643)
.-|++|++..+-....+-. .. .-..++++|.|...
T Consensus 177 ~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 177 PGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCC
Confidence 8899999975521111100 01 11235688888655
No 415
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=44.07 E-value=12 Score=38.22 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHCCCCEEEEccCC--CcHHHHHHHhhCCCeEEecC----------ChhHHHHHHHHHH-HHhCCcEEEEE
Q 040733 72 GADIIVEALERQGVTTVFAYPGG--ASIEIHQSLTRSNIRSILPR----------HEQGGIFAAEGYA-RSSGTPGVCLV 138 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~--~~~~l~~al~~~~i~~i~~~----------hE~~A~~~A~Gya-r~sg~~gv~~~ 138 (643)
=..+.++.+.+.|.+.|...-+. ..+=+.+.|.. ..++|... +|.--+.+=.||. |+..++||+ .
T Consensus 38 evnAaiega~~aGa~eVvVnDsHg~~~Nll~e~L~~-~a~LI~G~prp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gvL-~ 115 (265)
T cd00281 38 AVIAACEGSLAAGATQVLVKDSHDSGRNLIPERLPE-PVQLISGSGHPYCMVQGLDRSFDALLFIGYHARAGTAANVM-A 115 (265)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCccccChhHCCc-CEEEEecCCCcchhhhccccCccEEEEEecCCcccCCCCcc-c
Confidence 45678899999999999988743 22234444432 25555332 2222233334533 333224553 2
Q ss_pred ccch-hhHH-----------HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHH
Q 040733 139 SSGP-GVTN-----------IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRI 206 (643)
Q Consensus 139 t~Gp-G~~N-----------~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~ 206 (643)
|+-- ...+ .+++.. |-.-++||+++|||......-+..+..+..+.+-+.+.+++....+|++..+.
T Consensus 116 HT~~~~~~~v~iNG~~~gE~~lna~~-Ag~~gVPV~lvsGDd~~~~ea~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~ 194 (265)
T cd00281 116 HSYTTEVSQIRINGQAIAEFHLNALT-AGYYGVPVVMVAGDAEVCKEAKAYDAQVETVVTKKGMGRFSVKAPSPQKVLRA 194 (265)
T ss_pred cccccceEEEEECCEEcCHHHHHHHH-HhhcCCCEEEEecCHHHHHHHHHhCCCceEEEEeeeeCCCccccCCHHHHHHH
Confidence 3211 1211 222222 33458999999998653221111111122223334445566677788888888
Q ss_pred HHHHHHHhh
Q 040733 207 IKEAFFIAT 215 (643)
Q Consensus 207 l~~A~~~A~ 215 (643)
|+++.+.|+
T Consensus 195 I~~~a~~Al 203 (265)
T cd00281 195 IREGTEGSL 203 (265)
T ss_pred HHHHHHHHH
Confidence 888887775
No 416
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=43.88 E-value=1.4e+02 Score=31.58 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCch---h---hHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHH
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCL---N---SSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYAN 330 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~---~---~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~ 330 (643)
..+.++++++++.++++++|+.|.|.. + ....+..|+..+|-- ...|.+.+...+|++.- .......
T Consensus 229 ~~~~i~~la~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~l~~l~G~~---~~~g~~~~~~~np~~~~----~~~~~~~ 301 (374)
T cd00368 229 PAETIRALAREFAAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTGNI---GRPGGGLGPGGNPLVSA----PDANRVR 301 (374)
T ss_pred CHHHHHHHHHHHHhCCCeEEEeccccceecccHHHHHHHHHHHHHhCCC---CCCCCcCCCCCChhhcC----CCHHHHH
Confidence 456789999999999999999998874 1 223344455554431 11233333344454321 1122344
Q ss_pred HhhhcCCEEEEecCccCc
Q 040733 331 YAVNECDLLLAAGVRFNE 348 (643)
Q Consensus 331 ~~l~~aDlvL~vG~~~~~ 348 (643)
+++++.|++++++..+++
T Consensus 302 ~al~~~~~~V~~d~~~~e 319 (374)
T cd00368 302 AALKKLDFVVVIDIFMTE 319 (374)
T ss_pred HHHhCCCeEEEEecCCCc
Confidence 678899999999887754
No 417
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=43.41 E-value=86 Score=38.89 Aligned_cols=141 Identities=16% Similarity=-0.018 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHh------CCCcEEEEcCCchh--hHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHH
Q 040733 257 DELALRQTLKLIVE------SKNPVLCVGGGCLN--SSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~------AkrPvIl~G~g~~~--~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~ 328 (643)
-+++++.+++.|.. ..+...+.|.++.. ......+|...+|.+.+....--.-.|...|...|. .....
T Consensus 162 WDEAldlIAakl~~i~~kYGPdsI~~fs~~~a~s~~s~aa~~Rfl~llGg~~~~~~d~~Cd~p~a~p~v~G~---~t~~~ 238 (1235)
T TIGR01580 162 WQEVNELIAASNVYTVKNYGPDRVVGFSPIPAMSMVSYASGSRYLSLIGGTCLSFYDWYCDLPPASPQTWGE---QTDVP 238 (1235)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceEEEecCCCcccchhhHHHHHHHHhcCCccccCCCCcchhhHHhHhheec---CCCCC
Confidence 35666666655532 33433344433331 122345788888987654321111112223333332 11110
Q ss_pred HHHhhhcCCEEEEecCccCccccCccc----cccCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHhh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLE----DFATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILES 400 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~----~~~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~~ 400 (643)
-..-+.++|+||+.|+......+.... .....+|+|.||++.....+.-...+.|. .|...+|..+...+++
T Consensus 239 e~~D~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~tA~~AD~WLpIrPGTD~ALaLAm~hvII~E 316 (1235)
T TIGR01580 239 ESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAALALAMGHVILRE 316 (1235)
T ss_pred CchhhhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChhhHhhCEEeCCCCChHHHHHHHHHHHHHHC
Confidence 012356999999999986433221111 11245799999999987765332334444 5777776665555554
No 418
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=43.37 E-value=1.1e+02 Score=32.16 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHh-CCCcEEEEcCCch-hhHHHHHHHHHHhCCceeec
Q 040733 257 DELALRQTLKLIVE-SKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 257 ~~~~i~~~~~~L~~-AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt 303 (643)
....+.+++.++.+ .++.+|.+|.--+ ++.++|..++|++|++|+..
T Consensus 152 KTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~ 200 (340)
T COG0552 152 KTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG 200 (340)
T ss_pred hHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc
Confidence 45678888877765 4556666666444 67899999999999999963
No 419
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=42.99 E-value=50 Score=34.09 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=22.2
Q ss_pred CCCeEEEEecCccccCCHHHHHHHHHh---CCCeEEEEEeCC
Q 040733 501 PGAIVVDIDGDGSFIMNLQELAAIKAE---NIPVKILLINNQ 539 (643)
Q Consensus 501 p~~~Vv~i~GDGsf~m~~~eL~Ta~~~---~lpv~ivV~NN~ 539 (643)
+-|-+|++.|-|+ +++.|..+.+. +..+..||-||.
T Consensus 84 ~~ki~vl~Sg~g~---nl~~l~~~~~~g~l~~~i~~visn~~ 122 (280)
T TIGR00655 84 LKRVAILVSKEDH---CLGDLLWRWYSGELDAEIALVISNHE 122 (280)
T ss_pred CcEEEEEEcCCCh---hHHHHHHHHHcCCCCcEEEEEEEcCh
Confidence 3466777888765 45555555544 345667776764
No 420
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=42.39 E-value=32 Score=29.50 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=22.3
Q ss_pred CCcEEEEcCCchhhHHHHHHHHHHhCCceeecCC
Q 040733 272 KNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 272 krPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~ 305 (643)
=+.+|+.|+ ....+++.++|+..++||+.|..
T Consensus 62 i~~iIltg~--~~~~~~v~~la~~~~i~vi~t~~ 93 (105)
T PF07085_consen 62 IACIILTGG--LEPSEEVLELAKELGIPVISTPY 93 (105)
T ss_dssp ECEEEEETT------HHHHHHHHHHT-EEEE-SS
T ss_pred CCEEEEeCC--CCCCHHHHHHHHHCCCEEEEECC
Confidence 477888886 34578899999999999998764
No 421
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=41.91 E-value=53 Score=34.56 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=38.6
Q ss_pred cccCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEE
Q 040733 62 SRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSI 111 (643)
Q Consensus 62 ~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i 111 (643)
+|+.+......-+.+++.|+++||+.+|.+-|+.++.-...|.+.++.+|
T Consensus 70 sR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vi 119 (317)
T cd00763 70 ARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCV 119 (317)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHcCCCEE
Confidence 34433334457789999999999999999999999988888877544443
No 422
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=41.69 E-value=1.1e+02 Score=28.84 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcHHHHHHH----hhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH-H
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSL----TRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT-N 146 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al----~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~-N 146 (643)
--+.+++.|.+.+-=++||.-++ ..+...+ .+.|+..+... |.. ....+.+ -++++-|..|.+ .
T Consensus 19 ~~~~~~~~l~~a~~I~i~G~G~S--~~~A~~~~~~l~~~g~~~~~~~-~~~-------~~~~~~~-Dv~I~iS~sG~t~~ 87 (179)
T TIGR03127 19 ELDKLADKIIKAKRIFVAGAGRS--GLVGKAFAMRLMHLGFNVYVVG-ETT-------TPSIKKG-DLLIAISGSGETES 87 (179)
T ss_pred HHHHHHHHHHhCCEEEEEecCHH--HHHHHHHHHHHHhCCCeEEEeC-Ccc-------cCCCCCC-CEEEEEeCCCCcHH
Confidence 35567888888765556665443 3444333 33454444332 211 1223333 344444555554 4
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCccc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQK 171 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~ 171 (643)
.+..+..|...++|+|.||+.....
T Consensus 88 ~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 88 LVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCc
Confidence 6788888999999999999865543
No 423
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=41.67 E-value=51 Score=38.66 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCcEEEEcCCchh------hHHHHHHHHHHhC
Q 040733 262 RQTLKLIVESKNPVLCVGGGCLN------SSEELRKFVGLTG 297 (643)
Q Consensus 262 ~~~~~~L~~AkrPvIl~G~g~~~------~~~~l~~lae~lg 297 (643)
.+++++|.+||+|+|++|.|+.. ....+..|+..+|
T Consensus 428 ~~~a~~l~~Ak~~~Ii~G~g~~~~~~g~~~~~ai~~La~~~G 469 (687)
T PRK09130 428 HEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVG 469 (687)
T ss_pred HHHHHHHhcCCCcEEEECCcccccccHHHHHHHHHHHHHHhC
Confidence 46789999999999999998851 2345667777776
No 424
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=41.58 E-value=33 Score=36.65 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=42.0
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~ 539 (643)
++.+|+||+++ +.+++..+-|.+|.+....|..+.-..+|+++++.+=.
T Consensus 60 A~~~a~GAs~a--G~Ra~taTSg~Gl~lm~E~l~~a~~~e~P~v~v~v~R~ 108 (352)
T PRK07119 60 AINMVYGAAAT--GKRVMTSSSSPGISLKQEGISYLAGAELPCVIVNIMRG 108 (352)
T ss_pred HHHHHHHHHhh--CCCEEeecCcchHHHHHHHHHHHHHccCCEEEEEeccC
Confidence 68899999988 46789999999998887778889999999999888754
No 425
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=41.37 E-value=52 Score=28.99 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceee
Q 040733 260 ALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 260 ~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~t 302 (643)
.+++++++|.++++ +++.|.|.. ....++....+.+|.++..
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~~~a~~~~~~l~~~~~~~~~ 44 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSGLVAEYLAYKLLRLGKPVVL 44 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchHHHHHHHHHHHHHcCCceEE
Confidence 47889999999865 788888765 5566677777777776653
No 426
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=40.08 E-value=2.2e+02 Score=26.88 Aligned_cols=102 Identities=20% Similarity=0.327 Sum_probs=68.6
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCc--HHHHHHHh----h-CC-CeEEecC-ChhHHHHHHHH------HH---HHh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGAS--IEIHQSLT----R-SN-IRSILPR-HEQGGIFAAEG------YA---RSS 130 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~--~~l~~al~----~-~~-i~~i~~~-hE~~A~~~A~G------ya---r~s 130 (643)
-...++.|++.|+.-|=--+||+-|+.. .+|...|. + ++ +-.|.-. +-..-...+-= |+ ++.
T Consensus 27 I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~ 106 (176)
T COG0279 27 IERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEAL 106 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhc
Confidence 3468899999999888777999999864 34444442 2 23 4444333 33322222221 23 335
Q ss_pred CCcE---EEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCccc
Q 040733 131 GTPG---VCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQK 171 (643)
Q Consensus 131 g~~g---v~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~ 171 (643)
|++| +.+.|+| -..|.+.++..|..-++-+|++||.....
T Consensus 107 g~~GDvLigISTSG-NS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~ 149 (176)
T COG0279 107 GQPGDVLIGISTSG-NSKNVLKAIEAAKEKGMTVIALTGKDGGK 149 (176)
T ss_pred CCCCCEEEEEeCCC-CCHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 6665 5677888 88999999999999999999999965543
No 427
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=40.00 E-value=63 Score=33.52 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=22.4
Q ss_pred CCeEEEEecCccccCCHHHHHHHHHhC---CCeEEEEEeCC
Q 040733 502 GAIVVDIDGDGSFIMNLQELAAIKAEN---IPVKILLINNQ 539 (643)
Q Consensus 502 ~~~Vv~i~GDGsf~m~~~eL~Ta~~~~---lpv~ivV~NN~ 539 (643)
-|-+|++.|-|+ +++.|..+.+.+ ..+..||-||.
T Consensus 94 ~kiavl~Sg~g~---nl~al~~~~~~~~l~~~i~~visn~~ 131 (289)
T PRK13010 94 PKVVIMVSKFDH---CLNDLLYRWRMGELDMDIVGIISNHP 131 (289)
T ss_pred eEEEEEEeCCCc---cHHHHHHHHHCCCCCcEEEEEEECCh
Confidence 366778888765 566776666543 45666666664
No 428
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=39.23 E-value=4.7e+02 Score=27.29 Aligned_cols=141 Identities=12% Similarity=0.065 Sum_probs=81.6
Q ss_pred CeEEEeCCChhHHHHHHhc-cccCCCe-EEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc-cc-CCHHHHHHHHH
Q 040733 451 ETIISTGVGQHQMWAIQFY-MYKRARQ-LLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS-FI-MNLQELAAIKA 526 (643)
Q Consensus 451 d~iv~~d~G~~~~~~~~~~-~~~~p~~-~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs-f~-m~~~eL~Ta~~ 526 (643)
..-+++-+|........+. ...-+.+ +++.++-.-.+..+.-.+=.-...|+.++|++.+.++ .- -+..++..+.+
T Consensus 152 ~ValiSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~ 231 (300)
T PLN00125 152 RIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESG 231 (300)
T ss_pred cEEEEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhc
Confidence 5556666664332222221 1122333 3344443226777888888777778999999999863 32 35667666666
Q ss_pred hCCCeEEEEEeCCC-chhhHHHHHHhhcccccccccCCCCC-CCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC
Q 040733 527 ENIPVKILLINNQY-LGMNVEYEDRYFEANRANSFLGDPLR-KSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET 604 (643)
Q Consensus 527 ~~lpv~ivV~NN~~-~g~~~~~q~~~~~~~~~~~~~g~p~~-~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~ 604 (643)
.+.||+++..--.. -| .+..|+- .-.. .....-.|..+.+-+|+. ++++.+||.+.|++.++.
T Consensus 232 ~~KPVV~lk~Grs~~~g-----------~~~sHTG--ala~~~~G~~~~~~a~~rq~Gvi--~v~~~~el~~~~~~~~~~ 296 (300)
T PLN00125 232 TEKPVVAFIAGLTAPPG-----------RRMGHAG--AIVSGGKGTAQDKIKALREAGVT--VVESPAKIGVAMLEVFKE 296 (300)
T ss_pred CCCCEEEEEecCCCCCC-----------CCccchh--hhhcCCCCCHHHHHHHHHHCCCe--EeCCHHHHHHHHHHHHHh
Confidence 68898887764332 11 1112221 0000 000112367888888874 789999999999999875
Q ss_pred CC
Q 040733 605 PG 606 (643)
Q Consensus 605 ~g 606 (643)
+|
T Consensus 297 ~~ 298 (300)
T PLN00125 297 RG 298 (300)
T ss_pred cc
Confidence 44
No 429
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=39.13 E-value=1.3e+02 Score=30.68 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC--------CeEEecCChhHHHH---HHHH-----H----HHHh
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN--------IRSILPRHEQGGIF---AAEG-----Y----ARSS 130 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~--------i~~i~~~hE~~A~~---~A~G-----y----ar~s 130 (643)
...+.+++.|++.|-=++||.-++..+.++|+.+..+ +..+..-.+.+-.. .+++ . +..-
T Consensus 37 ~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l 116 (257)
T cd05007 37 RAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINL 116 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCC
Confidence 5678899999988877788877777777777764321 33333322221110 1111 1 1111
Q ss_pred CCcEEEEEccchh-hHHHHHHHHHhhhCCCCEEEEeCCCccc
Q 040733 131 GTPGVCLVSSGPG-VTNIMTGLMDAYSDSIPILAITGQVSQK 171 (643)
Q Consensus 131 g~~gv~~~t~GpG-~~N~~~gl~~A~~~~vPvlvItg~~~~~ 171 (643)
++--+++.-|..| .-..+.++..|...+.|+|.||+.....
T Consensus 117 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~ 158 (257)
T cd05007 117 TERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSP 158 (257)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 2223444445555 4456688899999999999999865543
No 430
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=39.08 E-value=1.1e+02 Score=24.50 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCc-hhhHHHHHHHHHHhCCceee
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGC-LNSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~-~~~~~~l~~lae~lg~PV~t 302 (643)
+.+.+.++++.+....-.++|+=+|+ .++.....++|+..|+++..
T Consensus 16 D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 16 DHELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIR 62 (71)
T ss_pred cHHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEE
Confidence 55667777776665444555665566 67888889999999999975
No 431
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=39.07 E-value=1e+02 Score=32.07 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=55.8
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC---CCe-----EEec------------CChhHHHH-HHHHHHHH
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS---NIR-----SILP------------RHEQGGIF-AAEGYARS 129 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~---~i~-----~i~~------------~hE~~A~~-~A~Gyar~ 129 (643)
...+.+++.|++.|-=++||.-++......|+.+.. +.. .+.. .++..... ........
T Consensus 45 ~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~~~dl~~~~l 124 (291)
T TIGR00274 45 AAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAGANDLQNIHL 124 (291)
T ss_pred HHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCChHHHhccchhhhcchHHHHHHHHhcCC
Confidence 467778889988887778888777666666754321 111 1111 11111111 11111112
Q ss_pred h-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCc
Q 040733 130 S-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVS 169 (643)
Q Consensus 130 s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~ 169 (643)
+ +-..+++.+|| -.-+.+.++..|...+.|+|.||+...
T Consensus 125 ~~~DvvI~IS~SG-~T~~vi~al~~Ak~~Ga~tIaIT~~~~ 164 (291)
T TIGR00274 125 TKNDVVVGIAASG-RTPYVIAGLQYARSLGALTISIACNPK 164 (291)
T ss_pred CCCCEEEEEeCCC-CcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 2 23344444544 355577889999999999999998544
No 432
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=38.98 E-value=1.3e+02 Score=36.01 Aligned_cols=93 Identities=22% Similarity=0.234 Sum_probs=55.3
Q ss_pred EEEecCccccCC--HHHHHHHHHhC---C-CeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHh
Q 040733 506 VDIDGDGSFIMN--LQELAAIKAEN---I-PVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAE 579 (643)
Q Consensus 506 v~i~GDGsf~m~--~~eL~Ta~~~~---l-pv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~ 579 (643)
|++-||-+|.=- ++|.-...+.. . +.+-||+||+.. .. . .|... -..+--..+|+
T Consensus 329 iliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiG-FT-----------T------sp~~s-RSt~Y~TDvAK 389 (906)
T COG0567 329 ILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIG-FT-----------T------SPADA-RSTPYCTDVAK 389 (906)
T ss_pred EEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCC-CC-----------C------Ccccc-cCCCCCCChhh
Confidence 488999998753 55544444332 2 578899999852 11 0 00000 01122235677
Q ss_pred HCCCCEEEe--CChhHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 040733 580 ACGIPAARV--TKKKDVRAAIQLMLE----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 580 a~G~~~~~V--~~~~eL~~al~~al~----~~gp~lIeV~v~~~ 617 (643)
+++++.+.| ++++....+.+-|++ ..+.++||+.+.+.
T Consensus 390 m~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr 433 (906)
T COG0567 390 MIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRR 433 (906)
T ss_pred ccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCC
Confidence 778888777 566665555554443 67899999998764
No 433
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=38.74 E-value=1.2e+02 Score=33.72 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHhc--------CCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeE
Q 040733 434 IPPQYAIQILNEL--------TDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIV 505 (643)
Q Consensus 434 i~~~~~~~~L~~~--------l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~V 505 (643)
..|..++..+..+ |.+ .-++++..++. ..=.|.+|+++...|-||++|.-+.-. .+..|
T Consensus 233 ~e~~~I~~~v~~~~~~~~~~~l~g-kkvLITaGpT~--------E~IDpVR~ItN~SSGkmG~alA~aa~~----~GA~V 299 (475)
T PRK13982 233 AEPLEIAAAAEALLRPPQPKPLAG-RRVLITAGPTH--------EPIDPVRYIANRSSGKQGFAIAAAAAA----AGAEV 299 (475)
T ss_pred CCHHHHHHHHHHHHhhccccccCC-CEEEEecCCcc--------ccCCcceeeCCCCchHHHHHHHHHHHH----CCCcE
Confidence 3555665555433 333 45666665543 112489999999889998766655443 46789
Q ss_pred EEEecCcccc----------CCHHHHHHHHHhCCCeEEEEE
Q 040733 506 VDIDGDGSFI----------MNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 506 v~i~GDGsf~----------m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
.+|.|-.++- -+..|+..+++..++.-++|+
T Consensus 300 tlI~Gp~~~~~p~~v~~i~V~ta~eM~~av~~~~~~Di~I~ 340 (475)
T PRK13982 300 TLISGPVDLADPQGVKVIHVESARQMLAAVEAALPADIAIF 340 (475)
T ss_pred EEEeCCcCCCCCCCceEEEecCHHHHHHHHHhhCCCCEEEE
Confidence 9999977641 246888888877666555554
No 434
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=38.70 E-value=1.9e+02 Score=28.14 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHh-CCCcEEEEcCCchhhHHHHHHHHHHhCCceeec-CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcC
Q 040733 259 LALRQTLKLIVE-SKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCT-TMGLGLFPCTDELCLRMVGMFGTVYANYAVNEC 336 (643)
Q Consensus 259 ~~i~~~~~~L~~-AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt-~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~a 336 (643)
+.+.+|+++|.. +++-++++|... .+...+.++|+++|.+.+.. |.| |.+ .+.. .......
T Consensus 47 ~~L~~A~~~i~~i~~~~ILfVgtk~-~~~~~V~~~A~~~g~~~v~~RWlg-GtL--------------TN~~-~~~~~~P 109 (196)
T TIGR01012 47 ERLRVAAKFLVRIEPEDILVVSARI-YGQKPVLKFAKVTGARAIAGRFTP-GTF--------------TNPM-QKAFREP 109 (196)
T ss_pred HHHHHHHHHHHHhhCCeEEEEecCH-HHHHHHHHHHHHhCCceECCeeCC-CCC--------------CCcc-ccccCCC
Confidence 456666666654 255577777633 46678999999999988754 222 222 1111 1124689
Q ss_pred CEEEEecCccC
Q 040733 337 DLLLAAGVRFN 347 (643)
Q Consensus 337 DlvL~vG~~~~ 347 (643)
|+|++++..-+
T Consensus 110 dlliv~dp~~~ 120 (196)
T TIGR01012 110 EVVVVTDPRAD 120 (196)
T ss_pred CEEEEECCccc
Confidence 99999986643
No 435
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=38.48 E-value=8.8 Score=39.10 Aligned_cols=141 Identities=20% Similarity=0.193 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCc--HHHHHHHhhCCCeEEecC----------ChhHHHHHHHHHHHHhCC-cEEEEE
Q 040733 72 GADIIVEALERQGVTTVFAYPGGAS--IEIHQSLTRSNIRSILPR----------HEQGGIFAAEGYARSSGT-PGVCLV 138 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~--~~l~~al~~~~i~~i~~~----------hE~~A~~~A~Gyar~sg~-~gv~~~ 138 (643)
=..+.++.+.+.|.+.|...-+... +=+.+.|.. ..++|... +|.--+.+=.||.-..|. .||+ .
T Consensus 38 evnAaiega~~aGa~eVvV~DsHg~~~Nll~e~L~~-~a~LI~G~pkp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gvL-~ 115 (266)
T cd08663 38 EVNAAIEGALEAGATEVLVNDSHGSMRNLLPEDLDP-RARLISGSPKPLGMMEGLDEGFDAALFVGYHARAGTPPGVL-S 115 (266)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCccCcChHHCCc-cEEEEecCCCCchhhhccccCcCEEEEEecCCCcCCCCCcc-c
Confidence 3457889999999999998875332 233444432 24555222 333333444564433334 4443 3
Q ss_pred ccchhh--HH-----------HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHH
Q 040733 139 SSGPGV--TN-----------IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPR 205 (643)
Q Consensus 139 t~GpG~--~N-----------~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~ 205 (643)
|+-.|. .+ .+++.. |-.-++||+++|||......-+.-+..+..+.+-+.+.+++..-.+|++..+
T Consensus 116 HT~s~~~v~~v~iNG~~vgE~glna~~-Ag~~gVPV~lVsGDd~~~~ea~~~~p~i~tv~vK~~~gr~aa~~~~p~~a~~ 194 (266)
T cd08663 116 HTYSGGAVRDVRLNGREVGETGLNAAV-AGEYGVPVVLVTGDDAACAEARELGPGVETVAVKEAIGRFAARCLPPAEARA 194 (266)
T ss_pred ccccccceEEEEECCEEcCHHHHHHHH-HhhcCCCEEEEecCHHHHHHHHhhCCCcEEEEEecccCCCccccCCHHHHHH
Confidence 332222 21 222222 3356999999999875432111111112222333445556667778889999
Q ss_pred HHHHHHHHhh
Q 040733 206 IIKEAFFIAT 215 (643)
Q Consensus 206 ~l~~A~~~A~ 215 (643)
.|+++.+.|+
T Consensus 195 ~I~~~a~~Al 204 (266)
T cd08663 195 LIREAAAEAV 204 (266)
T ss_pred HHHHHHHHHH
Confidence 9999988885
No 436
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=38.07 E-value=7.9 Score=39.47 Aligned_cols=143 Identities=19% Similarity=0.172 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcHH--HHHHHhhCCCeEEecC----------ChhHHHHHHHHHHHHhCCcEEEEEc
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASIE--IHQSLTRSNIRSILPR----------HEQGGIFAAEGYARSSGTPGVCLVS 139 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~~--l~~al~~~~i~~i~~~----------hE~~A~~~A~Gyar~sg~~gv~~~t 139 (643)
-..+.++.+.+.|.+.|...-+...+. +.+.|.. ..++|... +|.--+.+=.||.-..|.+.-++.|
T Consensus 38 evnAaiega~~aGa~eVvV~DsHg~~~Nl~~~~L~~-~~~LI~G~~rp~~Mm~Gld~~~Dav~fiGYHa~aGt~~gvL~H 116 (265)
T PF04951_consen 38 EVNAAIEGAFEAGATEVVVNDSHGSMRNLLPEELPP-RARLIRGSPRPLSMMEGLDESFDAVFFIGYHARAGTPRGVLAH 116 (265)
T ss_dssp HHHHHHHHHHHTT-SEEEEEE-STTS--S-TTTS-T-TSEEEEES--TTGGGTT--TT-SEEEEEEE---TTS-SSTT--
T ss_pred HHHHHHHHHHhcCCeEEEEEecCCCCCCcChHHCCc-CeEEEeCCCCcchhhhccccCcCEEEEEecCcccCCCCccccc
Confidence 456788999999999999876543222 3333321 26666542 1222222223444444443333334
Q ss_pred cchhhH------------H-HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHH
Q 040733 140 SGPGVT------------N-IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRI 206 (643)
Q Consensus 140 ~GpG~~------------N-~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~ 206 (643)
+--|.. - .+++.. |-.-++||+++|||......-+..+-.+-.+.+-+.+..++....+|+++.+.
T Consensus 117 T~~~~~i~~v~iNG~~~gE~~lna~~-Ag~~GVPV~lVsGD~~l~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~ 195 (265)
T PF04951_consen 117 TYSGSVIHEVRINGREVGEFGLNAAL-AGYYGVPVVLVSGDDALCEEAKELLPWIVTVAVKEGIGRYAAISLHPAEACER 195 (265)
T ss_dssp SSSTTE-EEEEETTEEE-HHHHHHHH-HHHTT--EEEEEEEHHHHHHHHTTSTT-EEEEEEEEEETTEEEE--HHHHHHH
T ss_pred eeccccceeEEECCEEcchhHHHHHH-HhhcCCcEEEEeCcHHHHHHHHHhCCCceEEEEecccCCCccccCCHHHHHHH
Confidence 333332 1 334433 44569999999998764322211111111122333444556677788888888
Q ss_pred HHHHHHHhhc
Q 040733 207 IKEAFFIATS 216 (643)
Q Consensus 207 l~~A~~~A~s 216 (643)
|+++.+.|..
T Consensus 196 i~~~a~~Al~ 205 (265)
T PF04951_consen 196 IREAAKEALE 205 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888864
No 437
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=37.98 E-value=54 Score=28.81 Aligned_cols=42 Identities=31% Similarity=0.427 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEec
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILP 113 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~ 113 (643)
-...+++.+.+.|++.+...||.....+.+.+.+.+++++..
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 444577778888999999999999999999999988988743
No 438
>PRK03202 6-phosphofructokinase; Provisional
Probab=37.78 E-value=58 Score=34.29 Aligned_cols=51 Identities=25% Similarity=0.323 Sum_probs=39.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEe
Q 040733 62 SRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSIL 112 (643)
Q Consensus 62 ~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~ 112 (643)
+|+.+......-+.+++.|++++++.++.+-|+.++.-...|.+.++.+|.
T Consensus 71 sR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vig 121 (320)
T PRK03202 71 ARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIG 121 (320)
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEE
Confidence 455444344578899999999999999999999999888888875554443
No 439
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=37.69 E-value=1.3e+02 Score=28.41 Aligned_cols=92 Identities=15% Similarity=0.261 Sum_probs=59.3
Q ss_pred hCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHH
Q 040733 499 ANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFA 578 (643)
Q Consensus 499 A~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA 578 (643)
|....+-|+++|-..++..+..+..+. ++++.++.++|.. .+....++..-. . .....| ..--..+|
T Consensus 73 a~~~~~~Iavv~~~~~~~~~~~~~~ll--~~~i~~~~~~~~~-e~~~~i~~~~~~-G-~~viVG--------g~~~~~~A 139 (176)
T PF06506_consen 73 AKKYGPKIAVVGYPNIIPGLESIEELL--GVDIKIYPYDSEE-EIEAAIKQAKAE-G-VDVIVG--------GGVVCRLA 139 (176)
T ss_dssp CCCCTSEEEEEEESS-SCCHHHHHHHH--T-EEEEEEESSHH-HHHHHHHHHHHT-T---EEEE--------SHHHHHHH
T ss_pred HHhcCCcEEEEecccccHHHHHHHHHh--CCceEEEEECCHH-HHHHHHHHHHHc-C-CcEEEC--------CHHHHHHH
Confidence 333456799999999998888887765 7899999998743 332222222111 0 111111 11347899
Q ss_pred hHCCCCEEEeCC-hhHHHHHHHHHHh
Q 040733 579 EACGIPAARVTK-KKDVRAAIQLMLE 603 (643)
Q Consensus 579 ~a~G~~~~~V~~-~~eL~~al~~al~ 603 (643)
+.+|++++.+.+ .+.++.||++|+.
T Consensus 140 ~~~gl~~v~i~sg~esi~~Al~eA~~ 165 (176)
T PF06506_consen 140 RKLGLPGVLIESGEESIRRALEEALR 165 (176)
T ss_dssp HHTTSEEEESS--HHHHHHHHHHHHH
T ss_pred HHcCCcEEEEEecHHHHHHHHHHHHH
Confidence 999999999988 7889999998864
No 440
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=37.18 E-value=3.1e+02 Score=25.52 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc----
Q 040733 438 YAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS---- 513 (643)
Q Consensus 438 ~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs---- 513 (643)
.+.+...+++++ +..|..|.|+......+++.-..+.+++++ +++.|.=.. ..++-.++++-|.-.
T Consensus 8 ~IA~~A~~~I~~-~~~Ifld~GtT~~~la~~L~~~~~ltVvTn--------sl~ia~~l~-~~~~~~vi~~GG~~~~~~~ 77 (161)
T PF00455_consen 8 AIARKAASLIED-GDTIFLDSGTTTLELAKYLPDKKNLTVVTN--------SLPIANELS-ENPNIEVILLGGEVNPKSL 77 (161)
T ss_pred HHHHHHHHhCCC-CCEEEEECchHHHHHHHHhhcCCceEEEEC--------CHHHHHHHH-hcCceEEEEeCCEEEcCCC
Confidence 455666677888 556667889988888898887777788876 344443322 234667777777332
Q ss_pred ccCCHHHHHHHHHhCCCeEEE
Q 040733 514 FIMNLQELAAIKAENIPVKIL 534 (643)
Q Consensus 514 f~m~~~eL~Ta~~~~lpv~iv 534 (643)
.+.....+....+++.+..++
T Consensus 78 ~~~G~~a~~~l~~~~~d~afi 98 (161)
T PF00455_consen 78 SFVGPIALEALRQFRFDKAFI 98 (161)
T ss_pred cEECchHHHHHHhhccceEEe
Confidence 223345567777788775554
No 441
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=36.72 E-value=87 Score=37.45 Aligned_cols=140 Identities=14% Similarity=0.069 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhC------CCcEEEEcCCchh-----hH--HHHHHHHHHhCCceeec-CCCCCCCCCCCCCcccccC
Q 040733 257 DELALRQTLKLIVES------KNPVLCVGGGCLN-----SS--EELRKFVGLTGIPVTCT-TMGLGLFPCTDELCLRMVG 322 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A------krPvIl~G~g~~~-----~~--~~l~~lae~lg~PV~tt-~~gkg~~~~~hpl~lG~~g 322 (643)
-+++++.+++.|++. +.-.++.|.|..+ .. ..+.+|+..+|-..-.. ....+.....+....|..
T Consensus 125 WdeAl~~ia~kl~~i~~~~G~~sv~~~~g~g~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~- 203 (797)
T TIGR02166 125 WDEATDTIADNLKRIIEKYGNEAIYVNYGTGTTGGTMSRSWPPTAVARLLNLCGGYLNQYGSYSTAQINEAMPYTYGIS- 203 (797)
T ss_pred HHHHHHHHHHHHHHHHHHhCccceEeecccccccccccccchhHHHHHHHHHhCCccccCCCeecchhhcccceeEeec-
Confidence 467888888877663 2233345554321 11 24677887777432110 000011111222333321
Q ss_pred CCCcHHHHHhhhcCCEEEEecCccCcccc------Cccc-cc-cCCceEEEEcCCcccccCCCCCCeeEe----cCHHHH
Q 040733 323 MFGTVYANYAVNECDLLLAAGVRFNERMT------SKLE-DF-ATRAKIVHIDIDSNEIGKVKLPDVSIC----ADAKLV 390 (643)
Q Consensus 323 ~~~~~~~~~~l~~aDlvL~vG~~~~~~~t------~~~~-~~-~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D~~~~ 390 (643)
..+.. ..-+.++|+||.+|+...+... ..+. .. ...+|+|.||+....... ..+|..|. .|...+
T Consensus 204 ~~~~~--~~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa-~~Ad~~l~irPGtD~al~ 280 (797)
T TIGR02166 204 ADGSS--LDDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVA-GREDEWIPIRPGTDAALV 280 (797)
T ss_pred CCCCC--HHHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccch-hcCCEEECCCCCCHHHHH
Confidence 11111 2346899999999998643211 1111 11 235799999988765432 12343333 577666
Q ss_pred HHHHHHHHhh
Q 040733 391 FNRMNMILES 400 (643)
Q Consensus 391 L~~L~~~l~~ 400 (643)
+..+...+++
T Consensus 281 ~a~~~~ii~e 290 (797)
T TIGR02166 281 AAIAYVMISE 290 (797)
T ss_pred HHHHHHHHHC
Confidence 6555444443
No 442
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=36.58 E-value=1e+02 Score=33.52 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHhcC-----CCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEE
Q 040733 434 IPPQYAIQILNELT-----DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDI 508 (643)
Q Consensus 434 i~~~~~~~~L~~~l-----~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i 508 (643)
..+..++..+.+.+ .+ ..+++++.++.- ++ .|.+|+++.+.|.||.++. -+++..+..|+++
T Consensus 168 ~~~~~I~~~~~~~~~~~~l~g-k~vlITgG~T~E-----~I---D~VR~isN~SSG~~G~aiA----~~l~~~Ga~V~~v 234 (399)
T PRK05579 168 AEPEEIVAAAERALSPKDLAG-KRVLITAGPTRE-----PI---DPVRYITNRSSGKMGYALA----RAAARRGADVTLV 234 (399)
T ss_pred CCHHHHHHHHHHHhhhcccCC-CEEEEeCCCccc-----cc---cceeeeccCCcchHHHHHH----HHHHHCCCEEEEe
Confidence 45556656555443 33 567777766431 12 3889999887666665444 4444457789888
Q ss_pred ecCcccc----------CCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 509 DGDGSFI----------MNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 509 ~GDGsf~----------m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|+.+.. -+..|+..+.....+-.=+++||-+.+
T Consensus 235 ~~~~~~~~~~~~~~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~ 278 (399)
T PRK05579 235 SGPVNLPTPAGVKRIDVESAQEMLDAVLAALPQADIFIMAAAVA 278 (399)
T ss_pred CCCccccCCCCcEEEccCCHHHHHHHHHHhcCCCCEEEEccccc
Confidence 8876431 235666666655444344567777654
No 443
>PLN02537 diaminopimelate decarboxylase
Probab=36.41 E-value=1.6e+02 Score=32.15 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=54.1
Q ss_pred cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC
Q 040733 510 GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT 589 (643)
Q Consensus 510 GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~ 589 (643)
|.|.+.-+..|+..+...+.+--.+|+|+.. ...+.-+.|...|+. +.++
T Consensus 66 G~~~~~~S~~E~~~al~~G~~~~~ii~~g~~-----------------------------k~~~~l~~a~~~gv~-i~id 115 (410)
T PLN02537 66 GCGAVLVSGNELRLALRAGFDPTRCIFNGNG-----------------------------KLLEDLVLAAQEGVF-VNVD 115 (410)
T ss_pred CCCEEEeCHHHHHHHHHcCCCcceEEEECCC-----------------------------CCHHHHHHHHHCCCE-EEEC
Confidence 5666677789999999889888888888542 112344666777884 8999
Q ss_pred ChhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 590 KKKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 590 ~~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
+.+||+...+.+.+.+.+.=|-+.+++
T Consensus 116 s~~el~~l~~~a~~~~~~~~v~lRvnp 142 (410)
T PLN02537 116 SEFDLENIVEAARIAGKKVNVLLRINP 142 (410)
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEECC
Confidence 999998887665555554445556654
No 444
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=36.04 E-value=92 Score=33.12 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=26.0
Q ss_pred HHHHHHHHHHh-CCCcEEEEcCCch-hhHHHHHHHHHHhCCce
Q 040733 260 ALRQTLKLIVE-SKNPVLCVGGGCL-NSSEELRKFVGLTGIPV 300 (643)
Q Consensus 260 ~i~~~~~~L~~-AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV 300 (643)
.++++.+.+.+ .||++|+.|.+.. +..+.+.+..+..|+.+
T Consensus 10 ~~~~l~~~~~~~~~r~livt~~~~~~~~~~~v~~~L~~~~i~~ 52 (351)
T cd08170 10 ALDELGEYLARLGKRALIIADEFVLDLVGAKIEESLAAAGIDA 52 (351)
T ss_pred HHHHHHHHHHHhCCeEEEEECHHHHHHHHHHHHHHHHhCCCeE
Confidence 34444444443 5899999887665 44556666666667765
No 445
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=35.96 E-value=88 Score=30.33 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=28.1
Q ss_pred CeEEEEecCccccCCHHHHHHHHHhC---CCeEEEEEeC-CCchhhH
Q 040733 503 AIVVDIDGDGSFIMNLQELAAIKAEN---IPVKILLINN-QYLGMNV 545 (643)
Q Consensus 503 ~~Vv~i~GDGsf~m~~~eL~Ta~~~~---lpv~ivV~NN-~~~g~~~ 545 (643)
+-+|++.|-|| |+|.|..+.+-+ .-+..|+-|| +.|++.+
T Consensus 2 ki~VlaSG~GS---Nlqaiida~~~~~~~a~i~~Visd~~~A~~ler 45 (200)
T COG0299 2 KIAVLASGNGS---NLQAIIDAIKGGKLDAEIVAVISDKADAYALER 45 (200)
T ss_pred eEEEEEeCCcc---cHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHH
Confidence 46888999998 567777777643 3477777788 6677654
No 446
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=35.86 E-value=32 Score=34.38 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=51.7
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKS 568 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~ 568 (643)
++.+++||+++. .+++..+-=.|+.+-.--|.++.-..+|+++++.|-.+-+- |.
T Consensus 48 A~~~~~GAs~aG--~ra~t~ts~~Gl~lm~e~l~~a~~~~~P~V~~~~~R~g~~~------------------g~----- 102 (230)
T PF01855_consen 48 AMEAAIGASAAG--ARAMTATSGPGLNLMAEPLYWAAGTELPIVIVVVQRAGPSP------------------GL----- 102 (230)
T ss_dssp HHHHHHHHHHTT----EEEEEECCHHHHHCCCHHHHHHTT--EEEEEEEB---SS------------------SB-----
T ss_pred HHHHHHHHHhcC--CceEEeecCCcccccHhHHHHHHHcCCCEEEEEEECCCCCC------------------CC-----
Confidence 688999999884 55555555555555445588888999999999987554111 00
Q ss_pred CCCCCHH--HHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEE
Q 040733 569 EIFPDML--KFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLL 610 (643)
Q Consensus 569 ~~~~d~~--~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lI 610 (643)
....+.. -.++-+|..-....+.+|.-+....|++ ..-|+++
T Consensus 103 ~~~~~q~D~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv 150 (230)
T PF01855_consen 103 STQPEQDDLMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIV 150 (230)
T ss_dssp --SB-SHHHHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred cCcCChhHHHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 0111111 1222556666677788777665555543 3456554
No 447
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=35.22 E-value=1.1e+02 Score=35.13 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=37.6
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCc
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYL 541 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~ 541 (643)
++.+++||+++. .+++..+==.||..-..-|..+.-..+|+++++.|..|-
T Consensus 249 A~~~a~GAs~aG--~Ra~taTSg~Gl~lm~E~l~~a~~~~~P~Vi~~~~R~gp 299 (562)
T TIGR03710 249 AINMAIGASYAG--ARAMTATSGPGFALMTEALGLAGMTETPLVIVDVQRGGP 299 (562)
T ss_pred HHHHHHhHHhcC--CceeecCCCCChhHhHHHHhHHHhccCCEEEEEcccCCC
Confidence 788999999984 455555555555554455788888899999999888753
No 448
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=35.11 E-value=1.1e+02 Score=29.47 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=20.8
Q ss_pred CeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCC
Q 040733 503 AIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539 (643)
Q Consensus 503 ~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~ 539 (643)
|-+|.+.|.|+.+-.+-+-+.....+..+..||-|+.
T Consensus 2 riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~ 38 (190)
T TIGR00639 2 RIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKP 38 (190)
T ss_pred eEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCc
Confidence 4567788888877665444433333334555455653
No 449
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=35.07 E-value=40 Score=30.21 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCC
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~ 305 (643)
+++.-.+..+.+-..+=|.|++-.|. ...+++.++|++.++|++.|..
T Consensus 66 ~~~~r~~~l~~l~~~~~P~iIvt~~~-~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 66 DEEERKERLEKLFSYNPPCIIVTRGL-EPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp -HHHHCCHHHHHCTTT-S-EEEETTT----HHHHHHHHHCT--EEEESS
T ss_pred CHHHHHHHHHHHhCCCCCEEEEECcC-CCCHHHHHHHHHhCCcEEEcCC
Confidence 55555666777777888999988766 4678899999999999998764
No 450
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=34.98 E-value=3.5e+02 Score=24.51 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=63.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecC--ChhHHHHHHHHHHHHhCCcEEEEEccc-hh-h
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPR--HEQGGIFAAEGYARSSGTPGVCLVSSG-PG-V 144 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~--hE~~A~~~A~Gyar~sg~~gv~~~t~G-pG-~ 144 (643)
..+--+.+++.|.+.|++.|+.+.+. .++...+.+.+++++... +...+..+..|.....+.-.++++.+- |- -
T Consensus 23 g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~ 100 (160)
T PF12804_consen 23 GKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERYGIKVVVDPEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLS 100 (160)
T ss_dssp TEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTTTSEEEE-STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-
T ss_pred CccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhccCceEEEeccccCChHHHHHHHHHhcccCCCcEEEeCCccccC
Confidence 45788999999999999999999887 466666666668888776 344455555555555334455555544 34 4
Q ss_pred HHHHHHHHHhhh-CCCCEEEEeC
Q 040733 145 TNIMTGLMDAYS-DSIPILAITG 166 (643)
Q Consensus 145 ~N~~~gl~~A~~-~~vPvlvItg 166 (643)
.+.+..+.+++. ++..+++.+-
T Consensus 101 ~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 101 PELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHhccCCcEEEEEE
Confidence 566777777765 3445555543
No 451
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=34.96 E-value=78 Score=33.43 Aligned_cols=50 Identities=28% Similarity=0.448 Sum_probs=38.2
Q ss_pred cccCCCC-CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEE
Q 040733 62 SRFAPDK-PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSI 111 (643)
Q Consensus 62 ~~~~~~~-~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i 111 (643)
+|+.+.. ....-+.+++.|++++|+.++.+-|+.++.-...|.+.++++|
T Consensus 71 sR~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vi 121 (324)
T TIGR02483 71 SRTNPFKYEEDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADKGLPVV 121 (324)
T ss_pred CCCCccccCHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhcCCCEE
Confidence 4554432 2357789999999999999999999999988888876444444
No 452
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=34.21 E-value=21 Score=36.38 Aligned_cols=142 Identities=15% Similarity=0.121 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCC--cHHHHHHHhhCCCeEEecCC-----------hhHHHHHHHHH-HHHhCCcEEEE
Q 040733 72 GADIIVEALERQGVTTVFAYPGGA--SIEIHQSLTRSNIRSILPRH-----------EQGGIFAAEGY-ARSSGTPGVCL 137 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~--~~~l~~al~~~~i~~i~~~h-----------E~~A~~~A~Gy-ar~sg~~gv~~ 137 (643)
=..+.++.+.+.|.+.|...-+.. .+=+.+.|.. ..++|.... |.--+.+=.|| ||+.+..+++
T Consensus 38 evnAaiega~~aGa~eIvV~DsHg~~~Nll~e~L~~-~a~lI~G~~~rp~~Mm~Gld~s~D~v~fiGYHa~ag~~~gvL- 115 (263)
T cd08770 38 EVVAACEGAIEAGATEIVVKDAHGSGRNILPSKLPD-NVKLIRGWSGHPYCMVEGLDESFDAVMFIGYHSAAGSPGNPL- 115 (263)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCccCcChHHCCc-ceEEEeCCCCCcchHhhccccCccEEEEEecCCccCCCCCcc-
Confidence 455788999999999999887532 2234444432 266664322 22222233453 4443333442
Q ss_pred Eccchh-hHH-----------HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHH
Q 040733 138 VSSGPG-VTN-----------IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPR 205 (643)
Q Consensus 138 ~t~GpG-~~N-----------~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~ 205 (643)
.|+--| ..+ .+++. -|-.-++||+++|||......-+..+..+..+.+-+.+. ++....+|++..+
T Consensus 116 ~HT~~~~~~~v~iNG~~~gE~~lna~-~Ag~~gVPV~lvsGD~~~~~ea~~~~P~~~tv~vK~~~g-~aa~~~~p~~a~~ 193 (263)
T cd08770 116 AHTLTGGVSYVKINGEIASEFLINAY-TAAYLGVPVVFVSGDAGLCAEAKELNPNIVTVPVKEGFG-GATISIHPGLACK 193 (263)
T ss_pred ccccccceEEEEECCEEcCHHHHHHH-HHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEeeeeec-cccccCCHHHHHH
Confidence 333211 222 22222 234569999999998754321111111111112222333 4455567888888
Q ss_pred HHHHHHHHhhcC
Q 040733 206 IIKEAFFIATSG 217 (643)
Q Consensus 206 ~l~~A~~~A~s~ 217 (643)
.|+++.+.|+..
T Consensus 194 ~I~~~~~~Al~~ 205 (263)
T cd08770 194 EIRKGVKKALSG 205 (263)
T ss_pred HHHHHHHHHHhc
Confidence 999999888543
No 453
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=34.19 E-value=1.3e+02 Score=32.49 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEec-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILP-RHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~-~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
..-+++.+.|++. -=.+-..|+.....+++++.+.|+.++.. -||..- ..=+.-++..|-.++.=+-.-||++|++.
T Consensus 57 ~d~~al~~li~~~-d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~nv~a 134 (389)
T COG1748 57 ADVDALVALIKDF-DLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGITNVLA 134 (389)
T ss_pred cChHHHHHHHhcC-CEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchHHHHH
Confidence 3456788888888 33566778889999999999999777744 444442 33344444455444444445599999999
Q ss_pred HHHHhhhC
Q 040733 150 GLMDAYSD 157 (643)
Q Consensus 150 gl~~A~~~ 157 (643)
+-+-+..+
T Consensus 135 ~~a~~~~~ 142 (389)
T COG1748 135 AYAAKELF 142 (389)
T ss_pred HHHHHHhh
Confidence 99988888
No 454
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=34.17 E-value=1.4e+02 Score=36.13 Aligned_cols=103 Identities=14% Similarity=0.068 Sum_probs=60.4
Q ss_pred HHHHHHHHh---CCc------EEEEEccchhhH----HHHHHHHHhhhCCCC---EEEEeCCCcccccCCC---CCCccC
Q 040733 122 AAEGYARSS---GTP------GVCLVSSGPGVT----NIMTGLMDAYSDSIP---ILAITGQVSQKLLGTD---AFQEIP 182 (643)
Q Consensus 122 ~A~Gyar~s---g~~------gv~~~t~GpG~~----N~~~gl~~A~~~~vP---vlvItg~~~~~~~g~~---~~Q~~d 182 (643)
.|.|.||+. +.- .|+++..|=|++ -..-++-=|...+.| +|+|+-+.-.. +.+. ......
T Consensus 322 va~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g-~tT~~~~~~s~~~ 400 (924)
T PRK09404 322 VVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIG-FTTSPPDDRSTPY 400 (924)
T ss_pred eehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-EeeCHHHhccchh
Confidence 456666654 223 577777776664 244455556677887 99988643211 1111 011112
Q ss_pred HHHHhhccceeeeEe--CCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 183 VVEVTRYMTKHNYLV--LDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 183 ~~~~~~~~tk~~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
..+..+.+--..+.| .+++.+..+++.|++.++.+. |||.|++
T Consensus 401 ~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~-gPvlIE~ 445 (924)
T PRK09404 401 CTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFK-KDVVIDL 445 (924)
T ss_pred HHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcC-cCEEEEE
Confidence 223333332223343 567788889999999998886 9999987
No 455
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=34.03 E-value=57 Score=32.36 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=63.4
Q ss_pred Cccccc-chHHHHHHHHhCCCCeEEEEecCccccC-C-HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccccccc
Q 040733 483 FGSMGF-GLPAAMGAAVANPGAIVVDIDGDGSFIM-N-LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANS 559 (643)
Q Consensus 483 ~g~mG~-glpaAiGaalA~p~~~Vv~i~GDGsf~m-~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~ 559 (643)
-|..|- ...|+||++||..+++|++|.-|-|+-- + ++.++. .+++=++|== -|-.+ ++++.-++.+..+
T Consensus 11 KGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~------RiVYd~vdVi-~g~~~-l~QALIkDKr~~n 82 (272)
T COG2894 11 KGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLEN------RIVYDLVDVI-EGEAT-LNQALIKDKRLEN 82 (272)
T ss_pred CCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccc------eeeeeehhhh-cCccc-hhhHhhccccCCc
Confidence 366776 6789999999999999999999987642 1 222222 1222122110 01111 1223333333333
Q ss_pred ccCCCCCCC--CCCC---CHHHHHhH---CCCCEEEeCChhHHHHHHHHHHh
Q 040733 560 FLGDPLRKS--EIFP---DMLKFAEA---CGIPAARVTKKKDVRAAIQLMLE 603 (643)
Q Consensus 560 ~~g~p~~~~--~~~~---d~~~lA~a---~G~~~~~V~~~~eL~~al~~al~ 603 (643)
.+-.|++.. -... .+.++.+. .+..|+.+++|.-++.-.+.|+.
T Consensus 83 L~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~A~~ 134 (272)
T COG2894 83 LFLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKNAVY 134 (272)
T ss_pred eEecccccccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHHHhhhh
Confidence 333444321 1112 34444333 56899999999999888887765
No 456
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=33.91 E-value=1.9e+02 Score=27.22 Aligned_cols=90 Identities=8% Similarity=0.045 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcHHHHHHH----hhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSL----TRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al----~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
--+.+++.|.+.+-=++||+-++ ..+.+.+ ...++..+...+ .. ....+.+=.+++.+...-..+.
T Consensus 22 ~l~~~~~~i~~a~~I~i~G~G~S--~~~A~~~~~~l~~~g~~~~~~~~-~~-------~~~~~~~D~vI~iS~sG~t~~~ 91 (179)
T cd05005 22 ELDKLISAILNAKRIFVYGAGRS--GLVAKAFAMRLMHLGLNVYVVGE-TT-------TPAIGPGDLLIAISGSGETSSV 91 (179)
T ss_pred HHHHHHHHHHhCCeEEEEecChh--HHHHHHHHHHHHhCCCeEEEeCC-CC-------CCCCCCCCEEEEEcCCCCcHHH
Confidence 44567888888765566665333 3444433 334554444332 11 1123333344455555556677
Q ss_pred HHHHHHhhhCCCCEEEEeCCCccc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQK 171 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~ 171 (643)
+..+..|...++|+|.||+.....
T Consensus 92 i~~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 92 VNAAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCc
Confidence 889999999999999999865543
No 457
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=33.56 E-value=2.9e+02 Score=26.63 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHHHHHh-------ccccCC-CeEEecCCCcc-------cccchHHH-HHHHHhC
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMWAIQF-------YMYKRA-RQLLTSSGFGS-------MGFGLPAA-MGAAVAN 500 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~-------~~~~~p-~~~~~~~~~g~-------mG~glpaA-iGaalA~ 500 (643)
..+++.|.+.+..+..|++.+.|.+...+..+ ++..++ ........... .|+..-.. .=++.+.
T Consensus 31 ~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~ 110 (192)
T PRK00414 31 QRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYDYVFSRYVEAVGR 110 (192)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEecCcHHHHhhhhccCCHHHHHHHHHHHhCC
Confidence 45666776666444788888999886633322 111122 12211111000 01100001 1123446
Q ss_pred CCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeC
Q 040733 501 PGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538 (643)
Q Consensus 501 p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN 538 (643)
++--++.|...|.---.+.-+..+++.|.+++.|--|+
T Consensus 111 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 111 EGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 66667778888776666777888888888866555443
No 458
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=33.43 E-value=1.4e+02 Score=32.23 Aligned_cols=42 Identities=7% Similarity=0.116 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHh--CCCcEEEEcCCch--hhHHHHHHHHHHhCCce
Q 040733 259 LALRQTLKLIVE--SKNPVLCVGGGCL--NSSEELRKFVGLTGIPV 300 (643)
Q Consensus 259 ~~i~~~~~~L~~--AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV 300 (643)
..++++.+.+.+ +||++|+.|.+.. +..+.+.+..++.|+.+
T Consensus 17 g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~ 62 (383)
T PRK09860 17 DSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFS 62 (383)
T ss_pred CHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeE
Confidence 455666565554 4788888887654 45667777777778765
No 459
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=32.60 E-value=2.4e+02 Score=24.84 Aligned_cols=81 Identities=22% Similarity=0.276 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHhCCceeecCCC-CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCcc-CccccCccccccCCce
Q 040733 285 SSEELRKFVGLTGIPVTCTTMG-LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRF-NERMTSKLEDFATRAK 362 (643)
Q Consensus 285 ~~~~l~~lae~lg~PV~tt~~g-kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~-~~~~t~~~~~~~~~~~ 362 (643)
+.+.|++-+.+.|+.+.....| .|+. +++ ..+-+.++|+||++|... .+ ...| ...+
T Consensus 21 AAeaL~kAA~~~G~~i~VE~qg~~g~~---~~l------------t~~~i~~Ad~VIia~d~~~~~-----~~rF-~gk~ 79 (114)
T PRK10427 21 AAERLEKLCQLEKWGVKIETQGALGTE---NRL------------TDEDIRRADVVLLITDIELAG-----AERF-EHCR 79 (114)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCcC---CCC------------CHHHHHhCCEEEEEecCCCCc-----hhhh-CCCe
Confidence 5678999999999999644333 3322 222 134578999999999774 21 1123 2346
Q ss_pred EEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 363 IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 363 iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
+++++++..- .|+..+|+...+.+
T Consensus 80 v~~~s~~~ai------------~d~~~vl~~a~~~~ 103 (114)
T PRK10427 80 YVQCSIYAFL------------REPQRVMSAVRKVL 103 (114)
T ss_pred EEEecHHHHH------------HHHHHHHHHHHHHH
Confidence 7776554421 45566666655443
No 460
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=32.51 E-value=64 Score=35.02 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=36.3
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEe
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLIN 537 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~N 537 (643)
++.+|+||+++. .+++..+==.||.+-..-|..+.-..+|+++++.|
T Consensus 61 A~~~aiGAs~aG--aRa~TaTSg~Gl~lm~E~l~~aa~~~lPiVi~~~~ 107 (390)
T PRK08366 61 AMAACIGASAAG--ARAFTATSAQGLALMHEMLHWAAGARLPIVMVDVN 107 (390)
T ss_pred HHHHHHHHHhhC--CCeEeeeCcccHHHHhhHHHHHHhcCCCEEEEEec
Confidence 688899999884 56666666666766666789999999998887764
No 461
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=32.24 E-value=2e+02 Score=30.28 Aligned_cols=92 Identities=25% Similarity=0.389 Sum_probs=58.4
Q ss_pred hCCcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeee----Ee--CCc
Q 040733 130 SGTPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNY----LV--LDV 200 (643)
Q Consensus 130 sg~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~----~v--~~~ 200 (643)
.++.+||++-.|=|++| +.-++--|..-..|+|+++-..-. -+|+.+.... ....=+.+-.+ .| .+.
T Consensus 184 ~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~y-GMGTs~~Ras---a~teyykRG~yiPGl~VdGmdv 259 (394)
T KOG0225|consen 184 NREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHY-GMGTSAERAS---ASTEYYKRGDYIPGLKVDGMDV 259 (394)
T ss_pred ccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCC-ccCcchhhhh---cChHHHhccCCCCceEECCcch
Confidence 46789999999999999 566777788899999999964432 2232221110 11111222222 11 233
Q ss_pred CcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 201 DDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 201 ~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
-.+.++.+.|...+.++. ||..+++
T Consensus 260 laVr~a~KfA~~~~~~g~-GPilmE~ 284 (394)
T KOG0225|consen 260 LAVREATKFAKKYALEGK-GPILMEM 284 (394)
T ss_pred hhHHHHHHHHHHHHhcCC-CCEEEEE
Confidence 346677778888888876 9999987
No 462
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=32.11 E-value=1.5e+02 Score=31.80 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHh--CCCcEEEEcCCch--hhHHHHHHHHHHhCCcee
Q 040733 259 LALRQTLKLIVE--SKNPVLCVGGGCL--NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 259 ~~i~~~~~~L~~--AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~ 301 (643)
..++++.+.+.+ ++|++|+.|.+.. +..+.+.+..+..|+.+.
T Consensus 9 g~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~ 55 (375)
T cd08194 9 GAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESA 55 (375)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEE
Confidence 456666666653 5889999988765 345667777777777653
No 463
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=32.05 E-value=1.5e+02 Score=31.85 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHh--CCCcEEEEcCCch--hhHHHHHHHHHHhCCcee
Q 040733 259 LALRQTLKLIVE--SKNPVLCVGGGCL--NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 259 ~~i~~~~~~L~~--AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~ 301 (643)
..++++.+.+.+ .||++|+.|.+.. +..+.+.+..++.++.+.
T Consensus 12 g~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~ 58 (376)
T cd08193 12 GSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVT 58 (376)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEE
Confidence 345666666654 5889988888654 356777777777777653
No 464
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=31.74 E-value=1.8e+02 Score=31.37 Aligned_cols=43 Identities=14% Similarity=0.245 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHh-CCCcEEEEcCCch---hhHHHHHHHHHHhCCcee
Q 040733 259 LALRQTLKLIVE-SKNPVLCVGGGCL---NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 259 ~~i~~~~~~L~~-AkrPvIl~G~g~~---~~~~~l~~lae~lg~PV~ 301 (643)
..++++.+.+.+ .+|++|+.|.+.. +..+.+.+..++.|+.+.
T Consensus 12 g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~ 58 (380)
T cd08185 12 GKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVV 58 (380)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEE
Confidence 345566666654 4889999998762 456777777777777663
No 465
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=31.64 E-value=30 Score=31.99 Aligned_cols=70 Identities=27% Similarity=0.314 Sum_probs=47.6
Q ss_pred ccccCCCCCCcHHHHHHHHHHHCCCCE----EEEccCCCcHHHHH-HHhhCC-----------CeEEecCChhHHHHHHH
Q 040733 61 SSRFAPDKPRKGADIIVEALERQGVTT----VFAYPGGASIEIHQ-SLTRSN-----------IRSILPRHEQGGIFAAE 124 (643)
Q Consensus 61 ~~~~~~~~~~~~a~~lv~~L~~~GV~~----vFg~PG~~~~~l~~-al~~~~-----------i~~i~~~hE~~A~~~A~ 124 (643)
.+||+....-..-+--.+.|+++|++. ++-+||....|+.- .|.+.+ |+=-..++|..+..++.
T Consensus 19 ~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va~~~~~ 98 (152)
T COG0054 19 VARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGETYHFDYVANEVAR 98 (152)
T ss_pred EeehhHHHHHHHHHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCCccHHHHHHHHHH
Confidence 456654322222333457888899654 99999999999763 454443 33335678999999999
Q ss_pred HHHHHh
Q 040733 125 GYARSS 130 (643)
Q Consensus 125 Gyar~s 130 (643)
|.++++
T Consensus 99 gl~~vs 104 (152)
T COG0054 99 GLMDVS 104 (152)
T ss_pred HHHHHH
Confidence 999986
No 466
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=31.54 E-value=2.6e+02 Score=28.41 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=50.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCcHHHHHH----HhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 73 ADIIVEALERQGVTTVFAYPGGASIEIHQS----LTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 73 a~~lv~~L~~~GV~~vFg~PG~~~~~l~~a----l~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
-+.+++.|.+..-=++||+-+ +..+... +.+.++..+... +.. +........+..-.+++.+.+.-..+.+
T Consensus 118 i~~~~~~i~~a~~I~i~G~G~--S~~~a~~~~~~l~~~g~~~~~~~-~~~--~~~~~~~~~~~~D~vI~iS~sG~t~~~~ 192 (284)
T PRK11302 118 INRAVDLLTQAKKISFFGLGA--SAAVAHDAQNKFFRFNVPVVYFD-DIV--MQRMSCMNSSDGDVVVLISHTGRTKSLV 192 (284)
T ss_pred HHHHHHHHHcCCeEEEEEcch--HHHHHHHHHHHHHhcCCceEecC-CHH--HHHHHHHhCCCCCEEEEEeCCCCCHHHH
Confidence 455777887776445666633 3333332 344565555443 321 1222223333333333333333356677
Q ss_pred HHHHHhhhCCCCEEEEeC
Q 040733 149 TGLMDAYSDSIPILAITG 166 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg 166 (643)
..+..|...+.|+|+||+
T Consensus 193 ~~~~~ak~~g~~vI~IT~ 210 (284)
T PRK11302 193 ELAQLARENGATVIAITS 210 (284)
T ss_pred HHHHHHHHcCCeEEEECC
Confidence 899999999999999996
No 467
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=31.26 E-value=54 Score=33.93 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL 283 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~ 283 (643)
.++.+++++.++|+++|+.|++.|.|..
T Consensus 4 ~~~~~l~~l~~~i~~~~~ivvlTGAGiS 31 (285)
T PRK05333 4 ADPAALDALQDFVERHPRLFVLTGAGIS 31 (285)
T ss_pred ccHHHHHHHHHHHHhCCcEEEEeCCccc
Confidence 4778899999999999999999999986
No 468
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=31.25 E-value=1.2e+02 Score=31.62 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCC
Q 040733 260 ALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 260 ~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~ 305 (643)
..+.+.+++ ..++..+++|.........+..++++.++|+++...
T Consensus 55 a~~~~~~li-~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~ 99 (344)
T cd06348 55 AINAFQTLI-NKDRVLAIIGPTLSQQAFAADPIAERAGVPVVGPSN 99 (344)
T ss_pred HHHHHHHHh-hhcCceEEECCCCcHHHHhhhHHHHhCCCCEEeccC
Confidence 344444554 456788889986655556677899999999997543
No 469
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=31.24 E-value=76 Score=33.05 Aligned_cols=48 Identities=25% Similarity=0.273 Sum_probs=39.0
Q ss_pred CCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 570 IFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 570 ~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
..+|.+++|+-.--..+.|..+..+..++++++. .+||+|||+++|-+
T Consensus 115 qavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~rpgpvlidlp~dvq 167 (592)
T COG3960 115 QAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQ 167 (592)
T ss_pred hhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCCCCCeEEecccceE
Confidence 5689999999887778888888888888888763 67899998887654
No 470
>COG0618 Exopolyphosphatase-related proteins [General function prediction only]
Probab=31.19 E-value=3.7e+02 Score=28.38 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEcC----CchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhh
Q 040733 259 LALRQTLKLIVESKNPVLCVGG----GCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVN 334 (643)
Q Consensus 259 ~~i~~~~~~L~~AkrPvIl~G~----g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~ 334 (643)
..+.++.+.+....+-+|+.=. -|.++.-.|.++++.++...-.-..|+-..++...++... +..-....+.-..
T Consensus 4 ~~~~~~~~~i~~~~~i~i~~H~nPD~DalgSa~aL~~ll~~~~~~~~v~~~G~~~~~e~~~~~~~~-~~~~~~~~~~~~~ 82 (332)
T COG0618 4 RDLAELLELIKAHDKILILTHENPDPDALGSALALAELLKDLGKNKEVLYVGPITHPENRAFLNLL-GDELERIEDDPLD 82 (332)
T ss_pred hHHHHHHHHHhcCCeEEEEeCCCCCccHHHHHHHHHHHHHHhCCCceEEEecccCCcchHhhhhhc-ccccccccCCCcc
Confidence 3455666777665555554422 2336677788999998874433344444444433333221 1100000012356
Q ss_pred cCCEEEEecCccCccccCccccccCCceEEEEcCCcc
Q 040733 335 ECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSN 371 (643)
Q Consensus 335 ~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~ 371 (643)
+.|+++++.+...++...... +....++|.||..+.
T Consensus 83 ~~~~~iivDt~~~~ri~~~~~-~~~~~~~ivIDHH~~ 118 (332)
T COG0618 83 DYDLVIIVDTANLPRIGDQEL-LLDSKKVIVIDHHPG 118 (332)
T ss_pred cCCEEEEECCCCCCCcccccc-cccCCceEEEeCCCC
Confidence 889999999876444432211 111267899998884
No 471
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=30.98 E-value=3.6e+02 Score=27.66 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHh----hCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH-
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLT----RSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT- 145 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~----~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~- 145 (643)
.--+..++.|.+..=-++|| ++.+..+...+. +-|++.+...+..... .+....+.=-|+++-|-.|-+
T Consensus 118 ~~l~~av~~L~~A~rI~~~G--~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~----~~~~~~~~~Dv~i~iS~sG~t~ 191 (281)
T COG1737 118 EALERAVELLAKARRIYFFG--LGSSGLVASDLAYKLMRIGLNVVALSDTHGQL----MQLALLTPGDVVIAISFSGYTR 191 (281)
T ss_pred HHHHHHHHHHHcCCeEEEEE--echhHHHHHHHHHHHHHcCCceeEecchHHHH----HHHHhCCCCCEEEEEeCCCCcH
Confidence 34456778888886667777 555566665543 4455555555544333 244444433355554455544
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcc
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQ 170 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~ 170 (643)
-.+..+..|...++|+|.||.....
T Consensus 192 e~i~~a~~ak~~ga~vIaiT~~~~s 216 (281)
T COG1737 192 EIVEAAELAKERGAKVIAITDSADS 216 (281)
T ss_pred HHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 4667888999999999999986443
No 472
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=30.83 E-value=1.3e+02 Score=35.97 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=39.4
Q ss_pred hhhcCCEEEEecCccCcc-cc-----Cccc-cc-cCCceEEEEcCCcccccCCCCCCee--Ee--cCHHHHHHHHHHHHh
Q 040733 332 AVNECDLLLAAGVRFNER-MT-----SKLE-DF-ATRAKIVHIDIDSNEIGKVKLPDVS--IC--ADAKLVFNRMNMILE 399 (643)
Q Consensus 332 ~l~~aDlvL~vG~~~~~~-~t-----~~~~-~~-~~~~~iI~Id~d~~~i~~~~~~~~~--i~--~D~~~~L~~L~~~l~ 399 (643)
-+.++|+||++|+...+. .. ..+. .. ...+|+|.||+........ .+|.. |. .|...++..+...++
T Consensus 228 D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~-~AD~~l~irPGTD~al~lam~~~ii~ 306 (814)
T PRK14990 228 DIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAG-REDEWIPIRPGTDAALVNGLAYVMIT 306 (814)
T ss_pred HHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccc-cCCeEECCCCCcHHHHHHHHHHHHHH
Confidence 467999999999986432 11 1111 11 1357999999888776431 23333 33 466655555444444
Q ss_pred h
Q 040733 400 S 400 (643)
Q Consensus 400 ~ 400 (643)
+
T Consensus 307 e 307 (814)
T PRK14990 307 E 307 (814)
T ss_pred c
Confidence 3
No 473
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=30.82 E-value=2e+02 Score=27.04 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCchh-hHHHHHHHHHHhCCceee
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCLN-SSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~~-~~~~l~~lae~lg~PV~t 302 (643)
.+.+.+++++++|.+++| +.+.|.|... ....+.....++|.++..
T Consensus 15 l~~~~~~~~~~~l~~a~~-I~i~G~G~S~~~A~~~~~~l~~~g~~~~~ 61 (179)
T TIGR03127 15 IDEEELDKLADKIIKAKR-IFVAGAGRSGLVGKAFAMRLMHLGFNVYV 61 (179)
T ss_pred CCHHHHHHHHHHHHhCCE-EEEEecCHHHHHHHHHHHHHHhCCCeEEE
Confidence 367889999999999875 7777877542 233333333456776654
No 474
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=30.62 E-value=5.2e+02 Score=26.58 Aligned_cols=78 Identities=10% Similarity=0.099 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHhCCC-cEEEEcCC--ch-hhH--HHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHH
Q 040733 256 PDELALRQTLKLIVESKN-PVLCVGGG--CL-NSS--EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYA 329 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~Akr-PvIl~G~g--~~-~~~--~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~ 329 (643)
-.++.+..+++++.++.- |++.--.| .. +.. .-+..+||.+|++++.-- +++-+-. +.+.. ....
T Consensus 58 ThPevv~Av~~~v~e~g~ep~vgd~pg~~st~~vlk~~Gi~dla~~~~~~iv~F~-~~~~~~~--s~~~~------~~~i 128 (293)
T COG2006 58 THPEVVAAVAEVVKEAGGEPVVGDSPGFGSTSGVLKTTGILDLAEALGLEIVNFD-TKRYVLG--SEWFQ------GLKI 128 (293)
T ss_pred cCHHHHHHHHHHHHHhCCcceEecCCCCccHHHHHHHhCHHHHHHHcCCceeeec-cCceEec--ccccc------Cccc
Confidence 467899999999988764 44443222 11 222 237899999999998643 2222111 11111 1123
Q ss_pred HHhhhcCCEEEEe
Q 040733 330 NYAVNECDLLLAA 342 (643)
Q Consensus 330 ~~~l~~aDlvL~v 342 (643)
.+.+.++|+||.+
T Consensus 129 a~~vl~aD~vI~L 141 (293)
T COG2006 129 AEPVLEADVVINL 141 (293)
T ss_pred chhhhccceEEec
Confidence 4567789988876
No 475
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=30.47 E-value=1e+02 Score=32.20 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=35.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhh
Q 040733 62 SRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR 105 (643)
Q Consensus 62 ~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~ 105 (643)
+|+.+......-+.+++.|+++|++.++.+-|+.++.-...|.+
T Consensus 69 sR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e 112 (301)
T TIGR02482 69 ARCPEFKTEEGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYE 112 (301)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHH
Confidence 44443333456788999999999999999999999888888866
No 476
>PRK02399 hypothetical protein; Provisional
Probab=30.25 E-value=2.1e+02 Score=31.06 Aligned_cols=138 Identities=24% Similarity=0.271 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHCCCCE-EEEccCCCcHHHHHHHhhCC-CeEE--ecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 71 KGADIIVEALERQGVTT-VFAYPGGASIEIHQSLTRSN-IRSI--LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~-vFg~PG~~~~~l~~al~~~~-i~~i--~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
...+.+.+.|++.|.+. ||=--|.. -.-++.|.+.+ +.-| .+.+|-.-- .-|. +...||.
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~G-GraME~Li~~G~~~gVlDlTttEv~d~--------l~GG----v~sagp~--- 262 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGTG-GRAMEKLIDSGLIAGVLDLTTTEVCDE--------LFGG----VLAAGPD--- 262 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCc-hHHHHHHHHcCCceEEEEcchHHHHHH--------HhCc----CccCCcc---
Confidence 46777888888888654 44333321 23455666666 6555 355554321 1121 2345665
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeC----CcCcHHHHHHHHHHHhhcCCCCeE
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVL----DVDDIPRIIKEAFFIATSGRPGPV 222 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~----~~~~i~~~l~~A~~~A~s~~~GPV 222 (643)
=+-.|-..++|.|+..|..+ +.+.++.++++..=--|++-+|+-.++ ++++..+ +-+.+..-+...+|||
T Consensus 263 ---Rl~Aa~~~gIP~Vvs~GalD--mVnFg~~~tvPe~f~~R~~~~HNp~vTlmRTt~eE~~~-~g~~ia~kLn~a~gpv 336 (406)
T PRK02399 263 ---RLEAAARTGIPQVVSPGALD--MVNFGAPDTVPEKFRGRLLYKHNPQVTLMRTTPEENRQ-IGRWIAEKLNRAKGPV 336 (406)
T ss_pred ---HHHHHHHcCCCEEecCCcee--eeecCCcccccHhhcCCcceecCCcceeeecCHHHHHH-HHHHHHHHHhcCCCCe
Confidence 34556677999999998654 445555565544322355566665554 4444222 2222333334457999
Q ss_pred EEEcccch
Q 040733 223 LIDIPVDV 230 (643)
Q Consensus 223 ~i~iP~Dv 230 (643)
.+-||..=
T Consensus 337 ~vllP~~G 344 (406)
T PRK02399 337 AFLIPLGG 344 (406)
T ss_pred EEEEeCCC
Confidence 99999763
No 477
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=30.21 E-value=2.6e+02 Score=28.66 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcH--HHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh-HHHH
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASI--EIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV-TNIM 148 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~--~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~-~N~~ 148 (643)
.-+.+++.|.+..--++||+-++... .+...|.+.|+..... ++......+. ... ++--++++-|..|. -+.+
T Consensus 129 ~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~-~d~~~~~~~~--~~~-~~~Dl~I~iS~sG~t~~~~ 204 (292)
T PRK11337 129 EFHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRIGVRCQAY-DDAHIMLMSA--ALL-QEGDVVLVVSHSGRTSDVI 204 (292)
T ss_pred HHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhCCCeEEEc-CCHHHHHHHH--hcC-CCCCEEEEEeCCCCCHHHH
Confidence 44567788888776678888654321 1223344445554433 3333222222 222 23344444455554 4577
Q ss_pred HHHHHhhhCCCCEEEEeCCCccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQK 171 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~ 171 (643)
..+..|...+.|+|+||+.....
T Consensus 205 ~~~~~ak~~g~~ii~IT~~~~s~ 227 (292)
T PRK11337 205 EAVELAKKNGAKIICITNSYHSP 227 (292)
T ss_pred HHHHHHHHCCCeEEEEeCCCCCh
Confidence 78888999999999999866543
No 478
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=30.01 E-value=4.9e+02 Score=26.18 Aligned_cols=88 Identities=13% Similarity=0.116 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHh-CCCCeEEEEecCc---c
Q 040733 438 YAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVA-NPGAIVVDIDGDG---S 513 (643)
Q Consensus 438 ~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA-~p~~~Vv~i~GDG---s 513 (643)
.+.+...+++++ +..|..|.|+...+.++++.-..+.+.+++ +++.+. .+. .++-.++++-|.- .
T Consensus 81 ~IA~~Aa~lI~~-g~tIflD~GtT~~~la~~L~~~~~ltvvTn--------sl~i~~--~l~~~~~~~villGG~~~~~~ 149 (252)
T PRK10681 81 RAAQLAATLVEP-NQTLFFDCGTTTPWIIEAIDNELPFTAVCY--------SLNTFL--ALQEKPHCRAILCGGEFHASN 149 (252)
T ss_pred HHHHHHHhhcCC-CCEEEEECCccHHHHHHhcCCCCCeEEEEC--------CHHHHH--HHhhCCCCEEEEECcEEecCc
Confidence 345555667777 555557888888888888865445677765 355443 343 4555666555442 1
Q ss_pred -ccCCHHHHHHHHHhCCCeEEEEE
Q 040733 514 -FIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 514 -f~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
.+.....+..+.+++.+..++=.
T Consensus 150 ~~~~G~~~~~~l~~~~~D~afig~ 173 (252)
T PRK10681 150 AIFKPLDFQQTLDNICPDIAFYSA 173 (252)
T ss_pred ceeeCHHHHHHHHhhCCCEEEEeC
Confidence 12223345677888888666543
No 479
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=29.85 E-value=98 Score=31.60 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCchh-hHHHHHHHHHHhCCcee
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCLN-SSEELRKFVGLTGIPVT 301 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~~-~~~~l~~lae~lg~PV~ 301 (643)
.+.+.+++++++|.++++ |+++|.|... ....+.....++|+++.
T Consensus 113 id~~~i~~~~~~i~~a~~-I~i~G~G~S~~~a~~~~~~l~~~g~~~~ 158 (284)
T PRK11302 113 LDPSAINRAVDLLTQAKK-ISFFGLGASAAVAHDAQNKFFRFNVPVV 158 (284)
T ss_pred cCHHHHHHHHHHHHcCCe-EEEEEcchHHHHHHHHHHHHHhcCCceE
Confidence 367889999999999976 8888887653 23333333345677765
No 480
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=29.53 E-value=1.8e+02 Score=31.08 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=26.9
Q ss_pred HHHHHHHHHHh--CCCcEEEEcCCchhhHHHHHHHHHHhCCcee
Q 040733 260 ALRQTLKLIVE--SKNPVLCVGGGCLNSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 260 ~i~~~~~~L~~--AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~ 301 (643)
.++++.+.+.+ .+|++|+.|.+.. ..+.+.+..++.++.+.
T Consensus 10 ~l~~l~~~~~~~g~~~~livtd~~~~-~~~~~~~~l~~~~~~~~ 52 (367)
T cd08182 10 AIAKLPSLLKGLGGKRVLLVTGPRSA-IASGLTDILKPLGTLVV 52 (367)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCchHH-HHHHHHHHHHHcCCeEE
Confidence 45666666664 4889999988765 44556666666676553
No 481
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=29.38 E-value=1.8e+02 Score=31.34 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=24.7
Q ss_pred HHHHHHHHHh-CCCcEEEEcCCch---hhHHHHHHHHHHhCCcee
Q 040733 261 LRQTLKLIVE-SKNPVLCVGGGCL---NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 261 i~~~~~~L~~-AkrPvIl~G~g~~---~~~~~l~~lae~lg~PV~ 301 (643)
++++.+++.+ .+|++|+.|.... +..+.+.+..+..|+.+.
T Consensus 17 ~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~ 61 (382)
T cd08187 17 ESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVV 61 (382)
T ss_pred HHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEE
Confidence 4444444443 5899999887543 334666666666666553
No 482
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=29.34 E-value=1.7e+02 Score=31.57 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHh--CCCcEEEEcCCch--hhHHHHHHHHHHhCCcee
Q 040733 259 LALRQTLKLIVE--SKNPVLCVGGGCL--NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 259 ~~i~~~~~~L~~--AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~ 301 (643)
..++++.+.+.+ .+|++|+.|.+.. +..+.+.+..+..|+.+.
T Consensus 14 g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~ 60 (377)
T cd08176 14 GAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYV 60 (377)
T ss_pred CHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEE
Confidence 456666666654 4788888887664 356777777777777653
No 483
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=29.12 E-value=1.8e+02 Score=31.59 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHh-hhcCCEEEEecCc
Q 040733 286 SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYA-VNECDLLLAAGVR 345 (643)
Q Consensus 286 ~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~-l~~aDlvL~vG~~ 345 (643)
-++|.+++++.++-++. +| -+.+|++|..|...+... +...|+.|++|+-
T Consensus 190 L~~l~~L~~ky~a~L~V--------DE--AHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTl 240 (388)
T COG0156 190 LPELVELAEKYGALLYV--------DE--AHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTL 240 (388)
T ss_pred HHHHHHHHHHhCcEEEE--------Ec--cccccccCCCCccHHHHhCCCCccceEEEEEc
Confidence 47899999999987764 33 345788887777666554 4556777777764
No 484
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=29.06 E-value=1.7e+02 Score=31.54 Aligned_cols=43 Identities=9% Similarity=0.205 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHh--CCCcEEEEcCCch--hhHHHHHHHHHHhCCcee
Q 040733 259 LALRQTLKLIVE--SKNPVLCVGGGCL--NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 259 ~~i~~~~~~L~~--AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~ 301 (643)
..++++.+.+.+ .||++|+.|.+.. +..+.+.+..++.|+.+.
T Consensus 15 g~l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~ 61 (379)
T TIGR02638 15 GAIEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYE 61 (379)
T ss_pred CHHHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEE
Confidence 345555555554 4789998888765 356778887787787664
No 485
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=28.94 E-value=1.6e+02 Score=31.24 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=26.3
Q ss_pred HHHHHHHHHHh-CCCcEEEEcCCch-hhHHHHHHHHHHhCCce
Q 040733 260 ALRQTLKLIVE-SKNPVLCVGGGCL-NSSEELRKFVGLTGIPV 300 (643)
Q Consensus 260 ~i~~~~~~L~~-AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV 300 (643)
.++++.+.+.+ .+|++|+.|.... ...+.+.+..++.|+.+
T Consensus 10 ~~~~l~~~~~~~~~r~liv~d~~~~~~~~~~v~~~l~~~~~~~ 52 (345)
T cd08171 10 AYKKIPEVCEKYGKKVVVIGGKTALAAAKDKIKAALEQSGIEI 52 (345)
T ss_pred HHHHHHHHHHhcCCEEEEEeCHHHHHHHHHHHHHHHHHCCCeE
Confidence 45555555554 4889999887554 34556666666667655
No 486
>TIGR02383 Hfq RNA chaperone Hfq. This model represents the RNA-binding pleiotropic regulator Hfq, a small, Sm-like protein of bacteria. It helps pair regulatory noncoding RNAs with complementary mRNA target regions. It enhances the elongation of poly(A) tails on mRNA. It appears also to protect RNase E recognition sites (A/U-rich sequences with adjacent stem-loop structures) from cleavage. Being pleiotropic, it differs in some of its activities in different species. Hfq binds the non-coding regulatory RNA DsrA (see Rfam RF00014) in the few species known to have it: Escherichia coli, Shigella flexneri, Salmonella spp. In Azorhizobium caulinodans, an hfq mutant is unable to express nifA, and Hfq is called NrfA, for nif regulatory factor (see PubMed:8197116). The name hfq reflects phenomenology as a host factor for phage Q-beta RNA replication.
Probab=28.92 E-value=69 Score=24.86 Aligned_cols=22 Identities=45% Similarity=0.857 Sum_probs=17.8
Q ss_pred CCHHH--HHHHHHhCCCeEEEEEe
Q 040733 516 MNLQE--LAAIKAENIPVKILLIN 537 (643)
Q Consensus 516 m~~~e--L~Ta~~~~lpv~ivV~N 537 (643)
+++|+ |..+++.+.|+++++.|
T Consensus 1 ~nlQd~fln~~r~~~~~Vti~L~n 24 (61)
T TIGR02383 1 QNLQDQFLNTLRKERIPVTVFLVN 24 (61)
T ss_pred CchHHHHHHHHHHcCCcEEEEEeC
Confidence 35676 77888999999998887
No 487
>PRK13683 hypothetical protein; Provisional
Probab=28.81 E-value=72 Score=26.36 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=25.0
Q ss_pred CChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 589 TKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 589 ~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
++.+.+-+.+.++++++.|.|+|..++..+..
T Consensus 23 edA~alYq~I~~am~sg~P~llELtCek~~~K 54 (87)
T PRK13683 23 EDAEALYQQIRQAMRSGNPRLLELTCEKVEDK 54 (87)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEecCcCCc
Confidence 34456667778888899999999999986543
No 488
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=28.76 E-value=1.3e+02 Score=27.70 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=44.8
Q ss_pred ccccCCCCCCcHHHHHHHHHHHCCCC----EEEEccCCCcHHHHH-HHhhCC-CeEE----------ecCChhHHHHHHH
Q 040733 61 SSRFAPDKPRKGADIIVEALERQGVT----TVFAYPGGASIEIHQ-SLTRSN-IRSI----------LPRHEQGGIFAAE 124 (643)
Q Consensus 61 ~~~~~~~~~~~~a~~lv~~L~~~GV~----~vFg~PG~~~~~l~~-al~~~~-i~~i----------~~~hE~~A~~~A~ 124 (643)
.+||+..-.-..-+--.+.|+++|++ .++-+||...+|+.- .+.+++ ..-| ..+.|..+-..+.
T Consensus 14 ~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H~e~V~~~v~~ 93 (141)
T PLN02404 14 VARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDTTHYDAVANSAAS 93 (141)
T ss_pred EecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCCchhHHHHHHHHH
Confidence 45665432223334455789999996 899999999999874 344332 2222 3345777777777
Q ss_pred HHHHHh
Q 040733 125 GYARSS 130 (643)
Q Consensus 125 Gyar~s 130 (643)
|..+++
T Consensus 94 gl~~vs 99 (141)
T PLN02404 94 GVLSAG 99 (141)
T ss_pred HHHHHH
Confidence 777765
No 489
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.68 E-value=1.3e+02 Score=31.15 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=18.3
Q ss_pred CeEEEEecCccccCCHHHHHHHHHh---CCCeEEEEEeC
Q 040733 503 AIVVDIDGDGSFIMNLQELAAIKAE---NIPVKILLINN 538 (643)
Q Consensus 503 ~~Vv~i~GDGsf~m~~~eL~Ta~~~---~lpv~ivV~NN 538 (643)
|-+|++.|.| .+++.|..+.+. +..|..|+-|+
T Consensus 91 ri~vl~Sg~g---snl~al~~~~~~~~~~~~i~~visn~ 126 (286)
T PRK06027 91 RVVILVSKED---HCLGDLLWRWRSGELPVEIAAVISNH 126 (286)
T ss_pred EEEEEEcCCC---CCHHHHHHHHHcCCCCcEEEEEEEcC
Confidence 5566666664 355666655444 34455555554
No 490
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=28.65 E-value=61 Score=29.22 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=13.5
Q ss_pred HHHHHHCCCCEEEEccCCCcHHHHHHH
Q 040733 77 VEALERQGVTTVFAYPGGASIEIHQSL 103 (643)
Q Consensus 77 v~~L~~~GV~~vFg~PG~~~~~l~~al 103 (643)
.+.|++.|++.+|+ ||+....+.+.|
T Consensus 101 ~~~L~~~Gv~~vf~-pgt~~~~i~~~l 126 (128)
T cd02072 101 EKRFKEMGFDRVFA-PGTPPEEAIADL 126 (128)
T ss_pred HHHHHHcCCCEEEC-cCCCHHHHHHHH
Confidence 34455555555555 455544444444
No 491
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=28.63 E-value=2.1e+02 Score=31.24 Aligned_cols=42 Identities=7% Similarity=0.001 Sum_probs=28.0
Q ss_pred HHHHHHHHHHh--CCCcEEEEcCCch--hhHHHHHHHHHHhCCcee
Q 040733 260 ALRQTLKLIVE--SKNPVLCVGGGCL--NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 260 ~i~~~~~~L~~--AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~ 301 (643)
.++++.+.+.+ ++|++|+.|.+.. +..+.+.+..+..|+.+.
T Consensus 10 ~~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~ 55 (414)
T cd08190 10 VTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFE 55 (414)
T ss_pred HHHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEE
Confidence 35555555554 4788888888765 345777777777777764
No 492
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=28.63 E-value=62 Score=27.23 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=19.7
Q ss_pred hcCCEEEEecCccCccccCccccccCCceEEEEcCCc
Q 040733 334 NECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDS 370 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~ 370 (643)
.++|++|++|+..+.- ..+ -.+|++.+|+..
T Consensus 39 ~dAeLviV~G~sipnd-----~~l-~GKkv~i~d~~~ 69 (103)
T COG3925 39 NDAELVIVFGSSIPND-----SAL-NGKKVWIGDIER 69 (103)
T ss_pred CcccEEEEeccccCCC-----ccc-cCceEEEecHHH
Confidence 5899999999997521 122 234666666543
No 493
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=28.60 E-value=2.4e+02 Score=29.52 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=52.0
Q ss_pred HHHHHHHHHC-CCCEEEEccCCCcHHHHHHH----hhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 74 DIIVEALERQ-GVTTVFAYPGGASIEIHQSL----TRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 74 ~~lv~~L~~~-GV~~vFg~PG~~~~~l~~al----~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
+.+++.|.+. +.=++||.- .+..+...+ ..-|+..+..-+. .... ...+..+.+-.+++++......+++
T Consensus 37 ~~~~~~l~~a~~~I~i~G~G--~S~~~a~~~~~~l~~~g~~~~~~~~~-~~~~--~~~~~~~~~d~~I~iS~sG~t~~~~ 111 (326)
T PRK10892 37 TLACEKMFWCKGKVVVMGMG--KSGHIGRKMAATFASTGTPSFFVHPG-EAAH--GDLGMVTPQDVVIAISNSGESSEIL 111 (326)
T ss_pred HHHHHHHHhcCCeEEEEeCc--HhHHHHHHHHHHHhcCCceeEEeChH-Hhhc--cccccCCCCCEEEEEeCCCCCHHHH
Confidence 3456666555 344555554 444444333 3445555443221 1111 1123333333344444444667788
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKL 172 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~ 172 (643)
..+..|...++|+|.||+......
T Consensus 112 ~~~~~ak~~g~~vi~iT~~~~s~l 135 (326)
T PRK10892 112 ALIPVLKRLHVPLICITGRPESSM 135 (326)
T ss_pred HHHHHHHHCCCcEEEEECCCCCcc
Confidence 999999999999999999765543
No 494
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=28.58 E-value=3.2e+02 Score=27.86 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=23.5
Q ss_pred CCcEEEEEccchhhHHHHHHHHH---hhhCCCCEEEEeCC
Q 040733 131 GTPGVCLVSSGPGVTNIMTGLMD---AYSDSIPILAITGQ 167 (643)
Q Consensus 131 g~~gv~~~t~GpG~~N~~~gl~~---A~~~~vPvlvItg~ 167 (643)
+...+++.||+-.+.|++..+.+ .+..+.++++|+-.
T Consensus 189 ~~~d~i~ftS~sav~~f~~~l~~~~~~~l~~~~~v~is~r 228 (266)
T PRK08811 189 APRSVLALSSAEALTLILQQLPDALRRALQQRPVVASSDR 228 (266)
T ss_pred CCCCEEEEChHHHHHHHHHHhhhhHHHHHhCCCEEEeCHH
Confidence 45667777777777777665543 34567777776643
No 495
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=28.46 E-value=3e+02 Score=22.86 Aligned_cols=66 Identities=24% Similarity=0.284 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHhCCceeecCC-CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceE
Q 040733 285 SSEELRKFVGLTGIPVTCTTM-GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKI 363 (643)
Q Consensus 285 ~~~~l~~lae~lg~PV~tt~~-gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~i 363 (643)
+.+.|++.+++.|+-+-..-. +.|+- +++ -.+-+.++|+||++|..... ....| ...++
T Consensus 2 AAeaL~~aA~~~G~~i~VEtqg~~g~~---~~l------------t~~~i~~Ad~VIia~d~~i~----~~~rf-~gk~v 61 (88)
T PRK10474 2 AAEALESAAKAKGWEVKVETQGSIGLE---NEL------------TAEDVASADMVILTKDIGIK----FEERF-AGKTI 61 (88)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCcC---CCC------------CHHHHHhCCEEEEEecCCCc----chhcc-CCCce
Confidence 356789999999999864433 33322 112 13457899999999977410 11122 23467
Q ss_pred EEEcCCc
Q 040733 364 VHIDIDS 370 (643)
Q Consensus 364 I~Id~d~ 370 (643)
++++++.
T Consensus 62 ~~~s~~~ 68 (88)
T PRK10474 62 VRVNISD 68 (88)
T ss_pred EEecHHH
Confidence 7665443
No 496
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=28.23 E-value=3.3e+02 Score=26.72 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHh-CCCcEEEEcCCchhhHHHHHHHHHHhCCceeec-CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcC
Q 040733 259 LALRQTLKLIVE-SKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCT-TMGLGLFPCTDELCLRMVGMFGTVYANYAVNEC 336 (643)
Q Consensus 259 ~~i~~~~~~L~~-AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt-~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~a 336 (643)
..+..|++.|.. ..+-++++|... .+.+.+.++|+++|.+.++. |.| |.+ .+.. .......
T Consensus 53 ~~L~~A~~~i~~~~~~~ILfVgTk~-~~~~~v~k~A~~~g~~~v~~RWlg-G~L--------------TN~~-~~~~~~P 115 (204)
T PRK04020 53 ERIRIAAKFLSRYEPEKILVVSSRQ-YGQKPVQKFAEVVGAKAITGRFIP-GTL--------------TNPS-LKGYIEP 115 (204)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHHHHHHHHhCCeeecCccCC-CcC--------------cCcc-hhccCCC
Confidence 456677777765 344566676522 46778999999999987753 222 111 1111 1122489
Q ss_pred CEEEEecCccC
Q 040733 337 DLLLAAGVRFN 347 (643)
Q Consensus 337 DlvL~vG~~~~ 347 (643)
|+|++++..-+
T Consensus 116 dliiv~dp~~~ 126 (204)
T PRK04020 116 DVVVVTDPRGD 126 (204)
T ss_pred CEEEEECCccc
Confidence 99999997754
No 497
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=28.12 E-value=2.2e+02 Score=30.45 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=27.2
Q ss_pred HHHHHHHHHHh-CCCcEEEEcCCch---hhHHHHHHHHHHhCCcee
Q 040733 260 ALRQTLKLIVE-SKNPVLCVGGGCL---NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 260 ~i~~~~~~L~~-AkrPvIl~G~g~~---~~~~~l~~lae~lg~PV~ 301 (643)
.++++-+++.+ .+|++|+.|.+.. +..+.+.+..+..|+.+.
T Consensus 13 ~l~~l~~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~ 58 (357)
T cd08181 13 CVEKHGEELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYE 58 (357)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEE
Confidence 34555555543 4889999888763 344777777777777653
No 498
>PLN03194 putative disease resistance protein; Provisional
Probab=27.98 E-value=2e+02 Score=27.70 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=41.5
Q ss_pred CCCCCCCcccccccCCCCCCcHHHHHHHHHHHCCCCEEEEc----cCCCcH-HHHHHHhhCC
Q 040733 51 STAPFQQTDFSSRFAPDKPRKGADIIVEALERQGVTTVFAY----PGGASI-EIHQSLTRSN 107 (643)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~----PG~~~~-~l~~al~~~~ 107 (643)
++.....+=|+|=-.++...+.+..|.++|.+.|++...-- +|..+. .|..++.++.
T Consensus 21 ~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSr 82 (187)
T PLN03194 21 SSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCK 82 (187)
T ss_pred CCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCe
Confidence 33445567788877677667889999999999999876643 455543 5777887764
No 499
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=27.90 E-value=1.9e+02 Score=31.12 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=27.6
Q ss_pred HHHHHHHHHHh-----CCCcEEEEcCCch---hhHHHHHHHHHHhCCcee
Q 040733 260 ALRQTLKLIVE-----SKNPVLCVGGGCL---NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 260 ~i~~~~~~L~~-----AkrPvIl~G~g~~---~~~~~l~~lae~lg~PV~ 301 (643)
.++++-+.+.+ .||++|+.|.... +..+.+.+..++.|+.+.
T Consensus 10 ~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~ 59 (383)
T cd08186 10 AIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYV 59 (383)
T ss_pred HHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEE
Confidence 34455455543 4789999887654 335777887787787654
No 500
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=27.62 E-value=2.2e+02 Score=30.71 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHh--CCCcEEEEcCCch--hhHHHHHHHHHHhCCcee
Q 040733 259 LALRQTLKLIVE--SKNPVLCVGGGCL--NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 259 ~~i~~~~~~L~~--AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~ 301 (643)
..++++-+.+.+ ++|++|+.|.... +..+.+.+..+..|+.+.
T Consensus 14 g~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~ 60 (377)
T cd08188 14 GALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYV 60 (377)
T ss_pred CHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEE
Confidence 345566555554 4888988887664 346677777777777653
Done!