Query 040733
Match_columns 643
No_of_seqs 261 out of 1616
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 18:10:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ybh_A Acetolactate synthase, 100.0 5E-106 2E-110 913.9 60.7 584 59-643 1-585 (590)
2 1t9b_A Acetolactate synthase, 100.0 2E-101 6E-106 884.4 58.6 555 69-637 81-658 (677)
3 3eya_A Pyruvate dehydrogenase 100.0 1.8E-99 6E-104 853.4 55.0 530 68-622 1-535 (549)
4 2pgn_A Cyclohexane-1,2-dione h 100.0 1.1E-98 4E-103 853.5 55.1 550 69-634 3-564 (589)
5 1ozh_A ALS, acetolactate synth 100.0 3.4E-98 1E-102 845.5 54.3 532 70-626 11-551 (566)
6 4feg_A Pyruvate oxidase; carba 100.0 1.4E-97 5E-102 846.0 57.0 532 67-617 8-547 (603)
7 2pan_A Glyoxylate carboligase; 100.0 1.9E-97 7E-102 847.8 56.3 555 69-635 26-595 (616)
8 2uz1_A Benzaldehyde lyase; thi 100.0 2.8E-97 1E-101 838.3 51.2 537 69-622 3-551 (563)
9 1v5e_A Pyruvate oxidase; oxido 100.0 1.3E-97 4E-102 844.2 48.0 539 69-631 3-574 (590)
10 2iht_A Carboxyethylarginine sy 100.0 1.1E-95 4E-100 826.5 50.0 532 69-616 11-561 (573)
11 1q6z_A BFD, BFDC, benzoylforma 100.0 1.7E-94 5.8E-99 809.9 53.3 521 70-618 2-527 (528)
12 2c31_A Oxalyl-COA decarboxylas 100.0 5.9E-95 2E-99 820.2 46.5 530 67-620 7-551 (568)
13 2q28_A Oxalyl-COA decarboxylas 100.0 1.8E-94 6.1E-99 815.9 46.1 530 69-621 7-549 (564)
14 3lq1_A 2-succinyl-5-enolpyruvy 100.0 8.7E-95 3E-99 819.7 41.8 542 70-626 11-570 (578)
15 2x7j_A 2-succinyl-5-enolpyruvy 100.0 1.8E-94 6.2E-99 821.1 38.2 534 67-620 28-584 (604)
16 2wvg_A PDC, pyruvate decarboxy 100.0 4E-92 1.4E-96 797.0 42.6 524 69-624 2-549 (568)
17 2vbi_A Pyruvate decarboxylase; 100.0 7.8E-92 2.7E-96 794.4 42.5 522 69-624 2-541 (566)
18 3hww_A 2-succinyl-5-enolpyruvy 100.0 1.7E-92 5.8E-97 797.3 31.3 523 69-623 7-546 (556)
19 2vk8_A Pyruvate decarboxylase 100.0 8.1E-92 2.8E-96 794.1 36.3 521 69-621 3-547 (563)
20 1ovm_A Indole-3-pyruvate decar 100.0 1.7E-90 5.8E-95 781.7 43.9 516 69-621 4-537 (552)
21 2nxw_A Phenyl-3-pyruvate decar 100.0 3.2E-90 1.1E-94 780.3 39.6 514 69-620 20-546 (565)
22 2vbf_A Branched-chain alpha-ke 100.0 6E-88 2.1E-92 763.2 45.3 515 69-621 24-556 (570)
23 2c42_A Pyruvate-ferredoxin oxi 99.9 8.6E-22 2.9E-26 236.1 14.8 185 431-618 811-1072(1231)
24 3cf4_G Acetyl-COA decarboxylas 99.8 4.5E-21 1.5E-25 181.6 2.2 135 257-399 20-168 (170)
25 1ytl_A Acetyl-COA decarboxylas 99.7 3.1E-20 1.1E-24 174.9 -7.0 131 261-420 24-171 (174)
26 1yd7_A 2-keto acid:ferredoxin 99.7 9.7E-17 3.3E-21 171.9 8.9 161 69-232 22-191 (395)
27 1w85_A Pyruvate dehydrogenase 99.6 2.9E-16 9.9E-21 166.1 10.5 120 480-618 138-269 (368)
28 1umd_A E1-alpha, 2-OXO acid de 99.6 3.3E-16 1.1E-20 166.1 10.5 116 484-618 144-271 (367)
29 2bfd_A 2-oxoisovalerate dehydr 99.6 4.8E-16 1.6E-20 166.2 9.7 116 482-616 160-287 (400)
30 2o1x_A 1-deoxy-D-xylulose-5-ph 99.6 3.3E-16 1.1E-20 177.9 8.1 138 480-618 119-291 (629)
31 1qs0_A 2-oxoisovalerate dehydr 99.6 1.1E-15 3.7E-20 163.4 9.0 119 482-618 179-309 (407)
32 3l84_A Transketolase; TKT, str 99.6 1.6E-15 5.3E-20 170.8 7.6 119 483-620 113-246 (632)
33 3kom_A Transketolase; rossmann 99.6 3.2E-15 1.1E-19 169.3 9.3 120 482-620 114-253 (663)
34 2ozl_A PDHE1-A type I, pyruvat 99.6 6.9E-15 2.3E-19 155.1 11.1 117 481-618 137-265 (365)
35 2o1s_A 1-deoxy-D-xylulose-5-ph 99.6 1.8E-14 6E-19 163.5 15.2 138 482-620 119-288 (621)
36 3uk1_A Transketolase; structur 99.6 2E-15 6.9E-20 171.6 7.1 119 482-619 153-290 (711)
37 3m49_A Transketolase; alpha-be 99.5 5.8E-15 2E-19 167.5 8.9 120 482-620 138-277 (690)
38 2e6k_A Transketolase; structur 99.5 5.2E-15 1.8E-19 168.2 7.9 119 481-618 115-252 (651)
39 3mos_A Transketolase, TK; thia 99.5 6.9E-15 2.3E-19 165.9 8.5 118 482-619 119-245 (616)
40 2r8o_A Transketolase 1, TK 1; 99.5 7.9E-15 2.7E-19 167.3 8.1 121 481-620 111-251 (669)
41 1itz_A Transketolase; calvin c 99.5 1.3E-14 4.3E-19 165.6 9.2 120 482-620 125-265 (675)
42 1gpu_A Transketolase; transfer 99.5 8.9E-15 3E-19 167.0 7.2 118 482-618 114-252 (680)
43 1r9j_A Transketolase; domains, 99.4 1E-13 3.4E-18 158.0 8.2 118 482-618 114-252 (673)
44 3rim_A Transketolase, TK; TPP, 99.1 6.6E-11 2.3E-15 134.3 10.0 118 482-618 131-271 (700)
45 2yic_A 2-oxoglutarate decarbox 99.1 7.3E-11 2.5E-15 136.7 7.1 119 481-618 242-386 (868)
46 2xt6_A 2-oxoglutarate decarbox 98.9 6.6E-10 2.3E-14 131.9 7.5 118 482-618 488-631 (1113)
47 2jgd_A 2-oxoglutarate dehydrog 98.8 4E-09 1.4E-13 122.9 8.6 117 482-617 319-457 (933)
48 2qtc_A Pyruvate dehydrogenase 98.8 1.3E-08 4.3E-13 118.3 9.5 121 483-620 191-396 (886)
49 2c42_A Pyruvate-ferredoxin oxi 98.1 1.2E-05 4.2E-10 96.8 14.2 153 69-227 6-171 (1231)
50 3ahc_A Phosphoketolase, xylulo 97.4 0.00015 5E-09 83.1 6.7 118 484-618 175-322 (845)
51 1umd_B E1-beta, 2-OXO acid deh 95.7 0.066 2.3E-06 55.1 11.8 116 108-231 51-177 (324)
52 2bfd_B 2-oxoisovalerate dehydr 95.3 0.039 1.3E-06 57.3 8.5 154 69-232 20-195 (342)
53 1qs0_B 2-oxoisovalerate dehydr 95.1 0.1 3.5E-06 54.0 11.2 117 108-232 52-179 (338)
54 1w85_B Pyruvate dehydrogenase 95.0 0.1 3.5E-06 53.7 10.5 116 108-231 50-176 (324)
55 1s5p_A NAD-dependent deacetyla 94.9 0.033 1.1E-06 54.6 6.3 70 328-399 160-231 (235)
56 3mos_A Transketolase, TK; thia 94.8 0.25 8.5E-06 55.4 13.7 155 68-229 311-473 (616)
57 2ozl_B PDHE1-B, pyruvate dehyd 94.6 0.094 3.2E-06 54.3 9.0 112 108-230 62-187 (341)
58 3glr_A NAD-dependent deacetyla 94.6 0.099 3.4E-06 52.5 8.8 69 330-398 192-263 (285)
59 3kom_A Transketolase; rossmann 94.4 0.34 1.2E-05 54.6 13.7 114 108-228 403-521 (663)
60 2o1x_A 1-deoxy-D-xylulose-5-ph 94.3 0.33 1.1E-05 54.6 13.4 149 69-229 321-481 (629)
61 2r8o_A Transketolase 1, TK 1; 94.3 0.26 8.9E-06 55.8 12.6 157 67-229 352-521 (669)
62 1j8f_A SIRT2, sirtuin 2, isofo 94.2 0.077 2.6E-06 54.5 7.2 70 329-398 214-302 (323)
63 1q1a_A HST2 protein; ternary c 93.8 0.075 2.6E-06 53.7 6.2 66 333-398 209-277 (289)
64 1yc5_A NAD-dependent deacetyla 93.8 0.074 2.5E-06 52.4 6.0 69 329-399 174-244 (246)
65 1ma3_A SIR2-AF2, transcription 93.7 0.087 3E-06 52.2 6.3 70 329-400 177-248 (253)
66 2e6k_A Transketolase; structur 93.6 0.46 1.6E-05 53.6 12.8 154 69-229 348-516 (651)
67 2o1s_A 1-deoxy-D-xylulose-5-ph 93.6 0.44 1.5E-05 53.5 12.6 150 69-229 318-479 (621)
68 1m2k_A Silent information regu 93.5 0.099 3.4E-06 51.6 6.4 69 329-399 171-241 (249)
69 1efv_A Electron transfer flavo 93.5 0.17 5.9E-06 51.6 8.3 111 274-399 198-313 (315)
70 3c2q_A Uncharacterized conserv 93.4 0.28 9.5E-06 49.2 9.2 69 330-400 268-340 (345)
71 1ozh_A ALS, acetolactate synth 93.3 0.34 1.1E-05 53.8 11.0 149 437-615 15-170 (566)
72 1ik6_A Pyruvate dehydrogenase; 93.1 0.23 8E-06 51.9 8.8 115 108-231 98-224 (369)
73 1o97_D Electron transferring f 93.1 0.15 5.2E-06 52.2 7.1 112 273-398 202-318 (320)
74 1gpu_A Transketolase; transfer 93.1 0.44 1.5E-05 54.1 11.6 156 67-229 353-529 (680)
75 3k35_A NAD-dependent deacetyla 93.0 0.16 5.5E-06 51.6 7.0 69 329-399 200-270 (318)
76 1r9j_A Transketolase; domains, 92.9 0.68 2.3E-05 52.4 12.9 115 108-229 402-521 (673)
77 3riy_A NAD-dependent deacetyla 92.9 0.13 4.4E-06 51.5 6.2 66 328-395 205-272 (273)
78 2iht_A Carboxyethylarginine sy 92.8 0.41 1.4E-05 53.2 10.8 107 489-616 60-172 (573)
79 2hjh_A NAD-dependent histone d 92.8 0.18 6E-06 52.5 7.3 68 329-399 249-317 (354)
80 3pki_A NAD-dependent deacetyla 92.8 0.16 5.6E-06 52.1 6.8 69 329-399 200-270 (355)
81 1ybh_A Acetolactate synthase, 92.7 0.5 1.7E-05 52.6 11.5 106 489-616 62-173 (590)
82 1t9b_A Acetolactate synthase, 92.7 0.43 1.5E-05 54.1 11.0 151 437-615 86-242 (677)
83 2pan_A Glyoxylate carboligase; 92.7 0.55 1.9E-05 52.6 11.8 118 475-616 66-189 (616)
84 3l84_A Transketolase; TKT, str 92.7 0.45 1.5E-05 53.4 10.8 113 109-229 383-500 (632)
85 2uz1_A Benzaldehyde lyase; thi 92.6 0.6 2.1E-05 51.7 11.8 105 489-615 53-164 (563)
86 1q14_A HST2 protein; histone d 92.5 0.22 7.4E-06 51.8 7.4 67 332-398 216-285 (361)
87 1itz_A Transketolase; calvin c 92.4 0.51 1.7E-05 53.5 11.0 114 108-228 414-533 (675)
88 3eya_A Pyruvate dehydrogenase 91.6 0.64 2.2E-05 51.3 10.4 106 489-616 53-163 (549)
89 1efp_A ETF, protein (electron 91.5 0.37 1.3E-05 49.0 7.6 109 274-397 193-306 (307)
90 2x7j_A 2-succinyl-5-enolpyruvy 91.2 0.55 1.9E-05 52.5 9.5 106 489-616 81-199 (604)
91 1djl_A Transhydrogenase DIII; 91.2 1.7 5.8E-05 40.2 10.8 131 260-400 34-203 (207)
92 1pno_A NAD(P) transhydrogenase 91.0 2.1 7.1E-05 38.7 10.9 129 260-398 12-179 (180)
93 3hww_A 2-succinyl-5-enolpyruvy 90.8 0.42 1.4E-05 52.9 7.9 116 108-229 407-538 (556)
94 4feg_A Pyruvate oxidase; carba 90.7 0.6 2.1E-05 52.2 9.1 118 475-617 51-173 (603)
95 2nxw_A Phenyl-3-pyruvate decar 90.7 1.1 3.8E-05 49.6 11.2 111 489-616 71-187 (565)
96 4iao_A NAD-dependent histone d 90.3 0.49 1.7E-05 50.6 7.4 68 329-399 387-455 (492)
97 2fsv_C NAD(P) transhydrogenase 90.2 1.8 6.3E-05 39.9 10.0 129 260-398 35-202 (203)
98 1v5e_A Pyruvate oxidase; oxido 90.2 1.5 5.1E-05 48.8 11.7 117 475-617 44-166 (590)
99 2q28_A Oxalyl-COA decarboxylas 90.1 1 3.6E-05 49.7 10.4 119 474-615 45-169 (564)
100 3rim_A Transketolase, TK; TPP, 90.0 1.5 5.2E-05 49.6 11.6 155 68-228 373-552 (700)
101 1w85_A Pyruvate dehydrogenase 90.0 0.72 2.5E-05 48.1 8.3 112 117-229 145-266 (368)
102 3m49_A Transketolase; alpha-be 89.8 1.2 4.3E-05 50.3 10.7 114 109-229 428-546 (690)
103 3uk1_A Transketolase; structur 89.5 1.7 5.9E-05 49.3 11.6 113 109-228 449-565 (711)
104 2pgn_A Cyclohexane-1,2-dione h 88.9 1.8 6.1E-05 48.2 11.2 106 489-616 55-166 (589)
105 2bru_C NAD(P) transhydrogenase 88.9 3.8 0.00013 37.1 10.8 79 258-345 17-115 (186)
106 3u31_A SIR2A, transcriptional 88.7 0.42 1.4E-05 48.1 5.2 69 329-399 210-280 (290)
107 2wvg_A PDC, pyruvate decarboxy 88.6 1.9 6.5E-05 47.7 11.1 125 475-617 42-171 (568)
108 2c31_A Oxalyl-COA decarboxylas 88.5 1.7 5.8E-05 48.1 10.6 149 72-229 380-546 (568)
109 1q6z_A BFD, BFDC, benzoylforma 88.5 0.98 3.3E-05 49.5 8.6 119 474-617 38-163 (528)
110 2vbi_A Pyruvate decarboxylase; 88.2 1.6 5.3E-05 48.3 10.0 125 475-617 42-171 (566)
111 2vk8_A Pyruvate decarboxylase 88.1 2.2 7.6E-05 47.0 11.2 114 489-617 54-172 (563)
112 3lq1_A 2-succinyl-5-enolpyruvy 88.1 0.94 3.2E-05 50.3 8.1 105 489-615 61-178 (578)
113 1ovm_A Indole-3-pyruvate decar 87.5 2.2 7.7E-05 46.9 10.7 123 475-616 44-171 (552)
114 1qs0_A 2-oxoisovalerate dehydr 87.2 0.8 2.7E-05 48.4 6.5 110 119-229 186-306 (407)
115 2iv2_X Formate dehydrogenase H 85.2 1.8 6.1E-05 49.4 8.6 136 257-399 80-235 (715)
116 2ozl_A PDHE1-A type I, pyruvat 85.1 1 3.5E-05 46.9 5.9 107 119-229 145-262 (365)
117 1d4o_A NADP(H) transhydrogenas 85.1 1.5 5.1E-05 39.7 6.0 131 260-400 11-180 (184)
118 1yd7_A 2-keto acid:ferredoxin 82.1 1.4 4.8E-05 46.4 5.6 104 489-612 76-185 (395)
119 2vbf_A Branched-chain alpha-ke 82.0 4.1 0.00014 44.9 9.7 123 475-616 64-191 (570)
120 3i9v_3 NADH-quinone oxidoreduc 81.9 2.9 0.0001 48.1 8.6 125 257-395 322-481 (783)
121 2ozl_B PDHE1-B, pyruvate dehyd 79.5 3.5 0.00012 42.4 7.4 113 474-612 61-183 (341)
122 1ik6_A Pyruvate dehydrogenase; 79.4 6.5 0.00022 40.8 9.4 111 474-611 97-218 (369)
123 2bfd_A 2-oxoisovalerate dehydr 78.7 4.7 0.00016 42.4 8.2 109 119-228 167-285 (400)
124 1qs0_B 2-oxoisovalerate dehydr 77.1 5.2 0.00018 41.0 7.8 113 474-612 51-173 (338)
125 2nap_A Protein (periplasmic ni 73.8 1.3 4.5E-05 50.5 2.5 136 257-398 81-236 (723)
126 1umd_A E1-alpha, 2-OXO acid de 72.0 13 0.00044 38.5 9.3 109 119-229 149-268 (367)
127 2ivf_A Ethylbenzene dehydrogen 69.8 2 6.9E-05 50.8 2.8 138 257-399 163-316 (976)
128 1h0h_A Formate dehydrogenase ( 60.5 4.4 0.00015 47.9 3.3 138 257-399 88-254 (977)
129 3rot_A ABC sugar transporter, 58.5 89 0.003 30.2 12.3 153 69-234 112-281 (297)
130 2bfd_B 2-oxoisovalerate dehydr 56.5 20 0.00067 36.7 7.1 112 474-611 66-188 (342)
131 3fxa_A SIS domain protein; str 56.2 20 0.00069 33.1 6.6 46 257-302 30-76 (201)
132 2vpz_A Thiosulfate reductase; 54.6 3.2 0.00011 47.6 0.8 133 257-398 117-268 (765)
133 1umd_B E1-beta, 2-OXO acid deh 53.8 30 0.001 34.9 8.0 111 474-611 50-171 (324)
134 1w85_B Pyruvate dehydrogenase 52.4 21 0.00071 36.1 6.4 111 474-611 49-170 (324)
135 3trj_A Phosphoheptose isomeras 52.1 68 0.0023 29.7 9.6 100 71-170 34-153 (201)
136 1tk9_A Phosphoheptose isomeras 51.1 46 0.0016 30.0 8.2 98 71-168 30-147 (188)
137 1hi9_A Dciaa, dipeptide transp 50.3 2.8 9.7E-05 41.4 -0.5 155 72-228 38-223 (274)
138 2f62_A Nucleoside 2-deoxyribos 49.6 30 0.001 31.2 6.3 115 273-398 10-158 (161)
139 1q16_A Respiratory nitrate red 49.1 20 0.00067 43.3 6.3 139 257-400 163-317 (1247)
140 1hqk_A 6,7-dimethyl-8-ribityll 48.1 18 0.00061 32.4 4.4 70 61-130 19-104 (154)
141 2f62_A Nucleoside 2-deoxyribos 47.5 45 0.0015 30.0 7.1 74 64-139 20-106 (161)
142 2l69_A Rossmann 2X3 fold prote 47.5 32 0.0011 27.6 5.3 46 573-618 17-62 (134)
143 3ahc_A Phosphoketolase, xylulo 46.9 79 0.0027 36.3 10.5 112 109-226 492-622 (845)
144 2e7z_A Acetylene hydratase AHY 46.7 4.3 0.00015 46.3 0.1 132 257-398 80-230 (727)
145 3dma_A Exopolyphosphatase-rela 46.3 80 0.0027 32.1 9.7 113 257-372 7-129 (343)
146 1rvv_A Riboflavin synthase; tr 44.6 21 0.00071 32.0 4.3 70 61-130 19-104 (154)
147 2kyr_A Fructose-like phosphotr 44.0 84 0.0029 26.4 7.7 82 285-398 24-106 (111)
148 2m1z_A LMO0427 protein; homolo 43.9 70 0.0024 26.6 7.2 89 279-399 12-104 (106)
149 2xt6_A 2-oxoglutarate decarbox 43.0 1.2E+02 0.004 36.2 11.6 119 108-232 829-960 (1113)
150 2yic_A 2-oxoglutarate decarbox 42.8 1.3E+02 0.0043 34.8 11.6 119 108-232 584-715 (868)
151 3o74_A Fructose transport syst 42.2 2.2E+02 0.0075 26.6 12.3 88 69-156 104-204 (272)
152 3lou_A Formyltetrahydrofolate 41.8 29 0.00099 34.6 5.4 34 502-538 96-132 (292)
153 2h3h_A Sugar ABC transporter, 41.8 2.5E+02 0.0084 27.1 12.6 86 69-154 105-204 (313)
154 2jgd_A 2-oxoglutarate dehydrog 41.2 1.5E+02 0.0051 34.5 11.9 117 108-232 652-783 (933)
155 1kqf_A FDH-N alpha, formate de 40.6 14 0.00047 43.8 3.2 138 257-399 126-293 (1015)
156 3sho_A Transcriptional regulat 40.3 52 0.0018 29.7 6.6 46 256-302 24-70 (187)
157 3o1l_A Formyltetrahydrofolate 39.5 28 0.00095 34.9 4.8 70 502-607 106-182 (302)
158 3n0v_A Formyltetrahydrofolate 38.8 28 0.00096 34.6 4.7 34 502-538 91-127 (286)
159 1di0_A Lumazine synthase; tran 38.6 26 0.00088 31.5 3.9 70 61-130 17-102 (158)
160 2xbl_A Phosphoheptose isomeras 38.5 1.1E+02 0.0037 27.7 8.6 97 71-169 36-154 (198)
161 3ml1_A NAPA, periplasmic nitra 37.9 14 0.00048 42.6 2.6 66 332-399 175-250 (802)
162 4ds3_A Phosphoribosylglycinami 37.7 25 0.00085 33.2 3.9 33 503-538 9-44 (209)
163 2b99_A Riboflavin synthase; lu 37.6 47 0.0016 29.7 5.4 42 61-105 9-54 (156)
164 3l49_A ABC sugar (ribose) tran 37.5 2.7E+02 0.0092 26.3 13.6 89 69-157 107-216 (291)
165 3gbv_A Putative LACI-family tr 37.1 2.2E+02 0.0076 27.0 11.2 148 69-232 117-287 (304)
166 2xhz_A KDSD, YRBH, arabinose 5 36.8 41 0.0014 30.3 5.3 45 257-302 35-80 (183)
167 1ti6_A Pyrogallol hydroxytrans 35.5 38 0.0013 39.3 5.9 141 257-400 114-285 (875)
168 4fyk_A Deoxyribonucleoside 5'- 35.3 1.3E+02 0.0045 26.6 8.1 81 70-152 18-117 (152)
169 2qtc_A Pyruvate dehydrogenase 35.1 1.9E+02 0.0065 33.5 11.4 114 109-228 563-691 (886)
170 1c2y_A Protein (lumazine synth 34.9 26 0.00088 31.5 3.3 70 61-130 20-104 (156)
171 3etn_A Putative phosphosugar i 34.4 71 0.0024 30.0 6.7 46 257-302 40-90 (220)
172 3tqr_A Phosphoribosylglycinami 33.5 54 0.0019 31.0 5.5 33 503-538 7-41 (215)
173 3gv0_A Transcriptional regulat 33.2 2.4E+02 0.0081 26.8 10.7 87 69-155 111-211 (288)
174 2r48_A Phosphotransferase syst 32.8 87 0.003 26.0 6.0 65 285-370 21-86 (106)
175 1m3s_A Hypothetical protein YC 31.8 1.3E+02 0.0046 26.8 8.0 46 256-302 22-68 (186)
176 1jeo_A MJ1247, hypothetical pr 31.8 1E+02 0.0035 27.4 7.1 45 257-302 26-71 (180)
177 1zxx_A 6-phosphofructokinase; 31.6 28 0.00096 35.2 3.3 38 70-107 79-116 (319)
178 3fro_A GLGA glycogen synthase; 31.4 4.1E+02 0.014 26.6 13.8 122 258-399 267-394 (439)
179 2gk4_A Conserved hypothetical 31.2 42 0.0014 32.2 4.4 78 451-540 4-93 (232)
180 1pfk_A Phosphofructokinase; tr 31.1 26 0.0009 35.4 3.0 41 70-110 80-120 (320)
181 1u7z_A Coenzyme A biosynthesis 30.8 45 0.0015 31.8 4.5 79 451-541 9-97 (226)
182 2yva_A DNAA initiator-associat 30.5 1.3E+02 0.0044 27.2 7.7 99 71-170 29-148 (196)
183 3sho_A Transcriptional regulat 30.4 1.3E+02 0.0044 26.9 7.6 90 72-169 28-125 (187)
184 3ff4_A Uncharacterized protein 29.6 60 0.002 27.6 4.7 41 72-112 70-110 (122)
185 2xzm_B RPS0E; ribosome, transl 29.5 1.5E+02 0.0052 28.4 8.0 73 259-347 51-126 (241)
186 3cs3_A Sugar-binding transcrip 29.3 3.6E+02 0.012 25.3 12.0 86 69-154 102-199 (277)
187 2obx_A DMRL synthase 1, 6,7-di 29.1 35 0.0012 30.6 3.2 70 61-130 18-103 (157)
188 2q5c_A NTRC family transcripti 29.1 1.6E+02 0.0055 27.0 8.0 74 526-605 66-142 (196)
189 3gyb_A Transcriptional regulat 28.4 3.4E+02 0.012 25.4 10.8 88 69-156 102-200 (280)
190 4gnr_A ABC transporter substra 28.2 1.3E+02 0.0043 29.9 7.8 60 257-316 59-118 (353)
191 2ioj_A Hypothetical protein AF 28.0 39 0.0013 29.3 3.3 31 273-305 76-106 (139)
192 3da8_A Probable 5'-phosphoribo 28.0 48 0.0016 31.4 4.1 37 575-611 53-94 (215)
193 1tmo_A TMAO reductase, trimeth 27.9 15 0.00051 42.4 0.7 119 257-375 119-266 (829)
194 2iks_A DNA-binding transcripti 27.7 3.9E+02 0.013 25.2 11.3 91 69-160 122-224 (293)
195 1ejb_A Lumazine synthase; anal 27.1 61 0.0021 29.4 4.4 70 61-130 23-113 (168)
196 2q5c_A NTRC family transcripti 26.8 53 0.0018 30.4 4.2 101 486-603 79-182 (196)
197 2l69_A Rossmann 2X3 fold prote 26.2 89 0.003 25.0 4.6 31 573-603 92-122 (134)
198 4au1_A Precorrin-8X methylmuta 26.2 73 0.0025 30.4 4.9 52 257-308 157-212 (229)
199 1eu1_A Dimethyl sulfoxide redu 26.0 18 0.00062 41.4 0.9 143 258-400 87-257 (780)
200 1vim_A Hypothetical protein AF 25.9 1.9E+02 0.0066 26.3 8.0 45 257-302 33-78 (200)
201 1kz1_A 6,7-dimethyl-8-ribityll 25.8 44 0.0015 30.0 3.2 70 61-130 24-110 (159)
202 1meo_A Phosophoribosylglycinam 25.7 95 0.0032 29.1 5.7 34 503-539 2-38 (209)
203 1jkx_A GART;, phosphoribosylgl 25.5 71 0.0024 30.0 4.8 33 503-538 2-37 (212)
204 3hcw_A Maltose operon transcri 25.3 1.9E+02 0.0064 27.8 8.3 86 69-154 115-214 (295)
205 3dzc_A UDP-N-acetylglucosamine 25.2 2.5E+02 0.0086 28.6 9.6 88 76-166 44-143 (396)
206 4a3s_A 6-phosphofructokinase; 24.9 30 0.001 35.0 2.2 40 71-110 80-119 (319)
207 3iz6_A 40S ribosomal protein S 24.7 3.2E+02 0.011 27.1 9.3 72 259-347 60-134 (305)
208 3u5c_A 40S ribosomal protein S 24.7 1.8E+02 0.0063 28.0 7.5 72 259-347 55-129 (252)
209 2d59_A Hypothetical protein PH 24.5 1.2E+02 0.0042 26.2 5.9 42 71-112 88-129 (144)
210 3td9_A Branched chain amino ac 24.0 1.3E+02 0.0046 29.8 7.1 61 257-317 65-125 (366)
211 2duw_A Putative COA-binding pr 24.0 1.3E+02 0.0044 26.1 6.0 52 59-113 72-123 (145)
212 3bch_A 40S ribosomal protein S 23.9 2.4E+02 0.0083 27.2 8.3 72 259-347 89-163 (253)
213 1x92_A APC5045, phosphoheptose 23.7 1.1E+02 0.0037 27.8 5.8 97 71-169 33-151 (199)
214 3n2b_A Diaminopimelate decarbo 23.4 1.6E+02 0.0055 30.9 7.7 79 510-617 100-178 (441)
215 4f06_A Extracellular ligand-bi 23.2 75 0.0025 32.1 4.9 61 257-317 56-116 (371)
216 3d8u_A PURR transcriptional re 23.2 4.5E+02 0.015 24.3 12.4 86 69-154 104-203 (275)
217 3ksm_A ABC-type sugar transpor 23.1 4.5E+02 0.015 24.3 13.0 87 69-155 107-210 (276)
218 2zxr_A Single-stranded DNA spe 22.9 2E+02 0.0067 32.1 8.4 100 258-370 59-162 (666)
219 2i2w_A Phosphoheptose isomeras 22.8 1.8E+02 0.0063 26.7 7.2 35 135-169 134-169 (212)
220 1ma3_A SIR2-AF2, transcription 22.6 51 0.0017 32.0 3.3 26 258-283 2-27 (253)
221 3nrb_A Formyltetrahydrofolate 22.4 34 0.0012 34.0 2.0 35 502-539 89-126 (287)
222 3vab_A Diaminopimelate decarbo 22.4 1.5E+02 0.005 31.2 7.1 77 510-615 97-173 (443)
223 2i4r_A V-type ATP synthase sub 22.3 78 0.0027 26.1 3.9 39 572-610 18-57 (102)
224 3e7d_A COBH, precorrin-8X meth 21.9 1.3E+02 0.0045 28.2 5.8 52 257-308 140-195 (212)
225 2zkq_b 40S ribosomal protein S 21.9 2.5E+02 0.0086 27.7 8.1 73 259-347 56-130 (295)
226 2bfw_A GLGA glycogen synthase; 21.5 2.6E+02 0.0087 24.7 7.9 106 274-399 72-179 (200)
227 3ot5_A UDP-N-acetylglucosamine 21.0 2E+02 0.0069 29.5 7.8 89 75-166 45-146 (403)
228 1y81_A Conserved hypothetical 20.8 1.4E+02 0.0047 25.7 5.5 42 71-112 80-121 (138)
229 3nbm_A PTS system, lactose-spe 20.7 1.4E+02 0.0048 24.7 5.2 50 273-341 8-59 (108)
230 3p9x_A Phosphoribosylglycinami 20.4 90 0.0031 29.4 4.4 33 503-538 4-39 (211)
231 2r4q_A Phosphotransferase syst 20.4 1.7E+02 0.0059 24.2 5.6 66 284-370 20-86 (106)
No 1
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=100.00 E-value=5.4e-106 Score=913.90 Aligned_cols=584 Identities=68% Similarity=1.148 Sum_probs=514.2
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEE
Q 040733 59 DFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCL 137 (643)
Q Consensus 59 ~~~~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~ 137 (643)
+|+||+..++.|+++++|++.|+++||++|||+||+++++|+++|.+.+ |++|.++||++|+|||+||||+||||+||+
T Consensus 1 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~ 80 (590)
T 1ybh_A 1 TFISRFAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICI 80 (590)
T ss_dssp CCCCSSCTTCCEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEE
T ss_pred CchhcccccCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHHHHCCCEEEE
Confidence 5888888777789999999999999999999999999999999998876 999999999999999999999999999999
Q ss_pred EccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 138 ~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
+|+|||++|+++||++|+.+++|||+||||++....+++++|++||.++++++|||++++.+++++++++++||+.|.++
T Consensus 81 ~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~g~~~~Q~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~ 160 (590)
T 1ybh_A 81 ATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSG 160 (590)
T ss_dssp ECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSS
T ss_pred eccCchHHHHHHHHHHHHhhCCCEEEEeCcCCccccCCCcccccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhC
Q 040733 218 RPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTG 297 (643)
Q Consensus 218 ~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg 297 (643)
|+|||||+||.|++.+++...++....++.+.+...+.++.+.+++++++|.+||||+|++|+|+....+++.+|+|++|
T Consensus 161 ~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~~~l~~lae~~~ 240 (590)
T 1ybh_A 161 RPGPVLVDVPKDIQQQLAIPNWEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTG 240 (590)
T ss_dssp SCCEEEEEEEHHHHHCEECCCTTCCCCCHHHHHHSCCCCCHHHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHC
T ss_pred CCceEEEEeCcchhhhhcccccccccccccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECcccccCHHHHHHHHHHhC
Confidence 99999999999998776532221111111111111122478889999999999999999999999854499999999999
Q ss_pred CceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCC
Q 040733 298 IPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVK 377 (643)
Q Consensus 298 ~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~ 377 (643)
+||++|++|||.+|++||+++|++|..++..++++++++|+||+||++++++.++++..|.+++++||||+|+.++++++
T Consensus 241 ~Pv~~t~~g~g~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 320 (590)
T 1ybh_A 241 IPVASTLMGLGSYPADDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNK 320 (590)
T ss_dssp CCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCHHHHSSGGGTTTTSEEEEEESCTTTTTSSS
T ss_pred CCEEEchhhcCcCCCCCchhcCCcccccCHHHHHHHHhCCEEEEEcCCCCccccCcccccCCCCeEEEEECCHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999888887777877889999999999999999
Q ss_pred CCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeC
Q 040733 378 LPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTG 457 (643)
Q Consensus 378 ~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d 457 (643)
+.++.|++|++.+|++|.+.+.............|.+++.+.++++........+.+++..+++.|++.+++ +.+|++|
T Consensus 321 ~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~lp~-~~ivv~d 399 (590)
T 1ybh_A 321 TPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLDELTDG-KAIISTG 399 (590)
T ss_dssp CCSEEEESCHHHHHHHHHHHHHHTHHHHCCCCHHHHHHHHHHHHHSCCCCCCCTTBCCHHHHHHHHHHHTTT-CCEEEEC
T ss_pred CCCeEEecCHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhhhhhcccccCCcCHHHHHHHHHHhCCC-CCEEEEc
Confidence 999999999999999998877642100001235788887776665543222223569999999999999998 9999999
Q ss_pred CChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEe
Q 040733 458 VGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLIN 537 (643)
Q Consensus 458 ~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~N 537 (643)
+|++.+|+.++++.+++++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+|
T Consensus 400 ~G~~~~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~ivv~N 479 (590)
T 1ybh_A 400 VGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLN 479 (590)
T ss_dssp SSHHHHHHHHSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHTTTHHHHHHHTTCCEEEEEEE
T ss_pred CcHHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCC
Q 040733 538 NQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 538 N~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~ 617 (643)
|++|+|++++|...|+.+...+.++.|.......+||.++|++||+++++|++.+||+++|+++++.+||+||||.+++.
T Consensus 480 N~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~~ 559 (590)
T 1ybh_A 480 NQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTMLDTPGPYLLDVICPHQ 559 (590)
T ss_dssp CSBCHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEECBHHHHHHHHHHHHHSSSCEEEEEECCTT
T ss_pred CCcchHHHHHHHHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 99999999999887765554443333211111357999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCcccccccccCCCCCCC
Q 040733 618 EHVVPMIPYDKSFKDTILEDDGRALH 643 (643)
Q Consensus 618 ~~~~p~~~~~~~~~~~~~~~~~~~~~ 643 (643)
++..|+++++..++++..+++||-.|
T Consensus 560 ~~~~p~~~~~~~~~~~~~~~~~~~~~ 585 (590)
T 1ybh_A 560 EHVLPMIPSGGTFNDVITEGDGRLEH 585 (590)
T ss_dssp CCCCSBCCTTCCGGGCBCSCCCC---
T ss_pred cccCCcCCCCCchHhhccCCcccccc
Confidence 99999999998899999999999765
No 2
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=100.00 E-value=1.7e-101 Score=884.38 Aligned_cols=555 Identities=41% Similarity=0.682 Sum_probs=490.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++++|++.|+++||++|||+||+.+++|+++|.+.+ |++|.+|||++|+|||+||||+||||+||++|+|||++|+
T Consensus 81 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~ 160 (677)
T 1t9b_A 81 GLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNV 160 (677)
T ss_dssp TCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHH
Confidence 579999999999999999999999999999999998766 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++|+.+++|||+||||+++..+++++||++||..+++++|||++++.+++++++.+++||+.|+++|+|||||+||
T Consensus 161 ~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 161 VTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCChhhcCCCCccccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCC---CCC--CCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch---hhHHHHHHHHHHhCCc
Q 040733 228 VDVQLELAVPNWNQPCKLPSC---ISS--LPKEPDELALRQTLKLIVESKNPVLCVGGGCL---NSSEELRKFVGLTGIP 299 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~---~~~--~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~---~~~~~l~~lae~lg~P 299 (643)
.|++.+++..........+.. ... ....+..+.+++++++|.+||||+|++|+|+. .+.+++.+|||++|+|
T Consensus 241 ~Dv~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvIl~G~g~~~~~~~~~~l~~lae~~~~P 320 (677)
T 1t9b_A 241 KDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIP 320 (677)
T ss_dssp HHHHHSBCCSCBC--------------------CHHHHHHHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCC
T ss_pred HHHhhhhcccccccccccccccccCCCccccccCCHHHHHHHHHHHHhCCCeEEEECcccccCchhHHHHHHHHHHhCCC
Confidence 999877553111100011111 000 00112357899999999999999999999986 3568899999999999
Q ss_pred eeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCce---------EEEEcCCc
Q 040733 300 VTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAK---------IVHIDIDS 370 (643)
Q Consensus 300 V~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~---------iI~Id~d~ 370 (643)
|++|++|||.||++||+++|++|.++...++++++++|+||+||++++++.++.+..|.++++ +||||+|+
T Consensus 321 V~tt~~gkg~~~~~hpl~lG~~G~~g~~~~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~ 400 (677)
T 1t9b_A 321 VTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSP 400 (677)
T ss_dssp EEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCG
T ss_pred eeeccccCccCCCCCccccCcCCccCcHHHHHHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCH
Confidence 999999999999999999999999999999999999999999999999988887777766666 99999999
Q ss_pred ccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccc--CCCCCCCHHHHHHHHHhcC-
Q 040733 371 NEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYK--TFGEEIPPQYAIQILNELT- 447 (643)
Q Consensus 371 ~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~L~~~l- 447 (643)
.+++++++.++.|++|++.+|++|++.+... .....|.+++.+.+++++..+. .....+++..+++.|++.+
T Consensus 401 ~~~~~~~~~~~~i~gD~~~~l~~L~~~l~~~-----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~l~ 475 (677)
T 1t9b_A 401 KNINKVVQTQIAVEGDATTNLGKMMSKIFPV-----KERSEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLSKVAN 475 (677)
T ss_dssp GGSSSSSCCSEEEESCHHHHHHHHHTTSCCC-----CCCHHHHHHHHHHHHHSCCCCCCCCTTCCBCHHHHHHHHHHHHH
T ss_pred HHhCCcccCCEEEeCCHHHHHHHHHHHhhcc-----ccchHHHHHHHHHHHhcccccccccCCCCcCHHHHHHHHHHHhh
Confidence 9999999999999999999999998766431 1235788888777766542211 1235699999999999998
Q ss_pred --CCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHH
Q 040733 448 --DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIK 525 (643)
Q Consensus 448 --~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~ 525 (643)
++ +.|+++|+|++.+|..++++.+++++|++++++|+||+++|+|+|+++|.|+++||+|+|||+|+|+++||+|++
T Consensus 476 ~~~~-~~iv~~~vg~~~~~~~~~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~GDGsf~~~~~eL~ta~ 554 (677)
T 1t9b_A 476 DTGR-HVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAV 554 (677)
T ss_dssp TTCS-CEEEEECSSHHHHHHHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHH
T ss_pred cCCC-CEEEEeCCchHHHHHHHhcccCCCCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEeehHHhccHHHHHHHH
Confidence 56 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCC
Q 040733 526 AENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETP 605 (643)
Q Consensus 526 ~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~ 605 (643)
++++|++|||+||++|+|++++|...|..++.++. ...+||.++|++||+++++|++.+||+++|+++++.+
T Consensus 555 ~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~--------~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~ 626 (677)
T 1t9b_A 555 QAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTH--------QLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTK 626 (677)
T ss_dssp HHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCC--------CCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHCS
T ss_pred HhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCc--------CCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999887765543321 2468999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCCCCcccccCCCcccccccccC
Q 040733 606 GPYLLDVMVSYQEHVVPMIPYDKSFKDTILED 637 (643)
Q Consensus 606 gp~lIeV~v~~~~~~~p~~~~~~~~~~~~~~~ 637 (643)
||+||||.++++++..||++.+..+.+++...
T Consensus 627 gp~lIev~~~~~~~~~p~~~~~~~~~~~~~~~ 658 (677)
T 1t9b_A 627 GPVLLEVEVDKKVPVLPMVAGGSGLDEFINFD 658 (677)
T ss_dssp SCEEEEEEBCSSCCCSSBCCTTCCTTSCBCCC
T ss_pred CcEEEEEEecCCcccCCcCCCCCchhhhhcCc
Confidence 99999999999999999998887777766443
No 3
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=100.00 E-value=1.8e-99 Score=853.39 Aligned_cols=530 Identities=28% Similarity=0.410 Sum_probs=459.8
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
|.++++|+|++.|+++||++|||+||+++++|+++|.+++ |++|.+|||++|+|||+||||+||||+||++|+|||++|
T Consensus 1 m~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N 80 (549)
T 3eya_A 1 MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLH 80 (549)
T ss_dssp CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CCccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhh
Confidence 4679999999999999999999999999999999999875 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.+++|||+||||+|....+++++|++||.++++++|||++++.+++++++.+++||+.|.++ +|||||+|
T Consensus 81 ~~~gi~~A~~~~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~i 159 (549)
T 3eya_A 81 LINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLN-RGVSVVVL 159 (549)
T ss_dssp THHHHHHHHHTTCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHT-TSEEEEEE
T ss_pred hHHHHHHHHhhCCCEEEEeCCCchhhcCCCCCCccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhC-CCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 59999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|.|++.+++....... ..+... ....++++.+++++++|.+||||+|++|+|+.++.+++++|+|++|+||++|++|
T Consensus 160 P~dv~~~~~~~~~~~~-~~~~~~--~~~~~~~~~i~~~~~~l~~A~rpvIl~G~g~~~a~~~l~~lae~~~~Pv~~t~~g 236 (549)
T 3eya_A 160 PGDVALKPAPEGATMH-WYHAPQ--PVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHALRG 236 (549)
T ss_dssp EHHHHTSBCCTTCCCC-CCCCCC--CEEECCHHHHHHHHHHHHTCCSEEEEECGGGTTCHHHHHHHHHHHTCCEEECGGG
T ss_pred ChhHhhcccCcccccc-ccccCC--CCCCCCHHHHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhCCCEEECCcc
Confidence 9999987763221100 011001 0122578899999999999999999999998888899999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
||.+|++||+++|++|..++..++++++++|+||+||++++.. ..+.+++++||||+|+.+++++++.++.+++|
T Consensus 237 kg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~iG~~~~~~-----~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d 311 (549)
T 3eya_A 237 KEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYR-----AFYPTDAKIIQIDINPASIGAHSKVDMALVGD 311 (549)
T ss_dssp HHHHSSSCTTBCCCCSTTSCHHHHHHHHHCSEEEEESCCCCCG-----GGSCSSSEEEEEESCGGGTTSSSCCSEEEECC
T ss_pred CcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCCcc-----ccCCCCCeEEEEeCCHHHhCCCCCCCeEEEeC
Confidence 9999999999999999999999999999999999999998532 12345689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCC----CcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 387 AKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP----FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 387 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++.+|++|.+.+.... ...|.+++.+.++++. ........++++..+++.|++.+++ +.+|+.|+|++.
T Consensus 312 ~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ivv~d~G~~~ 384 (549)
T 3eya_A 312 IKSTLRALLPLVEEKA------DRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAAD-DAIFTCDVGTPT 384 (549)
T ss_dssp HHHHHHHHGGGSCCCC------CCHHHHHHHHHHHHHHHHHHHTSCCCSSCBCHHHHHHHHHHHSCT-TCEEEECTTHHH
T ss_pred HHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHhhCCC-CCEEEEcCcHHH
Confidence 9999999987665321 1245554433222111 0011124579999999999999999 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
+|..+++..+.+++++.++++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+||++||
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~ivv~nN~~~g 464 (549)
T 3eya_A 385 VWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLG 464 (549)
T ss_dssp HHHHHHCCCCSSCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHHTTCCCEEEEEECSBCC
T ss_pred HHHHHhCccCCCCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCccc
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVP 622 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p 622 (643)
|++.+|....... ... ....+||.++|++||+++++|++++||+++|+++++.+||+||||+++++++..|
T Consensus 465 ~~~~~~~~~~~~~-~~~--------~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~~~~~~p 535 (549)
T 3eya_A 465 FVAMEMKAGGYLT-DGT--------ELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIP 535 (549)
T ss_dssp CC-------------CC--------BCCCCCHHHHHHHTTSEEEEECSGGGHHHHHHHHHHSSSCEEEEEEBCCCCSCCC
T ss_pred HHHHHHHhcCCCC-cCC--------cCCCCCHHHHHHHcCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeccccccCC
Confidence 9987665321111 111 2356899999999999999999999999999999999999999999999988765
No 4
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=100.00 E-value=1.1e-98 Score=853.46 Aligned_cols=550 Identities=26% Similarity=0.370 Sum_probs=481.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-C-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-N-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
.|+++++|++.|+++||++|||+||+++++|+++|.+. + |++|.+|||++|+|||+||||+||||+||++|+|||++|
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N 82 (589)
T 2pgn_A 3 IKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLL 82 (589)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGG
T ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchHHH
Confidence 47999999999999999999999999999999999886 5 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCC-CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTD-AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~-~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
+++||++|+.+++|||+||||++...++++ ++|++||.. ++++|||++++.+++++++.+++||+.|.++|+|||||+
T Consensus 83 ~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 161 (589)
T 2pgn_A 83 LHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVD 161 (589)
T ss_dssp CHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCCCCcccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEEE
Confidence 999999999999999999999999999999 999999999 999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 226 IPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 226 iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
||.|++.+++......+.... .....+..++ +.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|
T Consensus 162 iP~dv~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t 239 (589)
T 2pgn_A 162 IPFDLTADQIDDKALVPRGAT-RAKSVLHAPN-EDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEMVGVPVVTT 239 (589)
T ss_dssp EETHHHHCEEECTTTSCCCCC-CCCCCCCCCH-HHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEC
T ss_pred eCHhhhhcccccccccccccc-cCCccCCChH-HHHHHHHHHHHhCCCeEEEECCCcccccHHHHHHHHHHHhCCCEEEc
Confidence 999998765431100000000 1111001234 7899999999999999999999986 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
++|||.+|++||+++|++|..++..++++++++|+||+||+++.++.++ +..|.+++++||||+|+.+++++++.++.|
T Consensus 240 ~~~~g~~~~~~p~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~-~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 318 (589)
T 2pgn_A 240 STGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSDWGIA-QGYITKMPKFVHVDTDPAVLGTFYFPLLSV 318 (589)
T ss_dssp TTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTTTT-TTTTCCCCSEEEEESCGGGTTSSSCCSEEE
T ss_pred cccCccCCCCChhhcCCccccCCHHHHHHHhhCCEEEEECCCccccccc-ccccCCCCeEEEEeCCHHHHCCCcCCCEEE
Confidence 9999999999999999999999988999999999999999999888777 766767889999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCC---CCChhHHH--HHHHH-HHHhCC-CcccCCCCCCCHHHHHHHHHhcCCCCCeEEEe
Q 040733 384 CADAKLVFNRMNMILESKGVGF---MFDFSAWR--EELHE-QKKKYP-FSYKTFGEEIPPQYAIQILNELTDDEETIIST 456 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~---~~~~~~w~--~~~~~-~~~~~~-~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~ 456 (643)
++|++.+|++|.+.+....... ......|. +++.+ .++ +. ........++++..+++.|++.+++ +.+++.
T Consensus 319 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~l~~~l~~-~~iv~~ 396 (589)
T 2pgn_A 319 VADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDG-WVREQESGDGMPASMFRAMAEVRKVQRP-EDIIVT 396 (589)
T ss_dssp ECCHHHHHHHHHHHGGGSTTCCCCCGGGSTTHHHHHHHHHHHHH-HHHHHTCCCCSSCCHHHHHHHHHHTCCT-TCEEEE
T ss_pred EeCHHHHHHHHHHHhhhcccccccccccchhhccHHHHHHHHHH-HHhhhccCCCCCcCHHHHHHHHHHhCCC-CCEEEE
Confidence 9999999999988775321000 01123576 55544 332 11 0000123569999999999999998 999999
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++.+|..++++.+++++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 397 d~g~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~ 476 (589)
T 2pgn_A 397 DIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVEHKLPVITMVF 476 (589)
T ss_dssp CSSTTHHHHHHHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEE
T ss_pred cCchHHHHHHHhcccCCCCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHHHHhhHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 537 NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
||++|+|++++|...|+.++. +. ...+||.++|++||+++++|++.+||+++|+++++.+||+||||++++
T Consensus 477 nN~~~~~~~~~~~~~~~~~~~-~~--------~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~ 547 (589)
T 2pgn_A 477 TNESYGANWTLMNHQFGQNNW-TE--------FMNPDWVGIAKAFGAYGESVRETGDIAGALQRAIDSGKPALIEIPVSK 547 (589)
T ss_dssp ECSBCHHHHHHHHHHHSSCCS-CB--------CCCCCHHHHHHHHTCEEEECTTTCCHHHHHHHHHHHCSCEEEEEECCS
T ss_pred ECCCcccchHHHHhhcCCCcc-cc--------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 999999999999887765433 22 236899999999999999999999999999999988999999999999
Q ss_pred CCCcccccCCCccccccc
Q 040733 617 QEHVVPMIPYDKSFKDTI 634 (643)
Q Consensus 617 ~~~~~p~~~~~~~~~~~~ 634 (643)
.++..|+ +.+....++.
T Consensus 548 ~~~~~~~-~~g~~~~~~~ 564 (589)
T 2pgn_A 548 TQGLASD-PVGGVGPNLL 564 (589)
T ss_dssp SSSTTTC-CSSCCCCCCS
T ss_pred CCCcCcc-CCCcchHhhc
Confidence 9988876 8887777765
No 5
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=100.00 E-value=3.4e-98 Score=845.54 Aligned_cols=532 Identities=25% Similarity=0.387 Sum_probs=463.6
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
|+++++|++.|+++||++|||+||+++++|+++|.+.+|++|.++||++|+|||+||||+||||+||++|+|||++|+++
T Consensus 11 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~ 90 (566)
T 1ozh_A 11 AHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLIT 90 (566)
T ss_dssp SCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGGSSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHH
T ss_pred CcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHH
Confidence 78999999999999999999999999999999998845999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
||++|+.+++|||+||||++...++++++|++||..+++++|||++++.+++++++.+++||+.|.++|+|||||+||.|
T Consensus 91 ~l~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 91 GMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhcCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCC
Q 040733 230 VQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGL 307 (643)
Q Consensus 230 v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gk 307 (643)
++.+++...... .+... . .+.++.+.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|++||
T Consensus 171 v~~~~~~~~~~~---~~~~~-~-~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~k 245 (566)
T 1ozh_A 171 VVDGPVSGKVLP---ASGAP-Q-MGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAA 245 (566)
T ss_dssp HHHSCEEECCCC---CCCSC-E-ECCSCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGGGT
T ss_pred hhhccccccccc---ccccc-C-CCCCCHHHHHHHHHHHHcCCCeEEEECCCcccccHHHHHHHHHHHHCCCEEEccccC
Confidence 987765321110 01111 1 1235778899999999999999999999986 678999999999999999999999
Q ss_pred CCCCCCCC-CcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcccccc-CCceEEEEcCCcccccCCCCCCeeEec
Q 040733 308 GLFPCTDE-LCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA-TRAKIVHIDIDSNEIGKVKLPDVSICA 385 (643)
Q Consensus 308 g~~~~~hp-l~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~-~~~~iI~Id~d~~~i~~~~~~~~~i~~ 385 (643)
|.+|++|| +++|++|..++..++++++++|+||+||+.+ .++....|. +++++||||+|+.+++++++.++.|++
T Consensus 246 g~~~~~~p~~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~---~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 322 (566)
T 1ozh_A 246 GAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSP---VEYEPAMWNSGNATLVHIDVLPAYEERNYTPDVELVG 322 (566)
T ss_dssp TTCCTTTCTTEEEECSSBTTCHHHHHHHHCSEEEEESCCG---GGSCGGGTCCSCSEEEEEESSCCCCBTTBCCSEEEES
T ss_pred CcCCCCChHhhcCCCcccCCHHHHHHHHhCCEEEEECCCC---CcCCccccCCCCCcEEEEeCCHHHhCCCCCCCEEEEe
Confidence 99999999 9999999999888899999999999999964 333333443 367999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC----cccCCCCC-CCHHHHHHHHHhcCCCCCeEEEeCCCh
Q 040733 386 DAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF----SYKTFGEE-IPPQYAIQILNELTDDEETIISTGVGQ 460 (643)
Q Consensus 386 D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~-i~~~~~~~~L~~~l~~~d~iv~~d~G~ 460 (643)
|++.+|++|.+.+.... ....|.+++.+.++++.. .......+ +++..+++.|++.+++ +.+|+.|+|+
T Consensus 323 d~~~~l~~L~~~l~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~-~~iv~~d~G~ 396 (566)
T 1ozh_A 323 DIAGTLNKLAQNIDHRL-----VLSPQAAEILRDRQHQRELLDRRGAQLNQFALHPLRIVRAMQDIVNS-DVTLTVDMGS 396 (566)
T ss_dssp CHHHHHHHHHHTCCSCC-----CCCHHHHHHHHHHHHHHHHHHC-CCCCCCSSBCHHHHHHHHHHHCCT-TEEEEECSSH
T ss_pred CHHHHHHHHHHhccccC-----CcHHHHHHHHHHHHHhHhhhhhccccCCCCCcCHHHHHHHHHHhCCC-CCEEEEcCcH
Confidence 99999999987654311 123576666544432210 00112345 9999999999999998 9999999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+.+|..++++..+++++++++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+||++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~nN~~ 476 (566)
T 1ozh_A 397 FHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNG 476 (566)
T ss_dssp HHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHHHHHHTTHHHHHHHHTCCEEEEEEECSB
T ss_pred HHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEEcChHHhccHHHHHHHHHhCCCcEEEEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
|+|++++|...|+..+. + ....+||.++|++||+++++|++.+||+++|+++++.+||+||||.++++++
T Consensus 477 ~~~~~~~~~~~~~~~~~-~--------~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~~~~- 546 (566)
T 1ozh_A 477 YNMVAIQEEKKYQRLSG-V--------EFGPMDFKAYAESFGAKGFAVESAEALEPTLRAAMDVDGPAVVAIPVDYRDN- 546 (566)
T ss_dssp CHHHHHHHHHHHSSCCS-C--------BCCCCCHHHHHHTTTSEEEECCSGGGHHHHHHHHHHSSSCEEEEEEBCCTTH-
T ss_pred hhHHHHHHHHhcCCCcc-C--------cCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCcC-
Confidence 99999998887754432 1 1345899999999999999999999999999999999999999999999886
Q ss_pred ccccCC
Q 040733 621 VPMIPY 626 (643)
Q Consensus 621 ~p~~~~ 626 (643)
|++|.
T Consensus 547 -p~~~~ 551 (566)
T 1ozh_A 547 -PLLMG 551 (566)
T ss_dssp -HHHHT
T ss_pred -CCccc
Confidence 77763
No 6
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=100.00 E-value=1.4e-97 Score=845.99 Aligned_cols=532 Identities=24% Similarity=0.352 Sum_probs=465.1
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC--CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS--NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
.+.|+++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||||+||||+||++|+|||+
T Consensus 8 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~ 87 (603)
T 4feg_A 8 QTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGG 87 (603)
T ss_dssp -CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHH
T ss_pred cCeeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCCchH
Confidence 3468999999999999999999999999999999999885 49999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEE
Q 040733 145 TNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLI 224 (643)
Q Consensus 145 ~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i 224 (643)
+|+++||++|+.+++|||+||||+++..++++++|++||.++|+++|||++++.+++++++.+++||+.|.+ ++|||||
T Consensus 88 ~N~~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l 166 (603)
T 4feg_A 88 THLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVV 166 (603)
T ss_dssp HTTHHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcccccCCCccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 5799999
Q ss_pred EcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecC
Q 040733 225 DIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 225 ~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~ 304 (643)
+||.|++.+++....... .........++.++++.+++++++|++||||+|++|+|+.++.+++.+|+|++|+||++|+
T Consensus 167 ~iP~dv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~~~a~~~l~~lae~~~~PV~~t~ 245 (603)
T 4feg_A 167 QIPVDLPWQQIPAEDWYA-SANSYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTY 245 (603)
T ss_dssp EEETTGGGSEEETTTCCC-CGGGCCCCCCCBCCHHHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECG
T ss_pred EeChhhhhccCCcccccc-cccccCCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCCchhHHHHHHHHHHHHCCCEEEcC
Confidence 999999988764321000 0000000112346888999999999999999999999998888999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+|||.||++||+++|++|..++..++++++++|+||+||++++. +..+..|.+++++||||+|+.+++++++.++.|+
T Consensus 246 ~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~--~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~ 323 (603)
T 4feg_A 246 PAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPF--AEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVL 323 (603)
T ss_dssp GGTTSSCTTCTTBCCCCSSSSCHHHHHHHHHCSEEEEESCCCTT--TTTTTTTTTCSEEEEEESCGGGTTSSSCCSEEEE
T ss_pred ccccCCCCCChhhcccCcccCcHHHHHHHHhCCEEEEECCCCCc--ccccccCCCCCeEEEEeCCHHHhCCccCCCEEEE
Confidence 99999999999999999999999999999999999999999873 2222345667899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC----cccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCCh
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF----SYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQ 460 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~ 460 (643)
+|++.+|++|++.+.... ...|.+.+.+.++++.. .......++++.++++.|++.+++ +.+|+.|+|+
T Consensus 324 ~D~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-~~ivv~d~G~ 396 (603)
T 4feg_A 324 ADAQKTLAAILAQVSERE------STPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEP-DAIYSIDVGD 396 (603)
T ss_dssp SCHHHHHHHHHHTCCCCC------CCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHCCT-TCEEEECSSH
T ss_pred eCHHHHHHHHHHhhhccC------ChHHHHHHHHHHHHHHHHhhhhhcCCCCCcCHHHHHHHHHHhCCC-CCEEEECCch
Confidence 999999999987765321 12455443322211110 011234679999999999999999 9999999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+.+|..+++..+.+++|+.++++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|+.++++|+++||+||++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~~l~~a~~~~lp~~~vv~nN~~ 476 (603)
T 4feg_A 397 INLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQ 476 (603)
T ss_dssp HHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSB
T ss_pred HHHHHHHhceeCCCCceecCcccccccchhHHHhhHHHhCCCCcEEEEeccHHHhhhHHHHHHHHHHCcCeEEEEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH--hCCCcEEEEEEeCCC
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML--ETPGPYLLDVMVSYQ 617 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al--~~~gp~lIeV~v~~~ 617 (643)
|+|++..|...+..+...+ ....+||.++|++||+++++|++.+||+++|++++ +.+||+||||+++++
T Consensus 477 ~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~~gP~lIev~~~~~ 547 (603)
T 4feg_A 477 YGFIKDEQEDTNQNDFIGV--------EFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGD 547 (603)
T ss_dssp CHHHHHHHHHHCSSCCCSS--------BCCCCCHHHHHHHTTCEEEEECBGGGHHHHHHHHHHHTTTSCEEEEEECCCC
T ss_pred hHHHHHHHHHhcCCCcccC--------cCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHHhcCCCcEEEEEEeCCC
Confidence 9999988876543212222 13568999999999999999999999999999999 889999999999764
No 7
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=100.00 E-value=1.9e-97 Score=847.81 Aligned_cols=555 Identities=30% Similarity=0.468 Sum_probs=479.8
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N 146 (643)
.++++|+|++.|+++||++|||+||+++++|+++|.+.+ |++|.++||++|+|||+||||+| |+++||++|+|||++|
T Consensus 26 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N 105 (616)
T 2pan_A 26 KMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTD 105 (616)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHT
T ss_pred cCcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHH
Confidence 369999999999999999999999999999999998765 99999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.+++|||+||||+|....+++++|++||.++++++|||++++.+++++++++++||+.|+++|+|||||+|
T Consensus 106 ~~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~i 185 (616)
T 2pan_A 106 MITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDL 185 (616)
T ss_dssp SHHHHHHHHHTTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++..+....+.....++.+. +.+..+.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|+
T Consensus 186 P~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~PV~~t~ 261 (616)
T 2pan_A 186 PFDVQVAEIEFDPDMYEPLPVYK----PAASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTL 261 (616)
T ss_dssp EHHHHHSEEECCGGGCCCCCCCC----CCCCHHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECT
T ss_pred chhhhhcccccccccccccccCC----CCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHhCCCEEEcc
Confidence 99998764321111111122211 123578899999999999999999999986 678999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcH-HHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTV-YANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~-~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
+|||.+|++||+++|++|..++. .++++++++|+||+||++++++.++.+..|.++.++||||+|+.+++++++.++.+
T Consensus 262 ~~~g~~~~~hp~~~G~~g~~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 341 (616)
T 2pan_A 262 MGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGI 341 (616)
T ss_dssp TTTTSSCTTSTTBCCCCSSSSCCHHHHHHHHHCSEEEEESCCCCHHHHSSHHHHHTTCEEEEEESCGGGTTSSSCCSSCE
T ss_pred ccCccCCCCCccccCCccccCCHHHHHHHHHhCCEEEEECCCCcccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEE
Confidence 99999999999999999988887 88999999999999999998877777666777889999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccc-CCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYK-TFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++|++.+|++|.+.+.............|.+++.+.+.+.+.... ....++++..+++.|++.+++ +.++++|+|++.
T Consensus 342 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-~~ivv~d~G~~~ 420 (616)
T 2pan_A 342 VSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGR-DVCYVTTIGLSQ 420 (616)
T ss_dssp ECCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTTSEECCCCCCSSBCHHHHHHHHHHHSCT-TEEEEECSSHHH
T ss_pred EcCHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhhhhhccccCCCCcCHHHHHHHHHHhCCC-CcEEEEcCcHHH
Confidence 999999999998876531100011234677766655554432211 123569999999999999998 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
+|+.++++.+++++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|++|||+||++|+
T Consensus 421 ~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~ivv~NN~~~~ 500 (616)
T 2pan_A 421 IAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHVLVNNAYLG 500 (616)
T ss_dssp HHHHHHCCCCSTTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEEEEHHHHHHTGGGHHHHHHTTCCCEEEEEECSBCH
T ss_pred HHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhCCHHHHHHHHHhCCCeEEEEEECCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcc-----cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEEEEE
Q 040733 543 MNVEYEDRYFEA-----NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLLDVM 613 (643)
Q Consensus 543 ~~~~~q~~~~~~-----~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lIeV~ 613 (643)
|++++|...|+. .+..... .+ .....+||.++|++||+++++|++++||+++|+++++ .+||+||||.
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lIev~ 577 (616)
T 2pan_A 501 LIRQSQRAFDMDYCVQLAFENINS-SE--VNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVI 577 (616)
T ss_dssp HHHHHGGGGTCCCSCBCCCCCTTC-GG--GTTCCCCHHHHHHHTTCEEEEECSGGGHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred HHHHHHHHhcCCcccccccccccc-cc--CCCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEE
Confidence 999988776653 1111111 00 0012479999999999999999999999999999998 8999999999
Q ss_pred eCCCCCcccccCCCcccccccc
Q 040733 614 VSYQEHVVPMIPYDKSFKDTIL 635 (643)
Q Consensus 614 v~~~~~~~p~~~~~~~~~~~~~ 635 (643)
+++.+. ++.+..++++..
T Consensus 578 ~~~~~~----~~~~~~~~~~~~ 595 (616)
T 2pan_A 578 LERVTN----ISMGSELDNVME 595 (616)
T ss_dssp BCSCCC----CCBCSSGGGCBC
T ss_pred eccccc----CCCCcchHHhhh
Confidence 998773 344555555543
No 8
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=100.00 E-value=2.8e-97 Score=838.28 Aligned_cols=537 Identities=25% Similarity=0.369 Sum_probs=469.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
.|+++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||||+||||+||++|+|||++|++
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~ 82 (563)
T 2uz1_A 3 MITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNAV 82 (563)
T ss_dssp EEEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHHTCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTTH
T ss_pred ccCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhcCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHHH
Confidence 47999999999999999999999999999999999876799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCc-cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQE-IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
+||++|+.+++|||+||||++...++++++|+ +||.++++++|||++++.+++++++.+++||+.|.++|+|||||+||
T Consensus 83 ~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP 162 (563)
T 2uz1_A 83 TPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLP 162 (563)
T ss_dssp HHHHHHHHHTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 228 VDVQLELAVP-NWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 228 ~Dv~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
.|+.+++..+ ....+. .... ..+..++.+.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|+
T Consensus 163 ~dv~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~v~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~ 239 (563)
T 2uz1_A 163 WDILMNQIDEDSVIIPD-LVLS--AHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFADY 239 (563)
T ss_dssp HHHHHCEEEGGGSCCCC-CCCC--SSCCBCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHCCCEEECG
T ss_pred HHHhhhhcccccccccc-cccC--CCCCCCCHHHHHHHHHHHHcCCCcEEEECCccccccHHHHHHHHHHHhCCcEEEcC
Confidence 9965543211 100000 0000 011235788899999999999999999999987 677999999999999999999
Q ss_pred CCCCCCCCC-CCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccC-CceEEEEcCCcccccCCCCCCee
Q 040733 305 MGLGLFPCT-DELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT-RAKIVHIDIDSNEIGKVKLPDVS 382 (643)
Q Consensus 305 ~gkg~~~~~-hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~-~~~iI~Id~d~~~i~~~~~~~~~ 382 (643)
+|||.+|++ ||+++|++| .++..+++ ++++|+||++|+++.++.++.+..|.+ ++++||||+|+.+++++++.++.
T Consensus 240 ~~~g~~~~~~~p~~~G~~g-~~~~~~~~-~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~ 317 (563)
T 2uz1_A 240 EGLSMLSGLPDAMRGGLVQ-NLYSFAKA-DAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALG 317 (563)
T ss_dssp GGGGGGTTSCGGGEEEEGG-GGGGTTTT-TCCCSEEEEESCCSSGGGTTTSCSSSCTTSEEEEECSCGGGTTSSSCCSEE
T ss_pred cccCcCCCCCChhhcCCCC-CCCHHHHh-hcCCCEEEEECCCCcccccccccccCCCCCeEEEEECCHHHhCCCCCCCeE
Confidence 999999999 999999999 88887888 999999999999999988877777766 78999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHH-HHHhCCC-c-ccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCC
Q 040733 383 ICADAKLVFNRMNMILESKGVGFMFDFSAWREELHE-QKKKYPF-S-YKTFGEEIPPQYAIQILNELTDDEETIISTGVG 459 (643)
Q Consensus 383 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~-~~~~~~~-~-~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G 459 (643)
+++|++.+|++|.+.+..... ......|.+++.+ .++++.. . ......++++..+++.|++.+++ +.+|+.|+|
T Consensus 318 i~~d~~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~iv~~d~G 394 (563)
T 2uz1_A 318 IVADVGGTIEALAQATAQDAA--WPDRGDWCAKVTDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDA-GVTVVADGA 394 (563)
T ss_dssp ECSCHHHHHHHHHHHHTTSCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHHTTCST-TEEEEECSS
T ss_pred EEcCHHHHHHHHHHhhhhccc--ccCcHHHHHHHHHHHHHHhHhhhhccccCCCcCHHHHHHHHHHhCCC-CcEEEEcCc
Confidence 999999999999987754210 0122457655544 3322210 0 00001279999999999999998 999999999
Q ss_pred hhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhC--CCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEe
Q 040733 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVAN--PGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLIN 537 (643)
Q Consensus 460 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~--p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~N 537 (643)
++.+|..+++..+++++++.++++|+||+++|+|+|+++|. |+++||+++|||+|+|+++||+|++++++|+++||+|
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~n 474 (563)
T 2uz1_A 395 LTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMN 474 (563)
T ss_dssp HHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHHHGGGTTHHHHHHHHTCCCEEEEEE
T ss_pred hHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHHHhCCHHHHHHHHHhCCCeEEEEEe
Confidence 99999999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHhhcc-cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 538 NQYLGMNVEYEDRYFEA-NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 538 N~~~g~~~~~q~~~~~~-~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
|++|+|++++|...|+. +..++. ...+||.++|++||+++++|++.+||+++|+++++.+||+||||++++
T Consensus 475 N~~~~~~~~~~~~~~~~~~~~~~~--------~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~ 546 (563)
T 2uz1_A 475 NQSWGATLHFQQLAVGPNRVTGTR--------LENGSYHGVAAAFGADGYHVDSVESFSAALAQALAHNRPACINVAVAL 546 (563)
T ss_dssp CSBCHHHHHHHHHHTCTTCCCSCB--------CCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHSSSCEEEEEECCS
T ss_pred CCcchHHHHHHHHhcCCCcccCCc--------CCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHHCCCCEEEEEEecc
Confidence 99999999988776654 332221 245899999999999999999999999999999999999999999985
Q ss_pred CCCccc
Q 040733 617 QEHVVP 622 (643)
Q Consensus 617 ~~~~~p 622 (643)
+ +..|
T Consensus 547 ~-~~~p 551 (563)
T 2uz1_A 547 D-PIPP 551 (563)
T ss_dssp C-CCCH
T ss_pred c-cCCc
Confidence 3 3434
No 9
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=100.00 E-value=1.3e-97 Score=844.22 Aligned_cols=539 Identities=22% Similarity=0.276 Sum_probs=473.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC--CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS--NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
+|+++++|++.|+++||++|||+||+++++|+++|.++ +|++|.++||++|+|||+||||+||||+||++|+|||++|
T Consensus 3 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N 82 (590)
T 1v5e_A 3 KINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASH 82 (590)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHT
T ss_pred CccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHH
Confidence 47999999999999999999999999999999999886 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.+++|||+||||++...++++++|++||.++++++|||++++.+++++++.+++||+.|.++||||||| |
T Consensus 83 ~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-i 161 (590)
T 1v5e_A 83 LINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-V 161 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-E
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcccCCCCcccccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-E
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccchhhhccCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWN--QPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++.+++..... ....++.+.. + .++.+.+++++++|.+||||+|++|+|+.++.+++.+|+|++++||++|+
T Consensus 162 P~dv~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~i~~~~~~l~~a~rpvil~G~g~~~a~~~l~~lae~~~~Pv~~t~ 238 (590)
T 1v5e_A 162 PGDFAKVEIDNDQWYSSANSLRKYAP--I-APAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTG 238 (590)
T ss_dssp ETTGGGCEEEGGGCCCCGGGCCCCCC--C-CCCHHHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECT
T ss_pred ccchhhcccCcccccccccccccCCC--C-CCCHHHHHHHHHHHHhCCCeEEEEcCchhHHHHHHHHHHHHHCCCEEEcc
Confidence 99998765432100 0001121111 1 35778899999999999999999999884556899999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccc-cCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERM-TSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~-t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
+|||.+|++||+++|++|++++..++++++++|+||++|++++++. ++.. | ++.++||||+|+.+++++++.++.+
T Consensus 239 ~g~g~~~~~~p~~~G~~g~~g~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~-~~~~~i~id~d~~~~~~~~~~~~~i 315 (590)
T 1v5e_A 239 KNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEGTF--R-NVDNFIQIDIDPAMLGKRHHADVAI 315 (590)
T ss_dssp TCGGGSCTTCTTEEEESSSSSCHHHHHHHHHCSEEEEESCCCTTTTTTTTT--T-TCSEEEEEESCGGGTTSSSCCSEEE
T ss_pred ccCcCCCCCChhhCccCcccCCHHHHHHHHhCCEEEEECCCCcchhccccC--C-CCCeEEEEeCCHHHHCCCcCCCeEE
Confidence 9999999999999999999999999999999999999999998765 1211 3 5779999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccc----CCCCCCCHHHHHHHHHhcCCCCCeEEEeCCC
Q 040733 384 CADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYK----TFGEEIPPQYAIQILNELTDDEETIISTGVG 459 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G 459 (643)
++|++.+|++|.+.+.... ...|.+++.+.+++++.... ....++++.++++.|++.+++ +.++++|+|
T Consensus 316 ~gd~~~~l~~L~~~l~~~~------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ivv~d~G 388 (590)
T 1v5e_A 316 LGDAALAIDEILNKVDAVE------ESAWWTANLKNIANWREYINMLETKEEGDLQFYQVYNAINNHADE-DAIYSIDVG 388 (590)
T ss_dssp ESCHHHHHHHHHHHSCCCC------CCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHSCT-TCEEEECSS
T ss_pred EcCHHHHHHHHHHhhccCC------cHHHHHHHHHHHHHhHhhhhhcccCCCCCcCHHHHHHHHHhhCCC-CCEEEECCc
Confidence 9999999999988764311 13576665544433220000 123469999999999999998 999999999
Q ss_pred hhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCC
Q 040733 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539 (643)
Q Consensus 460 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~ 539 (643)
++.+|..++++.+++++|++++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+||+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~NN~ 468 (590)
T 1v5e_A 389 NSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNT 468 (590)
T ss_dssp HHHHGGGGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECS
T ss_pred hHHHHHHHhcccCCCCeEEcCCCCCcccChHHHHHHHHHhCCCCeEEEEEechHHhchHHHHHHHHHhCCCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHh-hcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC---CCcEEEEEEeC
Q 040733 540 YLGMNVEYEDRY-FEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET---PGPYLLDVMVS 615 (643)
Q Consensus 540 ~~g~~~~~q~~~-~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~---~gp~lIeV~v~ 615 (643)
+|+|++++|... | .+ .++ ....+||.++|++||+++++|++++||+++|+++++. +||+||||.++
T Consensus 469 ~~~~~~~~q~~~~~-~~-~~~--------~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~gp~liev~~~ 538 (590)
T 1v5e_A 469 EYAFIKNKYEDTNK-NL-FGV--------DFTDVDYAKIAEAQGAKGFTVSRIEDMDRVMAEAVAANKAGHTVVIDCKIT 538 (590)
T ss_dssp SCTTGGGTTSSSCC-SC-CCC--------CCCCCCHHHHHHHTTSEEEEECBHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred chHHHHHHHHHhcC-CC-ccc--------cCCCCCHHHHHHHcCCEEEEECCHHHHHHHHHHHHHhcCCCCCEEEEEEec
Confidence 999998776543 3 22 111 1246899999999999999999999999999999987 99999999999
Q ss_pred CCC--------C------------cccccCCCcccc
Q 040733 616 YQE--------H------------VVPMIPYDKSFK 631 (643)
Q Consensus 616 ~~~--------~------------~~p~~~~~~~~~ 631 (643)
+++ + +.||++.+..+.
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 574 (590)
T 1v5e_A 539 QDRPIPVETLKLDSKLYSEDEIKAYKERYEAANLVP 574 (590)
T ss_dssp SCCCCCTTSCCCCTTTSCHHHHHHHHHHTTCTTCCC
T ss_pred ccccccccccccccccccccccccccccccCCCCCC
Confidence 999 6 779999887766
No 10
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=100.00 E-value=1.1e-95 Score=826.47 Aligned_cols=532 Identities=26% Similarity=0.368 Sum_probs=459.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCC-cHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGA-SIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~-~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++++|++.|+++||++|||+||++ +++|+++|. . |++|.++||++|+|||+||||+||||+||++|+|||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~-~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 88 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE-G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNL 88 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST-T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHH
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc-C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHH
Confidence 489999999999999999999999999 999999998 4 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCC-CCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGT-DAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~-~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
++||++|+.+++|||+||||++...+++ +++|++||.++++++|||++++.+++++++.+++||+.|.++|+|||||+|
T Consensus 89 ~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 168 (573)
T 2iht_A 89 STGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISL 168 (573)
T ss_dssp HHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEE
T ss_pred HHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCC--CCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCcee
Q 040733 227 PVDVQLELAVPN--WNQPCKLPSCISSLP-KEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 227 P~Dv~~~~~~~~--~~~~~~~p~~~~~~~-~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~ 301 (643)
|.|++.++.... .+.....+.+.+... ..++.+.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||+
T Consensus 169 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~ 248 (573)
T 2iht_A 169 PVDLLGSSEGIDTTVPNPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVI 248 (573)
T ss_dssp EHHHHTCCTTCC---CCCCCCCCSSCBEEECTTHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEE
T ss_pred cchHhhhhhcccccCCccccccCCCCccccCCCCHHHHHHHHHHHHcCCCeEEEECCCccccCHHHHHHHHHHHHCCeEE
Confidence 999987641000 000001111111100 125677899999999999999999999986 678999999999999999
Q ss_pred ecCCCCCCCCCCCCCccccc-----CCCCcHHHHHhhhcCCEEEEecCc-cCccccCccccccCCceEEEEcCCcccccC
Q 040733 302 CTTMGLGLFPCTDELCLRMV-----GMFGTVYANYAVNECDLLLAAGVR-FNERMTSKLEDFATRAKIVHIDIDSNEIGK 375 (643)
Q Consensus 302 tt~~gkg~~~~~hpl~lG~~-----g~~~~~~~~~~l~~aDlvL~vG~~-~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~ 375 (643)
+|++|||.+|++||+++|++ |..++..++++++++|+||+||++ +.++.++.|.. .+++++||||+|+.++++
T Consensus 249 ~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~ 327 (573)
T 2iht_A 249 TTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQK-GIEKKTVRISPTVNPIPR 327 (573)
T ss_dssp ECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEETCCGGGCCCHHHHCC-SSCCEEEEEESSCCSCTT
T ss_pred EecccCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEECCCccccccccccCC-CCCCeEEEEeCCHHHhCC
Confidence 99999999999999999998 888888889999999999999999 87777655441 256799999999999999
Q ss_pred CCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCC----CC
Q 040733 376 VKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDD----EE 451 (643)
Q Consensus 376 ~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~----~d 451 (643)
+++.++.+++|++.+|++|.+.+.............|+++......+. .....++++.++++.|++.+++ .|
T Consensus 328 ~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 403 (573)
T 2iht_A 328 VYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADP----ETYEDGMRVHQVIDSMNTVMEEAAEPGE 403 (573)
T ss_dssp TCCCSEEEESCHHHHHHHHHHHTTTCCCCCCCCCHHHHHHHHHHHTCC----CCCSSSBCHHHHHHHHHHHHHHHSCTTC
T ss_pred CcCCCeeEeCCHHHHHHHHHHhccccCchhHHHHHHHHHHhhhhhhcc----ccCcCCcCHHHHHHHHHHhcccccCCCC
Confidence 999999999999999999988765421110011223333221111011 1223569999999999999863 16
Q ss_pred eEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCe
Q 040733 452 TIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPV 531 (643)
Q Consensus 452 ~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv 531 (643)
.+++.|+|++.+|..++++.+++++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+
T Consensus 404 ~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~~~~~~~~L~~a~~~~l~~ 483 (573)
T 2iht_A 404 GTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIARLNLPI 483 (573)
T ss_dssp CEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHHHTCCC
T ss_pred cEEEEcCcHhHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHHHHhHHHHHHHHHHhCCCe
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCchhhHHHHHHhhcccccc--cccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEE
Q 040733 532 KILLINNQYLGMNVEYEDRYFEANRAN--SFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYL 609 (643)
Q Consensus 532 ~ivV~NN~~~g~~~~~q~~~~~~~~~~--~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~l 609 (643)
++||+||++|+|++++|...|+.+ .. +. ...+||.++|++||+++++|++.+||+++|+++++.+||+|
T Consensus 484 ~ivv~NN~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~l 554 (573)
T 2iht_A 484 VTVVVNNDTNGLIELYQNIGHHRS-HDPAVK--------FGGVDFVALAEANGVDATRATNREELLAALRKGAELGRPFL 554 (573)
T ss_dssp EEEEEECSBCHHHHHHHHHHHSSC-CGGGTB--------CCCCCHHHHHHHTTCEEEECCSHHHHHHHHHHHHTSSSCEE
T ss_pred EEEEEECCcchhhHHHHHHhcCCC-cCcccc--------CCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEE
Confidence 999999999999999988877654 22 22 23489999999999999999999999999999999999999
Q ss_pred EEEEeCC
Q 040733 610 LDVMVSY 616 (643)
Q Consensus 610 IeV~v~~ 616 (643)
|||.+++
T Consensus 555 iev~~~~ 561 (573)
T 2iht_A 555 IEVPVNY 561 (573)
T ss_dssp EEEEBCC
T ss_pred EEEECCC
Confidence 9999987
No 11
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=100.00 E-value=1.7e-94 Score=809.86 Aligned_cols=521 Identities=20% Similarity=0.284 Sum_probs=457.1
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
++++++|++.|+++||++|||+||+++++|+++|. .+|++|.++||++|+|||+||||+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~-~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~ 80 (528)
T 1q6z_A 2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP-EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMG 80 (528)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC-TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh-hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHH
Confidence 58999999999999999999999999999999994 35999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCc-cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQE-IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
||++|+.+++|||+||||+++..++++++|+ +||.++++++|||++++.+++++++.+++||+.|.++|+|||||+||.
T Consensus 81 ~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (528)
T 1q6z_A 81 ALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPY 160 (528)
T ss_dssp HHHHHHHTTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEG
T ss_pred HHHHHhhcCCCEEEEeCCCcccccCCCcccccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 9999999999999999999999999999999 699999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCce-eecCC
Q 040733 229 DVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPV-TCTTM 305 (643)
Q Consensus 229 Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV-~tt~~ 305 (643)
|++..+..... ......... . ...++.+.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+|| +++++
T Consensus 161 d~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~~~~~ 237 (528)
T 1q6z_A 161 DDWDKDADPQS-HHLFDRHVS-S-SVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSA 237 (528)
T ss_dssp GGTTSBCCGGG-GGGTTCCCC-C-CCCCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSSC
T ss_pred hhhhCcccccc-ccccccCCC-C-CCCCCHHHHHHHHHHHhcCCCeEEEECCccchhhHHHHHHHHHHHHCCCEEEeccC
Confidence 99876542110 000011111 0 1235778899999999999999999999976 67899999999999999 78889
Q ss_pred CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcccc-ccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 306 gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
|||.+|++||+++|++| .++..++++++++|+||++|+++.++.++.+.. +.+++++||||+|+.+++++ +.++.++
T Consensus 238 g~g~~~~~~p~~~G~~g-~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~-~~~~~i~ 315 (528)
T 1q6z_A 238 PRCPFPTRHPCFRGLMP-AGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARA-PMGDAIV 315 (528)
T ss_dssp SBCCSCTTSTTEEEECC-SCHHHHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHHC-SSSEEEE
T ss_pred ccccCCCCCccccCcCC-CCcHHHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHhCCC-CCCeeEe
Confidence 99999999999999999 888889999999999999999999888776644 44578999999999999999 9999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHH
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMW 464 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~ 464 (643)
+|++.+|++|.+.+..... ....|++ ... .......++++.++++.|++.+++ +.+|+.|+|++..|
T Consensus 316 ~d~~~~l~~L~~~~~~~~~----~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~iv~~d~g~~~~~ 382 (528)
T 1q6z_A 316 ADIGAMASALANLVEESSR----QLPTAAP-------EPA-KVDQDAGRLHPETVFDTLNDMAPE-NAIYLNESTSTTAQ 382 (528)
T ss_dssp SCHHHHHHHHHHHSCCCCS----CCCCCCC-------CCC-CCCCCSSSBCHHHHHHHHHHHSCT-TCEEEEECTTSHHH
T ss_pred CCHHHHHHHHHHHhhcccc----chHHHHh-------hhh-cccccCCCcCHHHHHHHHHhhCCC-CeEEEECCcccHHH
Confidence 9999999999877643210 0111211 100 111123569999999999999998 99999999999999
Q ss_pred HHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhh
Q 040733 465 AIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544 (643)
Q Consensus 465 ~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 544 (643)
..++++.+++++|+++++ |+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+||++|+|+
T Consensus 383 ~~~~~~~~~~~~~~~~~g-g~~G~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~~l~~a~~~~l~~~ivv~nN~~~~~~ 461 (528)
T 1q6z_A 383 MWQRLNMRNPGSYYFCAA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGAL 461 (528)
T ss_dssp HHHHCCCCSSSCEEECTT-CCTTSHHHHHHHHHHHCTTSCEEEEEEHHHHTTTGGGHHHHHHHTCCCEEEEEECSBCHHH
T ss_pred HHHhccccCCCcEECCCC-ccccchHHHHHHHHHhCCCCcEEEEECCcHHHhhHHHHHHHHHhCCCeEEEEEeCCcchHh
Confidence 999999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 545 ~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
+.+|...+..++.++. ...+||.++|++||+++++|++.+||+++|+++++.+||+||||++++++
T Consensus 462 ~~~~~~~~~~~~~~~~--------~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~~~ 527 (528)
T 1q6z_A 462 RWFAGVLEAENVPGLD--------VPGIDFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVSPV 527 (528)
T ss_dssp HHHHHHHTCCSCCSCB--------CCCCCHHHHHHHHTCEEEEESSHHHHHHHHHHHHTCSSCEEEEEEBCC--
T ss_pred HHHHHHhcCCCcccCC--------CCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHHCCCcEEEEEEecCCC
Confidence 9988876644332221 25689999999999999999999999999999999999999999998765
No 12
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=100.00 E-value=5.9e-95 Score=820.20 Aligned_cols=530 Identities=22% Similarity=0.325 Sum_probs=449.6
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
...++++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||||+||||+||++|+|||++|
T Consensus 7 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N 86 (568)
T 2c31_A 7 VELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLN 86 (568)
T ss_dssp CCEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHH
T ss_pred CCcccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhCCCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence 34689999999999999999999999999999999998767999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccC--CCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEE
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLG--TDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLI 224 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g--~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i 224 (643)
+++||++|+.+++|||+||||+++..++ ++++|++||.++++++|||++++.+++++++.+++||+.|.++++|||||
T Consensus 87 ~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 166 (568)
T 2c31_A 87 GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYV 166 (568)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 9999999999999999999999999888 68999999999999999999999999999999999999999999999999
Q ss_pred EcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceee
Q 040733 225 DIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 225 ~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~t 302 (643)
+||.|++.+++..........+.+.......++.+.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||++
T Consensus 167 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~ 246 (568)
T 2c31_A 167 DLPAKLFGQTISVEEANKLLFKPIDPAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLP 246 (568)
T ss_dssp EEETHHHHCEEEHHHHHHHCCCCSCSSCCCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEE
T ss_pred eCCHHHhhccccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcccccccHHHHHHHHHHHhCCCEEe
Confidence 99999986544210000000111110111235788999999999999999999999987 6789999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCcccc-Ccccccc-CCceEEEEcCCcccccCCCCCC
Q 040733 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT-SKLEDFA-TRAKIVHIDIDSNEIGKVKLPD 380 (643)
Q Consensus 303 t~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t-~~~~~~~-~~~~iI~Id~d~~~i~~~~~~~ 380 (643)
|++|||.+|++||+++|.. .+++++++|+||+||++++++.+ +....|. +++++||||+|+.+++++++.+
T Consensus 247 t~~~~g~~~~~~p~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~ 319 (568)
T 2c31_A 247 MGMAKGLLPDNHPQSAAAT-------RAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIA 319 (568)
T ss_dssp CGGGTTSSCTTCTTBCGGG-------HHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCS
T ss_pred cccccccCCCCChhhcchH-------HHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCC
Confidence 9999999999999999852 46788999999999999987654 3334565 6789999999999999999999
Q ss_pred eeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc----ccCC--CCCCCHHHHHHHHHhcC--CCCCe
Q 040733 381 VSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFS----YKTF--GEEIPPQYAIQILNELT--DDEET 452 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~----~~~~--~~~i~~~~~~~~L~~~l--~~~d~ 452 (643)
+.+++|++.+|++|.+.+.... .....|.+++.+.++++... .... ..++++..+++.|++.+ ++ +.
T Consensus 320 ~~i~~d~~~~l~~L~~~l~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~ 394 (568)
T 2c31_A 320 APVVGDIKSAVSLLRKALKGAP----KADAEWTGALKAKVDGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFMLANP-DI 394 (568)
T ss_dssp EEEESCHHHHHHHHHHHHTTCC----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCBCHHHHHHHHHHHHHHCC-SS
T ss_pred ceeeCCHHHHHHHHHHhhhhcC----CCcHHHHHHHHHHHHhhhhhhhhhhcccccCCCcCHHHHHHHHHHHhcCCC-Ce
Confidence 9999999999999998775421 12356876665443321100 0011 35699999999999999 88 88
Q ss_pred EEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeE
Q 040733 453 IISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVK 532 (643)
Q Consensus 453 iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ 532 (643)
+++.|.|++..|...++....|++++.++++|+||+++|+|+|++++ |+++||+++|||+|+|+++||+|++++++|++
T Consensus 395 iv~~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~ 473 (568)
T 2c31_A 395 SLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-TGKPVIAVEGDSAFGFSGMELETICRYNLPVT 473 (568)
T ss_dssp EEEEESSHHHHHHHHHCCCCSTTCEEESTTTTCSSCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEE
T ss_pred EEEECChhHHHHHHHHhcccCCCeEEcCCCCccccccHHHHHHHHhC-CCCcEEEEEcchHhhccHHHHHHHHHhCCCeE
Confidence 99999887766677778888899999999999999999999999999 89999999999999999999999999999999
Q ss_pred EEEEeCCCc-hhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 533 ILLINNQYL-GMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 533 ivV~NN~~~-g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
|||+||++| .+. ..+. ++.+... .....+||.++|++||+++++|++.+||+++|+++++.+||+|||
T Consensus 474 ivv~NN~~~~~~~-~~~~--~~~~~~~--------~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~lie 542 (568)
T 2c31_A 474 VIIMNNGGIYKGN-EADP--QPGVISC--------TRLTRGRYDMMMEAFGGKGYVANTPAELKAALEEAVASGKPCLIN 542 (568)
T ss_dssp EEEEESSBSSCSC-CCCS--BTTBCCT--------TBCCCCCHHHHHHTTTCEEEEESSHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEeCchhHHHH-HHHh--hcCCccc--------CcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 999999985 432 1110 1111110 013468999999999999999999999999999999889999999
Q ss_pred EEeCCCCCc
Q 040733 612 VMVSYQEHV 620 (643)
Q Consensus 612 V~v~~~~~~ 620 (643)
|+++++++.
T Consensus 543 v~~~~~~~~ 551 (568)
T 2c31_A 543 AMIDPDAGV 551 (568)
T ss_dssp EEBCTTSSC
T ss_pred EEeccccCC
Confidence 999988754
No 13
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=100.00 E-value=1.8e-94 Score=815.94 Aligned_cols=530 Identities=22% Similarity=0.336 Sum_probs=448.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
.|+++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||||+||||+||++|+|||++|++
T Consensus 7 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~ 86 (564)
T 2q28_A 7 MTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGL 86 (564)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHH
T ss_pred cCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHHH
Confidence 36899999999999999999999999999999999876699999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccC--CCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLG--TDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g--~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+||++|+.+++|||+||||+++..++ ++++|++||.++++++|||++++.+++++++.+++||+.|.++++|||||+|
T Consensus 87 ~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 166 (564)
T 2q28_A 87 TALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDL 166 (564)
T ss_dssp HHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 99999999999999999999999887 7899999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 227 PVDVQLELAVPN-WNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 227 P~Dv~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
|.|++.+++... +..+ ..+.+.......++.+.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||++|
T Consensus 167 P~dv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t 245 (564)
T 2q28_A 167 PANVLAATMEKDEALTT-IVKVENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPM 245 (564)
T ss_dssp EHHHHHCEEEHHHHHHT-CCCCSCSSCCEEECHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEC
T ss_pred CHHHhhccccccccccc-cccccCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcccccccHHHHHHHHHHHhCCCEEec
Confidence 999986644210 0000 0111110001235778899999999999999999999987 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCcccc-CccccccCCceEEEEcCCcccccCCCCCCee
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT-SKLEDFATRAKIVHIDIDSNEIGKVKLPDVS 382 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t-~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~ 382 (643)
++|||.+|++||+++|.. .+++++++|+||+||++++++.+ +. ..|.+++++||||+|+.+++++++.++.
T Consensus 246 ~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~~ 317 (564)
T 2q28_A 246 SMAKGILEDTHPLSAAAA-------RSFALANADVVMLVGARLNWLLAHGK-KGWAADTQFIQLDIEPQEIDSNRPIAVP 317 (564)
T ss_dssp GGGTTSSCTTCTTBCGGG-------HHHHHHHCSEEEEESCCCSGGGGGGT-TTSCTTCEEEEEESCGGGTTSSSCCSEE
T ss_pred cCccccCCCCChhhcChH-------HHhHhhcCCEEEEECCcccccccccc-cccCCCCeEEEEeCCHHHhcCCCCCCeE
Confidence 999999999999999852 46788999999999999976544 33 4566778999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC----cccCCCCCCCHHHHHHHHHhcC--CCCCeEEEe
Q 040733 383 ICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF----SYKTFGEEIPPQYAIQILNELT--DDEETIIST 456 (643)
Q Consensus 383 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~L~~~l--~~~d~iv~~ 456 (643)
+++|++.+|++|.+.+..... .....|.+++.+.++++.. .......++++.++++.|++.+ ++ |.+++.
T Consensus 318 i~~d~~~~l~~L~~~l~~~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-d~ivv~ 393 (564)
T 2q28_A 318 VVGDIASSMQGMLAELKQNTF---TTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQ-DIYLVN 393 (564)
T ss_dssp EESCHHHHHHHHHHHHHHSCC---CCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSBCHHHHHHHHHHHHTTCT-TCEEEE
T ss_pred EEcCHHHHHHHHHHHhhhcCc---CCcHHHHHHHHHHHHhhhhhhhhhhccCCCCcCHHHHHHHHHHHhcCCC-CEEEEE
Confidence 999999999999988765321 1235687766554332110 0011235699999999999999 88 889988
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|.|++..|...++....|++++.++++|+||+++|+|+|++++ |+++||+++|||+|+|+++||+|++++++|++|||+
T Consensus 394 dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~ivv~ 472 (564)
T 2q28_A 394 EGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIF 472 (564)
T ss_dssp ESSHHHHHHHHHSCCCSSSCEEESTTTTCTTCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEEEEE
T ss_pred CCchHHHHHHHHhcccCCCeEecCCCCCcccchHHHHHHHhhc-CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEE
Confidence 9777666666678888899999999999999999999999999 899999999999999999999999999999999999
Q ss_pred eCCCc-hhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 537 NNQYL-GMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 537 NN~~~-g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
||++| ++..+ + ..+..+..... ....+||.++|++||+++++|++++||+++|+++++.+||+||||.++
T Consensus 473 NN~~~~~~~~~-~-~~~~~~~~~~~-------~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~ 543 (564)
T 2q28_A 473 NNGGIYRGDGV-D-LSGAGAPSPTD-------LLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQSRKPTIINVVID 543 (564)
T ss_dssp ECSBSSCSCCC-C-TTSSCCCCTTB-------CCTTCCGGGGGGGGTCEEEEECSHHHHHHHHHHHHHHTSCEEEEEEBC
T ss_pred eCchhHHHHHH-H-HhccCCccccc-------cCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 99995 55321 1 11111111110 124689999999999999999999999999999998899999999999
Q ss_pred CCCCcc
Q 040733 616 YQEHVV 621 (643)
Q Consensus 616 ~~~~~~ 621 (643)
++++..
T Consensus 544 ~~~~~~ 549 (564)
T 2q28_A 544 PAAGTE 549 (564)
T ss_dssp TTSSCC
T ss_pred cccCCC
Confidence 887553
No 14
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=8.7e-95 Score=819.65 Aligned_cols=542 Identities=16% Similarity=0.147 Sum_probs=421.9
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
++++++|++.|+++||++|||+||+++++|+++|.+.+ |++|.+|||++|+|||+||||+|||||||++|+|||++|++
T Consensus 11 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~~ 90 (578)
T 3lq1_A 11 TDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANYF 90 (578)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTTH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhhh
Confidence 58999999999999999999999999999999999875 99999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHH-------HHHHHHHHhhcCCCCe
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPR-------IIKEAFFIATSGRPGP 221 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~-------~l~~A~~~A~s~~~GP 221 (643)
+||++|+.|++|||+||||+|...+|+++||++||.++|+++|||++++.+++++++ ++++||+.|.++|+||
T Consensus 91 ~gia~A~~d~vPll~itG~~p~~~~g~~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GP 170 (578)
T 3lq1_A 91 PAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGP 170 (578)
T ss_dssp HHHHHHHHTTCCEEEEEEECCGGGTTSSCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHhcCCCeEEEeCCCCHHhhcCCCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 999999999999999999999999999999999999999999999999999998764 8999999999999999
Q ss_pred EEEEcccchhhhc-cCCC-CC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHh
Q 040733 222 VLIDIPVDVQLEL-AVPN-WN--QPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLT 296 (643)
Q Consensus 222 V~i~iP~Dv~~~~-~~~~-~~--~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~l 296 (643)
|||+||.|++..+ +... +. .+...+......+..++++.+++++++|++ |||+|++|+|+. ++.+++++|+|++
T Consensus 171 V~l~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~-~rPvIl~G~g~~~~~~~~l~~lae~~ 249 (578)
T 3lq1_A 171 VHLNFPLREPLVPILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECTG-KKGVFVVGPIDKKELEQPMVDLAKKL 249 (578)
T ss_dssp EEEEEECCSCCCCCCSSCCC------------CCEEEEECHHHHHHHHHHTTT-SCEEEEECSCCCTTCHHHHHHHHHHH
T ss_pred EEEECccCCCCCCCcccchhcccCccccccccccCccCCChHHHHHHHHHhcc-CCeEEEECCCCChHHHHHHHHHHHhc
Confidence 9999999976543 1110 00 000000000000122578889999999999 999999999987 5678999999999
Q ss_pred CCceeecC-CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccC
Q 040733 297 GIPVTCTT-MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGK 375 (643)
Q Consensus 297 g~PV~tt~-~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~ 375 (643)
|+||++|+ ++++.+|++||+++|.++.......+..+.++|+||.||+++.++.+..|....+++++||||+|+.++++
T Consensus 250 ~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~aDlvl~~G~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 329 (578)
T 3lq1_A 250 GWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIRFYVVDPGAAWKDP 329 (578)
T ss_dssp TCCEEECGGGSTTSBSSCCSSEECCHHHHTTSHHHHHHTCCSEEEEESSCCSCHHHHHHHHHCCSSEEEEECTTCCCCCT
T ss_pred CcEEEEecCCCCCCCCCCCccccccHHHHhcCccccccCCCCEEEEeCCcccchhHHHHHhcCCCCEEEEECCCCCcCCC
Confidence 99999995 57999999999999987655544555678899999999998754333222221356899999999999999
Q ss_pred CCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC---cccCCCCCCCHHHHHHHHHhcCCCCCe
Q 040733 376 VKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF---SYKTFGEEIPPQYAIQILNELTDDEET 452 (643)
Q Consensus 376 ~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~L~~~l~~~d~ 452 (643)
++.+++.|++|++.+|++|++.+.... ....|.+++.+.++++.. .......++++.++++.|++.+++ +.
T Consensus 330 ~~~~~~~i~~d~~~~l~~L~~~l~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ 403 (578)
T 3lq1_A 330 IKAVTDMIHCDERFLLDIMQQNMPDDA-----KDAAWLNGWTSYNKVAREIVLAEMANTTILEEGKIVAELRRLLPD-KA 403 (578)
T ss_dssp TCCCSEEECSCHHHHHHHHHHHSCSTT-----CCHHHHHHHHHHHHHHHHHHHHHSCC----CTTHHHHHHHHHSCS-EE
T ss_pred CcCceEEEEeCHHHHHHHHHhhccCCC-----CcHHHHHHHHHHHHHHhHHHHHhhhcCCCCCHHHHHHHHHHhCCC-CC
Confidence 999999999999999999987664321 134676655544322110 001224579999999999999999 88
Q ss_pred EEEeCCChhHHHHHHhcc-ccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCe
Q 040733 453 IISTGVGQHQMWAIQFYM-YKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPV 531 (643)
Q Consensus 453 iv~~d~G~~~~~~~~~~~-~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv 531 (643)
+|+.|.|....|..+++. ..++.+++.+.|.+++|+++|+|+|+++ ++++||+|+|||||+|++|||+|++++++|+
T Consensus 404 iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~~g~l~~AiGaa~--~~~~vv~i~GDGsf~~~~~eL~ta~~~~l~~ 481 (578)
T 3lq1_A 404 GLFIGNSMPIRDVDTYFSQIDKKIKMLANRGANGIDGVVSSALGASV--VFQPMFLLIGDLSFYHDMNGLLMAKKYKMNL 481 (578)
T ss_dssp EEEECSSHHHHHHHHHCCCCSSEEEEECCCSSCCSSSHHHHHHHHTT--TSSSEEEEEEHHHHHHTGGGGHHHHHTTCCE
T ss_pred eEEEeCccHHHHHHHhhcccCCCceEEeCCCccccccHHHHHHHHhc--CCCCEEEEEchHHHHhhHHHHHhhccCCCCe
Confidence 988999988778777774 4556677777665566668999999974 5899999999999999999999999999999
Q ss_pred EEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 532 KILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 532 ~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
++||+||++|||+++++...+. ......+++ ...+||.++|++||+++++|++.+||+++|+++++.+||+|||
T Consensus 482 ~ivv~NN~~~g~~~~~~~~~~~-~~~~~~~~~-----~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~lie 555 (578)
T 3lq1_A 482 TIVIVNNDGGGIFSFLPQANEP-KYFESLFGT-----STELDFRFAAAFYDADYHEAKSVDELEEAIDKASYHKGLDIIE 555 (578)
T ss_dssp EEEEECCC-------------------------------CCCTHHHHHHTTCEEEECCSHHHHHHHHHHHTTSSSEEEEE
T ss_pred EEEEEECCcCcccccccccccc-chhhhhccC-----CCCCCHHHHHHHcCCceEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 9999999999999865321110 011111222 2468999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccccCC
Q 040733 612 VMVSYQEHVVPMIPY 626 (643)
Q Consensus 612 V~v~~~~~~~p~~~~ 626 (643)
|.++++++..|+...
T Consensus 556 v~~~~~~~~~~~~~~ 570 (578)
T 3lq1_A 556 VKTNRHENKANHQAL 570 (578)
T ss_dssp EC-------------
T ss_pred EECCccccHHHHHhh
Confidence 999999998886643
No 15
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=100.00 E-value=1.8e-94 Score=821.06 Aligned_cols=534 Identities=16% Similarity=0.156 Sum_probs=449.3
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
..+++++++|++.|+++||++|||+||+++++|+++|.+.+ |++|.+|||++|+|||+||||+||||+||++|+|||++
T Consensus 28 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~ 107 (604)
T 2x7j_A 28 NPITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAA 107 (604)
T ss_dssp CHHHHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHHH
Confidence 44679999999999999999999999999999999998865 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCc-------HHHHHHHHHHHhhcCC
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDD-------IPRIIKEAFFIATSGR 218 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~-------i~~~l~~A~~~A~s~~ 218 (643)
|+++||++|+.+++|||+||||+++..++++++|++||.++++++|||++++.++++ +++.+++||+.|.++|
T Consensus 108 N~~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~ 187 (604)
T 2x7j_A 108 NFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRP 187 (604)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCGGGSSSCCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCeEEEEcccchhhhccCCCC-CC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHH
Q 040733 219 PGPVLIDIPVDVQLELAVPNW-NQ---PCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFV 293 (643)
Q Consensus 219 ~GPV~i~iP~Dv~~~~~~~~~-~~---~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~la 293 (643)
+|||||+||.|++..+..... .. ...++.+... ++.++.+.+++++++|.+||||+|++|+|+. ++.+++++||
T Consensus 188 ~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~~~~a~~~l~~la 266 (604)
T 2x7j_A 188 MGPVHVNVPLREPLMPDLSDEPFGRMRTGRHVSVKTG-TQSVDRESLSDVAEMLAEAEKGMIVCGELHSDADKENIIALS 266 (604)
T ss_dssp CCEEEEEEECCSCCCCCTTSCTTCCSSSSCSSEEECC-EEECCTGGGHHHHHHHHHCSSEEEEECCCCCHHHHHHHHHHH
T ss_pred CCcEEEEcccCccCCCccccccccccccccccccccc-CccCChhhHHHHHHHHhhcCCeEEEECCCCcHHHHHHHHHHH
Confidence 999999999998764431110 00 0011111100 1124567899999999999999999999986 5668899999
Q ss_pred HHhCCceeecCCCCCCC-CCCCCCcccccC-CCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcc
Q 040733 294 GLTGIPVTCTTMGLGLF-PCTDELCLRMVG-MFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSN 371 (643)
Q Consensus 294 e~lg~PV~tt~~gkg~~-~~~hpl~lG~~g-~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~ 371 (643)
|++|+||++|+++++.+ |++||+++|++| ..+...++++++ +|+||+||+++.++.+..|....++.++||||+|+.
T Consensus 267 e~~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 345 (604)
T 2x7j_A 267 KALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLR-PDVVIRFGPMPVSKPVFLWLKDDPTIQQIVIDEDGG 345 (604)
T ss_dssp HHHTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHHHC-CSEEEEESSCCSCHHHHHHHHHCTTSEEEEECTTCC
T ss_pred HhcCceEEEcccccccccCCCCcceechHHHHhcCchhhhhcC-CCEEEEECCcCccHHHHHHHhhCCCCeEEEECCCCC
Confidence 99999999999887665 888999999875 667777777776 899999999987654433322122568999999999
Q ss_pred cccCCCCCCeeEecCHHHHHHHHHHHHh-hcCCCCCCChhHHHHHHHHHHHhCCC--cccCCCCCCCHHHHHHHHHhcCC
Q 040733 372 EIGKVKLPDVSICADAKLVFNRMNMILE-SKGVGFMFDFSAWREELHEQKKKYPF--SYKTFGEEIPPQYAIQILNELTD 448 (643)
Q Consensus 372 ~i~~~~~~~~~i~~D~~~~L~~L~~~l~-~~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~L~~~l~ 448 (643)
++++++++++.+++|++.+|++|.+.+. .. ....|.+++.+.++.... .......++++.++++.|++.++
T Consensus 346 ~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~lp 419 (604)
T 2x7j_A 346 WRDPTQASAHMIHCNASVFAEEIMAGLTAAT------RSSEWLEKWQFVNGRFREHLQTISSEDVSFEGNLYRILQHLVP 419 (604)
T ss_dssp CCCTTSCCSEEECSCHHHHHHHHHHTSCSSC------CCCHHHHHHHHHHHHHHHHHHTSCCCCTTSHHHHHHHHHHHSC
T ss_pred ccCCCccceEEEEcCHHHHHHHHHHhhcCCC------CcHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999987663 11 123566544333221110 00012357999999999999999
Q ss_pred CCCeEEEeCCChhHHHHHHhccccC-CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHh
Q 040733 449 DEETIISTGVGQHQMWAIQFYMYKR-ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAE 527 (643)
Q Consensus 449 ~~d~iv~~d~G~~~~~~~~~~~~~~-p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~ 527 (643)
+ |.+|+.|+|++..|..+++.... +++++++.++++||+++|+|+|+++| ++++||+++|||+|+|+++||+|++++
T Consensus 420 ~-d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~G~~~ig~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~eL~ta~~~ 497 (604)
T 2x7j_A 420 E-NSSLFVGNSMPIRDVDTFFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEG-TKAPVTLVIGDLSFYHDLNGLLAAKKL 497 (604)
T ss_dssp T-TCEEEECTTHHHHHHHHHCCCBSCCCEEECCTTTCCSSSHHHHHHHHHHH-HTSCEEEEEEHHHHHHTGGGGHHHHHH
T ss_pred C-CCEEEEECCHHHHHHHHhcccCCCCceEEeCCCcCCcCcHHHHHHHHHhc-CCCcEEEEEccHHHHhHHHHHHHhhhc
Confidence 8 89999999999999988888765 89999999999999999999999999 689999999999999999999999999
Q ss_pred CCCeEEEEEeCCCchhhHHHHH----HhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh
Q 040733 528 NIPVKILLINNQYLGMNVEYED----RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE 603 (643)
Q Consensus 528 ~lpv~ivV~NN~~~g~~~~~q~----~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~ 603 (643)
++|++|||+||++|+|+++++. ..|+ + .+++ ...+||.++|++||+++++|++++||+++|+++++
T Consensus 498 ~lp~~ivv~NN~~~~i~~~~~~~q~~~~~~-~----~~~~-----~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~ 567 (604)
T 2x7j_A 498 GIPLTVILVNNDGGGIFSFLPQASEKTHFE-D----LFGT-----PTGLDFKHAAALYGGTYSCPASWDEFKTAYAPQAD 567 (604)
T ss_dssp CCCEEEEEEECSSCGGGGGSGGGSCHHHHH-H----HTTC-----CCCCCTHHHHHHTTCEEECCSSHHHHHHHCCCCCS
T ss_pred CCCeEEEEEeCCCCcccccCCCCccchhhH-h----hccC-----CCCCCHHHHHHHcCCeEEecCCHHHHHHHHHHHHh
Confidence 9999999999999999765432 1221 1 1111 24689999999999999999999999999999998
Q ss_pred CCCcEEEEEEeCCCCCc
Q 040733 604 TPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 604 ~~gp~lIeV~v~~~~~~ 620 (643)
.+||+||||+++++++.
T Consensus 568 ~~gp~liev~~~~~~~~ 584 (604)
T 2x7j_A 568 KPGLHLIEIKTDRQSRV 584 (604)
T ss_dssp SCCEEEEEEECCHHHHH
T ss_pred CCCCEEEEEECCccccH
Confidence 89999999999987654
No 16
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=100.00 E-value=4e-92 Score=797.03 Aligned_cols=524 Identities=19% Similarity=0.259 Sum_probs=446.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+|+++++|++.|+++||++|||+||+++++|+++|.+.+ |++|.++||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (568)
T 2wvg_A 2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKG-AAAAVVTYSVGALSA 80 (568)
T ss_dssp CEEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred CcCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHH
Confidence 579999999999999999999999999999999998875 999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCC--------CccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAF--------QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~--------Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
++||++|+.+++|||+||||++...++++.+ |..||.++++++|||++++.+++++++.+++||+.|.+++
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~- 159 (568)
T 2wvg_A 81 FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK- 159 (568)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999998877542 3347999999999999999999999999999999999987
Q ss_pred CeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhC
Q 040733 220 GPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTG 297 (643)
Q Consensus 220 GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg 297 (643)
|||||+||.|++..++......+ .+.......+.++.+.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|
T Consensus 160 GPV~l~iP~dv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~ 237 (568)
T 2wvg_A 160 KPVYLEIACNIASMPCAAPGPAS--ALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALG 237 (568)
T ss_dssp CCEEEEEEGGGTTSEECEECCTH--HHHCCCCCCHHHHHHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHHHHC
T ss_pred CCEEEEechhHhcCcccCCCccc--ccccCCCCCccccHHHHHHHHHHHHhCCCCEEEECccccccchHHHHHHHHHHhC
Confidence 99999999999876543111000 000000000112356799999999999999999999987 67899999999999
Q ss_pred CceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCC
Q 040733 298 IPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKV 376 (643)
Q Consensus 298 ~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~ 376 (643)
+||++|++|||.+|++||+++|++ |..++..++++++++|+||+||+++.++.++.|..+.++.++||||+|+.+++++
T Consensus 238 ~Pv~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 317 (568)
T 2wvg_A 238 GAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGI 317 (568)
T ss_dssp CEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHHCSEEEEESCCCBTTTTTTTTCCCCTTTEEEECSSEEEETTE
T ss_pred CCEEEchhcCccCCCCCCceeccccCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCcEEEEeCChhhcCCe
Confidence 999999999999999999999985 8888888899999999999999999988887666666678999999999999876
Q ss_pred CCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHH-hCCCc-ccCCCCCCCHHHHHHHHHhcCCCCCeEE
Q 040733 377 KLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKK-KYPFS-YKTFGEEIPPQYAIQILNELTDDEETII 454 (643)
Q Consensus 377 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~-~~~~~-~~~~~~~i~~~~~~~~L~~~l~~~d~iv 454 (643)
+..++ +++.+|++|.+.+... ...|.+ +.+.++ ..... ......++++.++++.|++.+++ +.+|
T Consensus 318 ~~~~~----~~~~~l~~L~~~l~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~iv 384 (568)
T 2wvg_A 318 RFPSV----HLKDYLTRLAQKVSKK-------TGALDF-FKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTP-NTTV 384 (568)
T ss_dssp EEESC----CHHHHHHHHHHHCCCC-------CHHHHH-HHHTTCCSCCCCCCCCTTSBCCHHHHHHHHHTTCCT-TEEE
T ss_pred ecCCC----CHHHHHHHHHHhcccc-------ccchhh-hhhhhhhcccccccCCCCCccCHHHHHHHHHHhCCC-CCEE
Confidence 55443 4799999998765421 234643 222221 11111 11123469999999999999998 9999
Q ss_pred EeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEE
Q 040733 455 STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKIL 534 (643)
Q Consensus 455 ~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 534 (643)
++|+|++. |..+++..+++++++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|++||
T Consensus 385 ~~d~G~~~-~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~G~ala~~~~~vv~i~GDGs~~~~~~el~ta~~~~l~~~iv 463 (568)
T 2wvg_A 385 IAETGDSW-FNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIF 463 (568)
T ss_dssp EECSSHHH-HHHHTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEE
T ss_pred EEcCcHHH-HHHhhcccCCCCeEEeCCCcchhhhHHHHHHHHHHhCCCCcEEEEEcChhHhccHHHHHHHHHcCCCcEEE
Confidence 99999985 78899998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCC---------CEEEeCChhHHHHHHHHHHhC-
Q 040733 535 LINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGI---------PAARVTKKKDVRAAIQLMLET- 604 (643)
Q Consensus 535 V~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~---------~~~~V~~~~eL~~al~~al~~- 604 (643)
|+||++|+|+++++...|. ....+||.++|++||+ ++++|++.+||+++|+++++.
T Consensus 464 v~NN~~~~~~~~~~~~~~~--------------~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~~~~el~~al~~a~~~~ 529 (568)
T 2wvg_A 464 LINNYGYTIEVMIHDGPYN--------------NIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANT 529 (568)
T ss_dssp EEECSSCHHHHTTSCCGGG--------------CCCCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHHCC
T ss_pred EEECCcceEeeeeccCCCc--------------CCCCCCHHHHHHHhCCCcccccCCcceEEeCCHHHHHHHHHHHHhcC
Confidence 9999999999865422111 1245899999999999 899999999999999999987
Q ss_pred CCcEEEEEEeCCCCCccccc
Q 040733 605 PGPYLLDVMVSYQEHVVPMI 624 (643)
Q Consensus 605 ~gp~lIeV~v~~~~~~~p~~ 624 (643)
+||+||||++++++...++.
T Consensus 530 ~gp~liev~~~~~~~~~~~~ 549 (568)
T 2wvg_A 530 DGPTLIECFIGREDCTEELV 549 (568)
T ss_dssp SSCEEEEEECCTTCCCHHHH
T ss_pred CCcEEEEEEcCccccCHHHH
Confidence 99999999999988665443
No 17
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=100.00 E-value=7.8e-92 Score=794.36 Aligned_cols=522 Identities=19% Similarity=0.250 Sum_probs=445.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+|+++++|++.|+++||++|||+||+++++|+++|.+.+ |++|.++||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (566)
T 2vbi_A 2 TYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISA 80 (566)
T ss_dssp CCBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHH
Confidence 479999999999999999999999999999999998875 999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCC--------CccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAF--------QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~--------Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
++||++|+.+++|||+||||++...++++.+ |..||.++++++|||++++.+++++++.+++||+.|.+++
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~- 159 (566)
T 2vbi_A 81 MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRER- 159 (566)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999998877642 2238999999999999999999999999999999999987
Q ss_pred CeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhC
Q 040733 220 GPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTG 297 (643)
Q Consensus 220 GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg 297 (643)
|||||+||.|++.+++......+ .+.......+.++.+.+++++++|.+||||+|++|+|+. ++.+++++|+|++|
T Consensus 160 GPV~l~iP~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~ 237 (566)
T 2vbi_A 160 KPAYLDIACNIASEPCVRPGPVS--SLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQ 237 (566)
T ss_dssp CCEEEEEETTTTTSBCCEECCCS--CSCCCBCCCHHHHHHHHHHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHHHHC
T ss_pred CCEEEEechhhcCCeecCCCCCc--ccCCCCCCCcchHHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhC
Confidence 99999999999876543111111 110000000112346799999999999999999999997 67899999999999
Q ss_pred CceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCC
Q 040733 298 IPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKV 376 (643)
Q Consensus 298 ~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~ 376 (643)
+||++|++|||.+|++||+++|++ |..++..++++++++|+||+||+++.++.++.|..+.++.++||||+|+.+++++
T Consensus 238 ~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 317 (566)
T 2vbi_A 238 CAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVDGR 317 (566)
T ss_dssp CEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESCCCBTTTTTTTTSCCCSTTEEEECSSEEEETTE
T ss_pred CCEEEccccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCChheeCCc
Confidence 999999999999999999999985 8888888899999999999999999988887776666778999999999999986
Q ss_pred CCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEe
Q 040733 377 KLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIST 456 (643)
Q Consensus 377 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~ 456 (643)
+..++ +++.+|++|.+.+... ...|.+ +.+.+.... .. ....++++..+++.|++.+++ |.+|++
T Consensus 318 ~~~~~----~~~~~l~~L~~~l~~~-------~~~~~~-~~~~~~~~~-~~-~~~~~l~~~~~~~~l~~~l~~-~~iv~~ 382 (566)
T 2vbi_A 318 AYDGF----TLRAFLQALAEKAPAR-------PASAQK-SSVPTCSLT-AT-SDEAGLTNDEIVRHINALLTS-NTTLVA 382 (566)
T ss_dssp EEESS----CHHHHHHHHHHHCCCC-------CHHHHT-SCCCCCCCC-CC-CTTSCCCHHHHHHHHHHHCCT-TEEEEE
T ss_pred ccCCc----cHHHHHHHHHHhcccc-------ccchhh-hhhhhhccC-CC-CCCCccCHHHHHHHHHHhcCC-CCEEEE
Confidence 65554 4688999988765321 134522 111111110 11 123469999999999999998 999999
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++. |..++++.+++++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 383 d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~ivv~ 461 (566)
T 2vbi_A 383 ETGDSW-FNAMRMTLPRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLI 461 (566)
T ss_dssp CSSHHH-HHHHTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHTCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEE
T ss_pred CCchHH-HhhhheECCCCCEEEecCcccchhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHHHHHHHHhCCCcEEEEE
Confidence 999985 8888999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCC-----CEEEeCChhHHHHHHHHHHhC-CCcEEE
Q 040733 537 NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGI-----PAARVTKKKDVRAAIQLMLET-PGPYLL 610 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~-----~~~~V~~~~eL~~al~~al~~-~gp~lI 610 (643)
||++|+|++.++...|. ....+||.++|++||+ ++++|++.+||+++|+++++. +||.||
T Consensus 462 nN~~~~~~~~~~~~~~~--------------~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~li 527 (566)
T 2vbi_A 462 NNRGYVIEIAIHDGPYN--------------YIKNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKANTRGPTLI 527 (566)
T ss_dssp ECSSCHHHHTTSCCGGG--------------CCCCCCTTTHHHHHHTTTCCCEEEEECSHHHHHHHHHHHHHCCSSCEEE
T ss_pred ECCcceEEEeeccCCcc--------------CCCCCCHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHHHHhcCCCcEEE
Confidence 99999999865522211 1246899999999999 999999999999999999987 999999
Q ss_pred EEEeCCCCCccccc
Q 040733 611 DVMVSYQEHVVPMI 624 (643)
Q Consensus 611 eV~v~~~~~~~p~~ 624 (643)
||++++++...++.
T Consensus 528 ev~~~~~~~~~~~~ 541 (566)
T 2vbi_A 528 ECQIDRTDCTDMLV 541 (566)
T ss_dssp EEECCTTCCCHHHH
T ss_pred EEEeCcccCcHHHH
Confidence 99999988665443
No 18
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=100.00 E-value=1.7e-92 Score=797.33 Aligned_cols=523 Identities=16% Similarity=0.142 Sum_probs=409.0
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+++++|+|++.|+++||++|||+||+++++|+++|.+.+ |++|.+|||++|+|||+||||+|||||||++|+|||++|+
T Consensus 7 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N~ 86 (556)
T 3hww_A 7 NRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANL 86 (556)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHTT
T ss_pred hhHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHhh
Confidence 578999999999999999999999999999999998765 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCc------HHHHHHHHHHHhhcCCCCe
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDD------IPRIIKEAFFIATSGRPGP 221 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~------i~~~l~~A~~~A~s~~~GP 221 (643)
++||++||.|++|||+||||+++..+|+++||++||.++|+++|||++++.++++ +++++++|| .++||||
T Consensus 87 ~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~---~~~r~GP 163 (556)
T 3hww_A 87 YPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHAL---GTLHAGG 163 (556)
T ss_dssp HHHHHHHHHHCCCEEEEEEECCGGGSSSSCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHH---HSCCSSC
T ss_pred hHHHHHHHHhCCCeEEEeCCCCHHHhccCCCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHH---hcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999875 899999998 3689999
Q ss_pred EEEEcccchhhh-ccCCC---CCCCCC--CCCCCCCCCCCCCHHHH-HHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHH
Q 040733 222 VLIDIPVDVQLE-LAVPN---WNQPCK--LPSCISSLPKEPDELAL-RQTLKLIVESKNPVLCVGGGCLNSSEELRKFVG 294 (643)
Q Consensus 222 V~i~iP~Dv~~~-~~~~~---~~~~~~--~p~~~~~~~~~~~~~~i-~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae 294 (643)
|||+||.|++.. ++... +..+.. .+.+.+.. ..+..+.+ ++++++|.+||||+|++|++..++.+++++|+|
T Consensus 164 V~i~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~A~rPvIl~G~~~~~a~~~l~~lae 242 (556)
T 3hww_A 164 VHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWL-REAPRLESEKQRDWFFWRQKRGVVVAGRMSAEEGKKVALWAQ 242 (556)
T ss_dssp EEEEEECCSCCSCCCSSTTHHHHHTTGGGGGCCSCSS-CCCCCCCCCCCTTHHHHTTSCEEEEECBCCHHHHHHHHHHHH
T ss_pred EEEeCCcCCCCCCCccccccccccccccccccccccc-cccccccchhhhhhhhccCCCeEEEECCCChHHHHHHHHHHH
Confidence 999999986543 12110 000000 00001000 00111112 245567889999999999876688899999999
Q ss_pred HhCCceeecC-CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccc-cccCCceEEEEcCCccc
Q 040733 295 LTGIPVTCTT-MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLE-DFATRAKIVHIDIDSNE 372 (643)
Q Consensus 295 ~lg~PV~tt~-~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~-~~~~~~~iI~Id~d~~~ 372 (643)
++|+||++|+ +++|.++++||+++| +..++++++++|+||+||+++++..+..|. .+. ..++||||+|+.+
T Consensus 243 ~~~~PV~~t~~~~~~~~~~~~~~~lg------~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~ 315 (556)
T 3hww_A 243 TLGWPLIGDVLSQTGQPLPCADLWLG------NAKATSELQQAQIVVQLGSSLTGKRLLQWQASCE-PEEYWIVDDIEGR 315 (556)
T ss_dssp HHTCCEEECTTTCSCCSSCCHHHHTT------SHHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCC-CSEEEEEESSCSC
T ss_pred hcCCEEEEccCCCCCCCcCcHHHHhc------CchhhhcccCCCEEEEcCCCcccHHHHHHHhcCC-CCeEEEECCCCcc
Confidence 9999999997 489999999998874 467889999999999999999776554332 343 3489999999999
Q ss_pred ccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCe
Q 040733 373 IGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEET 452 (643)
Q Consensus 373 i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~ 452 (643)
+++++++++.|++|++.+|++|.+. . ...+...|.+...+..... ....+++++.++++.|++.+++ |.
T Consensus 316 ~~~~~~~~~~i~~d~~~~l~~l~~~----~--~~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~-~~ 384 (556)
T 3hww_A 316 LDPAHHRGRRLIANIADWLELHPAE----K--RQPWCVEIPRLAEQAMQAV----IARRDAFGEAQLAHRICDYLPE-QG 384 (556)
T ss_dssp CCTTCCSEEEEESCHHHHHHHSCCC----C--CCCCCSSHHHHHHHHHHHH----HTTCCSSSHHHHHHTGGGTCCT-TC
T ss_pred CCCCCCceEEEEcCHHHHHHhcccc----c--chHHHHHHHHHHHHHHHHH----hhcccCcCHHHHHHHHHHhCCC-CC
Confidence 9999999999999999999886421 1 0111122222111111111 1124679999999999999999 88
Q ss_pred EEEeCCChhHHHHHHhccccCCCeEEec-CCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCe
Q 040733 453 IISTGVGQHQMWAIQFYMYKRARQLLTS-SGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPV 531 (643)
Q Consensus 453 iv~~d~G~~~~~~~~~~~~~~p~~~~~~-~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv 531 (643)
+|+.|.+....+...+...+...+++.+ +++|.||+ +|+|+|++++ ++++||+++|||||+|++|||+|++++++|+
T Consensus 385 iv~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a-~~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv 462 (556)
T 3hww_A 385 QLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA-SGKPTLAIVGDLSALYDLNALALLRQVSAPL 462 (556)
T ss_dssp EEEECSSHHHHHHHHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH-HCCCEEEEEEHHHHHHTGGGHHHHTTCSSCE
T ss_pred eEEEeCCcHHHHHHHhccCCCCceEEecCcccccccH-HHHHHHHHhc-CCCcEEEEEccHHhhhcchhhHhhcccCCCc
Confidence 8887777543222223223334456665 55788888 9999999999 7899999999999999999999999999999
Q ss_pred EEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 532 KILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 532 ~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
++||+||++|+|++.++....... ..+. ....+||.++|++||+++++|++.+||+++|+++++.+||+|||
T Consensus 463 ~ivv~NN~~~~~~~~~~~~~~~~~---~~~~-----~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~lie 534 (556)
T 3hww_A 463 VLIVVNNNGGQIFSLLPTPQSERE---RFYL-----MPQNVHFEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIE 534 (556)
T ss_dssp EEEEEESCC--------------------CC-----CCCCCCSHHHHHHTTCEEECCSSHHHHHHHHHHHTTSSSEEEEE
T ss_pred EEEEEECCCCCcccCCCCcchhHH---Hhcc-----CCCCCCHHHHHHHcCCcEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 999999999999876543211101 1111 13568999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccc
Q 040733 612 VMVSYQEHVVPM 623 (643)
Q Consensus 612 V~v~~~~~~~p~ 623 (643)
|+++++++..++
T Consensus 535 v~~~~~~~~~~l 546 (556)
T 3hww_A 535 MVVNDTDGAQTL 546 (556)
T ss_dssp EECCSSHHHHHH
T ss_pred EECCccccHHHH
Confidence 999998876543
No 19
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=100.00 E-value=8.1e-92 Score=794.06 Aligned_cols=521 Identities=18% Similarity=0.279 Sum_probs=440.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+|+++++|++.|+++||++|||+||+++++|+++|.+.+ |++|.+|||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 81 (563)
T 2vk8_A 3 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKG-MSCIITTFGVGELSA 81 (563)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHH
Confidence 479999999999999999999999999999999998875 999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCccccc----------CCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLL----------GTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~----------g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
++||++|+.+++|||+||||+++..+ |++++| ||.++++++|||++++.+++++++.+++||+.|.++
T Consensus 82 ~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 159 (563)
T 2vk8_A 82 LNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFT--VFHRMSANISETTAMITDIATAPAEIDRCIRTTYVT 159 (563)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSS--HHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchH--HHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998763 567888 589999999999999999999999999999999988
Q ss_pred CCCeEEEEcccchhhhccCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHH
Q 040733 218 RPGPVLIDIPVDVQLELAVPNW-NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVG 294 (643)
Q Consensus 218 ~~GPV~i~iP~Dv~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae 294 (643)
+ |||||+||.|++.+++.... ..+ .+.......+.++.+.+++++++|.+||||+|++|+|+. ++.+++++|+|
T Consensus 160 ~-GPV~l~iP~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae 236 (563)
T 2vk8_A 160 Q-RPVYLGLPANLVDLNVPAKLLQTP--IDMSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLID 236 (563)
T ss_dssp T-SCEEEEEETTGGGSEEEGGGGGSC--CCCSCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHH
T ss_pred C-CCEEEEechhhhcCccCCccCcCc--ccccCCCCCchhhHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHH
Confidence 6 99999999999876543210 001 111110000112345799999999999999999999986 67899999999
Q ss_pred HhCCceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccc
Q 040733 295 LTGIPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEI 373 (643)
Q Consensus 295 ~lg~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i 373 (643)
++|+||++|++|||.+|++||+++|++ |..++..++++++++|+||+||++++++.++.+..+.+++++||||+|+.++
T Consensus 237 ~~~~Pv~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 316 (563)
T 2vk8_A 237 LTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKI 316 (563)
T ss_dssp HHCCCEEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHTCSEEEEESCCCCTTTTTTTCCCCCCSCEEEECSSEEEE
T ss_pred HhCCCEEECcccCccCCCCCCcccccccCccCCHHHHHHHHhCCEEEEECCCCccccccccccCCCCCeEEEEeCCceEE
Confidence 999999999999999999999999985 8888999999999999999999999998887776555678999999999999
Q ss_pred cCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeE
Q 040733 374 GKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETI 453 (643)
Q Consensus 374 ~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~i 453 (643)
++++..++ +++.+|++|.+.+..... .|.+ +.+.+.++.........++++.++++.|++.+++ |.+
T Consensus 317 ~~~~~~~~----~~~~~l~~L~~~l~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~i 383 (563)
T 2vk8_A 317 RNATFPGV----QMKFVLQKLLTTIADAAK-------GYKP-VAVPARTPANAAVPASTPLKQEWMWNQLGNFLQE-GDV 383 (563)
T ss_dssp TTEEEETC----CHHHHHHHHHHHHHHHTT-------TCCC-CCCCCCCCCCCCCCTTCBCCHHHHHHHHTTTCCT-TCE
T ss_pred CCcccCCc----CHHHHHHHHHHhhccccc-------hhhh-hhhhhhcccccCCCCCCCcCHHHHHHHHHHhCCC-CCE
Confidence 99866555 458999999877654221 1211 0111111111111123569999999999999998 999
Q ss_pred EEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCC----CeEEEEecCccccCCHHHHHHHHHhCC
Q 040733 454 ISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPG----AIVVDIDGDGSFIMNLQELAAIKAENI 529 (643)
Q Consensus 454 v~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~----~~Vv~i~GDGsf~m~~~eL~Ta~~~~l 529 (643)
+++|+|++. |..+++..++++++++++++|+||+++|+|+|+++|.|+ ++||+++|||+|+|+++||+|++++++
T Consensus 384 v~~d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~~~el~ta~~~~l 462 (563)
T 2vk8_A 384 VIAETGTSA-FGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGL 462 (563)
T ss_dssp EEECTTHHH-HHGGGSCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHGGGHHHHHHTTC
T ss_pred EEECCchHH-HHHhhcCcCCCCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhccHHHHHHHHHcCC
Confidence 999999985 677888888899999999999999999999999999887 999999999999999999999999999
Q ss_pred CeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCC---EEEeCChhHHHHHHH-HHHhCC
Q 040733 530 PVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP---AARVTKKKDVRAAIQ-LMLETP 605 (643)
Q Consensus 530 pv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~---~~~V~~~~eL~~al~-~al~~~ 605 (643)
|+++||+||++|+|++.++.. ..... ....+||.++|++||++ +++|++.+||+++|+ ++++.+
T Consensus 463 ~~~ivv~nN~~~~~~~~~~~~----~~~~~--------~~~~~d~~~~a~a~G~~~~~~~~v~~~~el~~al~~~a~~~~ 530 (563)
T 2vk8_A 463 KPYLFVLNNDGYTIQKLIHGP----KAQYN--------EIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDN 530 (563)
T ss_dssp CCEEEEEESSSCHHHHHHSCT----TCGGG--------CCCCCCGGGHHHHTTCSSEEEEEECBHHHHHHHHTCTTTTSC
T ss_pred CcEEEEEECCcchhhhhhhCC----CCCcc--------cCCCCCHHHHHHHhCCCCCcEEEecCHHHHHHHHHHHHHhCC
Confidence 999999999999999864311 11111 12458999999999999 999999999999999 888754
Q ss_pred -CcEEEEEEeCCCCCcc
Q 040733 606 -GPYLLDVMVSYQEHVV 621 (643)
Q Consensus 606 -gp~lIeV~v~~~~~~~ 621 (643)
+|+||||++++++...
T Consensus 531 ~~p~liev~~~~~~~~~ 547 (563)
T 2vk8_A 531 SKIRMIEVMLPVFDAPQ 547 (563)
T ss_dssp SSEEEEEEECCTTCCCH
T ss_pred CCcEEEEEEeCccccCH
Confidence 7999999999887654
No 20
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=100.00 E-value=1.7e-90 Score=781.75 Aligned_cols=516 Identities=19% Similarity=0.250 Sum_probs=438.6
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++++|++.|+++||++|||+||+++++|+++|.+.+ |++|.++||++|+|||+||||+|| ++||++|+|||++|+
T Consensus 4 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~N~ 82 (552)
T 1ovm_A 4 PYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKG-FAALLTTFGVGELSA 82 (552)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHT
T ss_pred ccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHHHH
Confidence 579999999999999999999999999999999999875 999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCccccc----------CCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLL----------GTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~----------g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
++||++|+.+++|||+||||+|...+ |.+.+| ||.++++++|||++++.+ +++++.+++|++.|+++
T Consensus 83 ~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~~~ 159 (552)
T 1ovm_A 83 MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR--HFYHMSEPITVAQAVLTE-QNACYEIDRVLTTMLRE 159 (552)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCS--HHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHH--HHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHHhC
Confidence 99999999999999999999998764 445778 489999999999999999 99999999999999988
Q ss_pred CCCeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHH
Q 040733 218 RPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGL 295 (643)
Q Consensus 218 ~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~ 295 (643)
+ |||||+||.|++.+++... ...++...+...+.++.+.+++++++|.+||||+|++|+|+. ++.+++++|+|+
T Consensus 160 ~-GPV~l~iP~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~ 235 (552)
T 1ovm_A 160 R-RPGYLMLPADVAKKAATPP---VNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKE 235 (552)
T ss_dssp T-CCEEEEEEHHHHHSBCCCC---SSCCCCCCCCCCHHHHHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHH
T ss_pred C-CCEEEEeehhhccCccCCC---cccccccCCCCCccchHHHHHHHHHHHHhCCCCEEEECcCccccCHHHHHHHHHHH
Confidence 6 9999999999987654321 001111110000112356799999999999999999999986 678999999999
Q ss_pred hCCceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCccccc
Q 040733 296 TGIPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIG 374 (643)
Q Consensus 296 lg~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~ 374 (643)
+|+||++|++|||.+|++||+++|++ |..++..++++++++|+||+||++++++.++.+..+.++.++||||+|+.+++
T Consensus 236 ~~~Pv~~t~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 315 (552)
T 1ovm_A 236 VPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVG 315 (552)
T ss_dssp SCCEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSSEEEET
T ss_pred HCCCEEEccccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEECCCCCcccccccccCCCCCeEEEEeCChheeC
Confidence 99999999999999999999999995 88889999999999999999999999988877766666789999999999999
Q ss_pred CCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEE
Q 040733 375 KVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETII 454 (643)
Q Consensus 375 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv 454 (643)
+++..++ +++.+|++|.+ +.... . .|.+...+ +..........++++..+++.|++.+++ +.+|
T Consensus 316 ~~~~~~~----~~~~~l~~L~~-l~~~~---~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~iv 379 (552)
T 1ovm_A 316 DVWFTGI----PMNQAIETLVE-LCKQH---V----HAGLMSSS---SGAIPFPQPDGSLTQENFWRTLQTFIRP-GDII 379 (552)
T ss_dssp TEEEESC----CHHHHHHHHHH-HHHTS---C----CC-----------------CCSBCCHHHHHHHHHHHCCT-TCEE
T ss_pred CcccCCc----cHHHHHHHHHh-Ccccc---c----chhhhhhh---ccccccCCCCCccCHHHHHHHHHHhcCC-CCEE
Confidence 8766554 45899999987 65421 1 23221111 1111111123569999999999999998 9999
Q ss_pred EeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEE
Q 040733 455 STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKIL 534 (643)
Q Consensus 455 ~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 534 (643)
+.|+|++. |..++++.++++++++++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|+.++++|+++|
T Consensus 380 v~d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~iv 458 (552)
T 1ovm_A 380 LADQGTSA-FGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIIL 458 (552)
T ss_dssp EECTTHHH-HHHTTCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHHHHHHHTTHHHHHHHTTCCCEEE
T ss_pred EECCchHH-HHHHhcccCCCCeEEechhhHhhhhHHHHHHHHHHhCCCCcEEEEECchHHHhHHHHHHHHHHhCCCCEEE
Confidence 99999986 67888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCC----CEEEeCChhHHHHHHHHHHhCCCcEEE
Q 040733 535 LINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGI----PAARVTKKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 535 V~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~----~~~~V~~~~eL~~al~~al~~~gp~lI 610 (643)
|+||++|+|++.++ +...... ....+||.++|++||+ ++++|++.+||+++|+++++.+||+||
T Consensus 459 v~nN~~~~~~~~~~----~~~~~~~--------~~~~~d~~~~a~a~G~~~~~~~~~v~~~~~l~~al~~a~~~~gp~li 526 (552)
T 1ovm_A 459 VLNNEGYTVERAIH----GAEQRYN--------DIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLI 526 (552)
T ss_dssp EEESSSCHHHHHHS----CTTCGGG--------CCCCCCGGGSTTTSCSSCCEEEEEECBHHHHHHHHHHHTTCSSEEEE
T ss_pred EEECCCCeEEEeec----cCCCCcc--------cCCCCCHHHHHHHhCCCcCCCEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 99999999988642 1111111 1346899999999999 999999999999999999999999999
Q ss_pred EEEeCCCCCcc
Q 040733 611 DVMVSYQEHVV 621 (643)
Q Consensus 611 eV~v~~~~~~~ 621 (643)
||.+++++...
T Consensus 527 ev~~~~~~~~~ 537 (552)
T 1ovm_A 527 EVMLPKADIPP 537 (552)
T ss_dssp EEECCTTCCCH
T ss_pred EEEcCcccCCH
Confidence 99999887654
No 21
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=100.00 E-value=3.2e-90 Score=780.28 Aligned_cols=514 Identities=21% Similarity=0.290 Sum_probs=429.2
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+|+++++|++.|+++||++|||+||+++++|+++|.+.+ +++|.++||++|+|||+||||+||||+||++|+|||++|+
T Consensus 20 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG~~N~ 99 (565)
T 2nxw_A 20 HMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFNM 99 (565)
T ss_dssp CCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred CcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHH
Confidence 479999999999999999999999999999999998766 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCC-----CccC-HHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCe
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAF-----QEIP-VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGP 221 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~-----Q~~d-~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GP 221 (643)
++||++|+.+++|||+||||++....+++.+ |++| |.++|+++|||++++.+++++++.+++||+.|.++ +||
T Consensus 100 ~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~GP 178 (565)
T 2nxw_A 100 VNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQ-SRP 178 (565)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHH-TCC
T ss_pred HHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhC-CCC
Confidence 9999999999999999999999999988774 7788 99999999999999999999999999999999987 599
Q ss_pred EEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCc
Q 040733 222 VLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIP 299 (643)
Q Consensus 222 V~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~P 299 (643)
|||+||.|++.+++.+.. ..+. . ...+.+.++.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+|
T Consensus 179 V~l~iP~Dv~~~~~~~~~----~~~~-~-~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~P 252 (565)
T 2nxw_A 179 VYLEIPRNMVNAEVEPVG----DDPA-W-PVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVP 252 (565)
T ss_dssp EEEEEEGGGTTCBCCCCC----CCCC-C-CCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCSC
T ss_pred EEEECChhhhcCcCCCcc----ccCC-C-CCCchhhHHHHHHHHHHHHcCCCCEEEECCCcchhchHHHHHHHHHHhCCC
Confidence 999999999887654211 0111 0 000112346789999999999999999999886 5789999999999999
Q ss_pred eeecCCCCCCCCCCCCCcccc-cCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCC
Q 040733 300 VTCTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKL 378 (643)
Q Consensus 300 V~tt~~gkg~~~~~hpl~lG~-~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~ 378 (643)
|++|++|||.+|++||+++|+ .|..++..++++++++|+||+||+++.++.++.+....+..++||||+|+.++++++.
T Consensus 253 v~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~~~~~ 332 (565)
T 2nxw_A 253 VVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTLGYHTY 332 (565)
T ss_dssp EEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHHHHTCSEEEEESCCBCSSTTSBCTTTSCGGGEEEEETTEEEETTEEE
T ss_pred EEECcccCccCCCCCCccccccCcccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCCceeeCCccc
Confidence 999999999999999999998 5888999999999999999999999988877665443345689999999999998755
Q ss_pred CCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCC--CCeEEEe
Q 040733 379 PDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDD--EETIIST 456 (643)
Q Consensus 379 ~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~--~d~iv~~ 456 (643)
.++.+ ..+|++|.+.+.... ..|.+. .+ + .++........++++..+++.|++.+++ ++.++++
T Consensus 333 ~~~~~----~~~l~~L~~~l~~~~-------~~w~~~-~~-~-~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~~~iv~~~ 398 (565)
T 2nxw_A 333 ADIPL----AGLVDALLERLPPSD-------RTTRGK-EP-H-AYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAA 398 (565)
T ss_dssp ESCCH----HHHHHHHHHTSCCCC-------CCCCCS-CS-S-CCCCCCCCSSSBCCHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCccH----HHHHHHHHHhccccc-------hhhhhh-hh-h-hccccccCCCCccCHHHHHHHHHHhcccccCCEEEEe
Confidence 55444 678888876543211 123211 00 0 1111111123569999999999999975 3444489
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++. |..+++ .+++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|++|||+
T Consensus 399 d~G~~~-~~~~~~---~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~i~GDG~~~~~~~~l~ta~~~~l~~~ivv~ 474 (565)
T 2nxw_A 399 DMGDCL-FTAMDM---IDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNCRRLGIDPIVILF 474 (565)
T ss_dssp CSSHHH-HHHTTS---CCSCEECCTTTCCTTCHHHHHHHHHHHTTTCCEEEEEEHHHHHHHGGGGGGHHHHTCCCEEEEE
T ss_pred cchHHH-HHHHhC---CCcEEEccCccccccccchHHHHHHHhCCCCcEEEEEechHHHhhHHHHHHHHHhCCCCEEEEE
Confidence 999986 554444 6788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcE-EEEEEeC
Q 040733 537 NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPY-LLDVMVS 615 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~-lIeV~v~ 615 (643)
||++|+|++++|... . .. ....+||.++|++||+++++|++.+||+++|+++++.+||. ||||.++
T Consensus 475 nN~~~~~~~~~~~~~---~--~~--------~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~~liev~~~ 541 (565)
T 2nxw_A 475 NNASWEMLRTFQPES---A--FN--------DLDDWRFADMAAGMGGDGVRVRTRAELKAALDKAFATRGRFQLIEAMIP 541 (565)
T ss_dssp ECSBCHHHHHHCTTC---G--GG--------BCCCCCHHHHTGGGTSEEEEECBHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred ECCCCcEEeeecccC---C--CC--------cCCCCCHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 999999998764210 0 11 12468999999999999999999999999999999888988 9999999
Q ss_pred CCCCc
Q 040733 616 YQEHV 620 (643)
Q Consensus 616 ~~~~~ 620 (643)
+++..
T Consensus 542 ~~~~~ 546 (565)
T 2nxw_A 542 RGVLS 546 (565)
T ss_dssp TTCCC
T ss_pred cccCC
Confidence 87653
No 22
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=100.00 E-value=6e-88 Score=763.21 Aligned_cols=515 Identities=18% Similarity=0.298 Sum_probs=435.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++|+|++.|+++||++|||+||+++++|+++|.+.+ |++|.++||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 24 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~ 102 (570)
T 2vbf_A 24 MYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELSA 102 (570)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHH
Confidence 479999999999999999999999999999999998875 999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCC--CC-----cc-CHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDA--FQ-----EI-PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~--~Q-----~~-d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
++||++|+.+++|||+||||++...++++. +| +. +|..+++++|||++++.+ ++++..+++|++.|.++|
T Consensus 103 ~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~- 180 (570)
T 2vbf_A 103 INGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKER- 180 (570)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCC-
Confidence 999999999999999999999987765443 22 12 488999999999999999 999999999999999986
Q ss_pred CeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhC
Q 040733 220 GPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTG 297 (643)
Q Consensus 220 GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg 297 (643)
|||||+||.|++.+++.... . .++.......+.+ .+.+++++++|.+||||+|++|+|+. ++.+++++|+|++|
T Consensus 181 GPV~l~iP~d~~~~~~~~~~-~--~~~~~~~~~~~~~-~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~ 256 (570)
T 2vbf_A 181 KPVYINLPVDVAAAKAEKPA-L--SLEKESSTTNTTE-QVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETK 256 (570)
T ss_dssp CCEEEEEEHHHHTSBCCCCS-S--CCC------CHHH-HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHC
T ss_pred CCEEEEcchhhhcCcccCCc-c--cccccCCCCCccH-HHHHHHHHHHHHcCCCCEEEECcCccccChHHHHHHHHHHHC
Confidence 99999999999876553210 0 1110010000011 56799999999999999999999987 67899999999999
Q ss_pred CceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCC
Q 040733 298 IPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKV 376 (643)
Q Consensus 298 ~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~ 376 (643)
+||++|++|||.+|++||+++|++ |..++..++++++++|+||+||+++.++.++.|..+.++.++||||+|+.+++++
T Consensus 257 ~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 336 (570)
T 2vbf_A 257 LPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFTHHLDENKMISLNIDEGIIFNK 336 (570)
T ss_dssp CCEEECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEESCCCCGGGTTTTCCCCCGGGEEEECSSCEEETTE
T ss_pred CCEEECcccCccCCCCCcCccCCcCCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCeEEEEeCCHHHhCCe
Confidence 999999999999999999999985 8888899999999999999999999988887666555678999999999999987
Q ss_pred CCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEe
Q 040733 377 KLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIST 456 (643)
Q Consensus 377 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~ 456 (643)
+..++ |++.+|++|.+.+... . |. +.. +++.... .....++++..+++.|++.+++ |.+|+.
T Consensus 337 ~~~~~----~~~~~l~~L~~~l~~~-----~----~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~-~~iv~~ 398 (570)
T 2vbf_A 337 VVEDF----DFRAVVSSLSELKGIE-----Y----EG--QYI-DKQYEEF-IPSSAPLSQDRLWQAVESLTQS-NETIVA 398 (570)
T ss_dssp EECSS----CHHHHHHTGGGCCSCC-----C----CS--CCC-CCCCCCC-CCCSSBCCHHHHHHHHHHHCCS-SEEEEE
T ss_pred eecCC----CHHHHHHHHHHhcccc-----c----cc--cch-hhhcccc-CCCCCCcCHHHHHHHHHHhcCC-CCEEEE
Confidence 66544 6899998887654321 0 21 000 0011111 1123569999999999999998 999999
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++. |..+++..+.++++++++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 399 d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~ivv~ 477 (570)
T 2vbf_A 399 EQGTSF-FGASTIFLKSNSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFII 477 (570)
T ss_dssp CTTHHH-HHHTTSCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEE
T ss_pred eCCHHH-HHHHhcccCCCCeEecCccchhhhhhHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCCCCEEEEE
Confidence 999986 5677788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCC-----EEEeCChhHHHHHHHH-HHhCCCcEEE
Q 040733 537 NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP-----AARVTKKKDVRAAIQL-MLETPGPYLL 610 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~-----~~~V~~~~eL~~al~~-al~~~gp~lI 610 (643)
||++|+|++.++.. +.... ....+||.++|++||++ +++|++.+||+++|++ +++.+||+||
T Consensus 478 nN~~~~~~~~~~~~----~~~~~--------~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~~~~~p~li 545 (570)
T 2vbf_A 478 NNDGYTVEREIHGP----TQSYN--------DIPMWNYSKLPETFGATEDRVVSKIVRTENEFVSVMKEAQADVNRMYWI 545 (570)
T ss_dssp ESSSCHHHHHHSCT----TCGGG--------CCCCCCGGGHHHHTTCCTTTEEEEEECBHHHHHHHHHHHHHCTTSEEEE
T ss_pred ECCchHHHHHHhcc----CCCcc--------CCCCCCHHHHHHHcCCCcCCcceEEecCHHHHHHHHHHHHhcCCCcEEE
Confidence 99999999865311 11011 13468999999999998 8999999999999998 4778999999
Q ss_pred EEEeCCCCCcc
Q 040733 611 DVMVSYQEHVV 621 (643)
Q Consensus 611 eV~v~~~~~~~ 621 (643)
||.+++++...
T Consensus 546 ev~~~~~~~~~ 556 (570)
T 2vbf_A 546 ELVLEKEDAPK 556 (570)
T ss_dssp EEECCTTCCCH
T ss_pred EEEcCcccccH
Confidence 99999887543
No 23
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.86 E-value=8.6e-22 Score=236.12 Aligned_cols=185 Identities=15% Similarity=0.186 Sum_probs=149.1
Q ss_pred CCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhcc----ccCCC---eEEecC--CCcccccchHH---------
Q 040733 431 GEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYM----YKRAR---QLLTSS--GFGSMGFGLPA--------- 492 (643)
Q Consensus 431 ~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~----~~~p~---~~~~~~--~~g~mG~glpa--------- 492 (643)
+..|.+..+++.|.+++++ +.+|+.|+|++.+|+.+++. .+.++ .|..|. +.|.||+|+|+
T Consensus 811 C~GCge~~~ik~l~ql~g~-~~iian~tGc~siw~~~~~~~~~~~~~~g~~p~~~~Slf~~~a~mG~G~~~~~~~~~~~~ 889 (1231)
T 2c42_A 811 CSGCGETPYVRVITQLFGE-RMFIANATGCSSIWGASAPSMPYKTNRLGQGPAWGNSLFEDAAEYGFGMNMSMFARRTHL 889 (1231)
T ss_dssp CTTCSSHHHHHHHHHHHGG-GEEEEECSSHHHHHHHBTTCCCBCCCTTSCCCEEECCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHhcCC-CeEEEecCchHHHHHhhcccCCcccccCCCCcceecccCcchHHHHHHHHHHHHHHHHHH
Confidence 4557788999999999998 99999999999999999853 32333 788773 67999999999
Q ss_pred ------------------HH--------------------HHHHhCCC----------------CeEEEEecCc-cccCC
Q 040733 493 ------------------AM--------------------GAAVANPG----------------AIVVDIDGDG-SFIMN 517 (643)
Q Consensus 493 ------------------Ai--------------------GaalA~p~----------------~~Vv~i~GDG-sf~m~ 517 (643)
|| |++++.|+ ++||+|+||| +|+|+
T Consensus 890 ~~~~~~~~~~~~~~~~~~Ai~~w~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~Vv~i~GDG~~~~mg 969 (1231)
T 2c42_A 890 ADLAAKALESDASGDVKEALQGWLAGKNDPIKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAYDIG 969 (1231)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTCCSHHHHHHHTTGGGTSCCEEEEEEEHHHHHTTT
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCchHHHHHhhhhhhccCCcEEEEeCcHHHHHcc
Confidence 99 99998544 7899999999 99999
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE---e-CChhH
Q 040733 518 LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR---V-TKKKD 593 (643)
Q Consensus 518 ~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~---V-~~~~e 593 (643)
+|||.|++++++|+++||+||+.|||++. |...+......+.+ .+.......+||.++|++||+.+++ + ++++|
T Consensus 970 ~~eL~ta~~~~~~v~iiVlnN~~yg~tg~-Q~s~~t~~~~~t~~-~~~g~~~~~~D~~~iA~a~G~~~va~~~v~~~~~~ 1047 (1231)
T 2c42_A 970 YGGLDHVLASGEDVNVFVMDTEVYSNTGG-QSSKATPTGAVAKF-AAAGKRTGKKDLARMVMTYGYVYVATVSMGYSKQQ 1047 (1231)
T ss_dssp HHHHHHHHHTTCSCEEEEEECSSBTTTTC-BCCTTSCTTCCBBT-BTTCCSSCCCCHHHHHHTTSSSEEEEECTTTCHHH
T ss_pred hHHHHHHHHhCCCeEEEEEECHHHHhHHh-hhccCCCCCceeee-cccCCCCCchhHHHHHHHCCCCEEEEEeccCCHHH
Confidence 99999999999999999999999999984 33222111111111 0111123458999999999999985 3 58999
Q ss_pred HHHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 594 VRAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 594 L~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
|.++|++|++.+||+||||.++...
T Consensus 1048 l~~al~eAl~~~GP~lI~v~~~c~~ 1072 (1231)
T 2c42_A 1048 FLKVLKEAESFPGPSLVIAYATCIN 1072 (1231)
T ss_dssp HHHHHHHHHHSSSCEEEEEECCCGG
T ss_pred HHHHHHHHHhcCCCEEEEEeecCcc
Confidence 9999999999999999999997653
No 24
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=99.80 E-value=4.5e-21 Score=181.63 Aligned_cols=135 Identities=17% Similarity=0.282 Sum_probs=110.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCCCCC--Cc--ccccCCCCcHHHH
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDE--LC--LRMVGMFGTVYAN 330 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hp--l~--lG~~g~~~~~~~~ 330 (643)
+...+++++++|++||||+|++|+|+. ++.+++++|+|++|+||++|++|||+||++|| ++ +|++|..++..++
T Consensus 20 ~~~~v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~ 99 (170)
T 3cf4_G 20 KAVSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKW 99 (170)
T ss_dssp EECCHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhh
Confidence 445599999999999999999999986 67889999999999999999999999999999 99 9998888877778
Q ss_pred ---HhhhcCCEEEEecCcc--CccccCccccccCCceEEEEcCCcccccCCCCCCeeEe---cCHHHHHHHHHHHHh
Q 040733 331 ---YAVNECDLLLAAGVRF--NERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC---ADAKLVFNRMNMILE 399 (643)
Q Consensus 331 ---~~l~~aDlvL~vG~~~--~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~---~D~~~~L~~L~~~l~ 399 (643)
+++++||+||++|+++ +++.++.+..|.+ .++|+| ++++.+++... -..+++|+.|.+.+.
T Consensus 100 ~~~~~~~~aDlvl~iG~~~~~~~~~t~~~~~~~~-~~iI~i-------~~~~~~~~~~~~~~l~~~~~l~~L~~~~~ 168 (170)
T 3cf4_G 100 PGLDGNGNYDMIITIGFKKFYINQVLSAAKNFSN-LKTIAI-------ERGYIQNATMSFGNLSKADHYAALDELIN 168 (170)
T ss_dssp CCSSSSCCCSEEEEESCCHHHHHHHHHHHHHHCC-CCEEEC-------SSSCCTTSSEECCCCCHHHHHHHHHHHHH
T ss_pred hHHHHhhcCCEEEEECCccCccccccccccccCC-CeEEEE-------CCCcccchhhhhccCCHHHHHHHHHHHHh
Confidence 8899999999999999 8888877666666 788844 45554443332 145777777766543
No 25
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=99.72 E-value=3.1e-20 Score=174.87 Aligned_cols=131 Identities=22% Similarity=0.307 Sum_probs=99.4
Q ss_pred HHHH-HHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCC-CC-CCcccccCCCCcHHHHHhh--
Q 040733 261 LRQT-LKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPC-TD-ELCLRMVGMFGTVYANYAV-- 333 (643)
Q Consensus 261 i~~~-~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~-~h-pl~lG~~g~~~~~~~~~~l-- 333 (643)
++++ +++|++||||+|++|+ +. ++.+++++|+|+ ++||++|++|+|.||+ +| |++.+ +|++ ...+...
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~-~G~~--~~g~~~~~~ 98 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNY-AVLH--ELTQFLLDP 98 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEE-ECHH--HHHHHHHST
T ss_pred HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCccccc-cccH--HHHHHhhhh
Confidence 7888 9999999999999999 87 678899999999 9999999999999999 99 84433 2321 1234433
Q ss_pred --------hcCCEEEEecCccC--ccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCC
Q 040733 334 --------NECDLLLAAGVRFN--ERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGV 403 (643)
Q Consensus 334 --------~~aDlvL~vG~~~~--~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~ 403 (643)
++|||||++|+||+ ++.++++..|.+++++|||| ++++++ ++.+|++|.
T Consensus 99 ~~~~~~~~~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Id-------k~~~~d------a~~~l~~L~-------- 157 (174)
T 1ytl_A 99 DWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAID-------RYYHPN------ADMSFGNLW-------- 157 (174)
T ss_dssp TCCCTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECS-------SSCCTT------SSEECCCCG--------
T ss_pred hhhhhcccCCCCEEEEECCcCCccccccccccccCCCCeEEEeC-------CCcCCC------HHHHHHHHH--------
Confidence 89999999999997 55566777777788999974 666664 344454443
Q ss_pred CCCCChhHHHHHHHHHH
Q 040733 404 GFMFDFSAWREELHEQK 420 (643)
Q Consensus 404 ~~~~~~~~w~~~~~~~~ 420 (643)
....+|.+++.+..
T Consensus 158 ---~~~~~w~~~l~~~~ 171 (174)
T 1ytl_A 158 ---KKEEDYLKLLDEIL 171 (174)
T ss_dssp ---GGHHHHHHHHHHHH
T ss_pred ---hchHHHHHHHHHHH
Confidence 12357887776654
No 26
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.66 E-value=9.7e-17 Score=171.93 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=125.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhh----CCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR----SNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~----~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
.|+|++++++.+.+.|++++|||||+.+.++++.|.+ .+++++.++||.+|+.||.|++++++| +++.|+|||+
T Consensus 22 ~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r--~~~~ts~~G~ 99 (395)
T 1yd7_A 22 FIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK--AMTATSGPGF 99 (395)
T ss_dssp EEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC--EEEEEETTHH
T ss_pred EeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc--EEEEeCchHH
Confidence 4799999999999999999999999999999999865 459999999999999999999999998 5557999999
Q ss_pred HHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCcc-CHHHH--hh--ccceeeeEeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 145 TNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEI-PVVEV--TR--YMTKHNYLVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 145 ~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~-d~~~~--~~--~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
++++.+|..+...++|+++++++++....+...+++. |.... .. ++.++...+.+++++..++..||++|...+
T Consensus 100 ~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~~- 178 (395)
T 1yd7_A 100 SLMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYR- 178 (395)
T ss_dssp HHHTTTCC----CCCCEEEEEEC--------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHHC-
Confidence 9999999999999999999999988665443343333 22222 22 457888889999999999999999999876
Q ss_pred CeEEEEcccchhh
Q 040733 220 GPVLIDIPVDVQL 232 (643)
Q Consensus 220 GPV~i~iP~Dv~~ 232 (643)
.||.+.+|.++..
T Consensus 179 ~PVi~~~~~~l~h 191 (395)
T 1yd7_A 179 TPVILLTDAEVGH 191 (395)
T ss_dssp SEEEEEECHHHHH
T ss_pred CCEEEEcchhHhC
Confidence 9999999998754
No 27
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.64 E-value=2.9e-16 Score=166.06 Aligned_cols=120 Identities=21% Similarity=0.259 Sum_probs=99.9
Q ss_pred cCCCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC-H-HHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 480 SSGFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN-L-QELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 480 ~~~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
.++.|+||+++|.|+|+++|. +++.||+++|||+|++. + .+|.+|.++++|+++||.||+ |++...
T Consensus 138 ~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~------- 209 (368)
T 1w85_A 138 LPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR-FAISTP------- 209 (368)
T ss_dssp CCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECS-EETTEE-------
T ss_pred CCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCC-ccceec-------
Confidence 346699999999999999986 48899999999999985 3 469999999999888888884 887420
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh----CCCcEEEEEEeCCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE----TPGPYLLDVMVSYQE 618 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~----~~gp~lIeV~v~~~~ 618 (643)
. .. ....+||.++|++||+++++|+ +++++.+++++|++ .+||+||||.+.+..
T Consensus 210 --~-~~--------~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~ 269 (368)
T 1w85_A 210 --V-EK--------QTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYG 269 (368)
T ss_dssp --G-GG--------TCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSS
T ss_pred --c-cc--------ccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccC
Confidence 0 01 1235799999999999999997 78999999999886 689999999998754
No 28
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.64 E-value=3.3e-16 Score=166.13 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=90.6
Q ss_pred cccccchHHHHHH----HHhCCCCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccccc
Q 040733 484 GSMGFGLPAAMGA----AVANPGAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRA 557 (643)
Q Consensus 484 g~mG~glpaAiGa----alA~p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~ 557 (643)
|.+|.++|.|+|+ +++.++++||+++|||+|+++ ++| |.+|.++++|+++||.||+ |+|......
T Consensus 144 g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~~~~-------- 214 (367)
T 1umd_A 144 SPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNF-YAISVDYRH-------- 214 (367)
T ss_dssp SSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECS-EETTEEHHH--------
T ss_pred chhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCC-eeeccChhh--------
Confidence 5555555555554 455788999999999999999 999 9999999999888888888 998531110
Q ss_pred ccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHH------HHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 558 NSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV------RAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 558 ~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL------~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
. ...+||.++|++||+++++|+..+.+ +.+++++.+.+||+||||.+.+..
T Consensus 215 --~--------~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~ 271 (367)
T 1umd_A 215 --Q--------THSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYG 271 (367)
T ss_dssp --H--------CSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCS
T ss_pred --c--------cCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCC
Confidence 0 13479999999999999999876665 556666666789999999998754
No 29
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.62 E-value=4.8e-16 Score=166.18 Aligned_cols=116 Identities=18% Similarity=0.162 Sum_probs=98.7
Q ss_pred CCcccccchHHHHHHHHhCC----CCeEEEEecCccccCCH--HHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccc
Q 040733 482 GFGSMGFGLPAAMGAAVANP----GAIVVDIDGDGSFIMNL--QELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEAN 555 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p----~~~Vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 555 (643)
+.|+||+++|.|+|+++|.+ ++.||+++|||+|+|+. ++|.+|.++++|+++||.|| +|++....
T Consensus 160 ~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN-~~~i~~~~-------- 230 (400)
T 2bfd_A 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNN-GYAISTPT-------- 230 (400)
T ss_dssp CCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEG--------
T ss_pred cCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECC-ceeeeecc--------
Confidence 45999999999999999976 89999999999999987 89999999999988888888 78875310
Q ss_pred ccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh----CCCcEEEEEEeCC
Q 040733 556 RANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE----TPGPYLLDVMVSY 616 (643)
Q Consensus 556 ~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~----~~gp~lIeV~v~~ 616 (643)
.. ....+||.++|++||+++++|+ +++++.+++++|++ .++|+|||+++.+
T Consensus 231 --~~--------~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR 287 (400)
T 2bfd_A 231 --SE--------QYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYR 287 (400)
T ss_dssp --GG--------TCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred --cc--------cCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 00 0234799999999999999997 67899999988875 6899999999965
No 30
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.62 E-value=3.3e-16 Score=177.86 Aligned_cols=138 Identities=17% Similarity=0.244 Sum_probs=96.9
Q ss_pred cCCCcccccchHHHHHHHHh----CCCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHH-----
Q 040733 480 SSGFGSMGFGLPAAMGAAVA----NPGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVEYE----- 548 (643)
Q Consensus 480 ~~~~g~mG~glpaAiGaalA----~p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q----- 548 (643)
..+.|+||+++|+|+|+++| .++++||+++|||+|+ |+.++|.||.++++|++ +|+|||+|+|....+
T Consensus 119 ~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli-~IvnnN~~~i~~~~~~~~~~ 197 (629)
T 2o1x_A 119 AITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKML-IVLNDNEMSISENVGAMNKF 197 (629)
T ss_dssp CSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEE-EEEEECSBSSSBCCSSHHHH
T ss_pred CcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEE-EEEECCCCCCCCChhHHHHH
Confidence 45679999999999999999 5899999999999999 77899999999999975 556777898753221
Q ss_pred --HHhhccccccc---------ccCCCCCC-CCCCCCHH---------HHHhHCCCCEE-EeC--ChhHHHHHHHHHHhC
Q 040733 549 --DRYFEANRANS---------FLGDPLRK-SEIFPDML---------KFAEACGIPAA-RVT--KKKDVRAAIQLMLET 604 (643)
Q Consensus 549 --~~~~~~~~~~~---------~~g~p~~~-~~~~~d~~---------~lA~a~G~~~~-~V~--~~~eL~~al~~al~~ 604 (643)
...+...+... .+|.|... .....||. +++++||++++ +|+ +.++|.++|+++.+.
T Consensus 198 ~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~ 277 (629)
T 2o1x_A 198 MRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDL 277 (629)
T ss_dssp C---------------------------------------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTTS
T ss_pred HHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHhc
Confidence 10011000000 01110000 00011432 89999999998 885 999999999999988
Q ss_pred CCcEEEEEEeCCCC
Q 040733 605 PGPYLLDVMVSYQE 618 (643)
Q Consensus 605 ~gp~lIeV~v~~~~ 618 (643)
++|+||||.+.+..
T Consensus 278 ~~P~lI~v~t~kg~ 291 (629)
T 2o1x_A 278 DGPTILHIVTTKGK 291 (629)
T ss_dssp SSEEEEEEECCTTT
T ss_pred CCCEEEEEEEecCC
Confidence 99999999998754
No 31
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.60 E-value=1.1e-15 Score=163.36 Aligned_cols=119 Identities=21% Similarity=0.159 Sum_probs=95.9
Q ss_pred CCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccc
Q 040733 482 GFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEAN 555 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 555 (643)
+.|+||+++|.|+|+++|. +++.||+++|||+|++. .++|.+|.++++|+++|| |||+|++....
T Consensus 179 ~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv-~NN~~gi~~~~-------- 249 (407)
T 1qs0_A 179 ISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNV-VNNQWAISTFQ-------- 249 (407)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEE-EECSEETTEEG--------
T ss_pred cccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEE-ECCCcceeecc--------
Confidence 4699999999999999984 58999999999999986 567999999999955555 55578875310
Q ss_pred ccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh----CCCcEEEEEEeCCCC
Q 040733 556 RANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE----TPGPYLLDVMVSYQE 618 (643)
Q Consensus 556 ~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~----~~gp~lIeV~v~~~~ 618 (643)
.... ...+||.++|++||+++++|+ +++++.+++++|++ .+||+|||+.+.+..
T Consensus 250 --~~~~-------~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 309 (407)
T 1qs0_A 250 --AIAG-------GESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAG 309 (407)
T ss_dssp --GGGT-------TTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCS
T ss_pred --cccc-------CCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccC
Confidence 0100 135799999999999999997 57788888888875 689999999998765
No 32
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.57 E-value=1.6e-15 Score=170.79 Aligned_cols=119 Identities=15% Similarity=0.239 Sum_probs=104.4
Q ss_pred CcccccchHHHHHHHHhCC-----------CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHH
Q 040733 483 FGSMGFGLPAAMGAAVANP-----------GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVEYED 549 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p-----------~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~ 549 (643)
.|+||+++|+|+|+++|.+ +++|++++|||+|+ |+.++|.+|.++++|.+|+|+|||+|+|....+
T Consensus 113 tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~- 191 (632)
T 3l84_A 113 TGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVG- 191 (632)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGG-
T ss_pred CcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccchh-
Confidence 4899999999999999986 89999999999999 788999999999999999999999998753211
Q ss_pred HhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 550 ~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
. ....|+.+++++||+++++|+ +.++|.++|+++.+.++|+||+|.+......
T Consensus 192 ---------~---------~~~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~~~~~P~lI~v~T~kG~G~ 246 (632)
T 3l84_A 192 ---------L---------AFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKTTIAKGA 246 (632)
T ss_dssp ---------G---------TCCCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHHTCSSCEEEEEECCTTTTC
T ss_pred ---------h---------hcChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHHhCCCCEEEEEeeEeeecC
Confidence 0 124799999999999999995 8999999999999999999999999876533
No 33
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.56 E-value=3.2e-15 Score=169.35 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=100.5
Q ss_pred CCcccccchHHHHHHHHhCC--------------CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 482 GFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
..|+||+++|+|+|+|+|.+ +++|++++|||+++ |+.++|.+|.++++|.+|+|+|||+|+|..
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~ 193 (663)
T 3kom_A 114 TTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDG 193 (663)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----
T ss_pred CCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCccccc
Confidence 45899999999999999976 78999999999999 678899999999999999999999998754
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-EeC--ChhHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-RVT--KKKDVRAAIQLMLE-TPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V~--~~~eL~~al~~al~-~~gp~lIeV~v~~~~~~ 620 (643)
..+. ....|+.+++++||++++ +|+ +.++|.++|+++.+ .++|+||+|.+.+....
T Consensus 194 ~~~~-------------------~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI~~~T~kg~G~ 253 (663)
T 3kom_A 194 DTKG-------------------WFSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQQQKPTLICCKTVIGFGS 253 (663)
T ss_dssp CGGG-------------------TCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEEEEECCTTTTC
T ss_pred chhh-------------------hcchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEEeccccccc
Confidence 2210 124799999999999999 885 89999999999998 69999999999876533
No 34
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.56 E-value=6.9e-15 Score=155.09 Aligned_cols=117 Identities=24% Similarity=0.317 Sum_probs=94.9
Q ss_pred CCCcccccchHHHHHHHHhCC----CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 481 SGFGSMGFGLPAAMGAAVANP----GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~p----~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
++.|+||+++|.|+|+++|.+ ++.||+++|||++++. ..+|.+|..+++|+++||.|| +|+|.......
T Consensus 137 ~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN-~~g~~t~~~~~---- 211 (365)
T 2ozl_A 137 GGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN-RYGMGTSVERA---- 211 (365)
T ss_dssp CCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEHHHH----
T ss_pred CCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECC-CcccCCCcccc----
Confidence 455899999999999999974 8899999999999985 457999999999988777666 68885321110
Q ss_pred cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh----CCCcEEEEEEeCCCC
Q 040733 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE----TPGPYLLDVMVSYQE 618 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~----~~gp~lIeV~v~~~~ 618 (643)
...+||.+ ++||+++++|+ +++++.+++++|++ .+||+|||+.+.+..
T Consensus 212 --------------~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~ 265 (365)
T 2ozl_A 212 --------------AASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYH 265 (365)
T ss_dssp --------------CSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSS
T ss_pred --------------cCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCC
Confidence 12357776 79999999997 78999999988874 689999999998653
No 35
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.56 E-value=1.8e-14 Score=163.50 Aligned_cols=138 Identities=15% Similarity=0.190 Sum_probs=92.5
Q ss_pred CCcccccchHHHHHHHHhC----CCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHH--hhc
Q 040733 482 GFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDR--YFE 553 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~--~~~ 553 (643)
+.|+||+++|+|+|+++|. ++++||+++|||+|+ |+.++|.||.++++|+++ |+|||+|++....+.. .+.
T Consensus 119 ~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~-vvnnN~~~i~~~~~~~~~~~~ 197 (621)
T 2o1s_A 119 SVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLV-ILNDNEMSISENVGALNNHLA 197 (621)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEE-EEEECC---------------
T ss_pred CCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEE-EEeCCCcccCCCcchHHHHHH
Confidence 4699999999999999984 789999999999999 567899999999999865 5677799998765431 110
Q ss_pred -----cccc-----cc-ccC-CCC--CCCCCCCCH-------HHHHhHCCCCEE-Ee--CChhHHHHHHHHHHhCCCcEE
Q 040733 554 -----ANRA-----NS-FLG-DPL--RKSEIFPDM-------LKFAEACGIPAA-RV--TKKKDVRAAIQLMLETPGPYL 609 (643)
Q Consensus 554 -----~~~~-----~~-~~g-~p~--~~~~~~~d~-------~~lA~a~G~~~~-~V--~~~~eL~~al~~al~~~gp~l 609 (643)
..+. .. ... .|. .......|| .+++++||++++ +| ++.++|.++++++.+.++|+|
T Consensus 198 ~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~~gP~l 277 (621)
T 2o1s_A 198 QLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQF 277 (621)
T ss_dssp -----------------------------------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHSCSEEE
T ss_pred hhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 0000 00 000 000 000001244 689999999998 77 589999999999999999999
Q ss_pred EEEEeCCCCCc
Q 040733 610 LDVMVSYQEHV 620 (643)
Q Consensus 610 IeV~v~~~~~~ 620 (643)
|||.+.+....
T Consensus 278 I~v~t~kg~G~ 288 (621)
T 2o1s_A 278 LHIMTKKGRGY 288 (621)
T ss_dssp EEEECCCTTCC
T ss_pred EEEEEecccCC
Confidence 99999876533
No 36
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.56 E-value=2e-15 Score=171.64 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=100.2
Q ss_pred CCcccccchHHHHHHHHhCC--------------CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 482 GFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
..|+||+++|+|+|+|+|.+ +++|++|+|||+|+ |+.++|.+|.++++|.+|+|+|||+|+|..
T Consensus 153 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~ 232 (711)
T 3uk1_A 153 TTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDG 232 (711)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTE
T ss_pred CccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCccccc
Confidence 35899999999999999976 78999999999999 678899999999999999999999998753
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE-e--CChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-V--TKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~-V--~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
..+. ....||.+++++||+++++ | .+.++|.++|+++.+.++|+||+|.+.+...
T Consensus 233 ~~~~-------------------~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~~~~P~lI~v~T~kG~G 290 (711)
T 3uk1_A 233 DVVN-------------------WFHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKRSDKPSLICCKTRIGNG 290 (711)
T ss_dssp EGGG-------------------TCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTTCSSCEEEEEEC-----
T ss_pred chhh-------------------hcCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEccccccC
Confidence 2110 1247999999999999998 6 4899999999999988999999999977654
No 37
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.54 E-value=5.8e-15 Score=167.54 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=104.8
Q ss_pred CCcccccchHHHHHHHHhCC--------------CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 482 GFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
..|+||+++|+|+|+|+|.+ +++|++++|||+++ |+.++|.+|.++++|.+|+|+|||+|+|..
T Consensus 138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~ 217 (690)
T 3m49_A 138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDG 217 (690)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSS
T ss_pred CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeeccc
Confidence 45899999999999999976 88999999999999 578999999999999999999999998753
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLE-TPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~-~~gp~lIeV~v~~~~~~ 620 (643)
..+ . ....|+.+++++||+++++| ++.++|.++|+++.+ .++|+||+|.+......
T Consensus 218 ~~~----------~---------~~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~v~T~kG~G~ 277 (690)
T 3m49_A 218 DLN----------R---------SFSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIGFGS 277 (690)
T ss_dssp BGG----------G---------TCCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTC
T ss_pred chh----------h---------ccchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEEEEeeccccc
Confidence 221 0 13479999999999999999 789999999999998 79999999999877543
No 38
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.53 E-value=5.2e-15 Score=168.22 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=103.3
Q ss_pred CCCcccccchHHHHHHHHhC--------------CCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhh
Q 040733 481 SGFGSMGFGLPAAMGAAVAN--------------PGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMN 544 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~--------------p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 544 (643)
...|+||+++|+|+|+|+|. ++++|++++|||+++ |+.++|.+|.++++|.+|+|+|||+|+|.
T Consensus 115 ~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 194 (651)
T 2e6k_A 115 VTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISID 194 (651)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETT
T ss_pred eccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCcccc
Confidence 35699999999999999985 378999999999999 67889999999999999999999999985
Q ss_pred HHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-EeC--ChhHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-RVT--KKKDVRAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 545 ~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V~--~~~eL~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
...+ . ....|+.+++++||++++ +|+ +.++|.++++++.+.++|+||+|.+.+..
T Consensus 195 ~~~~----------~---------~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~t~kg~ 252 (651)
T 2e6k_A 195 GPTD----------L---------AFTEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKLDERPTLIAVRSHIGF 252 (651)
T ss_dssp EEGG----------G---------TCCSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHHSSSCEEEEEECCTTT
T ss_pred cccc----------c---------ccCccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEEEeEecc
Confidence 3110 0 124799999999999999 887 89999999999998899999999998754
No 39
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.53 E-value=6.9e-15 Score=165.94 Aligned_cols=118 Identities=20% Similarity=0.147 Sum_probs=100.1
Q ss_pred CCcccccchHHHHHHHHhCC-----CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 482 GFGSMGFGLPAAMGAAVANP-----GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p-----~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
+.|+||+++|+|+|+++|.+ +++||+++|||+|+ |++++|.+|.++++|.+++|+||++|++...
T Consensus 119 ~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~-------- 190 (616)
T 3mos_A 119 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDP-------- 190 (616)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSB--------
T ss_pred cccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCC--------
Confidence 45899999999999999965 68999999999999 7899999999999999999999999987310
Q ss_pred cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
. .. .....||.+++++||+++++|+ +.++|.++|+++ .++|+||||.+.+...
T Consensus 191 -~-~~--------~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~--~~~P~lI~v~T~kg~G 245 (616)
T 3mos_A 191 -A-PL--------QHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA--KHQPTAIIAKTFKGRG 245 (616)
T ss_dssp -C-TT--------TTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC--CSSCEEEEEECCTTTT
T ss_pred -c-cc--------ccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc--CCCCEEEEEEEecccc
Confidence 0 00 0123589999999999999994 889999999765 6899999999987654
No 40
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.52 E-value=7.9e-15 Score=167.27 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=104.4
Q ss_pred CCCcccccchHHHHHHHHhCC--------------CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhh
Q 040733 481 SGFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMN 544 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 544 (643)
.+.|+||+++|+|+|+|+|.+ +++|++++|||+|+ |+.++|.+|.++++|.+|+|+|||+|+|.
T Consensus 111 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 190 (669)
T 2r8o_A 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISID 190 (669)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred cccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEec
Confidence 356999999999999999965 78999999999999 67888999999999999999999999975
Q ss_pred HHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-EeC--ChhHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 040733 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-RVT--KKKDVRAAIQLMLE-TPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 545 ~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V~--~~~eL~~al~~al~-~~gp~lIeV~v~~~~~~ 620 (643)
... .. ....|+.+++++||++++ +|+ +.++|.++++++.+ .++|+||+|.+.+....
T Consensus 191 ~~~----------~~---------~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~ 251 (669)
T 2r8o_A 191 GHV----------EG---------WFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIGFGS 251 (669)
T ss_dssp EEG----------GG---------TCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTC
T ss_pred ccc----------cc---------ccCccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHhcCCCCEEEEEEeEeccCc
Confidence 310 00 124699999999999999 887 99999999999997 68999999999887644
No 41
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.52 E-value=1.3e-14 Score=165.57 Aligned_cols=120 Identities=21% Similarity=0.212 Sum_probs=104.1
Q ss_pred CCcccccchHHHHHHHHhC--------------CCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 482 GFGSMGFGLPAAMGAAVAN--------------PGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~--------------p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
..|+||+++|+|+|+|+|. ++++|+|++|||+++ |+.++|.+|.+++++.+|+|+|||+|+|..
T Consensus 125 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~ 204 (675)
T 1itz_A 125 TTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDG 204 (675)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTE
T ss_pred CCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCC
Confidence 4589999999999999996 688999999999999 789999999999999999999999998742
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-EeC---ChhHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-RVT---KKKDVRAAIQLMLE-TPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V~---~~~eL~~al~~al~-~~gp~lIeV~v~~~~~~ 620 (643)
.. .. ....|+.+++++||++++ +|+ +.++|.++++++.+ .++|+||+|.+.+....
T Consensus 205 ~~----------~~---------~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~ 265 (675)
T 1itz_A 205 DT----------EI---------AFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIGFGS 265 (675)
T ss_dssp EG----------GG---------TCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTC
T ss_pred Ch----------hh---------hcChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHCCCCeEEEEEeeecccCc
Confidence 10 00 124799999999999999 887 89999999999997 68999999999886543
No 42
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.51 E-value=8.9e-15 Score=166.97 Aligned_cols=118 Identities=17% Similarity=0.176 Sum_probs=102.7
Q ss_pred CCcccccchHHHHHHHHhCC--------------CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 482 GFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
..|+||+++|.|+|+++|.+ +++|++++|||+++ |+.++|.+|.++++|.+|+|+|||+|+|..
T Consensus 114 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~ 193 (680)
T 1gpu_A 114 TTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDG 193 (680)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTE
T ss_pred ccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEec
Confidence 45899999999999999954 78999999999999 778999999999999999999999999753
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-EeC---ChhHHHHHHHHHHh-CCCcEEEEEEeCCCC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-RVT---KKKDVRAAIQLMLE-TPGPYLLDVMVSYQE 618 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V~---~~~eL~~al~~al~-~~gp~lIeV~v~~~~ 618 (643)
.. .. ....|+.+++++||++++ +|+ +.++|.++++++.+ .++|+||+|.+.+..
T Consensus 194 ~~----------~~---------~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~~~~P~lI~~~T~kg~ 252 (680)
T 1gpu_A 194 AT----------SI---------SFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGY 252 (680)
T ss_dssp EG----------GG---------TCCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEEEEEECCTTT
T ss_pred cc----------cc---------ccCccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHCCCCCEEEEEEeeccc
Confidence 10 00 124799999999999999 888 99999999999997 689999999998754
No 43
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.43 E-value=1e-13 Score=158.01 Aligned_cols=118 Identities=16% Similarity=0.196 Sum_probs=101.3
Q ss_pred CCcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 482 GFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
..|+||+++|.|+|+|+|.+ +++|+|++|||++++. ..+|.+|.++++|.+|+|+|||+|++..
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~ 193 (673)
T 1r9j_A 114 TTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDG 193 (673)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSS
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCcccc
Confidence 45899999999999999853 7899999999999964 7779999999999999999999998752
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-Ee---CChhHHHHHHHHHHh-CCCcEEEEEEeCCCC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-RV---TKKKDVRAAIQLMLE-TPGPYLLDVMVSYQE 618 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V---~~~~eL~~al~~al~-~~gp~lIeV~v~~~~ 618 (643)
..+ . ....|+.+.+++||++++ +| ++.+++.++++++.+ .++|+||+|.+.+..
T Consensus 194 ~~~----------~---------~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~~~~P~lI~~~T~kg~ 252 (673)
T 1r9j_A 194 STS----------L---------SFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQTTTIGF 252 (673)
T ss_dssp BGG----------G---------TCCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTT
T ss_pred chh----------h---------ccCHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCCEEEEEeccccc
Confidence 110 0 124789999999999999 88 789999999999987 789999999997754
No 44
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.14 E-value=6.6e-11 Score=134.27 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=97.6
Q ss_pred CCcccccchHHHHHHHHhCC-----------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 482 GFGSMGFGLPAAMGAAVANP-----------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p-----------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
..|++|.++|.|+|+|+|.+ ++.|+|++|||+++.. ...+.+|.++++|-+|+|+|||+|+
T Consensus 131 ~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~s 210 (700)
T 3rim_A 131 TTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQIS 210 (700)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE
T ss_pred cccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCcc
Confidence 34889999999999998742 5789999999999964 5569999999999788888888887
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHh-CCCcEEEEEEeCCCC
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLE-TPGPYLLDVMVSYQE 618 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~-~~gp~lIeV~v~~~~ 618 (643)
+-.. .. . ....|+.+.+++||+++++| .+.+++.++++++.+ .++|+||++.+....
T Consensus 211 i~~~---------~~-~---------~~~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~~~~~P~lI~~~T~kG~ 271 (700)
T 3rim_A 211 IEDD---------TN-I---------ALCEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQAVTDRPSFIALRTVIGY 271 (700)
T ss_dssp TTEE---------GG-G---------TCCCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTT
T ss_pred cccc---------hh-h---------ccchhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHHcCCCCEEEEEEEEeee
Confidence 6311 00 0 12468999999999999999 489999999999997 789999999997654
No 45
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.08 E-value=7.3e-11 Score=136.68 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=96.3
Q ss_pred CCCcccccchHHHHHHHHhCC--------------CCeEEEEecCccc--cCCHHH-HHHHHHhCCC---eEEEEEeCCC
Q 040733 481 SGFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSF--IMNLQE-LAAIKAENIP---VKILLINNQY 540 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf--~m~~~e-L~Ta~~~~lp---v~ivV~NN~~ 540 (643)
.+-+.||.++|.|+|+++|.+ +..||++.|||+| ++.++| |.+|..+++| +++||.|| +
T Consensus 242 ~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN-~ 320 (868)
T 2yic_A 242 ANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN-Q 320 (868)
T ss_dssp CCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEEC-S
T ss_pred CCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcC-C
Confidence 345789999999999999842 3579999999998 578999 9999999998 99999988 7
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh----CCCcEEEEEEe
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE----TPGPYLLDVMV 614 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~----~~gp~lIeV~v 614 (643)
|||....+.. ...+++.++|++||+++++|+ +++++..++++|++ .++|+|||+.+
T Consensus 321 ~g~st~~~~~------------------~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~t 382 (868)
T 2yic_A 321 IGFTTAPTDS------------------RSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLC 382 (868)
T ss_dssp CBTTBCHHHH------------------CSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred cccccCcccc------------------ccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 8876432211 012456788999999999996 68999999988874 58999999999
Q ss_pred CCCC
Q 040733 615 SYQE 618 (643)
Q Consensus 615 ~~~~ 618 (643)
.+..
T Consensus 383 yR~~ 386 (868)
T 2yic_A 383 YRRR 386 (868)
T ss_dssp CCCS
T ss_pred ecCC
Confidence 7653
No 46
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=98.94 E-value=6.6e-10 Score=131.93 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=94.5
Q ss_pred CCcccccchHHHHHHHHhCC--------------CCeEEEEecCccc--cCCHHH-HHHHHHhCCC---eEEEEEeCCCc
Q 040733 482 GFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSF--IMNLQE-LAAIKAENIP---VKILLINNQYL 541 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf--~m~~~e-L~Ta~~~~lp---v~ivV~NN~~~ 541 (643)
+-+.||.++|.|+|+++|.+ +..++++.|||+| +..+.| |.+|..+++| +++||.|| +|
T Consensus 488 n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN-~~ 566 (1113)
T 2xt6_A 488 NPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN-QI 566 (1113)
T ss_dssp CCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEEC-SC
T ss_pred CCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeC-Cc
Confidence 35789999999999998842 3679999999998 677898 9999999998 88888888 67
Q ss_pred hhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh----CCCcEEEEEEeC
Q 040733 542 GMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE----TPGPYLLDVMVS 615 (643)
Q Consensus 542 g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~----~~gp~lIeV~v~ 615 (643)
||....... + ...++.++|++||+++++|+ +++++..++++|++ .++|+|||+.+.
T Consensus 567 gist~~~~~-----~-------------s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~ty 628 (1113)
T 2xt6_A 567 GFTTAPTDS-----R-------------SSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCY 628 (1113)
T ss_dssp BTTBCHHHH-----C-------------SSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_pred ccccCcccc-----c-------------cccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeE
Confidence 875421100 0 12345678999999999997 89999999888875 589999999997
Q ss_pred CCC
Q 040733 616 YQE 618 (643)
Q Consensus 616 ~~~ 618 (643)
+..
T Consensus 629 R~~ 631 (1113)
T 2xt6_A 629 RRR 631 (1113)
T ss_dssp CCS
T ss_pred ccC
Confidence 653
No 47
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=98.83 E-value=4e-09 Score=122.93 Aligned_cols=117 Identities=21% Similarity=0.258 Sum_probs=86.9
Q ss_pred CCcccccchHHHHHHHHhCCC---------CeEEEEecCccc--cCCHHH-HHHHHHhCCC---eEEEEEeCCCchhhH-
Q 040733 482 GFGSMGFGLPAAMGAAVANPG---------AIVVDIDGDGSF--IMNLQE-LAAIKAENIP---VKILLINNQYLGMNV- 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p~---------~~Vv~i~GDGsf--~m~~~e-L~Ta~~~~lp---v~ivV~NN~~~g~~~- 545 (643)
+-+.+|.++|.|+|+++|.+. ..||+++|||+| +..+.| |.+|..+++| +++||.||+ |++..
T Consensus 319 ~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~-~~ist~ 397 (933)
T 2jgd_A 319 NPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ-VGFTTS 397 (933)
T ss_dssp CCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC-------
T ss_pred cCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC-ccccCC
Confidence 346788999999999998543 379999999998 667888 9999999999 888888776 77754
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~----~~gp~lIeV~v~~~ 617 (643)
..+.. ....++.+++++||+++++|+ +++++..++++|.+ .++|+|||+.+.+.
T Consensus 398 ~~~~~------------------~~~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~ 457 (933)
T 2jgd_A 398 NPLDA------------------RSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRR 457 (933)
T ss_dssp ---------------------------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_pred CHHhc------------------ccchhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeee
Confidence 22210 123567888999999999985 47788888888774 58999999998664
No 48
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=98.75 E-value=1.3e-08 Score=118.32 Aligned_cols=121 Identities=18% Similarity=0.159 Sum_probs=95.5
Q ss_pred CcccccchHHHHHHHHhC-----------CCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHH
Q 040733 483 FGSMGFGLPAAMGAAVAN-----------PGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVEYED 549 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~-----------p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~ 549 (643)
.|+||.|++.|+|++++. .+++|++|+|||++. ++...|..|.+++++-+|+|+|||++.+-
T Consensus 191 tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~----- 265 (886)
T 2qtc_A 191 TVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLD----- 265 (886)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSS-----
T ss_pred ccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccC-----
Confidence 489999999999999873 478999999999999 56788999999999878888888887641
Q ss_pred HhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC----------------------------------------
Q 040733 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT---------------------------------------- 589 (643)
Q Consensus 550 ~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~---------------------------------------- 589 (643)
.+.... .....++.++.+++|.+.++|.
T Consensus 266 ----~~v~~~--------~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~ 333 (886)
T 2qtc_A 266 ----GPVTGN--------GKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV 333 (886)
T ss_dssp ----SBSCTT--------SCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHH
T ss_pred ----CCcccc--------ccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHH
Confidence 111100 0012478899999999999884
Q ss_pred -------------------------------ChhHHHHHHHHHHhC-CCcEEEEEEeCCCCCc
Q 040733 590 -------------------------------KKKDVRAAIQLMLET-PGPYLLDVMVSYQEHV 620 (643)
Q Consensus 590 -------------------------------~~~eL~~al~~al~~-~gp~lIeV~v~~~~~~ 620 (643)
+.+++.++++++.+. ++|+||++++...-..
T Consensus 334 r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~~~~PtlI~~~T~KG~G~ 396 (886)
T 2qtc_A 334 REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHTIKGYGM 396 (886)
T ss_dssp HHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTC
T ss_pred HHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHcCCCCEEEEEeeeecccc
Confidence 678889999998874 6999999999776533
No 49
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.15 E-value=1.2e-05 Score=96.84 Aligned_cols=153 Identities=10% Similarity=0.068 Sum_probs=115.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhh---C------C--CeEEecCChhHHHHHHHHHHHHhCCcEEEE
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR---S------N--IRSILPRHEQGGIFAAEGYARSSGTPGVCL 137 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~---~------~--i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~ 137 (643)
.|+|.+++++.. ..|++.+++||++.+.++.+.+.+ . | ..++..-+|.+|+.||.|.+.+..|+. .
T Consensus 6 ~~~GNeAvA~~a-~ag~~~~~~YPITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~--t 82 (1231)
T 2c42_A 6 TTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAAGALTT--T 82 (1231)
T ss_dssp EEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEE--E
T ss_pred EccHHHHHHHHH-HHCCCEEEEECCCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHHcCChHh--h
Confidence 478999999997 779999999999999999999852 1 2 389999999999999999997766644 3
Q ss_pred EccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHH-hhccceeee-EeCCcCcHHHHHHHHHHHhh
Q 040733 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEV-TRYMTKHNY-LVLDVDDIPRIIKEAFFIAT 215 (643)
Q Consensus 138 ~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~-~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~ 215 (643)
.|+|||+.-+...|..+....+|+|+...+++..-.+...+- +|-++ +.-.+.|-. ...++++.-.++..||.+|.
T Consensus 83 ~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g~~~glsi~~--~hsd~~~ar~~G~~vl~pss~QEa~dl~~~Af~lAe 160 (1231)
T 2c42_A 83 FTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALSIFG--DHQDIYAARQTGFAMLASSSVQEAHDMALVAHLAAI 160 (1231)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSC--CSHHHHTTTTSSCEEEECCSHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhCCCCCEEEEECCCCccCCCCcCCC--chhhHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHH
Confidence 589999999999997766678999999998875422211111 22222 222333433 35678899999999999998
Q ss_pred cCCCCeEEEEcc
Q 040733 216 SGRPGPVLIDIP 227 (643)
Q Consensus 216 s~~~GPV~i~iP 227 (643)
..+ -||.+...
T Consensus 161 k~~-~PVi~~~D 171 (1231)
T 2c42_A 161 ESN-VPFMHFFD 171 (1231)
T ss_dssp HHC-CCEEEEEE
T ss_pred HcC-CCEEEEec
Confidence 654 68876553
No 50
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=97.41 E-value=0.00015 Score=83.10 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=80.9
Q ss_pred cccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHH----HHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccc
Q 040733 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAA----IKAENIPVKILLINNQYLGMNVEYEDRYFEANRAN 558 (643)
Q Consensus 484 g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~T----a~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~ 558 (643)
|.+|+|++.|+|+++.+|+.+|+|++|||...=. +...|- +..+++.-+++|+++|++.+-. .
T Consensus 175 G~LGqGls~AvG~A~~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~i~g---------~--- 242 (845)
T 3ahc_A 175 GELGYALSHAYGAVMNNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIAN---------P--- 242 (845)
T ss_dssp SSTTCHHHHHHHHHTTCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSBSSSS---------B---
T ss_pred CCccchHhHHhhhhhcCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCCcCCC---------C---
Confidence 8999999999999999999999999999993321 111121 2245677777888888776521 0
Q ss_pred cccCCCCCCCCCCCCHHHHHhHCCCCEE-EeC-----ChhHHHHHHHHHH---------------h--CCCc--EEEEEE
Q 040733 559 SFLGDPLRKSEIFPDMLKFAEACGIPAA-RVT-----KKKDVRAAIQLML---------------E--TPGP--YLLDVM 613 (643)
Q Consensus 559 ~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V~-----~~~eL~~al~~al---------------~--~~gp--~lIeV~ 613 (643)
+.+. ....-|+.+..++||.+.+ .|+ +++++..++++++ + .++| .+|-+.
T Consensus 243 t~l~-----~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~r 317 (845)
T 3ahc_A 243 TILA-----RISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFR 317 (845)
T ss_dssp CHHH-----HSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEE
T ss_pred cccc-----ccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEE
Confidence 0000 0112378899999999988 664 5667776654333 2 3689 999999
Q ss_pred eCCCC
Q 040733 614 VSYQE 618 (643)
Q Consensus 614 v~~~~ 618 (643)
+...-
T Consensus 318 T~kG~ 322 (845)
T 3ahc_A 318 TPKGW 322 (845)
T ss_dssp CCTTT
T ss_pred CcccC
Confidence 87765
No 51
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=95.68 E-value=0.066 Score=55.10 Aligned_cols=116 Identities=17% Similarity=0.073 Sum_probs=76.7
Q ss_pred CeEEec-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH--hh---h----CCCCEEEEeCCCcccccCCCC
Q 040733 108 IRSILP-RHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMD--AY---S----DSIPILAITGQVSQKLLGTDA 177 (643)
Q Consensus 108 i~~i~~-~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~--A~---~----~~vPvlvItg~~~~~~~g~~~ 177 (643)
-|++.+ ..|++++.+|.|+|.. |...++-.|.++.+.-++..|.+ |+ . .++|++++.. ......+...
T Consensus 51 ~r~~~~gIaE~~~v~~a~G~A~~-G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~ 128 (324)
T 1umd_B 51 DRVMDTPLSEAAIVGAALGMAAH-GLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHH 128 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGG
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCc
Confidence 356644 9999999999999987 54344434788888777777754 22 1 7899998763 1111111111
Q ss_pred CCccCHHHHhhccceee-eEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchh
Q 040733 178 FQEIPVVEVTRYMTKHN-YLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231 (643)
Q Consensus 178 ~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~ 231 (643)
+|..| ..+++.+..+. +...++.+...++++|++ .++||+|.-|..+.
T Consensus 129 hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~ 177 (324)
T 1umd_B 129 HSQSP-EAHFVHTAGLKVVAVSTPYDAKGLLKAAIR-----DEDPVVFLEPKRLY 177 (324)
T ss_dssp SSCCC-HHHHHTSTTCEEEECCSHHHHHHHHHHHHH-----CSSCEEEEEEGGGS
T ss_pred cchhH-HHHHhcCCCCEEEEeCCHHHHHHHHHHHHh-----cCCCEEEEechHhc
Confidence 22223 47888887644 346678888888888885 34899998887664
No 52
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=95.30 E-value=0.039 Score=57.32 Aligned_cols=154 Identities=8% Similarity=-0.026 Sum_probs=94.5
Q ss_pred CCcHHHHHHHHHHHCC--CCEEEEccCCC--------cHHHHHHHhhCCCeEEecC-ChhHHHHHHHHHHHHhCCcEEEE
Q 040733 69 PRKGADIIVEALERQG--VTTVFAYPGGA--------SIEIHQSLTRSNIRSILPR-HEQGGIFAAEGYARSSGTPGVCL 137 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~G--V~~vFg~PG~~--------~~~l~~al~~~~i~~i~~~-hE~~A~~~A~Gyar~sg~~gv~~ 137 (643)
+++..+++.++|.++. -..|+++..+- ...|.+.+- +-|++.+- .|++++.+|.|+|...-| .++-
T Consensus 20 ~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~g--p~r~~~~gIaE~~~v~~a~G~A~~G~r-p~~~ 96 (342)
T 2bfd_B 20 KMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYG--KDRVFNTPLCEQGIVGFGIGIAVTGAT-AIAE 96 (342)
T ss_dssp EECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHC--TTTEEECCSCHHHHHHHHHHHHHTTCC-EEEE
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhC--CCeEEEcCcCHHHHHHHHHHHHHCCCe-eEEE
Confidence 3456666666555443 13344443221 123333220 24777765 999999999999987444 4443
Q ss_pred EccchhhHHHHHHHH-Hhh----h----CCC-CEEEEeCCCcccccCCCCCCccCHHHHhhccceeee-EeCCcCcHHHH
Q 040733 138 VSSGPGVTNIMTGLM-DAY----S----DSI-PILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRI 206 (643)
Q Consensus 138 ~t~GpG~~N~~~gl~-~A~----~----~~v-PvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~ 206 (643)
.|.++++.-+...+. ++. . -++ ||+++... .... +-..+|......+++.+..+.. ...++.+...+
T Consensus 97 ~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~-~g~~-~G~th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~ 174 (342)
T 2bfd_B 97 IQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPW-GCVG-HGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGL 174 (342)
T ss_dssp CSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEE-SCCS-SCGGGSSCCCHHHHHTSTTCEEECCSSHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEec-CCCC-CCcchhhHhHHHHHhcCCCcEEEeeCCHHHHHHH
Confidence 588999887777775 232 1 134 99988532 2111 2234666666778888765433 45677788888
Q ss_pred HHHHHHHhhcCCCCeEEEEcccchhh
Q 040733 207 IKEAFFIATSGRPGPVLIDIPVDVQL 232 (643)
Q Consensus 207 l~~A~~~A~s~~~GPV~i~iP~Dv~~ 232 (643)
++.|++. ++||+|..|..+..
T Consensus 175 l~~a~~~-----~~Pv~i~~p~~l~r 195 (342)
T 2bfd_B 175 LLSCIED-----KNPCIFFEPKILYR 195 (342)
T ss_dssp HHHHHHS-----SSCEEEEEEGGGTT
T ss_pred HHHHHhc-----CCcEEEEecchhcC
Confidence 8888762 48999988876543
No 53
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=95.15 E-value=0.1 Score=54.03 Aligned_cols=117 Identities=10% Similarity=-0.036 Sum_probs=79.6
Q ss_pred CeEEec-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH-hh----h----CCCCEEEEeCCCcccccCCCC
Q 040733 108 IRSILP-RHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMD-AY----S----DSIPILAITGQVSQKLLGTDA 177 (643)
Q Consensus 108 i~~i~~-~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~-A~----~----~~vPvlvItg~~~~~~~g~~~ 177 (643)
-+++.+ -.|++++.+|.|+|.. |.-.++-.|.++++.-++..|.. +. . .+.||+++..... .. +-..
T Consensus 52 ~r~~~~gisE~~~~~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~-~G~t 128 (338)
T 1qs0_B 52 SRVFDAPISESGIVGTAVGMGAY-GLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GI-YGGQ 128 (338)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SS-SCCS
T ss_pred CcEEEccccHHHHHHHHHHHHhC-CCEEEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CC-CCcc
Confidence 478875 7999999999999987 54333334788888777777753 32 1 3589998762111 11 1234
Q ss_pred CCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchhh
Q 040733 178 FQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL 232 (643)
Q Consensus 178 ~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~~ 232 (643)
+|......+++.+..+.. ...++.++..+++.|++. ++||+|..|..+..
T Consensus 129 h~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~~-----~~Pv~i~~p~~l~r 179 (338)
T 1qs0_B 129 THSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIEC-----DDPVIFLEPKRLYN 179 (338)
T ss_dssp SSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHHS-----SSCEEEEEEGGGSS
T ss_pred cccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc-----CCcEEEEEchHhhc
Confidence 566666788888765444 356777888888888762 48999988865543
No 54
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=94.98 E-value=0.1 Score=53.69 Aligned_cols=116 Identities=14% Similarity=0.015 Sum_probs=76.9
Q ss_pred CeEEec-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH-hhh--------CCCCEEEEeCCCcccccCCCC
Q 040733 108 IRSILP-RHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMD-AYS--------DSIPILAITGQVSQKLLGTDA 177 (643)
Q Consensus 108 i~~i~~-~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~-A~~--------~~vPvlvItg~~~~~~~g~~~ 177 (643)
-+++.+ ..|++++.+|.|+|.. |.-.++-.|.++.+.-++..|.+ +.. .++||+++.. +.....+...
T Consensus 50 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~ 127 (324)
T 1w85_B 50 DRVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHTPEL 127 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCCCTT
T ss_pred CcEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCCCCc
Confidence 467764 5999999999999976 54334434788888777777753 222 7999998842 1111111111
Q ss_pred CCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchh
Q 040733 178 FQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231 (643)
Q Consensus 178 ~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~ 231 (643)
+|. .+..+++.+..+.. ...++.+...+++.|++ .++||+|.-|..+.
T Consensus 128 hs~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~ 176 (324)
T 1w85_B 128 HSD-SLEGLVAQQPGLKVVIPSTPYDAKGLLISAIR-----DNDPVIFLEHLKLY 176 (324)
T ss_dssp SSC-CCHHHHTTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEEEEETTTS
T ss_pred ccc-cHHHHHccCCCCEEEeeCCHHHHHHHHHHHHH-----cCCCEEEEechHhc
Confidence 232 33488888876444 45677888888888885 34899998887664
No 55
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=94.93 E-value=0.033 Score=54.60 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=50.9
Q ss_pred HHHHhhhcCCEEEEecCccCccccCcccccc--CCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 328 YANYAVNECDLLLAAGVRFNERMTSKLEDFA--TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~--~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
.+.+.++++|++|++|+++.-+....+.... .++++|.|+.++...+. ..++.|.+|+.++|..|.+.+.
T Consensus 160 ~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~--~~~~~i~~~~~~~l~~l~~~l~ 231 (235)
T 1s5p_A 160 EIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGN--EFAEKYYGPASQVVPEFVEKLL 231 (235)
T ss_dssp HHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC-----CCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCc--cccEEEeCCHHHHHHHHHHHHH
Confidence 4556788999999999998644333332222 36789999999876654 5789999999999999986653
No 56
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=94.77 E-value=0.25 Score=55.41 Aligned_cols=155 Identities=15% Similarity=0.051 Sum_probs=97.5
Q ss_pred CCCcHHHHHHHHHHHCC--CCEEEEccCC-CcHHHHHHHhhC-CCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 040733 68 KPRKGADIIVEALERQG--VTTVFAYPGG-ASIEIHQSLTRS-NIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGP 142 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~G--V~~vFg~PG~-~~~~l~~al~~~-~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~Gp 142 (643)
.++...+++-++|.++. -..|+++-.+ ....+.+.|.+. +=|++ ....|++++.+|.|.|....+ -++..|+++
T Consensus 311 ~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~-~~~~~~f~~ 389 (616)
T 3mos_A 311 DKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRT-VPFCSTFAA 389 (616)
T ss_dssp CBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCC-EEEEEEEGG
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCC-CEEEEehHH
Confidence 34455555555554433 2345544333 222233444432 23566 456999999999999987654 344567899
Q ss_pred hhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCC--CCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 143 GVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 143 G~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
.+.-++..|..+...+.|++++.. ...-..|.+ .+|.+.+..+++.+..... ...++.++..+++.|+ .. +
T Consensus 390 Fl~~a~dqi~~~a~~~~~v~~v~~-~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~----~~-~ 463 (616)
T 3mos_A 390 FFTRAFDQIRMAAISESNINLCGS-HCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAA----NT-K 463 (616)
T ss_dssp GGGGGHHHHHHHHHTTCCEEEEEE-SBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHH----TC-C
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEE-CCCccccCCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHH----hc-C
Confidence 999999999988889999887643 322213432 4677788899999875433 2345555555555544 32 5
Q ss_pred CeEEEEcccc
Q 040733 220 GPVLIDIPVD 229 (643)
Q Consensus 220 GPV~i~iP~D 229 (643)
||++|..|.+
T Consensus 464 gp~~ir~~r~ 473 (616)
T 3mos_A 464 GICFIRTSRP 473 (616)
T ss_dssp SEEEEECCSS
T ss_pred CCEEEEEeCC
Confidence 9999999874
No 57
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=94.57 E-value=0.094 Score=54.33 Aligned_cols=112 Identities=16% Similarity=0.076 Sum_probs=79.4
Q ss_pred CeEEec-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhh---------CCCCEEEEeCCCcccccC-CC
Q 040733 108 IRSILP-RHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYS---------DSIPILAITGQVSQKLLG-TD 176 (643)
Q Consensus 108 i~~i~~-~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~---------~~vPvlvItg~~~~~~~g-~~ 176 (643)
-|++.+ ..|++++.+|.|+|.. |...++-.|.+..+.-++..|..+.. .+.||+++... . ..| .+
T Consensus 62 ~r~~d~gIaE~~~v~~a~G~A~~-G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G--~~g~~G 137 (341)
T 2ozl_B 62 KRIIDTPISEMGFAGIAVGAAMA-GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-G--ASAGVA 137 (341)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-S--CCSSCC
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-c--CCCCCC
Confidence 578877 6999999999999977 54344444788888777788775443 89998887652 2 222 11
Q ss_pred -CC-CccCHHHHhhccceeeeE-eCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccch
Q 040733 177 -AF-QEIPVVEVTRYMTKHNYL-VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDV 230 (643)
Q Consensus 177 -~~-Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv 230 (643)
.+ |.++ .+++.+..+... ..++.++..+++.|++. ++||+|..|..+
T Consensus 138 ~tHs~~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~i~~~~~~ 187 (341)
T 2ozl_B 138 AQHSQCFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIRD-----NNPVVVLENELM 187 (341)
T ss_dssp GGGCCCCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHHS-----SSCEEEEECHHH
T ss_pred cchhhHHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHhc-----CCCEEEEEChhh
Confidence 23 4444 788888765543 56777888888888763 499999999764
No 58
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=94.55 E-value=0.099 Score=52.53 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=49.7
Q ss_pred HHhhhcCCEEEEecCccCccccCcccc-ccCCceEEEEcCCccc-cc-CCCCCCeeEecCHHHHHHHHHHHH
Q 040733 330 NYAVNECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSNE-IG-KVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 330 ~~~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~iI~Id~d~~~-i~-~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
...+.+||++|++|+++.-+.-..+.. ...++.+|.|+.++.. .. .....|+.+.+|+.+.+..|.+.|
T Consensus 192 ~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~l 263 (285)
T 3glr_A 192 VVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELL 263 (285)
T ss_dssp HHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHh
Confidence 456789999999999986544433332 3345678889888753 11 234678999999999999998765
No 59
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=94.39 E-value=0.34 Score=54.65 Aligned_cols=114 Identities=14% Similarity=0.032 Sum_probs=78.5
Q ss_pred CeEEe-cCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEe-CCCcccccCC--CCCCccCH
Q 040733 108 IRSIL-PRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT-GQVSQKLLGT--DAFQEIPV 183 (643)
Q Consensus 108 i~~i~-~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvIt-g~~~~~~~g~--~~~Q~~d~ 183 (643)
=|++. ..-|++++.+|.|.|...|...++ .|..+-..-+...+..+...+.||+++. .+.-. .|. ..+|.+.+
T Consensus 403 ~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~-~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g--~G~dG~THq~~ed 479 (663)
T 3kom_A 403 ANYLSYGVREFGMAAIMNGLSLYGGIKPYG-GTFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIG--LGEDGPTHQPIEH 479 (663)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGG--GCTTCTTTCCSSH
T ss_pred CCeEecCccHHHHHHHHHHHHHcCCCEEEE-EehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc--cCCCCCCcCCHHH
Confidence 36665 489999999999999875644443 3477777777788888888999999984 33222 232 24788888
Q ss_pred HHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 184 VEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 184 ~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
..+++.+..... ...++.++..+++.|+ ...++||+|.+|.
T Consensus 480 ~a~lr~iPnl~V~~Pad~~e~~~~l~~A~----~~~~~Pv~ir~~r 521 (663)
T 3kom_A 480 VPSLRLIPNLSVWRPADTIETMIAWKEAV----KSKDTPSVMVLTR 521 (663)
T ss_dssp HHHHHTSTTCEEECCCSHHHHHHHHHHHH----HCSSCCEEEECCS
T ss_pred HHHHhcCCCcEEEeeCCHHHHHHHHHHHH----HhCCCCEEEEccC
Confidence 999998875322 2344445555555544 4346999999875
No 60
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=94.30 E-value=0.33 Score=54.60 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=98.8
Q ss_pred CCcHHHHHHHHHHHCCC--CEEEEc----cCC-CcHHHHHHHhhCCCeEEe-cCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 040733 69 PRKGADIIVEALERQGV--TTVFAY----PGG-ASIEIHQSLTRSNIRSIL-PRHEQGGIFAAEGYARSSGTPGVCLVSS 140 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV--~~vFg~----PG~-~~~~l~~al~~~~i~~i~-~~hE~~A~~~A~Gyar~sg~~gv~~~t~ 140 (643)
.++..+++.+.|.+..- +.|+.+ +++ ....|.+.+ +=|++. ...|++++.+|.|.|...-||-+. ++
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~---~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~--~~ 395 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVH---PHRYLDVGIAEEVAVTTAAGMALQGMRPVVA--IY 395 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHC---GGGEEECCSCHHHHHHHHHHHHHTTCEEEEE--EE
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhc---CcceEeccccHHHHHHHHHHHHHcCCEEEEE--ec
Confidence 45677777766655432 345654 443 344454433 236776 569999999999999874444443 37
Q ss_pred chhhHHHHHH-HHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhc
Q 040733 141 GPGVTNIMTG-LMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATS 216 (643)
Q Consensus 141 GpG~~N~~~g-l~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s 216 (643)
.+.+.-++-. +..+...+.||+++...... .|. ..+|...+..+++.+..+.. ...++.++..++..|++.
T Consensus 396 ~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~~--- 470 (629)
T 2o1x_A 396 STFLQRAYDQVLHDVAIEHLNVTFCIDRAGI--VGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH--- 470 (629)
T ss_dssp HHHHGGGHHHHHHTTTTTTCCCEEEEESBBC--CCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEECCcc--CCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHhC---
Confidence 7776655544 45577889999988733222 232 24677777889998876544 356777888888888874
Q ss_pred CCCCeEEEEcccc
Q 040733 217 GRPGPVLIDIPVD 229 (643)
Q Consensus 217 ~~~GPV~i~iP~D 229 (643)
++||+|..|..
T Consensus 471 --~~Pv~i~~~r~ 481 (629)
T 2o1x_A 471 --DGPFAIRYPRG 481 (629)
T ss_dssp --SSCEEEECCSS
T ss_pred --CCCEEEEecCC
Confidence 49999999864
No 61
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=94.29 E-value=0.26 Score=55.85 Aligned_cols=157 Identities=13% Similarity=0.011 Sum_probs=99.0
Q ss_pred CCCCcHHHHHHHHHHHCCCC--EEEEccCCCcHH-H-----HHHHhhC-CCeEEe-cCChhHHHHHHHHHHHHhCCcEEE
Q 040733 67 DKPRKGADIIVEALERQGVT--TVFAYPGGASIE-I-----HQSLTRS-NIRSIL-PRHEQGGIFAAEGYARSSGTPGVC 136 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~--~vFg~PG~~~~~-l-----~~al~~~-~i~~i~-~~hE~~A~~~A~Gyar~sg~~gv~ 136 (643)
..++...+++.+.|.+..-. .+++.-.+-... . ...+.+. +=|++. ...|++++.+|.|+|...|...++
T Consensus 352 ~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~GIaE~~~v~~a~GlA~~gG~~P~~ 431 (669)
T 2r8o_A 352 PAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYT 431 (669)
T ss_dssp CCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSSCEEEE
T ss_pred CccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccCCCCeeecchhHHHHHHHHHHHHHcCCCeEEE
Confidence 34556677777777765533 344443221000 0 0112222 246665 569999999999999885644444
Q ss_pred EEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhhcccee-eeEeCCcCcHHHHHHHHHHH
Q 040733 137 LVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRYMTKH-NYLVLDVDDIPRIIKEAFFI 213 (643)
Q Consensus 137 ~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~ 213 (643)
.|+.+-..-+..+|..+...+.||+++....... .|. ..+|.+.+..+++.+... .+...++.++..+++.|++.
T Consensus 432 -~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~-~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~a~~~ 509 (669)
T 2r8o_A 432 -STFLMFVEYARNAVRMAALMKQRQVMVYTHDSIG-LGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVER 509 (669)
T ss_dssp -EEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHC
T ss_pred -eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcC-cCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHh
Confidence 5778877777888888889999999886322211 232 246888888999987643 33345556666666666653
Q ss_pred hhcCCCCeEEEEcccc
Q 040733 214 ATSGRPGPVLIDIPVD 229 (643)
Q Consensus 214 A~s~~~GPV~i~iP~D 229 (643)
..+||+|.+|..
T Consensus 510 ----~~~Pv~i~~~r~ 521 (669)
T 2r8o_A 510 ----QDGPTALILSRQ 521 (669)
T ss_dssp ----SSSCEEEECCSS
T ss_pred ----CCCcEEEEeCCC
Confidence 359999999864
No 62
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=94.20 E-value=0.077 Score=54.46 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=48.6
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc-ccCCceEEEEcCCcccccCC------------------CCCCeeEecCHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSNEIGKV------------------KLPDVSICADAKL 389 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~iI~Id~d~~~i~~~------------------~~~~~~i~~D~~~ 389 (643)
+...+.++|++|++|+++.-+...++.. ...+..+|.|+.++...... ...++.|.+|+.+
T Consensus 214 a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~ 293 (323)
T 1j8f_A 214 MQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQ 293 (323)
T ss_dssp HHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHH
T ss_pred HHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHH
Confidence 4567889999999999986443323322 22345567788877654332 2368889999999
Q ss_pred HHHHHHHHH
Q 040733 390 VFNRMNMIL 398 (643)
Q Consensus 390 ~L~~L~~~l 398 (643)
+|..|.+.|
T Consensus 294 ~l~~L~~~l 302 (323)
T 1j8f_A 294 GCLALAELL 302 (323)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999998654
No 63
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=93.83 E-value=0.075 Score=53.74 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=47.2
Q ss_pred hhcCCEEEEecCccCccccCcccc-ccCCceEEEEcCCccc-cc-CCCCCCeeEecCHHHHHHHHHHHH
Q 040733 333 VNECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSNE-IG-KVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 333 l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~iI~Id~d~~~-i~-~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
+.++|++|++|+++.-+....+.. ...++++|.|+.++.. +. .....++.|.+|+.++|..|.+.|
T Consensus 209 ~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l 277 (289)
T 1q1a_A 209 HPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEEL 277 (289)
T ss_dssp -CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHH
T ss_pred hccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHc
Confidence 679999999999986444333322 2346789999988864 21 223578999999999999998764
No 64
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=93.81 E-value=0.074 Score=52.44 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=50.7
Q ss_pred HHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+.+.++++|++|++|+++.-+....+... ..++++|.|+.++...+. ..++.|.+|+.++|..|.+.|.
T Consensus 174 a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~lg 244 (246)
T 1yc5_A 174 AIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDD--IATLKYNMDVVEFARRVMEEGG 244 (246)
T ss_dssp HHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCc--ceeEEEeCCHHHHHHHHHHHcC
Confidence 44677899999999998754433333211 236789999998887643 4689999999999999987653
No 65
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=93.69 E-value=0.087 Score=52.15 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=51.4
Q ss_pred HHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
+...++++|++|++|+++.-+....+... ..++++|.|+.++...+. ..++.|.+|+.++|..|.+.+..
T Consensus 177 a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~l~~ 248 (253)
T 1ma3_A 177 AIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADP--IFDVKIIGKAGEVLPKIVEEVKR 248 (253)
T ss_dssp HHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGG--GCSEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCC--ceeEEEeCCHHHHHHHHHHHHHH
Confidence 45677899999999998754433333211 236789999998887643 46899999999999999876653
No 66
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=93.57 E-value=0.46 Score=53.60 Aligned_cols=154 Identities=12% Similarity=-0.011 Sum_probs=97.2
Q ss_pred CCcHHHHHHHHHHHCCC--CEEEEccCCCcHHHH------HHHhh--CCCeEEec-CChhHHHHHHHHHHHHhCCcEEEE
Q 040733 69 PRKGADIIVEALERQGV--TTVFAYPGGASIEIH------QSLTR--SNIRSILP-RHEQGGIFAAEGYARSSGTPGVCL 137 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV--~~vFg~PG~~~~~l~------~al~~--~~i~~i~~-~hE~~A~~~A~Gyar~sg~~gv~~ 137 (643)
.++..+++.+.|.+..- ..+++.-.+-..... ..+.+ .+=|++.+ ..|++++.+|.|+|...|. -.++
T Consensus 348 ~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~i~~gIaE~~~~~~a~GlA~~Gg~-~P~~ 426 (651)
T 2e6k_A 348 PIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILNGLNLHGGY-RAYG 426 (651)
T ss_dssp CBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSC-EEEE
T ss_pred cHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCceEecCcCHHHHHHHHHHHHHcCCC-EEEE
Confidence 45666666666665542 235544432211100 11222 22467764 5999999999999977633 2334
Q ss_pred EccchhhHHHHHHHHHhhhCCCCEEEEe-CCCcccccCC--CCCCccCHHHHhhccceee-eEeCCcCcHHHHHHHHHHH
Q 040733 138 VSSGPGVTNIMTGLMDAYSDSIPILAIT-GQVSQKLLGT--DAFQEIPVVEVTRYMTKHN-YLVLDVDDIPRIIKEAFFI 213 (643)
Q Consensus 138 ~t~GpG~~N~~~gl~~A~~~~vPvlvIt-g~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~ 213 (643)
.|+.+...=+..+|..+...+.||+++. .+.-. .|. ..+|.+.+..+++.+..+. +...++.++..+++.|++.
T Consensus 427 ~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g--~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~ 504 (651)
T 2e6k_A 427 GTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIA--LGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRR 504 (651)
T ss_dssp EEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHC
T ss_pred EeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc--cCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHc
Confidence 5667777777778888888899998884 33322 232 2468888889999886533 3455666777777777663
Q ss_pred hhcCCCCeEEEEcccc
Q 040733 214 ATSGRPGPVLIDIPVD 229 (643)
Q Consensus 214 A~s~~~GPV~i~iP~D 229 (643)
..+||+|.+|..
T Consensus 505 ----~~~Pv~i~~~r~ 516 (651)
T 2e6k_A 505 ----KEGPTALVLTRQ 516 (651)
T ss_dssp ----CSSCEEEECCSS
T ss_pred ----CCCCEEEEEeCC
Confidence 258999999864
No 67
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=93.55 E-value=0.44 Score=53.49 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=97.1
Q ss_pred CCcHHHHHHHHHHHCC--CCEEEEc----cCC-CcHHHHHHHhhCCCeEEe-cCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 040733 69 PRKGADIIVEALERQG--VTTVFAY----PGG-ASIEIHQSLTRSNIRSIL-PRHEQGGIFAAEGYARSSGTPGVCLVSS 140 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~G--V~~vFg~----PG~-~~~~l~~al~~~~i~~i~-~~hE~~A~~~A~Gyar~sg~~gv~~~t~ 140 (643)
.++..+++.+.|.+.. -+.|+.+ +++ ....|.+.+ +=+++. ...|++++.+|.|+|...-+|-+ .++
T Consensus 318 ~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~---~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~--~~~ 392 (621)
T 2o1s_A 318 LPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKF---PDRYFDVAIAEQHAVTFAAGLAIGGYKPIV--AIY 392 (621)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHC---TTTEEECCSCHHHHHHHHHHHHHTTCEEEE--EEE
T ss_pred hHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhC---CCceEecCcCHHHHHHHHHHHHHCCCEEEE--Eeh
Confidence 3567777766665543 2335554 443 334444433 346776 56999999999999987434333 347
Q ss_pred chhhHHHHHH-HHHhhhCCCCEEEEeCCCcccccCCC--CCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhc
Q 040733 141 GPGVTNIMTG-LMDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATS 216 (643)
Q Consensus 141 GpG~~N~~~g-l~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s 216 (643)
++.+.-++-- +..+...++||+++...... .|.+ .+|......+++.+..+.. ...++.++..+++.|++.+
T Consensus 393 ~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~-- 468 (621)
T 2o1s_A 393 STFLQRAYDQVLHDVAIQKLPVLFAIDRAGI--VGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYN-- 468 (621)
T ss_dssp TTGGGGGHHHHHHTTTTTTCCCEEEEESCBC--CCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCC--
T ss_pred HhHHHHHHHHHHHHHHhcCCCEEEEEECCcc--CCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcC--
Confidence 7877655544 45567789999888733222 2322 4666667788888865444 4567777888888877643
Q ss_pred CCCCeEEEEcccc
Q 040733 217 GRPGPVLIDIPVD 229 (643)
Q Consensus 217 ~~~GPV~i~iP~D 229 (643)
++||+|..|..
T Consensus 469 --~~Pv~i~~~r~ 479 (621)
T 2o1s_A 469 --DGPSAVRYPRG 479 (621)
T ss_dssp --SSCEEEECCSS
T ss_pred --CCCEEEEeCCC
Confidence 58999999865
No 68
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=93.53 E-value=0.099 Score=51.61 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=50.5
Q ss_pred HHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+.+.++++|++|++|+++.-+....+... ..++++|.|+.++...+. ..++.|.+|+.++|..|.+.+.
T Consensus 171 a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~l~ 241 (249)
T 1m2k_A 171 AMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTP--IADYSLRGKAGEVMDELVRHVR 241 (249)
T ss_dssp HHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCc--ceeEEEeCCHHHHHHHHHHHHH
Confidence 34567899999999998754333222211 246789999998887643 4689999999999999876654
No 69
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=93.49 E-value=0.17 Score=51.61 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=75.9
Q ss_pred cEEEEcC-Cch--hhHHHHHHHHHHhCCceeecCC--CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCc
Q 040733 274 PVLCVGG-GCL--NSSEELRKFVGLTGIPVTCTTM--GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNE 348 (643)
Q Consensus 274 PvIl~G~-g~~--~~~~~l~~lae~lg~PV~tt~~--gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~ 348 (643)
.+|++|+ |.. +..+.+.+||++||.-|-.|-. -.|.+|. .+.+|..|. .-.++|-|.+|-+=.-
T Consensus 198 ~ivVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTGk---------~V~P~lYiA~GISGAi 266 (315)
T 1efv_A 198 KVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPN--DMQVGQTGK---------IVAPELYIAVGISGAI 266 (315)
T ss_dssp SEEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTSB---------CCCCSEEEEESCCCCH
T ss_pred CEEEEcCCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCH--HheeccCCc---------ccCcceEEEecccCcH
Confidence 3666655 443 3457899999999999987732 2467764 455665542 3478999999977322
Q ss_pred cccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 349 RMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 349 ~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
....+ ......||-|+.|++.-= ...+|+.|++|+.+++.+|.+.++
T Consensus 267 QHlaG---m~~s~~IVAIN~D~~ApI-f~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 267 QHLAG---MKDSKTIVAINKDPEAPI-FQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp HHHTT---TTTCSEEEEEESCTTCGG-GGTCSEEEESCHHHHHHHHHHHTC
T ss_pred HHHhh---cccCCEEEEEeCCCCCCc-chhcCeEEeeeHHHHHHHHHHHHh
Confidence 21111 233456889999987421 236899999999999999998764
No 70
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=93.43 E-value=0.28 Score=49.16 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=54.8
Q ss_pred HHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccC----CCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 330 NYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGK----VKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 330 ~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~----~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
+..++++|+||++.+.+...-+++. .+...+++.||+.|....| ..-..+.++.|+..||..|.+.|..
T Consensus 268 r~~~~~a~~vimlaTmLHSIAtGNm--~Ps~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~L~~ 340 (345)
T 3c2q_A 268 RTTVMDKKMVIMLSTLLHSVATGNL--MPSYIKTVCVDIQPSTVTKLMDRGTSQAIGVVTDVGVFLVLLLKELER 340 (345)
T ss_dssp HHHHTTCSEEEEESCHHHHHHHHTT--CCTTSEEEEEESCHHHHHHHHHTCCSSEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHhccCCchHHHHHHHHHHHhccc--CcccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHHH
Confidence 4567899999999999877777664 2345689999999997754 3455689999999999999877653
No 71
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=93.28 E-value=0.34 Score=53.81 Aligned_cols=149 Identities=11% Similarity=0.035 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCCCCCeEE-EeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cc
Q 040733 437 QYAIQILNELTDDEETII-STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SF 514 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv-~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf 514 (643)
+.+++.|.+.== +.++ +.+..+. .+...+.. ..-+++....-. .+.-+|.|.+.+. +++.++++-=| |+
T Consensus 15 ~~l~~~L~~~GV--~~vfg~PG~~~~-~l~~al~~--~~i~~v~~~~E~---~Aa~~A~Gyar~t-g~p~v~~~TsGpG~ 85 (566)
T 1ozh_A 15 DLVVSQLEAQGV--RQVFGIPGAKID-KVFDSLLD--SSIRIIPVRHEA---NAAFMAAAVGRIT-GKAGVALVTSGPGC 85 (566)
T ss_dssp HHHHHHHHHHTC--CEEEEECCTTTH-HHHHHGGG--SSSEEEECSSHH---HHHHHHHHHHHHH-SSCEEEEECSTHHH
T ss_pred HHHHHHHHHCCC--CEEEEcCCCchH-HHHHHHHh--CCCcEEEeCCHH---HHHHHHHHHHHHH-CCCEEEEEccChHH
Confidence 456666666522 3343 3333332 22222222 235565543322 2456778877765 57777776555 45
Q ss_pred cCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHH
Q 040733 515 IMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV 594 (643)
Q Consensus 515 ~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL 594 (643)
.-.++.+.+|...++|+++|.-+-....+- .. .....|...+.+.+-...+++++++++
T Consensus 86 ~N~~~~l~~A~~~~vPll~itg~~~~~~~~--------------~~-------~~Q~~d~~~~~~~~tk~~~~v~~~~~~ 144 (566)
T 1ozh_A 86 SNLITGMATANSEGDPVVALGGAVKRADKA--------------KQ-------VHQSMDTVAMFSPVTKYAIEVTAPDAL 144 (566)
T ss_dssp HTTHHHHHHHHHHTCCEEEEEEECCTTTC---------------------------CCCHHHHHGGGCSEEEECCSGGGH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccccCC--------------CC-------cccccCHHHHHHHHhheEEEcCCHHHH
Confidence 556899999999999999998776542210 00 024579999999999999999999998
Q ss_pred HHHHHHHHh-----CCCcEEEEEEeC
Q 040733 595 RAAIQLMLE-----TPGPYLLDVMVS 615 (643)
Q Consensus 595 ~~al~~al~-----~~gp~lIeV~v~ 615 (643)
...+++|+. .+||+.|+++.|
T Consensus 145 ~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 145 AEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 877777653 369999999987
No 72
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=93.13 E-value=0.23 Score=51.91 Aligned_cols=115 Identities=17% Similarity=-0.000 Sum_probs=71.1
Q ss_pred CeEEec-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH-hhhC--------CCCEEEEeCCCcccccCCC-
Q 040733 108 IRSILP-RHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMD-AYSD--------SIPILAITGQVSQKLLGTD- 176 (643)
Q Consensus 108 i~~i~~-~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~-A~~~--------~vPvlvItg~~~~~~~g~~- 176 (643)
-|++.+ ..|++++.+|.|+|.. |...++-.|.++.+.-++..|.. +... ++||+++..... ..+.+
T Consensus 98 ~r~~d~gIaE~~~v~~a~G~A~~-G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg--~~g~g~ 174 (369)
T 1ik6_A 98 ERVIDTPLNEGGILGFAMGMAMA-GLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS--GTRGGL 174 (369)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC--------
T ss_pred CcEEECcccHHHHHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC--CCCCCc
Confidence 467764 5999999999999987 54334434788887767777655 3222 899987763222 11222
Q ss_pred CCCccCHHHHhhccceeeeE-eCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchh
Q 040733 177 AFQEIPVVEVTRYMTKHNYL-VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231 (643)
Q Consensus 177 ~~Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~ 231 (643)
.+|..+ ..+++.+..+... ..++.++..+++.|++ .++||+|..|..+.
T Consensus 175 ~hs~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-----~~~Pv~i~~p~~l~ 224 (369)
T 1ik6_A 175 YHSNSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR-----GDDPVVFLEPKILY 224 (369)
T ss_dssp -----H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH-----SSSCEEEEEEGGGS
T ss_pred cccccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh-----CCCCEEEEEehhhh
Confidence 233333 5788888765543 5677788888888876 24899999887764
No 73
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=93.10 E-value=0.15 Score=52.18 Aligned_cols=112 Identities=18% Similarity=0.271 Sum_probs=75.8
Q ss_pred CcEEEEcC-Cch--hhHHHHHHHHHHhCCceeecCC--CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccC
Q 040733 273 NPVLCVGG-GCL--NSSEELRKFVGLTGIPVTCTTM--GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFN 347 (643)
Q Consensus 273 rPvIl~G~-g~~--~~~~~l~~lae~lg~PV~tt~~--gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~ 347 (643)
-.+|++|+ |.. +..+.+.+||++||.-|-.|-. -.|.+|. .+.+|..|. .+.-|+|-|.+|-+=.
T Consensus 202 A~ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTGk--------~V~P~~lYiA~GISGA 271 (320)
T 1o97_D 202 VDFIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPK--SRQVGQSGK--------VVGSCKLYVAMGISGS 271 (320)
T ss_dssp SSEEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTSB--------CCTTCSEEEEESCCCC
T ss_pred CCEEEEcCCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCh--hhEeecCce--------EecccceEEEEeccCc
Confidence 34666655 443 3567899999999999987732 2467764 455665542 2445599999997632
Q ss_pred ccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 348 ERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 348 ~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
-....+ ......||-|+.|++.-= ...+|+.|++|+.+++.+|.+.+
T Consensus 272 iQHlaG---m~~s~~IVAIN~D~~ApI-F~~ADygiVgDl~~vvP~L~~~l 318 (320)
T 1o97_D 272 IQHMAG---MKHVPTIIAVNTDPGASI-FTIAKYGIVADIFDIEEELKAQL 318 (320)
T ss_dssp HHHHHH---HTTCSEEEEECSCTTCGG-GGTCSEEECSCHHHHHHHHHHHC
T ss_pred HHHHhh---cccCCEEEEEeCCCCCCc-ccccCeEEeeeHHHHHHHHHHHH
Confidence 111111 223456889999987421 23689999999999999998765
No 74
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=93.06 E-value=0.44 Score=54.09 Aligned_cols=156 Identities=11% Similarity=0.030 Sum_probs=97.1
Q ss_pred CCCCcHHHHHHHHHHHCCCC--EEEEccCCCcHHHH------HHHhh-------CCCeEE-ecCChhHHHHHHHHHHHHh
Q 040733 67 DKPRKGADIIVEALERQGVT--TVFAYPGGASIEIH------QSLTR-------SNIRSI-LPRHEQGGIFAAEGYARSS 130 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~--~vFg~PG~~~~~l~------~al~~-------~~i~~i-~~~hE~~A~~~A~Gyar~s 130 (643)
...++..+++-++|.+..-+ .+++.-.+-...-. ..+.+ .+=|++ ....|++++.+|.|+|...
T Consensus 353 ~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~p~R~~d~gIaE~~~vg~a~GlA~~G 432 (680)
T 1gpu_A 353 DSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFG 432 (680)
T ss_dssp SCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCCCCceecCCccHHHHHHHHHHHHhcC
Confidence 44567777777777776543 34544432111000 01221 123455 3678999999999999876
Q ss_pred CCc-EEEEEccchhhHHHHHHHHHhhhCCCCEEEEe-CCCcccccCC--CCCCccCHHHHhhccceee-eEeCCcCcHHH
Q 040733 131 GTP-GVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT-GQVSQKLLGT--DAFQEIPVVEVTRYMTKHN-YLVLDVDDIPR 205 (643)
Q Consensus 131 g~~-gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvIt-g~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~ 205 (643)
|.. .++ .|..+-..-+..+|..+...+.||+++. .+... .|. ..+|.+.+..+++.+.... +...++.++..
T Consensus 433 g~~~P~~-~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g--~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~ 509 (680)
T 1gpu_A 433 ANYKPYG-GTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIG--VGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSA 509 (680)
T ss_dssp TTCEEEE-EEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCSSHHHHHHTSSSCEEECCCSHHHHHH
T ss_pred CCceEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc--cCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHH
Confidence 433 333 4666666667777887888899999885 23222 232 2468888899999886432 23445556666
Q ss_pred HHHHHHHHhhcCCCCeEEEEcccc
Q 040733 206 IIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 206 ~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+++.|++ ..++||+|-+|..
T Consensus 510 ~l~~A~~----~~~~Pv~i~~~r~ 529 (680)
T 1gpu_A 510 AYKNSLE----SKHTPSIIALSRQ 529 (680)
T ss_dssp HHHHHHH----CSSCCEEEECCSS
T ss_pred HHHHHHH----hCCCcEEEEecCC
Confidence 6666655 3359999999863
No 75
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=92.97 E-value=0.16 Score=51.62 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=51.5
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+...+++||++|++|+++.-+...++.. .....+++.|+.++...+ ...++.|.+++.++|..|.+.|.
T Consensus 200 a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d--~~adl~i~g~~~evl~~L~~~Lg 270 (318)
T 3k35_A 200 ADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHD--RHADLRIHGYVDEVMTRLMKHLG 270 (318)
T ss_dssp HHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTG--GGCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCC--CcccEEEeCCHHHHHHHHHHHhC
Confidence 4567789999999999986443333321 124568999998887654 35789999999999999988775
No 76
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=92.95 E-value=0.68 Score=52.41 Aligned_cols=115 Identities=12% Similarity=0.005 Sum_probs=79.4
Q ss_pred CeEEe-cCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEe-CCCcccccCC--CCCCccCH
Q 040733 108 IRSIL-PRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT-GQVSQKLLGT--DAFQEIPV 183 (643)
Q Consensus 108 i~~i~-~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvIt-g~~~~~~~g~--~~~Q~~d~ 183 (643)
=|++. ...|++++.+|.|+|...|...++. |..+-..-+..+|..+...+.||+++. .+... .|. ..+|.+.+
T Consensus 402 ~R~id~GIaE~~~~~~a~GlA~~GG~~P~~~-~~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g--~G~dG~tHq~~ed 478 (673)
T 1r9j_A 402 GRYIRFGVREHAMCAILNGLDAHDGIIPFGG-TFLNFIGYALGAVRLAAISHHRVIYVATHDSIG--VGEDGPTHQPVEL 478 (673)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCSSH
T ss_pred CCeEecCccHHHHHHHHHHHHhcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEECCccC--cCCCCcccCCHHH
Confidence 35664 6899999999999998755433333 466666677778888888999998885 22222 232 24688888
Q ss_pred HHHhhcccee-eeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 184 VEVTRYMTKH-NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 184 ~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..+++.+... .+...++.++..+++.|++. ..+||+|.+|..
T Consensus 479 la~lr~iP~l~V~~Pad~~e~~~~l~~a~~~----~~~Pv~i~~~r~ 521 (673)
T 1r9j_A 479 VAALRAMPNLQVIRPSDQTETSGAWAVALSS----IHTPTVLCLSRQ 521 (673)
T ss_dssp HHHHHHSTTCEEECCSSHHHHHHHHHHHHHC----TTCCEEEECCSS
T ss_pred HHHHcCCCCCEEEeCCCHHHHHHHHHHHHHh----CCCeEEEEEcCC
Confidence 9999977642 33445556666666666653 359999998864
No 77
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=92.92 E-value=0.13 Score=51.50 Aligned_cols=66 Identities=9% Similarity=0.078 Sum_probs=49.1
Q ss_pred HHHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHH
Q 040733 328 YANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMN 395 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~ 395 (643)
.+...++++|++|++|+++.-+....+-. ...+++++.|+.++...+. ..++.|.+++.++|..|+
T Consensus 205 ~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~--~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 205 EVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN--RFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGG--GSSEEEESCHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCc--ceeEEEeCCHHHHHHHHh
Confidence 34467789999999999986443333211 2356789999998877654 578999999999998875
No 78
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=92.83 E-value=0.41 Score=53.19 Aligned_cols=107 Identities=14% Similarity=0.097 Sum_probs=79.6
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. ++++++++-=| +....+..+.+|...++|+++|.-+-....+ +.+ .
T Consensus 60 Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~v~~A~~~~~Pll~itg~~~~~~~---------~~~---~-------- 118 (573)
T 2iht_A 60 AGVAADVLARIT-GRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDI---------FPN---D-------- 118 (573)
T ss_dssp HHHHHHHHHHHH-CSCEEEEECTTHHHHHHHHHHHHHHHHTCCEEEEEEESCGGGC---------CTT---T--------
T ss_pred HHHHHHHHHHHH-CCCEEEEEccCchHHHHHHHHHHHHhhCCCEEEEcccCccccc---------CCc---C--------
Confidence 456778877766 57777776555 4444588999999999999999877553211 000 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
..+..|...+.+.+-...+++++++++...+++|+. .+||+.|+++.|-
T Consensus 119 ~~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 172 (573)
T 2iht_A 119 THQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDL 172 (573)
T ss_dssp STTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred ccccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 134579999999999999999999998888887764 3589999999874
No 79
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=92.83 E-value=0.18 Score=52.47 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=50.8
Q ss_pred HHHhhhcCCEEEEecCccCccccCccc-cccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLE-DFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+...+.++|++|++|+++.-+...++- .+..++.+|.|+.++... ...++.|.+|+.++|..|.+.|.
T Consensus 249 a~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~---~~~dl~i~g~~~~vl~~L~~~lg 317 (354)
T 2hjh_A 249 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH---AEFDLSLLGYCDDIAAMVAQKCG 317 (354)
T ss_dssp HHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTT---SCCSEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCC---CCcCEEEeCCHHHHHHHHHHHcC
Confidence 445678999999999998644333332 223366899999888753 24789999999999999988765
No 80
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=92.77 E-value=0.16 Score=52.15 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=51.4
Q ss_pred HHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+...+.+||++|++|+++.-+...++-.. ....++|.|+.++...+ ...++.|.+++.++|..|.+.|.
T Consensus 200 A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d--~~adl~i~g~a~evl~~L~~~Lg 270 (355)
T 3pki_A 200 ADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHD--RHADLRIHGYVDEVMTRLMEHLG 270 (355)
T ss_dssp HHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTG--GGCSEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCC--CccCEEEeCCHHHHHHHHHHHhC
Confidence 44677899999999999864433333211 23568999998887654 35789999999999999988775
No 81
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=92.75 E-value=0.5 Score=52.65 Aligned_cols=106 Identities=19% Similarity=0.153 Sum_probs=80.2
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++-=| |..-.+..+.+|...++|+++|.-+-....+ +..
T Consensus 62 Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~--------------g~~------- 119 (590)
T 1ybh_A 62 GVFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMI--------------GTD------- 119 (590)
T ss_dssp HHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGT--------------TTT-------
T ss_pred HHHHHHHHHHHH-CCCEEEEeccCchHHHHHHHHHHHHhhCCCEEEEeCcCCcccc--------------CCC-------
Confidence 566788887776 56666666555 4555689999999999999999876543210 000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+.+.+-...+++++++++...+++|+. .+||+.|+++.|-
T Consensus 120 ~~Q~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~dv 173 (590)
T 1ybh_A 120 AFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDI 173 (590)
T ss_dssp CTTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred cccccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcch
Confidence 124579999999999999999999999988888874 3589999998764
No 82
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=92.74 E-value=0.43 Score=54.14 Aligned_cols=151 Identities=16% Similarity=0.101 Sum_probs=96.9
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-ccc
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFI 515 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~ 515 (643)
+.+++.|.+.== +.++..-.+....+ ...+.-...-+++....-. .+.-+|.|.+.+. +++.|+++-=| |..
T Consensus 86 ~~lv~~L~~~GV--~~vFg~PG~~~~pl-~dal~~~~~i~~v~~~hE~---~Aa~aAdGyAr~t-Gkpgvv~~TsGpG~~ 158 (677)
T 1t9b_A 86 QIFNEMMSRQNV--DTVFGYPGGAILPV-YDAIHNSDKFNFVLPKHEQ---GAGHMAEGYARAS-GKPGVVLVTSGPGAT 158 (677)
T ss_dssp HHHHHHHHHTTC--CEEEECCCGGGHHH-HHHTTTCSSSEEECCSSHH---HHHHHHHHHHHHH-SSCEEEEECSTHHHH
T ss_pred HHHHHHHHHcCC--CEEEEecCccHHHH-HHHHHhCCCCeEEEeCChH---HHHHHHHHHHHHH-CCCEEEEECCChHHH
Confidence 455666655422 34444332332222 2223212235666543322 2456778877776 56766666555 555
Q ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHH
Q 040733 516 MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVR 595 (643)
Q Consensus 516 m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~ 595 (643)
-.++.|.+|...++|+++|.-+-....+ +.. .....|...+.+.+-...+++++++++.
T Consensus 159 N~~~gia~A~~d~vPllvItG~~~~~~~--------------g~~-------a~Q~~Dq~~i~~~~tk~~~~v~~~~~i~ 217 (677)
T 1t9b_A 159 NVVTPMADAFADGIPMVVFTGQVPTSAI--------------GTD-------AFQEADVVGISRSCTKWNVMVKSVEELP 217 (677)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCTTTT--------------TSC-------CTTCCCHHHHTGGGSSEEEECCSGGGHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCChhhc--------------CCC-------CccccCHHHHhhhheeEEEEcCCHHHHH
Confidence 5699999999999999999876543211 000 1245799999999999999999999998
Q ss_pred HHHHHHHh-----CCCcEEEEEEeC
Q 040733 596 AAIQLMLE-----TPGPYLLDVMVS 615 (643)
Q Consensus 596 ~al~~al~-----~~gp~lIeV~v~ 615 (643)
..+++|+. .+||++|+++.|
T Consensus 218 ~~i~~A~~~A~~grpGPV~l~lP~D 242 (677)
T 1t9b_A 218 LRINEAFEIATSGRPGPVLVDLPKD 242 (677)
T ss_dssp HHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHHHHhhCCCceEEEEcCHH
Confidence 88888775 468999999944
No 83
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=92.74 E-value=0.55 Score=52.62 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=85.3
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc-ccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS-FIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs-f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-. .+.-+|.|.+.+..+++.|+++-=|. ....++.|.+|...++|+++|.-+-....+
T Consensus 66 i~~i~~~~E~---~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l~~A~~~~vPlvvItg~~p~~~~---------- 132 (616)
T 2pan_A 66 IRHILARHVE---GASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARL---------- 132 (616)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHHHHHHHTTCCEEEEEEECCGGGT----------
T ss_pred CcEEeeCCHH---HHHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHHHHHHhcCCCEEEEecCCccccc----------
Confidence 4555543322 25667888888864567777665553 445589999999999999999887654210
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
+. + .....|..++++.+-...+++.+++++...+++|+. .+||+.|+++.|-
T Consensus 133 ----~~--~-----~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d~ 189 (616)
T 2pan_A 133 ----HK--E-----DFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDV 189 (616)
T ss_dssp ----TT--T-----CTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHHH
T ss_pred ----Cc--c-----cccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchhh
Confidence 00 0 124579999999999999999999999888888774 3689999999864
No 84
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=92.68 E-value=0.45 Score=53.38 Aligned_cols=113 Identities=13% Similarity=-0.049 Sum_probs=79.1
Q ss_pred eEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEe-CCCcccccCC--CCCCccCHH
Q 040733 109 RSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT-GQVSQKLLGT--DAFQEIPVV 184 (643)
Q Consensus 109 ~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvIt-g~~~~~~~g~--~~~Q~~d~~ 184 (643)
|++ ...-|++++.+|.|.|...|..-+|- |..+=..-+...|..+...+.||+++. .+.-. .|. ..+|.+.+.
T Consensus 383 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~-~f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g--~G~dG~THq~~ed~ 459 (632)
T 3l84_A 383 KNIHFGIREHAMAAINNAFARYGIFLPFSA-TFFIFSEYLKPAARIAALMKIKHFFIFTHDSIG--VGEDGPTHQPIEQL 459 (632)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG--GCTTCGGGSCSSHH
T ss_pred CeEEeCccHHHHHHHHHHHHHcCCCEEEEE-ecHHHHHHHHHHHHHHhccCCCEEEEEECCCcC--CCCCCCCCCCHhHH
Confidence 455 56799999999999998855433332 366666677778877778899999884 33222 232 247888889
Q ss_pred HHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 185 EVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 185 ~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+++.+..... ...++.++..+++.|++ .+|||+|.+|..
T Consensus 460 a~lr~iP~l~V~~P~d~~e~~~~l~~A~~-----~~~Pv~ir~~r~ 500 (632)
T 3l84_A 460 STFRAMPNFLTFRPADGVENVKAWQIALN-----ADIPSAFVLSRQ 500 (632)
T ss_dssp HHHHHSSSCEEECCSSHHHHHHHHHHHHH-----CSSCEEEECCSS
T ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHHh-----CCCCEEEEEcCC
Confidence 99999875433 34556667777777665 359999999864
No 85
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=92.61 E-value=0.6 Score=51.68 Aligned_cols=105 Identities=21% Similarity=0.178 Sum_probs=79.3
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +|+.++++-=| |....++.|.+|...++|+++|.-+-....+ +. +
T Consensus 53 Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~--------------~~--~----- 110 (563)
T 2uz1_A 53 AGHAAEGYARAG-AKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDD--------------ET--N----- 110 (563)
T ss_dssp HHHHHHHHHHHH-TSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGT--------------TS--C-----
T ss_pred HHHHHHHHHHHh-CCCEEEEEccCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccC--------------Cc--h-----
Confidence 556778877776 56777766555 5556689999999999999999876543211 00 0
Q ss_pred CCCC-CCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeC
Q 040733 568 SEIF-PDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVS 615 (643)
Q Consensus 568 ~~~~-~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~ 615 (643)
.... .|...+.+.+-...+++++++++...+++|+. .+||+.|+++.|
T Consensus 111 ~~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 111 TLQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CTTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hhhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 1245 79999999999999999999998888777664 459999999988
No 86
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=92.50 E-value=0.22 Score=51.82 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=46.6
Q ss_pred hhhcCCEEEEecCccCccccCcccc-ccCCceEEEEcCCccc-cc-CCCCCCeeEecCHHHHHHHHHHHH
Q 040733 332 AVNECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSNE-IG-KVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 332 ~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~iI~Id~d~~~-i~-~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
.+.++|++|++|+++.-+....+.. +..++++|.|+.++.. +. .....++.|.+|+..+|..|.+.|
T Consensus 216 ~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~L 285 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEEL 285 (361)
T ss_dssp ---CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHH
T ss_pred hhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHc
Confidence 3569999999999986544333322 2346788999988864 21 223478999999999999998765
No 87
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=92.43 E-value=0.51 Score=53.50 Aligned_cols=114 Identities=17% Similarity=0.109 Sum_probs=79.0
Q ss_pred CeEEe-cCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEe-CCCcccccCC--CCCCccC
Q 040733 108 IRSIL-PRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT-GQVSQKLLGT--DAFQEIP 182 (643)
Q Consensus 108 i~~i~-~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvIt-g~~~~~~~g~--~~~Q~~d 182 (643)
=|++. ...|++++.+|.|+|... |...++ .|..+..+-+..+|..+...+.||+++. .+... .|. ..+|.+.
T Consensus 414 ~R~id~gIaE~~~v~~a~GlA~~G~~~~P~~-~t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g--~G~dG~tHq~~e 490 (675)
T 1itz_A 414 ERNVRFGVREHGMGAICNGIALHSPGFVPYC-ATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIG--LGEDGPTHQPIE 490 (675)
T ss_dssp CCBCCCCSCHHHHHHHHHHHHTTCTTCEEEE-EEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCSS
T ss_pred CCeEeecccHHHHHHHHHHHHhcCCCCEEEE-EEHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc--cCCCCCCcCcHH
Confidence 35554 559999999999999765 233333 3577777777888888889999998886 22222 232 2468888
Q ss_pred HHHHhhcccee-eeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 183 VVEVTRYMTKH-NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 183 ~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+..+++.+... .+...++.++..+++.|++ ...+||+|.+|.
T Consensus 491 dla~lr~iP~l~V~~Pad~~e~~~~l~~a~~----~~~~Pv~i~~~r 533 (675)
T 1itz_A 491 HLVSFRAMPNILMLRPADGNETAGAYKVAVL----NRKRPSILALSR 533 (675)
T ss_dssp HHHHHHSSSSCEEECCCSHHHHHHHHHHHHH----CTTSCEEEEECS
T ss_pred HHHHhccCCCeEEEECCCHHHHHHHHHHHHH----hCCCcEEEEecC
Confidence 89999977642 3344555666666666665 335999999886
No 88
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=91.60 E-value=0.64 Score=51.31 Aligned_cols=106 Identities=12% Similarity=0.065 Sum_probs=77.2
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++-=| |....++.+.+|...++|+++|.-+-....+ +..
T Consensus 53 Aa~~A~GyAr~t-g~~~v~~~TsGpG~~N~~~gi~~A~~~~vPvl~itg~~~~~~~--------------~~~------- 110 (549)
T 3eya_A 53 AAFAAGAEAQLS-GELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEI--------------GSG------- 110 (549)
T ss_dssp HHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEESCGGGT--------------TSC-------
T ss_pred HHHHHHHHHHHh-CCCEEEEeCCCCcHhhhHHHHHHHHhhCCCEEEEeCCCchhhc--------------CCC-------
Confidence 455777877765 56777776555 4555689999999999999999876432110 000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~ 616 (643)
..+..|..++.+.+-...+++.+++++.+.+++|+ ...||+.|+++.|-
T Consensus 111 ~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~dv 163 (549)
T 3eya_A 111 YFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGDV 163 (549)
T ss_dssp CTTCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHHH
T ss_pred CCCccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhH
Confidence 12457899999998888999999998777777665 46799999998753
No 89
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=91.47 E-value=0.37 Score=48.97 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=74.0
Q ss_pred cEEEEcC-Cch--hhHHHHHHHHHHhCCceeecCC--CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCc
Q 040733 274 PVLCVGG-GCL--NSSEELRKFVGLTGIPVTCTTM--GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNE 348 (643)
Q Consensus 274 PvIl~G~-g~~--~~~~~l~~lae~lg~PV~tt~~--gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~ 348 (643)
.+|++|+ |.. +..+.+.+||++||.-|-.|-. -.|.+|. .+.+|..|. .-.++|-|.+|-+=.-
T Consensus 193 ~ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTGk---------~V~P~lYiA~GISGAi 261 (307)
T 1efp_A 193 RRVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPN--DWQVGQTGK---------VVAPELYVAVGISGAI 261 (307)
T ss_dssp SEEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSSSSB---------CCCCSEEEEESCCCCH
T ss_pred CEEEEcCCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCCh--hhEeccCCc---------ccCCceEEEEeccCcH
Confidence 4666655 443 2457899999999999987732 2467764 455665542 3478999999977322
Q ss_pred cccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHH
Q 040733 349 RMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMI 397 (643)
Q Consensus 349 ~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~ 397 (643)
....+ ......||-|+.|++.-= ...+|+.|++|+.+++.+|.+.
T Consensus 262 QHlaG---m~~s~~IVAIN~D~~ApI-F~~ADygiVgDl~~v~P~L~~~ 306 (307)
T 1efp_A 262 QHLAG---MKDSKVIVAINKDEEAPI-FQIADYGLVGDLFSVVPELTGK 306 (307)
T ss_dssp HHHTT---TTTCSEEEEEESCTTCGG-GGTCSEEEESCHHHHHHHHHHT
T ss_pred HHHhh---hccCCEEEEEeCCCCCCc-ccccCeEEeeeHHHHHHHHHhh
Confidence 21111 233456889999987421 2368999999999999998764
No 90
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=91.24 E-value=0.55 Score=52.50 Aligned_cols=106 Identities=12% Similarity=-0.007 Sum_probs=76.0
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.||++-=| |..-.++.+.+|...++|+++|.-+-...-+ +..
T Consensus 81 Aa~aA~GyAr~t-gkpgv~~~TsGpG~~N~~~gia~A~~~~vPlv~ItG~~~~~~~--------------g~~------- 138 (604)
T 2x7j_A 81 AGFFALGLAKAK-QRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELR--------------EVG------- 138 (604)
T ss_dssp HHHHHHHHHHHH-TSCEEEEECSSHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGS--------------SSC-------
T ss_pred HHHHHHHHHHhh-CCCEEEEECChhHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHh--------------CCC-------
Confidence 455777777766 57777776555 4555689999999999999999876543110 000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhH-------HHHHHHHHH----h-CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKD-------VRAAIQLML----E-TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~e-------L~~al~~al----~-~~gp~lIeV~v~~ 616 (643)
.....|...+.+.+-...++++++++ +...+++|+ . .+||+.|+++.|-
T Consensus 139 ~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 139 APQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp CTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred CCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 02456888888888888999988876 666666655 3 5799999999874
No 91
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=91.17 E-value=1.7 Score=40.22 Aligned_cols=131 Identities=17% Similarity=0.228 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCch--hhH---HHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCC-----------
Q 040733 260 ALRQTLKLIVESKNPVLCVGGGCL--NSS---EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGM----------- 323 (643)
Q Consensus 260 ~i~~~~~~L~~AkrPvIl~G~g~~--~~~---~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~----------- 323 (643)
..++++++|..|++.+|+-|+|-. .++ .+|.++.+..|+-|--- -||..-.+-|.
T Consensus 34 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGhMNVLLAEA~VP 104 (207)
T 1djl_A 34 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFG---------IHPVAGRMPGQLNVLLAEAGVP 104 (207)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEE---------ECTTCSSSTTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEE---------eCccCCCCCCCCcEEEEEeCCC
Confidence 356788999999999999999865 344 44555555667776221 13332111120
Q ss_pred ----CCcHHHHHhhhcCCEEEEecCccC-------cccc--Cc---cccccCCceEEEEcCCc----ccccC--CC-CCC
Q 040733 324 ----FGTVYANYAVNECDLLLAAGVRFN-------ERMT--SK---LEDFATRAKIVHIDIDS----NEIGK--VK-LPD 380 (643)
Q Consensus 324 ----~~~~~~~~~l~~aDlvL~vG~~~~-------~~~t--~~---~~~~~~~~~iI~Id~d~----~~i~~--~~-~~~ 380 (643)
.--...|.-+.+.|++|+||..-. +..+ .+ ++.|. ..++|.+--.- .-+.. .| +-+
T Consensus 105 Yd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt 183 (207)
T 1djl_A 105 YDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK-SKQVIVMKRSLGVGYAAVDNPIFYKPNT 183 (207)
T ss_dssp GGGEEEHHHHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGGSTTE
T ss_pred HHHHhhHHHHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeeccee-cCEEEEEECCCCCCcCCCcCcceecCCc
Confidence 011345667789999999997521 0001 01 11222 22455442111 11111 11 234
Q ss_pred eeEecCHHHHHHHHHHHHhh
Q 040733 381 VSICADAKLVFNRMNMILES 400 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~l~~ 400 (643)
.-+.||++..++.|...++.
T Consensus 184 ~MlfGDAK~~~~~l~~~l~~ 203 (207)
T 1djl_A 184 AMLLGDAKKTCDALQAKVRE 203 (207)
T ss_dssp EEEESCHHHHHHHHHHHHHT
T ss_pred eEEeccHHHHHHHHHHHHHH
Confidence 55679999999999887764
No 92
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=91.04 E-value=2.1 Score=38.66 Aligned_cols=129 Identities=13% Similarity=0.177 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCch--hhH---HHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCC-----------
Q 040733 260 ALRQTLKLIVESKNPVLCVGGGCL--NSS---EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGM----------- 323 (643)
Q Consensus 260 ~i~~~~~~L~~AkrPvIl~G~g~~--~~~---~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~----------- 323 (643)
..++++++|..|++.+|+-|+|-. .++ .++.++.+.-|+-|--- -||-.--+-|.
T Consensus 12 ~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGhmNVLLAEA~VP 82 (180)
T 1pno_A 12 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYA---------IHPVAGRMPGHMNVLLAEANVP 82 (180)
T ss_dssp CHHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEE---------ECTTCTTSTTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEE---------eccccccCCCcceEEEEeeCCC
Confidence 367788999999999999999865 344 44555555567766221 13332111120
Q ss_pred ----CCcHHHHHhhhcCCEEEEecCccC-------cccc--Cc---cccccCCceEEEEcCC----cccccC--CC-CCC
Q 040733 324 ----FGTVYANYAVNECDLLLAAGVRFN-------ERMT--SK---LEDFATRAKIVHIDID----SNEIGK--VK-LPD 380 (643)
Q Consensus 324 ----~~~~~~~~~l~~aDlvL~vG~~~~-------~~~t--~~---~~~~~~~~~iI~Id~d----~~~i~~--~~-~~~ 380 (643)
.-....|.-+.+.|++|++|..-. +..+ .+ ++.|. ..++|.+--. ..-+.. .| +-+
T Consensus 83 Yd~v~EMdeIN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt 161 (180)
T 1pno_A 83 YDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEK-AGTVLFIKRSMASGYAGVENELFFRNNT 161 (180)
T ss_dssp GGGEEEHHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGTSTTE
T ss_pred HHHHhhHHHHhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechhh-CCEEEEEECCCCCCcCCCcCcceecCCc
Confidence 011345667789999999997521 0011 01 11222 2244444211 111111 11 234
Q ss_pred eeEecCHHHHHHHHHHHH
Q 040733 381 VSICADAKLVFNRMNMIL 398 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~l 398 (643)
.-+.||++..++.|...+
T Consensus 162 ~MlfGDAK~~~~~l~~~l 179 (180)
T 1pno_A 162 MMLFGDAKKMTEQIVQAM 179 (180)
T ss_dssp EEEESCHHHHHHHHHHHH
T ss_pred eEEeccHHHHHHHHHHHh
Confidence 556799999999988654
No 93
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=90.81 E-value=0.42 Score=52.93 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=74.3
Q ss_pred CeEEecCChhH---HHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc-c--------CC
Q 040733 108 IRSILPRHEQG---GIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL-L--------GT 175 (643)
Q Consensus 108 i~~i~~~hE~~---A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~-~--------g~ 175 (643)
.+++..+--.+ ..-+|.|.+.+.+++.+|++-=| ++.-.+..|..|...+.|+++|.-+..... . .+
T Consensus 407 ~~~~~~~g~~g~~G~l~~A~Gaa~a~~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~ 485 (556)
T 3hww_A 407 YPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDL-SALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSER 485 (556)
T ss_dssp CCEEECCSSCCSSSHHHHHHHHHHHHCCCEEEEEEHH-HHHHTGGGHHHHTTCSSCEEEEEEESCC--------------
T ss_pred ceEEecCcccccccHHHHHHHHHhcCCCcEEEEEccH-HhhhcchhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhH
Confidence 55655442222 25678898888888887775444 344446789999999999988875443210 0 01
Q ss_pred ----CCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 176 ----DAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 176 ----~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
...+..|...+.+.+--..+++.+++++.+.+++| ... .||+.|++..|
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a----~~~-~gp~liev~~~ 538 (556)
T 3hww_A 486 ERFYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADA----WRT-PTTTVIEMVVN 538 (556)
T ss_dssp ---CCCCCCCCSHHHHHHTTCEEECCSSHHHHHHHHHHH----TTS-SSEEEEEEECC
T ss_pred HHhccCCCCCCHHHHHHHcCCcEEecCCHHHHHHHHHHH----HhC-CCCEEEEEECC
Confidence 11234677788887766677787776665555554 443 59999999765
No 94
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=90.71 E-value=0.6 Score=52.20 Aligned_cols=118 Identities=15% Similarity=0.075 Sum_probs=81.3
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-. .+.-+|.|.+.+. +++.||++==| |....++.+.+|...++|+++|.-+-....+
T Consensus 51 i~~i~~~hE~---~Aa~aA~GyAr~t-g~~gv~~~TsGpG~~N~~~gia~A~~~~vPvl~itG~~~~~~~---------- 116 (603)
T 4feg_A 51 IHYIQVRHEE---VGAMAAAADAKLT-GKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGM---------- 116 (603)
T ss_dssp SEEEECSSHH---HHHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTTT----------
T ss_pred CeEEEecChH---HHHHHHHHHHHHh-CCceEEEecCCchHHHHHHHHHHHHHcCCCEEEEecCCccccc----------
Confidence 4565543321 2456777777665 56777766555 5556689999999999999999876442110
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSYQ 617 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~~ 617 (643)
+.. .....|...+.+.+-...+++.+++++...+++|+ ...||+.|+++.|-.
T Consensus 117 ----~~~-------~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~dv~ 173 (603)
T 4feg_A 117 ----NMD-------TFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLP 173 (603)
T ss_dssp ----TSC-------CTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHHHTSEEEEEEETTGG
T ss_pred ----CCC-------ccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhhh
Confidence 000 12446888888888888899999988776666654 468999999998643
No 95
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=90.68 E-value=1.1 Score=49.59 Aligned_cols=111 Identities=19% Similarity=0.110 Sum_probs=73.9
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +|++++++-=| +....++.+.+|...++|+++|.-+-....+ +.. ..+ ..
T Consensus 71 Aa~~A~GyAr~t-gkp~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~---------~~~---~~~----~~ 133 (565)
T 2nxw_A 71 VGFAADAAARYS-STLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEG---------NAG---LLL----HH 133 (565)
T ss_dssp HHHHHHHHHHHH-TSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTCC-----------C---CCC------
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHHHHhhCCCEEEEeCCCChhhh---------ccC---cce----ee
Confidence 455677877766 56777766544 4555689999999999999999887432111 000 000 00
Q ss_pred CCCCCC-HHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCC
Q 040733 568 SEIFPD-MLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d-~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~ 616 (643)
.....| ...+.+.+-...+++++++++...+++|+ ..+||+.|+++.|-
T Consensus 134 ~~q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 187 (565)
T 2nxw_A 134 QGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQSRPVYLEIPRNM 187 (565)
T ss_dssp -----CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred eccchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEECChhh
Confidence 012356 78899999889999999888776666655 35799999999664
No 96
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=90.31 E-value=0.49 Score=50.64 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=50.3
Q ss_pred HHHhhhcCCEEEEecCccCccccCccc-cccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLE-DFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+...+.+||++|++|+++.-+.-.++- .+..++++|.|+.++..- ...++.+.||+.+++..|.+.|.
T Consensus 387 a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~---~~~Dl~l~G~cdevv~~L~~~LG 455 (492)
T 4iao_A 387 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH---AEFDLSLLGYCDDIAAMVAQKCG 455 (492)
T ss_dssp HHHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTT---SCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCC---CCccEEEeCCHHHHHHHHHHHhC
Confidence 345678999999999998644433332 233456788899888652 34699999999999999988764
No 97
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=90.19 E-value=1.8 Score=39.90 Aligned_cols=129 Identities=13% Similarity=0.198 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCch--hhH---HHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCC-----------
Q 040733 260 ALRQTLKLIVESKNPVLCVGGGCL--NSS---EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGM----------- 323 (643)
Q Consensus 260 ~i~~~~~~L~~AkrPvIl~G~g~~--~~~---~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~----------- 323 (643)
..++++++|..|++.+|+-|+|-. .++ .+|.++.+..|+-|--- -||..-.+-|.
T Consensus 35 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGhMNVLLAEA~VP 105 (203)
T 2fsv_C 35 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYA---------IHPVAGRMPGHMNVLLAEANVP 105 (203)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEE---------ECTTCSSSTTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEE---------ecccccCCCCCccEEEEEecCC
Confidence 466788999999999999999865 344 44555555667776221 14432111120
Q ss_pred ----CCcHHHHHhhhcCCEEEEecCccC-------cccc--Cc---cccccCCceEEEEcCCc----ccccC--CC-CCC
Q 040733 324 ----FGTVYANYAVNECDLLLAAGVRFN-------ERMT--SK---LEDFATRAKIVHIDIDS----NEIGK--VK-LPD 380 (643)
Q Consensus 324 ----~~~~~~~~~l~~aDlvL~vG~~~~-------~~~t--~~---~~~~~~~~~iI~Id~d~----~~i~~--~~-~~~ 380 (643)
.--...|.-+.+.|++|+||..-. +..+ .+ ++.|. ..++|.+--.- .-+.. .| +-+
T Consensus 106 Yd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt 184 (203)
T 2fsv_C 106 YDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWK-AGTVLFIKRSMASGYAGVENELFFRNNT 184 (203)
T ss_dssp GGGEEEHHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGGSTTE
T ss_pred HHHHhhHHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeecccc-CCEEEEEECCCCCCcCCCcCcceecCCc
Confidence 011345666789999999997521 0011 01 11122 22455442111 11111 11 234
Q ss_pred eeEecCHHHHHHHHHHHH
Q 040733 381 VSICADAKLVFNRMNMIL 398 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~l 398 (643)
.-+.||++..++.|...+
T Consensus 185 ~MlfGDAK~~~~~l~~~l 202 (203)
T 2fsv_C 185 MMLFGDAKKMTEQIVQAM 202 (203)
T ss_dssp EEEESCHHHHHHHHHHHC
T ss_pred eEEeccHHHHHHHHHHHh
Confidence 556799999999987653
No 98
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=90.17 E-value=1.5 Score=48.84 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=83.2
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....- ..+.-+|.|.+.+. +++.++++-=| ++...++.|.+|...++|+++|.-+-....+
T Consensus 44 i~~i~~~~E---~~Aa~~A~GyAr~t-gk~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~Itg~~p~~~~---------- 109 (590)
T 1v5e_A 44 VKFLQVKHE---EVGAMAAVMQSKFG-GNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQREL---------- 109 (590)
T ss_dssp CEEEECSSH---HHHHHHHHHHHHTT-CCCCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGT----------
T ss_pred CeEEeeCCH---HHHHHHHHHHHHHH-CCCEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEcCCCCcccC----------
Confidence 455554332 22567888888876 56766666555 5555699999999999999999987653211
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
+.. .....|...+.+.+-...+++++++++.+.+++|+. .+||+.| ++.|-.
T Consensus 110 ----g~~-------~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv~ 166 (590)
T 1v5e_A 110 ----NMD-------AFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDFA 166 (590)
T ss_dssp ----TTT-------CTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTGG
T ss_pred ----CCC-------cccccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccchh
Confidence 000 024578899999998889999999988887777664 3489999 888753
No 99
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=90.14 E-value=1 Score=49.75 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=82.7
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~ 552 (643)
.-+++....-.+ +.-+|.|.+.+. +++.++++-=| |....++.+.+|...++|+++|.-+-.... +. .
T Consensus 45 ~i~~i~~~hE~~---Aa~~A~Gyar~t-g~pgv~~~TsGpG~~N~~~gi~~A~~~~vPll~itg~~~~~~-----~~--~ 113 (564)
T 2q28_A 45 GIRYIGFRHEQS---AGYAAAASGFLT-QKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAI-----VD--L 113 (564)
T ss_dssp TCEEEECSSHHH---HHHHHHHHHHHH-SSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHH-----HH--T
T ss_pred CCcEEeeCCHHH---HHHHHHHHHHHh-CCCEEEEEccCchHHHHHHHHHHHHhcCCCEEEEeCCCCccc-----cC--C
Confidence 355555433221 455677777665 57777777655 444458899999999999999997754311 00 0
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeC
Q 040733 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVS 615 (643)
Q Consensus 553 ~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~ 615 (643)
+ . + .....|...+.+.+-...+++++++++...+++|+. .+||+.|+++.|
T Consensus 114 ~-----~--~-----~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 114 Q-----Q--G-----DYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp T-----S--C-----CTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred C-----C--C-----ccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 0 0 0 024578999999999999999999888777777653 569999999987
No 100
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=89.98 E-value=1.5 Score=49.57 Aligned_cols=155 Identities=14% Similarity=0.025 Sum_probs=93.3
Q ss_pred CCCcHHHHHHHHHHHCCC--CEEEEccCCCcHHH------HHHHhh-C------C----CeEE-ecCChhHHHHHHHHHH
Q 040733 68 KPRKGADIIVEALERQGV--TTVFAYPGGASIEI------HQSLTR-S------N----IRSI-LPRHEQGGIFAAEGYA 127 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV--~~vFg~PG~~~~~l------~~al~~-~------~----i~~i-~~~hE~~A~~~A~Gya 127 (643)
.++...+++-+.|.+..= ..++++-.+-...- .+.|.+ . + =|++ ...-|++++.+|.|.|
T Consensus 373 ~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA 452 (700)
T 3rim_A 373 KALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILSGIV 452 (700)
T ss_dssp SCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHHHHHHHHHH
Confidence 456777888888877653 45666554321110 011211 1 1 1565 4589999999999999
Q ss_pred HHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhhccceeee-EeCCcCcHH
Q 040733 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRYMTKHNY-LVLDVDDIP 204 (643)
Q Consensus 128 r~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~ 204 (643)
...|..-++- |..+=..-+.+.+..+...+.||+++....... .|. ..+|.+.+..+++.+..... ...++.++.
T Consensus 453 ~~gG~~Pv~~-tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~g-vG~dG~THq~ied~a~lr~iPnl~V~~Pad~~e~~ 530 (700)
T 3rim_A 453 LHGPTRAYGG-TFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIG-LGEDGPTHQPIEHLSALRAIPRLSVVRPADANETA 530 (700)
T ss_dssp HHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTSCSSHHHHHHTSTTCEEECCSSHHHHH
T ss_pred HcCCCEEEEE-ecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcc-cCCCCCccCChhHHHHHhcCCCCEEEeCCCHHHHH
Confidence 8855433332 433323335566777778899999875322111 232 24788899999999875332 233444455
Q ss_pred HHHHHHHHHhhcCCC--CeEEEEccc
Q 040733 205 RIIKEAFFIATSGRP--GPVLIDIPV 228 (643)
Q Consensus 205 ~~l~~A~~~A~s~~~--GPV~i~iP~ 228 (643)
.+++ .|...+. |||+|.+|.
T Consensus 531 ~~l~----~Ai~~~~~~~Pv~ir~~r 552 (700)
T 3rim_A 531 YAWR----TILARRNGSGPVGLILTR 552 (700)
T ss_dssp HHHH----HHHTTTTCSSCEEEECCS
T ss_pred HHHH----HHHHccCCCCCEEEEecc
Confidence 4444 4444444 799999886
No 101
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=89.95 E-value=0.72 Score=48.13 Aligned_cols=112 Identities=19% Similarity=0.117 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHh---CCcEEEEEccchhhHHH---HHHHHHhhhCCCCEEEEeCCCcccccC--CCCCCccCHHHHhh
Q 040733 117 QGGIFAAEGYARSS---GTPGVCLVSSGPGVTNI---MTGLMDAYSDSIPILAITGQVSQKLLG--TDAFQEIPVVEVTR 188 (643)
Q Consensus 117 ~~A~~~A~Gyar~s---g~~gv~~~t~GpG~~N~---~~gl~~A~~~~vPvlvItg~~~~~~~g--~~~~Q~~d~~~~~~ 188 (643)
..+.-+|.|.|++. +.-.++++..|=|.++. .-++..|..-+.|+|+|.-+....... .......|...+++
T Consensus 145 G~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~ 224 (368)
T 1w85_A 145 GAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAV 224 (368)
T ss_dssp THHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGG
T ss_pred CccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHH
Confidence 34556778888775 22334445567777773 236777888999999998544221110 00111234555666
Q ss_pred ccceeeeEeC--CcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 189 YMTKHNYLVL--DVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 189 ~~tk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+--...+|. +++++..++++|+..+.++. ||+.|++-..
T Consensus 225 a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~-gP~lIe~~t~ 266 (368)
T 1w85_A 225 AAGIPGIQVDGMDPLAVYAAVKAARERAINGE-GPTLIETLCF 266 (368)
T ss_dssp GTTCCEEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEEECC
T ss_pred HCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEEee
Confidence 6544455665 57788888889888877664 8999998654
No 102
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=89.81 E-value=1.2 Score=50.27 Aligned_cols=114 Identities=15% Similarity=0.040 Sum_probs=72.6
Q ss_pred eEE-ecCChhHHHHHHHHHHHHhC-CcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCC--CCCccCHH
Q 040733 109 RSI-LPRHEQGGIFAAEGYARSSG-TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVV 184 (643)
Q Consensus 109 ~~i-~~~hE~~A~~~A~Gyar~sg-~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~ 184 (643)
|++ ...-|++++.+|.|.|...| +|-+. |..+=..=+-.++..+...+.||+++....... .|.+ .+|.+.+.
T Consensus 428 R~~d~GIaE~~mv~~A~GlA~~gG~~P~~~--tf~~Fs~f~~~air~~al~~lpVv~v~~~~gig-vG~dG~THq~ied~ 504 (690)
T 3m49_A 428 KNIWYGVREFAMGAAMNGIALHGGLKTYGG--TFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIA-VGEDGPTHEPIEQL 504 (690)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE--EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGCCSSHH
T ss_pred ceEEcCchHHHHHHHHHHHHHcCCCEEEEE--ecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcC-CCCCCCccCCHHHH
Confidence 444 56789999999999999855 44443 333323334445666677899999886322221 2322 47888889
Q ss_pred HHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 185 EVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 185 ~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+++.+..... ...++.++..+++. |.....|||+|.+|..
T Consensus 505 a~lr~iPnl~V~~Pad~~E~~~~l~~----Ai~~~~~Pv~ir~~R~ 546 (690)
T 3m49_A 505 AALRAMPNVSVIRPADGNESVAAWRL----ALESTNKPTALVLTRQ 546 (690)
T ss_dssp HHHHTSTTCEEECCSSHHHHHHHHHH----HHHCSSSCEEEECCSS
T ss_pred HHHhcCCCCEEEeeCCHHHHHHHHHH----HHHcCCCCEEEEeecc
Confidence 99999875432 23444455555544 4444469999998863
No 103
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=89.49 E-value=1.7 Score=49.26 Aligned_cols=113 Identities=16% Similarity=0.014 Sum_probs=75.4
Q ss_pred eEEe-cCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHH
Q 040733 109 RSIL-PRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVE 185 (643)
Q Consensus 109 ~~i~-~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~ 185 (643)
|++. ..-|++++.+|.|.|...|..-++. +..+=..-+...|..+...+.||+++....... .|. ..+|.+.+..
T Consensus 449 R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~-~f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~g-vG~dG~THq~~ed~a 526 (711)
T 3uk1_A 449 NHINYGVREFGMSAAINGLVLHGGYKPFGG-TFLTFSDYSRNALRVAALMKVPSIFVFTHDSIG-LGEDGPTHQSVEHVA 526 (711)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCCSSHHH
T ss_pred cEEEeCccHHHHHHHHHHHHHcCCCEEEEE-EhHHHHHHHHHHHHHhhhcCCCEEEEEECCCcC-cCCCCCccCChhHHH
Confidence 4554 4789999999999997656433433 344433445566666667899999876221111 232 2478888999
Q ss_pred Hhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 186 VTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 186 ~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+++.+..... ...++.++..+++.|++ .+|||+|.+|.
T Consensus 527 ~lr~iPnl~V~~Pad~~E~~~~l~~Ai~-----~~~Pv~ir~~r 565 (711)
T 3uk1_A 527 SLRLIPNLDVWRPADTVETAVAWTYAVA-----HQHPSCLIFSR 565 (711)
T ss_dssp HHHTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEEECCS
T ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHh-----cCCCEEEEeeC
Confidence 9999875333 34566677777777766 35999999885
No 104
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=88.91 E-value=1.8 Score=48.15 Aligned_cols=106 Identities=12% Similarity=0.043 Sum_probs=73.5
Q ss_pred chHHHHHHHHhCCCCeEEEEecC-ccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGD-GSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GD-Gsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. ++++++++-= -+....++.+.+|...++|+++|.-+-....+ +... .
T Consensus 55 Aa~~A~GyAr~t-g~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~---------~~~~---~------- 114 (589)
T 2pgn_A 55 GAWMVNGYNYVK-DRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLA---------GRSE---A------- 114 (589)
T ss_dssp HHHHHHHHHHHH-TSCCEEEEEEGGGGGGCHHHHHHHHHTTCCEEEEEEESCGGGT---------TCTT---C-------
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEEecCCccccc---------CCCC---c-------
Confidence 456777877665 4555555433 35555699999999999999999876543211 0000 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.+..|... .+.+-...+++++++++...+++|+. .+||+.|+++.|-
T Consensus 115 -~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 166 (589)
T 2pgn_A 115 -AQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDL 166 (589)
T ss_dssp -SSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETHH
T ss_pred -ccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHhh
Confidence 23457767 77777788999999998888887763 3589999999873
No 105
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=88.88 E-value=3.8 Score=37.09 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCch--hhH---HHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCC--------
Q 040733 258 ELALRQTLKLIVESKNPVLCVGGGCL--NSS---EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMF-------- 324 (643)
Q Consensus 258 ~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~---~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~-------- 324 (643)
+...++++++|..|++.+|+-|+|-. .++ .++.++.+.-|+-|--- -||-.--+-|..
T Consensus 17 ~~~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGhMNVLLAEA~ 87 (186)
T 2bru_C 17 EITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFG---------IHPVAGRLPGHMNVLLAEAK 87 (186)
T ss_dssp ---CHHHHHHHHHCSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEE---------ECSSSSSSSSTHHHHHHHHT
T ss_pred ecCHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEE---------eccccccCCCcceEEEEecC
Confidence 34567889999999999999999865 344 44555556667776221 133311111110
Q ss_pred -------CcHHHHHhhhcCCEEEEecCc
Q 040733 325 -------GTVYANYAVNECDLLLAAGVR 345 (643)
Q Consensus 325 -------~~~~~~~~l~~aDlvL~vG~~ 345 (643)
--...|.-+.+.|++|++|..
T Consensus 88 VPYd~v~EMdeIN~df~~tDv~lVIGAN 115 (186)
T 2bru_C 88 VPYDIVLEMDEINDDFADTDTVLVIGAN 115 (186)
T ss_dssp CCTTTEEESCCCHHHHHHCSEEEECBCG
T ss_pred CCHHHHhhHHHHhcccccCCEEEEeccc
Confidence 011335667899999999975
No 106
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=88.71 E-value=0.42 Score=48.09 Aligned_cols=69 Identities=30% Similarity=0.472 Sum_probs=47.5
Q ss_pred HHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+...++++|++|++|+++.-+....+... ...+++|.|+.++..++. ...++.|.+|+.++++. .+.|.
T Consensus 210 a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~~~-~~~d~~i~g~a~~vl~~-~~~l~ 280 (290)
T 3u31_A 210 AEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITN-KMSDYHVCAKFSELTKV-ANILK 280 (290)
T ss_dssp HHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTTTT-TTCSEEEESCGGGHHHH-HHHHH
T ss_pred HHHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCCCC-ccceEEEECCHHHHHHH-HHHHh
Confidence 44567899999999999864433332222 245789999998877643 23688999999998763 33443
No 107
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=88.63 E-value=1.9 Score=47.66 Aligned_cols=125 Identities=15% Similarity=0.129 Sum_probs=80.6
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-. .+.-+|.|.+.+. + ++++++-=| |....++.+.+|...++|+++|.-+-.....- .
T Consensus 42 i~~i~~~~E~---~Aa~~A~Gyar~t-g-~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~--------~ 108 (568)
T 2wvg_A 42 MEQVYCCNEL---NCGFSAEGYARAK-G-AAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHA--------A 108 (568)
T ss_dssp SEEEECSSHH---HHHHHHHHHHHHH-S-CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTT--------T
T ss_pred ceEeccCcHH---HHHHHHHHHHHhh-C-CeEEEEeCCCCHHHHHHHHHHHhhhCCCEEEEeCCCChhHhc--------c
Confidence 4555543322 2556777877765 3 666666444 44445889999999999999999876542210 0
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSYQ 617 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~~ 617 (643)
+...+...|. ....|..++.+.+-...+++++++++...+++|+ ...||+.|+++.|-.
T Consensus 109 ~~~~~~~~g~-----~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv~ 171 (568)
T 2wvg_A 109 GHVLHHALGK-----TDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIA 171 (568)
T ss_dssp TCBCTTSCSS-----SCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGGT
T ss_pred Ccceeeeccc-----cchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhHh
Confidence 0000010111 1224789999999999999999988776666554 446999999998754
No 108
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=88.52 E-value=1.7 Score=48.06 Aligned_cols=149 Identities=11% Similarity=0.093 Sum_probs=90.1
Q ss_pred HHHHHHHHHH-HCCCCEEEEccCCCcHHHHHHHhhC--CCeEEec---CChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 72 GADIIVEALE-RQGVTTVFAYPGGASIEIHQSLTRS--NIRSILP---RHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 72 ~a~~lv~~L~-~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~---~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
..+.|.+.|. ..+ .++..-|+..+.+...+... +-+++.. -.-..+.-+|.|.+.+.+++.+|++ |=|..
T Consensus 380 ~~~~l~~~l~~~~~--~iv~~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala~~~~vv~i~--GDGsf 455 (568)
T 2c31_A 380 SLGVVRDFMLANPD--ISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAVTGKPVIAVE--GDSAF 455 (568)
T ss_dssp HHHHHHHHHHHCCS--SEEEEESSHHHHHHHHHCCCCSTTCEEESTTTTCSSCHHHHHHHHHHHHCSCEEEEE--EHHHH
T ss_pred HHHHHHHHhcCCCC--eEEEECChhHHHHHHHHhcccCCCeEEcCCCCccccccHHHHHHHHhCCCCcEEEEE--cchHh
Confidence 4444555552 222 34444466555554443221 1223321 1122356778888877778777765 44333
Q ss_pred H-HHHHHHHhhhCCCCEEEEeCCCccc--ccCC----CC-----CCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHH
Q 040733 146 N-IMTGLMDAYSDSIPILAITGQVSQK--LLGT----DA-----FQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFI 213 (643)
Q Consensus 146 N-~~~gl~~A~~~~vPvlvItg~~~~~--~~g~----~~-----~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~ 213 (643)
. .+..|..|...+.|+++|.-+.... .... +. .+..|...+.+.+--..+++.+++++.+.+++|+.
T Consensus 456 ~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~- 534 (568)
T 2c31_A 456 GFSGMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDMMMEAFGGKGYVANTPAELKAALEEAVA- 534 (568)
T ss_dssp HTTGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCCTTBCCCCCHHHHHHTTTCEEEEESSHHHHHHHHHHHHH-
T ss_pred hccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcccCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHh-
Confidence 3 3678999999999998887654431 1100 00 23457788888886667788888888888887764
Q ss_pred hhcCCCCeEEEEcccc
Q 040733 214 ATSGRPGPVLIDIPVD 229 (643)
Q Consensus 214 A~s~~~GPV~i~iP~D 229 (643)
..||+.|++..|
T Consensus 535 ----~~~p~liev~~~ 546 (568)
T 2c31_A 535 ----SGKPCLINAMID 546 (568)
T ss_dssp ----HTSCEEEEEEBC
T ss_pred ----CCCCEEEEEEec
Confidence 248999999876
No 109
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=88.51 E-value=0.98 Score=49.52 Aligned_cols=119 Identities=11% Similarity=-0.041 Sum_probs=81.4
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecC-ccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGD-GSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GD-Gsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~ 552 (643)
.-+++....- ..+.-+|.|.+.+. +++.++++-= -+....++.|.+|...++|+++|.-+-....+
T Consensus 38 ~i~~i~~~~E---~~Aa~~A~Gyar~t-g~~~v~~~tsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~--------- 104 (528)
T 1q6z_A 38 DFRYILALQE---ACVVGIADGYAQAS-RKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMI--------- 104 (528)
T ss_dssp TCEEEECSSH---HHHHHHHHHHHHHH-TSCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHH---------
T ss_pred cCcEEEECcH---HHHHHHHHHHHHHh-CCCEEEEEcCChHHHHHHHHHHHHhhcCCCEEEEeCCCccccc---------
Confidence 3556654432 22566788887776 5666665543 34555689999999999999999876543110
Q ss_pred cccccccccCCCCCCCCCC-CCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 553 EANRANSFLGDPLRKSEIF-PDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 553 ~~~~~~~~~g~p~~~~~~~-~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
+.. . ... .|...+.+.+-....++++++++...+++|+. .+||+.|+++.|-.
T Consensus 105 ~~~----~--------~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~~ 163 (528)
T 1q6z_A 105 GVE----A--------LLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDW 163 (528)
T ss_dssp TTT----C--------TTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGGT
T ss_pred CCC----c--------ccccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhh
Confidence 000 0 123 58888888888888999999888777777653 46899999998754
No 110
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=88.20 E-value=1.6 Score=48.34 Aligned_cols=125 Identities=17% Similarity=0.127 Sum_probs=80.1
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....- ..+.-+|.|.+.+.. +.++++-=| |....++.|.+|...++|+++|.-+-....+- .
T Consensus 42 i~~v~~~~E---~~Aa~~A~Gyar~tg--~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~--------~ 108 (566)
T 2vbi_A 42 MKQIYCCNE---LNCGFSAEGYARSNG--AAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQG--------T 108 (566)
T ss_dssp SEEEECSSH---HHHHHHHHHHHHHHS--CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTT--------T
T ss_pred CeEEeeCcH---HHHHHHHHHHHhhcC--CeEEEEeCCCCHHHHHHHHHHHHhhCCCEEEEECCCChHHhc--------c
Confidence 455554332 225667788777763 556555433 34445899999999999999999876532210 0
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSYQ 617 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~~ 617 (643)
+...+...|. ....|...+.+.+-...+++++++++...+++|+ ...||+.|+++.|-.
T Consensus 109 ~~~~~~~~g~-----~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d~~ 171 (566)
T 2vbi_A 109 GHILHHTIGK-----TDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPAYLDIACNIA 171 (566)
T ss_dssp TCBCTTSCSS-----SCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHTCCEEEEEETTTT
T ss_pred CceeeeeccC-----cchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhhc
Confidence 0000000111 1224789999999888999999887666666554 446999999998864
No 111
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=88.14 E-value=2.2 Score=47.03 Aligned_cols=114 Identities=19% Similarity=0.121 Sum_probs=72.3
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. + +.++++-=| |....++.+.+|...++|+++|.-+-.... +. .+ ...+...|.
T Consensus 54 Aa~~A~Gyar~t-g-~~v~~~TsGpG~~N~~~gia~A~~~~~Pll~itg~~~~~~-----~~--~~-~~~~~~~g~---- 119 (563)
T 2vk8_A 54 AAYAADGYARIK-G-MSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISA-----QA--KQ-LLLHHTLGN---- 119 (563)
T ss_dssp HHHHHHHHHHHH-S-CEEEEEETTHHHHHHHHHHHHHHHHTCCEEEEEEECCHHH-----HH--TT-CCCTTSCSS----
T ss_pred HHHHHHHHHHhh-C-CcEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEECCCChHH-----hh--cc-cccccccCC----
Confidence 456777877665 3 455554333 444458899999999999999997644211 11 01 111111111
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHH----HHhCCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQL----MLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~----al~~~gp~lIeV~v~~~ 617 (643)
...-|+.++.+.+-...+++++++++.+.+++ +....||+.|+++.|-.
T Consensus 120 -~~~q~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d~~ 172 (563)
T 2vk8_A 120 -GDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLV 172 (563)
T ss_dssp -SCSSHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHHHTSCEEEEEETTGG
T ss_pred -cchHHHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhhh
Confidence 11126788999998888999997665555554 44446999999998753
No 112
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=88.07 E-value=0.94 Score=50.31 Aligned_cols=105 Identities=18% Similarity=0.161 Sum_probs=71.6
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.||++==| |..-.+..+.+|...++|+++|.-+-...- . +. +
T Consensus 61 Aa~aAdGyAr~t-G~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~p~~~-~-------------g~--~----- 118 (578)
T 3lq1_A 61 AGFFALGLAKAS-KRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHEL-R-------------NV--G----- 118 (578)
T ss_dssp HHHHHHHHHHHH-CCCEEEEECSSHHHHTTHHHHHHHHHTTCCEEEEEEECCGGG-T-------------TS--S-----
T ss_pred HHHHHHHHHHhh-CCCEEEEECCchhhhhhhHHHHHHHhcCCCeEEEeCCCCHHh-h-------------cC--C-----
Confidence 445777877776 56777766544 455568999999999999999987533210 0 00 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHH-----------HHHHHHHHh-CCCcEEEEEEeC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDV-----------RAAIQLMLE-TPGPYLLDVMVS 615 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL-----------~~al~~al~-~~gp~lIeV~v~ 615 (643)
.....|..++.+.+-...+++++++++ ++|++.|.. .+||+.|+++.|
T Consensus 119 ~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 119 APQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLR 178 (578)
T ss_dssp CTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEECC
T ss_pred CCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECccC
Confidence 124568888888888888899887653 344444443 479999999986
No 113
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=87.49 E-value=2.2 Score=46.86 Aligned_cols=123 Identities=17% Similarity=0.121 Sum_probs=75.2
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-. .+.-+|.|.+.+. + +.++++ ---+....++.+.+|...++|+++|.-+-...- +. .+
T Consensus 44 i~~i~~~~E~---~A~~~A~Gyar~t-g-~~v~~~tsGpG~~N~~~gv~~A~~~~~Pll~itg~~p~~~-----~~--~~ 111 (552)
T 1ovm_A 44 ICWVGCANEL---NASYAADGYARCK-G-FAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAA-----QQ--RG 111 (552)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHHH-S-CEEEEEETTHHHHHTHHHHHHHHHTTCCEEEEEEECCHHH-----HH--HT
T ss_pred ceEEeeCcHH---HHHHHHHHHHHhh-C-CcEEEEccCCcHHHHHHHHHHHhhhcCCEEEEECCCCHHH-----Hh--cc
Confidence 4555543321 2566778877776 3 444444 333455568999999999999999998754311 11 01
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHH----HHHHHHHHhCCCcEEEEEEeCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV----RAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL----~~al~~al~~~gp~lIeV~v~~ 616 (643)
. ..+..+|. ...-|+.++.+.+-...+++++ +++ +++++.+....||+.|+++.|-
T Consensus 112 ~-~~~~~~g~-----~~~q~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~~~~GPV~l~iP~d~ 171 (552)
T 1ovm_A 112 E-LLHHTLGD-----GEFRHFYHMSEPITVAQAVLTE-QNACYEIDRVLTTMLRERRPGYLMLPADV 171 (552)
T ss_dssp C-CCTTSCSS-----SCCSHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHTCCEEEEEEHHH
T ss_pred c-ccccccCC-----CcHHHHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHHhCCCCEEEEeehhh
Confidence 1 11111111 1112577888888888899988 555 4555555544699999999863
No 114
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=87.22 E-value=0.8 Score=48.44 Aligned_cols=110 Identities=20% Similarity=0.055 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHh---CCcEEEEEccchhhHHH---HHHHHHhhhCCCCEEEEeCCCcccccCC--CCC-CccCHHHHhhc
Q 040733 119 GIFAAEGYARSS---GTPGVCLVSSGPGVTNI---MTGLMDAYSDSIPILAITGQVSQKLLGT--DAF-QEIPVVEVTRY 189 (643)
Q Consensus 119 A~~~A~Gyar~s---g~~gv~~~t~GpG~~N~---~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~-Q~~d~~~~~~~ 189 (643)
+.-+|.|.|++. +.-.++++..|=|.++- .-++..|..-++|+|+|.-+........ ... -..|...+++.
T Consensus 186 ~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a 265 (407)
T 1qs0_A 186 QFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVG 265 (407)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHH
T ss_pred chhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHH
Confidence 445777777764 22234444456666653 4578888889999888874332111100 001 12344555665
Q ss_pred cceeeeEeC--CcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 190 MTKHNYLVL--DVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 190 ~tk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+--...+|. +++++..++++|+..++.+. ||+.|++-..
T Consensus 266 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 306 (407)
T 1qs0_A 266 CGIASLRVDGNDFVAVYAASRWAAERARRGL-GPSLIEWVTY 306 (407)
T ss_dssp TTCEEEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEEECC
T ss_pred cCCeEEEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEEee
Confidence 544555664 56678888889888877654 8999998654
No 115
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=85.24 E-value=1.8 Score=49.35 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHhCC-----CcEEEE-cCCch--hhHHHHHHHHH-HhCCceeecCCCCCCCCCCCCCccc---ccCCC
Q 040733 257 DELALRQTLKLIVESK-----NPVLCV-GGGCL--NSSEELRKFVG-LTGIPVTCTTMGLGLFPCTDELCLR---MVGMF 324 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak-----rPvIl~-G~g~~--~~~~~l~~lae-~lg~PV~tt~~gkg~~~~~hpl~lG---~~g~~ 324 (643)
-+++++.+++.|++.+ .-+.+. |.+.. .....+.+|++ .+|.+-+.+...... .+...+ ++|..
T Consensus 80 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~Gs~n~~~~~~~c~----~~~~~~~~~~~G~~ 155 (715)
T 2iv2_X 80 WDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVXH----GPSVAGLHQSVGNG 155 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSC----CSSSCSHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCcCcHHHHHHHHHHHHhcCCCcCCCCCccch----hHHHHHHHhhcCCC
Confidence 4778888888887642 234444 44443 23345788998 899875543221111 111111 12211
Q ss_pred CcHHHHHhhhcCCEEEEecCccCcccc---Cccc-cccCCceEEEEcCCcccccCCCCCCeeEe----cCHHHHHHHHHH
Q 040733 325 GTVYANYAVNECDLLLAAGVRFNERMT---SKLE-DFATRAKIVHIDIDSNEIGKVKLPDVSIC----ADAKLVFNRMNM 396 (643)
Q Consensus 325 ~~~~~~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D~~~~L~~L~~ 396 (643)
.......-++++|+||++|+.+.+... ..+. .....+|+|.||+........ ++..+. .|.. ++.+|..
T Consensus 156 ~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~~--Ad~~l~irPGtD~a-L~~al~~ 232 (715)
T 2iv2_X 156 AMSNAINEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARI--ADMHIALKNGSNIA-LLNAMGH 232 (715)
T ss_dssp SCSSCGGGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHT--CSEEECCCTTCHHH-HHHHHHH
T ss_pred CCCCCHhHHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhHh--hCEEeccCCCcHHH-HHHHHHH
Confidence 000012346899999999988632211 1111 112457999999887766543 344333 3444 4444444
Q ss_pred HHh
Q 040733 397 ILE 399 (643)
Q Consensus 397 ~l~ 399 (643)
.+-
T Consensus 233 ~ii 235 (715)
T 2iv2_X 233 VII 235 (715)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 116
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=85.06 E-value=1 Score=46.89 Aligned_cols=107 Identities=21% Similarity=0.213 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHh---CCcEEEEEccchhhHHH---HHHHHHhhhCCCCEEEEeCCCcccccCCC-C--CCccCHHHHhhc
Q 040733 119 GIFAAEGYARSS---GTPGVCLVSSGPGVTNI---MTGLMDAYSDSIPILAITGQVSQKLLGTD-A--FQEIPVVEVTRY 189 (643)
Q Consensus 119 A~~~A~Gyar~s---g~~gv~~~t~GpG~~N~---~~gl~~A~~~~vPvlvItg~~~~~~~g~~-~--~Q~~d~~~~~~~ 189 (643)
+.-+|.|.|++. |.-.++++..|=|+++- .-++..|...+.|+|+|.-+.. ..++.. . ....|... +.
T Consensus 145 ~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~-~g~~t~~~~~~~~~~~~~--ra 221 (365)
T 2ozl_A 145 QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNR-YGMGTSVERAAASTDYYK--RG 221 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECS-EETTEEHHHHCSCCCGGG--TT
T ss_pred hhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCC-cccCCCcccccCCCCHHH--Hh
Confidence 445677777664 22344444557777663 4478888889999999984331 111110 0 00111111 11
Q ss_pred cceeeeEeC--CcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 190 MTKHNYLVL--DVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 190 ~tk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+--...+|. +++++..++++|+..+..+. ||+.|++-..
T Consensus 222 ~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~-gP~lIe~~t~ 262 (365)
T 2ozl_A 222 DFIPGLRVDGMDILCVREATRFAAAYCRSGK-GPILMELQTY 262 (365)
T ss_dssp TTSCEEEEETTCHHHHHHHHHHHHHHHHTTC-CCEEEEEECC
T ss_pred CCCCEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCEEEEEEee
Confidence 111234454 67888888999988887765 9999998654
No 117
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=85.06 E-value=1.5 Score=39.72 Aligned_cols=131 Identities=17% Similarity=0.239 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCch--hhH---HHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCC-----------
Q 040733 260 ALRQTLKLIVESKNPVLCVGGGCL--NSS---EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGM----------- 323 (643)
Q Consensus 260 ~i~~~~~~L~~AkrPvIl~G~g~~--~~~---~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~----------- 323 (643)
..++++++|..|++.+|+-|+|-. .++ .++.++.+.-|+-|--- -||-.--+-|.
T Consensus 11 ~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGhMNVLLAEA~VP 81 (184)
T 1d4o_A 11 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFG---------IHPVAGRMPGQLNVLLAEAGVP 81 (184)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEE---------ECTTCSSSTTHHHHHHHHHTCC
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEE---------eccccccCCCcceEEEEEecCC
Confidence 467788999999999999999865 444 44555555567766221 14432111120
Q ss_pred ----CCcHHHHHhhhcCCEEEEecCccC-------cccc--Cc---cccccCCceEEEEcCC--c--ccccC--CC-CCC
Q 040733 324 ----FGTVYANYAVNECDLLLAAGVRFN-------ERMT--SK---LEDFATRAKIVHIDID--S--NEIGK--VK-LPD 380 (643)
Q Consensus 324 ----~~~~~~~~~l~~aDlvL~vG~~~~-------~~~t--~~---~~~~~~~~~iI~Id~d--~--~~i~~--~~-~~~ 380 (643)
.-....|.-+.+.|++|++|..-. +..+ .+ ++.|.. .++|.+--. + .-+.. .| +-+
T Consensus 82 Yd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~kA-k~ViV~KRsm~~GyAgv~NpLF~~~nt 160 (184)
T 1d4o_A 82 YDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKS-KQVIVMKRSLGVGYAAVDNPIFYKPNT 160 (184)
T ss_dssp GGGEEEHHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGS-SCEEEEESSSCCCTTCCCCGGGGSTTE
T ss_pred HHHHHhHHHHhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehhhC-CEEEEEECCCCCCcCCCcCcceecCCc
Confidence 011345667789999999997521 0001 01 112222 245544211 1 11111 11 234
Q ss_pred eeEecCHHHHHHHHHHHHhh
Q 040733 381 VSICADAKLVFNRMNMILES 400 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~l~~ 400 (643)
.-+.||++..++.|...++.
T Consensus 161 ~MlfGDAK~~~~~l~~~l~~ 180 (184)
T 1d4o_A 161 AMLLGDAKKTCDALQAKVRE 180 (184)
T ss_dssp EEEESCHHHHHHHHHHHHHT
T ss_pred eEEeccHHHHHHHHHHHHHH
Confidence 55679999999999887764
No 118
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=82.14 E-value=1.4 Score=46.38 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=59.5
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKS 568 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~ 568 (643)
++.+|+|++++. .|.++...|.|-.+| ...|.++...++|+++++.+..+.+.-...+ . +
T Consensus 76 a~~~a~Gaa~aG-~r~~~~ts~~G~~~~-~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~----------~--------~ 135 (395)
T 1yd7_A 76 SIAAAIGASWAG-AKAMTATSGPGFSLM-QENIGYAVMTETPVVIVDVQRSGPSTGQPTL----------P--------A 135 (395)
T ss_dssp HHHHHHHHHHTT-CCEEEEEETTHHHHH-TTTCC----CCCCEEEEEEC-------------------------------
T ss_pred HHHHHHHHHHhC-CcEEEEeCchHHHHH-HHHHHHHHhcCCCEEEEEeeCCCCCCCCCcc----------c--------c
Confidence 688899999886 567777778886654 3446677788999999988776543110000 0 0
Q ss_pred CCCCCHHHHHh--HCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEE
Q 040733 569 EIFPDMLKFAE--ACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDV 612 (643)
Q Consensus 569 ~~~~d~~~lA~--a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV 612 (643)
....-...++. .+|+..+...+++|..+.+.+|+ ..+.|+++..
T Consensus 136 ~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~ 185 (395)
T 1yd7_A 136 QGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLT 185 (395)
T ss_dssp -------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred hhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEc
Confidence 00000112222 35788888899999988888877 4568988765
No 119
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=82.04 E-value=4.1 Score=44.92 Aligned_cols=123 Identities=16% Similarity=0.112 Sum_probs=76.5
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....- ..+.-+|.|.+.+. + +.++++ -.-+....++.+.+|...++|+++|.-+..... +.. +
T Consensus 64 i~~i~~~~E---~~A~~~A~GyAr~t-G-~~v~~~tsGpG~~N~~~gi~~A~~~~vPlv~itg~~~~~~-----~~~--~ 131 (570)
T 2vbf_A 64 MKWIGNANE---LNASYMADGYARTK-K-AAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKV-----QND--G 131 (570)
T ss_dssp CEEEECSSH---HHHHHHHHHHHHHH-S-CEEEEEETTHHHHHHHHHHHHHHHTTCCEEEEEEECCHHH-----HHH--T
T ss_pred CeEECcCcH---HHHHHHHHHHHHHh-C-CeEEEEcCCCCHHHHHHHHHHHhhhCCCEEEEeCCCCHHH-----hhc--c
Confidence 455554332 22566788877665 3 555544 444555568999999999999999997765321 110 1
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSY 616 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~ 616 (643)
....+. .++ ....|+..+.+.+-...+++++ +++...+++++ ...||+.|+++.|-
T Consensus 132 ~~~~~~-~~~-----~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d~ 191 (570)
T 2vbf_A 132 KFVHHT-LAD-----GDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKERKPVYINLPVDV 191 (570)
T ss_dssp CCCTTS-CSS-----SCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHCCCEEEEEEHHH
T ss_pred ccceee-ccc-----cchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCCCCEEEEcchhh
Confidence 111111 110 1122467888888888899988 77666666544 45699999999864
No 120
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=81.93 E-value=2.9 Score=48.13 Aligned_cols=125 Identities=11% Similarity=0.030 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHhCC--CcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhh
Q 040733 257 DELALRQTLKLIVESK--NPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAV 333 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak--rPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l 333 (643)
-+++++.+++.|++.+ +..++.|.... ...-.+.+|++.+|.+.+... ++.. +.. . +..+... .-+
T Consensus 322 WdeAl~~ia~~L~~i~~~~i~~~~s~~~t~E~~~~~~kl~~~lGt~n~d~~-~~~~----~~~-~---~~~~~~~--~di 390 (783)
T 3i9v_3 322 WEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQ-GRTA----APA-S---LFPPASL--EDL 390 (783)
T ss_dssp HHHHHHHHHHHHHTCCTTSEEEEECTTCCTTHHHHHHHHHHHTTCSCEEET-TCCS----SCG-G---GSCBCCH--HHH
T ss_pred HHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHHHHHHHHHhCCCcccCC-chhh----hhh-c---cCCCCCH--HHH
Confidence 4788999999998865 45555655444 445568899999998766433 1111 000 1 1111111 236
Q ss_pred hcCCEEEEecCccCcccc---Cccccc--------------------------cCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 334 NECDLLLAAGVRFNERMT---SKLEDF--------------------------ATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~t---~~~~~~--------------------------~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+++|+||++| .+.+... .++..+ ....|+|.||+....+.+ .++..+.
T Consensus 391 ~~ad~Il~~G-Np~~~~P~~~~rlr~a~~~~~~~~~~~~g~~~~~~~v~~~~~~~g~klividPr~t~ta~--~Ad~~l~ 467 (783)
T 3i9v_3 391 LQADFALVLG-DPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMK--WAAIHEV 467 (783)
T ss_dssp HHCSCEEEES-CHHHHSTHHHHHHHHHHTTCCCCCCBTTBSCSSCTTCCTTCCCCTTSEEEEESSCCGGGT--TCSEEEE
T ss_pred hhCCEEEEeC-ChhHhCcHHHHHHHHHHHhcccchhhcccccchhhhhhhhhhcCCCEEEEEeCCcchhhH--hhcceEe
Confidence 7999999999 7532110 011000 245689999998887765 3444443
Q ss_pred ---cCHHHHHHHHH
Q 040733 385 ---ADAKLVFNRMN 395 (643)
Q Consensus 385 ---~D~~~~L~~L~ 395 (643)
++-.+++.+|.
T Consensus 468 i~PGtD~all~al~ 481 (783)
T 3i9v_3 468 HRPGEEREILLALL 481 (783)
T ss_dssp CCSSCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHH
Confidence 33334444444
No 121
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=79.55 E-value=3.5 Score=42.42 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=68.9
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEE-ecCccccCCHHHHHH-HH--------HhCCCeEEEEEeCCCchh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDI-DGDGSFIMNLQELAA-IK--------AENIPVKILLINNQYLGM 543 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i-~GDGsf~m~~~eL~T-a~--------~~~lpv~ivV~NN~~~g~ 543 (643)
|.+++..+- +=-..++.|.|++++. -++++.+ -+|.. +.....|.. +. ..++|+++++- ++..|
T Consensus 61 p~r~~d~gI--aE~~~v~~a~G~A~~G-~rp~~~~~f~~F~-~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~-~G~~g- 134 (341)
T 2ozl_B 61 DKRIIDTPI--SEMGFAGIAVGAAMAG-LRPICEFMTFNFS-MQAIDQVINSAAKTYYMSGGLQPVPIVFRGP-NGASA- 134 (341)
T ss_dssp TTTEEECCS--CHHHHHHHHHHHHHTT-CEEEEECSSGGGG-GGGHHHHHTTTTTHHHHTTSSCCCCCEEEEE-CSCCS-
T ss_pred CCcEEECch--hHHHHHHHHHHHHHCC-CEEEEEeccHHHH-HHHHHHHHHHHHHHHhhccccCCCCEEEEEc-CcCCC-
Confidence 566665431 1112577888888874 4555554 66666 334444443 22 26899888776 44222
Q ss_pred hHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEE
Q 040733 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDV 612 (643)
Q Consensus 544 ~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV 612 (643)
++...| ....| .-+..--|+..+...++.|+...++.+++.++|++|-.
T Consensus 135 ---------~~G~tH----------s~~~e-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i~~ 183 (341)
T 2ozl_B 135 ---------GVAAQH----------SQCFA-AWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLE 183 (341)
T ss_dssp ---------SCCGGG----------CCCCH-HHHHTSTTCEEECCCSHHHHHHHHHHHHHSSSCEEEEE
T ss_pred ---------CCCcch----------hhHHH-HHhccCCCCEEEEeCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 011111 12334 33444448888899999999999999999899998754
No 122
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=79.37 E-value=6.5 Score=40.85 Aligned_cols=111 Identities=14% Similarity=0.047 Sum_probs=65.6
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEE-ecCccccCCHHHHHH-HHHh--------CCCeEEEEEeCCCchh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDI-DGDGSFIMNLQELAA-IKAE--------NIPVKILLINNQYLGM 543 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i-~GDGsf~m~~~eL~T-a~~~--------~lpv~ivV~NN~~~g~ 543 (643)
|.+++..+- +=-..++.|.|++++. -++++.+ .+|.. +.....|.+ +... ++|+++++.+-++.+
T Consensus 97 p~r~~d~gI--aE~~~v~~a~G~A~~G-~rpv~~~tf~~Fl-~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g- 171 (369)
T 1ik6_A 97 PERVIDTPL--NEGGILGFAMGMAMAG-LKPVAEIQFVDFI-WLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTR- 171 (369)
T ss_dssp TTTEEECCS--CHHHHHHHHHHHHHTT-CEEEEECCCC-----CCHHHHHHHHHHHHC------CCCCEEEEEECC----
T ss_pred CCcEEECcc--cHHHHHHHHHHHHHCC-CeeEEEecchhHH-HHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCC-
Confidence 566766431 1112577888888874 4566655 78855 445555544 4433 999888776443211
Q ss_pred hHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 544 ~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
+.. .+...+..+.++. |+..+...++.|+...++++++.++|++|-
T Consensus 172 ----------~g~------------~hs~~~~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~~~~Pv~i~ 218 (369)
T 1ik6_A 172 ----------GGL------------YHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFL 218 (369)
T ss_dssp ------------------------------HHHHHHTCTTCEEECCCSHHHHHHHHHHHHHSSSCEEEE
T ss_pred ----------CCc------------cccccHHHHHcCCCCcEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 000 1112223444443 888889999999999999999989999883
No 123
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=78.71 E-value=4.7 Score=42.43 Aligned_cols=109 Identities=19% Similarity=0.112 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhC---CcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhhcc
Q 040733 119 GIFAAEGYARSSG---TPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRYM 190 (643)
Q Consensus 119 A~~~A~Gyar~sg---~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~~~ 190 (643)
+.-+|.|.|++.. +-.++++..|=|.++ ..-++..|..-+.|+|+|.-+......+. ..+...|....++.+
T Consensus 167 ~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~ 246 (400)
T 2bfd_A 167 QIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246 (400)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGG
T ss_pred cccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHc
Confidence 4456777776542 223334445665554 23567777788899999985442111110 011123455566655
Q ss_pred ceeeeEeC--CcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 191 TKHNYLVL--DVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 191 tk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
--...+|. +++++..++++|+..++.+. ||+.|++-.
T Consensus 247 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~-~P~lIe~~t 285 (400)
T 2bfd_A 247 GIMSIRVDGNDVFAVYNATKEARRRAVAEN-QPFLIEAMT 285 (400)
T ss_dssp TCEEEEEETTCHHHHHHHHHHHHHHHHHHT-CCEEEEEEC
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCEEEEEEe
Confidence 44444554 56678888888888776554 899999755
No 124
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=77.10 E-value=5.2 Score=40.99 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=68.4
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEE-ecCccccCCHHHHHH-HH--H------hCCCeEEEEEeCCCchh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDI-DGDGSFIMNLQELAA-IK--A------ENIPVKILLINNQYLGM 543 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i-~GDGsf~m~~~eL~T-a~--~------~~lpv~ivV~NN~~~g~ 543 (643)
|.+++..+- +=-..++.|.|++++. -++++.+ .+|+. +.....|.+ +. + .++|+++++-+ ++ +
T Consensus 51 p~r~~~~gi--sE~~~~~~a~G~A~~G-~rp~~~~t~~~F~-~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-~g-~- 123 (338)
T 1qs0_B 51 KSRVFDAPI--SESGIVGTAVGMGAYG-LRPVVEIQFADYF-YPASDQIVSEMARLRYRSAGEFIAPLTLRMPC-GG-G- 123 (338)
T ss_dssp TTTEEECCS--CHHHHHHHHHHHHHHT-CEEEEECSCGGGC-GGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEE-CC-S-
T ss_pred CCcEEEccc--cHHHHHHHHHHHHhCC-CEEEEEeccHhHH-HHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeC-CC-C-
Confidence 556665431 1112577788888874 3455444 67765 344444432 22 2 35998887644 32 1
Q ss_pred hHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEE
Q 040733 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDV 612 (643)
Q Consensus 544 ~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV 612 (643)
.+...| ...-|..-+...-|+..+...++.|+...++.+++.++|++|--
T Consensus 124 ---------~~G~th----------~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~~~~Pv~i~~ 173 (338)
T 1qs0_B 124 ---------IYGGQT----------HSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLE 173 (338)
T ss_dssp ---------SSCCSS----------SSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHHSSSCEEEEE
T ss_pred ---------CCCccc----------ccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 000001 11236655554459999999999999999999999899999843
No 125
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=73.83 E-value=1.3 Score=50.52 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHhCC------CcEEEEcCCch-hhHHHHHHHHHH-hCCceeecCCCCCCCC--CCCCCcccccCCCCc
Q 040733 257 DELALRQTLKLIVESK------NPVLCVGGGCL-NSSEELRKFVGL-TGIPVTCTTMGLGLFP--CTDELCLRMVGMFGT 326 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak------rPvIl~G~g~~-~~~~~l~~lae~-lg~PV~tt~~gkg~~~--~~hpl~lG~~g~~~~ 326 (643)
-+++++.+++.|++.+ ...++.|+... .....+.+|++. +|.+-+........-+ .......|......+
T Consensus 81 WdeAl~~ia~~l~~~~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~~gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 160 (723)
T 2nap_A 81 WDEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGT 160 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEEECTTSCHHHHHHHHHHHHHTSCCCCEEEGGGGTTHHHHHHHHHHHSSCSCSSC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcccchhhHHHHHHHHHhcCCCceeCCCccccchHhHHHHhccCCCCCCCC
Confidence 4788888888887643 34444444333 233456789987 8877544221000000 000011111000111
Q ss_pred HHHHHhhhcCCEEEEecCccCcccc---Cccc-cccC--CceEEEEcCCcccccCCCCCCeeEe----cCHHHHHHHHHH
Q 040733 327 VYANYAVNECDLLLAAGVRFNERMT---SKLE-DFAT--RAKIVHIDIDSNEIGKVKLPDVSIC----ADAKLVFNRMNM 396 (643)
Q Consensus 327 ~~~~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~--~~~iI~Id~d~~~i~~~~~~~~~i~----~D~~~~L~~L~~ 396 (643)
..-++++|+||++|+.+.+... ..+. .... ..|+|.||+........ ++..+. .|.. ++.+|..
T Consensus 161 ---~~d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~--Ad~~l~irPGtD~a-l~~al~~ 234 (723)
T 2nap_A 161 ---YADIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRI--ADMHVAFRPGTDLA-FMHSMAW 234 (723)
T ss_dssp ---GGGGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGG--CSEEECCCTTTHHH-HHHHHHH
T ss_pred ---hhhHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhh--hCeeeecCCCcHHH-HHHHHHH
Confidence 1236899999999998643211 1111 1122 67999999888776553 344443 3444 4444444
Q ss_pred HH
Q 040733 397 IL 398 (643)
Q Consensus 397 ~l 398 (643)
.+
T Consensus 235 ~i 236 (723)
T 2nap_A 235 VI 236 (723)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 126
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=72.05 E-value=13 Score=38.53 Aligned_cols=109 Identities=25% Similarity=0.236 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHh---CCcEEEEEccchhhHHHH---HHHHHhhhCCCCEEEEeCCCcccccCCC---CCCccCHHHHhhc
Q 040733 119 GIFAAEGYARSS---GTPGVCLVSSGPGVTNIM---TGLMDAYSDSIPILAITGQVSQKLLGTD---AFQEIPVVEVTRY 189 (643)
Q Consensus 119 A~~~A~Gyar~s---g~~gv~~~t~GpG~~N~~---~gl~~A~~~~vPvlvItg~~~~~~~g~~---~~Q~~d~~~~~~~ 189 (643)
+.-.|.|.|.+. +.-.++++..|=|.++.- -++..|..-+.|+|+|.-+... .+... .....|...+++.
T Consensus 149 ~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~~d~~~~a~a 227 (367)
T 1umd_A 149 HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFY-AISVDYRHQTHSPTIADKAHA 227 (367)
T ss_dssp THHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSE-ETTEEHHHHCSSSCSGGGGGG
T ss_pred hhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCe-eeccChhhccCCCCHHHHHHH
Confidence 345566666542 222334444566665422 2577888899999998854432 11110 0112344555555
Q ss_pred cceeeeEeCC--cCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 190 MTKHNYLVLD--VDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 190 ~tk~~~~v~~--~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+--..+.|.. +.++..++++|++.+..+ .||+.|++-..
T Consensus 228 ~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~-~gP~lIe~~t~ 268 (367)
T 1umd_A 228 FGIPGYLVDGMDVLASYYVVKEAVERARRG-EGPSLVELRVY 268 (367)
T ss_dssp TTSCEEEEETTCHHHHHHHHHHHHHHHHTT-CCCEEEEEECC
T ss_pred cCCcEEEeCCCCHHHHHHHHHHHHHHHHhc-CCCEEEEEEee
Confidence 5433445543 345667778888887765 48999998543
No 127
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=69.77 E-value=2 Score=50.84 Aligned_cols=138 Identities=13% Similarity=0.052 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHhC------CCcEEEEcCCchh--hHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHH
Q 040733 257 DELALRQTLKLIVES------KNPVLCVGGGCLN--SSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A------krPvIl~G~g~~~--~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~ 328 (643)
-+++++.+++.|.+. ++..++.|.+..+ ....+.+|+..+|-+.+......+......+...|.... ...
T Consensus 163 WdeAl~~IA~~l~~i~~~~Gp~~i~~~~~~~~~~~~~~~~~~rf~~~lG~~n~~~~~~~~~~~~a~~~~~G~~~~-~~~- 240 (976)
T 2ivf_A 163 WDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAWGAGFRMTYLMDGVSPDINVDIGDTYMGAFHTFGKMHM-GYS- 240 (976)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGEEECCCCSTTCHHHHHHHHHHHHHHTCBEECHHHHHTCCCHHHHHHHSCCCC-BCC-
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEecCCccchHHHHHHHHHHHHhCCcccCccccccchhhhhhheecCCCC-CCC-
Confidence 467788888777653 3444445555542 224578999999988654211101111111222222101 111
Q ss_pred HHHhhhcCCEEEEecCccCccccCccccc----cCCceEEEEcCCcccccCCCCCCeeEe----cCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLEDF----ATRAKIVHIDIDSNEIGKVKLPDVSIC----ADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~~----~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D~~~~L~~L~~~l~ 399 (643)
..-+.++|+||++|+...+.....+..+ ...+|+|.||+...+..+ .+|..|. .|+..++..+...++
T Consensus 241 -~~D~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ta~--~AD~wl~irPGTD~Al~~am~~~ii~ 316 (976)
T 2ivf_A 241 -ADNLLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPTTP--AADLHVPVRVGSDAAFWLGLSQVMID 316 (976)
T ss_dssp -GGGGGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTTGG--GCSEEECCCTTCHHHHHHHHHHHHHH
T ss_pred -hhhHhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcchh--hcCeEeccCCCcHHHHHHHHHHHHHH
Confidence 1237899999999998643222111111 235799999998877654 3444443 366555444333333
No 128
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=60.47 E-value=4.4 Score=47.93 Aligned_cols=138 Identities=12% Similarity=0.102 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhCC-----------------CcEEEEcCCc-h-hhHHHHHHHHHHhCCceeecCCCC--CCCCCCCC
Q 040733 257 DELALRQTLKLIVESK-----------------NPVLCVGGGC-L-NSSEELRKFVGLTGIPVTCTTMGL--GLFPCTDE 315 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak-----------------rPvIl~G~g~-~-~~~~~l~~lae~lg~PV~tt~~gk--g~~~~~hp 315 (643)
-+++++.+++.|++.+ .-+.+.|++. . ...-.+.+|++.+|.+-+.+.... +..-..+.
T Consensus 88 WdeAl~~ia~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~ 167 (977)
T 1h0h_A 88 WDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIXHSATVAALA 167 (977)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEEECTTSCEEEEECSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECTHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccccCceEEEEeCCCcccHHHHHHHHHHHHcCCCccccccccccchHHHHHH
Confidence 4778888888887642 1244445432 2 233446889998887754321100 00000000
Q ss_pred CcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccc----cccCCceEEEEcCCcccccCCCCCCeeEe----cCH
Q 040733 316 LCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLE----DFATRAKIVHIDIDSNEIGKVKLPDVSIC----ADA 387 (643)
Q Consensus 316 l~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~----~~~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D~ 387 (643)
..+|......+ ..-+.++|+||++|+...+.....+. .....+|+|.||+....... .+|..|. .|+
T Consensus 168 ~~~G~~~~~~~---~~D~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t~ta~--~AD~~l~irPGTD~ 242 (977)
T 1h0h_A 168 ESYGRGAMTNH---WIDLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTST--KCDLYAPLRSGSDI 242 (977)
T ss_dssp HHHSCCSCSSC---TGGGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGG--GCSEEECCCTTCHH
T ss_pred HHhCCCCCCCC---HHHHhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCCchhH--HhCeeeccCCCchH
Confidence 11111001111 12378999999999886432211111 11245799999987776554 3444433 466
Q ss_pred HHHHHHHHHHHh
Q 040733 388 KLVFNRMNMILE 399 (643)
Q Consensus 388 ~~~L~~L~~~l~ 399 (643)
..++..+...++
T Consensus 243 AL~~am~~~ii~ 254 (977)
T 1h0h_A 243 AFLNGMTKYILE 254 (977)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555444443333
No 129
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=58.53 E-value=89 Score=30.22 Aligned_cols=153 Identities=7% Similarity=0.001 Sum_probs=80.2
Q ss_pred CCcHHHHHHHHHHHCC--CCEEEEccCCC--------cHHHHHHHhhCCCeEEe--cCCh-hHHHHHHHHHHHHhCCcEE
Q 040733 69 PRKGADIIVEALERQG--VTTVFAYPGGA--------SIEIHQSLTRSNIRSIL--PRHE-QGGIFAAEGYARSSGTPGV 135 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~G--V~~vFg~PG~~--------~~~l~~al~~~~i~~i~--~~hE-~~A~~~A~Gyar~sg~~gv 135 (643)
...++..+++.|.+.| -+.+..+-|.. ...+.++|.+.+++++. .... ..+.-++.-+-+...++-+
T Consensus 112 ~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 191 (297)
T 3rot_A 112 NLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELDVGTDPNQVQSRVKSYFKIHPETNI 191 (297)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHHHCTTCCE
T ss_pred hHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEeecCCChHHHHHHHHHHHHhCCCCCE
Confidence 4568899999999999 88876665542 34466777777755443 2222 2333333333444557788
Q ss_pred EEEccchhhHHHHHHHHHhhh----CCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHH
Q 040733 136 CLVSSGPGVTNIMTGLMDAYS----DSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAF 211 (643)
Q Consensus 136 ~~~t~GpG~~N~~~gl~~A~~----~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~ 211 (643)
+++.+...+..++.++.++-. ..+.|+-+-+. +. ....+...... +.--.+++++.+..-+.+
T Consensus 192 i~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~D~~-~~-----------~~~~i~~~~~l-ttv~~~~~~~g~~av~~l 258 (297)
T 3rot_A 192 IFCLTSQALDPLGQMLLHPDRYDFNYQPQVYSFDKT-PN-----------TVSLIHKKLVN-YVMDQQPFLMGYLSITQL 258 (297)
T ss_dssp EEESSHHHHHHHHHHHHSHHHHTCCCCCEEEEECCC-HH-----------HHHHHHTTSCC-EEECCCHHHHHHHHHHHH
T ss_pred EEEcCCcchHHHHHHHHhcCCccCCCceEEEEeCCC-HH-----------HHHHHHcCCce-EEEecChHHHHHHHHHHH
Confidence 888888888888888887765 34443332211 00 00111211111 111223444443333333
Q ss_pred HHhhcCCCCeEEEEcccchhhhc
Q 040733 212 FIATSGRPGPVLIDIPVDVQLEL 234 (643)
Q Consensus 212 ~~A~s~~~GPV~i~iP~Dv~~~~ 234 (643)
.....+..-|-.+.+|.++...+
T Consensus 259 ~~~i~g~~~~~~i~~~~~~~~~~ 281 (297)
T 3rot_A 259 VLMNRYQLNPVNINTAMAENLYF 281 (297)
T ss_dssp HHHHHHCCCCCCEECCC------
T ss_pred HHHHhCCCCCcccccCceEEecc
Confidence 33334455688889998877543
No 130
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=56.48 E-value=20 Score=36.69 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=65.9
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEE-ecCccccCCHHHHH-HHH--Hh------CC-CeEEEEEeCCCch
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDI-DGDGSFIMNLQELA-AIK--AE------NI-PVKILLINNQYLG 542 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i-~GDGsf~m~~~eL~-Ta~--~~------~l-pv~ivV~NN~~~g 542 (643)
|.+++..+- +=-..++.|.|++++. -++++.+ .+|+.. .....|. .+. ++ +. |+++++-. ++ +
T Consensus 66 p~r~~~~gI--aE~~~v~~a~G~A~~G-~rp~~~~tf~~F~~-~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~-~g-~ 139 (342)
T 2bfd_B 66 KDRVFNTPL--CEQGIVGFGIGIAVTG-ATAIAEIQFADYIF-PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPW-GC-V 139 (342)
T ss_dssp TTTEEECCS--CHHHHHHHHHHHHHTT-CCEEEECSSGGGCG-GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEE-SC-C
T ss_pred CCeEEEcCc--CHHHHHHHHHHHHHCC-CeeEEEecchhHHH-HHHHHHHHHHHHHHhhhcCCccCCCEEEEEec-CC-C
Confidence 556665431 1112577888888874 4555544 677643 2223232 222 12 44 88887553 22 1
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
. +. ..| ...-|..-+...-|+..+...++.|....++++++.++|++|-
T Consensus 140 -~--------~G-~th----------~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i~ 188 (342)
T 2bfd_B 140 -G--------HG-ALY----------HSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFF 188 (342)
T ss_dssp -S--------SC-GGG----------SSCCCHHHHHTSTTCEEECCSSHHHHHHHHHHHHHSSSCEEEE
T ss_pred -C--------CC-cch----------hhHhHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhcCCcEEEE
Confidence 0 00 001 1224555554434888889999999999999999889999984
No 131
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=56.18 E-value=20 Score=33.14 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceee
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~t 302 (643)
+.+.+++++++|.++++-++++|.|.. .....+.....++|.++..
T Consensus 30 ~~~~i~~~~~~i~~a~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~ 76 (201)
T 3fxa_A 30 SEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVF 76 (201)
T ss_dssp CHHHHHHHHHHHHHCSSCEEEECCTHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEecHHHHHHHHHHHHHHhcCCcEEE
Confidence 678899999999999778899999876 3445555555668988864
No 132
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=54.56 E-value=3.2 Score=47.63 Aligned_cols=133 Identities=15% Similarity=0.107 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhC------CCcEEEEcCCchhhHHHHHHHH-HHhCCceeecCC---CCCCCCCCCCCcccccCCCCc
Q 040733 257 DELALRQTLKLIVES------KNPVLCVGGGCLNSSEELRKFV-GLTGIPVTCTTM---GLGLFPCTDELCLRMVGMFGT 326 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A------krPvIl~G~g~~~~~~~l~~la-e~lg~PV~tt~~---gkg~~~~~hpl~lG~~g~~~~ 326 (643)
-+++++.+++.|++. +...++.| +... ..+.+|+ +.+|.+-+.+.. ..+.........+|.. .++
T Consensus 117 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~-~~~e--~~~~~~~r~~~Gt~n~~~~~~~~c~~~~~~~~~~~~G~~--~~~ 191 (765)
T 2vpz_A 117 WEEALDHIAKKMLEIREKYGPEAIAFFGH-GTGD--YWFVDFLPAAWGSPNAAKPSVSLCTAPREVASQWVFGRP--IGG 191 (765)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGCEEEEC-STTH--HHHTTTHHHHHTCCCEECHHHHTTTHHHHHHHHHHSSSC--CCS
T ss_pred HHHHHHHHHHHHHHHHHhhCCcEEEEEcC-CCcH--HHHHHHHHHhcCCCccCCCcccccccHHHHHHHhhcCCC--CCC
Confidence 467888888887763 34555566 4322 4567888 889887554221 0000000001111210 010
Q ss_pred HHHHHhhhcCCEEEEecCccCcccc-Cccc----cccCCceEEEEcCCcccccCCCCCCeeEe----cCHHHHHHHHHHH
Q 040733 327 VYANYAVNECDLLLAAGVRFNERMT-SKLE----DFATRAKIVHIDIDSNEIGKVKLPDVSIC----ADAKLVFNRMNMI 397 (643)
Q Consensus 327 ~~~~~~l~~aDlvL~vG~~~~~~~t-~~~~----~~~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D~~~~L~~L~~~ 397 (643)
.. ..-++++|+||++|+.+.+... ..+. ......|+|.||+........ ++..+. .|...+ .+|...
T Consensus 192 ~~-~~d~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~~--Ad~~l~irPGtD~al~-~al~~~ 267 (765)
T 2vpz_A 192 HE-PIDWENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAK--AHRWLPIKPGTDTALL-LAWIHV 267 (765)
T ss_dssp SC-CCCGGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGGG--CSEEECCCTTCHHHHH-HHHHHH
T ss_pred CC-ccccccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchhh--CCeEeCCCCCcHHHHH-HHHHHH
Confidence 00 1236899999999998754322 1111 112457999999877765543 444443 355444 444434
Q ss_pred H
Q 040733 398 L 398 (643)
Q Consensus 398 l 398 (643)
+
T Consensus 268 i 268 (765)
T 2vpz_A 268 L 268 (765)
T ss_dssp H
T ss_pred H
Confidence 3
No 133
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=53.84 E-value=30 Score=34.85 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=66.1
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEE-ecCccccCCHHHHHH-HHH--------hCCCeEEEEEeCCCchh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDI-DGDGSFIMNLQELAA-IKA--------ENIPVKILLINNQYLGM 543 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i-~GDGsf~m~~~eL~T-a~~--------~~lpv~ivV~NN~~~g~ 543 (643)
|.+++..+-. =-..++.|.|++++. -++++.+ .++.. +.....|.+ +.. .++|+++++- .+++.
T Consensus 50 p~r~~~~gIa--E~~~v~~a~G~A~~G-~~p~~~~t~~~F~-~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~ 123 (324)
T 1umd_B 50 PDRVMDTPLS--EAAIVGAALGMAAHG-LRPVAEIQFADYI-FPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP--SGGGV 123 (324)
T ss_dssp TTTEEECCSC--HHHHHHHHHHHHHHT-CEEEEECSSGGGC-GGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE--ECSSS
T ss_pred CCcEEECchh--HHHHHHHHHHHHHCC-CEEEEEeccHhHH-HHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc--CCCCC
Confidence 5566654321 011577788888874 3555544 66664 333333432 222 6888877664 33321
Q ss_pred hHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 544 ~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
.+ +.+ ...-|. .+.+++ |+..+...++.|+...++++++.++|++|-
T Consensus 124 ---------~~---------g~~--hs~~~~-a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 171 (324)
T 1umd_B 124 ---------RG---------GHH--HSQSPE-AHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFL 171 (324)
T ss_dssp ---------SC---------GGG--SSCCCH-HHHHTSTTCEEEECCSHHHHHHHHHHHHHCSSCEEEE
T ss_pred ---------CC---------CCc--cchhHH-HHHhcCCCCEEEEeCCHHHHHHHHHHHHhcCCCEEEE
Confidence 00 001 111244 445554 788889999999999999999989999883
No 134
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=52.42 E-value=21 Score=36.12 Aligned_cols=111 Identities=11% Similarity=0.003 Sum_probs=65.4
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEE-ecCccccCCHHHHHH-HHH--------hCCCeEEEEEeCCCchh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDI-DGDGSFIMNLQELAA-IKA--------ENIPVKILLINNQYLGM 543 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i-~GDGsf~m~~~eL~T-a~~--------~~lpv~ivV~NN~~~g~ 543 (643)
|.+++..+- +=-..++.|.|++++. -++++.+ .+++. +.....|.. +.. .++|+++++- .+++.
T Consensus 49 p~r~~~~gI--aE~~~v~~a~G~A~~G-~rp~~~~t~~~F~-~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~ 122 (324)
T 1w85_B 49 EDRVFDTPL--AESGIGGLAIGLALQG-FRPVPEIQFFGFV-YEVMDSICGQMARIRYRTGGRYHMPITIRSP--FGGGV 122 (324)
T ss_dssp TTTEEECCS--CHHHHHHHHHHHHHTT-CEEEEBCSSGGGG-GGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE--ECSSS
T ss_pred CCcEEEcch--hHHHHHHHHHHHHhCC-CEEEEEecchhHH-HHHHHHHHHHHHHHhhhccCCCcCCEEEEEe--ccCCC
Confidence 556665431 1112677888888874 3444444 56664 344444432 222 6888777653 33221
Q ss_pred hHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 544 ~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
. + +.+ ...-|. .+.+++ |+..+...++.|+...++++++.++|++|-
T Consensus 123 ----------~-------~-g~~--hs~~~~-a~~~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i~ 170 (324)
T 1w85_B 123 ----------H-------T-PEL--HSDSLE-GLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFL 170 (324)
T ss_dssp ----------C-------C-CTT--SSCCCH-HHHTTSTTCEEECCSSHHHHHHHHHHHHHSSSCEEEE
T ss_pred ----------C-------C-CCc--ccccHH-HHHccCCCCEEEeeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 0 0 001 111233 444444 778888899999999999999989999884
No 135
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=52.06 E-value=68 Score=29.68 Aligned_cols=100 Identities=22% Similarity=0.313 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHH--HHHh------hCCCeEEecCChhHH---HHHHHHH----HH----HhC
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIH--QSLT------RSNIRSILPRHEQGG---IFAAEGY----AR----SSG 131 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~--~al~------~~~i~~i~~~hE~~A---~~~A~Gy----ar----~sg 131 (643)
..++.|++.|++.|-=++||+-++...... ..|. +.++..+....+..- ..-..|| ++ ..+
T Consensus 34 ~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l~~~~~ 113 (201)
T 3trj_A 34 QAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQVAALGN 113 (201)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHHHhhCC
Confidence 567788888888898899998665543332 2233 235665554423221 1111222 11 112
Q ss_pred CcEEEEEccchh-hHHHHHHHHHhhhCCCCEEEEeCCCcc
Q 040733 132 TPGVCLVSSGPG-VTNIMTGLMDAYSDSIPILAITGQVSQ 170 (643)
Q Consensus 132 ~~gv~~~t~GpG-~~N~~~gl~~A~~~~vPvlvItg~~~~ 170 (643)
+--++++-|..| ..+.+..+..|...++|+|.||+....
T Consensus 114 ~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s 153 (201)
T 3trj_A 114 EDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGG 153 (201)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 223444444444 566788889999999999999986544
No 136
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=51.06 E-value=46 Score=30.03 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHH--H------hhCCCeEEecCChhHHH---H--------HHHHHHHHhC
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQS--L------TRSNIRSILPRHEQGGI---F--------AAEGYARSSG 131 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~a--l------~~~~i~~i~~~hE~~A~---~--------~A~Gyar~sg 131 (643)
..++.|++.|.+.+-=++||+-++.....+-+ | .+.+++.+....+.+-. . +..-+...-+
T Consensus 30 ~~~~~i~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (188)
T 1tk9_A 30 KVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGN 109 (188)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHHHHhCC
Confidence 45566677777787667777755443332222 1 12235444443233221 1 1111222122
Q ss_pred CcEEEEEccchh-hHHHHHHHHHhhhCCCCEEEEeCCC
Q 040733 132 TPGVCLVSSGPG-VTNIMTGLMDAYSDSIPILAITGQV 168 (643)
Q Consensus 132 ~~gv~~~t~GpG-~~N~~~gl~~A~~~~vPvlvItg~~ 168 (643)
+--++++-|-.| ..+.+..+..|...+.++|.||+..
T Consensus 110 ~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~ 147 (188)
T 1tk9_A 110 EKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKG 147 (188)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 223444444444 5667788888999999999999853
No 137
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=50.30 E-value=2.8 Score=41.42 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCc--HHHHHHHhhCCCeEEecCC----------hhHHHHHHHHHHHHhCCcEEEEEc
Q 040733 72 GADIIVEALERQGVTTVFAYPGGAS--IEIHQSLTRSNIRSILPRH----------EQGGIFAAEGYARSSGTPGVCLVS 139 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~--~~l~~al~~~~i~~i~~~h----------E~~A~~~A~Gyar~sg~~gv~~~t 139 (643)
-.++.++.+.+.|.+.|...-+... +=+.+.|.. ..+.|.... |.--+.+=.||.-..|..||.-=|
T Consensus 38 evnAai~ga~~~Ga~eV~V~DsHg~~~NLl~e~L~~-ra~li~G~prp~~Mm~Gld~sfD~v~fiGYHa~AG~~gvLaHT 116 (274)
T 1hi9_A 38 EANYCIAEAFNSGCTEVLVNDSHSKMNNLMVEKLHP-EADLISGDVKPFSMVEGLDDTFRGALFLGYHARASTPGVMSHS 116 (274)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECSTTSCCSCTTTSCT-TSEEEEESCCTTGGGTTCCTTCSEEEEEEECCCTTSSSTTCCS
T ss_pred HHHHHHHHHHHCCCeEEEEEccCCCcCCcChhHCCc-CeEEEeCCCCCcchhccccCCccEEEEeecCCCCCCCCccCCC
Confidence 4456789999999999998765332 223333322 255555443 221111223433333344443222
Q ss_pred cchhhHH-----------HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHH
Q 040733 140 SGPGVTN-----------IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIK 208 (643)
Q Consensus 140 ~GpG~~N-----------~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~ 208 (643)
++-...+ .+++.. |-.-++||+++|||......-+..+..+..+.+-+.+.+++..-.+|+.+.+.|+
T Consensus 117 ~~~~~~~v~iNG~~~gE~~lna~~-Ag~~gVPV~lvsGDd~~~~e~~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~I~ 195 (274)
T 1hi9_A 117 MIFGVRHFYINDRPVGELGLNAYV-AGYYDVPVLMVAGDDRAAKEAEELIPNVTTAAVKQTISRSAVKCLSPAKRGRLLT 195 (274)
T ss_dssp SSTTEEEEEETTEEECHHHHHHHH-HHHTTCCEEEEEEEHHHHHHHHTTSTTCEEEEEEEEEETTEEEECCHHHHHHHHH
T ss_pred CccceEEEEECCEEcCHHHHHHHH-HhhcCCCEEEEecCHHHHHHHHHhCCCCeEEEEeecccccccccCCHHHHHHHHH
Confidence 2211122 233333 4456999999999875432111111222222333344556777778888888888
Q ss_pred HHHHHhhcC--------CCCeEEEEccc
Q 040733 209 EAFFIATSG--------RPGPVLIDIPV 228 (643)
Q Consensus 209 ~A~~~A~s~--------~~GPV~i~iP~ 228 (643)
++.+.|.+. .++|+.++|-+
T Consensus 196 ~aa~~Al~~~~~~~p~~~~~p~~l~v~f 223 (274)
T 1hi9_A 196 EKTAFALQNKDKVKPLTPPDRPVLSIEF 223 (274)
T ss_dssp HHHHHHHHSGGGCCCCCCCSSCEEEEEE
T ss_pred HHHHHHHhhccCCCCcCCCCCEEEEEEE
Confidence 888888753 24666665543
No 138
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=49.60 E-value=30 Score=31.19 Aligned_cols=115 Identities=11% Similarity=0.171 Sum_probs=59.8
Q ss_pred CcEEEEcCCch--h----hHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEe----
Q 040733 273 NPVLCVGGGCL--N----SSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAA---- 342 (643)
Q Consensus 273 rPvIl~G~g~~--~----~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~v---- 342 (643)
|..+++|+..- . ..+++.+++++.|..|+. |.++...-.. .. .......+++||+||++
T Consensus 10 ~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~--------P~~~~~~~~~-~i--~~~d~~~i~~aD~vVA~ldpf 78 (161)
T 2f62_A 10 RKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLI--------PTDNEATEAL-DI--RQKNIQMIKDCDAVIADLSPF 78 (161)
T ss_dssp CEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEEC--------TTTTCCSSHH-HH--HHHHHHHHHHCSEEEEECCCC
T ss_pred hceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEC--------CCccCcchHH-HH--HHHHHHHHHhCCEEEEEecCC
Confidence 66788887653 2 235677777778877653 3322211000 00 01113578999999999
Q ss_pred -cCccCccccCcc-ccccCCceEEEEcCCcccc------------------cC--C--CCCCeeEecCHHHHHHHHHHHH
Q 040733 343 -GVRFNERMTSKL-EDFATRAKIVHIDIDSNEI------------------GK--V--KLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 343 -G~~~~~~~t~~~-~~~~~~~~iI~Id~d~~~i------------------~~--~--~~~~~~i~~D~~~~L~~L~~~l 398 (643)
|...++-+--.. -.+..++.+|-+..|.... +. | ......+..|..+.|+.|.+.+
T Consensus 79 ~g~~~D~GTafEiGyA~AlgKPVi~l~~d~r~~~~~~~~~~d~~g~~vedf~~~~NLMl~~~~~~~~~~~~~l~~l~~~~ 158 (161)
T 2f62_A 79 RGHEPDCGTAFEVGCAAALNKMVLTFTSDRRNMREKYGSGVDKDNLRVEGFGLPFNLMLYDGVEVFDSFESAFKYFLANF 158 (161)
T ss_dssp SSSSCCHHHHHHHHHHHHTTCEEEEECSCCSCHHHHHTSSBCTTSCBCCCSSCSSCGGGCCSSCEESSHHHHHHHHHHHS
T ss_pred CCCCCCCcHHHHHHHHHHCCCEEEEEEcCchhhhhhcccccccccccccccCCcchhhhhhhheeeCCHHHHHHHHHHhh
Confidence 433322111111 1233466777776654311 11 1 1122336788888888887654
No 139
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=49.10 E-value=20 Score=43.31 Aligned_cols=139 Identities=15% Similarity=0.034 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhC------CCcEEEEcCCchh--hHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHH
Q 040733 257 DELALRQTLKLIVES------KNPVLCVGGGCLN--SSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A------krPvIl~G~g~~~--~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~ 328 (643)
-+++++.+++.|.+. ++...+.+..+.. ......+|+..+|-+.+.......-.|..++.. +|......
T Consensus 163 WDEAld~IA~~l~~i~~~~Gp~sI~~~~~~~~~~~~~y~~~~rf~~~lG~~~~~~~~~~c~~~~~~~~~---~G~~~~~~ 239 (1247)
T 1q16_A 163 WQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQT---WGEQTDVP 239 (1247)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGEEEECCCGGGSHHHHHHHHHHHHHHTCEEECCTTTTTCSCTHHHHH---HSCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEeCCccchHHHHHHHHHHHHHhCCCccCCCCchhhhhhhHHHH---hCCCCCCC
Confidence 467777777766543 2233333333321 112235888999988764322111111111111 22211000
Q ss_pred HHHhhhcCCEEEEecCccCccccCccc----cccCCceEEEEcCCcccccCCCCCCeeEe----cCHHHHHHHHHHHHhh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLE----DFATRAKIVHIDIDSNEIGKVKLPDVSIC----ADAKLVFNRMNMILES 400 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~----~~~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D~~~~L~~L~~~l~~ 400 (643)
...-+.+||+||++|+......+..+. .....+|+|.||++..+..+ .+|..|. .|+..++..+...+++
T Consensus 240 ~~~D~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ta~--~AD~wl~irPGTD~AL~~am~~vIi~e 317 (1247)
T 1q16_A 240 ESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAK--LCDLWLAPKQGTDAAMALAMGHVMLRE 317 (1247)
T ss_dssp CGGGGGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHHHH--HSSEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCcchh--hCCeEEeeCCCcHHHHHHHHHHHHHHC
Confidence 012367999999999986332211111 11245799999998877644 2343333 4776665554444443
No 140
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=48.14 E-value=18 Score=32.45 Aligned_cols=70 Identities=23% Similarity=0.326 Sum_probs=45.5
Q ss_pred ccccCCCCCCcHHHHHHHHHHHCCCC----EEEEccCCCcHHHH-HHHhhCC-CeEE----------ecCChhHHHHHHH
Q 040733 61 SSRFAPDKPRKGADIIVEALERQGVT----TVFAYPGGASIEIH-QSLTRSN-IRSI----------LPRHEQGGIFAAE 124 (643)
Q Consensus 61 ~~~~~~~~~~~~a~~lv~~L~~~GV~----~vFg~PG~~~~~l~-~al~~~~-i~~i----------~~~hE~~A~~~A~ 124 (643)
.+||+..-.-..-+--.+.|+++|++ .+|-+||...+|+. +.|.+++ ..-| ..++|..+...+.
T Consensus 19 ~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~VIrG~T~Hfd~Va~~vs~ 98 (154)
T 1hqk_A 19 ASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHFDYIASEVSK 98 (154)
T ss_dssp EECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEEECCSSTHHHHHHHHHHH
T ss_pred EeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHHHHHH
Confidence 45664422223344456889999997 79999999999998 4455432 2222 2236777777777
Q ss_pred HHHHHh
Q 040733 125 GYARSS 130 (643)
Q Consensus 125 Gyar~s 130 (643)
|..+++
T Consensus 99 gl~~v~ 104 (154)
T 1hqk_A 99 GLANLS 104 (154)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 141
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=47.51 E-value=45 Score=30.01 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=49.2
Q ss_pred cCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCc----HHH----HHHHhhCC-CeEEe----cCChhHHHHHHHHHHHHh
Q 040733 64 FAPDKPRKGADIIVEALERQGVTTVFAYPGGAS----IEI----HQSLTRSN-IRSIL----PRHEQGGIFAAEGYARSS 130 (643)
Q Consensus 64 ~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~----~~l----~~al~~~~-i~~i~----~~hE~~A~~~A~Gyar~s 130 (643)
|.+.+.+...+.+.+.|++.|.+..| |.... ..+ ++.+.+++ +=.+. .........+=.|||.+.
T Consensus 20 F~~~e~~~~~~~l~~~l~~~G~~v~~--P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Al 97 (161)
T 2f62_A 20 FNPDMGASYYNKVRELLKKENVMPLI--PTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL 97 (161)
T ss_dssp GSTTTTHHHHHHHHHHHHTTTCEEEC--TTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEC--CCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHC
Confidence 55554367889999999999986443 76532 234 34556666 22222 235666777778999999
Q ss_pred CCcEEEEEc
Q 040733 131 GTPGVCLVS 139 (643)
Q Consensus 131 g~~gv~~~t 139 (643)
|||.+++.+
T Consensus 98 gKPVi~l~~ 106 (161)
T 2f62_A 98 NKMVLTFTS 106 (161)
T ss_dssp TCEEEEECS
T ss_pred CCEEEEEEc
Confidence 999887754
No 142
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=47.46 E-value=32 Score=27.58 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=36.9
Q ss_pred CHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 573 DMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 573 d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
.|..+-+--|.+...|+++.||++.+++....-...++-|.+|..+
T Consensus 17 kfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddke 62 (134)
T 2l69_A 17 KFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKE 62 (134)
T ss_dssp HHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHH
T ss_pred HHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHH
Confidence 4667777788889999999999999999887666777777776543
No 143
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=46.94 E-value=79 Score=36.26 Aligned_cols=112 Identities=11% Similarity=0.001 Sum_probs=65.2
Q ss_pred eEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH----HHHH----HHHh-hh----CCC-CEEEEeCCCcccccC
Q 040733 109 RSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN----IMTG----LMDA-YS----DSI-PILAITGQVSQKLLG 174 (643)
Q Consensus 109 ~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N----~~~g----l~~A-~~----~~v-PvlvItg~~~~~~~g 174 (643)
|+|....|++.+.+|.||+. +|+.+. +.+ .-.++. +... |..+ .. -.+ ++.+|.. ...-..|
T Consensus 492 R~i~GI~Eh~M~gia~Glal-~G~~~f-~~t-~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~T-h~si~~G 567 (845)
T 3ahc_A 492 QVTEQLSEHQCEGFLEAYLL-TGRHGI-WSS-YESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVS-SHVWRQD 567 (845)
T ss_dssp SEEECSCHHHHHHHHHHHHH-TTCEEE-EEE-EHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEE-SCGGGCT
T ss_pred cEeeeecHHHHHHHHHHHHh-cCCCCc-eec-chhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEe-CCceeec
Confidence 67779999999999999995 466443 333 334443 3333 3333 11 244 3554432 2222334
Q ss_pred CC--CCCccCHHHHhhcc---ceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 175 TD--AFQEIPVVEVTRYM---TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 175 ~~--~~Q~~d~~~~~~~~---tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
.+ .+|.+.+.++++.. .--+.+|-.|.|..+ +..|++.|...+ +|+++-+
T Consensus 568 eDGpTHQ~~e~~d~l~~~r~~~iPn~~V~~PaDane-t~~a~~~al~~~-~~~~v~v 622 (845)
T 3ahc_A 568 HNGFSHQDPGVTSLLINKTFNNDHVTNIYFATDANM-LLAISEKCFKST-NKINAIF 622 (845)
T ss_dssp TTCGGGCCCTHHHHHGGGCCTTCCCEEEEECCSHHH-HHHHHHHHHHCB-SCEEEEE
T ss_pred CCCCCCCCcHHHHHHHHhhccCCCCeEEEeCCCHHH-HHHHHHHHHHcC-CCeEEEE
Confidence 44 36877677777665 445666666666544 345666666654 6666655
No 144
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=46.66 E-value=4.3 Score=46.29 Aligned_cols=132 Identities=17% Similarity=0.236 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhC------CCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCccc---ccCCCCc
Q 040733 257 DELALRQTLKLIVES------KNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLR---MVGMFGT 326 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A------krPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG---~~g~~~~ 326 (643)
-+++++.+++.|++. +...++.|.+.. +..-.+.+|++.+|.+-+.+.. . +.. .+...+ ++|...
T Consensus 80 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~n~~~~~-~--~c~-~~~~~~~~~~~G~~~- 154 (727)
T 2e7z_A 80 WDQALDEIAEKLKKIIAKYGPESLGVSQTEINQQSEYGTLRRFMNLLGSPNWTSAM-Y--MCI-GNTAGVHRVTHGSYS- 154 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEEECGGGTCCCTTHHHHHHHHHTCCCEECGG-G--GTT-HHHHHHHHHHHSSCE-
T ss_pred HHHHHHHHHHHHHHHHHhhCCcEEEEEeCCCCCccchHHHHHHHHHcCCCCccCCc-c--cch-hHHHHHHHHhcCCCC-
Confidence 477888888887763 344555554433 2113357899999987554311 0 100 001111 112110
Q ss_pred HHHHHhhhcCCEEEEecCccCcccc-Ccccc----ccCCceEEEEcCCcccccCCCCCCeeEe----cCHHHHHHHHHHH
Q 040733 327 VYANYAVNECDLLLAAGVRFNERMT-SKLED----FATRAKIVHIDIDSNEIGKVKLPDVSIC----ADAKLVFNRMNMI 397 (643)
Q Consensus 327 ~~~~~~l~~aDlvL~vG~~~~~~~t-~~~~~----~~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D~~~~L~~L~~~ 397 (643)
..-++++|+||++|+.+.+... ..... ....+|+|.||+........ ++..|. .|...++..+...
T Consensus 155 ---~~d~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~~--Ad~~l~irPGtD~al~~a~~~~i 229 (727)
T 2e7z_A 155 ---FASFADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAEM--ADIWLPLRYGTDAALFLGMINVI 229 (727)
T ss_dssp ---EECTTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHHH--CSEEECCCTTCHHHHHHHHHHHH
T ss_pred ---CCCcccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchhh--cceeecCCCCcHHHHHHHHHHHH
Confidence 0136899999999998743322 11111 12357899999887665543 444443 3554444333333
Q ss_pred H
Q 040733 398 L 398 (643)
Q Consensus 398 l 398 (643)
+
T Consensus 230 i 230 (727)
T 2e7z_A 230 I 230 (727)
T ss_dssp H
T ss_pred H
Confidence 3
No 145
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=46.26 E-value=80 Score=32.09 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCc-----hhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCC---CCc-H
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGC-----LNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGM---FGT-V 327 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~-----~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~---~~~-~ 327 (643)
....++++.++|.++++ ++|.|.-- .++.-.+.++++++|..+..-..+ .+|+.-.+..+.-.. ... .
T Consensus 7 ~~~~~~~l~~~i~~~~~-i~I~~H~~pD~DaiGS~~~l~~~l~~~g~~~~~~~~~--~~~~~~~fl~~~~~i~~~~~~~~ 83 (343)
T 3dma_A 7 AQAHIDHFTKWFERADK-IVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPN--AFPDFLKWMPGSKDILLYDRYQE 83 (343)
T ss_dssp CHHHHHHHHHHHHHCSE-EEEEECSSCCHHHHHHHHHHHHHHHHTSCEEEEEESS--CCCGGGTTSTTGGGCEETTTCHH
T ss_pred CHHHHHHHHHHHhcCCe-EEEEecCCCChHHHHHHHHHHHHHHHcCCCEEEECCC--CCchHhhhccCcchhcccccChH
Confidence 56778899999998765 55556532 256667889999999887543222 233322111111000 001 1
Q ss_pred HHHHhhhcCCEEEEecCccCccccCcccccc-CCceEEEEcCCccc
Q 040733 328 YANYAVNECDLLLAAGVRFNERMTSKLEDFA-TRAKIVHIDIDSNE 372 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~-~~~~iI~Id~d~~~ 372 (643)
.+...+.+.|+++++.+.-.++.......+. ...+++.||..+..
T Consensus 84 ~~~~~~~~~~lvi~VD~~~~~r~~~~~~~l~~~~~~~ivIDHH~~~ 129 (343)
T 3dma_A 84 FADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYP 129 (343)
T ss_dssp HHHHHHHHCSEEEEESCSSGGGGTTCHHHHHHCCSEEEEEECCSSC
T ss_pred HHhhcccCCCEEEEEeCCChHHhchhHHHHHhCCCCEEEEcCCCCC
Confidence 2334456899999999886544321111111 23577888887753
No 146
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=44.56 E-value=21 Score=32.00 Aligned_cols=70 Identities=24% Similarity=0.217 Sum_probs=45.7
Q ss_pred ccccCCCCCCcHHHHHHHHHHHCCCC----EEEEccCCCcHHHH-HHHhhCC-CeEE----------ecCChhHHHHHHH
Q 040733 61 SSRFAPDKPRKGADIIVEALERQGVT----TVFAYPGGASIEIH-QSLTRSN-IRSI----------LPRHEQGGIFAAE 124 (643)
Q Consensus 61 ~~~~~~~~~~~~a~~lv~~L~~~GV~----~vFg~PG~~~~~l~-~al~~~~-i~~i----------~~~hE~~A~~~A~ 124 (643)
.+||+..-.-..-+--.+.|+++|++ .++-+||...+|+. +.|.+++ ..-| ..++|..+...+.
T Consensus 19 ~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~V~~~vs~ 98 (154)
T 1rvv_A 19 VGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAK 98 (154)
T ss_dssp EESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEEECCSSSHHHHHHHHHHH
T ss_pred EEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHHHHHH
Confidence 46664422223344456889999997 79999999999998 4455432 2222 2347777777777
Q ss_pred HHHHHh
Q 040733 125 GYARSS 130 (643)
Q Consensus 125 Gyar~s 130 (643)
|..+++
T Consensus 99 Gl~~v~ 104 (154)
T 1rvv_A 99 GIAQAA 104 (154)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 147
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=43.97 E-value=84 Score=26.36 Aligned_cols=82 Identities=15% Similarity=0.217 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHhCCceee-cCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceE
Q 040733 285 SSEELRKFVGLTGIPVTC-TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKI 363 (643)
Q Consensus 285 ~~~~l~~lae~lg~PV~t-t~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~i 363 (643)
+.+.|.+-|+++|+.+-. |-.+.|+- ++|. .+-+.+||+||+.+..-.+ ....| ..+++
T Consensus 24 AAeaL~~aA~~~G~~ikVEtqGs~G~~---n~Lt------------~~~I~~Ad~VIiA~d~~v~----~~~RF-~GK~v 83 (111)
T 2kyr_A 24 AAQALEEAAVEAGYEVKIETQGADGIQ---NRLT------------AQDIAEATIIIHSVAVTPE----DNERF-ESRDV 83 (111)
T ss_dssp HHHHHHHHHHHTSSEEEEEEEETTEEE---SCCC------------HHHHHHCSEEEEEESSCCT----TGGGG-TTSCE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCcC---CCCC------------HHHHHhCCEEEEEeCCCcC----chhhc-CCCeE
Confidence 678899999999999854 43333321 1221 3468899999999865321 11223 35688
Q ss_pred EEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 364 VHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 364 I~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
+++++...- .|++.+|+...+.+
T Consensus 84 ~~~~v~~ai------------~~p~~~l~~a~~~~ 106 (111)
T 2kyr_A 84 YEITLQDAI------------KNAAGIIKEIEEMI 106 (111)
T ss_dssp EEEETTHHH------------HSHHHHHHHHHHHH
T ss_pred EEeCHHHHH------------HCHHHHHHHHHHHH
Confidence 888765532 56777777665544
No 148
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=43.88 E-value=70 Score=26.57 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=54.5
Q ss_pred cCCch---hhHHHHHHHHHHhCCcee-ecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcc
Q 040733 279 GGGCL---NSSEELRKFVGLTGIPVT-CTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKL 354 (643)
Q Consensus 279 G~g~~---~~~~~l~~lae~lg~PV~-tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~ 354 (643)
+.|.. -+.+.|++.++++|+.+- .|-.+.|+- +++. .+.+.++|+||+..-.-- ...
T Consensus 12 ptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~---n~Lt------------~~~I~~AD~VIia~d~~v----~~~ 72 (106)
T 2m1z_A 12 ATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIE---NELT------------EKDVNIGEVVIFAVDTKV----RNK 72 (106)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEES---SCCC------------HHHHHHCSEEEEEESSCC----STH
T ss_pred CCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCcccc---CCCC------------HHHHhhCCEEEEeccccc----cch
Confidence 44554 357889999999999984 444333322 2221 345789999998865421 111
Q ss_pred ccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 355 EDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 355 ~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+.|. ..+++++++...- .|+..+|+...+.+.
T Consensus 73 ~RF~-gk~v~~~~v~~~i------------~~~~~~l~~a~~~~~ 104 (106)
T 2m1z_A 73 ERFD-GKVVLEVPVSAPI------------KDAEKVINAALALID 104 (106)
T ss_dssp HHHT-TSEEEEECTTHHH------------HCHHHHHHHHHHHHT
T ss_pred hccC-CCcEEEEcHHHHH------------HCHHHHHHHHHHHHh
Confidence 2333 5688888765521 567777777666554
No 149
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=42.95 E-value=1.2e+02 Score=36.23 Aligned_cols=119 Identities=8% Similarity=0.012 Sum_probs=72.7
Q ss_pred CeEE-ecCChhHHHHHHHHHHHHhCCcEEEE-EccchhhHHH-------HHHHHHhhhCCCCEEEEeCCCcccccCCCC-
Q 040733 108 IRSI-LPRHEQGGIFAAEGYARSSGTPGVCL-VSSGPGVTNI-------MTGLMDAYSDSIPILAITGQVSQKLLGTDA- 177 (643)
Q Consensus 108 i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~-~t~GpG~~N~-------~~gl~~A~~~~vPvlvItg~~~~~~~g~~~- 177 (643)
.+++ ....|+++..+|.|||...-++-++. .+.|.=+..+ ++....-|..+.||+++.-.-. .|.+.
T Consensus 829 ~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~---~G~G~~ 905 (1113)
T 2xt6_A 829 FLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH---EGQGPD 905 (1113)
T ss_dssp EEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC---SSSCTT
T ss_pred cEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC---CCCChh
Confidence 6777 56799999999999998876665543 4554322222 2222222456889888864221 23333
Q ss_pred CCccCHHHHh--hccceeee-EeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchhh
Q 040733 178 FQEIPVVEVT--RYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL 232 (643)
Q Consensus 178 ~Q~~d~~~~~--~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~~ 232 (643)
++.....+++ +.+--+.. ...++.++..+|++|+. ...++||++--|+.+..
T Consensus 906 Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a~~---~~~~~Pvii~~pk~L~R 960 (1113)
T 2xt6_A 906 HTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGK---DGIQRPLIVFTPKSMLR 960 (1113)
T ss_dssp SSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHHHHH---SSCCCCEEEEECSGGGS
T ss_pred hhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHHHHh---ccCCCCEEEEechHHhC
Confidence 3444455666 44333322 34567778888887765 22348999999988764
No 150
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=42.85 E-value=1.3e+02 Score=34.82 Aligned_cols=119 Identities=8% Similarity=0.006 Sum_probs=71.9
Q ss_pred CeEE-ecCChhHHHHHHHHHHHHhCCcEEE-EEccchhhHHH-------HHHHHHhhhCCCCEEEEeCCCcccccCCCC-
Q 040733 108 IRSI-LPRHEQGGIFAAEGYARSSGTPGVC-LVSSGPGVTNI-------MTGLMDAYSDSIPILAITGQVSQKLLGTDA- 177 (643)
Q Consensus 108 i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~-~~t~GpG~~N~-------~~gl~~A~~~~vPvlvItg~~~~~~~g~~~- 177 (643)
.+++ ....|+++..+|.|||...-++-++ -.+.|.=+..+ ++....-|..+.||+++...-- .|.+.
T Consensus 584 ~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~---~G~Gp~ 660 (868)
T 2yic_A 584 FLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH---EGQGPD 660 (868)
T ss_dssp EEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC---SSSCTT
T ss_pred cEEEECCccHHHHHHHHHHHHccCCCCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC---CCCChh
Confidence 6776 6679999999999999887666553 34555322222 2222222455889887764221 24443
Q ss_pred CCccCHHHHh--hccceeee-EeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchhh
Q 040733 178 FQEIPVVEVT--RYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL 232 (643)
Q Consensus 178 ~Q~~d~~~~~--~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~~ 232 (643)
++.....+++ +.+--+.. ...++.++..+|++++. ...++||++--|+.+..
T Consensus 661 Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a~~---~~~~~Pvii~~pk~llR 715 (868)
T 2yic_A 661 HTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGK---DGIQRPLIVFTPKSMLR 715 (868)
T ss_dssp SSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHHHHH---SSCCCCEEEEECSGGGG
T ss_pred hcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHHHHh---cCCCCcEEEEechHHhC
Confidence 3333355565 44433222 34567778888887765 22348999999988764
No 151
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=42.17 E-value=2.2e+02 Score=26.60 Aligned_cols=88 Identities=9% Similarity=0.010 Sum_probs=55.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCC--------cHHHHHHHhhCCCeEE--ec--CChhHHHHHHHHHHHHhC-CcEE
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGA--------SIEIHQSLTRSNIRSI--LP--RHEQGGIFAAEGYARSSG-TPGV 135 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~--------~~~l~~al~~~~i~~i--~~--~hE~~A~~~A~Gyar~sg-~~gv 135 (643)
...++..+++.|.+.|-++|.-+-|.. ...+.+++.+.+++.. .. .+...+--++.-+-+... +|-+
T Consensus 104 ~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a 183 (272)
T 3o74_A 104 DRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGEVRRYQGEAFSRECGQRLMQQLIDDLGGLPDA 183 (272)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEEEESSSSHHHHHHHHHHHHHHHTSCCSE
T ss_pred hHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChheeecCCCCHHHHHHHHHHHHhcCCCCCcE
Confidence 456889999999999999876665532 2345566666664332 22 233333333344444445 6888
Q ss_pred EEEccchhhHHHHHHHHHhhh
Q 040733 136 CLVSSGPGVTNIMTGLMDAYS 156 (643)
Q Consensus 136 ~~~t~GpG~~N~~~gl~~A~~ 156 (643)
+++....-+..++.++.++-.
T Consensus 184 i~~~~d~~a~g~~~al~~~g~ 204 (272)
T 3o74_A 184 LVTTSYVLLQGVFDTLQARPV 204 (272)
T ss_dssp EEESSHHHHHHHHHHHHTSCG
T ss_pred EEEeCchHHHHHHHHHHHcCC
Confidence 888877777777777776643
No 152
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=41.84 E-value=29 Score=34.60 Aligned_cols=34 Identities=9% Similarity=0.048 Sum_probs=21.0
Q ss_pred CCeEEEEecCccccCCHHHHHHHHHhC-CC--eEEEEEeC
Q 040733 502 GAIVVDIDGDGSFIMNLQELAAIKAEN-IP--VKILLINN 538 (643)
Q Consensus 502 ~~~Vv~i~GDGsf~m~~~eL~Ta~~~~-lp--v~ivV~NN 538 (643)
-|-+|++.|.|+ ++++|..+.+.+ ++ +..||-|+
T Consensus 96 ~ri~vl~Sg~g~---~l~~ll~~~~~g~l~~~i~~Visn~ 132 (292)
T 3lou_A 96 PKVLIMVSKLEH---CLADLLFRWKMGELKMDIVGIVSNH 132 (292)
T ss_dssp CEEEEEECSCCH---HHHHHHHHHHHTSSCCEEEEEEESS
T ss_pred CEEEEEEcCCCc---CHHHHHHHHHcCCCCcEEEEEEeCc
Confidence 355677888875 677777665554 44 55555544
No 153
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=41.79 E-value=2.5e+02 Score=27.12 Aligned_cols=86 Identities=9% Similarity=-0.022 Sum_probs=51.1
Q ss_pred CCcHHHHHHHHHHHC--CCCEEEEccCCC--------cHHHHHHHhhCCCeEEe---cCChhHHHH-HHHHHHHHhCCcE
Q 040733 69 PRKGADIIVEALERQ--GVTTVFAYPGGA--------SIEIHQSLTRSNIRSIL---PRHEQGGIF-AAEGYARSSGTPG 134 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~--GV~~vFg~PG~~--------~~~l~~al~~~~i~~i~---~~hE~~A~~-~A~Gyar~sg~~g 134 (643)
...++..+++.|.+. |-++|.-+-|.. ...+.+++.+.+++++. .......++ ++.-+-+...++-
T Consensus 105 ~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (313)
T 2h3h_A 105 NYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDEEDGARAVSLAEAALNAHPDLD 184 (313)
T ss_dssp HHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEECSSCHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEeecCCCCHHHHHHHHHHHHHHCcCce
Confidence 346788888999988 988877666642 23455666666665432 222222222 2222222234677
Q ss_pred EEEEccchhhHHHHHHHHHh
Q 040733 135 VCLVSSGPGVTNIMTGLMDA 154 (643)
Q Consensus 135 v~~~t~GpG~~N~~~gl~~A 154 (643)
++++.+...+..++.++.++
T Consensus 185 ai~~~~d~~a~g~~~al~~~ 204 (313)
T 2h3h_A 185 AFFGVYAYNGPAQALVVKNA 204 (313)
T ss_dssp EEEECSTTHHHHHHHHHHHT
T ss_pred EEEEcCCCccHHHHHHHHHc
Confidence 88888777777777776665
No 154
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=41.16 E-value=1.5e+02 Score=34.52 Aligned_cols=117 Identities=10% Similarity=0.134 Sum_probs=68.7
Q ss_pred CeEE-ecCChhHHHHHHHHHHHHhCCcEEEE-EccchhhHH--------HHHHHHHh-hhCCCCEEEEeCCCcccccCCC
Q 040733 108 IRSI-LPRHEQGGIFAAEGYARSSGTPGVCL-VSSGPGVTN--------IMTGLMDA-YSDSIPILAITGQVSQKLLGTD 176 (643)
Q Consensus 108 i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~-~t~GpG~~N--------~~~gl~~A-~~~~vPvlvItg~~~~~~~g~~ 176 (643)
.+++ ....|++++.+|.|||...-+.-+++ .+.|. ++| .++.. +| |..+.||+++... .. .|.+
T Consensus 652 ~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~d-F~~~AQra~DQii~~~-~ak~~~~~~vv~~l~~-G~--~g~G 726 (933)
T 2jgd_A 652 FRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGD-FANGAQVVIDQFISSG-EQKWGRMCGLVMLLPH-GY--EGQG 726 (933)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGG-GGGGGHHHHHHTTTTH-HHHHCCCCCCEEEEEC-CC--SSSC
T ss_pred CeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhh-hhcccHHHHHHHHHHH-HHHHccCCCEEEEEeC-CC--CCCC
Confidence 6776 55799999999999998876632322 35553 222 22222 23 3468888887643 22 2323
Q ss_pred C-CCccCHHHHhhccceeeeE---eCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchhh
Q 040733 177 A-FQEIPVVEVTRYMTKHNYL---VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL 232 (643)
Q Consensus 177 ~-~Q~~d~~~~~~~~tk~~~~---v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~~ 232 (643)
. ++..-..+++.-+.--+.. ..++.++..+|++|+. ...++||+|--|..+..
T Consensus 727 ~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~---~~~~~Pvii~~pk~l~r 783 (933)
T 2jgd_A 727 PEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQAL---RGMRRPLVVMSPKSLLR 783 (933)
T ss_dssp TTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHH---SSCCCCEEEEECSGGGG
T ss_pred cccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHH---hcCCCcEEEEecchhcc
Confidence 2 3433345566544222333 4566677777777643 22258999999987754
No 155
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=40.60 E-value=14 Score=43.83 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHhCC-----------------CcEEEEcCCc-h-hhHHHHHHHHHHhCCceeecCCCCCCCC--CCCC
Q 040733 257 DELALRQTLKLIVESK-----------------NPVLCVGGGC-L-NSSEELRKFVGLTGIPVTCTTMGLGLFP--CTDE 315 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak-----------------rPvIl~G~g~-~-~~~~~l~~lae~lg~PV~tt~~gkg~~~--~~hp 315 (643)
-+++++.+++.|++.+ .-+.+.|++. . ...-.+.+|++.+|.+-+.+.......+ ..+.
T Consensus 126 WdeAl~~iA~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~ 205 (1015)
T 1kqf_A 126 WEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARSLGMLAVDNQARVXHGPTVASLA 205 (1015)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEEECTTSCEEEEBCSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECGGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccCcccccCceEEEEeCCCCccHHHHHHHHHHHHhCCCCcCCcccccccHHHHHHH
Confidence 4788888888887642 1244445433 2 2334468899989887543211000000 0000
Q ss_pred CcccccCCCCcHHHHHhhhcCCEEEEecCccCccccC---ccc-cc-cCCceEEEEcCCcccccCCCCCCeeEe----cC
Q 040733 316 LCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTS---KLE-DF-ATRAKIVHIDIDSNEIGKVKLPDVSIC----AD 386 (643)
Q Consensus 316 l~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~---~~~-~~-~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D 386 (643)
..+|...+..+ ..-+.++|+||++|+...+.... .+. .. ...+|+|.||+....... .+|..+. .|
T Consensus 206 ~~~G~~~~~~~---~~D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~--~AD~~l~irPGTD 280 (1015)
T 1kqf_A 206 PTFGRGAMTNH---WVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTAS--VADIYAPIRSGTD 280 (1015)
T ss_dssp HHHSCCSCSSC---TGGGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHH--TCSEEECCCTTCH
T ss_pred HHhCCCCCCCC---HHHHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhH--hhCeeeccCCCch
Confidence 11111001111 12478999999999886432111 111 12 245799999987766544 3444433 46
Q ss_pred HHHHHHHHHHHHh
Q 040733 387 AKLVFNRMNMILE 399 (643)
Q Consensus 387 ~~~~L~~L~~~l~ 399 (643)
+..++..+...++
T Consensus 281 ~AL~lam~~~ii~ 293 (1015)
T 1kqf_A 281 ITFLSGVLRYLIE 293 (1015)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6555544444443
No 156
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=40.30 E-value=52 Score=29.69 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceee
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~t 302 (643)
.+.+.+++++++|.+++ -++++|.|.. .....+.....++|.++..
T Consensus 24 l~~~~l~~~~~~i~~a~-~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~ 70 (187)
T 3sho_A 24 TQPEAIEAAVEAICRAD-HVIVVGMGFSAAVAVFLGHGLNSLGIRTTV 70 (187)
T ss_dssp CCHHHHHHHHHHHHHCS-EEEEECCGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHhCC-EEEEEecCchHHHHHHHHHHHHhcCCCEEE
Confidence 36788999999999986 6788888776 4455566666678888864
No 157
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=39.49 E-value=28 Score=34.90 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=41.4
Q ss_pred CCeEEEEecCccccCCHHHHHHHHHhC-CC--eEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHH
Q 040733 502 GAIVVDIDGDGSFIMNLQELAAIKAEN-IP--VKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFA 578 (643)
Q Consensus 502 ~~~Vv~i~GDGsf~m~~~eL~Ta~~~~-lp--v~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA 578 (643)
-|-+|++.|.|+ ++++|..+.+.+ ++ |..||-|+. |...+|
T Consensus 106 ~ri~vl~Sg~g~---nl~~ll~~~~~g~l~~~I~~Visn~~---------------------------------~~~~~A 149 (302)
T 3o1l_A 106 KRVVLMASRESH---CLADLLHRWHSDELDCDIACVISNHQ---------------------------------DLRSMV 149 (302)
T ss_dssp CEEEEEECSCCH---HHHHHHHHHHTTCSCSEEEEEEESSS---------------------------------TTHHHH
T ss_pred cEEEEEEeCCch---hHHHHHHHHHCCCCCcEEEEEEECcH---------------------------------HHHHHH
Confidence 355777888875 678877766554 44 555554442 334678
Q ss_pred hHCCCCEEEeC----ChhHHHHHHHHHHhCCCc
Q 040733 579 EACGIPAARVT----KKKDVRAAIQLMLETPGP 607 (643)
Q Consensus 579 ~a~G~~~~~V~----~~~eL~~al~~al~~~gp 607 (643)
+.+|++.+.+. +.++.++.+.+.++.-+|
T Consensus 150 ~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~ 182 (302)
T 3o1l_A 150 EWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQA 182 (302)
T ss_dssp HTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTC
T ss_pred HHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCC
Confidence 88888888762 233444444444443334
No 158
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=38.84 E-value=28 Score=34.59 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=21.5
Q ss_pred CCeEEEEecCccccCCHHHHHHHHHhC-C--CeEEEEEeC
Q 040733 502 GAIVVDIDGDGSFIMNLQELAAIKAEN-I--PVKILLINN 538 (643)
Q Consensus 502 ~~~Vv~i~GDGsf~m~~~eL~Ta~~~~-l--pv~ivV~NN 538 (643)
-|-+|++.|.|+ ++++|..+.+.+ + .|..||-|+
T Consensus 91 ~ri~vl~Sg~g~---~l~~ll~~~~~g~l~~~i~~Visn~ 127 (286)
T 3n0v_A 91 PKVVIMVSKADH---CLNDLLYRQRIGQLGMDVVAVVSNH 127 (286)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHTTSSCCEEEEEEESS
T ss_pred cEEEEEEeCCCC---CHHHHHHHHHCCCCCcEEEEEEeCc
Confidence 355777888874 677777766553 4 455555554
No 159
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=38.57 E-value=26 Score=31.54 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=45.2
Q ss_pred ccccCCCCCCcHHHHHHHHHHHCCCC----EEEEccCCCcHHHH-HHHhhCC-CeE----------EecCChhHHHHHHH
Q 040733 61 SSRFAPDKPRKGADIIVEALERQGVT----TVFAYPGGASIEIH-QSLTRSN-IRS----------ILPRHEQGGIFAAE 124 (643)
Q Consensus 61 ~~~~~~~~~~~~a~~lv~~L~~~GV~----~vFg~PG~~~~~l~-~al~~~~-i~~----------i~~~hE~~A~~~A~ 124 (643)
.+||+..-.-..-+--.+.|+++|++ .++-+||...+|+. +.|.+++ ..- -..++|..+...+.
T Consensus 17 ~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~ 96 (158)
T 1di0_A 17 QARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVIN 96 (158)
T ss_dssp EECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEECCCCSSBCCHHHHHHHHH
T ss_pred EEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHH
Confidence 45664421122344456889999986 69999999999998 4455432 222 23457777777777
Q ss_pred HHHHHh
Q 040733 125 GYARSS 130 (643)
Q Consensus 125 Gyar~s 130 (643)
|..+++
T Consensus 97 Gl~~v~ 102 (158)
T 1di0_A 97 GMMQVQ 102 (158)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 160
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=38.50 E-value=1.1e+02 Score=27.73 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHh----------hCCCeEEecCChhHHH---H--------HHHHHHHH
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLT----------RSNIRSILPRHEQGGI---F--------AAEGYARS 129 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~----------~~~i~~i~~~hE~~A~---~--------~A~Gyar~ 129 (643)
..++.|++.+.+.+-=++||+-++.. +...+. +.+++.+....+.+-. . ....+...
T Consensus 36 ~~~~~i~~~i~~~~~I~i~G~G~S~~--~A~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 113 (198)
T 2xbl_A 36 KVADACIASIAQGGKVLLAGNGGSAA--DAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQAL 113 (198)
T ss_dssp HHHHHHHHHHHTTCCEEEECSTHHHH--HHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHHHHHCGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCcHhhH--HHHHHHHHHHhhhccCCCCCceEEecCChHHHHHhhccCCHHHHHHHHHHhh
Confidence 34555666667776556666654433 333221 1235555443233211 1 11122222
Q ss_pred hCCcEEEEEccchh-hHHHHHHHHHhhhCCCCEEEEeCCCc
Q 040733 130 SGTPGVCLVSSGPG-VTNIMTGLMDAYSDSIPILAITGQVS 169 (643)
Q Consensus 130 sg~~gv~~~t~GpG-~~N~~~gl~~A~~~~vPvlvItg~~~ 169 (643)
-++--++++-|-.| ..+.+..+..|...+.++|.||+...
T Consensus 114 ~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~ 154 (198)
T 2xbl_A 114 GNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRG 154 (198)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 22223444444444 45677888889999999999998543
No 161
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=37.92 E-value=14 Score=42.56 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=39.3
Q ss_pred hhhcCCEEEEecCccCcccc---Ccccc-c--cCCceEEEEcCCcccccCCCCCCeeEe----cCHHHHHHHHHHHHh
Q 040733 332 AVNECDLLLAAGVRFNERMT---SKLED-F--ATRAKIVHIDIDSNEIGKVKLPDVSIC----ADAKLVFNRMNMILE 399 (643)
Q Consensus 332 ~l~~aDlvL~vG~~~~~~~t---~~~~~-~--~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D~~~~L~~L~~~l~ 399 (643)
-++++|+||++|+...+... ..+.. . ...+|+|.||+....... .+|..|. .|+..++..+...++
T Consensus 175 d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~--~AD~~l~irPGtD~aL~~~m~~~ii~ 250 (802)
T 3ml1_A 175 DFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFD--LADIGIIFKPQTDLAMLNYIANYIIR 250 (802)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGG--TCSEEEECCTTTHHHHHHHHHHHHHH
T ss_pred HHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCchhH--HhccEeccCCCHHHHHHHHHHHHHHH
Confidence 47899999999998643211 11111 1 146799999988877654 3444443 466555544444444
No 162
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=37.65 E-value=25 Score=33.21 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=20.2
Q ss_pred CeEEEEecCccccCCHHHHHHHHHhC-C--CeEEEEEeC
Q 040733 503 AIVVDIDGDGSFIMNLQELAAIKAEN-I--PVKILLINN 538 (643)
Q Consensus 503 ~~Vv~i~GDGsf~m~~~eL~Ta~~~~-l--pv~ivV~NN 538 (643)
|-+|++.|.|+++.. |..+.+.+ + .|..||-|+
T Consensus 9 ri~vl~SG~gsnl~a---ll~~~~~~~l~~~I~~Visn~ 44 (209)
T 4ds3_A 9 RVVIFISGGGSNMEA---LIRAAQAPGFPAEIVAVFSDK 44 (209)
T ss_dssp EEEEEESSCCHHHHH---HHHHHTSTTCSEEEEEEEESC
T ss_pred cEEEEEECCcHHHHH---HHHHHHcCCCCcEEEEEEECC
Confidence 567889999998544 44444332 3 455555554
No 163
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=37.55 E-value=47 Score=29.71 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=29.7
Q ss_pred ccccCCCCCCcHHHHHHHHHHHCCCC---EEEEccCCCcHHHH-HHHhh
Q 040733 61 SSRFAPDKPRKGADIIVEALERQGVT---TVFAYPGGASIEIH-QSLTR 105 (643)
Q Consensus 61 ~~~~~~~~~~~~a~~lv~~L~~~GV~---~vFg~PG~~~~~l~-~al~~ 105 (643)
.+||+. .. ..+--.+.|+++|++ .++-+||...+|+. ..|.+
T Consensus 9 ~arfn~-~~--Ll~gA~~~L~~~G~~~~i~~~~VPGafEiP~aak~la~ 54 (156)
T 2b99_A 9 DTTFAR-VD--MASIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLE 54 (156)
T ss_dssp EESSCS-SC--CHHHHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHH
T ss_pred EEecch-HH--HHHHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHHHh
Confidence 467776 22 235567899999985 34899999999997 34443
No 164
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=37.51 E-value=2.7e+02 Score=26.30 Aligned_cols=89 Identities=11% Similarity=0.017 Sum_probs=57.6
Q ss_pred CCcHHHHHHHHHHH--CCCCEEEEccCCC--------cHHHHHHHhhC-CCeEEec------C-ChhHHHHHHHHHHHHh
Q 040733 69 PRKGADIIVEALER--QGVTTVFAYPGGA--------SIEIHQSLTRS-NIRSILP------R-HEQGGIFAAEGYARSS 130 (643)
Q Consensus 69 ~~~~a~~lv~~L~~--~GV~~vFg~PG~~--------~~~l~~al~~~-~i~~i~~------~-hE~~A~~~A~Gyar~s 130 (643)
...++..+++.|.+ .|-++|.-+-|.. ...+.+++.+. +++++.. . +...+.-++.-+-+..
T Consensus 107 ~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (291)
T 3l49_A 107 NYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKY 186 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhC
Confidence 34688899999999 9999887776542 33455677777 3664331 1 1222333333333334
Q ss_pred C---CcEEEEEccchhhHHHHHHHHHhhhC
Q 040733 131 G---TPGVCLVSSGPGVTNIMTGLMDAYSD 157 (643)
Q Consensus 131 g---~~gv~~~t~GpG~~N~~~gl~~A~~~ 157 (643)
. +|-++++.+...+..++.++.++-..
T Consensus 187 ~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 187 PNEGDVGAIWACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp CSTTSCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCcCCcCEEEECCCchHHHHHHHHHHcCCC
Confidence 4 68888888888888888888877555
No 165
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=37.06 E-value=2.2e+02 Score=27.05 Aligned_cols=148 Identities=9% Similarity=-0.008 Sum_probs=80.1
Q ss_pred CCcHHHHHHHHHHHCCC--CEEEEcc----CC--------CcHHHHHHHhhCC--CeEEec----CChhHHHHHHHHHHH
Q 040733 69 PRKGADIIVEALERQGV--TTVFAYP----GG--------ASIEIHQSLTRSN--IRSILP----RHEQGGIFAAEGYAR 128 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV--~~vFg~P----G~--------~~~~l~~al~~~~--i~~i~~----~hE~~A~~~A~Gyar 128 (643)
...++..+++.|.+.|- ++|.-+- |. +...+.+++.+.+ ++.+.. .+...+.-++.-+-+
T Consensus 117 ~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 196 (304)
T 3gbv_A 117 SHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFR 196 (304)
T ss_dssp HHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHH
Confidence 45688999999999988 8776665 32 2344556676654 443322 233333333444444
Q ss_pred HhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCH-HHHhh-ccceeeeEeCCcCcHHH-
Q 040733 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPV-VEVTR-YMTKHNYLVLDVDDIPR- 205 (643)
Q Consensus 129 ~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~-~~~~~-~~tk~~~~v~~~~~i~~- 205 (643)
...+|-++++.... +..++.++.++-.+.+.|+-+- ..+. ...+. +++..+... +++++.+
T Consensus 197 ~~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d--------------~~~~~~~~~~~~~~~~tv~~-~~~~~g~~ 260 (304)
T 3gbv_A 197 EHPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYD--------------LLERNVTCLKEGTVSFLIAQ-QPELQGFN 260 (304)
T ss_dssp HCTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEES--------------CCHHHHHHHHHTSEEEEEEC-CHHHHHHH
T ss_pred hCCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeC--------------CCHHHHHHHHcCceEEEEEe-CHHHHHHH
Confidence 44578888888887 7778888877655333222211 1111 22332 334323333 3444433
Q ss_pred HHHHHHHHhhcCCCCeEEEEcccchhh
Q 040733 206 IIKEAFFIATSGRPGPVLIDIPVDVQL 232 (643)
Q Consensus 206 ~l~~A~~~A~s~~~GPV~i~iP~Dv~~ 232 (643)
.++..++....+...|-.+.+|..+..
T Consensus 261 av~~l~~~i~~~~~~~~~~~~~~~lv~ 287 (304)
T 3gbv_A 261 SIKTLCDHLIFRKEVACTNYMPIDLLT 287 (304)
T ss_dssp HHHHHHHHHTSCCCCCSEEECCCEEEC
T ss_pred HHHHHHHHHhcCCCCCceeecCcEEEE
Confidence 444444444345555667777776654
No 166
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=36.79 E-value=41 Score=30.30 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceee
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~t 302 (643)
++ .+++++++|.++++-++++|.|.. .....+.....++|.++..
T Consensus 35 ~~-~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~ 80 (183)
T 2xhz_A 35 NQ-NFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFF 80 (183)
T ss_dssp SH-HHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred HH-HHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHhcCceEEE
Confidence 55 899999999999878999999775 3344444444456777753
No 167
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=35.52 E-value=38 Score=39.27 Aligned_cols=141 Identities=13% Similarity=0.034 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhCC-----CcEEEEcC-----Cch-hhHHHHHHHHHHhCCceeec-CCCCCCCCC-----CCCCc-c
Q 040733 257 DELALRQTLKLIVESK-----NPVLCVGG-----GCL-NSSEELRKFVGLTGIPVTCT-TMGLGLFPC-----TDELC-L 318 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak-----rPvIl~G~-----g~~-~~~~~l~~lae~lg~PV~tt-~~gkg~~~~-----~hpl~-l 318 (643)
-+++++.+++.|++.+ .-+.+.+. |.. .....+.+|+..+|.+-+.. ....+.+.. ..+.. +
T Consensus 114 WdeAl~~iA~kl~~i~~~~G~~si~~~~~~~~~~g~~~~~~~~~~rf~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 193 (875)
T 1ti6_A 114 WDEATDIVVAEINRIKHAYGPSAILSTPSSHHMWGNVGYRHSTYFRFMNMMGFTYADHNPDSWEGWHWGGMHMWGFSWRL 193 (875)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGEEEECCSCCCSCTTTSTTTHHHHHHHHHCCEEEECCCTTTHHHHHTHHHHHCCGGGT
T ss_pred HHHHHHHHHHHHHHHHHHhCcceEEeecCCCcccCcccchhHHHHHHHHhcCCCccccCcCccCccchhhhcccccceee
Confidence 5678888888887643 34555432 221 22345788999999442211 111111110 01222 3
Q ss_pred cccCCCCcHHHHHhhhcCCEEEEecCccCccccC--------ccc--cccCCceEEEEcCCcccccCCC-CCCeeEe--c
Q 040733 319 RMVGMFGTVYANYAVNECDLLLAAGVRFNERMTS--------KLE--DFATRAKIVHIDIDSNEIGKVK-LPDVSIC--A 385 (643)
Q Consensus 319 G~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~--------~~~--~~~~~~~iI~Id~d~~~i~~~~-~~~~~i~--~ 385 (643)
|...+.+ ...+.+.++|+||++|+.. +.... .+. .....+|+|.||+......... ...+.|. .
T Consensus 194 G~~~~~~--~~~~~~~~ad~il~~G~Np-~~~p~~~~~~~~~~~~~~a~~~G~klivIDPr~t~ta~~~Ad~~l~irPGT 270 (875)
T 1ti6_A 194 GNPEQYD--LLEDGLKHAEMIVFWSSDP-ETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHMNHTARLVADKWFSPKIGT 270 (875)
T ss_dssp TCCCCTT--HHHHHHHHCSEEEEESCCH-HHHCSSSCTTTTHHHHHHHHHTTCEEEEECSBCCHHHHHHCSEEECCCTTC
T ss_pred ecccccC--CcHhHHhcCCEEEEECCCh-hhCCccCCCccchHHHHHHHHcCCeEEEECCCCCCcccccCCEEeccCCCc
Confidence 3321222 2233478999999999986 43211 111 1124579999998776543311 1222332 4
Q ss_pred CHHHHHHHHHHHHhh
Q 040733 386 DAKLVFNRMNMILES 400 (643)
Q Consensus 386 D~~~~L~~L~~~l~~ 400 (643)
|...++..+...++.
T Consensus 271 D~aL~~am~~~ii~e 285 (875)
T 1ti6_A 271 DHALSFAIAYTWLKE 285 (875)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 665555444444443
No 168
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=35.30 E-value=1.3e+02 Score=26.63 Aligned_cols=81 Identities=23% Similarity=0.263 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCC-------------CcHHHHH----HHhhCCCeEEecCChhHHHHHHHHHHHHhCC
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGG-------------ASIEIHQ----SLTRSNIRSILPRHEQGGIFAAEGYARSSGT 132 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~-------------~~~~l~~----al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~ 132 (643)
...-+.+++.|++.| .||..+-. ....+++ .+.++++=+...-....+..+=.|||.+.||
T Consensus 18 ~~~~~~i~~~L~~~G--~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algk 95 (152)
T 4fyk_A 18 QALYARIVSRLRRYG--KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVTQPSLGVGYELGRAVALGK 95 (152)
T ss_dssp HHHHHHHHHHHTTTS--EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECSSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcC--cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCC
Confidence 345688999999999 46543221 1122332 3445662222223556666777888888888
Q ss_pred cEEEEEc--cchhhHHHHHHHH
Q 040733 133 PGVCLVS--SGPGVTNIMTGLM 152 (643)
Q Consensus 133 ~gv~~~t--~GpG~~N~~~gl~ 152 (643)
|.+|+.. +|.-.+.++.|..
T Consensus 96 PV~~l~~~~~~~~ls~mi~G~~ 117 (152)
T 4fyk_A 96 PILCLFRPQSGRVLSAMIRGAA 117 (152)
T ss_dssp CEEEEECGGGSCCCCHHHHHHC
T ss_pred eEEEEEeCCccchhHHHHcCCC
Confidence 8888766 2334444554543
No 169
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=35.10 E-value=1.9e+02 Score=33.47 Aligned_cols=114 Identities=16% Similarity=0.074 Sum_probs=66.7
Q ss_pred eEE-ecCChhHH-H---HHHHHHHHHhC--CcEEEEEccchhhHHHHHHHHHh-hhCCCCEEEEeCCCcccccCCC--CC
Q 040733 109 RSI-LPRHEQGG-I---FAAEGYARSSG--TPGVCLVSSGPGVTNIMTGLMDA-YSDSIPILAITGQVSQKLLGTD--AF 178 (643)
Q Consensus 109 ~~i-~~~hE~~A-~---~~A~Gyar~sg--~~gv~~~t~GpG~~N~~~gl~~A-~~~~vPvlvItg~~~~~~~g~~--~~ 178 (643)
|++ ....|++| + .+|.|||...+ +|-+++- +-=+..-+.--+..+ ...+.++++ .+.......+.+ .+
T Consensus 563 R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~y-s~F~~qRa~Dqi~~~~d~~~~~v~l-~~~~~~~~~g~dG~tH 640 (886)
T 2qtc_A 563 QILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYY-SMFGFQRIGDLCWAAGDQQARGFLI-GGTSGRTTLNGEGLQH 640 (886)
T ss_dssp CBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEE-GGGSHHHHHHHHHHHHHTTCCCEEE-EESCSTTTSTTTCTTT
T ss_pred ceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEe-hHHHHHHHHHHHHHHHHHhcCCEEE-EEecCcccCCCCCCcc
Confidence 444 48899997 4 59999997762 5543322 111222233323322 334455554 333222222322 46
Q ss_pred CccCHHHHhhccce-eeeEeCCcCcHHHHHHHHHHHhhcCCCCe----EEEEccc
Q 040733 179 QEIPVVEVTRYMTK-HNYLVLDVDDIPRIIKEAFFIATSGRPGP----VLIDIPV 228 (643)
Q Consensus 179 Q~~d~~~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~s~~~GP----V~i~iP~ 228 (643)
|.+....+++.+.. ..+...++.++..+++.|++... || |+|-+|.
T Consensus 641 q~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~----gP~~e~v~i~~~r 691 (886)
T 2qtc_A 641 EDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMY----GEKQENVYYYITT 691 (886)
T ss_dssp CCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHH----STTCCCCEEEEEC
T ss_pred CCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcC----CCCCceEEEEEeC
Confidence 77778888988864 34445667788888888887532 68 9988875
No 170
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=34.94 E-value=26 Score=31.46 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=45.4
Q ss_pred ccccCCCCCCcHHHHHHHHHHHCCCC---EEEEccCCCcHHHH-HHHhhCC-CeEE----------ecCChhHHHHHHHH
Q 040733 61 SSRFAPDKPRKGADIIVEALERQGVT---TVFAYPGGASIEIH-QSLTRSN-IRSI----------LPRHEQGGIFAAEG 125 (643)
Q Consensus 61 ~~~~~~~~~~~~a~~lv~~L~~~GV~---~vFg~PG~~~~~l~-~al~~~~-i~~i----------~~~hE~~A~~~A~G 125 (643)
.+||+..-.-..-+--.+.|+++|++ .+|-+||...+|+. +.|.+++ ..-| ..++|..+...+.|
T Consensus 20 ~arfn~~I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~g 99 (156)
T 1c2y_A 20 VARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSG 99 (156)
T ss_dssp EESTTHHHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSSTHHHHHHHHHHHH
T ss_pred EEeCcHHHHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHHHHHHHHHHH
Confidence 46665432223344456889999985 79999999999998 4454432 2222 23477777777777
Q ss_pred HHHHh
Q 040733 126 YARSS 130 (643)
Q Consensus 126 yar~s 130 (643)
..+++
T Consensus 100 l~~v~ 104 (156)
T 1c2y_A 100 VLSAG 104 (156)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 171
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=34.39 E-value=71 Score=29.97 Aligned_cols=46 Identities=26% Similarity=0.283 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHh-C---CCcEEEEcCCch-hhHHHHHHHHHHhCCceee
Q 040733 257 DELALRQTLKLIVE-S---KNPVLCVGGGCL-NSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 257 ~~~~i~~~~~~L~~-A---krPvIl~G~g~~-~~~~~l~~lae~lg~PV~t 302 (643)
+.+.+++++++|.+ + .+-++++|.|.. .....+.....++|.++..
T Consensus 40 d~~~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~ 90 (220)
T 3etn_A 40 VTDAYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCSTGIPSVF 90 (220)
T ss_dssp CCTHHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHHhcCCcEEE
Confidence 45679999999998 2 566788888766 3445555555568888864
No 172
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=33.47 E-value=54 Score=31.00 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=19.8
Q ss_pred CeEEEEecCccccCCHHHHHHHHHhCC--CeEEEEEeC
Q 040733 503 AIVVDIDGDGSFIMNLQELAAIKAENI--PVKILLINN 538 (643)
Q Consensus 503 ~~Vv~i~GDGsf~m~~~eL~Ta~~~~l--pv~ivV~NN 538 (643)
|-+|++.|.|+.+ +.|..+.+.++ .|..||-|+
T Consensus 7 riavl~SG~Gsnl---~all~~~~~~~~~eI~~Vis~~ 41 (215)
T 3tqr_A 7 PIVVLISGNGTNL---QAIIGAIQKGLAIEIRAVISNR 41 (215)
T ss_dssp EEEEEESSCCHHH---HHHHHHHHTTCSEEEEEEEESC
T ss_pred EEEEEEeCCcHHH---HHHHHHHHcCCCCEEEEEEeCC
Confidence 4567788998875 44555555444 455555554
No 173
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=33.21 E-value=2.4e+02 Score=26.83 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=53.2
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCC--------cHHHHHHHhhCCCeEEe-----cCChhHHHH-HHHHHHHHhCCcE
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGA--------SIEIHQSLTRSNIRSIL-----PRHEQGGIF-AAEGYARSSGTPG 134 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~--------~~~l~~al~~~~i~~i~-----~~hE~~A~~-~A~Gyar~sg~~g 134 (643)
...++..+++.|.+.|-++|--+-|.. ...+.+++.+.++.+.. .......++ ++.-+-+...+|-
T Consensus 111 ~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (288)
T 3gv0_A 111 NEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPD 190 (288)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCS
T ss_pred cHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCc
Confidence 346889999999999999987776653 23455677776644321 122222222 2222222234677
Q ss_pred EEEEccchhhHHHHHHHHHhh
Q 040733 135 VCLVSSGPGVTNIMTGLMDAY 155 (643)
Q Consensus 135 v~~~t~GpG~~N~~~gl~~A~ 155 (643)
++++.+..-+..++.++.++-
T Consensus 191 ai~~~~d~~A~g~~~al~~~g 211 (288)
T 3gv0_A 191 GIVSISGSSTIALVAGFEAAG 211 (288)
T ss_dssp EEEESCHHHHHHHHHHHHTTT
T ss_pred EEEEcCcHHHHHHHHHHHHcC
Confidence 888887777777777776553
No 174
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=32.78 E-value=87 Score=26.01 Aligned_cols=65 Identities=22% Similarity=0.402 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhCCceee-cCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceE
Q 040733 285 SSEELRKFVGLTGIPVTC-TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKI 363 (643)
Q Consensus 285 ~~~~l~~lae~lg~PV~t-t~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~i 363 (643)
+.+.|.+-|+++|+.+-. |-.+.|+- +++. .+-+.++|+||+.+....+ .+.| ..+++
T Consensus 21 AaeaL~~aA~~~G~~ikVEtqGs~G~~---n~Lt------------~~~I~~Ad~VIiA~d~~v~-----~~RF-~GK~v 79 (106)
T 2r48_A 21 AAENLQKAADRLGVSIKVETQGGIGVE---NKLT------------EEEIREADAIIIAADRSVN-----KDRF-IGKKL 79 (106)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEETTEEE---SCCC------------HHHHHHCSEEEEEESSCCC-----CGGG-TTSBE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCcc---CCCC------------HHHHHhCCEEEEEeCCccC-----HhHc-CCCeE
Confidence 578899999999999844 44333322 2221 3468899999999876432 1223 34577
Q ss_pred EEEcCCc
Q 040733 364 VHIDIDS 370 (643)
Q Consensus 364 I~Id~d~ 370 (643)
+++++..
T Consensus 80 ~~~~v~~ 86 (106)
T 2r48_A 80 LSVGVQD 86 (106)
T ss_dssp EEECHHH
T ss_pred EEeCHHH
Confidence 7775433
No 175
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=31.81 E-value=1.3e+02 Score=26.80 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceee
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~t 302 (643)
.+.+.+++++++|.+++ -++++|.|.. .....+.....++|.++..
T Consensus 22 l~~~~i~~~~~~i~~a~-~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~ 68 (186)
T 1m3s_A 22 ISNEEADQLADHILSSH-QIFTAGAGRSGLMAKSFAMRLMHMGFNAHI 68 (186)
T ss_dssp CCHHHHHHHHHHHHHCS-CEEEECSHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCHHHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHHHHHHhcCCeEEE
Confidence 36788999999999987 5777888765 3344555555668888754
No 176
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=31.75 E-value=1e+02 Score=27.43 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceee
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~t 302 (643)
+.+.+++++++|.+++ -++++|.|.. .....+.....++|.++..
T Consensus 26 ~~~~i~~~~~~i~~a~-~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~ 71 (180)
T 1jeo_A 26 WKNKLDSLIDRIIKAK-KIFIFGVGRSGYIGRCFAMRLMHLGFKSYF 71 (180)
T ss_dssp HHHHHHHHHHHHHHCS-SEEEECCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHhCC-EEEEEeecHHHHHHHHHHHHHHHcCCeEEE
Confidence 5678999999999987 5777888765 3444555555568888764
No 177
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=31.62 E-value=28 Score=35.18 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN 107 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~ 107 (643)
...-+.+++.|+++|++.+|.+-|+.++.-...|.+.+
T Consensus 79 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~ 116 (319)
T 1zxx_A 79 EEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRHG 116 (319)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHhC
Confidence 45788999999999999999999999998888887743
No 178
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=31.35 E-value=4.1e+02 Score=26.56 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhC----CCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhh
Q 040733 258 ELALRQTLKLIVES----KNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAV 333 (643)
Q Consensus 258 ~~~i~~~~~~L~~A----krPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l 333 (643)
.+.+-++++.|.+. .--++++|.|.....+.+.++++.++ .++. +. |.........++
T Consensus 267 ~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~--------------~~---g~~~~~~~~~~~ 328 (439)
T 3fro_A 267 VDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKV--------------IT---EMLSREFVRELY 328 (439)
T ss_dssp HHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-TEEE--------------EC---SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC-CEEE--------------Ec---CCCCHHHHHHHH
Confidence 34444555555542 33477788876555577888888877 4432 12 222344566788
Q ss_pred hcCCEEEEecCccCccccCccccccCCceEEEEcCCcc-cccCCCCCCeeEe-cCHHHHHHHHHHHHh
Q 040733 334 NECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSN-EIGKVKLPDVSIC-ADAKLVFNRMNMILE 399 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~-~i~~~~~~~~~i~-~D~~~~L~~L~~~l~ 399 (643)
..||++|.--. ...+-..-++.......+|.-+.... ++-... ....+. .|..++.++|...+.
T Consensus 329 ~~adv~v~ps~-~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 329 GSVDFVIIPSY-FEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp TTCSEEEECBS-CCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred HHCCEEEeCCC-CCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 99998876532 21111112334445666776654322 222122 233333 588888888887776
No 179
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=31.22 E-value=42 Score=32.17 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=48.3
Q ss_pred CeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccC------------CH
Q 040733 451 ETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM------------NL 518 (643)
Q Consensus 451 d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m------------~~ 518 (643)
..+++++.|+. -+.. |.+|+++...|.||+++.- +++..+..|+++.|..+..- +.
T Consensus 4 k~vlVTgG~T~-------E~ID-pVR~ItN~SSG~mG~aiA~----~~~~~Ga~V~lv~~~~~~~~~~~~~~~~~~v~s~ 71 (232)
T 2gk4_A 4 MKILVTSGGTS-------EAID-SVRSITNHSTGHLGKIITE----TLLSAGYEVCLITTKRALKPEPHPNLSIREITNT 71 (232)
T ss_dssp CEEEEECSBCE-------EESS-SSEEEEECCCCHHHHHHHH----HHHHTTCEEEEEECTTSCCCCCCTTEEEEECCSH
T ss_pred CEEEEeCCCcc-------cccC-ceeeccCCCCCHHHHHHHH----HHHHCCCEEEEEeCCccccccCCCCeEEEEHhHH
Confidence 45677776643 2233 8999999887777765544 34444778999999876432 46
Q ss_pred HHHHHHHHhCCCeEEEEEeCCC
Q 040733 519 QELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 519 ~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+|+..+++...+-.=+++||-+
T Consensus 72 ~em~~~v~~~~~~~Dili~aAA 93 (232)
T 2gk4_A 72 KDLLIEMQERVQDYQVLIHSMA 93 (232)
T ss_dssp HHHHHHHHHHGGGCSEEEECSB
T ss_pred HHHHHHHHHhcCCCCEEEEcCc
Confidence 6766665443332235566665
No 180
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=31.05 E-value=26 Score=35.39 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeE
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRS 110 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~ 110 (643)
...-+.+++.|+++|++.+|.+-|+.++.-...|.+.+|.+
T Consensus 80 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~i~v 120 (320)
T 1pfk_A 80 ENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPC 120 (320)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhhCCCE
Confidence 34778999999999999999999999988888887744333
No 181
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=30.75 E-value=45 Score=31.83 Aligned_cols=79 Identities=23% Similarity=0.263 Sum_probs=47.0
Q ss_pred CeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcccc----------CCHHH
Q 040733 451 ETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFI----------MNLQE 520 (643)
Q Consensus 451 d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~----------m~~~e 520 (643)
..+++++.++. -+. .|.+|+++...|.||+++ .-+++..+..|+++.|+.+.. -+..+
T Consensus 9 k~vlVTgG~T~-------E~i-DpVR~itN~SSg~iG~ai----A~~~~~~Ga~V~l~~~~~~l~~~~g~~~~dv~~~~~ 76 (226)
T 1u7z_A 9 LNIMITAGPTR-------EPL-DPVRYISDHSSGKMGFAI----AAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALE 76 (226)
T ss_dssp CEEEEEESBCE-------EES-SSSEEEEECCCSHHHHHH----HHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHH
T ss_pred CEEEEECCCCC-------ccc-CceeeccCCCccHHHHHH----HHHHHHCCCEEEEEECCcccccCCCCeEEccCcHHH
Confidence 56777776643 222 389999988766666544 444444467788888865432 24566
Q ss_pred HHHHHHhCCCeEEEEEeCCCc
Q 040733 521 LAAIKAENIPVKILLINNQYL 541 (643)
Q Consensus 521 L~Ta~~~~lpv~ivV~NN~~~ 541 (643)
+..++....+-.=+++||-+-
T Consensus 77 ~~~~v~~~~~~~Dili~~Aav 97 (226)
T 1u7z_A 77 MEAAVNASVQQQNIFIGCAAV 97 (226)
T ss_dssp HHHHHHHHGGGCSEEEECCBC
T ss_pred HHHHHHHhcCCCCEEEECCcc
Confidence 665554433323356677663
No 182
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=30.53 E-value=1.3e+02 Score=27.20 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHH--HHHHh------hCCCeEEecCChhHHH-----------HHHHH-HHHHh
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEI--HQSLT------RSNIRSILPRHEQGGI-----------FAAEG-YARSS 130 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l--~~al~------~~~i~~i~~~hE~~A~-----------~~A~G-yar~s 130 (643)
...+.+++.|.+.+-=++||+-++..... ...|. +.++..+....+.+.. ..+.- -...+
T Consensus 29 ~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~ 108 (196)
T 2yva_A 29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGH 108 (196)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCC
Confidence 45677888898887767888755443222 12233 3345555543221110 00000 02222
Q ss_pred CCcEEEEEccch-hhHHHHHHHHHhhhCCCCEEEEeCCCcc
Q 040733 131 GTPGVCLVSSGP-GVTNIMTGLMDAYSDSIPILAITGQVSQ 170 (643)
Q Consensus 131 g~~gv~~~t~Gp-G~~N~~~gl~~A~~~~vPvlvItg~~~~ 170 (643)
.+ -++++-|.. ...+.+..+..|...+.++|.||+....
T Consensus 109 ~~-DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s 148 (196)
T 2yva_A 109 AG-DVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_dssp TT-CEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCH
T ss_pred CC-CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 22 344444444 4567788899999999999999986543
No 183
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=30.40 E-value=1.3e+02 Score=26.93 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcHHHHHHH----hhCCCeEEecC---ChhHHHHHHHHHHHHhCCcEEEEEccchh-
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSL----TRSNIRSILPR---HEQGGIFAAEGYARSSGTPGVCLVSSGPG- 143 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al----~~~~i~~i~~~---hE~~A~~~A~Gyar~sg~~gv~~~t~GpG- 143 (643)
--+.+++.|.+..-=++||+ +.+..+...+ .+.++..+... ++.. .-....+.+ -++++-|-.|
T Consensus 28 ~l~~~~~~i~~a~~I~i~G~--G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~-----~~~~~~~~~-d~~i~iS~sG~ 99 (187)
T 3sho_A 28 AIEAAVEAICRADHVIVVGM--GFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLT-----ITLANLRPT-DLMIGVSVWRY 99 (187)
T ss_dssp HHHHHHHHHHHCSEEEEECC--GGGHHHHHHHHHHHHHTTCCEEEECCCTHHHH-----HHHHTCCTT-EEEEEECCSSC
T ss_pred HHHHHHHHHHhCCEEEEEec--CchHHHHHHHHHHHHhcCCCEEEecCCchhHH-----HHHhcCCCC-CEEEEEeCCCC
Confidence 44567888888754445554 3344444433 34554444333 2321 112233333 4555555555
Q ss_pred hHHHHHHHHHhhhCCCCEEEEeCCCc
Q 040733 144 VTNIMTGLMDAYSDSIPILAITGQVS 169 (643)
Q Consensus 144 ~~N~~~gl~~A~~~~vPvlvItg~~~ 169 (643)
..+.+..+..|...++|+|.||+...
T Consensus 100 t~~~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 100 LRDTVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 45677888889999999999998543
No 184
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=29.58 E-value=60 Score=27.64 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEe
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSIL 112 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~ 112 (643)
....+++.+.+.|++.|.--+|.....+.+.+.+.||+++.
T Consensus 70 ~v~~~v~e~~~~g~k~v~~~~G~~~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 70 NQLSEYNYILSLKPKRVIFNPGTENEELEEILSENGIEPVI 110 (122)
T ss_dssp HHGGGHHHHHHHCCSEEEECTTCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCCEEEECCCCChHHHHHHHHHcCCeEEC
Confidence 33446677778899999999999999999999888899884
No 185
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=29.48 E-value=1.5e+02 Score=28.39 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhCCCc--EEEEcCCchhhHHHHHHHHHHhCCcee-ecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhc
Q 040733 259 LALRQTLKLIVESKNP--VLCVGGGCLNSSEELRKFVGLTGIPVT-CTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNE 335 (643)
Q Consensus 259 ~~i~~~~~~L~~AkrP--vIl~G~g~~~~~~~l~~lae~lg~PV~-tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~ 335 (643)
..+..|++.+...++| ++++|..- .+.+.+.++|++.|.+.+ .. .+.-|++--..+ .....
T Consensus 51 ~~L~~A~~~i~~i~~~~~iLfVgtk~-~~~~~V~~~A~~~g~~yv~~~-----------RWlgG~LTN~~t----~~~~~ 114 (241)
T 2xzm_B 51 QKIKLAARVIAAVQHPEDVMVVCSRI-YGQRAAIKFAGYTHCKSTSSS-----------RWTPGTLTNYQT----LKYEE 114 (241)
T ss_dssp HHHHHHHHHHHHCSSGGGEEEECCSH-HHHHHHHHHHHHHTCBCCCCS-----------SCCTTTTTCTTC----TTCCC
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECCH-HHHHHHHHHHHHhCCEEeccc-----------cccCCcccCccc----cccCC
Confidence 5677788888876544 77887622 456789999999998866 42 121222210001 13467
Q ss_pred CCEEEEecCccC
Q 040733 336 CDLLLAAGVRFN 347 (643)
Q Consensus 336 aDlvL~vG~~~~ 347 (643)
.|+|+++..+-+
T Consensus 115 PdlliV~Dp~~e 126 (241)
T 2xzm_B 115 PRVLIVTDPRSD 126 (241)
T ss_dssp CSEEEESCTTTT
T ss_pred CCEEEEECCCcc
Confidence 999999987643
No 186
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=29.31 E-value=3.6e+02 Score=25.26 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=49.0
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCC--------cHHHHHHHhhCCCeE--EecCChhHHHHHH-HHHHHH-hCCcEEE
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGA--------SIEIHQSLTRSNIRS--ILPRHEQGGIFAA-EGYARS-SGTPGVC 136 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~--------~~~l~~al~~~~i~~--i~~~hE~~A~~~A-~Gyar~-sg~~gv~ 136 (643)
...++..+++.|.+.|-++|--+-|.. ...+.+++.+.++++ +........++.+ .-+-+. ..+|-++
T Consensus 102 ~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai 181 (277)
T 3cs3_A 102 NRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQPQTEPVDV 181 (277)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCSSHHHHHHHHHHHTTSCCCSSEEE
T ss_pred cHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCeeEEeCCCChhHHHHHHHHHHhcCCCCCcEE
Confidence 346888899999999998876665542 234556777777543 2222222222222 222111 2467888
Q ss_pred EEccchhhHHHHHHHHHh
Q 040733 137 LVSSGPGVTNIMTGLMDA 154 (643)
Q Consensus 137 ~~t~GpG~~N~~~gl~~A 154 (643)
++.+..-+..++.++.++
T Consensus 182 ~~~~d~~a~g~~~al~~~ 199 (277)
T 3cs3_A 182 FAFNDEMAIGVYKYVAET 199 (277)
T ss_dssp EESSHHHHHHHHHHHTTS
T ss_pred EEcChHHHHHHHHHHHHc
Confidence 887766555555555443
No 187
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=29.13 E-value=35 Score=30.63 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=44.7
Q ss_pred ccccCCCCCCcHHHHHHHHHHHCCCC----EEEEccCCCcHHHH-HHHhhC---C-CeEE-------ecCChhHHHHHHH
Q 040733 61 SSRFAPDKPRKGADIIVEALERQGVT----TVFAYPGGASIEIH-QSLTRS---N-IRSI-------LPRHEQGGIFAAE 124 (643)
Q Consensus 61 ~~~~~~~~~~~~a~~lv~~L~~~GV~----~vFg~PG~~~~~l~-~al~~~---~-i~~i-------~~~hE~~A~~~A~ 124 (643)
.+||+..-.-..-+--.+.|+++|++ .++-+||...+|+. +.|.++ + +=.+ ..++|..+...+.
T Consensus 18 ~arfn~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~ 97 (157)
T 2obx_A 18 RARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLGTAFVVNGGIYRHEFVASAVID 97 (157)
T ss_dssp EECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEEEEEECCCCSSBCCHHHHHHHHH
T ss_pred EeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHH
Confidence 45664421123344456889999986 59999999999998 444432 2 2222 2347777777777
Q ss_pred HHHHHh
Q 040733 125 GYARSS 130 (643)
Q Consensus 125 Gyar~s 130 (643)
|..+++
T Consensus 98 Gl~~v~ 103 (157)
T 2obx_A 98 GMMNVQ 103 (157)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 188
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=29.10 E-value=1.6e+02 Score=27.04 Aligned_cols=74 Identities=8% Similarity=0.061 Sum_probs=48.0
Q ss_pred HhCCCeEEEEEeCCCchhhHHHHHHh-hcccccccccCCCCCCCCCCCCHHHHHhHCCC--CEEEeCChhHHHHHHHHHH
Q 040733 526 AENIPVKILLINNQYLGMNVEYEDRY-FEANRANSFLGDPLRKSEIFPDMLKFAEACGI--PAARVTKKKDVRAAIQLML 602 (643)
Q Consensus 526 ~~~lpv~ivV~NN~~~g~~~~~q~~~-~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~--~~~~V~~~~eL~~al~~al 602 (643)
+..+++-||-+.-.+|.+++.+.... |..+..-..+ .....++..+++.+|. .-+.+++.+|+++.++++.
T Consensus 66 r~~~~iPVV~I~~s~~Dil~al~~a~~~~~kIavvg~------~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~ 139 (196)
T 2q5c_A 66 KKSVSIPSISIKVTRFDTMRAVYNAKRFGNELALIAY------KHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVK 139 (196)
T ss_dssp HTTCSSCEEEECCCHHHHHHHHHHHGGGCSEEEEEEE------SSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHH
T ss_pred HHhCCCCEEEEcCCHhHHHHHHHHHHhhCCcEEEEeC------cchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHH
Confidence 34455666677777777777765542 2222211111 1234578889999997 4568899999999999987
Q ss_pred hCC
Q 040733 603 ETP 605 (643)
Q Consensus 603 ~~~ 605 (643)
+.+
T Consensus 140 ~~G 142 (196)
T 2q5c_A 140 TEN 142 (196)
T ss_dssp HTT
T ss_pred HCC
Confidence 755
No 189
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=28.35 E-value=3.4e+02 Score=25.42 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCC------cHHHHHHHhhCCCeEE----ecCCh-hHHHHHHHHHHHHhCCcEEEE
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGA------SIEIHQSLTRSNIRSI----LPRHE-QGGIFAAEGYARSSGTPGVCL 137 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~------~~~l~~al~~~~i~~i----~~~hE-~~A~~~A~Gyar~sg~~gv~~ 137 (643)
...++..+++.|.+.|-++|--+-|.. ...+.+++.+.++... ..... ..+.-++.-+-+...+|-+++
T Consensus 102 ~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 181 (280)
T 3gyb_A 102 DFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIF 181 (280)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEE
Confidence 346889999999999999887777764 3445566766663222 22222 222233333333445788888
Q ss_pred EccchhhHHHHHHHHHhhh
Q 040733 138 VSSGPGVTNIMTGLMDAYS 156 (643)
Q Consensus 138 ~t~GpG~~N~~~gl~~A~~ 156 (643)
+.+...+..++.++.++-.
T Consensus 182 ~~~d~~a~g~~~al~~~g~ 200 (280)
T 3gyb_A 182 SSNDITAIGALGAARELGL 200 (280)
T ss_dssp ESSHHHHHHHHHHHHHHTC
T ss_pred ECChHHHHHHHHHHHHcCC
Confidence 8888888888888877743
No 190
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=28.21 E-value=1.3e+02 Score=29.86 Aligned_cols=60 Identities=8% Similarity=0.076 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCC
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDEL 316 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl 316 (643)
++....++++.|....+.++++|..+......+..++++.++|++........+....++
T Consensus 59 ~p~~a~~~a~~li~~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~ 118 (353)
T 4gnr_A 59 ETAEAASVTTNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQDY 118 (353)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTTTCTT
T ss_pred CHHHHHHHHHHHHhhCCceEEeccccCcccceehhhhhccCcceEeecccccccccCCcc
Confidence 333334444444455677888888777777788899999999999865544444443443
No 191
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=28.04 E-value=39 Score=29.27 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=22.5
Q ss_pred CcEEEEcCCchhhHHHHHHHHHHhCCceeecCC
Q 040733 273 NPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 273 rPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~ 305 (643)
..+|+.|+. ...+++.++|++.|+||+.|..
T Consensus 76 ~~iIlt~g~--~~~~~i~~~A~~~~ipvl~t~~ 106 (139)
T 2ioj_A 76 RCLILTGNL--EPVQLVLTKAEERGVPVILTGH 106 (139)
T ss_dssp EEEEEETTC--CCCHHHHHHHHHHTCCEEECSS
T ss_pred cEEEEcCCC--CCCHHHHHHHHHCCCeEEEECC
Confidence 345666652 3467788999999999998753
No 192
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=28.02 E-value=48 Score=31.37 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=21.9
Q ss_pred HHHHhHCCCCEEEeC-----ChhHHHHHHHHHHhCCCcEEEE
Q 040733 575 LKFAEACGIPAARVT-----KKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 575 ~~lA~a~G~~~~~V~-----~~~eL~~al~~al~~~gp~lIe 611 (643)
.+.|+.+|++.+.+. +.+++.+.+.+.++.-+|=+|-
T Consensus 53 ~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv 94 (215)
T 3da8_A 53 AEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVV 94 (215)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEE
Confidence 356777788777763 2345556666666555554443
No 193
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=27.88 E-value=15 Score=42.42 Aligned_cols=119 Identities=14% Similarity=0.091 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhCC-----CcEEEE--c---CCch-hhHHHHHHHHHHhCCceeecC-CCCCCCCCCCCCcccccCCC
Q 040733 257 DELALRQTLKLIVESK-----NPVLCV--G---GGCL-NSSEELRKFVGLTGIPVTCTT-MGLGLFPCTDELCLRMVGMF 324 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak-----rPvIl~--G---~g~~-~~~~~l~~lae~lg~PV~tt~-~gkg~~~~~hpl~lG~~g~~ 324 (643)
-+++++.+++.|++.+ ..+.+. | .|.. .....+.+|+..+|-.+-+.. ..-+..-...+..+|.....
T Consensus 119 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~g~~~~g~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 198 (829)
T 1tmo_A 119 WDKALTLFKHSLDEVQTQYGPSGLHAGQTGWRATGQLHSSTSHMQRAVGMHGNYVKKIGDYSTGAGQTILPYVLGSTEVY 198 (829)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGEECCCCCCCCSCTTTCHHHHHHHHHHTTCCCBEEECCSSSTTHHHHHHHHTSSCCTT
T ss_pred HHHHHHHHHHHHHHHHHhhCCceEEeccccCcccccccchhHHHHHHHHhcCCcccCCCCcchhhhhhcccceEeccccc
Confidence 5778888888877643 334331 1 1222 234557889998886432110 01000000011222221111
Q ss_pred C-cHHHHHhhhcCCEEEEecCccCcccc-----------Cccc-ccc---CCc-eEEEEcCCcccccC
Q 040733 325 G-TVYANYAVNECDLLLAAGVRFNERMT-----------SKLE-DFA---TRA-KIVHIDIDSNEIGK 375 (643)
Q Consensus 325 ~-~~~~~~~l~~aDlvL~vG~~~~~~~t-----------~~~~-~~~---~~~-~iI~Id~d~~~i~~ 375 (643)
+ .....+.++++|+||++|+...+... ..+. ... ... |+|.||+.......
T Consensus 199 ~~~~~~~~~~~~ad~il~~G~Np~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~klivIDPr~t~ta~ 266 (829)
T 1tmo_A 199 AQGTSWPLILEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQA 266 (829)
T ss_dssp SCCCCHHHHHHHCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSCCHHHH
T ss_pred CCCCchHhhHhhCCEEEEECCChhhccccccccccchHHHHHHHHHHHhhCCCceEEEECCCCCCcch
Confidence 1 11122347899999999988632111 0111 112 356 99999987776543
No 194
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=27.70 E-value=3.9e+02 Score=25.21 Aligned_cols=91 Identities=12% Similarity=0.129 Sum_probs=52.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCC--------cHHHHHHHhhCCC--eEEec-CChhHHHHH-HHHHHHHhCCcEEE
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGA--------SIEIHQSLTRSNI--RSILP-RHEQGGIFA-AEGYARSSGTPGVC 136 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~--------~~~l~~al~~~~i--~~i~~-~hE~~A~~~-A~Gyar~sg~~gv~ 136 (643)
...++..+++.|.+.|-++|.-+-|.. ...+.+++.+.++ .++.. ......++- +.-+-+...+|-++
T Consensus 122 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 201 (293)
T 2iks_A 122 DQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQAL 201 (293)
T ss_dssp HHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEEEESSSCHHHHHHHHHHHTTTSCCCSEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCccEEEcCCCChhhHHHHHHHHHhcCCCCCEE
Confidence 346888999999999988766554432 2345666766664 33322 222222222 22222222457788
Q ss_pred EEccchhhHHHHHHHHHhhhCCCC
Q 040733 137 LVSSGPGVTNIMTGLMDAYSDSIP 160 (643)
Q Consensus 137 ~~t~GpG~~N~~~gl~~A~~~~vP 160 (643)
++.+..-+..++.++.++-. ++|
T Consensus 202 ~~~~d~~a~g~~~al~~~g~-~vP 224 (293)
T 2iks_A 202 FTTSFALLQGVMDVTLRRDG-KLP 224 (293)
T ss_dssp EESSHHHHHHHHHHHHHHHS-SCC
T ss_pred EECChHHHHHHHHHHHHcCC-CCC
Confidence 88877767777777766532 344
No 195
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=27.10 E-value=61 Score=29.37 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=42.9
Q ss_pred ccccCCCCCCcHHHHHHHHHHHCCCC----EEEEccCCCcHHHH-HHHhh-----C---C-CeEE-------ecCChhHH
Q 040733 61 SSRFAPDKPRKGADIIVEALERQGVT----TVFAYPGGASIEIH-QSLTR-----S---N-IRSI-------LPRHEQGG 119 (643)
Q Consensus 61 ~~~~~~~~~~~~a~~lv~~L~~~GV~----~vFg~PG~~~~~l~-~al~~-----~---~-i~~i-------~~~hE~~A 119 (643)
.+||+..-.-..-+--.+.|+++|++ .++-+||...+|+. +.|.+ + + +=.+ ..++|..+
T Consensus 23 ~arfn~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd~Va 102 (168)
T 1ejb_A 23 HARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLIKGSTMHFEYIS 102 (168)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCSSSHHHHHH
T ss_pred EEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEEEecccccCCchHHHHHH
Confidence 46665432223344456889999986 58999999999998 34443 1 2 1111 22366666
Q ss_pred HHHHHHHHHHh
Q 040733 120 IFAAEGYARSS 130 (643)
Q Consensus 120 ~~~A~Gyar~s 130 (643)
...+.|..+++
T Consensus 103 ~~vs~Gl~~vs 113 (168)
T 1ejb_A 103 DSTTHALMNLQ 113 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 196
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=26.84 E-value=53 Score=30.42 Aligned_cols=101 Identities=14% Similarity=0.115 Sum_probs=65.1
Q ss_pred cccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC--chhhHHHHHHhhcccccccccCC
Q 040733 486 MGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY--LGMNVEYEDRYFEANRANSFLGD 563 (643)
Q Consensus 486 mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~--~g~~~~~q~~~~~~~~~~~~~g~ 563 (643)
-|+-+=-|+--+... ..-|+++|=+.....+..+..+. ++++.+..++|.. ...+++.....+. ...|
T Consensus 79 s~~Dil~al~~a~~~--~~kIavvg~~~~~~~~~~~~~ll--~~~i~~~~~~~~~e~~~~i~~l~~~G~~-----vvVG- 148 (196)
T 2q5c_A 79 TRFDTMRAVYNAKRF--GNELALIAYKHSIVDKHEIEAML--GVKIKEFLFSSEDEITTLISKVKTENIK-----IVVS- 148 (196)
T ss_dssp CHHHHHHHHHHHGGG--CSEEEEEEESSCSSCHHHHHHHH--TCEEEEEEECSGGGHHHHHHHHHHTTCC-----EEEE-
T ss_pred CHhHHHHHHHHHHhh--CCcEEEEeCcchhhHHHHHHHHh--CCceEEEEeCCHHHHHHHHHHHHHCCCe-----EEEC-
Confidence 345555555544433 23688999888888887776554 6788888887763 2222222221111 1111
Q ss_pred CCCCCCCCCCHHHHHhHCCCCEEEeCC-hhHHHHHHHHHHh
Q 040733 564 PLRKSEIFPDMLKFAEACGIPAARVTK-KKDVRAAIQLMLE 603 (643)
Q Consensus 564 p~~~~~~~~d~~~lA~a~G~~~~~V~~-~~eL~~al~~al~ 603 (643)
..--..+|+-+|++++.+++ .+.++.||++|++
T Consensus 149 -------~~~~~~~A~~~Gl~~vli~sg~eSI~~Ai~eA~~ 182 (196)
T 2q5c_A 149 -------GKTVTDEAIKQGLYGETINSGEESLRRAIEEALN 182 (196)
T ss_dssp -------CHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHH
Confidence 12347899999999999998 8889999998874
No 197
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.19 E-value=89 Score=25.02 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=25.0
Q ss_pred CHHHHHhHCCCCEEEeCChhHHHHHHHHHHh
Q 040733 573 DMLKFAEACGIPAARVTKKKDVRAAIQLMLE 603 (643)
Q Consensus 573 d~~~lA~a~G~~~~~V~~~~eL~~al~~al~ 603 (643)
.|+.-.+--|.+...|+++++++..|++.+.
T Consensus 92 efsrevrrrgfevrtvtspddfkkslerlir 122 (134)
T 2l69_A 92 EFSREVRRRGFEVRTVTSPDDFKKSLERLIR 122 (134)
T ss_dssp HHHHHHHHTTCCEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCceEEEecChHHHHHHHHHHHH
Confidence 3555556668889999999999999998775
No 198
>4au1_A Precorrin-8X methylmutase; isomerase, HBA; HET: P8X; 1.45A {Rhodobacter capsulatus}
Probab=26.19 E-value=73 Score=30.35 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHhCC--CcEEEEcCCc--hhhHHHHHHHHHHhCCceeecCCCCC
Q 040733 257 DELALRQTLKLIVESK--NPVLCVGGGC--LNSSEELRKFVGLTGIPVTCTTMGLG 308 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak--rPvIl~G~g~--~~~~~~l~~lae~lg~PV~tt~~gkg 308 (643)
.+.++-++++++.+.+ ||.+++|--+ .++.+.=.+|++..++|.++...-||
T Consensus 157 APTAL~~Lleli~~~~~~rPalVIG~PVGFVgAaESK~~L~~~~~vP~I~~~GrkG 212 (229)
T 4au1_A 157 APTALFHLLNMLEDPACPRPAAIIGCPVGFIGAAESKAALAVANPVPWVIVEGRLG 212 (229)
T ss_dssp CHHHHHHHHHHTTSTTSCCCSEEEECCCCSSSHHHHHHHHHHHCCSSEEEECSSCC
T ss_pred cHHHHHHHHHHHHhcCCCCCCEEEEcCCCccChHHHHHHHHhCCCCCEEEEecCCC
Confidence 5678889999997654 8999999854 35555555666677899988654443
No 199
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=25.96 E-value=18 Score=41.42 Aligned_cols=143 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCC-----CcEEEE-----cCCch-hhHHHHHHHHHHhCCce-eecCCCCCCCCCCCCCcccccCCCC
Q 040733 258 ELALRQTLKLIVESK-----NPVLCV-----GGGCL-NSSEELRKFVGLTGIPV-TCTTMGLGLFPCTDELCLRMVGMFG 325 (643)
Q Consensus 258 ~~~i~~~~~~L~~Ak-----rPvIl~-----G~g~~-~~~~~l~~lae~lg~PV-~tt~~gkg~~~~~hpl~lG~~g~~~ 325 (643)
+++++.+++.|++.+ .-+.+. +.|.. .....+.+|+..+|-.+ ......-+.-....+..+|.....+
T Consensus 87 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~g~~~~~~~~~~~f~~~~G~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (780)
T 1eu1_A 87 DEALDLVARELKRVQESYGPTGTFGGSYGWKSPGRLHNCQVLMRRALNLAGGFVNSSGDYSTAAAQIIMPHVMGTLEVYE 166 (780)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEECCCCCCCCCCSSCCHHHHHHHHHHHHTCCBEEESCSSSTTHHHHHHHHTSSCCTTS
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEecccCCcccccccchhHHHHHHHHhcCCCcCCCCCcccchhhhccCceeccccccC
Q ss_pred cHHHHH-hhhcCCEEEEecCccCccccC------------ccccccCCceEEEEcCCcccccCCC-CCCeeEe--cCHHH
Q 040733 326 TVYANY-AVNECDLLLAAGVRFNERMTS------------KLEDFATRAKIVHIDIDSNEIGKVK-LPDVSIC--ADAKL 389 (643)
Q Consensus 326 ~~~~~~-~l~~aDlvL~vG~~~~~~~t~------------~~~~~~~~~~iI~Id~d~~~i~~~~-~~~~~i~--~D~~~ 389 (643)
....-. .++++|+||++|+...+.... -.......+|+|.||+......... ...+.|. .|+..
T Consensus 167 ~~~~~~~d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~~G~klivIDPr~t~ta~~aad~~l~irPGtD~AL 246 (780)
T 1eu1_A 167 QQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIAINPVRTETADYFGADVVSPRPQTDVAL 246 (780)
T ss_dssp CCSCHHHHHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHHHTCEEEEESSBCCHHHHHHTCEEECCCTTCHHHH
T ss_pred CCCCcHhHHhhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHHCCCeEEEECCCCCCcccccCCEEeeeCCCCHHHH
Q ss_pred HHHHHHHHHhh
Q 040733 390 VFNRMNMILES 400 (643)
Q Consensus 390 ~L~~L~~~l~~ 400 (643)
++..+...++.
T Consensus 247 ~~am~~~ii~e 257 (780)
T 1eu1_A 247 MLGMAHTLYSE 257 (780)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
No 200
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=25.93 E-value=1.9e+02 Score=26.30 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCchh-hHHHHHHHHHHhCCceee
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCLN-SSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~~-~~~~l~~lae~lg~PV~t 302 (643)
+.+.+++++++|.+++ -|+++|.|... ....+..-..++|.++..
T Consensus 33 ~~~~l~~~~~~i~~a~-~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~ 78 (200)
T 1vim_A 33 DLETVGEMIKLIDSAR-SIFVIGAGRSGYIAKAFAMRLMHLGYTVYV 78 (200)
T ss_dssp CHHHHHHHHHHHHHSS-CEEEECSHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHhcCC-EEEEEEecHHHHHHHHHHHHHHhcCCeEEE
Confidence 6778999999999987 57778887652 333343333457888764
No 201
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=25.80 E-value=44 Score=29.99 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=44.4
Q ss_pred ccccCCCCCCcHHHHHHHHHHH-CCCC----EEEEccCCCcHHHH-HHHhhC---C-CeEE-------ecCChhHHHHHH
Q 040733 61 SSRFAPDKPRKGADIIVEALER-QGVT----TVFAYPGGASIEIH-QSLTRS---N-IRSI-------LPRHEQGGIFAA 123 (643)
Q Consensus 61 ~~~~~~~~~~~~a~~lv~~L~~-~GV~----~vFg~PG~~~~~l~-~al~~~---~-i~~i-------~~~hE~~A~~~A 123 (643)
.+||+..-.-..-+--.+.|++ +|++ .+|-+||...+|+. +.|.++ + +=.+ ..++|..+...+
T Consensus 24 ~arfn~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~ 103 (159)
T 1kz1_A 24 HARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVV 103 (159)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEEEEEEEECCSSSHHHHHHHHHH
T ss_pred EeeCcHHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHHHHHHHHH
Confidence 4566442112233445688889 9986 49999999999998 444432 2 2122 233777777777
Q ss_pred HHHHHHh
Q 040733 124 EGYARSS 130 (643)
Q Consensus 124 ~Gyar~s 130 (643)
.|..+++
T Consensus 104 ~Gl~~v~ 110 (159)
T 1kz1_A 104 HGLMRVG 110 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777764
No 202
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=25.66 E-value=95 Score=29.09 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=21.5
Q ss_pred CeEEEEecCccccCCHHHHHHHHHhC---CCeEEEEEeCC
Q 040733 503 AIVVDIDGDGSFIMNLQELAAIKAEN---IPVKILLINNQ 539 (643)
Q Consensus 503 ~~Vv~i~GDGsf~m~~~eL~Ta~~~~---lpv~ivV~NN~ 539 (643)
|-+|++.|.|+ +++.|..+.+.+ ..|..||-|+.
T Consensus 2 riaVl~SG~Gs---~L~aLi~~~~~~~~~~~I~~Vvs~~~ 38 (209)
T 1meo_A 2 RVAVLISGTGS---NLQALIDSTREPNSSAQIDIVISNKA 38 (209)
T ss_dssp EEEEEESSSCT---THHHHHHHHHSTTCSCEEEEEEESST
T ss_pred eEEEEEECCch---HHHHHHHHHhcCCCCcEEEEEEeCCC
Confidence 45788899996 466666554443 45666666654
No 203
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=25.55 E-value=71 Score=30.05 Aligned_cols=33 Identities=36% Similarity=0.416 Sum_probs=20.9
Q ss_pred CeEEEEecCccccCCHHHHHHHHHhC---CCeEEEEEeC
Q 040733 503 AIVVDIDGDGSFIMNLQELAAIKAEN---IPVKILLINN 538 (643)
Q Consensus 503 ~~Vv~i~GDGsf~m~~~eL~Ta~~~~---lpv~ivV~NN 538 (643)
|-+|++.|.|+. ++.|..+.+.+ ..+..||-|+
T Consensus 2 ri~vl~Sg~gsn---l~ali~~~~~~~~~~~i~~Vis~~ 37 (212)
T 1jkx_A 2 NIVVLISGNGSN---LQAIIDACKTNKIKGTVRAVFSNK 37 (212)
T ss_dssp EEEEEESSCCHH---HHHHHHHHHTTSSSSEEEEEEESC
T ss_pred EEEEEEECCcHH---HHHHHHHHHcCCCCceEEEEEeCC
Confidence 457888899974 67766665544 3455566554
No 204
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=25.34 E-value=1.9e+02 Score=27.78 Aligned_cols=86 Identities=9% Similarity=0.009 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCC--------cHHHHHHHhhCCCe--EEecCCh-hHHHHHHHHHHHHh---CCcE
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGA--------SIEIHQSLTRSNIR--SILPRHE-QGGIFAAEGYARSS---GTPG 134 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~--------~~~l~~al~~~~i~--~i~~~hE-~~A~~~A~Gyar~s---g~~g 134 (643)
+..++..+++.|.+.|-++|--+-|.. ...+.+++.+.++. .+..... ..+.-++.-+-+.. .+|-
T Consensus 115 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (295)
T 3hcw_A 115 NILASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQ 194 (295)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCE
T ss_pred cHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCeeEEeccCCHHHHHHHHHHHHhhcccCCCCc
Confidence 346889999999999999876665532 34566677777743 3333222 22322333333332 3788
Q ss_pred EEEEccchhhHHHHHHHHHh
Q 040733 135 VCLVSSGPGVTNIMTGLMDA 154 (643)
Q Consensus 135 v~~~t~GpG~~N~~~gl~~A 154 (643)
++++....-+..++.++.++
T Consensus 195 ai~~~~d~~A~g~~~al~~~ 214 (295)
T 3hcw_A 195 AIISLDAMLHLAILSVLYEL 214 (295)
T ss_dssp EEEESSHHHHHHHHHHHHHT
T ss_pred EEEECChHHHHHHHHHHHHc
Confidence 88887776667777777655
No 205
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=25.22 E-value=2.5e+02 Score=28.63 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=51.8
Q ss_pred HHHHHHHC-CCCEEEEccCCCcHHHHHH-HhhCCC--eEEec---CChhHHHHHHHHHHHH-----hCCcEEEEEccchh
Q 040733 76 IVEALERQ-GVTTVFAYPGGASIEIHQS-LTRSNI--RSILP---RHEQGGIFAAEGYARS-----SGTPGVCLVSSGPG 143 (643)
Q Consensus 76 lv~~L~~~-GV~~vFg~PG~~~~~l~~a-l~~~~i--~~i~~---~hE~~A~~~A~Gyar~-----sg~~gv~~~t~GpG 143 (643)
|++.|++. |++...++.|.+.. +.+. +...+| .+-.. ..+.-+..++....++ .-+|-+++++.++.
T Consensus 44 li~~l~~~~~~~~~~~~tG~h~~-~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~g~~~ 122 (396)
T 3dzc_A 44 LVQQLCQDNRFVAKVCVTGQHRE-MLDQVLELFSITPDFDLNIMEPGQTLNGVTSKILLGMQQVLSSEQPDVVLVHGDTA 122 (396)
T ss_dssp HHHHHHHCTTEEEEEEECCSSSH-HHHHHHHHTTCCCSEECCCCCTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEETTSH
T ss_pred HHHHHHhCCCCcEEEEEecccHH-HHHHHHHhcCCCCceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEECCch
Confidence 67788876 78888999998852 2322 233343 22221 2222233333333333 24899998875543
Q ss_pred hHHHHHHHHHhhhCCCCEEEEeC
Q 040733 144 VTNIMTGLMDAYSDSIPILAITG 166 (643)
Q Consensus 144 ~~N~~~gl~~A~~~~vPvlvItg 166 (643)
..+.+...|+.-++|++++-+
T Consensus 123 --~~~~~~~aa~~~~IPv~h~~a 143 (396)
T 3dzc_A 123 --TTFAASLAAYYQQIPVGHVEA 143 (396)
T ss_dssp --HHHHHHHHHHTTTCCEEEETC
T ss_pred --hHHHHHHHHHHhCCCEEEEEC
Confidence 234555678889999988754
No 206
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=24.95 E-value=30 Score=34.97 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeE
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRS 110 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~ 110 (643)
..-+.+++.|+++|++.+|.+-|+.++.-...|.+.++.+
T Consensus 80 e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~~i~v 119 (319)
T 4a3s_A 80 EGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEHGFPC 119 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhccCCcE
Confidence 4677899999999999999999999998888887755443
No 207
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.70 E-value=3.2e+02 Score=27.09 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCC--cEEEEcCCchhhHHHHHHHHHHhCCceeec-CCCCCCCCCCCCCcccccCCCCcHHHHHhhhc
Q 040733 259 LALRQTLKLIVESKN--PVLCVGGGCLNSSEELRKFVGLTGIPVTCT-TMGLGLFPCTDELCLRMVGMFGTVYANYAVNE 335 (643)
Q Consensus 259 ~~i~~~~~~L~~Akr--PvIl~G~g~~~~~~~l~~lae~lg~PV~tt-~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~ 335 (643)
+.+..+++.|...++ -++++|..- .+.+.+.++|++.|...++. +.| |.|-. ..+ ..+..
T Consensus 60 e~L~~Aa~~I~~i~~~~~ILfVgTk~-~aq~aV~k~A~~tG~~yV~~RWlg-GtLTN-----------~~t----~~f~e 122 (305)
T 3iz6_A 60 EKLQLAARVIVAIENPQDIIVQSARP-YGQRAVLKFAQYTGAHAIAGRHTP-GTFTN-----------QLQ----TSFSE 122 (305)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEECCSH-HHHHHHHHHHHHHTCEEECSCCCT-TTTTT-----------TTT----SCSSC
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCcH-HHHHHHHHHHHHhCCccccCcccC-CcccC-----------ccc----ccccC
Confidence 456677777776543 477787622 46778999999999987753 221 22211 000 12478
Q ss_pred CCEEEEecCccC
Q 040733 336 CDLLLAAGVRFN 347 (643)
Q Consensus 336 aDlvL~vG~~~~ 347 (643)
.|+|+++..+-+
T Consensus 123 PdllvV~Dp~~d 134 (305)
T 3iz6_A 123 PRLLILTDPRTD 134 (305)
T ss_dssp CSEEEESCTTTT
T ss_pred CceeEEeCcccc
Confidence 999999987754
No 208
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=24.65 E-value=1.8e+02 Score=28.02 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCC--cEEEEcCCchhhHHHHHHHHHHhCCceeec-CCCCCCCCCCCCCcccccCCCCcHHHHHhhhc
Q 040733 259 LALRQTLKLIVESKN--PVLCVGGGCLNSSEELRKFVGLTGIPVTCT-TMGLGLFPCTDELCLRMVGMFGTVYANYAVNE 335 (643)
Q Consensus 259 ~~i~~~~~~L~~Akr--PvIl~G~g~~~~~~~l~~lae~lg~PV~tt-~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~ 335 (643)
+.+..+++.|....+ -++++|.. ..+.+.+.++|++.|.+.+.. |.| |.|-. ..+ ..+..
T Consensus 55 ~~L~~A~~~i~~i~~~~~vlfVgTk-~~~q~~V~k~A~~~g~~~v~~rwlg-GtLTN-----------~~t----~~f~~ 117 (252)
T 3u5c_A 55 EKLVLAARIIAAIPNPEDVVAISSR-TFGQRAVLKFAAHTGATPIAGRFTP-GSFTN-----------YIT----RSFKE 117 (252)
T ss_dssp HHHHHHHHHHTTSSSGGGEEEEECS-HHHHHHHHHHHHHSSCEEEESCCCT-TSSSC-----------TTS----TTCCC
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCC-cHHHHHHHHHHHHhCCceecCcccC-CcccC-----------hhh----hhccC
Confidence 456677777766544 37777763 246778999999999987763 222 22211 111 23578
Q ss_pred CCEEEEecCccC
Q 040733 336 CDLLLAAGVRFN 347 (643)
Q Consensus 336 aDlvL~vG~~~~ 347 (643)
.|+|+++..+-+
T Consensus 118 PdllvV~Dp~~d 129 (252)
T 3u5c_A 118 PRLVIVTDPRSD 129 (252)
T ss_dssp CSEEEESCTTTT
T ss_pred CceEEEeCCccc
Confidence 999999987754
No 209
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=24.47 E-value=1.2e+02 Score=26.25 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEe
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSIL 112 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~ 112 (643)
.....+++.+.+.|++.+.-.+|.....+.+.+.+.|++++.
T Consensus 88 ~~~~~vv~~~~~~gi~~i~~~~g~~~~~l~~~a~~~Gi~vvG 129 (144)
T 2d59_A 88 KLTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEAGLIIVA 129 (144)
T ss_dssp HHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHHHcCCEEEc
Confidence 455667788889999999999999999999998888898875
No 210
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=24.05 E-value=1.3e+02 Score=29.81 Aligned_cols=61 Identities=7% Similarity=0.076 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCc
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELC 317 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~ 317 (643)
+++...+.++.|...++...|+|.........+..++++.++|++.....-..+...+|++
T Consensus 65 ~~~~~~~~~~~l~~~~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~ 125 (366)
T 3td9_A 65 EKTEAANAAARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQGRKFV 125 (366)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTTTCSSE
T ss_pred CHHHHHHHHHHHhccCCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccCCCCCE
Confidence 3444444455555556677888876666677788899999999997654333333334443
No 211
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=24.03 E-value=1.3e+02 Score=26.15 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=38.8
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEec
Q 040733 59 DFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILP 113 (643)
Q Consensus 59 ~~~~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~ 113 (643)
+++--+.|. .....+++.+.+.|++.+...+|+....+.+.+.+.|++++..
T Consensus 72 Dlvii~vp~---~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~igp 123 (145)
T 2duw_A 72 DMVDVFRNS---EAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSVVMD 123 (145)
T ss_dssp SEEECCSCS---THHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEEECS
T ss_pred CEEEEEeCH---HHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEEEcC
Confidence 344445442 3455556667779999999999999999999988888998853
No 212
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=23.89 E-value=2.4e+02 Score=27.16 Aligned_cols=72 Identities=22% Similarity=0.186 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhCCC--cEEEEcCCchhhHHHHHHHHHHhCCceeec-CCCCCCCCCCCCCcccccCCCCcHHHHHhhhc
Q 040733 259 LALRQTLKLIVESKN--PVLCVGGGCLNSSEELRKFVGLTGIPVTCT-TMGLGLFPCTDELCLRMVGMFGTVYANYAVNE 335 (643)
Q Consensus 259 ~~i~~~~~~L~~Akr--PvIl~G~g~~~~~~~l~~lae~lg~PV~tt-~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~ 335 (643)
+.+.+|++.+..+++ -++++|..- .+.+.+.++|++.|.+.+.. |.| |.+-. + .+ ..+..
T Consensus 89 ~~L~~A~~~i~~~~~~~~iLfVgTk~-~aq~~V~~~A~~~g~~yv~~RWlg-G~LTN----~-------~~----~~f~~ 151 (253)
T 3bch_A 89 EKLLLAARAIVAIENPADVSVISSRN-TGQRAVLKFAAATGATPIAGRFTP-GTFTN----Q-------IQ----AAFRE 151 (253)
T ss_dssp HHHHHHHHHHHTCSSGGGEEEEECSH-HHHHHHHHHHHHHCCEEEESCCCT-TTTTC----C-------SC----STTCS
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCH-HHHHHHHHHHHHhCCeeecceecC-CcccC----c-------cc----cccCC
Confidence 456777777775443 477777632 46678999999999988764 222 22211 0 01 12468
Q ss_pred CCEEEEecCccC
Q 040733 336 CDLLLAAGVRFN 347 (643)
Q Consensus 336 aDlvL~vG~~~~ 347 (643)
.|+|+++..+-+
T Consensus 152 PdlliV~Dp~~e 163 (253)
T 3bch_A 152 PRLLVVTDPRAD 163 (253)
T ss_dssp CSEEEESCTTTT
T ss_pred CCEEEEECCCcc
Confidence 999999987654
No 213
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=23.70 E-value=1.1e+02 Score=27.83 Aligned_cols=97 Identities=20% Similarity=0.291 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHH--HHHHH------hhCCCeEEecCChhHHHHHHH----HH---------HHH
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIE--IHQSL------TRSNIRSILPRHEQGGIFAAE----GY---------ARS 129 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~--l~~al------~~~~i~~i~~~hE~~A~~~A~----Gy---------ar~ 129 (643)
...+.+++.|.+.+-=++||+-++.... +...| .+.+++.+..... ...+.|. +| ...
T Consensus 33 ~~~~~i~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~ 111 (199)
T 1x92_A 33 QASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTD-SSTITSIANDYSYNEVFSKQIRALG 111 (199)
T ss_dssp HHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCC-HHHHHHHHHHTCGGGTTHHHHHHHC
T ss_pred HHHHHHHHHHHCCCEEEEEcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCC-hhHHHHhhcCccHHHHHHHHHHhCC
Confidence 3556667888887655666664443222 22223 2234555543321 1111111 11 122
Q ss_pred hCCcEEEEEccchh-hHHHHHHHHHhhhCCCCEEEEeCCCc
Q 040733 130 SGTPGVCLVSSGPG-VTNIMTGLMDAYSDSIPILAITGQVS 169 (643)
Q Consensus 130 sg~~gv~~~t~GpG-~~N~~~gl~~A~~~~vPvlvItg~~~ 169 (643)
+.+ -++++-|..| ..+.+..+..|...+.++|.||+...
T Consensus 112 ~~~-DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 151 (199)
T 1x92_A 112 QPG-DVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDG 151 (199)
T ss_dssp CTT-CEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred CCC-CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 222 3444444444 56778889999999999999998543
No 214
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=23.40 E-value=1.6e+02 Score=30.89 Aligned_cols=79 Identities=14% Similarity=0.050 Sum_probs=51.3
Q ss_pred cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC
Q 040733 510 GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT 589 (643)
Q Consensus 510 GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~ 589 (643)
|.|--.-+..|+..+.+.+++...|++++... ..+.-+.|..+|+..+.|+
T Consensus 100 G~g~dvaS~~E~~~~~~~G~~~~~I~~~g~~k-----------------------------~~~ei~~a~~~gv~~~~vd 150 (441)
T 3n2b_A 100 GSGFDIVSVGELERVLAAGGDPSKVVFSGVGK-----------------------------TEAEMKRALQLKIKCFNVE 150 (441)
T ss_dssp TCEEEESSHHHHHHHHHTTCCGGGEEECCTTC-----------------------------CHHHHHHHHHTTCSEEEEC
T ss_pred CCcEEEeCHHHHHHHHHcCCCcccEEEcCCCC-----------------------------CHHHHHHHHHCCCCEEEEc
Confidence 44444567899999999998765556654321 1223344445788778999
Q ss_pred ChhHHHHHHHHHHhCCCcEEEEEEeCCC
Q 040733 590 KKKDVRAAIQLMLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 590 ~~~eL~~al~~al~~~gp~lIeV~v~~~ 617 (643)
+.+|++...+.+.+.+.+.=|-+.++++
T Consensus 151 s~~el~~l~~~a~~~~~~~~V~lRvn~~ 178 (441)
T 3n2b_A 151 SEPELQRLNKVAGELGVKAPISLRINPD 178 (441)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEEBCCC
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 9999988776665555555555555543
No 215
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=23.25 E-value=75 Score=32.09 Aligned_cols=61 Identities=3% Similarity=0.001 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCc
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELC 317 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~ 317 (643)
++....++++.|....+...|+|..+......+..++++.++|+++...+-..+...+|++
T Consensus 56 ~p~~a~~~a~~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~~ 116 (371)
T 4f06_A 56 NPAQSKALAQELIVKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEKSPYI 116 (371)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGGCTTE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhcccCCcc
Confidence 4444444555555567888889987777778888999999999997654433333334443
No 216
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=23.15 E-value=4.5e+02 Score=24.34 Aligned_cols=86 Identities=6% Similarity=-0.137 Sum_probs=49.9
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCC--------cHHHHHHHhhCCC----eEEe-cCChhHHHH-HHHHHHHHhCCcE
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGA--------SIEIHQSLTRSNI----RSIL-PRHEQGGIF-AAEGYARSSGTPG 134 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~--------~~~l~~al~~~~i----~~i~-~~hE~~A~~-~A~Gyar~sg~~g 134 (643)
...++..+++.|.+.|-++|--+-|.. ...+.+++.+.++ .++. .......++ ++.-+-+...+|-
T Consensus 104 ~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (275)
T 3d8u_A 104 HFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLN 183 (275)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCC
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCC
Confidence 446888899999999998876665542 2345567776663 2232 111222222 2222222234577
Q ss_pred EEEEccchhhHHHHHHHHHh
Q 040733 135 VCLVSSGPGVTNIMTGLMDA 154 (643)
Q Consensus 135 v~~~t~GpG~~N~~~gl~~A 154 (643)
++++.+..-+..++.++.+.
T Consensus 184 ai~~~~d~~a~g~~~al~~~ 203 (275)
T 3d8u_A 184 ALVCSHEEIAIGALFECHRR 203 (275)
T ss_dssp EEEESSHHHHHHHHHHHHHT
T ss_pred EEEEcCcHHHHHHHHHHHHc
Confidence 88887777666677666665
No 217
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=23.05 E-value=4.5e+02 Score=24.28 Aligned_cols=87 Identities=9% Similarity=0.007 Sum_probs=55.8
Q ss_pred CCcHHHHHHHHHHHC----CCCEEEEccCCC--------cHHHHHHHhhC-CCeEEecC----ChhHHHHHHHHHHHHhC
Q 040733 69 PRKGADIIVEALERQ----GVTTVFAYPGGA--------SIEIHQSLTRS-NIRSILPR----HEQGGIFAAEGYARSSG 131 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~----GV~~vFg~PG~~--------~~~l~~al~~~-~i~~i~~~----hE~~A~~~A~Gyar~sg 131 (643)
...++..+++.|.+. |-++|--+-|.. ...+.+++.+. ++++.... +...+--++.-+-+...
T Consensus 107 ~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 186 (276)
T 3ksm_A 107 NYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETP 186 (276)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCC
Confidence 456888899999998 999887776653 23456677777 56554322 22233333333333445
Q ss_pred CcEEEEEccchhhHHHHHHHHHhh
Q 040733 132 TPGVCLVSSGPGVTNIMTGLMDAY 155 (643)
Q Consensus 132 ~~gv~~~t~GpG~~N~~~gl~~A~ 155 (643)
+|-++++.+..-+..++.++.++-
T Consensus 187 ~~~ai~~~~d~~a~g~~~al~~~g 210 (276)
T 3ksm_A 187 TIDGLFTPNESTTIGALVAIRQSG 210 (276)
T ss_dssp CCCEEECCSHHHHHHHHHHHHHTT
T ss_pred CceEEEECCchhhhHHHHHHHHcC
Confidence 788888887777777777777664
No 218
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=22.92 E-value=2e+02 Score=32.10 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCch---hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhh
Q 040733 258 ELALRQTLKLIVESKNPVLCVGGGCL---NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVN 334 (643)
Q Consensus 258 ~~~i~~~~~~L~~AkrPvIl~G~g~~---~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~ 334 (643)
...++++.+.|.+.+ .++|+|.--. .+.-.+.++.+++|..+..- +|...+-..| .... ....+..
T Consensus 59 ~~Av~~i~~aI~~~e-kI~I~GH~D~DGi~Saa~L~~~L~~lG~~v~~~------ip~r~~egyg---l~~~-~I~~~~~ 127 (666)
T 2zxr_A 59 REAAALLEEALRQGK-RIRVHGDYDADGLTGTAILVRGLAALGADVHPF------IPHRLEEGYG---VLME-RVPEHLE 127 (666)
T ss_dssp HHHHHHHHHHHHTTC-EEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEC------CC-----------------------
T ss_pred HHHHHHHHHHHHcCC-eEEEEeccCCchHHHHHHHHHHHHHcCCcEEEe------cCCCCCcccc---CCHH-HHHhhcc
Confidence 456777778887655 5667776422 35556888899999886542 2322221112 1111 1223335
Q ss_pred cCCEEEEecCccCccccCccccc-cCCceEEEEcCCc
Q 040733 335 ECDLLLAAGVRFNERMTSKLEDF-ATRAKIVHIDIDS 370 (643)
Q Consensus 335 ~aDlvL~vG~~~~~~~t~~~~~~-~~~~~iI~Id~d~ 370 (643)
+.|+||++.+....+.. .... ....++|.+|.+.
T Consensus 128 ~~~LIItVD~G~~s~~~--i~~a~~~g~~VIViDHH~ 162 (666)
T 2zxr_A 128 ASDLFLTVDCGITNHAE--LRELLENGVEVIVTDHHT 162 (666)
T ss_dssp -CCEEEESCCC----------------CEEEEECCCC
T ss_pred CCCEEEEEcCCchhhhh--HHHHHhCCCCEEEECCcC
Confidence 78999999887543322 1111 1245688887654
No 219
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=22.75 E-value=1.8e+02 Score=26.70 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=25.3
Q ss_pred EEEEccchh-hHHHHHHHHHhhhCCCCEEEEeCCCc
Q 040733 135 VCLVSSGPG-VTNIMTGLMDAYSDSIPILAITGQVS 169 (643)
Q Consensus 135 v~~~t~GpG-~~N~~~gl~~A~~~~vPvlvItg~~~ 169 (643)
++++-|-.| ..+.+..+..|...+.++|.||+...
T Consensus 134 vvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~ 169 (212)
T 2i2w_A 134 VLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDG 169 (212)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 333333444 46678888899999999999998643
No 220
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=22.55 E-value=51 Score=31.97 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCch
Q 040733 258 ELALRQTLKLIVESKNPVLCVGGGCL 283 (643)
Q Consensus 258 ~~~i~~~~~~L~~AkrPvIl~G~g~~ 283 (643)
.+.+++++++|.++++.+|+.|.|..
T Consensus 2 ~~~i~~l~~~l~~a~~ivv~tGAGiS 27 (253)
T 1ma3_A 2 EDEIRKAAEILAKSKHAVVFTGAGIS 27 (253)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGS
T ss_pred hHHHHHHHHHHHhCCcEEEEEchhhh
Confidence 35688999999999999999999987
No 221
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=22.44 E-value=34 Score=34.00 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=22.0
Q ss_pred CCeEEEEecCccccCCHHHHHHHHHhC-C--CeEEEEEeCC
Q 040733 502 GAIVVDIDGDGSFIMNLQELAAIKAEN-I--PVKILLINNQ 539 (643)
Q Consensus 502 ~~~Vv~i~GDGsf~m~~~eL~Ta~~~~-l--pv~ivV~NN~ 539 (643)
-|-+|++.|-|+ +++.|..+.+.+ + .+..||-|+.
T Consensus 89 ~ri~vl~Sg~g~---nl~~ll~~~~~g~l~~~i~~Visn~~ 126 (287)
T 3nrb_A 89 KKVVIMVSKFDH---CLGDLLYRHRLGELDMEVVGIISNHP 126 (287)
T ss_dssp CEEEEEECSCCH---HHHHHHHHHHHTSSCCEEEEEEESSC
T ss_pred cEEEEEEeCCCc---CHHHHHHHHHCCCCCeEEEEEEeCCh
Confidence 355677888874 677776665544 4 4666666654
No 222
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=22.42 E-value=1.5e+02 Score=31.22 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=48.9
Q ss_pred cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC
Q 040733 510 GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT 589 (643)
Q Consensus 510 GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~ 589 (643)
|+|--.-+..|+..+.+.+++...|++++... ..+.-+.|..+|+..+.|+
T Consensus 97 G~g~dvaS~~E~~~~~~~G~~~~~I~~~g~~k-----------------------------~~~ei~~a~~~gv~~~~vd 147 (443)
T 3vab_A 97 GAGADTVSQGEIRRALAAGIPANRIVFSGVGK-----------------------------TPREMDFALEAGIYCFNVE 147 (443)
T ss_dssp TCEEEESSHHHHHHHHHTTCCGGGEEEECTTC-----------------------------CHHHHHHHHHHTCSEEEEC
T ss_pred CCcEEEeCHHHHHHHHHcCCChhhEEEcCCCC-----------------------------CHHHHHHHHHCCCCEEEEC
Confidence 45444567899999999998765455554321 1122333445688778999
Q ss_pred ChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 590 KKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 590 ~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
+.+|++...+.+.+.+++.=|-+.++
T Consensus 148 s~~el~~l~~~a~~~~~~~~V~lRVn 173 (443)
T 3vab_A 148 SEPELEILSARAVAAGKVAPVSLRIN 173 (443)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 99999887766655555444444444
No 223
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=22.30 E-value=78 Score=26.06 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=30.3
Q ss_pred CCHHHHHhHCCCCEEE-eCChhHHHHHHHHHHhCCCcEEE
Q 040733 572 PDMLKFAEACGIPAAR-VTKKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 572 ~d~~~lA~a~G~~~~~-V~~~~eL~~al~~al~~~gp~lI 610 (643)
.|..--.+..|+..+. +++.+|++++++++++.+.-.+|
T Consensus 18 ~Dtv~GFrLaGi~~~~~~~~~ee~~~~~~~l~~~~digII 57 (102)
T 2i4r_A 18 PDFTIGFMLAGISDIYEVTSDEEIVKAVEDVLKRDDVGVV 57 (102)
T ss_dssp HHHHHHHHHTTCCCEEECCSHHHHHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHcCCCcccCCCCHHHHHHHHHHHhhCCCeEEE
Confidence 4666667788998888 99999999999998876544444
No 224
>3e7d_A COBH, precorrin-8X methylmutase; ssgcid, decode, braba00006A, structural genomics, seattle ST genomics center for infectious disease; 1.80A {Brucella abortus} SCOP: c.23.17.1
Probab=21.93 E-value=1.3e+02 Score=28.20 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhCC-CcEEEEcCCch--hhHHHHHHHHH-HhCCceeecCCCCC
Q 040733 257 DELALRQTLKLIVESK-NPVLCVGGGCL--NSSEELRKFVG-LTGIPVTCTTMGLG 308 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak-rPvIl~G~g~~--~~~~~l~~lae-~lg~PV~tt~~gkg 308 (643)
.+.++-++++++.+.+ ||.+++|--+- ++.+.=.+|.+ ..++|.++...-||
T Consensus 140 APTAL~~Lleli~~g~~~PalVIG~PVGFV~aaESKe~L~~~~~~vP~I~~~GrkG 195 (212)
T 3e7d_A 140 APTALFRLFELLDAGAPKPALIIGMPVGFVGAAESKDELAANSRGVPYVIVRGRRG 195 (212)
T ss_dssp CHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEEEECSSCC
T ss_pred cHHHHHHHHHHHHcCCCCcceEEEeCCCccChHHHHHHHHhcCCCCCEEEEecCCC
Confidence 6778999999999876 99999998543 55444444555 37999988655443
No 225
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.90 E-value=2.5e+02 Score=27.75 Aligned_cols=73 Identities=19% Similarity=0.123 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCC--cEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcC
Q 040733 259 LALRQTLKLIVESKN--PVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNEC 336 (643)
Q Consensus 259 ~~i~~~~~~L~~Akr--PvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~a 336 (643)
+.+.++++.|...++ -++++|.. ..+.+.+.++|++.|.+.+..- ..-|++--..+ ..+...
T Consensus 56 ~~L~~A~~~i~~i~~~~~ILfVgTk-~~aq~~V~k~A~~~g~~yv~~R-----------WlgG~LTN~~t----~~f~~P 119 (295)
T 2zkq_b 56 EKLLLAARAIVAIENPADVSVISSR-NTGQRAVLKFAAATGATPIAGR-----------FTPGTFTNQIQ----AAFREP 119 (295)
T ss_dssp HHHHHHHHHHHHSSCGGGEEEEECS-HHHHHHHHHHHHHHCCEEEESS-----------CCCC-CCCTTC----SSCCCC
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCc-HHHHHHHHHHHHHhCCceecce-----------EecccccCccc----ccccCC
Confidence 456777777776543 47777762 2466789999999999887631 11122210001 124689
Q ss_pred CEEEEecCccC
Q 040733 337 DLLLAAGVRFN 347 (643)
Q Consensus 337 DlvL~vG~~~~ 347 (643)
|+|+++..+-+
T Consensus 120 dlliV~Dp~~e 130 (295)
T 2zkq_b 120 RLLVVTDPRAD 130 (295)
T ss_dssp SEEEESCTTTT
T ss_pred CeEEEeCCCcc
Confidence 99999987654
No 226
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=21.54 E-value=2.6e+02 Score=24.67 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=57.7
Q ss_pred cEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCc
Q 040733 274 PVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSK 353 (643)
Q Consensus 274 PvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~ 353 (643)
-++++|.+.....+.+.+++++++ .|. + ..|.........++..+|++|.-- ....+-..-
T Consensus 72 ~l~i~G~~~~~~~~~l~~~~~~~~-~v~---------------~--~~g~~~~~~~~~~~~~ad~~l~ps-~~e~~~~~~ 132 (200)
T 2bfw_A 72 RFIIIGKGDPELEGWARSLEEKHG-NVK---------------V--ITEMLSREFVRELYGSVDFVIIPS-YFEPFGLVA 132 (200)
T ss_dssp EEEEECCBCHHHHHHHHHHHHHCT-TEE---------------E--ECSCCCHHHHHHHHTTCSEEEECC-SCCSSCHHH
T ss_pred EEEEECCCChHHHHHHHHHHHhcC-CEE---------------E--EeccCCHHHHHHHHHHCCEEEECC-CCCCccHHH
Confidence 477888865445677888888876 321 1 012233345667889999998743 221111112
Q ss_pred cccccCCceEEEEcCCcc-cccCCCCCCeeEe-cCHHHHHHHHHHHHh
Q 040733 354 LEDFATRAKIVHIDIDSN-EIGKVKLPDVSIC-ADAKLVFNRMNMILE 399 (643)
Q Consensus 354 ~~~~~~~~~iI~Id~d~~-~i~~~~~~~~~i~-~D~~~~L~~L~~~l~ 399 (643)
++.......+|.-+.... ++- +....+.+. .|...+.+.|...+.
T Consensus 133 ~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 133 LEAMCLGAIPIASAVGGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp HHHHHTTCEEEEESCHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEeCCCChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 334444556666554321 111 222233332 488888888776655
No 227
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=21.05 E-value=2e+02 Score=29.54 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=48.6
Q ss_pred HHHHHHHHC--CCCEEEEccCCCcHHHHHH-HhhCCC--eE-Eec--CChhHHHHHHHHHHHH-----hCCcEEEEEccc
Q 040733 75 IIVEALERQ--GVTTVFAYPGGASIEIHQS-LTRSNI--RS-ILP--RHEQGGIFAAEGYARS-----SGTPGVCLVSSG 141 (643)
Q Consensus 75 ~lv~~L~~~--GV~~vFg~PG~~~~~l~~a-l~~~~i--~~-i~~--~hE~~A~~~A~Gyar~-----sg~~gv~~~t~G 141 (643)
-|++.|++. |++...++.|.+. .+.+. +..-+| .+ +.. ..+.-+..++....+. .-+|-+++++.+
T Consensus 45 ~li~~l~~~~~~~~~~~~~tG~h~-~m~~~~~~~~~i~~~~~l~v~~~~~~~~~~~~~~~~~l~~~l~~~kPD~Vi~~gd 123 (403)
T 3ot5_A 45 PLVLALEKEPETFESTVVITAQHR-EMLDQVLEIFDIKPDIDLDIMKKGQTLAEITSRVMNGINEVIAAENPDIVLVHGD 123 (403)
T ss_dssp HHHHHHHTCTTTEEEEEEECC------CHHHHHHTTCCCSEECCCCC-CCCHHHHHHHHHHHHHHHHHHHCCSEEEEETT
T ss_pred HHHHHHHhCCCCCcEEEEEecCcH-HHHHHHHHhcCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 367888887 6888899999762 12222 222333 12 111 2233333334443333 248999988754
Q ss_pred hhhHHHHHHHHHhhhCCCCEEEEeC
Q 040733 142 PGVTNIMTGLMDAYSDSIPILAITG 166 (643)
Q Consensus 142 pG~~N~~~gl~~A~~~~vPvlvItg 166 (643)
+.. .+.+...|+.-++|++++-+
T Consensus 124 ~~~--~l~~~laA~~~~IPv~h~~a 146 (403)
T 3ot5_A 124 TTT--SFAAGLATFYQQKMLGHVEA 146 (403)
T ss_dssp CHH--HHHHHHHHHHTTCEEEEESC
T ss_pred chh--HHHHHHHHHHhCCCEEEEEC
Confidence 432 24444567889999988764
No 228
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=20.81 E-value=1.4e+02 Score=25.75 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEe
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSIL 112 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~ 112 (643)
.....+++.+.+.|++.+.-.+|+....+.+.+.+.|++++.
T Consensus 80 ~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~~ig 121 (138)
T 1y81_A 80 KVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEYSF 121 (138)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCEEEc
Confidence 445556666778999999999999999999888887888875
No 229
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=20.71 E-value=1.4e+02 Score=24.68 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=0.0
Q ss_pred CcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEE
Q 040733 273 NPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLA 341 (643)
Q Consensus 273 rPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~ 341 (643)
|-+++++.|.. -....+++.|++.|+++-..-.+-+.+.+ .+.+.|+||+
T Consensus 8 kIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~-------------------~~~~~DvvLL 59 (108)
T 3nbm_A 8 KVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYD-------------------IMGVYDLIIL 59 (108)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTT-------------------TGGGCSEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHh-------------------hccCCCEEEE
No 230
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=20.42 E-value=90 Score=29.37 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=20.1
Q ss_pred CeEEEEecCccccCCHHHHHHHHHhC-C--CeEEEEEeC
Q 040733 503 AIVVDIDGDGSFIMNLQELAAIKAEN-I--PVKILLINN 538 (643)
Q Consensus 503 ~~Vv~i~GDGsf~m~~~eL~Ta~~~~-l--pv~ivV~NN 538 (643)
|-+|++.|-|+ +++.|..+.+.+ + .|..||-|+
T Consensus 4 riavl~Sg~Gs---nl~ali~~~~~~~l~~eI~~Visn~ 39 (211)
T 3p9x_A 4 RVAIFASGSGT---NAEAIIQSQKAGQLPCEVALLITDK 39 (211)
T ss_dssp EEEEECCTTCH---HHHHHHHHHHTTCCSSEEEEEEESC
T ss_pred EEEEEEeCCch---HHHHHHHHHHcCCCCcEEEEEEECC
Confidence 44677788774 467776666554 3 455555554
No 231
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=20.42 E-value=1.7e+02 Score=24.17 Aligned_cols=66 Identities=14% Similarity=0.311 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhCCceee-cCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCce
Q 040733 284 NSSEELRKFVGLTGIPVTC-TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAK 362 (643)
Q Consensus 284 ~~~~~l~~lae~lg~PV~t-t~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~ 362 (643)
-+.+.|.+-|+++|+.+-. |-.+.|+- +++. .+-+.+||+||+.+....+ .+.| ..++
T Consensus 20 mAaeaL~~aA~~~G~~ikVEtqGs~G~~---n~Lt------------~~~I~~Ad~VIiA~d~~v~-----~~RF-~GK~ 78 (106)
T 2r4q_A 20 MAADALKEKAKELGVEIKVETNGSSGIK---HKLT------------AQEIEDAPAIIVAADKQVE-----MERF-KGKR 78 (106)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEETTEEE---SCCC------------HHHHHHCSCEEEEESSCCC-----CGGG-TTSB
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCcc---CCCC------------HHHHHhCCEEEEEeCCccC-----HhHc-CCCe
Confidence 3678899999999999844 44333322 2221 3468899999999876432 1223 3457
Q ss_pred EEEEcCCc
Q 040733 363 IVHIDIDS 370 (643)
Q Consensus 363 iI~Id~d~ 370 (643)
++++++..
T Consensus 79 v~~~~v~~ 86 (106)
T 2r4q_A 79 VLQVPVTA 86 (106)
T ss_dssp EEEECHHH
T ss_pred EEEeCHHH
Confidence 77775433
Done!