RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 040733
(643 letters)
>gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase.
Length = 585
Score = 996 bits (2578), Expect = 0.0
Identities = 401/583 (68%), Positives = 484/583 (83%), Gaps = 3/583 (0%)
Query: 59 DFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQ 117
F SRFAPD+PRKGADI+VEALER+GV TVFAYPGGAS+EIHQ+LTRSN IR++L RHEQ
Sbjct: 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQ 61
Query: 118 GGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA 177
G +FAAEGYA++SG GVC+ +SGPG TN++TGL DA DS+P++AITGQV ++++GTDA
Sbjct: 62 GEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGTDA 121
Query: 178 FQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVP 237
FQE P+VEVTR +TKHNYLV+DV+DIPR+I+EAFF+A+SGRPGPVL+DIP D+Q +LAVP
Sbjct: 122 FQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDIQQQLAVP 181
Query: 238 NWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTG 297
NWNQP KLP +S LPK P++ L Q ++LI ESK PV+ VGGGCLNSSEELR+FV LTG
Sbjct: 182 NWNQPMKLPGYLSRLPKPPEKSQLEQIVRLISESKRPVVYVGGGCLNSSEELREFVELTG 241
Query: 298 IPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDF 357
IPV T MGLG FP +DEL L+M+GM GTVYANYAV+ DLLLA GVRF++R+T KLE F
Sbjct: 242 IPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFGVRFDDRVTGKLEAF 301
Query: 358 ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELH 417
A+RA IVHIDID EIGK K P VS+CAD KL +N +LE + DFSAWR EL
Sbjct: 302 ASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLEERKAKRP-DFSAWRAELD 360
Query: 418 EQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQL 477
EQK+K+P SY TFG+ IPPQYAIQ+L+ELTD IISTGVGQHQMWA Q+Y YK R+
Sbjct: 361 EQKEKFPLSYPTFGDAIPPQYAIQVLDELTDG-NAIISTGVGQHQMWAAQWYKYKEPRRW 419
Query: 478 LTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLIN 537
LTS G G+MGFGLPAA+GAA ANP AIVVDIDGDGSFIMN+QELA I EN+PVKI+++N
Sbjct: 420 LTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENLPVKIMVLN 479
Query: 538 NQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAA 597
NQ+LGM V++EDR+++ANRA+++LGDP ++EIFPD LKFAE C IPAARVT+K D+R A
Sbjct: 480 NQHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVTRKSDLREA 539
Query: 598 IQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
IQ ML+TPGPYLLDV+V +QEHV+PMIP +FKD I E DGR
Sbjct: 540 IQKMLDTPGPYLLDVIVPHQEHVLPMIPGGGTFKDIITEGDGR 582
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 616 bits (1590), Expect = 0.0
Identities = 254/564 (45%), Positives = 342/564 (60%), Gaps = 24/564 (4%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARS 129
GA+ +VEALE GV TVF PGG+ + ++ +L S IR IL RHEQG FAA+GYAR+
Sbjct: 2 MTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYARA 61
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY 189
+G PGVCLV+SGPG TN++TGL DAY DS+P+LAITGQV L+GTDAFQE+ V + R
Sbjct: 62 TGKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRP 121
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCI 249
+TK+N+ V +DIP ++ AF IA SGRPGPV++D+P DV A +P LP
Sbjct: 122 ITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILP--- 178
Query: 250 SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGL 307
P P A+R+ +L+ E+K PV+ GGG + SEELR+ G PV T MG
Sbjct: 179 PYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMGK 238
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
G P L L M+GM GT AN A+ E DLLLA G RF++R+T FA A I+HID
Sbjct: 239 GAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTG-YSGFAPPAAIIHID 297
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKY-PFS 426
ID EIGK DV I DAK + L+ + +AW EEL E + Y +
Sbjct: 298 IDPAEIGKNYPVDVPIVGDAKATLEALLEELKPE-------RAAWLEELLEARAAYRDLA 350
Query: 427 YKT-FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGS 485
+ + I PQY I++L EL D + I+ T VGQHQMWA +++ + R R+ LTS G G+
Sbjct: 351 LEELADDGIKPQYVIKVLRELLPD-DAIVVTDVGQHQMWAARYFDFYRPRRFLTSGGLGT 409
Query: 486 MGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNV 545
MGFGLPAA+GA +A P VV I GDG F+MN QEL +PVKI+++NN GM
Sbjct: 410 MGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIVVLNNGGYGMVR 469
Query: 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETP 605
++++ ++ + + LG+ PD +K AEA G RV +++ A++ L +
Sbjct: 470 QWQELFYGGRYSGTDLGN--------PDFVKLAEAYGAKGIRVETPEELEEALEEALASD 521
Query: 606 GPYLLDVMVSYQEHVVPMIPYDKS 629
GP L+DV+V +E V PM+P K+
Sbjct: 522 GPVLIDVVVDPEEAVPPMVPLGKA 545
>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit;
Reviewed.
Length = 548
Score = 609 bits (1573), Expect = 0.0
Identities = 239/561 (42%), Positives = 336/561 (59%), Gaps = 31/561 (5%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARS 129
GA +V AL QGV TVF YPGGA + ++ +L + +L RHEQG AA GYAR+
Sbjct: 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARA 60
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY 189
+G GVC+ +SGPG TN++TGL DA DS+P++AITGQVS L+GTDAFQEI V+ ++
Sbjct: 61 TGKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLA 120
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL-ELAVPNWNQPCKLPSC 248
TKH++LV ++++P I+ EAF IA+SGRPGPVL+DIP D+QL E + +
Sbjct: 121 CTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDIQLAEGELEPHLTTVENEP- 179
Query: 249 ISSLPKEPDELALRQTLKLIVESKNPVLCVGGGC--LNSSEELRKFVGLTGIPVTCTTMG 306
L Q L+ ++K PVL VGGG + LR+F+ TG+P T G
Sbjct: 180 ------AFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKG 233
Query: 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHI 366
LG L M+GM GT AN AV ECDLL+A G RF++R+T KL FA AK++H+
Sbjct: 234 LGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHL 293
Query: 367 DIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFS 426
DID EI K++ V++ D + + L + AWR+ + + ++ +
Sbjct: 294 DIDPAEINKLRQAHVALQGDLNALLPALQQPL---------NIDAWRQHCAQLRAEHAWR 344
Query: 427 YKTFGEEIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFG 484
Y GE I YA +L +L+D +T+++T VGQHQMW Q + R +TSSG G
Sbjct: 345 YDHPGEAI---YAPALLKQLSDRKPADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGLG 401
Query: 485 SMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544
+MGFGLPAA+GA VA P V+ + GDGSF+MN+QEL IK + +PVKI+L++NQ LGM
Sbjct: 402 TMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQRLGMV 461
Query: 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET 604
+++ +F+ + + L D PD + A A GIP +T+K V AA+ +L +
Sbjct: 462 RQWQQLFFDERYSETDLSDN-------PDFVMLASAFGIPGQTITRKDQVEAALDTLLNS 514
Query: 605 PGPYLLDVMVSYQEHVVPMIP 625
GPYLL V + E+V P++P
Sbjct: 515 EGPYLLHVSIDELENVWPLVP 535
>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit,
biosynthetic type. Two groups of proteins form
acetolactate from two molecules of pyruvate. The type of
acetolactate synthase described in this model also
catalyzes the formation of acetohydroxybutyrate from
pyruvate and 2-oxobutyrate, an early step in the
branched chain amino acid biosynthesis; it is therefore
also termed acetohydroxyacid synthase. In bacteria, this
catalytic chain is associated with a smaller regulatory
chain in an alpha2/beta2 heterotetramer. Acetolactate
synthase is a thiamine pyrophosphate enzyme. In this
type, FAD and Mg++ are also found. Several isozymes of
this enzyme are found in E. coli K12, one of which
contains a frameshift in the large subunit gene and is
not expressed [Amino acid biosynthesis, Pyruvate
family].
Length = 558
Score = 601 bits (1552), Expect = 0.0
Identities = 259/570 (45%), Positives = 358/570 (62%), Gaps = 16/570 (2%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARS 129
GA+ I+E+L+ +GV TVF YPGGA + I+ +L S I IL RHEQG AA+GYAR+
Sbjct: 2 SGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARA 61
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY 189
SG GV LV+SGPG TN++TG+ AY DSIP++ TGQV L+G+DAFQE ++ +T
Sbjct: 62 SGKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMP 121
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCI 249
+TKH++ V +DIPRIIKEAF IAT+GRPGPVL+D+P DV + + LP
Sbjct: 122 ITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVTTAEIEYPYPEKVNLPG-- 179
Query: 250 SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGL 307
+ L +++ +LI +K PV+ VGGG + +SEEL++ IPVT T MGL
Sbjct: 180 YRPTVKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTLMGL 239
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
G FP L L M+GM GT AN AV+ECDL++A G RF++R+T L FA AKI+HID
Sbjct: 240 GSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHID 299
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
ID EIGK D+ I DA+ V + L SAW E++++ KK+YP
Sbjct: 300 IDPAEIGKNVRVDIPIVGDARNVLEELLKKLFELK---ERKESAWLEQINKWKKEYPLKM 356
Query: 428 KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMG 487
E I PQ I+ L+ +T D E I++T VGQHQMWA QFY +++ R+ +TS G G+MG
Sbjct: 357 DYTEEGIKPQQVIEELSRVTKD-EAIVTTDVGQHQMWAAQFYPFRKPRRFITSGGLGTMG 415
Query: 488 FGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEY 547
FGLPAA+GA VA P + V+ I GDGSF MNLQEL+ +IPVKIL++NN+YLGM ++
Sbjct: 416 FGLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDIPVKILILNNRYLGMVRQW 475
Query: 548 EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGP 607
++ ++E +++ +G PD +K AEA GI R+ K +++ ++ L + P
Sbjct: 476 QELFYEERYSHTHMGS-------LPDFVKLAEAYGIKGIRIEKPEELDEKLKEALSSNEP 528
Query: 608 YLLDVMVSYQEHVVPMIPYDKSFKDTILED 637
LLDV+V E+V+PM+ + I E
Sbjct: 529 VLLDVVVDKPENVLPMVAPGGGLDEMIGEK 558
>gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 595
Score = 557 bits (1436), Expect = 0.0
Identities = 250/574 (43%), Positives = 358/574 (62%), Gaps = 16/574 (2%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS 130
GA+++V+AL+ QGV +F YPGGA + I+ + + + I+ IL RHEQG AAEGYARS+
Sbjct: 13 GAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARST 72
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G PGV LV+SGPG TN +T L DA DSIP++ ITGQV L+G+DAFQE V +TR
Sbjct: 73 GKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPC 132
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
TKHN+LV DV+D+ R+I EAF +ATSGRPGPV++DIP DVQ A + P K P +S
Sbjct: 133 TKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDVQ--FATGTYTPPQKAPVHVS 190
Query: 251 SLPK-EPDELALRQTLKLIVESKNPVLCVGGGCLNS----SEELRKFVGLTGIPVTCTTM 305
PK + D A+ + ++L+ +K PV+ GGG +NS S LR+ V LTG P+T T M
Sbjct: 191 YQPKVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLM 250
Query: 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVH 365
GLG +P + + L M+GM GT AN A+++CD++L G RF++R+T +L+ F+ +K +H
Sbjct: 251 GLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDRITGRLDAFSPNSKKIH 310
Query: 366 IDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGF-MFDFSAWREELHEQKKKYP 424
IDID + I K DV I D V M + +++G + W ++ + +
Sbjct: 311 IDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNS 370
Query: 425 FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFG 484
+Y + I PQYAIQ L ELT +T I+T VGQHQMWA QF+ ++ + +TS G G
Sbjct: 371 LAYTPSDDVIMPQYAIQRLYELTKGRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLG 430
Query: 485 SMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544
+MG+GLPAA+G +A+P A+V+DI GD S M +QE++ N+PVKI ++NNQY+GM
Sbjct: 431 TMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYNLPVKIFILNNQYMGMV 490
Query: 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET 604
+++ ++S+ +E PD +K AEA G R K D+ AIQ M++
Sbjct: 491 RQWQQLLHGNRLSHSY-------TEAMPDFVKLAEAYGAVGIRCEKPGDLDDAIQEMIDV 543
Query: 605 PGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDD 638
P + D V+ E+ PMIP K+ + +L D+
Sbjct: 544 DKPVIFDCRVANLENCFPMIPSGKAHNEMLLPDE 577
>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 563
Score = 551 bits (1421), Expect = 0.0
Identities = 245/578 (42%), Positives = 343/578 (59%), Gaps = 26/578 (4%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARS 129
G+ ++ EAL+ +GV VF YPGGA + I+ + + N + IL RHEQ + AA+GYAR+
Sbjct: 4 SGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARA 63
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY 189
SG GV +V+SGPG TN +TGL AY DSIP++ I+GQV L+GTDAFQEI V ++R
Sbjct: 64 SGKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRP 123
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCI 249
KHNYLV ++++PRI+KEAF+IA SGRPGPV IDIP DV L + + L +
Sbjct: 124 CVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVTATLGEFEYPKEISLKTYK 183
Query: 250 SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGL 307
+ + +++ + I E+K P+ +GGG + S SEE+R+ V TGIP T M
Sbjct: 184 PTYKGNSRQ--IKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVETLMAR 241
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
G+ D L L M+GM G+ AN A++ECDLL++ G RF++R+T KL +FA AKI+H+D
Sbjct: 242 GVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVD 301
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
ID + I K+ D I D K V M+ E K + WRE L + +P SY
Sbjct: 302 IDPSSISKIVNADYPIVGDLKNVLK--EMLEELKEENPT-TYKEWREILKRYNELHPLSY 358
Query: 428 KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMG 487
+ E + PQ+ I+ + EL D + IIST VGQHQMW QFY + RQL TS G G+MG
Sbjct: 359 EDSDEVLKPQWVIERVGELLGD-DAIISTDVGQHQMWVAQFYPFNYPRQLATSGGLGTMG 417
Query: 488 FGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM---- 543
+GLPAA+GA +A P +V++ GDGS +MN+QEL IPV +++NN +LGM
Sbjct: 418 YGLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVEYKIPVINIILNNNFLGMVRQW 477
Query: 544 -NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML 602
YE+RY E + PD +K AE+ G RVT K++ A++ L
Sbjct: 478 QTFFYEERYSETDL------------STQPDFVKLAESFGGIGFRVTTKEEFDKALKEAL 525
Query: 603 ETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
E+ L+DV + E+V+PM+P + + IL
Sbjct: 526 ESDKVALIDVKIDRFENVLPMVPAGGALYNMILPKKKD 563
>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 561
Score = 550 bits (1420), Expect = 0.0
Identities = 243/569 (42%), Positives = 350/569 (61%), Gaps = 19/569 (3%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
GA I++ LE++GV +F YPGGA I ++ L S++R IL RHEQ AA+GYAR++G
Sbjct: 10 GARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATG 69
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
GVC+ +SGPG TN++TG+ AY DS+PI+A+TGQV + ++G DAFQE + +T +T
Sbjct: 70 KVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPIT 129
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISS 251
KHNYLV D D+PRIIKEAF IA++GRPGPVLID+P DV ++ +L +
Sbjct: 130 KHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDVTTAEIDFDYPDKVELRGYKPT 189
Query: 252 LPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGL 309
P + +++ +LI++++ P++ GGG + N+SEEL + PVT T MG+G
Sbjct: 190 YKGNPQQ--IKRAAELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTTTLMGIGA 247
Query: 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDID 369
P L L M+GM GT YANYA+ E DL++A G RF++R+T KL FA AKI+HIDID
Sbjct: 248 IPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDID 307
Query: 370 SNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKT 429
EI K DV I DAK V + ++ D W +++++ KK+YP YK
Sbjct: 308 PAEISKNVKVDVPIVGDAKQVLKSLIKYVQYC------DRKEWLDKINQWKKEYPLKYKE 361
Query: 430 FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFG 489
+ I PQY I+ + EL D II T VGQHQMWA Q++ YK R +TS G G+MG+G
Sbjct: 362 REDVIKPQYVIEQIYELCPD--AIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYG 419
Query: 490 LPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYED 549
PAA+GA V P V+DI GDGSF MN QELA +IPV + ++NN YLGM ++++
Sbjct: 420 FPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVAILNNGYLGMVRQWQE 479
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYL 609
+++ +++ + D +K AEA G RV K +VR AI+ + + P +
Sbjct: 480 LFYDKRYSHTCIKGS-------VDFVKLAEAYGALGLRVEKPSEVRPAIEEAVASDRPVV 532
Query: 610 LDVMVSYQEHVVPMIPYDKSFKDTILEDD 638
+D +V +E+V PM+P + + + ++
Sbjct: 533 IDFIVECEENVSPMVPAGAAINEILDLEE 561
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit;
Reviewed.
Length = 571
Score = 542 bits (1397), Expect = 0.0
Identities = 244/555 (43%), Positives = 340/555 (61%), Gaps = 17/555 (3%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
GA +++EALE++GV +F YPGGA + ++ +L I IL RHEQG I AAEGYAR SG
Sbjct: 18 GAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARISG 77
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
PGV + +SGPG TN++TGL DA DS+P++ TGQV+ ++G+DAFQE ++ +T +T
Sbjct: 78 KPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVT 137
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISS 251
KHNY V D+PRIIKEAF IAT+GRPGPVLIDIP D+ +E ++ LP +
Sbjct: 138 KHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDMVVEEGEFCYDVQMDLPGYQPN 197
Query: 252 LPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGL 309
EP+ L +R+ ++ + +K PV+ G G L +S+EL + IPV T +GLG
Sbjct: 198 --YEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELTSYAEQQEIPVVHTLLGLGG 255
Query: 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDID 369
FP L L M GM GT AN A+ ECDLL+ G RF++R+T L FA A + HIDID
Sbjct: 256 FPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRVTGNLAYFAKEATVAHIDID 315
Query: 370 SNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKT 429
EIGK ++ I ADAK ++ + + W L K+KYP SYK
Sbjct: 316 PAEIGKNVPTEIPIVADAKQALQV--LLQQEGKKE---NHHEWLSLLKNWKEKYPLSYKR 370
Query: 430 FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFG 489
E I PQ AI++L E+T E I++T VGQHQMWA Q+Y +K + +TS G G+MGFG
Sbjct: 371 NSESIKPQKAIEMLYEITKG-EAIVTTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFG 429
Query: 490 LPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYED 549
LPAA+GA +A P VV I GDG F M LQEL+ IK ++PVK++++NN+ LGM ++++
Sbjct: 430 LPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKVVILNNEALGMVRQWQE 489
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYL 609
++ ++S L PD +K AEA GI R+ + + + +Q +E P +
Sbjct: 490 EFYNQRYSHSLLSCQ-------PDFVKLAEAYGIKGVRIDDELEAKEQLQHAIELQEPVV 542
Query: 610 LDVMVSYQEHVVPMI 624
+D V E V+PM+
Sbjct: 543 IDCRVLQSEKVMPMV 557
>gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 570
Score = 541 bits (1395), Expect = 0.0
Identities = 256/566 (45%), Positives = 351/566 (62%), Gaps = 19/566 (3%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
GA +++ L++ GVTTVF YPGGA + ++ +L S ++ IL RHEQ I AAEGYAR+SG
Sbjct: 17 GAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYARASG 76
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
GV +SGPG TN++TGL DAY DSIP++ ITGQV+ L+G D FQE VV +T +T
Sbjct: 77 KVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVT 136
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISS 251
KHNY V DV+ + RI++EAF+IA SGRPGPVLIDIP DVQ E +N+ ++P
Sbjct: 137 KHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQNEKVTSFYNEVVEIPG--YK 194
Query: 252 LPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGL 309
PD + LR+ K I ++K P+L +GGG ++S SEEL +F IPV T MGLG
Sbjct: 195 PEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLMGLGA 254
Query: 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDID 369
+P D L L M+GM GT AN AV ECDLLLA GVRF++R+T KLE F+ +K VHIDID
Sbjct: 255 YPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDID 314
Query: 370 SNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKT 429
+E K + + D K ++M+L W +++ K++YP SYK
Sbjct: 315 PSEFHKNVAVEYPVVGDVKKA---LHMLLHMSI---HTQTDEWLQKVKTWKEEYPLSYKQ 368
Query: 430 FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFG 489
E+ PQ+ I +++ELT+ E I++T VGQHQMWA FY K R LTS G G+MGFG
Sbjct: 369 KESELKPQHVINLVSELTNG-EAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFG 427
Query: 490 LPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYED 549
PAA+GA +A +V+ I GD SF MN+QEL I NIPVK+ +INN++LGM ++++
Sbjct: 428 FPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVFIINNKFLGMVRQWQE 487
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYL 609
++E + S +G PD +K AEA G+ R T + + + GP +
Sbjct: 488 MFYENRLSESKIGS--------PDFVKVAEAYGVKGLRATNSTEAKQVMLEAFAHEGPVV 539
Query: 610 LDVMVSYQEHVVPMIPYDKSFKDTIL 635
+D V E+V PM+P +K + I+
Sbjct: 540 VDFCVEEGENVFPMVPPNKGNNEMIM 565
>gnl|CDD|236098 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit;
Validated.
Length = 612
Score = 541 bits (1396), Expect = 0.0
Identities = 247/565 (43%), Positives = 324/565 (57%), Gaps = 22/565 (3%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSS 130
GA +V +LE GV VF PGGA + ++ L S +R +L RHEQG AAEGYA+++
Sbjct: 33 GAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQAT 92
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GVC+ +SGPG TN++T + DA DS+P++AITGQV + L+GTDAFQE +V +T +
Sbjct: 93 GRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPI 152
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
TKHN+LV D DDIPR+I EAF IA++GRPGPVL+DIP D +W LP
Sbjct: 153 TKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDALQAQTTFSWPPRMDLPGYRP 212
Query: 251 SLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLG 308
+P +R+ KLI ++ PVL VGGG + +S ELR+ LTGIPV T M G
Sbjct: 213 VT--KPHGKQIREAAKLIAAARRPVLYVGGGVIRAEASAELRELAELTGIPVVTTLMARG 270
Query: 309 LFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDI 368
FP + L M GM GTV A A+ DLL+A G RF++R+T KL+ FA AK++H DI
Sbjct: 271 AFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGARFDDRVTGKLDSFAPDAKVIHADI 330
Query: 369 DSNEIGKVKLPDVSICADAKLVFNRMN-MILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
D EIGK + DV I D K V + + G D +AW L ++ YP Y
Sbjct: 331 DPAEIGKNRHADVPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGY 390
Query: 428 -KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSM 486
+ + PQY I+ L E+ + I GVGQHQMWA QF Y++ R L S G G+M
Sbjct: 391 DEPSDGSLAPQYVIERLGEIA-GPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTM 449
Query: 487 GFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM--- 543
G+ +PAAMGA V P V IDGDG F M QELA E IP+K+ LINN LGM
Sbjct: 450 GYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAIEGIPIKVALINNGNLGMVRQ 509
Query: 544 --NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLM 601
+ YE+RY +N+ L S PD +K AEA G R +++DV A I+
Sbjct: 510 WQTLFYEERY-----SNTDLHT---HSHRIPDFVKLAEAYGCVGLRCEREEDVDAVIEKA 561
Query: 602 LETPG-PYLLDVMVSYQEHVVPMIP 625
P ++D +V V PM+
Sbjct: 562 RAINDRPVVIDFVVGKDAMVWPMVA 586
>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit.
Length = 585
Score = 530 bits (1368), Expect = 0.0
Identities = 246/572 (43%), Positives = 347/572 (60%), Gaps = 28/572 (4%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSL----TRSNIRSILPRHEQGGIFAAEGYA 127
GA ++++L R GV +F YPGGA + I+ L + I+ IL RHEQG AA+GYA
Sbjct: 12 GAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYA 71
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVT 187
RS+G GVC +SGPG TN++TG+ A DS+P+L ITGQV + +GTDAFQE+ + +T
Sbjct: 72 RSTGKVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGIT 131
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLE----LAVPNWNQPC 243
+ KH+Y+V D DI RI+ EAF+IA GRPGPVLIDIP DV LE N
Sbjct: 132 LPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDVGLEKFDYYPPEPGNTII 191
Query: 244 KLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVT 301
K+ C P + Q KLI++S P+L VGGG + ++ +E+ + L IPVT
Sbjct: 192 KILGCRPIYK--PTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEITELAELYKIPVT 249
Query: 302 CTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRA 361
T MG G+F LCL M+GM GT YAN+AV+ECDLL+A G RF++R+T KL++FA A
Sbjct: 250 TTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNA 309
Query: 362 KIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMF----DFSAWREELH 417
+++HIDID EIGK ++P V+I D K V + +LE AWRE ++
Sbjct: 310 QVIHIDIDPAEIGKNRIPQVAIVGDVKKV---LQELLELLKNSPNLLESEQTQAWRERIN 366
Query: 418 EQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQL 477
+K+YP + PQ I +++L D +T VGQHQMWA QF K R+
Sbjct: 367 RWRKEYPLLIPKPSTSLSPQEVINEISQLAPD--AYFTTDVGQHQMWAAQFLKCKP-RKW 423
Query: 478 LTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLIN 537
L+S+G G+MG+GLPAA+GA +A+P +V+ I GD SF MNLQEL I N+P+KI++IN
Sbjct: 424 LSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQYNLPIKIIIIN 483
Query: 538 NQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAA 597
N++ GM +++ ++ ++S E PD +K AEA GI R+ +KD++++
Sbjct: 484 NKWQGMVRQWQQAFYGERYSHS------NMEEGAPDFVKLAEAYGIKGLRIKSRKDLKSS 537
Query: 598 IQLMLETPGPYLLDVMVSYQEHVVPMIPYDKS 629
++ L+ GP L+D V E+ PM+ KS
Sbjct: 538 LKEALDYDGPVLIDCQVIEDENCYPMVAPGKS 569
>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 531 bits (1369), Expect = 0.0
Identities = 242/601 (40%), Positives = 340/601 (56%), Gaps = 42/601 (6%)
Query: 42 TNSTLNIPTSTAPFQQTDFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASI---- 97
T+S I ST Q GA ++++L+R GV +F YPGGA +
Sbjct: 2 TSSPPKIGDSTTVTPQR-----------ATGAYALMDSLKRHGVKHIFGYPGGAILPIYD 50
Query: 98 EIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSD 157
E++++ ++ IL RHEQG AA+GYAR++G GVC +SGPG TN++TG+ A D
Sbjct: 51 ELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIATAQMD 110
Query: 158 SIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217
S+P++ ITGQV + +GTDAFQE + +T + KH+Y+V D D+ RI+ EAF IA+SG
Sbjct: 111 SVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSG 170
Query: 218 RPGPVLIDIPVDVQLELA--VPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPV 275
RPGPVLIDIP DV E VP K P + + + LKLI E++ P+
Sbjct: 171 RPGPVLIDIPKDVGQEEFDYVPVEPGSVKPPG--YRPTVKGNPRQINAALKLIEEAERPL 228
Query: 276 LCVGGGCLNSS--EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAV 333
L VGGG +++ EL++ IPVT T MG G F L + M+GM GT YAN+AV
Sbjct: 229 LYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAV 288
Query: 334 NECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNR 393
ECDLL+A G RF++R+T KL++FA+RAK++HIDID E+GK + PDV I D + V +
Sbjct: 289 TECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVK 348
Query: 394 MNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETI 453
+ AW E ++ K+ YP + EI PQ + + +L D
Sbjct: 349 LLERSLEPTTP--PRTQAWLERINRWKQDYPLVVPPYEGEIYPQEVLLAVRDLAPD--AY 404
Query: 454 ISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS 513
+T VGQHQMWA QF + R+ ++S+G G+MGFG+PAAMG VA P V+ I GD S
Sbjct: 405 YTTDVGQHQMWAAQF-LRNGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDAS 463
Query: 514 FIMNLQELAAIKAENIPVKILLINNQYLGMNVE-----YEDRYFEANRANSFLGDPLRKS 568
F+MN+QEL + I VK ++INN + GM + Y +RY +N
Sbjct: 464 FLMNIQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGERYSASNMEPG--------- 514
Query: 569 EIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDK 628
PD +K AEA G+ ++++ ++ AI L GP L+DV V E+ PM+P K
Sbjct: 515 --MPDFVKLAEAFGVKGMVISERDQLKDAIAEALAHDGPVLIDVHVRRDENCYPMVPPGK 572
Query: 629 S 629
S
Sbjct: 573 S 573
>gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit;
Reviewed.
Length = 586
Score = 520 bits (1340), Expect = e-179
Identities = 238/562 (42%), Positives = 338/562 (60%), Gaps = 18/562 (3%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS 130
KGA+ I++ALE +GV +F YPGGA + + +L S++ IL RHEQ AA+GYAR+S
Sbjct: 2 KGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARAS 61
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GVC+ +SGPG TN++TG+ AY+DS P++A+TGQV KL+G DAFQEI + + +
Sbjct: 62 GKVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPI 121
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ-LELAVPNWNQPCKLPSCI 249
TKHN+ + ++IP I + AF IA +GRPGPV ID+P DVQ EL + + P K+
Sbjct: 122 TKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQEGELDLEKYPIPAKIDLPG 181
Query: 250 SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGL 307
L +++ +LI E++ PV+ GGG + +SEEL + L IPV T MG
Sbjct: 182 YKPTTFGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTLMGK 241
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
G FP L L MVGM GT ANY+V E D+L+A G RF++R T + FA AKI+HID
Sbjct: 242 GAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKIIHID 301
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
ID EIGK DV I DAK V + L K + + S W E + + KK+
Sbjct: 302 IDPAEIGKNVRVDVPIVGDAKNVLRDLLAELMKK---EIKNKSEWLERVKKLKKESIPRM 358
Query: 428 KTFGEEIPPQYAI----QILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
+ I PQ I ++L E+ + TII+T VGQ+QMW F+ R ++S G
Sbjct: 359 DFDDKPIKPQRVIKELMEVLREIDPSKNTIITTDVGQNQMWMAHFFKTSAPRSFISSGGL 418
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G+MGFG PAA+GA VA P A V+ I GDG F+MN QELA I +IPV I + +N+ LGM
Sbjct: 419 GTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAEYDIPVVICIFDNRTLGM 478
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE 603
++++ Y+ ++ LG+ PD +K AE+ G+ A RV K +++ A++ ++
Sbjct: 479 VYQWQNLYYGKRQSEVHLGET-------PDFVKLAESYGVKADRVEKPDEIKEALKEAIK 531
Query: 604 TPGPYLLDVMVSYQEHVVPMIP 625
+ PYLLD+++ E +PM+P
Sbjct: 532 SGEPYLLDIIIDPAE-ALPMVP 552
>gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit;
Validated.
Length = 564
Score = 510 bits (1315), Expect = e-175
Identities = 227/582 (39%), Positives = 324/582 (55%), Gaps = 39/582 (6%)
Query: 53 APFQQTDFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSI 111
A T RF GA++IV LERQG+ V PGGA + ++ +L++S IR I
Sbjct: 2 ASSGTTSTRKRFT------GAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHI 55
Query: 112 LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQK 171
L RHEQG F A+G AR++G P VC+ SGPG TN++T + DA DSIP++ ITGQV
Sbjct: 56 LARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPAS 115
Query: 172 LLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231
++GTDAFQE+ ++ +TKHNYLV D++++P++I +AF IA SGRPGPV IDIP DVQ
Sbjct: 116 MIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDVQ 175
Query: 232 L-ELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEE 288
+ + P DE ++R +I +K PVL +GGG +NS
Sbjct: 176 TAVIELEALPAP-----AEKDAAPAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPAR 230
Query: 289 LRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNE 348
R+ +P T T M LG+ P L L M+GM G NY + E DLL+ G RF++
Sbjct: 231 ARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGARFDD 290
Query: 349 RMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFD 408
R K E F AKI+H+DID E+GK+K P V+I AD V ++ ++E++
Sbjct: 291 RAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVEAQ------P 344
Query: 409 FSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQF 468
+ W + + + ++++P + + I + DD II+T VGQHQMW Q
Sbjct: 345 RAEWHQLVADLQREFPCPIPKADDPLSHYGLINAVAACVDD-NAIITTDVGQHQMWTAQA 403
Query: 469 YMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAEN 528
Y R RQ LTS G G+MGFGLPAA+GAA+ANP V+ GDGS +MN+QE+A
Sbjct: 404 YPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAENQ 463
Query: 529 IPVKILLINNQYLGM-----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGI 583
+ VKI+L+NN+ LG+ ++ Y R F A + ++ A G+
Sbjct: 464 LDVKIILMNNEALGLVHQQQSLFYGQRVFAATYPGK------------INFMQIAAGFGL 511
Query: 584 PAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625
+ + D +AA+Q + PGP L+ V + +E V PM+P
Sbjct: 512 ETCDLNNEADPQAALQEAINRPGPALIHVRIDAEEKVYPMVP 553
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 481 bits (1240), Expect = e-164
Identities = 228/567 (40%), Positives = 337/567 (59%), Gaps = 22/567 (3%)
Query: 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEG 125
+ P+ G+D+++E L GV T+F YPGGA + ++ ++ IR IL RHEQG + AEG
Sbjct: 7 ESPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEG 66
Query: 126 YARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVE 185
YA+S+G GV +V+SGPG TN +TG+ DA SDS+P+L TGQV++ +G DAFQE +V
Sbjct: 67 YAKSTGKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVG 126
Query: 186 VTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP-CK 244
+T +TK+NY + + DIPRII EA IAT+GRPGPV+ID+P DV L P
Sbjct: 127 ITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDVS-ALETDFIYDPEVN 185
Query: 245 LPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGC--LNSSEELRKFVGLTGIPVTC 302
LPS +L EP+++ +++ LK + ++K PV+ GGG ++ EL F IPV
Sbjct: 186 LPSYQPTL--EPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERYQIPVVT 243
Query: 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAK 362
T +G G + L L M GM G+ AN A+ E D ++ G RF++R+T + FA AK
Sbjct: 244 TLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAK 303
Query: 363 IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKK 422
+ HIDID EIGK+ D+ + DAK + M+L V + W E++ + K +
Sbjct: 304 VAHIDIDPAEIGKIIKTDIPVVGDAK---KALQMLLAEPTV--HNNTEKWIEKVTKDKNR 358
Query: 423 YPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSG 482
SY + PQ I+ + ELT+ + I+ T VGQHQMWA Q+Y Y+ RQL+TS G
Sbjct: 359 VR-SYDKKERVVQPQAVIERIGELTNG-DAIVVTDVGQHQMWAAQYYPYQNERQLVTSGG 416
Query: 483 FGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
G+MGFG+PAA+GA +ANP V+ GDG F M QELA + +P+K++++NN LG
Sbjct: 417 LGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPIKVVMLNNHSLG 476
Query: 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML 602
M ++++ ++E + S PD A+A GI + + + ++++
Sbjct: 477 MVRQWQESFYEGRTSESVFDT-------LPDFQLMAQAYGIKHYKFDNPETLAQDLEVIT 529
Query: 603 ETPGPYLLDVMVSYQEHVVPMIPYDKS 629
E P L++V +S +EHV+PM+P KS
Sbjct: 530 EDV-PMLIEVDISRKEHVLPMVPAGKS 555
>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 456 bits (1176), Expect = e-154
Identities = 223/573 (38%), Positives = 334/573 (58%), Gaps = 19/573 (3%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS 130
GA+++V AL +GV ++ YPGGA + I+ +L + + + IL RHEQ A+GYAR++
Sbjct: 6 GAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARAT 65
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GV LV+SGPG TN +TG+ AY DSIP++ ++GQV L+G DAFQE +V ++R +
Sbjct: 66 GKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPI 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
KH+++V +IP IIK+AF+IA SGRPGPV++DIP D+ + P K+
Sbjct: 126 VKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDMTNPAEKFEYEYPKKVKLRSY 185
Query: 251 SLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLG 308
S +R+ +++++ +K PV+ GGG + N+S L + L +PVT T MGLG
Sbjct: 186 SPAVRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVTNTLMGLG 245
Query: 309 LFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDI 368
FP TD L M+GM GT AN A++ D++LA G RF++R+T+ F AKI+HIDI
Sbjct: 246 GFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARFDDRVTNGPAKFCPNAKIIHIDI 305
Query: 369 DSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFD---FSAWREELHEQKKKYP- 424
D I K D+ I + V M IL K +G D +AW +++ E + ++
Sbjct: 306 DPASISKTIKADIPIVGPVESVLTEMLAIL--KEIGEKPDKEALAAWWKQIDEWRGRHGL 363
Query: 425 FSY-KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
F Y K G I PQ ++ L E+T+ + +++ VGQHQM+A Q+Y + + + + S G
Sbjct: 364 FPYDKGDGGIIKPQQVVETLYEVTNG-DAYVTSDVGQHQMFAAQYYKFNKPNRWINSGGL 422
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G+MGFGLPAAMG +A P V + G+GS MN+QEL+ +PVKI+ +NN LGM
Sbjct: 423 GTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGLPVKIINLNNGALGM 482
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI-QLML 602
+++D +E ++S++ E PD +K AEA G R+T KD++ + +
Sbjct: 483 VRQWQDMQYEGRHSHSYM-------ESLPDFVKLAEAYGHVGIRITDLKDLKPKLEEAFA 535
Query: 603 ETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTIL 635
+D+ V EHV PM D S +D L
Sbjct: 536 MKDRLVFIDIYVDRSEHVYPMQIADGSMRDMWL 568
>gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 587
Score = 451 bits (1161), Expect = e-152
Identities = 231/590 (39%), Positives = 338/590 (57%), Gaps = 34/590 (5%)
Query: 61 SSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGG 119
S P GA+I+++AL +GV ++ YPGGA + I+ L + + I+ +L RHEQ
Sbjct: 12 ESLSPPAADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAA 71
Query: 120 IFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQ 179
+ AA+GYAR++G GV LV+SGPGVTN +TG+ AY DSIP++ I+GQV +G DAFQ
Sbjct: 72 VHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQ 131
Query: 180 EIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNW 239
E V +TR + KHN+LV DV D+ +K+AF+IA +GRPGPV++DIP DV +
Sbjct: 132 ECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDVSKTPCEYEY 191
Query: 240 NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTG 297
+ ++ S + + +R+ + L++ +K P + GGG + N+S ELR+ L G
Sbjct: 192 PKSVEMRS--YNPVTKGHSGQIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLADLLG 249
Query: 298 IPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDF 357
PVT T MGLG +P +D+ L M+GM GT AN A+ CD+L+A G RF++R+ F
Sbjct: 250 YPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDRVIGNPAHF 309
Query: 358 ATRA-KIVHIDIDSNEIGK-VKLPDVSICADAKLVFNRM-NMILESKGVGFMFDFSAWRE 414
A+R KI+HIDID + I K VK+ D+ I D K V + + ++ + W +
Sbjct: 310 ASRPRKIIHIDIDPSSISKRVKV-DIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWK 368
Query: 415 ELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRA 474
++ + + Y E I PQY ++ L ELT D + + + VGQHQMWA QFY +
Sbjct: 369 QIEGWRSRDCLKYDRESEIIKPQYVVEKLWELT-DGDAFVCSDVGQHQMWAAQFYRFNEP 427
Query: 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKIL 534
R+ + S G G+MG GLP AMG +A+P VV I G+GS M +QEL+ + PVKI+
Sbjct: 428 RRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQYDTPVKII 487
Query: 535 LINNQYLGM-----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT 589
+NN+YLGM +EY RY ++S++ + PD +K AEA G R+
Sbjct: 488 SLNNRYLGMVRQWQEIEYSKRY-----SHSYM-------DALPDFVKLAEAYGHVGMRIE 535
Query: 590 KKKDV----RAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTIL 635
K DV R A++L T LD E+V PM+ K + +L
Sbjct: 536 KTSDVEPALREALRLKDRT---VFLDFQTDPTENVWPMVQAGKGITEMLL 582
>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 572
Score = 434 bits (1117), Expect = e-145
Identities = 215/561 (38%), Positives = 327/561 (58%), Gaps = 21/561 (3%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARSS 130
GA +IV +L +GV +F YPGG+ ++I+ +L +S I IL RHEQ + A+GYAR++
Sbjct: 6 GASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARAT 65
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GV LV+SGPG TN +TG+ AY DSIP++ ++GQV L+G DAFQE ++ ++R +
Sbjct: 66 GKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPV 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
KH++LV D +DIP IIK+AF+IA++GRPGPV+ID+P D P P + P I
Sbjct: 126 VKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC----LNPAILHPYEYPESIK 181
Query: 251 SLPKEPDELA----LRQTLKLIVESKNPVLCVGGGCLNSS--EELRKFVGLTGIPVTCTT 304
P +++ L+ ++ +K PVL VGGG + S +++ + +PV T
Sbjct: 182 MRSYNPTTSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTL 241
Query: 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIV 364
MGLG FP T + L M+GM G AN A++ DL+ GVRF++R T+ LE + A I+
Sbjct: 242 MGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATIL 301
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRM-NMILESKGVGFMFDFSAWREELHEQKKKY 423
HIDID + I K D+ I A V + M ++ ES ++W E+ + +
Sbjct: 302 HIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRN 361
Query: 424 PFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
+Y E I PQ I+ L +LT+ + +++ VGQHQM+A +Y + + R+ + S G
Sbjct: 362 CLAYDKSSERIKPQQVIETLYKLTNG-DAYVASDVGQHQMFAALYYPFDKPRRWINSGGL 420
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G+MGFGLPAAMG A P VV + GDGS MN+QEL+ +IPVKI+ +NN++LGM
Sbjct: 421 GTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVKIINLNNRFLGM 480
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE 603
+++D ++ ++S++ PD K AEA G R++ ++ + ++ L
Sbjct: 481 VKQWQDMIYQGRHSHSYMDS-------VPDFAKIAEAYGHVGIRISDPDELESGLEKALA 533
Query: 604 TPGPYL-LDVMVSYQEHVVPM 623
+ +D+ V EHV PM
Sbjct: 534 MKDRLVFVDINVDETEHVYPM 554
>gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 429 bits (1104), Expect = e-143
Identities = 212/563 (37%), Positives = 326/563 (57%), Gaps = 23/563 (4%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARSS 130
GA+++V +L QGV VF YPGGA ++I+ +L T I +L RHEQ + A+G AR++
Sbjct: 6 GAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARAT 65
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GV LV+SGPG TN +TG+ AY DSIP++ ++GQV+ L+G DAFQE +V ++R +
Sbjct: 66 GEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPV 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
KH++LV +DIP+++K+AF++A SGRPGPV++D+P D+ P P P +S
Sbjct: 126 VKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI----LNPANKLPYVWPESVS 181
Query: 251 SLPKEPDELA----LRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTT 304
P +++ L+ +V +K PV+ VGGG +N+ ++L++ V +PV +
Sbjct: 182 MRSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSL 241
Query: 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIV 364
MGLG FP T L M+GM GT AN ++ D++ A GVRF++R T+ L + A ++
Sbjct: 242 MGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVL 301
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFD-FSAWREELHEQKKKY 423
HIDID I K D+ I DA+ V +M +L + D W +++ + + +
Sbjct: 302 HIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQ 361
Query: 424 PFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
Y T E+I PQ I+ L LT + + S VGQHQM+A +Y + + R+ + S G
Sbjct: 362 CLKYDTHSEKIKPQAVIETLWRLTKGDAYVTSD-VGQHQMFAALYYPFDKPRRWINSGGL 420
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G+MGFGLPAA+G +A P VV + GDGS MN+QEL+ +PV +L +NN+YLGM
Sbjct: 421 GTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNNRYLGM 480
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE 603
+++D + + S++ + PD ++ AEA G +++ ++ + + LE
Sbjct: 481 VKQWQDMIYSGRHSQSYM-------QSLPDFVRLAEAYGHVGIQISHPDELESKLSEALE 533
Query: 604 TPGPYLL---DVMVSYQEHVVPM 623
L DV V EHV PM
Sbjct: 534 QVRNNRLVFVDVTVDGSEHVYPM 556
>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 427 bits (1098), Expect = e-142
Identities = 217/577 (37%), Positives = 334/577 (57%), Gaps = 21/577 (3%)
Query: 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGY 126
K GA+++V++L +GV VF YPGG+ ++I+ ++ T I +L RHEQ + A+GY
Sbjct: 2 KKLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGY 61
Query: 127 ARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEV 186
ARS+G G LV+SGPG TN +TG+ AY+DS+P++ ++GQV L+GTDAFQE ++ +
Sbjct: 62 ARSTGKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGI 121
Query: 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLP 246
+R + KH+++V + +DIP IK+AF+IA++GRPGPV+IDIP D+ P + P
Sbjct: 122 SRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM----VNPANKFTYEYP 177
Query: 247 SCISSLPKEPD----ELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPV 300
+S P + +++ LK ++ +K PVL VGGG + SE+L +F +PV
Sbjct: 178 EEVSLRSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPV 237
Query: 301 TCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATR 360
T + MGLG +P TD+ L M+GM GT AN A++E DL+L GVRF++R T+ L +
Sbjct: 238 TSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDRTTNNLAKYCPN 297
Query: 361 AKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVG-FMFDFSAWREELHEQ 419
AK++HIDID I K + I AK V +LE + + D +AW ++++E
Sbjct: 298 AKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEW 357
Query: 420 KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLT 479
K K + + I PQ ++ + LT+ + + S VGQHQM+A Y + + R+ +
Sbjct: 358 KAKKCLEFDRTSDVIKPQQVVEAIYRLTNGDAYVASD-VGQHQMFAALHYPFDKPRRWIN 416
Query: 480 SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539
S G G+MGFGLPAA+G A+P A VV + GDGS MN+QEL+ K +IPV I+ +NN+
Sbjct: 417 SGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPVVIVSLNNR 476
Query: 540 YLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQ 599
+LGM +++D + + ++ PD K AEA G ++ ++ +
Sbjct: 477 FLGMVKQWQDLIYSGRHSQVYMNS-------LPDFAKLAEAYGHVGIQIDTPDELEEKLT 529
Query: 600 LMLETPGPYL-LDVMVSYQEHVVPMIPYDKSFKDTIL 635
+ +DV V EHV PM + + IL
Sbjct: 530 QAFSIKDKLVFVDVNVDETEHVYPMQIRGGAMNEMIL 566
>gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit;
Reviewed.
Length = 572
Score = 376 bits (966), Expect = e-123
Identities = 214/576 (37%), Positives = 324/576 (56%), Gaps = 22/576 (3%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIH----QSLTRSNIRSILPRHEQGGIFAAEGYA 127
GA I+V++L+R+GV +F PG ++++I+ + L +R +L RHEQ AA+GYA
Sbjct: 4 GARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYA 63
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVT 187
R+SG PGVC +SGPG TN++TGL+ AY DS P++AITGQV + ++G AFQE + V
Sbjct: 64 RASGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVF 123
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLE-LAVPNWNQPCKLP 246
+TK+ + +D+IP+ IK AF+IAT+GRPGPV+IDIP D+ E + W + L
Sbjct: 124 ENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIFYEKMEEIKWPEK-PLV 182
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304
P D LAL++ ++++ ++ P++ VG G + N++ E+ + L IP+ T
Sbjct: 183 KGYRDFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAELLHIPIVSTF 242
Query: 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNER-MTSKLEDFATRAKI 363
G P L +G +G A+ A E D +L G RF++R TS E TR K
Sbjct: 243 PGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKF 302
Query: 364 VHIDIDSNEIGKVKLPDVSICADAKLVFNRM-NMILESKGVGFMFDFSAWREELHEQKKK 422
+ ++ID + K DV I +AK++ + I E +G D SAW + + E K+
Sbjct: 303 IMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAITE---LGQKRDRSAWLKRVKEYKEY 359
Query: 423 YP-FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSS 481
Y F Y ++ P ++ + + + I++TGVGQHQMWA F+ R LTSS
Sbjct: 360 YSQFYYTEENGKLKPWKIMKTIRQ-ALPRDAIVTTGVGQHQMWAEVFWEVLEPRTFLTSS 418
Query: 482 GFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYL 541
G G+MGFGLPAAMGA +A P +VVD+DGDGSF+M LA E+IPV ++ +N+ L
Sbjct: 419 GMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVDEHIPVISVIFDNRTL 478
Query: 542 GMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLM 601
G+ + +D +F +G S PD +K AEA G VT +D+ +++
Sbjct: 479 GLVRQVQDLFF----GKRIVGVDYGPS---PDFVKLAEAFGALGFNVTTYEDIEKSLKSA 531
Query: 602 LETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILED 637
++ P ++ V V +E +P +P K IL D
Sbjct: 532 IKEDIPAVIRVPVDKEELALPTLPPGGRLKQVILRD 567
>gnl|CDD|183066 PRK11269, PRK11269, glyoxylate carboligase; Provisional.
Length = 591
Score = 314 bits (808), Expect = 3e-99
Identities = 187/563 (33%), Positives = 289/563 (51%), Gaps = 35/563 (6%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSS- 130
D V LE++GVTT F PG A + ++ + IR IL RH +G AEGY R++
Sbjct: 7 VDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATA 66
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GVC+ +SGP T+++TGL A +DSIPIL ITGQ + L + FQ + + + + +
Sbjct: 67 GNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPV 126
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
TK V + +PR+ ++AF + SGRPGPVLID+P DVQ +A ++ P
Sbjct: 127 TKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDVQ--VAEIEFD-----PDTYE 179
Query: 251 SLP---KEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTM 305
LP + + L+++ ++ P++ GGG +N+ S+ L +F LTG+PV T M
Sbjct: 180 PLPVYKPAATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTLM 239
Query: 306 GLGLFPCTDELCLRMVGMFG----TVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRA 361
G G P L M GM G Y N + D +L G R+ R T +E +
Sbjct: 240 GWGAIPDDHPL---MAGMVGLQTSHRYGNATLLASDFVLGIGNRWANRHTGSVEVYTKGR 296
Query: 362 KIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL-ESKGVGFMFDFSAWREELHEQK 420
K VH+DI+ +IG+V PD+ I +DAK + + E K G + D SAW + E+K
Sbjct: 297 KFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERK 356
Query: 421 KKYPFSYKTFGEEIP--PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
+ KT + +P PQ + +N+ + +ST +G Q+ A QF + R +
Sbjct: 357 RTLL--RKTHFDNVPIKPQRVYEEMNKAFGRDTCYVST-IGLSQIAAAQFLHVYKPRHWI 413
Query: 479 TSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
G +G+ +PAA+G A+P VV + GD F ++ELA N+P +L+NN
Sbjct: 414 NCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNLPYIHVLVNN 473
Query: 539 QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFP---DMLKFAEACGIPAARVTKKKDVR 595
YLG+ + R F+ + + + E+ D +K AE G A RV K +D+
Sbjct: 474 AYLGL-IRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVFKPEDIA 532
Query: 596 AAIQ----LMLETPGPYLLDVMV 614
A++ LM E P +++V++
Sbjct: 533 PALEQAKALMAEFRVPVVVEVIL 555
>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed.
Length = 547
Score = 302 bits (775), Expect = 7e-95
Identities = 172/565 (30%), Positives = 278/565 (49%), Gaps = 52/565 (9%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS 130
K AD+ V+ LE +GV +F PG ++++ ++L S+I+ IL RHEQG F A Y R +
Sbjct: 2 KAADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLT 61
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GVCL + GPG TN++TG+ A +P++AITGQ K +FQ + VV + +
Sbjct: 62 GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPL 121
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLEL--AVPNWNQPCKLPSC 248
TK ++ D+IP +++EAF +A RPG V +++P D+ E P LP
Sbjct: 122 TKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIAAEETDGKP-------LPRS 174
Query: 249 ISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMG 306
S P A+ + + I +KNP++ +G G +S+ L +FV TGIP T MG
Sbjct: 175 YSRRP-YASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMG 233
Query: 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNE----RMTSKLEDFATRAK 362
G+ P T L L G+ Y + A+ DL++ G E M + K
Sbjct: 234 KGVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMNPNGD-----KK 288
Query: 363 IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAW---REELHEQ 419
++HI+ E+ V P V + D + N + + E +DF + RE +
Sbjct: 289 VIHINFLPAEVDPVYFPQVEVVGD---IANSLWQLKERLADQPHWDFPRFLKIREAIEAH 345
Query: 420 KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLT 479
++ F + PQ + L ++ D++ I+ G +++W + Y L
Sbjct: 346 LEEGADD-DRF--PMKPQRIVADLRKVMPDDD-IVILDNGAYKIWFARNYRAYEPNTCLL 401
Query: 480 SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQEL-AAIKAENIPVKILLIN- 537
+ +MG GLP+A+ A + +P V+ + GDG F+MN QEL A++ +P+ +L++N
Sbjct: 402 DNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVR-LGLPLVVLILND 460
Query: 538 NQYLGMNVEY--EDRYFEANRANSFL--GDPLRKSEIFPDMLKFAEACGIPAARVTKKKD 593
N Y GM + + E+ FE + L G+ PD +K+AE+ G RV D
Sbjct: 461 NAY-GM-IRWKQENMGFE----DFGLDFGN--------PDFVKYAESYGAKGYRVESADD 506
Query: 594 VRAAIQLMLETPGPYLLDVMVSYQE 618
+ ++ L PG +++D V Y E
Sbjct: 507 LLPTLEEALAQPGVHVIDCPVDYSE 531
>gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase. Glyoxylate
carboligase, also called tartronate-semialdehyde
synthase, releases CO2 while synthesizing a single
molecule of tartronate semialdehyde from two molecules
of glyoxylate. It is a thiamine pyrophosphate-dependent
enzyme, closely related in sequence to the large subunit
of acetolactate synthase. In the D-glycerate pathway,
part of allantoin degradation in the Enterobacteriaceae,
tartronate semialdehyde is converted to D-glycerate and
then 3-phosphoglycerate, a product of glycolysis and
entry point in the general metabolism.
Length = 588
Score = 291 bits (745), Expect = 4e-90
Identities = 182/561 (32%), Positives = 294/561 (52%), Gaps = 27/561 (4%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARS 129
+ D V LE++G+TT F PG A + +L IR IL RH +G AEGY R+
Sbjct: 4 RAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRA 63
Query: 130 -SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR 188
+G GVC+ +SGP T+++TGL A +DSIPIL ITGQ + L + FQ + + + +
Sbjct: 64 TAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAK 123
Query: 189 YMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL-ELAV-PNWNQPCKLP 246
++K V + +PR++++AF + SGRPGPVLID+P DVQ+ E+ P+ +P LP
Sbjct: 124 PVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDTYEP--LP 181
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLN--SSEELRKFVGLTGIPVTCTT 304
+ + E A ++++ ++ P++ GGG +N +++ L++F LTG+PV T
Sbjct: 182 VYKPAATRAQIEKA----VEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTL 237
Query: 305 MGLGLFPCTDELCLRMVGMFGT-VYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKI 363
MG G P EL MVG+ + Y N + E D + G R+ R T ++ + K
Sbjct: 238 MGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKF 297
Query: 364 VHIDIDSNEIGKVKLPDVSICADAKLVFNRM-NMILESKGVGFMFDFSAWREELHEQKKK 422
VH+DI+ +IG+V PD+ I +DAK + + E K G + D S W + ++K+
Sbjct: 298 VHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRT 357
Query: 423 YPFSYKTFGEEIP--PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTS 480
KT + +P PQ + +N+ + ++T +G Q+ Q + R +
Sbjct: 358 --LLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTT-IGLSQIAGAQMLHVYKPRHWINC 414
Query: 481 SGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540
G +G+ +PAA+G A+P VV + GD F ++ELA NIP +L+NN Y
Sbjct: 415 GQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPYIHVLVNNAY 474
Query: 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFP---DMLKFAEACGIPAARVTKKKDVRAA 597
LG+ + R F+ + + + SE+ D +K AE G A RV K +++ A
Sbjct: 475 LGL-IRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEEIAPA 533
Query: 598 IQ----LMLETPGPYLLDVMV 614
+ LM E P +++V++
Sbjct: 534 FEQAKALMAEHRVPVVVEVIL 554
>gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family,
Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
module; composed of proteins similar to the large
catalytic subunit of AHAS. AHAS catalyzes the
condensation of two molecules of pyruvate to give the
acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the
precursor of the branched chain amino acids, valine and
leucine. AHAS also catalyzes the condensation of
pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In
addition to requiring TPP and a divalent metal ion as
cofactors, AHAS requires FAD.
Length = 186
Score = 273 bits (702), Expect = 7e-89
Identities = 91/192 (47%), Positives = 129/192 (67%), Gaps = 8/192 (4%)
Query: 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAA 493
I PQ I+ L+ELT + I++T VGQHQMWA Q+Y +K+ R LTS G G+MGFGLPAA
Sbjct: 1 IKPQEVIKELSELTPGD-AIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAA 59
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553
+GA VA P V+ IDGDGSF MN+QELA N+PVKI+++NN LGM ++++ ++E
Sbjct: 60 IGAKVARPDKTVICIDGDGSFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYE 119
Query: 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVM 613
+++ + PD +K AEA GI RV K +++ AA++ L + GP LLDV+
Sbjct: 120 GRYSHT-------TLDSNPDFVKLAEAYGIKGLRVEKPEELEAALKEALASDGPVLLDVL 172
Query: 614 VSYQEHVVPMIP 625
V +E+V+PM+P
Sbjct: 173 VDPEENVLPMVP 184
>gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function
prediction only].
Length = 592
Score = 282 bits (722), Expect = 1e-86
Identities = 183/561 (32%), Positives = 294/561 (52%), Gaps = 27/561 (4%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARS 129
+ D V LE++G+TT F PG A + +L IR IL RH +G AEGY R+
Sbjct: 5 RAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRA 64
Query: 130 -SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR 188
+G GVC+ +SGP T+++TGL A +DSIPIL ITGQ + L + FQ + + + +
Sbjct: 65 TAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAK 124
Query: 189 YMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL-ELAV-PNWNQPCKLP 246
++K V + +PR++++AF + SGRPGPVLID+P DVQ+ E+ P+ +P LP
Sbjct: 125 PVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDMYEP--LP 182
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLN--SSEELRKFVGLTGIPVTCTT 304
+ + E A L ++++++ P++ GGG +N ++ L++F LTG+PV T
Sbjct: 183 VYKPAATRVQAEKA----LAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPVIPTL 238
Query: 305 MGLGLFPCTDELCLRMVGMFGT-VYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKI 363
MG G P L MVG+ + Y N + D++ G R+ R T +E + K
Sbjct: 239 MGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRHTGSVEVYTEGRKF 298
Query: 364 VHIDIDSNEIGKVKLPDVSICADAKLVFNR-MNMILESKGVGFMFDFSAWREELHEQKKK 422
+H+DI+ +IG+V PD+ I +DAK +++ E K G + AW + Q++K
Sbjct: 299 IHVDIEPTQIGRVFCPDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADC--QQRK 356
Query: 423 YPFSYKTFGEEIP--PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTS 480
KT + +P PQ + +N+ + ++T +G Q+ A QF + R +
Sbjct: 357 RTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTT-IGLSQIAAAQFLHVFKPRHWINC 415
Query: 481 SGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540
G +G+ +PAA+G A+P VV I GD F ++ELA IP +L+NN Y
Sbjct: 416 GQAGPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKIPYIHVLVNNAY 475
Query: 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFP---DMLKFAEACGIPAARVTKKKDVRAA 597
LG+ + R F+ + + + SE+ D +K AE G A RV K +D+ A
Sbjct: 476 LGL-IRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPA 534
Query: 598 IQ----LMLETPGPYLLDVMV 614
+ LM + P +++V++
Sbjct: 535 FEQAKALMAQHRVPVVVEVIL 555
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 271 bits (696), Expect = 2e-83
Identities = 183/572 (31%), Positives = 254/572 (44%), Gaps = 66/572 (11%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSL--TRSNIRSILPRHEQGGIFAAEGYARS 129
G + IV L GV TVF PG + +L IR I RHEQ + A GYARS
Sbjct: 6 GGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARS 65
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQ--EIP-VVEV 186
+G PGVC V GPGV N L+ AY + P+L +TGQ+ L+G E+P +
Sbjct: 66 TGRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLAT 125
Query: 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLP 246
R TK + + P ++ EAF SGRP PV +++P DV P P P
Sbjct: 126 LRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDV-FGQRAPVAAAPPLRP 184
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMG 306
+ P PD A+ LI +KNP++ VGGG + EE+R+ + PV G
Sbjct: 185 ----APPPAPDPDAIAAAAALIAAAKNPMIFVGGGAAGAGEEIRELAEMLQAPVVAFRSG 240
Query: 307 LGLFPCTDELCLRMVGMFGTVYANYAV-NECDLLLAAGVRFNERMTSKLEDFATRAKIVH 365
G+ L L A Y + + D+++ G R E T + K++
Sbjct: 241 RGIVSDRHPLGLNFA-------AAYELWPQTDVVIGIGSRL-ELPTFRWPWRPDGLKVIR 292
Query: 366 IDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF 425
IDID E+ ++K PDV+I ADAK + L G + R EL E K
Sbjct: 293 IDIDPTEMRRLK-PDVAIVADAKAGTAALLDALSKAGS----KRPSRRAELRELKA---- 343
Query: 426 SYKTFGE--EIPPQ--YAIQILNELTDD----EETIISTGVGQHQMWA-IQFYMYKRARQ 476
+ PQ Y I L DD +E + VG + F +Y R
Sbjct: 344 --AARQRIQAVQPQASYLRAIREALPDDGIFVDE---LSQVG---FASWFAFPVY-APRT 394
Query: 477 LLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536
+T G++G+G P A+GA VANP VV I GDG F+ +QELA NI V ++
Sbjct: 395 FVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTVVF 454
Query: 537 NNQYLGMNV------EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK 590
NN G NV + R ++ N PD +K AE+ G+ A RV
Sbjct: 455 NNNAYG-NVRRDQKRRFGGRVVASDLVN-------------PDFVKLAESFGVAAFRVDS 500
Query: 591 KKDVRAAIQLMLETPGPYLLDVMVSYQEHVVP 622
+++RAA++ L GP L++V V P
Sbjct: 501 PEELRAALEAALAHGGPVLIEVPVPRGSEASP 532
>gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.
Length = 557
Score = 264 bits (677), Expect = 2e-80
Identities = 169/573 (29%), Positives = 262/573 (45%), Gaps = 69/573 (12%)
Query: 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYA 127
R G I+V+AL GV VF PG + + + +L ++IR I+ R E G AE Y
Sbjct: 7 ARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYG 66
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVT 187
+ +G PG+C V+ GPG TN G+ A+ DS P++ GQV++ +AFQEI +
Sbjct: 67 KLTGRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMF 126
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPS 247
M K + D IP ++ AF +ATSGRPGPV++ +P DV E A P +
Sbjct: 127 GPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLSETAEVPDAPPYRRV- 185
Query: 248 CISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTM 305
++ P D L + L ++ P++ +GG +LR F G+PV C
Sbjct: 186 --AAAPGAADLARLAELLA---RAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFR 240
Query: 306 GLGLFPCTDELCLRMVGMFGTVYANYA--------------VNECDLLLAAGVRFNERMT 351
LF NYA + E DL+LA G R E +T
Sbjct: 241 RQDLFDNRH--------------PNYAGDLGLGINPALAARIREADLVLAVGTRLGE-VT 285
Query: 352 SK----LEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMF 407
++ L+ R +VH+ D+ E+G+V PD++I AD F LE
Sbjct: 286 TQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPA-AFAAALAALEPPAS---P 341
Query: 408 DFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQ---ILNELTDD--EETIISTGVGQHQ 462
++ W H Y + +P A+Q ++ L + + II+ G G +
Sbjct: 342 AWAEWTAAAHA-------DYLAWSAPLPGPGAVQLGEVMAWLRERLPADAIITNGAGNYA 394
Query: 463 MWAIQFYMYKRAR-QLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQEL 521
W +F+ ++R R QL +S GSMG+GLPAA+ A + P VV GDG F+MN QEL
Sbjct: 395 TWLHRFFRFRRYRTQLAPTS--GSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQEL 452
Query: 522 AAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC 581
A +P+ ++++NN G +++R + + + L + PD A A
Sbjct: 453 ATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTN--------PDFAALARAY 504
Query: 582 GIPAARVTKKKDVRAAIQLMLETPGPYLLDVMV 614
G V + +D A + L + P L+++ +
Sbjct: 505 GGHGETVERTEDFAPAFERALASGKPALIEIRI 537
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 247 bits (634), Expect = 3e-74
Identities = 168/571 (29%), Positives = 264/571 (46%), Gaps = 54/571 (9%)
Query: 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGY 126
DK + GAD++V++L QGV VF PG + +L S I+ RHEQ F A
Sbjct: 2 DKKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAI 61
Query: 127 ARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEV 186
R +G PGV LV+SGPGV+N+ TGL+ A ++ P++AI GQV + Q + V +
Sbjct: 62 GRLTGKPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVAL 121
Query: 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLP 246
R +TK++ V D D++ ++ AF A SGRPG + +P DV P P
Sbjct: 122 FRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDVVDAPVTSKAIAPLSKP 181
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVG--GGCLNSSEELRKFVGLTGIPVTCTT 304
+ P++ + LA +LI +K PVL +G + +R+ + T +PV T
Sbjct: 182 KLGPASPEDINYLA-----ELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVETF 236
Query: 305 MGLG-----LFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAG---VRFNERMTSKLED 356
G L D R VG+F + + + DL++ G + + R + D
Sbjct: 237 QAAGVISRELE---DHFFGR-VGLFRNQPGDELLKKADLVITIGYDPIEYEPRNWNSEGD 292
Query: 357 FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMN-----MILESKGVGFMFDFSA 411
A I+HID+ EI P+ + D + + + L + + +
Sbjct: 293 ----ATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLDGLSLSPQSLEIL---EE 345
Query: 412 WREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMW-AIQFYM 470
R +L E + P + + P I+ L ++ D+ T ++ VG H +W A F
Sbjct: 346 LRAQLEEL-AERPARLEEGA--VHPLRIIRALQDIVTDDTT-VTVDVGSHYIWMARYFRS 401
Query: 471 YKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQEL--AAIKAEN 528
Y R LL S+G ++G LP A+ AA+ PG VV + GDG F+ + EL A N
Sbjct: 402 Y-EPRHLLFSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVRLKLN 460
Query: 529 IPVKILLINNQYLGMNVEY--EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA 586
I V I+ + Y M VE+ E +Y ++ + G D +K+AE+ G
Sbjct: 461 I-VHIIWNDGHY-NM-VEFQEEMKYGRSSGVD--FGP--------VDFVKYAESFGAKGL 507
Query: 587 RVTKKKDVRAAIQLMLETPGPYLLDVMVSYQ 617
RVT ++ ++ L T GP ++D+ V Y
Sbjct: 508 RVTSPDELEPVLREALATDGPVVIDIPVDYS 538
>gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic.
Acetolactate synthase (EC 2.2.1.6) combines two
molecules of pyruvate to yield 2-acetolactate with the
release of CO2. This reaction may be involved in either
valine biosynthesis (biosynthetic) or conversion of
pyruvate to acetoin and possibly to 2,3-butanediol
(catabolic). The biosynthetic type, described by
TIGR00118, is also capable of forming
acetohydroxybutyrate from pyruvate and 2-oxobutyrate for
isoleucine biosynthesis. The family described here, part
of the same larger family of thiamine
pyrophosphate-dependent enzymes (pfam00205, pfam02776)
is the catabolic form, generally found associated with
in species with acetolactate decarboxylase and usually
found in the same operon. The model may not encompass
all catabolic acetolactate synthases, but rather one
particular clade in the larger TPP-dependent enzyme
family [Energy metabolism, Fermentation].
Length = 539
Score = 246 bits (629), Expect = 1e-73
Identities = 166/571 (29%), Positives = 274/571 (47%), Gaps = 52/571 (9%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
GAD++V+ LE QGV VF PG + +L I I+ RHEQ F A+ R +G
Sbjct: 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITG 60
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
PGV LV+SGPG +N++TGL A S+ P++AI GQV + L Q + V + R +T
Sbjct: 61 KPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPIT 120
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCK---LPSC 248
K++ V D D + ++ AF A SG+PG + +P DV + P +P+
Sbjct: 121 KYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVV--------DSPVSVKAIPAS 172
Query: 249 ISSLPKEPDELALRQTLKLIVESKNPVLCVG--GGCLNSSEELRKFVGLTGIPVTCTTMG 306
+ + A+ + + I +K PVL +G ++E +R+ + T +PV T G
Sbjct: 173 YAPKLGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQG 232
Query: 307 LG-----LFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAG---VRFNERMTSKLEDFA 358
G L D R VG+F + + + DL++ G + + R + D
Sbjct: 233 AGAVSRELE---DHFFGR-VGLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWNSEND-- 286
Query: 359 TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES-KGVGFMFDFSAWREELH 417
A IVHID++ +I PD+ + D + + ++++ E G D A E+L
Sbjct: 287 --ATIVHIDVEPAQIDNNYQPDLELVGD---IASTLDLLAERIPGYELPPDALAILEDLK 341
Query: 418 EQK---KKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRA 474
+Q+ + P + K + P I+ + + D+ T ++ +G H +W +++ RA
Sbjct: 342 QQREALDRVPATLKQAH--LHPLEIIKAMQAIVTDDVT-VTVDMGSHYIWMARYFRSYRA 398
Query: 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQEL--AAIKAENIPVK 532
R LL S+G ++G LP A+GAA+ P VV + GDG F+ + EL A NI V
Sbjct: 399 RHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVRLKLNI-VH 457
Query: 533 ILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKK 592
I+ +N Y + + E +Y R++ P+ D +K+AE+ G RV
Sbjct: 458 IIWNDNGYNMVEFQEEMKY---QRSSGVDFGPI-------DFVKYAESFGAKGLRVESPD 507
Query: 593 DVRAAIQLMLETPGPYLLDVMVSYQEHVVPM 623
+ ++ +E GP ++D+ V Y ++ M
Sbjct: 508 QLEPTLRQAMEVEGPVVVDIPVDYSDNPKLM 538
>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
Length = 549
Score = 240 bits (614), Expect = 2e-71
Identities = 158/558 (28%), Positives = 272/558 (48%), Gaps = 40/558 (7%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGT 132
A++I+ LE G+ ++ PG + + ++ +S ++ + RHE+G AA A+ +G
Sbjct: 5 AEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGK 64
Query: 133 PGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTK 192
P C+ +SGPG +++ GL DA D P++A+TGQV ++G D FQE+ + ++ +
Sbjct: 65 PSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDVAV 124
Query: 193 HNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELA--VPNWNQPCKLPSCIS 250
N ++++ ++ II+ A A S R G I++PVD+ + + + N +
Sbjct: 125 FNQILINPENAEYIIRRAIREAISKR-GVAHINLPVDILRKSSEYKGSKNTE------VG 177
Query: 251 SLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLF 310
+ D + +LI ES+ PVL +GGG +E+ +F G P+ T G G+
Sbjct: 178 KVKYSID---FSRAKELIKESEKPVLLIGGGTRGLGKEINRFAEKIGAPIIYTLNGKGIL 234
Query: 311 PCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATR-AKIVHIDID 369
P D + +G+ GT + A+++ DLL+ G F +F + AK++ +DID
Sbjct: 235 PDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSF------PYVNFLNKSAKVIQVDID 288
Query: 370 SNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKT 429
++ IGK D+S V +N+ +E K F + +E+ + K S
Sbjct: 289 NSNIGKRLDVDLSYPIP---VAEFLNIDIEEKSDKFYEELKGKKEDWLDSISKQENSLDK 345
Query: 430 FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFG 489
+ PQ I+++ + I+ T G MW + + + + S+ GSMG G
Sbjct: 346 ---PMKPQRVAYIVSQKCKKDAVIV-TDTGNVTMWTARHFRASGEQTFIFSAWLGSMGIG 401
Query: 490 LPAAMGAAVA-NPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYE 548
+P ++GA+ A V+ GDG F M + EL K ++PVKI++ NN LGM +++E
Sbjct: 402 VPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPVKIIIYNNSKLGM-IKFE 460
Query: 549 DRYFEANRANSFLGDPLRKSEIF-PDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGP 607
+G P +++ PD K AE+ G R+ + K+ I+ L T GP
Sbjct: 461 QE---------VMGYPEWGVDLYNPDFTKIAESIGFKGFRLEEPKEAEEIIEEFLNTKGP 511
Query: 608 YLLDVMVSYQEHVVPMIP 625
+LD +V E PM P
Sbjct: 512 AVLDAIVDPNER--PMPP 527
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 241 bits (616), Expect = 2e-71
Identities = 153/560 (27%), Positives = 262/560 (46%), Gaps = 49/560 (8%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSL--TRSNIRSILPRHEQGGIFAAEGYA 127
K + +V+ L+ G+ V+ PG + + +L + I+ I RHE+ AA YA
Sbjct: 4 IKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYA 63
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVT 187
+ +G GVCL GPG +++ GL DA D +P+LA+ GQV+ LLGTD FQE+ + ++
Sbjct: 64 KLTGKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMF 123
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDV--QLELAVPNWNQPCKL 245
+ +N+ ++ +++P I+ +A A + VL IP D+ Q N
Sbjct: 124 EDVAVYNHQIMSAENLPEIVNQAIRTAYEKKGVAVLT-IPDDLPAQKIKDTTNKTVDTFR 182
Query: 246 PSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTM 305
P+ P +++ KLI ++K PV+ G G ++ EEL F IP+ T
Sbjct: 183 PTVP-----SPKPKDIKKAAKLINKAKKPVILAGLGAKHAKEELLAFAEKAKIPIIHTLP 237
Query: 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDF-ATRAKIV 364
G+ P L +G GT A A+ E DLL+ G + D+ +AK +
Sbjct: 238 AKGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTNYPYV------DYLPKKAKAI 291
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE-SKGVGFM----FDFSAWREELHEQ 419
ID D IGK +V + DAK +++ ++ + F+ + + W + + E
Sbjct: 292 QIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIKHVEDRRFLEACQENMAKWWKWMEED 351
Query: 420 KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLT 479
+ I P+ + + ++ DD + ++S VG +W+ ++ ++ +
Sbjct: 352 ENNASTP-------IKPERVMAAIQKIADD-DAVLSVDVGTVTVWSARYLNLGTNQKFII 403
Query: 480 SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539
SS G+MG GLP A+ A +A P + I GDG F M +Q+ +P+ ++++NNQ
Sbjct: 404 SSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNNQ 463
Query: 540 YLGMNVEYEDRY-----FEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV 594
L ++YE + + + ++ D KFAEACG RV K +++
Sbjct: 464 QLAF-IKYEQQAAGELEYAIDLSD-------------MDYAKFAEACGGKGYRVEKAEEL 509
Query: 595 RAAIQLMLETPGPYLLDVMV 614
A + L P ++DV V
Sbjct: 510 DPAFEEALAQDKPVIIDVYV 529
>gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit;
Validated.
Length = 578
Score = 229 bits (586), Expect = 4e-67
Identities = 161/573 (28%), Positives = 245/573 (42%), Gaps = 61/573 (10%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIE--IHQSLTRSNIRSILPRHEQGGIFAAEGYARS 129
A I AL+R GV +F G S+ + + IR I R E G A+GYAR
Sbjct: 16 VAHAIARALKRHGVEQIF----GQSLPSALFLAAEAIGIRQIAYRTENAGGAMADGYARV 71
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY 189
SG V +GP T ++ L +A S+PI+A+ V++ +AFQE+ + + +
Sbjct: 72 SGKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQS 131
Query: 190 MTKHNYLVLDVDDIPRI---IKEAFFIATSGRPGPVLIDIPVDVQLEL----AVPNWNQP 242
TK V V RI + +AF ATSGRPGPV++ +P D+ A P N
Sbjct: 132 CTK---WVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLLTAAAAAPAAPRSNSL 188
Query: 243 CKLPSCISSLPKE-PDELALRQTLKLIVESKNPVLCVGGG--CLNSSEELRKFVGLTGIP 299
P L + P L + L+ +++ PV+ GGG +S L L G+P
Sbjct: 189 GHFP-----LDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLP 243
Query: 300 VTCTTMGLGLFPCTDELCLRMVGMF-----GTVYANYAVNECDLLLAAGVRFNERMTSKL 354
V T MG G T L L +VG + V E D++L G R N+ T
Sbjct: 244 VATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSW 303
Query: 355 EDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWRE 414
+ +A+ +HID+D E+G+ + + DA+L + L + + + R
Sbjct: 304 SLYPEQAQYIHIDVDGEEVGR-NYEALRLVGDARLTLAALTDALRGRDLAAR---AGRRA 359
Query: 415 ELHEQKKKYPFSYKTFGEEIPPQYAI--------QILNELTD--DEETIISTGVGQHQMW 464
L + E+ P +I+ EL +TI+ +W
Sbjct: 360 ALEPAIAAG---REAHREDSAPVALSDASPIRPERIMAELQAVLTGDTIVVADASYSSIW 416
Query: 465 AIQFYMYKRARQ-LLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAA 523
F +RA LT G +G+G+P A+GA VA PGA V+ + GDG F EL
Sbjct: 417 VANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAELET 476
Query: 524 IKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLG---DPLRKSEIFPDMLKFAEA 580
+ +PV I+++NN LG F+ + G D + + D A A
Sbjct: 477 ARRMGVPVTIVVLNNGILG---------FQKHAETVKFGTHTDACHFAAV--DHAAIARA 525
Query: 581 CGIPAARVTKKKDVRAAIQLMLETPGPYLLDVM 613
CG RV ++ A+ + PGP L++V+
Sbjct: 526 CGCDGVRVEDPAELAQALAAAMAAPGPTLIEVI 558
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 228 bits (583), Expect = 6e-67
Identities = 158/564 (28%), Positives = 248/564 (43%), Gaps = 57/564 (10%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQS------LTRSNIRSILPRHEQGGIFAAEG 125
++I LE+ GV T F I IH R IR + R E G + A+
Sbjct: 5 VGELIAAFLEQCGVKTAFGV-----ISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADA 59
Query: 126 YARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA--FQEIP- 182
+AR SG GV L S+G G N L++A + P+L ITGQ+ L D E P
Sbjct: 60 HARVSGGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPD 119
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ-LELAVPNWNQ 241
+ + R ++K + V + I+EA +A + GPV ++IP+D+Q E+ +P+
Sbjct: 120 QLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDIQAAEIELPDDLA 179
Query: 242 PCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVT 301
P + EPD A+ + + + ++ P+L +GGG ++ E+++ V L G V
Sbjct: 180 PVHVAV------PEPDAAAVAELAERLAAARRPLLWLGGGARHAGAEVKRLVDL-GFGVV 232
Query: 302 CTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRF--NERMTSKLEDFAT 359
+T G G+ P L V A Y CDLLL G R NE + L
Sbjct: 233 TSTQGRGVVPEDHPASLGAFNNSAAVEALYK--TCDLLLVVGSRLRGNETLKYSLA---L 287
Query: 360 RAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVG---FMFDFSAWREEL 416
++ +D D+ G+ D+ + DA V R+ LE + F D A RE
Sbjct: 288 PRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLEGRLSVDPAFAADLRAAREAA 347
Query: 417 HEQKKKYPFSYKTFGEEIP---PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKR 473
+K Y + + P+ + ++T IS +++ +++
Sbjct: 348 VADLRKGLGPYAKLVDALRAALPRDGN-WVRDVT------ISNSTWGNRL----LPIFEP 396
Query: 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKI 533
R + + G G +G GL A+GAA+A PG V + GDG ++NL ELA EN + I
Sbjct: 397 -RANVHALG-GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANMVI 454
Query: 534 LLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD 593
+L+N+ G+ +D + R L PD A + G+P RVT D
Sbjct: 455 VLMNDGGYGVIRNIQDAQYGGRRYYVELHT--------PDFALLAASLGLPHWRVTSADD 506
Query: 594 VRAAIQLMLETPGPYLLDV-MVSY 616
A ++ L GP L++V M+S
Sbjct: 507 FEAVLREALAKEGPVLVEVDMLSI 530
>gnl|CDD|132918 cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) binding domain of POX
and related proteins. Thiamine pyrophosphate (TPP
family), pyrimidine (PYR) binding domain of pyruvate
oxidase (POX) and related protiens subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. A
polar interaction between the conserved glutamate of the
PYR domain and the N1' of the TPP aminopyrimidine ring
is shared by most TPP-dependent enzymes, and
participates in the activation of TPP. For glyoxylate
carboligase, which belongs to this subfamily, but lacks
this conserved glutamate, the rate of the initial TPP
activation step is reduced but the ensuing steps of the
enzymic reaction proceed efficiently. The PYR and PP
domains have a common fold, but do not share strong
sequence conservation. The PP domain is not included in
this sub-family. Most TPP-dependent enzymes have the PYR
and PP domains on the same subunit although these
domains can be alternatively arranged in the primary
structure. TPP-dependent enzymes are multisubunit
proteins, the smallest catalytic unit being a
dimer-of-active sites, for many the active sites lie
between PP and PYR domains on different subunits. POX
decarboxylates pyruvate, producing hydrogen peroxide and
the energy-storage metabolite acetylphosphate. This
subfamily includes pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC catalyzes the
conversion of pyruvate to acetaldehyde and CO2 in
alcoholic fermentation. IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway in plants and
various plant-associated bacteria, it catalyzes the
decarboxylation of IPA to IAA. This subfamily also
includes the large catalytic subunit of acetohydroxyacid
synthase (AHAS). AHAS catalyzes the condensation of two
molecules of pyruvate to give the acetohydroxyacid,
2-acetolactate, a precursor of the branched chain amino
acids, valine and leucine. AHAS also catalyzes the
condensation of pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis.
Methanococcus jannaschii sulfopyruvate decarboxylase
(MjComDE) and phosphonopyruvate decarboxylase (PpyrDc)
also belong to this subfamily. PpyrDc is a homotrimeric
enzyme having the PP and PYR domains tandemly arranged
on the same subunit. It functions in the biosynthesis of
C-P compounds such as bialaphos tripeptide in
Streptomyces hygroscopicus. MjComDE is a dodecamer
having the PYR and PP domains on different subunits, it
has six alpha (PYR/ComD) subunits and six beta (PP/ComE)
subunits. MjComDE catalyzes the decarboxylation of
sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M
pathway.
Length = 155
Score = 214 bits (548), Expect = 1e-66
Identities = 83/155 (53%), Positives = 106/155 (68%)
Query: 74 DIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTP 133
D +VEAL+ +GV VF PGGA + + +L RS IR IL RHEQG + A+GYAR++G P
Sbjct: 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKP 60
Query: 134 GVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKH 193
GV LV+SGPG+TN +TGL +AY DSIP+L ITGQ G AFQEI V + R +TK
Sbjct: 61 GVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKW 120
Query: 194 NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228
Y V ++IP ++ AF IA SGRPGPV +D+P
Sbjct: 121 AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155
>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.
Length = 588
Score = 215 bits (550), Expect = 8e-62
Identities = 145/557 (26%), Positives = 238/557 (42%), Gaps = 58/557 (10%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGV 135
VE L+ G+T F G A ++ + IR I HEQ A+GY R +G G+
Sbjct: 12 FVETLQAHGITHAFGIIGSAFMDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGM 71
Query: 136 CLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNY 195
+ +GPG+TN +T + AY P++ +T Q K +G FQE + + MTK+
Sbjct: 72 VIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQE 131
Query: 196 LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCK--LPSCISSLP 253
V D + ++ F A GP I+IP D + +P L
Sbjct: 132 EVRDPSRMAEVLNRVFDKAKRES-GPAQINIPRDY--------FYGVIDVEIPQ-PVRLE 181
Query: 254 KEP-DELALRQTLKLIVESKNPVLCVGGGCLNSS--EELRKFVGLTGIPVTCTTMGLGLF 310
+ E +L + +L+ E+K PV+ G G + S EE + PV C + F
Sbjct: 182 RGAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYLHNDAF 241
Query: 311 PCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT---SKLEDFATRAKIVHID 367
P + L + +G G+ A + + D++LA G R N T ++ + AKI+ +D
Sbjct: 242 PGSHPLWVGPLGYNGSKAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVD 301
Query: 368 IDSNEIGKVKLPDVSICADAKLVFN------------------RMNMILESKGVGFMFDF 409
I+ + IG K V IC DAK V R +I K
Sbjct: 302 INPDRIGLTKKVSVGICGDAKAVARELLARLAERLAGDAGREERKALIAAEK-------- 353
Query: 410 SAWREEL----HEQ-KKKYPFSYKTFGEEIPPQYAIQILNELTD--DEETIISTGVGQHQ 462
SAW +EL HE ++ + + + Q L E+ E+ I+ST +G +
Sbjct: 354 SAWEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALREIQKALPEDAIVSTDIGNNC 413
Query: 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELA 522
A + +++ R+ L FG+ G+ PA +GA +A P VV GDG++ +++ E+
Sbjct: 414 SIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGISMNEVM 473
Query: 523 AIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACG 582
N PV ++ N G + + ++ N F+G L + + AEA G
Sbjct: 474 TAVRHNWPVTAVVFRNYQWGAEKKNQVDFYN----NRFVGTELDNNVSYA---GIAEAMG 526
Query: 583 IPAARVTKKKDVRAAIQ 599
V ++++ A++
Sbjct: 527 AEGVVVDTQEELGPALK 543
>gnl|CDD|217224 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal
TPP binding domain.
Length = 172
Score = 201 bits (514), Expect = 2e-61
Identities = 81/168 (48%), Positives = 107/168 (63%), Gaps = 2/168 (1%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYAR 128
GAD + EAL+ GV VF PG + + + +L +S IR +L RHEQG FAA+GYAR
Sbjct: 1 MTGADALAEALKALGVDHVFGVPGSSILPLLDALAKSPGIRYVLTRHEQGAGFAADGYAR 60
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQ-EIPVVEVT 187
++G PGV LV+SGPG TN +TGL +AY D IP+L I+GQV LG Q E+ + +
Sbjct: 61 ATGKPGVVLVTSGPGATNALTGLANAYVDGIPVLVISGQVPTSDLGRGGLQEELDQLALF 120
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELA 235
R +TK V D+IP + AF A SGRPGPV +++P+DVQLE
Sbjct: 121 RPVTKWAERVTSPDEIPEALDRAFRAALSGRPGPVYLELPLDVQLEEV 168
>gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase.
Members of this protein family are sulfoacetaldehyde
acetyltransferase, an enzyme of taurine utilization.
Taurine, or 2-aminoethanesulfonate, can be used by
bacteria as a source of carbon, nitrogen, and sulfur
[Central intermediary metabolism, Other].
Length = 579
Score = 213 bits (543), Expect = 5e-61
Identities = 148/551 (26%), Positives = 242/551 (43%), Gaps = 41/551 (7%)
Query: 77 VEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVC 136
VE L GVT F G A ++ + IR I HEQG A+G+AR +G +
Sbjct: 9 VEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMV 68
Query: 137 LVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYL 196
+ +GPGVTN +T + AY P++ +T + K +G FQE + + + TK+
Sbjct: 69 IGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGH 128
Query: 197 VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP--CKLPSCISSLPK 254
V + ++ F A GP ++IP D + ++P L +
Sbjct: 129 VRHPSRMAEVLNRCFERAWREM-GPAQLNIPRDY--------FYGEIDVEIPR-PVRLDR 178
Query: 255 EP-DELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFP 311
+L Q +L+ E+K PV+ GGG + ++ EE + G PV + + FP
Sbjct: 179 GAGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFP 238
Query: 312 CTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT---SKLEDFATRAKIVHIDI 368
+ L + +G G+ A +++ D++LA G R T ++ + AKI+ +D
Sbjct: 239 ASHPLWVGPLGYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDA 298
Query: 369 DSNEIGKVKLPDVSICADAKLVFNRMNMILESK---------GVGFMFDFSAWREELHE- 418
++ IG VK V IC DAK + L K + SAW +EL E
Sbjct: 299 NAKMIGLVKKVTVGICGDAKAAAAEILQRLAGKAGDANRAERKAKIQAERSAWEQELSEM 358
Query: 419 QKKKYPFSYKTF----GEEIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYMYK 472
++ PFS EE + Q+L EL E+ I+ST +G A + ++
Sbjct: 359 THERDPFSLDMIVEQRQEEGNWLHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFE 418
Query: 473 RARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVK 532
+ R+ L FG+ G+ P +GA +A P VV GDG++ M++ E+ +IPV
Sbjct: 419 KPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSMNEIMTAVRHDIPVT 478
Query: 533 ILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKK 592
++ N+ G + + ++ N F+G L F A+A G V K +
Sbjct: 479 AVVFRNRQWGAEKKNQVDFYN----NRFVGTELESELSF---AGIADAMGAKGVVVDKPE 531
Query: 593 DVRAAIQLMLE 603
DV A++ +
Sbjct: 532 DVGPALKKAIA 542
>gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional.
Length = 535
Score = 206 bits (526), Expect = 6e-59
Identities = 104/320 (32%), Positives = 159/320 (49%), Gaps = 16/320 (5%)
Query: 77 VEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVC 136
V LE GV TVF PG ++E+++ L S IR + PRHEQG F A+GYAR SG PGVC
Sbjct: 9 VRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVC 68
Query: 137 LVSSGPGVTNIMTGLMDAYSDSIPILAITG-QVSQKL-LGTDAFQEIPVVE-VTRYMTKH 193
+ +GPG+TNI T + AY+DSIP+L I+ L G E+P + +
Sbjct: 69 FIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAF 128
Query: 194 NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLP 253
++ ++ +D+P ++ AF + S RP PV I+IP+DV A P P+
Sbjct: 129 SHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVLAAPADHLLPAPPTRPA-----R 183
Query: 254 KEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCT 313
P AL Q + + ++ P++ GGG L ++ LR PV T GL P
Sbjct: 184 PGPAPAALAQAAERLAAARRPLILAGGGALAAAAALRALAERLDAPVALTINAKGLLPAG 243
Query: 314 DELCLRMVGMFGTVYANYA-VNECDLLLAAGVRFNE---RMTSKLEDFATRAKIVHIDID 369
L +G ++ A A + E D++LA G E + F +++ IDID
Sbjct: 244 HPLL---LGASQSLPAVRALIAEADVVLAVGTELGETDYDVYFD-GGFPLPGELIRIDID 299
Query: 370 SNEIGKVKLPDVSICADAKL 389
+++ + P +++ DA+
Sbjct: 300 PDQLARNYPPALALVGDARA 319
Score = 98.5 bits (246), Expect = 1e-21
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 11/143 (7%)
Query: 480 SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539
S+G+G++G+GLPAA+GAA+ P VV + GDG L ELA+ ++P+ +LL NN
Sbjct: 403 STGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADLPLIVLLWNND 462
Query: 540 YLGMNVEYEDRYFEANRANSFLG-DPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
G E R + R +G DP PD + A A G A RV + ++AA+
Sbjct: 463 GYG-----EIRRYMVARDIEPVGVDPYT-----PDFIALARAFGCAAERVADLEQLQAAL 512
Query: 599 QLMLETPGPYLLDVMVSYQEHVV 621
+ PGP L++V + V
Sbjct: 513 RAAFARPGPTLIEVDQACWFAAV 535
>gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional.
Length = 574
Score = 201 bits (513), Expect = 1e-56
Identities = 167/562 (29%), Positives = 252/562 (44%), Gaps = 42/562 (7%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSG 131
AD I + LE+ GV ++ G + + SL R I + RHE+ FAA A+ +G
Sbjct: 6 ADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTG 65
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
VC S GPG +++ GL D + + +P+LAI + +G+ FQE E+ R +
Sbjct: 66 ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECS 125
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL----ELAVPNWNQPCKLPS 247
+ LV + + +PR++ A A R G ++ +P DV L E A P+W P
Sbjct: 126 HYCELVSNPEQLPRVLAIAMRKAILNR-GVAVVVLPGDVALKPAPERATPHWYHA-PQPV 183
Query: 248 CISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGL 307
P E LR+ L+ S N L G GC + +EL P+ G
Sbjct: 184 VT------PAEEELRKLAALLNGSSNITLLCGSGCAGAHDELVALAETLKAPIVHALRGK 237
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
+ + M G+ G +A+ CD LL G F R + + T AKI+ ID
Sbjct: 238 EHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTDFPYR-----QFYPTDAKIIQID 292
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFD-----FSAWREELHEQKKK 422
I+ +G+ D+ + D K + +LE K D + R+ L +
Sbjct: 293 INPGSLGRRSPVDLGLVGDVKATLAALLPLLEEKTDRKFLDKALEHYRKARKGLDDLAVP 352
Query: 423 YPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSG 482
G+ I PQY + ++E D+ I + VG +WA ++ R+LL S
Sbjct: 353 SDG-----GKPIHPQYLARQISEFAADD-AIFTCDVGTPTVWAARYLKMNGKRRLLGSFN 406
Query: 483 FGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
GSM +P A+GA A+PG VV + GDG F M + + ++ +PVKI++ NN LG
Sbjct: 407 HGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQLKLPVKIVVFNNSVLG 466
Query: 543 MNVEYEDRYFEANRANSFL--GDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQL 600
V E +A +L G L PD AEACGI RV K ++ A+Q
Sbjct: 467 F-VAME------MKAGGYLTDGTDLHN----PDFAAIAEACGITGIRVEKASELDGALQR 515
Query: 601 MLETPGPYLLDVMVSYQEHVVP 622
GP L+DV+ + QE +P
Sbjct: 516 AFAHDGPALVDVVTAKQELAMP 537
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 195 bits (496), Expect = 2e-54
Identities = 143/555 (25%), Positives = 242/555 (43%), Gaps = 34/555 (6%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLT--RSNIRSILPRHEQGGIFAAEGYARS 129
+ +++ LE GV ++ PGG+ +L+ R I I RHE+ G AA A+
Sbjct: 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKL 60
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY 189
+G GVC S+GPG T+++ GL DA D +P+LA+ GQV + D FQE+ +
Sbjct: 61 TGKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYAD 120
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCI 249
+ +N + + +P +I EA A + G ++ IPVD + N +
Sbjct: 121 VAVYNRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVDFGWQEIPDNDYYASSVSYQT 179
Query: 250 SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGL 309
LP PD A+ + ++ + ++ PV+ G G + EEL IP+ T + G+
Sbjct: 180 PLLP-APDVEAVTRAVQTLKAAERPVIYYGIGARKAGEELEALSEKLKIPLISTGLAKGI 238
Query: 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAG--VRFNERMTSKLEDFATRAKIVHID 367
L AN A+ + DL+L G F E + F + ID
Sbjct: 239 IEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYPFAEVS----KAFKNTKYFIQID 294
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQK--KKY-- 423
ID ++GK D+++ ADAK + +E + W+ + K + Y
Sbjct: 295 IDPAKLGKRHHTDIAVLADAKKALAAILAQVEPRE-----STPWWQANVANVKNWRAYLA 349
Query: 424 PFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
KT G + + +N++ +D + I S VG + + + + +TS+ F
Sbjct: 350 SLEDKTEG-PLQAYQVYRAINKIAED-DAIYSIDVGDININSNRHLKMTPKNKWITSNLF 407
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG- 542
+MG G+P A+ A + P V ++ GDG+F M +Q+L ++PV ++ +N G
Sbjct: 408 ATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINIVFSNCTYGF 467
Query: 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQ--L 600
+ E ED +G + D K AE G RV K + + A +
Sbjct: 468 IKDEQEDTN------QPLIGVDFNDA----DFAKIAEGVGAVGFRVNKIEQLPAVFEQAK 517
Query: 601 MLETPGPYLLDVMVS 615
++ P L+D ++
Sbjct: 518 AIKQGKPVLIDAKIT 532
>gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional.
Length = 565
Score = 194 bits (494), Expect = 3e-54
Identities = 148/572 (25%), Positives = 236/572 (41%), Gaps = 52/572 (9%)
Query: 65 APDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAE 124
A K K A+ + E L+ +GV +F +P + + + IR ++ R E+ + A+
Sbjct: 15 AEAKTMKVAEAVAEILKEEGVELLFGFPVNELFD---AAAAAGIRPVIARTERVAVHMAD 71
Query: 125 GYAR-SSG-TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIP 182
GYAR +SG GV V GPG N G+ AY DS+P+L + + TD
Sbjct: 72 GYARATSGERVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTGYPRGS--TDVAPNFE 129
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
+ R++TK V D++P +++ AF +GRPGPV++++PVDV +
Sbjct: 130 SLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVDV--------LAEE 181
Query: 243 C-KLPSCISSLPK---EPDELALRQTLKLIVESKNPVLCVGGGCLNSS--EELRKFVGLT 296
+LP + D + + + L++ ++ PV+ G G L + EL++ L
Sbjct: 182 LDELPLDHRPSRRSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKELAELL 241
Query: 297 GIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLED 356
IPV T G FP L L G + + E D+L G +
Sbjct: 242 EIPVMTTLNGKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCSLTR--SYYGLP 299
Query: 357 FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRM-NMILESKGV--GFMFDFSAWR 413
I+H +D ++ K D + DA LV +M + G G +A
Sbjct: 300 MPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEI 359
Query: 414 EELHEQ--KKKYPFSYKTFGEEIP--PQYAIQILNELTDDEETIISTGVGQHQMWAIQFY 469
E + K P K + P P + L D + II+ G + FY
Sbjct: 360 EAVRAAWLAKWMP---KLTSDSTPINPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFY 416
Query: 470 MYKRARQLLTSSGFG---SMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKA 526
A + + G+G +G+GL AMGA +A P A+V+++ GD +F M +
Sbjct: 417 ---VASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVR 473
Query: 527 ENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA 586
E IP+ +L+NN +G + RA G D A A G
Sbjct: 474 ERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISG----------DYAAIARALGGYGE 523
Query: 587 RVTKKKDVRAAIQLML---ETPGPYLLDVMVS 615
RV + + A+ L + P LL+V+ S
Sbjct: 524 RVEDPEMLVPALLRALRKVKEGTPALLEVITS 555
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal
TPP binding domain.
Length = 151
Score = 180 bits (459), Expect = 1e-53
Identities = 65/161 (40%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM 516
+G HQMWA ++Y ++ R+ LTS G G+MG+GLPAA+GA +A P VV I GDG F M
Sbjct: 1 DIGCHQMWAARYYRFRPPRRYLTSGGLGTMGYGLPAAIGAKLARPDRPVVAIAGDGGFQM 60
Query: 517 NLQELAAIKAENIPVKILLINNQYLGM-----NVEYEDRYFEANRANSFLGDPLRKSEIF 571
NLQELA N+P+ ++++NN GM RY P K
Sbjct: 61 NLQELATAVRYNLPITVVVLNNGGYGMTRGQQTPFGGGRYSG----------PDGKDLPP 110
Query: 572 PDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDV 612
D K AEA G ARV +++ A++ LE GP L+DV
Sbjct: 111 VDFAKLAEAYGAKGARVESPEELEEALKEALEHDGPALIDV 151
>gnl|CDD|180614 PRK06546, PRK06546, pyruvate dehydrogenase; Provisional.
Length = 578
Score = 188 bits (479), Expect = 5e-52
Identities = 156/556 (28%), Positives = 239/556 (42%), Gaps = 50/556 (8%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSG 131
A+ +VE L GV ++ G + I ++ R+ I + RHE+ FAA A+ +G
Sbjct: 6 AEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTG 65
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEI-P---VVEVT 187
VC S GPG +++ GL DA+ P+LAI + +G+ FQE P VE +
Sbjct: 66 KLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECS 125
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATS-GRPGPVLIDIPVDVQLELAVPNWNQPCKLP 246
Y +V + PR++ A I + G ++ +P D+ E A P
Sbjct: 126 GY----CEMVSSAEQAPRVLHSA--IQHAVAGGGVSVVTLPGDIADEPAPEG-----FAP 174
Query: 247 SCISSLPKE--PDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTT 304
S IS PD +R I E+K L G G + E+ PV +
Sbjct: 175 SVISPRRPTVVPDPAEVRALADAINEAKKVTLFAGAGVRGAHAEVLALAEKIKAPVGHSL 234
Query: 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIV 364
G + + M G+ G A+ A++E DLL+ G F + F +
Sbjct: 235 RGKEWIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILLGTDF------PYDQFLPDVRTA 288
Query: 365 HIDIDSNEIGKVKLPDVSICADAK-LVFNRMNMILESKGVGFMFDFSAWREELHEQKKKY 423
+DID +G+ D+++ D + + ++ E F+ H +K +
Sbjct: 289 QVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVKEKTDRRFLDRMLK----KHARKLEK 344
Query: 424 PFSYKTFGEE----IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLT 479
T E I P+Y IL+EL D+ + + G +WA ++ R+++
Sbjct: 345 VVGAYTRKVEKHTPIHPEYVASILDELAADD-AVFTVDTGMCNVWAARYITPNGRRRVIG 403
Query: 480 SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539
S GSM LP A+GA +A+PG V+ + GDG M L EL +K ++PVK+++ NN
Sbjct: 404 SFRHGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKLYDLPVKVVVFNNS 463
Query: 540 YLGMNVEYEDRYFEANRANSFLGDPLRKSEI---FPDMLKFAEACGIPAARVTKKKDVRA 596
LGM V+ E L D L D A A GI A RV KDVR
Sbjct: 464 TLGM-VKLE-----------MLVDGLPDFGTDHPPVDYAAIAAALGIHAVRVEDPKDVRG 511
Query: 597 AIQLMLETPGPYLLDV 612
A++ PGP L+DV
Sbjct: 512 ALREAFAHPGPALVDV 527
>gnl|CDD|215786 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central
domain. The central domain of TPP enzymes contains a
2-fold Rossman fold.
Length = 136
Score = 162 bits (413), Expect = 2e-47
Identities = 64/136 (47%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 261 LRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCL 318
+ + +L+ +K PV+ GGG S SEELR GIPV T MG G FP L L
Sbjct: 1 IDKAAELLASAKRPVILAGGGVRRSGASEELRALAEKLGIPVVTTLMGKGAFPEDHPLYL 60
Query: 319 RMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKL 378
M+GM GT AN A+ E DL+LA G RF++R T L +FA AKI+HIDID EIGK
Sbjct: 61 GMLGMHGTPAANEALEEADLVLAIGARFDDRGTGSLPEFAPDAKIIHIDIDPAEIGKNYP 120
Query: 379 PDVSICADAKLVFNRM 394
DV I DAK +
Sbjct: 121 VDVPIVGDAKEALEAL 136
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and the branched
chain alpha-keto acid dehydrogenase complexes.
Length = 168
Score = 163 bits (415), Expect = 3e-47
Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 10/176 (5%)
Query: 441 QILNELTD--DEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAV 498
++L L E+ I+ G WA ++ +R R+ LTS+GFG+MG+GLPAA+GAA+
Sbjct: 1 RVLAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAAL 60
Query: 499 ANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRAN 558
A P VV I GDG F+M QELA +PV +++ NN G +++ ++ +
Sbjct: 61 AAPDRPVVCIAGDGGFMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSG 120
Query: 559 SFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMV 614
+ L PD AEA G RV +D+ AA+ L GP L++V
Sbjct: 121 TDLS--------NPDFAALAEAYGAKGVRVEDPEDLEAALAEALAAGGPALIEVKT 168
>gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional.
Length = 542
Score = 171 bits (435), Expect = 3e-46
Identities = 137/553 (24%), Positives = 227/553 (41%), Gaps = 42/553 (7%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
+ L+ GV T+F GG ++ IR I RHEQ FAAE +A+ +
Sbjct: 7 AGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTR 66
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
PGV ++++GPGVTN M+ + A + P++ + G+ G + QEI V +T
Sbjct: 67 VPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVT 126
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISS 251
K ++ R++ +A A + GPV +D P+D +A P ++
Sbjct: 127 KFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHAFSMA-----DDDGRPGALTE 181
Query: 252 LPKE--PDELALRQTLKLIVESKNPVLCVGGGC-LNSSEE-LRKFVGLTGIPVTCTTMGL 307
LP PD AL + L+ E++ PV+ G +E L + GIPV MG
Sbjct: 182 LPAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMGR 241
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
G+ P L + A+ E D++L GV + R+ F A++VH+D
Sbjct: 242 GVVPADHPL-------AFSRARGKALGEADVVLVVGVPMDFRLG--FGVFGGTAQLVHVD 292
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHE-QKKKYPFS 426
+ + + D + + + + D W EEL +
Sbjct: 293 DAPPQRAHHRPVAAGLYGDLSAILSALAGAGGDRT-----DHQGWIEELRTAETAARARD 347
Query: 427 YKTFGEEIPPQYAIQI---LNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
++ P + +++ L L D + +I G G +A ++ R L F
Sbjct: 348 AAELADDRDPIHPMRVYGELAPLLDRDAIVIGDG-GDFVSYAGRYIDPYRPGCWLDPGPF 406
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G +G G A+ A +A P VV + GDG+F +L ++ + N+PV ++ NN G+
Sbjct: 407 GCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVIGNNGIWGL 466
Query: 544 NVEYEDRYFEANRANSFLGD--P-LRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQL 600
E EA D P R E+ A G VT ++ A++
Sbjct: 467 ----EKHPMEALYGYDVAADLRPGTRYDEV-------VRALGGHGELVTVPAELGPALER 515
Query: 601 MLETPGPYLLDVM 613
+ PYL++V+
Sbjct: 516 AFASGVPYLVNVL 528
>gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase. In a number of
bacteria, including Oxalobacter formigenes from the
human gut, a two-gene operon of oxc (oxalyl-CoA
decarboxylase) and frc (formyl-CoA transferase) encodes
a system for degrading and therefore detoxifying
oxalate. Members of this family are the thiamine
pyrophosphate (TPP)-containing enzyme oxalyl-CoA
decarboxylase [Cellular processes, Detoxification].
Length = 554
Score = 161 bits (410), Expect = 8e-43
Identities = 139/559 (24%), Positives = 248/559 (44%), Gaps = 42/559 (7%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G ++++AL+ G+ T++ G ++ + +R I RHEQ +AA +
Sbjct: 5 GFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQ 64
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA--FQEIPVVEVTRY 189
PGVCL S PG N +T L +A ++ P++ I+G + ++ ++E+ + +
Sbjct: 65 KPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKP 124
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCI 249
K Y VL +DI I A A SGRPG V +D+P V L + L +
Sbjct: 125 FAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAV-LGQTMEAEKAKKTLVKVV 183
Query: 250 SSLPKE-PDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMG 306
PK+ P ++ + ++L+ ++K P++ +G G + EE+R+FV TGIP +M
Sbjct: 184 DPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSMA 243
Query: 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT-SKLEDFATRAKIVH 365
GL P T ++A+ E D+++ G R N ++ K + + AK +
Sbjct: 244 KGLLPDTHPQS-------AAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQ 296
Query: 366 IDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKK--Y 423
+DI+ E+ + + D V + +L + G + + WR + + +K
Sbjct: 297 VDIEPTEMDSNRPIAAPVVGDIGSV---VQALLSAAKNGGVKPPADWRNAIKTKSEKNVA 353
Query: 424 PFSYKTFGEEIPPQY--AIQILNELTDDEETI--ISTGVGQHQMWAIQFYMYKRARQLLT 479
+ + E P Y A++ + ++ D I ++ G + MYK R L
Sbjct: 354 KMAERLSASESPMNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNVIDMYK-PRHRLD 412
Query: 480 SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539
+G MG G+ A+ AAV G VV ++GD +F + E+ I N+PV +++ NN
Sbjct: 413 VGTWGVMGIGMGYAIAAAVET-GKPVVALEGDSAFGFSGMEVETICRYNLPVCVVIFNN- 470
Query: 540 YLGMNVEYEDRYFEANRANSFLGDP----LRKSEIFPDMLKFAEACGIPAARVTKKKDVR 595
+ + N DP L + M+K A G VT +++
Sbjct: 471 ---------GGIYRGDDVNVVGADPAPTVLVHGARYDKMMK---AFGGVGYNVTTPDELK 518
Query: 596 AAIQLMLETPGPYLLDVMV 614
AA+ L + P L++ ++
Sbjct: 519 AALNEALASGKPTLINAVI 537
>gnl|CDD|181344 PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional.
Length = 597
Score = 162 bits (411), Expect = 1e-42
Identities = 160/610 (26%), Positives = 263/610 (43%), Gaps = 77/610 (12%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN--IRSILPRHEQGGIFAAEGYARSS 130
AD I+E L GV VF YPG + +L R++ + RHE+ F A +A+ +
Sbjct: 6 ADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFT 65
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GVCL +SGPG +++ GL DA D +P++AI GQ ++ LG QE+ + +
Sbjct: 66 GEVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQS----L 121
Query: 191 TK---HNYLVLDV--DDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCK- 244
K ++ + + + ++ A A + R + +P DVQ EL
Sbjct: 122 FKDVAGAFVQMVTVPEQLRHLVDRAVRTALAER-TVTAVILPNDVQ-ELEYEPPPHAHGT 179
Query: 245 LPSCIS-SLPKE-PDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTC 302
+ S + + P+ P + LR+ +++ + + VG G L +++E+ G V
Sbjct: 180 VHSGVGYTRPRVVPYDEDLRRAAEVLNAGRKVAILVGAGALGATDEVIAVAERLGAGVAK 239
Query: 303 TTMGLGLFPCTDELCLRMV----GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA 358
+G P D+ L V G+ GT + + ECD LL G F + L
Sbjct: 240 ALLGKAALP--DD--LPWVTGSIGLLGTKPSYELMRECDTLLMVGSSFP--YSEFLPKEG 293
Query: 359 TRAKIVHIDIDSNEIGKVKLP-DVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELH 417
A+ V IDID +G ++ P +V++ DA + +LE K +WRE +
Sbjct: 294 Q-ARGVQIDIDGRMLG-LRYPMEVNLVGDAAETLRALLPLLERK------KDRSWRERIE 345
Query: 418 EQKKKYPFSYKTF-------GEEIPPQYAIQILNE-LTDDEETIISTGVGQHQMW-AIQF 468
+ + ++T + + PQ L+ L D+ I++ G W A
Sbjct: 346 KWVAR---WWETLEARAMVPADPVNPQRVFWELSPRLPDN--AILTADSGSCANWYARDL 400
Query: 469 YMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKA- 526
M + L S +MG +P A+ A A+P V+ + GDG+ MN + EL +
Sbjct: 401 RMRRGMMASL-SGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKY 459
Query: 527 ----ENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDP-LRKSEIFPDM--LKFAE 579
+ + +L++NN+ L V +E R E GDP S+ PD+ +FAE
Sbjct: 460 WRQWSDPRLIVLVLNNRDLNQ-VTWEQRVME--------GDPKFEASQDLPDVPYARFAE 510
Query: 580 ACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP------YDKSFKDT 633
G+ RV + + AA L P +L+V VP +P K+F
Sbjct: 511 LLGLKGIRVDDPEQLGAAWDEALAADRPVVLEVKTDPN---VPPLPPHITLEQAKAFASA 567
Query: 634 ILEDDGRALH 643
+L+ D A
Sbjct: 568 LLKGDPDAGG 577
>gnl|CDD|132922 cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding domain of POX.
Thiamine pyrophosphate (TPP family), pyrimidine (PYR)
binding domain of pyruvate oxidase (POX) subfamily. The
PYR domain is found in many key metabolic enzymes which
use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. The PYR and PP domains have a
common fold, but do not share strong sequence
conservation. The PP domain is not included in this
sub-family. Most TPP-dependent enzymes have the PYR and
PP domains on the same subunit although these domains
can be alternatively arranged in the primary structure.
TPP-dependent enzymes are multisubunit proteins, the
smallest catalytic unit being a dimer-of-active sites.
Lactobacillus plantarum POX is a homotetramer
(dimer-of-homodimers), having two active sites per
homodimer lying between PYR and PP domains of different
subunits. POX decarboxylates pyruvate, producing
hydrogen peroxide and the energy-storage metabolite
acetylphosphate.
Length = 164
Score = 147 bits (374), Expect = 2e-41
Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARS 129
AD+IVE LE GV V+ PG + + +L I I RHE+ FAA A+
Sbjct: 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKL 60
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY 189
+G GVCL SSGPG +++ GL DA D P+LAI GQV LGTD FQE+ ++ + +
Sbjct: 61 TGKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKD 120
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231
+ +N V + +P ++ A A + R G ++ +P DVQ
Sbjct: 121 VAVYNETVTSPEQLPELLDRAIRTAIAKR-GVAVLILPGDVQ 161
>gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate
oxidase (POX) subfamily, TPP-binding module; composed of
proteins similar to Lactobacillus plantarum POX, which
plays a key role in controlling acetate production under
aerobic conditions. POX decarboxylates pyruvate,
producing hydrogen peroxide and the energy-storage
metabolite acetylphosphate. It requires FAD in addition
to TPP and a divalent cation as cofactors.
Length = 178
Score = 136 bits (346), Expect = 2e-37
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 10/181 (5%)
Query: 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAA 493
I P+ LN+ D+ I + VG +WA + ++ + S +MG GLP A
Sbjct: 2 IHPERVAAELNKRAPDD-AIFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGA 60
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553
+ A +A P V+ + GDG F M + +L N+PV +++ NN LG +++E
Sbjct: 61 IAAKLAYPDRQVIALSGDGGFAMLMGDLITAVKYNLPVIVVVFNNSDLGF-IKWEQEVMG 119
Query: 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVM 613
L + PD K AEA GI RV ++ AA+ L GP ++DV+
Sbjct: 120 QPEFGVDLPN--------PDFAKIAEAMGIKGIRVEDPDELEAALDEALAADGPVVIDVV 171
Query: 614 V 614
Sbjct: 172 T 172
>gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and
metabolism].
Length = 617
Score = 147 bits (373), Expect = 2e-37
Identities = 146/586 (24%), Positives = 226/586 (38%), Gaps = 99/586 (16%)
Query: 84 GVTTVFAYPGGASIEIHQSLTRSNIRSILP----RHEQGGIFAAEGYARSSGTPGVCLVS 139
GV +F + G I ++L + +R LP +EQG AA YA+ + V+
Sbjct: 33 GVFAIFGH--GNVAGIGEALYQ--VRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRIYAVT 88
Query: 140 S--GPGVTNIMTGLMDAYSDSIPILAITG-------------QVSQKLLGT----DAFQE 180
S GPG N++T A+ + +P+L + G Q+ Q GT D F+
Sbjct: 89 SSIGPGAANMVTAAALAHVNRLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRP 148
Query: 181 IPVVEVTRYMTKHNYLVLDVDDIPR------IIKEAFFIATS-GRPGPVLIDIPVDVQLE 233
V+RY D I R + A + T GPV + + DVQ E
Sbjct: 149 -----VSRYF----------DRITRPEQLMSALPRAMRVMTDPADCGPVTLALCQDVQAE 193
Query: 234 LAVPNWNQPCKL--PSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEEL 289
++ P PDE L LI +K P++ GGG L S E L
Sbjct: 194 A----YDYPESFFEKRVWRIRRPPPDERELADAAALIKSAKKPLIVAGGGVLYSGAREAL 249
Query: 290 RKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNER 349
R F GIPV T G L L VG+ GT+ AN A E DL++ G R +
Sbjct: 250 RAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDF 309
Query: 350 MTSK--LEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMF 407
T L K +++++ + K + + ADA+ ++ L G+
Sbjct: 310 TTGSKALFKNPGV-KFLNLNVQPFDAY--KHDALPLVADARAGLEALSEALG----GYRT 362
Query: 408 DFSAWREELHEQKKKY------PFSYKTFGEEIPPQ-YAIQILNELTDDEETIISTGVGQ 460
W +E K + P + F +P Q I + D+ ++
Sbjct: 363 AA-GWTDERERLKAAWDAEADAPTAKNHFLNTLPTQTQVIGAVQRTISDDSVVVCAAGSL 421
Query: 461 ----HQMWAIQFYMYKRARQLLT---SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS 513
H++W RA T GF MG+ + +GA A P V + GDGS
Sbjct: 422 PGDLHKLW--------RAGVPGTYHLEYGFSCMGYEIAGGLGAKAAEPDREVYVMVGDGS 473
Query: 514 FIMNLQELAAIKAENIPVKILLINNQYLG-MNVEYEDRYFEANRANSF---LGDPLRKSE 569
++M ELA + ++L++N+ G +N R A SF L D + E
Sbjct: 474 YMMLNSELATSVMLGKKIIVVLLDNRGYGCIN-----RLQMATGGASFNNLLRDTDHEEE 528
Query: 570 IFP-DMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMV 614
I D AE+ G A +V +++ AA+ + ++ +
Sbjct: 529 ILQVDFAAHAESYGAKAYKVGTIEELEAALADAKASDRTTVIVIDT 574
>gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine
pyrophosphate-requiring enzymes [Carbohydrate transport
and metabolism / Coenzyme metabolism / General function
prediction only].
Length = 557
Score = 146 bits (370), Expect = 2e-37
Identities = 117/506 (23%), Positives = 206/506 (40%), Gaps = 73/506 (14%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARSSG 131
D + + L + G+ ++F PG ++ + + + +R + +E +AA+GYAR +G
Sbjct: 7 GDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNG 66
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITG------QVSQKL----LGT---DAF 178
+ + G G + + G+ +Y++ +P++ I G Q S L LG F
Sbjct: 67 I-SALVTTFGVGELSALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVF 125
Query: 179 QEI--PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAV 236
+ + +T N +I R+I+ A + PV I +P DV
Sbjct: 126 HRMSKEITCAQAMLTDIN---TAPREIDRVIRTA--LKQRR---PVYIGLPADVA----- 172
Query: 237 PNWNQPCKLPSC-ISSLPKEPD----ELALRQTLKLIVESKNPVLCVGGGCLNS---SEE 288
+ P + P + K D + +LI ++K PV+ + ++ +E
Sbjct: 173 ---DLPIEAPLTPLDLQLKTSDPEALSEVIDTIAELINKAKKPVI-LADALVSRFGLEKE 228
Query: 289 LRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMF-GTVYANY---AVNECDLLLAAGV 344
L+K + TG PV MG G+ DE +G++ G + AV DL+L GV
Sbjct: 229 LKKLINATGFPVATLPMGKGVI---DESHPNYLGVYNGKLSEPEVREAVESADLILTIGV 285
Query: 345 RFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVG 404
+ T A I+ I DS +I ++S+ K + ++ +
Sbjct: 286 LLTDFNTGGFTYQYKPANIIEIHPDSVKIKDAVFTNLSM----KDALQELAKKIDKRN-- 339
Query: 405 FMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIS-TGVGQHQM 463
SA + P Y E + ++ + + II+ TG
Sbjct: 340 ----LSAPPVAYP--ARTPPTPYPPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGA 393
Query: 464 WAIQFYMYKRAR---QLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQE 520
I+ K A Q L +GS+G+ LPAA+GAA+A P V+ GDGS + +QE
Sbjct: 394 LDIRLP--KGATFISQPL----WGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQE 447
Query: 521 LAAIKAENIPVKILLINNQYLGMNVE 546
++ + + I ++NN G +E
Sbjct: 448 ISTMIRWGLKPIIFVLNND--GYTIE 471
>gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated.
Length = 569
Score = 138 bits (351), Expect = 1e-34
Identities = 153/582 (26%), Positives = 248/582 (42%), Gaps = 87/582 (14%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTR----SNIRSILPRHEQ--GGIFAAEG 125
G ++++AL+ G+ T++ G I I L R IR I RHEQ G AA G
Sbjct: 12 GFHLVIDALKLNGIDTIYGVVG---IPI-TDLARLAQAEGIRYIGFRHEQSAGNAAAAAG 67
Query: 126 YARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL--LGTDAFQEIPV 183
+ + PGVCL S PG N +T L +A ++ P++ I+G +++ L ++E+
Sbjct: 68 FL--TQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQ 125
Query: 184 VEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDV----------QLE 233
+ + K + V +DI + A A SGRPG V +D+P V
Sbjct: 126 LNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLAQTMDADEALTS 185
Query: 234 LAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRK 291
L P +LP+ P+ A+ + L L+ ++K P++ +G G + E++R+
Sbjct: 186 LVKVVDPAPAQLPA--------PE--AVDRALDLLKKAKRPLIILGKGAAYAQADEQIRE 235
Query: 292 FVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT 351
FV TGIP +M GL P T + A+ D++L G R N +
Sbjct: 236 FVEKTGIPFLPMSMAKGLLPDTHPQS-------AAAARSLALANADVVLLVGARLN-WLL 287
Query: 352 S--KLEDFATRAKIVHIDIDSNEIGKVKLPDVSICA----DAKLVFNRMNMILESKGVGF 405
S K + + K + IDI+ EI + I A D V M +L
Sbjct: 288 SHGKGKTWGADKKFIQIDIEPQEIDS----NRPIAAPVVGDIGSV---MQALLAGLKQNT 340
Query: 406 MFDFSAWREELHEQKKK--YPFSYKTFGEEIPPQY--AIQILNELTDDEETIISTGVGQH 461
+ W + L E+K+K + K + P + A+ + ++ + I G +
Sbjct: 341 FKAPAEWLDALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKENPDIYLVNEGAN 400
Query: 462 QMWAIQFY-----MYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM 516
+ MYK R L +G MG G+ A+ AAV G VV I+GD +F
Sbjct: 401 ---TLDLARNIIDMYK-PRHRLDCGTWGVMGIGMGYAIAAAVET-GKPVVAIEGDSAFGF 455
Query: 517 NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDP----LRKSEIFP 572
+ E+ I N+PV +++ NN Y R + N + + GDP L +
Sbjct: 456 SGMEVETICRYNLPVTVVIFNN-----GGIY--RGDDVNLSGA--GDPSPTVLVHHARYD 506
Query: 573 DMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMV 614
M EA G VT ++R A+ + + P L++V++
Sbjct: 507 KM---MEAFGGVGYNVTTPDELRHALTEAIASGKPTLINVVI 545
>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 137 bits (348), Expect = 2e-34
Identities = 129/572 (22%), Positives = 214/572 (37%), Gaps = 75/572 (13%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSI-LPR-----HEQGGIFAA 123
A++ +E L+ GV +F G I ++ R+ LP HE I A
Sbjct: 7 YTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMA 66
Query: 124 EGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQ--VSQK-LLGT----- 175
GYA +G P +V G N + G+ +A IP+L G+ +++ LG+
Sbjct: 67 HGYALVTGKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRI 126
Query: 176 ----DAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231
+ + +V R K +Y + D I ++ A IA S GPV + +P +V
Sbjct: 127 HWTQEMRDQGGLV---REYVKWDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREV- 182
Query: 232 LELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCV--GGGCLNSSEEL 289
L VP + P PD + + +++ ++ PV+ G L
Sbjct: 183 LAEEVPEVKADAGRQMAPA--PPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFASL 240
Query: 290 RKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLA--AGVRFN 347
R+ IPV G + +D + + E DL+L + V +
Sbjct: 241 RRLAEELAIPV-VEYAGEVVNYPSDH------PLHLGPDPRADLAEADLVLVVDSDVPWI 293
Query: 348 ERMTSKLEDFATRAKIVHIDIDSNEIGKVKLP------DVSICADAKLVFNRMNMILESK 401
K A+++ ID+D K ++P D+ I AD +++ L+S
Sbjct: 294 P----KKIRPDADARVIQIDVDPL---KSRIPLWGFPCDLCIQADTSTALDQLEERLKSL 346
Query: 402 GVGFMFDFSAWREELHEQ------KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIS 455
R + E K+ I P Y L E+ D+ + I++
Sbjct: 347 ASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPAYLSYCLGEVADEYDAIVT 406
Query: 456 T-GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSF 514
Q + G +G+ L AA+GA +A P +V+ GDGSF
Sbjct: 407 EYPFVPRQARLNKP------GSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSF 460
Query: 515 IMNLQE--LAAIKAENIPVKILLINNQYLG------MNVEYEDRYFEANRANSFLGDPLR 566
I + E + +PV +++ NN + V Y + Y A R +F G
Sbjct: 461 IFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEV-YPEGY--AARKGTFPGTDFD 517
Query: 567 KSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
PD K AEA G RV ++++ A+
Sbjct: 518 PR---PDFAKIAEAFGGYGERVEDPEELKGAL 546
>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of
thiamine pyrophosphate (TPP)-dependent enzymes.
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR)
binding domain; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. A polar interaction between the
conserved glutamate of the PYR domain and the N1' of the
TPP aminopyrimidine ring is shared by most TPP-dependent
enzymes, and participates in the activation of TPP. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this group. Most TPP-dependent enzymes have
the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. In the case of 2-oxoisovalerate
dehydrogenase (2OXO), sulfopyruvate decarboxylase
(ComDE), and the E1 component of human pyruvate
dehydrogenase complex (E1- PDHc) the PYR and PP domains
appear on different subunits. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites. For many of these enzymes the
active sites lie between PP and PYR domains on different
subunits. However, for the homodimeric enzymes
1-deoxy-D-xylulose 5-phosphate synthase (DXS) and
Desulfovibrio africanus pyruvate:ferredoxin
oxidoreductase (PFOR), each active site lies at the
interface of the PYR and PP domains from the same
subunit.
Length = 154
Score = 120 bits (304), Expect = 5e-32
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 3/156 (1%)
Query: 74 DIIVEALERQGVTTVFAYPGGASIEI-HQSLTRSNIRSILPRHEQGGIFAAEGYARSSGT 132
E L GV VF YPG + HE G AA GYAR+ G
Sbjct: 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGG- 59
Query: 133 PGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTK 192
P V +V+SG G+ N + GL DA ++ +P++ + G FQ + + + R + +
Sbjct: 60 PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPE 119
Query: 193 HNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228
N ++P I A A + GPV++ +P
Sbjct: 120 ANISSPSPAELPAGIDHAIRTAYAS-QGPVVVRLPR 154
>gnl|CDD|238968 cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) family, Acetolactate
synthase (ALS) subfamily, TPP-binding module; composed
of proteins similar to Klebsiella pneumoniae ALS, a
catabolic enzyme required for butanediol fermentation.
ALS catalyzes the conversion of 2 molecules of pyruvate
to acetolactate and carbon dioxide. ALS does not contain
FAD, and requires TPP and a divalent metal cation for
activity.
Length = 177
Score = 111 bits (279), Expect = 3e-28
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 12/184 (6%)
Query: 436 PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMG 495
PQ + L + D++ ++ VG H++W ++Y L S+G +MG LP A+G
Sbjct: 1 PQRIVHDLRAVMGDDDIVLLD-VGAHKIWMARYYRTYAPNTCLISNGLATMGVALPGAIG 59
Query: 496 AAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM-NVEYEDRYFEA 554
A + P VV + GDG F+MN QEL IP+ +L+ N+ G+ + E Y
Sbjct: 60 AKLVYPDRKVVAVSGDGGFMMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRD 119
Query: 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMV 614
+ + G+ PD +K+AE+ G R+ D+ ++ L G +++D V
Sbjct: 120 SGVD--FGN--------PDFVKYAESFGAKGYRIESADDLLPVLERALAADGVHVIDCPV 169
Query: 615 SYQE 618
Y E
Sbjct: 170 DYSE 173
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC
subfamily, TPP-binding module; composed of proteins
similar to Pseudomonas putida benzoylformate
decarboxylase (BFDC). P. putida BFDC plays a role in the
mandelate pathway, catalyzing the conversion of
benzoylformate to benzaldehyde and carbon dioxide. This
enzyme is dependent on TPP and a divalent metal cation
as cofactors.
Length = 178
Score = 106 bits (266), Expect = 2e-26
Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 13/186 (6%)
Query: 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAA 493
+ P+Y L ++ I+ V Q R T G G +G+GLPAA
Sbjct: 1 LTPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQL-PLTRPGSYFTLRG-GGLGWGLPAA 58
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ-YLGMNVEYEDRYF 552
+GAA+ANP VV I GDGSF+ +Q L +PV ++++NN+ Y + +
Sbjct: 59 VGAALANPDRKVVAIIGDGSFMYTIQALWTAARYGLPVTVVILNNRGYGALRSFLKRVGP 118
Query: 553 EANRANSF----LGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPY 608
E N+ L DP D A+A G+ A RV +++ A++ L GP
Sbjct: 119 EGPGENAPDGLDLLDPG------IDFAAIAKAFGVEAERVETPEELDEALREALAEGGPA 172
Query: 609 LLDVMV 614
L++V+V
Sbjct: 173 LIEVVV 178
>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family,
BZL_OCoD_HPCL subfamily, TPP-binding module; composed of
proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA
decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase
(2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves
the acyloin linkage of benzoin producing 2 molecules of
benzaldehyde and enabling the Pseudomonas to grow on
benzoin as the sole carbon and energy source. OCoD has a
role in the detoxification of oxalate, catalyzing the
decarboxylation of oxalyl-CoA to formate. 2-HPCL is a
peroxisomal enzyme which plays a role in the
alpha-oxidation of 3-methyl-branched fatty acids,
catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA
into formyl-CoA and a 2-methyl-branched fatty aldehyde.
All these enzymes depend on Mg2+ and TPP for activity.
Length = 172
Score = 89.5 bits (223), Expect = 9e-21
Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 8/180 (4%)
Query: 436 PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMG 495
P + L E D+ I+S G G WA ++ R L + FG++G GL A+
Sbjct: 1 PYRVLHELQEALPDDAIIVSDG-GNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIA 59
Query: 496 AAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEAN 555
AA+A P VV ++GDG+F + EL N+P+ +++ NN ++ + +
Sbjct: 60 AALARPDKRVVLVEGDGAFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLG 119
Query: 556 RANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVS 615
+ L R AEA G VT ++++ A++ L + P L++V++
Sbjct: 120 LPVTTLLPDTRYD-------LVAEAFGGKGELVTTPEELKPALKRALASGKPALINVIID 172
>gnl|CDD|238964 cd02006, TPP_Gcl, Thiamine pyrophosphate (TPP) family, Gcl
subfamily, TPP-binding module; composed of proteins
similar to Escherichia coli glyoxylate carboligase
(Gcl). E. coli glyoxylate carboligase, plays a key role
in glyoxylate metabolism where it catalyzes the
condensation of two molecules of glyoxylate to give
tartronic semialdehyde and carbon dioxide. This enzyme
requires TPP, magnesium ion and FAD as cofactors.
Length = 202
Score = 79.6 bits (196), Expect = 5e-17
Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 9/188 (4%)
Query: 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAA 493
I PQ + +N+ + ++T +G Q+ Q + R + G +G+ +PAA
Sbjct: 8 IKPQRVYEEMNKAFGRDVRYVTT-IGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAA 66
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553
+G A A+P VV + GD F ++ELA IP +L+NN YLG+ + R F+
Sbjct: 67 LGVAAADPDRQVVALSGDYDFQFMIEELAVGAQHRIPYIHVLVNNAYLGL-IRQAQRAFD 125
Query: 554 ANRANSFLGDPLRKSEIFP---DMLKFAEACGIPAARVTKKKDVRAAIQ----LMLETPG 606
+ + + + SE+ D +K AE G A RVTK +++ AA + LM E
Sbjct: 126 MDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRV 185
Query: 607 PYLLDVMV 614
P +++ ++
Sbjct: 186 PVVVEAIL 193
>gnl|CDD|132435 TIGR03394, indol_phenyl_DC, indolepyruvate/phenylpyruvate
decarboxylase, Azospirillum family. A family of closely
related, thiamine pyrophosphate-dependent enzymes
includes indolepyruvate decarboxylase (EC 4.1.1.74),
phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate
decarboxylase (EC 4.1.1.1), branched-chain
alpha-ketoacid decarboxylase, etc.. Members of this
group of homologs may overlap in specificity. This model
represents a clade that includes a Azospirillum
brasilense member active as both phenylpyruvate
decarboxylase and indolepyruvate decarboxylase.
Length = 535
Score = 83.4 bits (206), Expect = 8e-17
Identities = 134/575 (23%), Positives = 223/575 (38%), Gaps = 90/575 (15%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILP----RHEQGGIFAAEGYAR 128
A+ ++ AL+ +G +F PG ++ + + + ILP HE FAA+ AR
Sbjct: 3 AEALLRALKDRGAQEMFGIPGDFALPFFKVIEET---GILPLHTLSHEPAVGFAADAAAR 59
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQ--VSQKLLGTDAFQEIPVVEV 186
GT GV V+ G G N++ + AY++ P++ I+G ++ G + ++
Sbjct: 60 YRGTLGVAAVTYGAGAFNMVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDS 119
Query: 187 TRYMTKH---NYLVLD-----VDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPN 238
+ K + VLD +I R++ A S PV ++IP D+
Sbjct: 120 QFQVFKEVTCDQAVLDDPATAPAEIARVLGSA--RELSR---PVYLEIPRDMV------- 167
Query: 239 WNQPCKLPSCISSLPKEPDELA--LRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLT 296
N + + P + D L + L + + +PV+ V E+R++ GL
Sbjct: 168 -NAEVEPVPDDPAWPVDRDALDACADEVLARMRSATSPVMMVC-------VEVRRY-GLE 218
Query: 297 ----------GIPVTCTTMGLGLFPCTDELCL-RMVGMFGTVYANYAVNECDLLLAAGVR 345
G+PV T MG GL L +G+ G + V E D LL GV
Sbjct: 219 AKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVI 278
Query: 346 FNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGF 405
++ + + + +H + +G D+ + A LV + +L
Sbjct: 279 LSDTNFAVSQRKIDLRRTIHAFDRAVTLGYHVYADIPL---AGLV----DALLALLCGLP 331
Query: 406 MFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWA 465
D + + H YP + E I P + +N+ GQ + A
Sbjct: 332 PSDRTTRGKGPH----AYPRGLQADAEPIAPMDIARAVNDRFARH--------GQMPLAA 379
Query: 466 ----IQFYMYKRARQLLTSSGF-GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQE 520
F L + G+ MGFG+PA +GA + I+ + GDG+F M E
Sbjct: 380 DIGDCLFTAMDMDDAGLMAPGYYAGMGFGVPAGIGAQCTSGKRILTLV-GDGAFQMTGWE 438
Query: 521 LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEA 580
L + I ++L NN M R F+ A + L D F DM A
Sbjct: 439 LGNCRRLGIDPIVILFNNASWEML-----RVFQPESAFNDLDD-----WRFADM---AAG 485
Query: 581 CGIPAARVTKKKDVRAAIQLMLETPGPY-LLDVMV 614
G RV + ++ AA+ T G + L++ M+
Sbjct: 486 MGGDGVRVRTRAELAAALDKAFATRGRFQLIEAML 520
>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed.
Length = 530
Score = 83.1 bits (206), Expect = 1e-16
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 27/218 (12%)
Query: 74 DIIVEALERQGVTTVFAYPGGASIEIHQSLTR---SNIRSILPRHEQGGIFAAEGYARSS 130
D ++ L R G+TTVF PG S E+ R + R +L E + A+GYA+++
Sbjct: 16 DATIDLLRRFGITTVFGNPG--STEL--PFLRDFPDDFRYVLGLQEAVVVGMADGYAQAT 71
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAF------QEIPVV 184
G + S GV N M L A+ + P++ GQ ++ +L + F E+P
Sbjct: 72 GNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAELP-- 129
Query: 185 EVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCK 244
+ K + +D+P I A+ IA GPV + IP D +W+QP +
Sbjct: 130 ---KPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD--------DWDQPAE 178
Query: 245 -LPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGG 281
LP+ S PD AL + + ++ P L VG
Sbjct: 179 PLPARTVSSAVRPDPAALARLGDALDAARRPALVVGPA 216
Score = 67.3 bits (165), Expect = 1e-11
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 26/192 (13%)
Query: 431 GEEIPPQYAIQILNELTDD-----EETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGS 485
GE + + +Q L L EE + M M ++ +SG
Sbjct: 356 GEPLSVAFVLQTLAALRPADAIVVEEAPSTRPA----MQE-HLPMRRQGSFYTMASG--G 408
Query: 486 MGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ-YLGMN 544
+G+GLPAA+G A+A PG V+ + GDGS + ++Q L + +PV +++NN Y +
Sbjct: 409 LGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFVILNNGRYGAL- 467
Query: 545 VEYEDRYFEANRANSFLGDPLRKSEIFP--DMLKFAEACGIPAARVTKKKDVRAAIQLML 602
R+F A F + ++ P D + A G A RV+ ++ A+ L
Sbjct: 468 -----RWF----APVFGVRDVPGLDL-PGLDFVALARGYGCEAVRVSDAAELADALARAL 517
Query: 603 ETPGPYLLDVMV 614
GP L++V V
Sbjct: 518 AADGPVLVEVEV 529
>gnl|CDD|132434 TIGR03393, indolpyr_decarb, indolepyruvate decarboxylase, Erwinia
family. A family of closely related, thiamine
pyrophosphate-dependent enzymes includes indolepyruvate
decarboxylase (EC 4.1.1.74), phenylpyruvate
decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC
4.1.1.1), branched-chain alpha-ketoacid decarboxylase,
etc.. Members of this group of homologs may overlap in
specificity. Within the larger family, this model
represents a clade of bacterial indolepyruvate
decarboxylases, part of a pathway for biosynthesis of
the plant hormone indole-3-acetic acid. Typically, these
species interact with plants, as pathogens or as
beneficial, root-associated bacteria [Central
intermediary metabolism, Other].
Length = 539
Score = 82.3 bits (203), Expect = 2e-16
Identities = 114/514 (22%), Positives = 205/514 (39%), Gaps = 78/514 (15%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSG 131
D +++ L G+ +F PG +++ + S +I + +E +AA+GYAR G
Sbjct: 4 GDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKG 63
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT----------GQVSQKLLGTDAFQEI 181
L + G G + + G+ +Y++ +P++ I G++ LG F+
Sbjct: 64 A-AALLTTFGVGELSAINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHF 122
Query: 182 -----PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAV 236
V +T+ N +I R+I A RPG + +PVDV +
Sbjct: 123 YRMAAEVTVAQAVLTEQNATA----EIDRVITTAL---RERRPG--YLMLPVDVAAKAVT 173
Query: 237 P-----NWNQPCKLPSCISSL-PKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELR 290
P ++P S + + ++LA+ + + L+ + L + G L+
Sbjct: 174 PPVNPLVTHKPAHADSALRAFRDAAENKLAMAKRVSLLAD----FLALRHG---LKHALQ 226
Query: 291 KFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYA--------VNECDLLLAA 342
K+V +P MG G+ DE + G +GT Y+ A + D ++
Sbjct: 227 KWVKEVPMPHATLLMGKGIL---DE---QQAGFYGT-YSGSASTGAVKEAIEGADAVICV 279
Query: 343 GVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKG 402
GVRF + +T+ T + + + + +G V + + DA + +
Sbjct: 280 GVRFTDTITAGFTHQLTPEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVEL-----CEH 333
Query: 403 VGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462
G M+ S + + S + F + + Q ++ D II G
Sbjct: 334 AGLMWSSSGAIPFPQPDESRSALSQENFWQTL--QTFLR-----PGD---IILADQGTSA 383
Query: 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELA 522
A + + +GS+G+ LPAA GA A P V+ + GDGS + +QEL
Sbjct: 384 FGAADLRLPADV-NFIVQPLWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELG 442
Query: 523 AIKAENIPVKILLINNQYLGMNVEY-----EDRY 551
++ + IL++NN+ G VE E RY
Sbjct: 443 SMLRDKQHPIILVLNNE--GYTVERAIHGAEQRY 474
>gnl|CDD|238971 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family,
Xsc-like subfamily, TPP-binding module; composed of
proteins similar to Alcaligenes defragrans
sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a
key role in the degradation of taurine, catalyzing the
desulfonation of 2-sulfoacetaldehyde into sulfite and
acetyl phosphate. This enzyme requires TPP and divalent
metal ions for activity.
Length = 196
Score = 76.4 bits (188), Expect = 6e-16
Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 441 QILNEL--TDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAV 498
Q+L EL E+ I+ST +G A + +++ R + FG+ G+ LPA +GA
Sbjct: 8 QVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKA 67
Query: 499 ANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRAN 558
A P VV I GDG++ M++ E+ +PV ++ N+ G + + ++ N
Sbjct: 68 AAPDRPVVAIAGDGAWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYN----N 123
Query: 559 SFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQ 599
F+G L K AEACG V K +DV A+Q
Sbjct: 124 RFVGTELES----ESFAKIAEACGAKGITVDKPEDVGPALQ 160
>gnl|CDD|238961 cd02003, TPP_IolD, Thiamine pyrophosphate (TPP) family, IolD
subfamily, TPP-binding module; composed of proteins
similar to Rhizobium leguminosarum bv. viciae IolD. IolD
plays an important role in myo-inositol catabolism.
Length = 205
Score = 76.2 bits (188), Expect = 7e-16
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 36/194 (18%)
Query: 439 AIQILNELTDDEETIISTGVGQ----HQMWAIQFYMYKRARQLLT---SSGFGSMGFGLP 491
+ LNE D++ +I+ H++W RAR G+ MG+ +
Sbjct: 4 VLGALNEAIGDDDVVINAAGSLPGDLHKLW--------RARTPGGYHLEYGYSCMGYEIA 55
Query: 492 AAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN----------QYL 541
A +GA +A P V + GDGS++M E+ E + + I+L +N +
Sbjct: 56 AGLGAKLAKPDREVYVLVGDGSYLMLHSEIVTAVQEGLKIIIVLFDNHGFGCINNLQEST 115
Query: 542 GM---NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
G E+ DR E+ + + G L D A + G +V ++++AA+
Sbjct: 116 GSGSFGTEFRDRDQESGQLD---GALLPV-----DFAANARSLGARVEKVKTIEELKAAL 167
Query: 599 QLMLETPGPYLLDV 612
+ ++ +
Sbjct: 168 AKAKASDRTTVIVI 181
>gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family,
PDC_IPDC subfamily, TPP-binding module; composed of
proteins similar to pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC, a key enzyme
in alcoholic fermentation, catalyzes the conversion of
pyruvate to acetaldehyde and CO2. It is able to utilize
other 2-oxo acids as substrates. In plants and various
plant-associated bacteria, IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway, a
tryptophan-dependent biosynthetic route to
indole-3-acetaldehyde (IAA). IPDC catalyzes the
decarboxylation of IPA to IAA. Both PDC and IPDC depend
on TPP and Mg2+ as cofactors.
Length = 183
Score = 73.7 bits (182), Expect = 3e-15
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 31/152 (20%)
Query: 476 QLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILL 535
+ ++ +GS+G+ +PAA+GAA+A P V+ + GDGSF M +QEL+ + + I L
Sbjct: 42 RFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQELSTMIRYGLNPIIFL 101
Query: 536 INNQ-YL------GMNVEYED----RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP 584
INN Y G Y D Y F G G
Sbjct: 102 INNDGYTIERAIHGPEASYNDIANWNY--TKLPEVFGGGG-----------------GGL 142
Query: 585 AARVTKKKDVRAAIQLMLETP-GPYLLDVMVS 615
+ RV + ++ A++ L L++V++
Sbjct: 143 SFRVKTEGELDEALKDALFNRDKLSLIEVILP 174
>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 78.0 bits (193), Expect = 4e-15
Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 24/149 (16%)
Query: 477 LLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536
LT +G G++G GLP A GAAVA P V+ + GDGS + +Q L EN+ V ++
Sbjct: 379 WLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVTTVIF 437
Query: 537 NN-QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDML----------KFAEACGIPA 585
N Y + E A G+P ++ DML AE G+PA
Sbjct: 438 ANRAYAILRGEL---------ARVGAGNPGPRA---LDMLDLDDPDLDWVALAEGMGVPA 485
Query: 586 ARVTKKKDVRAAIQLMLETPGPYLLDVMV 614
RVT ++ A+ L PGP+L++ +V
Sbjct: 486 RRVTTAEEFADALAAALAEPGPHLIEAVV 514
Score = 51.0 bits (123), Expect = 1e-06
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIH--QSLTR-SNIRSILPRHEQGGIFAAEGYAR 128
GA+ +V L GV FA PG + E+H +L R +R +L E AA+GYAR
Sbjct: 3 GAESLVRTLVDGGVDVCFANPGTS--EMHFVAALDRVPGMRCVLGLFEGVATGAADGYAR 60
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQ 167
+G P L+ GPG+ N + L +A PI+ I G
Sbjct: 61 MAGKPAATLLHLGPGLANGLANLHNARRARTPIVNIVGD 99
>gnl|CDD|132920 cd07037, TPP_PYR_MenD, Pyrimidine (PYR) binding domain of
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-
carboxylate synthase (MenD) and related proteins.
Thiamine pyrophosphate (TPP family), pyrimidine (PYR)
binding domain of
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-
carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this sub-family. Most TPP-dependent enzymes
have the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites. Escherichia coli MenD (EcMenD)
is a homotetramer (dimer-of-homodimers), having two
active sites per homodimer lying between PYR and PP
domains of different subunits. EcMenD catalyzes a
Stetter-like conjugate addition of alpha-ketoglutarate
to isochorismate, leading to the formation of SEPHCHC
and carbon dioxide, this addition is the first committed
step in the biosynthesis of vitamin K2 (menaquinone).
Length = 162
Score = 65.2 bits (160), Expect = 2e-12
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 13/163 (7%)
Query: 75 IIVEALERQGVTTVFAYPGGAS----IEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS 130
+VE L+R GV V PG S + + + + E+ F A G A++S
Sbjct: 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEH-PEFRLHVRV--DERSAAFFALGLAKAS 58
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G P + +SG V N++ +++AY +P+L +T +L GT A Q I V +
Sbjct: 59 GRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDY 118
Query: 191 TKHNYLV------LDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227
+ + + D+ + R+ A A S PGPV +++P
Sbjct: 119 VRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161
>gnl|CDD|139002 PRK12474, PRK12474, hypothetical protein; Provisional.
Length = 518
Score = 64.5 bits (157), Expect = 9e-11
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ-YLG 542
GS+G GLP A GAAVA P VV GDG +Q L + EN+ V +++ N+ Y
Sbjct: 389 GSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMARENLDVTVVIFANRSYAI 448
Query: 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML 602
+N E + + N+ L E+ + +K AE G+ A+R T ++ A +
Sbjct: 449 LNGELQRVGAQGAGRNALSMLDLHNPEL--NWMKIAEGLGVEASRATTAEEFSAQYAAAM 506
Query: 603 ETPGPYLLDVMV 614
GP L++ M+
Sbjct: 507 AQRGPRLIEAMI 518
Score = 60.7 bits (147), Expect = 1e-09
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 9/214 (4%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYARSS 130
GAD +V+ L GV FA PG + + +L R +R +L E AA+GY R +
Sbjct: 7 GADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIA 66
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G P V L+ GPG+ N + L +A + PI+ I G + + L DA + R +
Sbjct: 67 GKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPV 126
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
++ + + + A A S G + +P DV WN+ +
Sbjct: 127 SRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVA-------WNEAAYAAQPLR 179
Query: 251 SLPKEP-DELALRQTLKLIVESKNPVLCVGGGCL 283
+ P + + L+ K L + G L
Sbjct: 180 GIGPAPVAAETVERIAALLRNGKKSALLLRGSAL 213
>gnl|CDD|232855 TIGR00173, menD,
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylic-acid synthase. MenD was thought until
recently to act as SHCHC synthase, but has recently been
shown to act instead as SEPHCHC synthase. Conversion of
SEPHCHC into SHCHC and pyruvate may occur spontaneously
but is catalyzed efficiently, at least in some
organisms, by MenH (see TIGR03695). 2-oxoglutarate
decarboxylase/SHCHC synthase (menD) is a thiamine
pyrophosphate enzyme involved in menaquinone
biosynthesis [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 430
Score = 63.4 bits (155), Expect = 1e-10
Identities = 76/324 (23%), Positives = 122/324 (37%), Gaps = 51/324 (15%)
Query: 75 IIVEALERQGVTTVFAYPGGAS----IEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS 130
++VE L R GV V PG S + + + R + + E+ F A G A++S
Sbjct: 4 VLVEELVRLGVRHVVISPGSRSTPLALALAE-HPRLRVHVHI--DERSAGFFALGLAKAS 60
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G P + +SG V N++ +++AY +P++ +T +L G A Q I +
Sbjct: 61 GRPVAVVCTSGTAVANLLPAVIEAYYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSY 120
Query: 191 TKHNY-LVLDVDDIP-----RIIKEAFFIATSGRPGPVLIDIP-----VDVQLELAVPNW 239
+ + L L D P + A A PGPV I++P L + W
Sbjct: 121 VRWSVDLPLPEADEPLRYLRSTVDRAVAQAQGAPPGPVHINVPFREPLYPDPLLQPLQPW 180
Query: 240 NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS-SEELRKFVGLTGI 298
+P+ +S+ P D +L + ++K ++ G +E L G
Sbjct: 181 -LRSGVPT-VSTGPPVLDPESLDDLWDRLRQAKRGLIIAGPLAGAEDAEALAALAEALGW 238
Query: 299 PVTCTTMGLGLFPCTDELC-LRMVGMFGTVYANYAVNECDLLLAAG-----------VRF 346
P+ D L LR G V +Y DLLLA +RF
Sbjct: 239 PLLA-----------DPLSGLR-GGPHPLVIDHY-----DLLLANAELREELQPDLVIRF 281
Query: 347 NERMTSK-LEDFATRAKIVHIDID 369
SK L + R + +D
Sbjct: 282 GGPPVSKRLRQWLARQPAEYWVVD 305
>gnl|CDD|239469 cd03372, TPP_ComE, Thiamine pyrophosphate (TPP) family, ComE
subfamily, TPP-binding module; composed of proteins
similar to Methanococcus jannaschii sulfopyruvate
decarboxylase beta subunit (ComE). M. jannaschii
sulfopyruvate decarboxylase (ComDE) is a dodecamer of
six alpha (D) subunits and six (E) beta subunits, which
catalyzes the decarboxylation of sulfopyruvic acid to
sulfoacetaldehyde in the coenzyme M pathway. ComDE
requires TPP and divalent metal cation cofactors.
Length = 179
Score = 56.9 bits (138), Expect = 2e-09
Identities = 52/199 (26%), Positives = 75/199 (37%), Gaps = 45/199 (22%)
Query: 439 AIQILNELTDDEETIISTGVGQHQMWAIQ-----FYMYKRARQLLTSSGFGSMGFGLPAA 493
AI+ L DE + + G +++A FYM GSMG
Sbjct: 4 AIKTLIADLKDELVVSNIGFPSKELYAAGDRPLNFYM------------LGSMGLASSIG 51
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI--NNQY--LGMNVEYED 549
+G A+A P ++V IDGDGS +MNL LA I AE I+++ N Y G +
Sbjct: 52 LGLALAQPRKVIV-IDGDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAG 110
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLM-LETPGPY 608
+ D+ A+ACG+ V A + + GP
Sbjct: 111 KKT--------------------DLEAVAKACGLD--NVATVASEEAFEKAVEQALDGPS 148
Query: 609 LLDVMVSYQEHVVPMIPYD 627
+ V + VP IP D
Sbjct: 149 FIHVKIKPGNTDVPNIPRD 167
>gnl|CDD|132340 TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarboxylase. This
family consists of examples of phosphonopyruvate an
decarboxylase enzyme that produces phosphonoacetaldehyde
(Pald), the second step in the biosynthesis
phosphonate-containing compounds. Since the preceding
enzymate step, PEP phosphomutase (AepX, TIGR02320)
favors the substrate PEP energetically, the
decarboxylase is required to drive the reaction in the
direction of phosphonate production. Pald is a precursor
of natural products including antibiotics like bialaphos
and phosphonothricin in Streptomyces species,
phosphonate-modified molecules such as the
polysaccharide B of Bacteroides fragilis, the
phosphonolipids of Tetrahymena pyroformis, the
glycosylinositolphospholipids of Trypanosoma cruzi. This
gene generally occurs in prokaryotic organisms adjacent
to the gene for AepX. Most often an aminotansferase
(aepZ) is also present which leads to the production of
the most common phosphonate compound,
2-aminoethylphosphonate (AEP).
Length = 361
Score = 59.7 bits (145), Expect = 2e-09
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 27/182 (14%)
Query: 439 AIQILNELTDDEETIIS-TGVGQHQMWAI-QFYMYKRARQLLTSSGFGSMGFGLPAAMGA 496
AI + + D I+S TG +++ + AR LT GSMG A+G
Sbjct: 177 AIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARDFLT---VGSMGHASQIALGL 233
Query: 497 AVANPGAIVVDIDGDGSFIMNLQELAAIKAENIP--VKILLINNQYLGMNVEYEDRYFEA 554
A+A P VV +DGDG+ +M++ LA I + + +L N +
Sbjct: 234 ALARPDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNGAH-------------- 279
Query: 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-VTKKKDVRAAIQLMLETPGPYLLDVM 613
+S G P + D + A+ACG V+ +++ A+ GP L++V
Sbjct: 280 ---DSVGGQPTVSQHL--DFAQIAKACGYAKVYEVSTLEELETALTAASSANGPRLIEVK 334
Query: 614 VS 615
V
Sbjct: 335 VR 336
>gnl|CDD|234373 TIGR03846, sulfopy_beta, sulfopyruvate decarboxylase, beta subunit.
Nearly every member of this protein family is the beta
subunit, or else the C-terminal region, of sulfopyruvate
decarboxylase, in an archaeal species capable of
coenzyme M biosynthesis. However, the enzyme also occurs
in Roseovarius nubinhibens ISM in a degradative pathway,
where the resulting sulfoacetaldehyde is desulfonated to
acetyl phosphate, then converted to acetyl-CoA (see
PMID:19581363).
Length = 181
Score = 56.2 bits (136), Expect = 4e-09
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 36/195 (18%)
Query: 439 AIQILNELTDDEETIISTGVGQHQMWAIQ-----FYMYKRARQLLTSSGFGSMGFGLPAA 493
AI+ + +DE + + GV +++AI+ FYM GSMG
Sbjct: 4 AIRAIASYLEDELVVSNIGVPSKELYAIRDRPLNFYM------------LGSMGLASSIG 51
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553
+G A+A ++V IDGDGS +MNL L I AE+ IL+I +
Sbjct: 52 LGLALATDRTVIV-IDGDGSLLMNLGVLPTIAAESPKNLILVILD--------------- 95
Query: 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIP-AARVTKKKDVRAAIQLMLETPGPYLLDV 612
N A G+ + D+ A+A GI +V ++++R A++ L GP + V
Sbjct: 96 -NGAYGSTGNQPTPASRRTDLELVAKAAGIRNVEKVADEEELRDALK-ALAMKGPTFIHV 153
Query: 613 MVSYQEHVVPMIPYD 627
V VP IP
Sbjct: 154 KVKPGNAKVPNIPLS 168
>gnl|CDD|239468 cd03371, TPP_PpyrDC, Thiamine pyrophosphate (TPP) family, PpyrDC
subfamily, TPP-binding module; composed of proteins
similar to phosphonopyruvate decarboxylase (PpyrDC)
proteins. PpyrDC is a homotrimeric enzyme which
functions in the biosynthesis of C-P compounds such as
bialaphos tripeptide in Streptomyces hygroscopicus.
These proteins require TPP and divalent metal cation
cofactors.
Length = 188
Score = 55.8 bits (135), Expect = 5e-09
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 27/182 (14%)
Query: 439 AIQILNELTDDEETIIST-GVGQHQMWAIQ-FYMYKRARQLLTSSGFGSMGFGLPAAMGA 496
AI+I+ ++ST G+ +++ ++ A+ LT GSMG A+G
Sbjct: 4 AIEIVLSRAPATAAVVSTTGMTSRELFELRDRPGGGHAQDFLTV---GSMGHASQIALGI 60
Query: 497 AVANPGAIVVDIDGDGSFIMNLQELAAIKAENIP--VKILLINNQYLGMNVEYEDRYFEA 554
A+A P VV IDGDG+ +M++ LA I + I+L N +
Sbjct: 61 ALARPDRKVVCIDGDGAALMHMGGLATIGGLAPANLIHIVLNNGAH-------------- 106
Query: 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-VTKKKDVRAAIQLMLETPGPYLLDVM 613
+S G P ++ + A+ACG A V +++ AA+ L GP ++V
Sbjct: 107 ---DSVGGQPTVSFDV--SLPAIAKACGYRAVYEVPSLEELVAALAKALAADGPAFIEVK 161
Query: 614 VS 615
V
Sbjct: 162 VR 163
>gnl|CDD|132921 cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) binding domain of
pyruvate decarboxylase (PDC), indolepyruvate
decarboxylase (IPDC) and related proteins. Thiamine
pyrophosphate (TPP family), pyrimidine (PYR) binding
domain of pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC) subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this sub-family. Most TPP-dependent enzymes
have the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites, for many the active sites lie
between PP and PYR domains on different subunits. PDC
catalyzes the conversion of pyruvate to acetaldehyde and
CO2 in alcoholic fermentation. IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway in plants and
various plant-associated bacteria, it catalyzes the
decarboxylation of IPA to IAA. Also belonging to this
group is Mycobacterium tuberculosis alpha-keto acid
decarboxylase (MtKDC) which participates in amino acid
degradation via the Ehrlich pathway, and Lactococcus
lactis branched-chain keto acid decarboxylase (KdcA) an
enzyme identified as being involved in cheese ripening,
which exhibits a very broad substrate range in the
decarboxylation and carboligation reactions.
Length = 162
Score = 55.2 bits (134), Expect = 6e-09
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARSSGTPG 134
++E L++ GV VF PG ++ + ++ +R + +E +AA+GYAR G G
Sbjct: 3 LLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKG-LG 61
Query: 135 VCLVSSGPGVTNIMTGLMDAYSDSIPILAITG 166
+ + G G + + G+ AY++ +P++ I G
Sbjct: 62 ALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93
>gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
magnesium ion binding / thiamin pyrophosphate binding.
Length = 1655
Score = 58.3 bits (141), Expect = 1e-08
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 13/181 (7%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGI-FAAEGYARSSG 131
A +I+E R G+T PG S + + + + + + ++ + F A GYAR S
Sbjct: 304 ASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSL 363
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVE----VT 187
P V + SSG V+N++ +++A D +P+L +T +L A Q I V
Sbjct: 364 KPAVVITSSGTAVSNLLPAVVEASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFV 423
Query: 188 RYMTKHNYLVLDVDDIP-RII----KEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
R+ L D IP R++ A ATS GPV I+ P L+ + NW
Sbjct: 424 RFFFN---LPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLDGSPTNWMSS 480
Query: 243 C 243
C
Sbjct: 481 C 481
>gnl|CDD|238959 cd02001, TPP_ComE_PpyrDC, Thiamine pyrophosphate (TPP) family, ComE
and PpyrDC subfamily, TPP-binding module; composed of
proteins similar to sulfopyruvate decarboxylase beta
subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr
decarboxylase). Methanococcus jannaschii sulfopyruvate
decarboxylase (ComDE) is a dodecamer of six alpha (D)
subunits and six (E) beta subunits which, catalyzes the
decarboxylation of sulfopyruvic acid to
sulfoacetaldehyde in the coenzyme M pathway. Ppyr
decarboxylase is a homotrimeric enzyme which functions
in the biosynthesis of C-P compounds such as bialaphos
tripeptide in Streptomyces hygroscopicus. Ppyr
decarboxylase and ComDE require TPP and divalent metal
cation cofactors.
Length = 157
Score = 53.3 bits (128), Expect = 3e-08
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 37/178 (20%)
Query: 439 AIQILNELTDDEETIISTGVGQHQMWAIQ-----FYMYKRARQLLTSSGFGSMGFGLPAA 493
AI + E + D + +TG +++ +Q FYM GSMG
Sbjct: 4 AIAEIIEASGDTPIVSTTGYASRELYDVQDRDGHFYM------------LGSMGLAGSIG 51
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAEN-IPVKILLINNQYLGMNVEYEDRYF 552
+G A+ ++V +DGDGS +MN L + + +++++N+ G
Sbjct: 52 LGLALGLSRKVIV-VDGDGSLLMNPGVLLTAGEFTPLNLILVVLDNRAYG---------- 100
Query: 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLL 610
S G P S + ++ +A ACG + + +L T GP LL
Sbjct: 101 ------STGGQPTPSSNV--NLEAWAAACGYLVLSAPLLGGLGSEFAGLLATTGPTLL 150
>gnl|CDD|235721 PRK06163, PRK06163, hypothetical protein; Provisional.
Length = 202
Score = 53.7 bits (129), Expect = 4e-08
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 441 QILNELTDDEETIISTGVGQHQMWAI-----QFYMYKRARQLLTSSGFGSMGFGLPAAMG 495
+++ +L D+E I G +WA FYM GSMG P A+G
Sbjct: 21 RLVAKLKDEEAVIGGIGNTNFDLWAAGQRPQNFYM------------LGSMGLAFPIALG 68
Query: 496 AAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536
A+A P V+ ++GDGS +M L L I A P + +I
Sbjct: 69 VALAQPKRRVIALEGDGSLLMQLGALGTIAALA-PKNLTII 108
>gnl|CDD|215311 PLN02573, PLN02573, pyruvate decarboxylase.
Length = 578
Score = 46.6 bits (111), Expect = 3e-05
Identities = 70/295 (23%), Positives = 128/295 (43%), Gaps = 50/295 (16%)
Query: 84 GVTTVFAYPGGASIEI-HQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGP 142
GVT VF+ PG ++ + + + I +E +AA+GYAR+ G G C+V+
Sbjct: 30 GVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARGV-GACVVTFTV 88
Query: 143 GVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTD-----------------AFQEIPVVE 185
G +++ + AYS+++P++ I G + GT+ FQ +
Sbjct: 89 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV---- 144
Query: 186 VTRYMTKHNYLVLDVDDIPRIIKEAFFIATS-GRPGPVLIDIPVDVQLELAVPNWNQPCK 244
T + ++ +++D +I A I+T+ PV I + ++ + P +++
Sbjct: 145 -----TCYQAVINNLEDAHELIDTA--ISTALKESKPVYISVSCNLA-AIPHPTFSRE-P 195
Query: 245 LPSCISSLPKEPDELALRQTLKLIVESKN----PVLCVGGGCLNSSEELRKFVGL---TG 297
+P ++ P+ ++++L ++ E N PVL VGG L ++ + FV L +G
Sbjct: 196 VPFFLT--PRLSNKMSLEAAVEAAAEFLNKAVKPVL-VGGPKLRVAKACKAFVELADASG 252
Query: 298 IPVTCTTMGLGLFPCTDELCLRMVGMF----GTVYANYAVNECDLLLAAGVRFNE 348
PV GL P +G + T + V D L AG FN+
Sbjct: 253 YPVAVMPSAKGLVPEHHP---HFIGTYWGAVSTPFCAEIVESADAYLFAGPIFND 304
Score = 40.5 bits (95), Expect = 0.003
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 483 FGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
+GS+G+ + A +G A A P V+ GDGSF + Q+++ + I LINN
Sbjct: 427 YGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIRCGQKSIIFLINNGGYT 486
Query: 543 MNVEYED 549
+ VE D
Sbjct: 487 IEVEIHD 493
>gnl|CDD|239470 cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family),
2-oxoglutarate ferredoxin oxidoreductase (OGFOR)
subfamily, TPP-binding module; OGFOR catalyzes the
oxidative decarboxylation of 2-oxo-acids, with
ferredoxin acting as an electron acceptor. In the TCA
cycle, OGFOR catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA. In the reductive
tricarboxylic acid cycle found in the anaerobic
autotroph Hydrogenobacter thermophilus, OGFOR catalyzes
the reductive carboxylation of succinyl-CoA to produce
2-oxoglutarate. Thauera aromatica OGFOR has been shown
to provide reduced ferredoxin to benzoyl-CoA reductase,
a key enzyme in the anaerobic metabolism of aromatic
compounds. OGFOR is dependent on TPP and a divalent
metal cation for activity.
Length = 193
Score = 44.1 bits (105), Expect = 5e-05
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 440 IQILNELT-DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSM-GFGLPAAMGAA 497
+ L EL D E+ ++ +G+G R + GF ++ G L A G
Sbjct: 15 AKALAELGIDPEKVVVVSGIGCS----------SRLPYYFNTYGFHTLHGRALAVATGVK 64
Query: 498 VANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGM 543
+ANP V+ + GDG + NI + +++ NNQ G+
Sbjct: 65 LANPDLTVIVVSGDGDLAAIGGNHFIHAARRNIDITVIVHNNQIYGL 111
>gnl|CDD|238966 cd02008, TPP_IOR_alpha, Thiamine pyrophosphate (TPP) family,
IOR-alpha subfamily, TPP-binding module; composed of
proteins similar to indolepyruvate ferredoxin
oxidoreductase (IOR) alpha subunit. IOR catalyzes the
oxidative decarboxylation of arylpyruvates, such as
indolepyruvate or phenylpyruvate, which are generated by
the transamination of aromatic amino acids, to the
corresponding aryl acetyl-CoA.
Length = 178
Score = 41.9 bits (99), Expect = 3e-04
Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 13/130 (10%)
Query: 482 GFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKAENIPVKILLINNQY 540
MG + A+G A A+ VV + GD +F + + L + +++++N+
Sbjct: 49 TCTCMGASIGVAIGMAKASEDKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNRT 108
Query: 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK---KKDVRAA 597
M + + G L + D+ A G+ V K +R
Sbjct: 109 TAMT---------GGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREE 159
Query: 598 IQLMLETPGP 607
++ L PG
Sbjct: 160 LKEALAVPGV 169
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 315
Score = 42.2 bits (100), Expect = 6e-04
Identities = 44/167 (26%), Positives = 61/167 (36%), Gaps = 50/167 (29%)
Query: 470 MYKRARQLLTSSGFGSMGFGLPAAMGAAVA----NPGAIVVDIDGDG---------SFIM 516
M+ R + G G +G +P A G A A + GDG SF M
Sbjct: 98 MFDREKNFY--GGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNM 155
Query: 517 NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLK 576
AA+ +PV ++ NN Y M G + +S D+ K
Sbjct: 156 -----AAL--WKLPVIFVIENNLY-AM------------------GTAVERSSSVTDLYK 189
Query: 577 FAEACGIPAARVTKKKDVRA-------AIQLMLETPGPYLLDVMVSY 616
E+ GIP RV DV A A++ GP LL+ M +Y
Sbjct: 190 RGESFGIPGERV-DGMDVLAVREAAKEAVERARSGKGPILLE-MKTY 234
>gnl|CDD|224087 COG1165, MenD,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase [Coenzyme metabolism].
Length = 566
Score = 41.9 bits (99), Expect = 9e-04
Identities = 50/194 (25%), Positives = 73/194 (37%), Gaps = 28/194 (14%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLT-----RSNIRSILPRHEQGGIFAAE 124
A + +E L R GV V PG S L I + E+ F A
Sbjct: 8 TLWARVFLEELARLGVRDVVICPGSRS----TPLALAAAAHDAITVHVHIDERSAGFFAL 63
Query: 125 GYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVV 184
G A++S P + +SG V N+ +++A +P++ +T +L G A Q I
Sbjct: 64 GLAKASKRPVAVICTSGTAVANLYPAVIEANLSRVPLIVLTADRPPELRGCGANQAI--- 120
Query: 185 EVTRYMTKH-NY---LVLDVDDIP------RIIKEAFFIATSGRPGPVLIDIPVDVQL-- 232
+ T + L L DDI I A A + GPV I++P L
Sbjct: 121 DQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQARTPHAGPVHINVPFREPLVP 180
Query: 233 ----ELAVPNWNQP 242
E A W +P
Sbjct: 181 DLEPEGAGTPWGRP 194
Score = 33.1 bits (76), Expect = 0.46
Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 23/128 (17%)
Query: 493 AMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552
A+G A A V I GD SF+ +L L +K P+ I+++NN G+ F
Sbjct: 431 ALGIARATQKPTVALI-GDLSFLHDLNGLLLLKKVPQPLTIVVVNNNGGGI--------F 481
Query: 553 EANRANSFL---GDPLRKSEIF--PDMLKFAEAC---GIPAARVTKKKDVRAAIQLMLET 604
L +F P L FA G+ R ++ A+
Sbjct: 482 S------LLPQAQSEPVFERLFGTPHGLDFAHLAATYGLEYHRPQSWDELGEALDQAWRR 535
Query: 605 PGPYLLDV 612
G +++V
Sbjct: 536 SGTTVIEV 543
>gnl|CDD|238967 cd02009, TPP_SHCHC_synthase, Thiamine pyrophosphate (TPP) family,
SHCHC synthase subfamily, TPP-binding module; composed
of proteins similar to Escherichia coli
2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic
acid (SHCHC) synthase (also called MenD). SHCHC synthase
plays a key role in the menaquinone biosynthetic
pathway, converting isochorismate and 2-oxoglutarate to
SHCHC, pyruvate and carbon dioxide. The enzyme requires
TPP and a divalent metal cation for activity.
Length = 175
Score = 39.5 bits (93), Expect = 0.001
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 25/129 (19%)
Query: 493 AMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG------MNVE 546
A+G A+A V + GD SF+ +L L K E + + I++INN G +
Sbjct: 60 ALGIALATDK-PTVLLTGDLSFLHDLNGLLLGKQEPLNLTIVVINNN--GGGIFSLLPQA 116
Query: 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC---GIPAARVTKKKDVRAAIQLMLE 603
+ FE G P L F G+ RV+ ++ A++ L
Sbjct: 117 SFEDEFE-----RLFGTPQG--------LDFEHLAKAYGLEYRRVSSLDELEQALESALA 163
Query: 604 TPGPYLLDV 612
GP++++V
Sbjct: 164 QDGPHVIEV 172
>gnl|CDD|183347 PRK11866, PRK11866, 2-oxoacid ferredoxin oxidoreductase subunit
beta; Provisional.
Length = 279
Score = 37.8 bits (88), Expect = 0.013
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 15/107 (14%)
Query: 441 QILNELT-DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSM-GFGLPAAMGAAV 498
+ L EL E ++ +G+G + L + G + G LP A G
Sbjct: 24 KALAELGIPPENVVVVSGIGCSS----------NLPEFLNTYGIHGIHGRVLPIATGVKW 73
Query: 499 ANPGAIVVDI--DGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
ANP V+ DGDG I L L N+ + ++ NNQ G+
Sbjct: 74 ANPKLTVIGYGGDGDGYGI-GLGHLPHAARRNVDITYIVSNNQVYGL 119
>gnl|CDD|235604 PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase
subunit beta; Validated.
Length = 301
Score = 36.8 bits (86), Expect = 0.026
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 15/62 (24%)
Query: 490 LPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKA--------ENIPVKILLINNQYL 541
+ A GA +ANP V+ + GDG +LA+I NI + +++ NN
Sbjct: 76 IAFATGAKLANPDLEVIVVGGDG-------DLASIGGGHFIHAGRRNIDITVIVENNGIY 128
Query: 542 GM 543
G+
Sbjct: 129 GL 130
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family,
E1 of PDC_ADC_BCADC subfamily, TPP-binding module;
composed of proteins similar to the E1 components of the
human pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). PDC catalyzes the
irreversible oxidative decarboxylation of pyruvate to
produce acetyl-CoA in the bridging step between
glycolysis and the citric acid cycle. ADC participates
in the breakdown of acetoin while BCADC participates in
the breakdown of branched chain amino acids. BCADC
catalyzes the oxidative decarboxylation of
4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
3-methyl-2-oxobutanoate (branched chain 2-oxo acids
derived from the transamination of leucine, valine and
isoleucine).
Length = 293
Score = 36.7 bits (86), Expect = 0.030
Identities = 35/155 (22%), Positives = 54/155 (34%), Gaps = 49/155 (31%)
Query: 481 SGFGSMGFGLPAAMGAAVA----NPGAIVVDIDGDGS-----FI--MNLQELAAIKAENI 529
G G +G +P A GAA+A + V GDG+ F +N AA+ +
Sbjct: 101 GGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNF---AALW--KL 155
Query: 530 PVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT 589
PV + NN Y ++ P + + A A GIP RV
Sbjct: 156 PVIFVCENNGY-AIST------------------PTSRQTAGTSIADRAAAYGIPGIRV- 195
Query: 590 KKKD----------VRAAIQLMLETPGPYLLDVMV 614
D + A++ GP L++ +
Sbjct: 196 ---DGNDVLAVYEAAKEAVERARAGGGPTLIEAVT 227
>gnl|CDD|132933 cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K
type, a serine protease, has catalytic Ser-Lys dyad.
Signal peptide peptidase A (SppA; Peptidase S49;
Protease IV) 36K type: SppA is found in all three
domains of life and is involved in the cleavage of
signal peptides after their removal from the precursor
proteins by signal peptidases. Members in this subfamily
are all bacterial and include sohB peptidase and protein
C. These are sometimes referred to as 36K type since
they contain only one domain, unlike E. coli SppA that
also contains an amino-terminal domain. Site-directed
mutagenesis and sequence analysis have shown these SppAs
to be serine proteases. The predicted active site serine
for members in this family occurs in a transmembrane
domain. Mutagenesis studies also suggest that the
catalytic center comprises a Ser-Lys dyad and not the
usual Ser-His-Asp catalytic triad found in the majority
of serine proteases.
Length = 214
Score = 34.5 bits (80), Expect = 0.10
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 470 MYKRARQLLTSSGFGSMGFGLPAAMGAAVANP--GAIVVDIDGDGSFIMNLQELA-AIKA 526
+ R L SSG S G+ AA+ AA+A+P AIV+DID G + + ELA AI+A
Sbjct: 11 LVPRGSWLEASSGLTSYE-GIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRA 69
>gnl|CDD|237006 PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase
subunit beta; Reviewed.
Length = 286
Score = 34.0 bits (79), Expect = 0.17
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 487 GFGLPAAMGAAVANP--GAIVVDIDGDGSFI-MNLQELAAIKAENIPVKILLINNQYLGM 543
G L A G +ANP IVV DGD I N + A++ NI + +L NNQ G+
Sbjct: 72 GRALAIATGLKLANPDLTVIVVTGDGDALAIGGN-HFIHALR-RNIDITYILFNNQIYGL 129
>gnl|CDD|233764 TIGR02177, PorB_KorB, 2-oxoacid:acceptor oxidoreductase, beta
subunit, pyruvate/2-ketoisovalerate family. A number of
anaerobic and microaerophilic species lack pyruvate
dehydrogenase and have instead a four subunit,
oxygen-sensitive pyruvate oxidoreductase, with either
ferredoxins or flavodoxins used as the acceptor. Several
related four-subunit enzymes may exist in the same
species. This model describes a subfamily of beta
subunits, representing mostly pyruvate and
2-ketoisovalerate specific enzymes.
Length = 287
Score = 34.0 bits (78), Expect = 0.18
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 443 LNELT-DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF-GSMGFGLPAAMGAAVAN 500
L EL D E+ ++ +G+G + + +GF G G LP A G +AN
Sbjct: 20 LAELNLDPEQVVVVSGIGCS----------AKTPHYVNVNGFHGLHGRALPVATGIKLAN 69
Query: 501 PG--AIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
P IVV DGD I +AA + N+ + +++ +NQ G+
Sbjct: 70 PHLKVIVVGGDGDLYGIGGNHFVAAGR-RNVDITVIVHDNQVYGL 113
>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated.
Length = 994
Score = 34.3 bits (79), Expect = 0.27
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGS-------MGFGLPAAMGAAVAN 500
G Q M+ Q Y+R++ + + FGS + G+PA + AA A+
Sbjct: 147 GYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAAD 197
>gnl|CDD|226466 COG3957, COG3957, Phosphoketolase [Carbohydrate transport and
metabolism].
Length = 793
Score = 32.8 bits (75), Expect = 0.67
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDG 512
G +G+ L A GAA NP IV + GDG
Sbjct: 153 GELGYALSHAYGAAFDNPDLIVACVVGDG 181
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 32.2 bits (74), Expect = 0.71
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 362 KIVHIDIDSNEI-----GKVKLPDVSICADAKLVFNRMNMI 397
I+H DI + I G+VKL D + A R M+
Sbjct: 118 GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMV 158
>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain
superfamily. This CD includes the heat shock protein
67B2 of Drosophila melanogaster and other similar
proteins, many of which are uncharacterized.
Length = 106
Score = 29.9 bits (68), Expect = 1.3
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 16/67 (23%)
Query: 44 STLNIPTSTAP--FQQT--DFSSRFAPDKPRKGADIIV---------EALER---QGVTT 87
+NIP S+ P + +F ++ KP K ++I A E G
Sbjct: 34 GAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSKAAAELARSLGYEN 93
Query: 88 VFAYPGG 94
V YPG
Sbjct: 94 VGNYPGS 100
>gnl|CDD|129266 TIGR00162, TIGR00162, TIGR00162 family protein. This model
represents one out of two closely related ortholgous
sets of proteins that, so far, are found only in but are
universal among the Archaea. This ortholog set includes
MJ1210 from Methanococcus jannaschii and AF0525 from
Archaeoglobus fulgidus while excluding MJ0106 and AF1251
[Hypothetical proteins, Conserved].
Length = 188
Score = 30.2 bits (68), Expect = 2.2
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 83 QGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEG----YARSSGTPGVCLV 138
+ V + Y S E+ + L + R GGI A G + G PG CL+
Sbjct: 61 KLVEEPYVYGAATSPELVEELKEHGV---KFREPGGGIIGASGLLLGVSELEGIPGACLM 117
Query: 139 SSGPG 143
PG
Sbjct: 118 GETPG 122
>gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein;
Provisional.
Length = 271
Score = 30.7 bits (69), Expect = 2.3
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 329 ANYAVNECDLLLAAGVRFNERMTSKLEDFATR--AKIVHIDIDSNEIGKVKLPDVSICAD 386
A +++CDLLL G + + L A R KIV ++I I ++ D + A
Sbjct: 193 AEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITN-RISDYHVRAK 251
Query: 387 A 387
Sbjct: 252 F 252
>gnl|CDD|223945 COG1013, PorB, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, beta subunit
[Energy production and conversion].
Length = 294
Score = 30.4 bits (69), Expect = 2.5
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGM 543
A G +ANP V+ I GDG ++ + L N + ++++N+ G
Sbjct: 75 AAAVATGIKLANPALSVIVIGGDGDAYDIGGNHLIHALRRNHDITYIVVDNEVYGN 130
>gnl|CDD|224834 COG1923, Hfq, Uncharacterized host factor I protein [General
function prediction only].
Length = 77
Score = 28.1 bits (63), Expect = 2.7
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 517 NLQE--LAAIKAENIPVKILLINNQYLGMNVEYEDRY 551
NLQ+ L A++ E IPV I L+N L VE D +
Sbjct: 6 NLQDPFLNALRKEKIPVTIFLVNGFKLQGQVESFDNF 42
>gnl|CDD|225555 COG3010, NanE, Putative N-acetylmannosamine-6-phosphate epimerase
[Carbohydrate transport and metabolism].
Length = 229
Score = 29.9 bits (68), Expect = 2.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 562 GDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRA 596
G+PL EI M AE G R+ +D++A
Sbjct: 26 GEPLDSPEIVAAMALAAEQGGAVGIRIEGVEDIKA 60
>gnl|CDD|183349 PRK11869, PRK11869, 2-oxoacid ferredoxin oxidoreductase subunit
beta; Provisional.
Length = 280
Score = 29.7 bits (67), Expect = 3.8
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 443 LNELT-DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSM-GFGLPAAMGAAVAN 500
L+EL + +I +G+GQ + + +GF ++ G +PAA N
Sbjct: 27 LSELNLKPRQVVIVSGIGQA----------AKMPHYINVNGFHTLHGRAIPAATAVKATN 76
Query: 501 PGAIVVDIDGDG 512
P V+ GDG
Sbjct: 77 PELTVIAEGGDG 88
>gnl|CDD|236020 PRK07449, PRK07449,
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate synthase; Validated.
Length = 568
Score = 30.2 bits (69), Expect = 3.9
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLT-----RSNIRSILPRH--EQGGIFAAEG 125
A +I+E L R GV V PG S LT +R H E+ F A G
Sbjct: 12 AAVILEELTRLGVRHVVIAPGSRS----TPLTLAAAEHPRLRLHT--HFDERSAGFLALG 65
Query: 126 YARSSGTPGVCLV-SSGPGVTN 146
A++S P V ++ +SG V N
Sbjct: 66 LAKASKRP-VAVIVTSGTAVAN 86
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 29.5 bits (67), Expect = 4.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 470 MYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSF 514
Y ++ +G+ ++ G A+ AA+AN G + V ID SF
Sbjct: 96 KYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSF 140
>gnl|CDD|202233 pfam02406, MmoB_DmpM, MmoB/DmpM family. This family consists of
monooxygenase components such as MmoB methane
monooxygenase (EC:1.14.13.25) regulatory protein B. When
MmoB is present at low concentration it converts methane
monooxygenase from an oxidase to a hydroxylase and
stabilises intermediates required for the activation of
dioxygen. Also found in this family is DmpM or Phenol
hydroxylase (EC:1.14.13.7) protein component P2, this
protein lacks redox co-factors and is required for
optimal turnover of Phenol hydroxylase.
Length = 87
Score = 27.9 bits (63), Expect = 4.7
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 500 NPGAIVVD------IDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553
NPGA+V D ID +G ++ + + V+ L +N ++ +D F
Sbjct: 25 NPGAVVEDRPAYVRIDAEGELRIDRETIEEALGRPFDVQELEVNLSSFAGRIDEDDDEFT 84
>gnl|CDD|192267 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enzyme splits
fructose-6-P and/or xylulose-5-P with the aid of
inorganic phosphate into either acetyl-P and
erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P
EC:4.1.2.9, EC:4.1.2.22. This family is distantly
related to transketolases e.g. pfam02779.
Length = 379
Score = 29.7 bits (67), Expect = 4.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDG 512
G +G+ L A GA NP IV + GDG
Sbjct: 140 GELGYALSHAYGAVFDNPDLIVACVVGDG 168
>gnl|CDD|233254 TIGR01059, gyrB, DNA gyrase, B subunit. This model describes the
common type II DNA topoisomerase (DNA gyrase). Two
apparently independently arising families, one in the
Proteobacteria and one in Gram-positive lineages, are
both designated toposisomerase IV. Proteins scoring
above the noise cutoff for this model and below the
trusted cutoff for topoisomerase IV models probably
should be designated GyrB [DNA metabolism, DNA
replication, recombination, and repair].
Length = 654
Score = 29.6 bits (67), Expect = 5.3
Identities = 18/63 (28%), Positives = 24/63 (38%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGT 132
D I + G TV G ++IH S + +L GG F + Y S G
Sbjct: 51 CDTINVTINDDGSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDKDSYKVSGGL 110
Query: 133 PGV 135
GV
Sbjct: 111 HGV 113
>gnl|CDD|238250 cd00443, ADA_AMPD, Adenosine/AMP deaminase. Adenosine deaminases
(ADAs) are present in pro- and eukaryotic organisms and
catalyze the zinc dependent irreversible deamination of
adenosine nucleosides to inosine nucleosides and
ammonia. The eukaryotic AMP deaminase catalyzes a
similar reaction leading to the hydrolytic removal of an
amino group at the 6 position of the adenine nucleotide
ring, a branch point in the adenylate catabolic pathway.
Length = 305
Score = 29.2 bits (66), Expect = 5.9
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 517 NLQELAAIKAENIPVKILLINNQYLGMNVEYE----DRYFEAN 555
L L +K NIP+++ +N LG YE R+F+A
Sbjct: 205 ELIYL--VKLRNIPIEVCPTSNVVLGTVQSYEKHPFMRFFKAG 245
>gnl|CDD|224541 COG1626, TreA, Neutral trehalase [Carbohydrate transport and
metabolism].
Length = 558
Score = 29.3 bits (66), Expect = 7.2
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 563 DPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVP 622
P + + F D+ ++D A +Q+ +E GP ++DV + + P
Sbjct: 2 LPSQINRPFRDVDIDLNLLLE-------REDTEANLQITIEDTGPKVVDVGTANSRDLRP 54
Query: 623 MIPYDKSFKD 632
Y + F+D
Sbjct: 55 TYFYGELFQD 64
>gnl|CDD|132917 cd07034, TPP_PYR_PFOR_IOR-alpha_like, Pyrimidine (PYR) binding
domain of pyruvate ferredoxin oxidoreductase (PFOR),
indolepyruvate ferredoxin oxidoreductase alpha subunit
(IOR-alpha), and related proteins. Thiamine
pyrophosphate (TPP family), pyrimidine (PYR) binding
domain, of pyruvate ferredoxin oxidoreductase (PFOR),
indolepyruvate ferredoxin oxidoreductase (IOR) alpha
subunit (IOR-alpha), and related proteins, subfamily.
The PYR domain is found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. A polar interaction between the
conserved glutamate of the PYR domain and the N1' of the
TPP aminopyrimidine ring is shared by most TPP-dependent
enzymes, and participates in the activation of TPP. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this sub-family. Most TPP-dependent enzymes
have the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites. For many of these enzymes the
active sites lie between PP and PYR domains on different
subunits. However, for the homodimeric enzyme
Desulfovibrio africanus pyruvate:ferredoxin
oxidoreductase (PFOR), each active site lies at the
interface of the PYR and PP domains from the same
subunit. This subfamily includes proteins characterized
as pyruvate NADP+ oxidoreductase (PNO). PFOR and PNO
catalyze the oxidative decarboxylation of pyruvate to
form acetyl-CoA, a crucial step in many metabolic
pathways. The facultative anaerobic mitochondrion of the
photosynthetic protist Euglena gracilis oxidizes
pyruvate with PNO. IOR catalyzes the oxidative
decarboxylation of arylpyruvates, such as indolepyruvate
or phenylpyruvate.
Length = 160
Score = 28.2 bits (64), Expect = 7.5
Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 21/167 (12%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-----NIRSILPRHEQGGIFAAEGY 126
G + + GV V AYP S EI ++L ++ + E AA G
Sbjct: 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIG- 59
Query: 127 ARSSGTPGVCLVSSGPGVTNIMT-GLMDAYSDSIPILAITGQ---VSQKLLGTDAFQEIP 182
A ++G + +SGPG+ N+M L A +P++ + Q S L D ++
Sbjct: 60 ASAAGARAMT-ATSGPGL-NLMAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQ-SDL- 115
Query: 183 VVEVTRYMTKHNYLVL---DVDDIPRIIKEAFFIA-TSGRPGPVLID 225
+ H + VL V + + EAF +A P VL D
Sbjct: 116 ---MAARYGGHPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159
>gnl|CDD|222531 pfam14085, DUF4265, Domain of unknown function (DUF4265). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 139 and 168 amino
acids in length.
Length = 117
Score = 27.5 bits (62), Expect = 8.1
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 16/79 (20%)
Query: 43 NSTLNIPTSTAPFQQTDFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQS 102
NST+ + + A + LE G T G ++++ S
Sbjct: 52 NSTIRV---------------VVDEDGEDLAQKVRAELEALGCTVEGLSAGMLAVDVPAS 96
Query: 103 LTRSNIRSIL-PRHEQGGI 120
+ I IL EQGG+
Sbjct: 97 VDFDAIEEILDELREQGGL 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,811,063
Number of extensions: 3426148
Number of successful extensions: 3885
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3533
Number of HSP's successfully gapped: 137
Length of query: 643
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 540
Effective length of database: 6,369,140
Effective search space: 3439335600
Effective search space used: 3439335600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.5 bits)