RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 040733
(643 letters)
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 877 bits (2268), Expect = 0.0
Identities = 398/582 (68%), Positives = 485/582 (83%), Gaps = 2/582 (0%)
Query: 60 FSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQG 118
F SRFAPD+PRKGADI+VEALERQGV TVFAYPGGAS+EIHQ+LTRS+ IR++LPRHEQG
Sbjct: 2 FISRFAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQG 61
Query: 119 GIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAF 178
G+FAAEGYARSSG PG+C+ +SGPG TN+++GL DA DS+P++AITGQV ++++GTDAF
Sbjct: 62 GVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF 121
Query: 179 QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPN 238
QE P+VEVTR +TKHNYLV+DV+DIPRII+EAFF+ATSGRPGPVL+D+P D+Q +LA+PN
Sbjct: 122 QETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLAIPN 181
Query: 239 WNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGI 298
W Q +LP +S +PK P++ L Q ++LI ESK PVL VGGGCLNSS+EL +FV LTGI
Sbjct: 182 WEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTGI 241
Query: 299 PVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA 358
PV T MGLG +P DEL L M+GM GTVYANYAV DLLLA GVRF++R+T KLE FA
Sbjct: 242 PVASTLMGLGSYPADDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFA 301
Query: 359 TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHE 418
+RAKIVHIDIDS EIGK K P VS+C D KL MN +LE++ DF WR EL+
Sbjct: 302 SRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNV 361
Query: 419 QKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
QK+K+P S+KTFGE IPPQYAI++L+ELTD + IISTGVGQHQMWA QFY YK+ RQ L
Sbjct: 362 QKQKFPLSFKTFGEAIPPQYAIKVLDELTDG-KAIISTGVGQHQMWAAQFYNYKKPRQWL 420
Query: 479 TSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
+S G G+MGFGLPAA+GA+VANP AIVVDIDGDGSFIMN+QELA I+ EN+PVK+LL+NN
Sbjct: 421 SSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNN 480
Query: 539 QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
Q+LGM +++EDR+++ANRA++FLGDP ++ EIFP+ML FA ACGIPAARVTKK D+R AI
Sbjct: 481 QHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAI 540
Query: 599 QLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
Q ML+TPGPYLLDV+ +QEHV+PMIP +F D I E DGR
Sbjct: 541 QTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGR 582
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 763 bits (1972), Expect = 0.0
Identities = 237/674 (35%), Positives = 351/674 (52%), Gaps = 53/674 (7%)
Query: 1 MATTLSPPFIFNTPKSPPTISRPLMPLPYSYNRIKKPSLHVTNSTLNIPTSTAPFQQTDF 60
++ L P + R M P + + N+ P + +
Sbjct: 7 HSSGLVPRGSGMKETAAAKFERQHMDSP-DLGTDDDDKAMGSAPSFNVDPLEQPAEPSKL 65
Query: 61 SSRFAPDKPRK-------GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSIL 112
+ + + G I E + RQ V TVF YPGGA + ++ ++ S+ +L
Sbjct: 66 AKKLRAEPDMDTSFVGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVL 125
Query: 113 PRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL 172
P+HEQG AEGYAR+SG PGV LV+SGPG TN++T + DA++D IP++ TGQV
Sbjct: 126 PKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSA 185
Query: 173 LGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL 232
+GTDAFQE VV ++R TK N +V V+++P I EAF IATSGRPGPVL+D+P DV
Sbjct: 186 IGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTA 245
Query: 233 ELAVPNWNQPCKLPSCISSLP-----KEPDELALRQTLKLIVESKNPVLCVGGGCLNS-- 285
+ LPS + E ++ + LI +K PVL VG G LN
Sbjct: 246 AILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHAD 305
Query: 286 -SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGV 344
L++ IPVT T GLG F D L M+GM G AN AV DL++A G
Sbjct: 306 GPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGA 365
Query: 345 RFNERMTSKLEDFATRAK---------IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMN 395
RF++R+T + FA A+ I+H ++ I KV +++ DA +M
Sbjct: 366 RFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMM 425
Query: 396 MILESKGVGFMFDFSAWREELHEQKKKYPFSY--KTFGEEIPPQYAIQILNELTDDE--E 451
+ + S W ++++ KK+YP++Y +T G +I PQ I+ L+++ +D
Sbjct: 426 SKIFPVK-----ERSEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLSKVANDTGRH 480
Query: 452 TIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGD 511
I++TGVGQHQMWA Q + ++ +TS G G+MG+GLPAA+GA VA P ++V+DIDGD
Sbjct: 481 VIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGD 540
Query: 512 GSFIMNLQELAAIKAENIPVKILLINNQYLGM-----NVEYEDRYFEANRANSFLGDPLR 566
SF M L EL++ PVKIL++NN+ GM ++ YE RY +++ +
Sbjct: 541 ASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRY-----SHTHQLN--- 592
Query: 567 KSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPY 626
PD +K AEA G+ RV K++++ A ++ + T GP LL+V V + V+PM+
Sbjct: 593 -----PDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAG 647
Query: 627 DKSFKDTILEDDGR 640
+ I D
Sbjct: 648 GSGLDEFINFDPEV 661
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 748 bits (1933), Expect = 0.0
Identities = 141/583 (24%), Positives = 235/583 (40%), Gaps = 25/583 (4%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN--IRSILPRHEQGGIFAAEGYA 127
++GAD+IVEALE G V + G S + + ++S+ R I P E GG + GY
Sbjct: 4 KRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYN 63
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLG-TDAFQEIPVVEV 186
G + + +A + IP + I +L G ++A Q++P
Sbjct: 64 YVKDRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQSF 123
Query: 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLP 246
T + + V +D + I EAF +A GP +DIP D+ + P
Sbjct: 124 TP-IARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDLTADQIDDKALVPRGAT 182
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTT 304
+ +R+ +V +KNPV+ GGG S SE L K + G+PV T+
Sbjct: 183 R--AKSVLHAPNEDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEMVGVPVVTTS 240
Query: 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIV 364
G G+FP T L + G G AN + D +L G R ++ ++ K V
Sbjct: 241 TGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSDWGIAQ-GYITKMPKFV 299
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGV--GFMFDFSAWREELHEQKKK 422
H+D D +G P +S+ ADAK ++ +L + + E +
Sbjct: 300 HVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAA 359
Query: 423 YPFSYK----TFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
+ + G A+ + ++ E II T +G H + + +R R+L+
Sbjct: 360 WDGWVREQESGDGMPASMFRAMAEVRKVQRPE-DIIVTDIGNHTLPMFGGAILQRPRRLV 418
Query: 479 TSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
TS G +G G P A+GA +A P + V GDG+ + E +PV ++ N
Sbjct: 419 TSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVEHKLPVITMVFTN 478
Query: 539 QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
+ G N + F N F+ PD + A+A G V + D+ A+
Sbjct: 479 ESYGANWTLMNHQFGQNNWTEFMN---------PDWVGIAKAFGAYGESVRETGDIAGAL 529
Query: 599 QLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGRA 641
Q +++ P L+++ VS + + + +
Sbjct: 530 QRAIDSGKPALIEIPVSKTQGLASDPVGGVGPNLLLKGREIPV 572
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 729 bits (1884), Expect = 0.0
Identities = 139/565 (24%), Positives = 240/565 (42%), Gaps = 32/565 (5%)
Query: 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYA 127
+ GAD++V LE QGV VF PG ++ SL S+IR I RHE F A
Sbjct: 9 QWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVG 68
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVT 187
R +G GV LV+SGPG +N++TG+ A S+ P++A+ G V + Q + V +
Sbjct: 69 RITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMF 128
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPS 247
+TK+ V D + ++ AF A GRPG + +P DV P
Sbjct: 129 SPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSGKVLPASGAPQ 188
Query: 248 CISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTM 305
+ A+ Q KLI ++KNP+ +G S+ LR+ + + IPVT T
Sbjct: 189 -----MGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQ 243
Query: 306 GLGLFPCTDE-LCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIV 364
G + VG+F + + DL++ G E + + A +V
Sbjct: 244 AAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAMW--NSGNATLV 301
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424
HID+ + PDV + D N++ ++ + V + + Q++
Sbjct: 302 HIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHRLVL-SPQAAEILRDRQHQRELLD 360
Query: 425 FSYKTFGEE-IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
+ + P ++ + ++ + + ++ +G +W ++ RARQ++ S+G
Sbjct: 361 RRGAQLNQFALHPLRIVRAMQDIVNS-DVTLTVDMGSFHIWIARYLYTFRARQVMISNGQ 419
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
+MG LP A+GA + NP VV + GDG F+ + EL V L+ + M
Sbjct: 420 QTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNGYNM 479
Query: 544 -----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
+Y+ R + G D +AE+ G V + + +
Sbjct: 480 VAIQEEKKYQ-RL-----SGVEFGP--------MDFKAYAESFGAKGFAVESAEALEPTL 525
Query: 599 QLMLETPGPYLLDVMVSYQEHVVPM 623
+ ++ GP ++ + V Y+++ + M
Sbjct: 526 RAAMDVDGPAVVAIPVDYRDNPLLM 550
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 721 bits (1863), Expect = 0.0
Identities = 144/583 (24%), Positives = 235/583 (40%), Gaps = 46/583 (7%)
Query: 65 APDKPRKGADIIVEALERQGVTTVFAYPGGASIEI-HQSLTRSNIRSILPRHEQGGIFAA 123
AP A ++ L GV VF G + I + I +L RHE AA
Sbjct: 7 APSGKPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEV--EGIDFVLTRHEFTAGVAA 64
Query: 124 EGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQV-SQKLLGTDAFQEIP 182
+ AR +G P C + GPG+TN+ TG+ + D P++A+ Q S + D Q +
Sbjct: 65 DVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLD 124
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
V + M+K+ + +I ++ A A + GP I +PVD+ + P
Sbjct: 125 SVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSEGIDTTVP 184
Query: 243 CKLPSCISSLP----KEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLT 296
P+ + P + + A Q L+ E+K+PVL VG + S +R
Sbjct: 185 NP-PANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERL 243
Query: 297 GIPVTCTTMGLGLFPCTDELCL-----RMVGMFGTVYANYAVNECDLLLAAGVRFNERMT 351
IPV T + G+ P EL M G+ DL+L G + E +
Sbjct: 244 NIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLR 303
Query: 352 SKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSA 411
+ K V I N I +V PDV + D S G
Sbjct: 304 PSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGA----KQRH 359
Query: 412 WREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDE----ETIISTGVGQHQMWAIQ 467
E L + ++ +T+ + + I +N + ++ E I + +G + + +
Sbjct: 360 DIEPLRARIAEFLADPETYEDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVL 419
Query: 468 FYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAE 527
F + LTS+G S G+G+PAA+GA +A P I GDG F N +L I
Sbjct: 420 FARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIARL 479
Query: 528 NIPVKILLINNQYLGM-----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACG 582
N+P+ +++NN G+ N+ + + + D + AEA G
Sbjct: 480 NLPIVTVVVNNDTNGLIELYQNIGHHRSH-----DPAVKFGG-------VDFVALAEANG 527
Query: 583 IPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625
+ A R T ++++ AA++ E P+L++V V+Y P
Sbjct: 528 VDATRATNREELLAALRKGAELGRPFLIEVPVNY-----DFQP 565
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 719 bits (1859), Expect = 0.0
Identities = 131/573 (22%), Positives = 227/573 (39%), Gaps = 37/573 (6%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G +++V L + GV +F G I Q+ ++ I RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGA 65
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIP-VVEVTRYM 190
GV LV++G G TN +T + +A+ D P+L +TG + + T+ Q V + +
Sbjct: 66 KLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPI 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
TK + V+ + IPR++ +A A S GPVL+D+P D+ + + L S
Sbjct: 126 TKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLVL--S 183
Query: 251 SLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLG 308
+ PD L Q L L+ +++ PV+ +G + L FV TG+PV GL
Sbjct: 184 AHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFADYEGLS 243
Query: 309 LFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA-TRAKIVHID 367
+ + + A DL+L G RF A+++ +D
Sbjct: 244 MLSGLPDAMRGG-LVQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVD 302
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
D+ E+G+++ + I AD + D W ++ + ++ S
Sbjct: 303 PDACELGRLQGIALGIVADVGGTIEALAQATAQDAA--WPDRGDWCAKVTDLAQERYASI 360
Query: 428 KTF---GEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFG 484
+ P +A Q++ + D + +W + + L G
Sbjct: 361 AAKSSSEHALHPFHASQVIAKHVDA-GVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLG 419
Query: 485 SMGFGLPAAMGAAVANP--GAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
SMG G A+GA VA+ G + + GDGS ++ E + + +P+ ++++NNQ G
Sbjct: 420 SMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQSWG 479
Query: 543 M-----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAA 597
+ R + A A G V + AA
Sbjct: 480 ATLHFQQLAVGPNRVTGTRLEN------------GSYHGVAAAFGADGYHVDSVESFSAA 527
Query: 598 IQLMLETPGPYLLDVMVS-----YQEHVVPMIP 625
+ L P ++V V+ +E ++ +
Sbjct: 528 LAQALAHNRPACINVAVALDPIPPEELILIGMD 560
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 705 bits (1821), Expect = 0.0
Identities = 177/618 (28%), Positives = 288/618 (46%), Gaps = 52/618 (8%)
Query: 52 TAPFQQTDFSSRFAPDKPR-------KGADIIVEALERQGVTTVFAYPGGASIEIHQSLT 104
+ SS P + D + LE++G+TT F PG A + ++
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMR 61
Query: 105 RSN-IRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPIL 162
+ IR IL RH +G AEGY R++ G GVCL +SGP T+++T L A +DSIPIL
Sbjct: 62 KHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPIL 121
Query: 163 AITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPV 222
ITGQ + L + FQ + + + + ++K V + +PR++++AF + SGRPGPV
Sbjct: 122 CITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPV 181
Query: 223 LIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGC 282
L+D+P DVQ+ + + LP P + + + ++++++++ PV+ GGG
Sbjct: 182 LVDLPFDVQVAEIEFDPDMYEPLP---VYKPA-ASRMQIEKAVEMLIQAERPVIVAGGGV 237
Query: 283 LNS--SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTV-YANYAVNECDLL 339
+N+ + L++F LT +PV T MG G P EL MVG+ Y N + D++
Sbjct: 238 INADAAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMV 297
Query: 340 LAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL- 398
G RF R T +E + KIVHIDI+ +IG+V PD+ I +DAK + +
Sbjct: 298 FGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ 357
Query: 399 ESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGV 458
E + G + W + ++K+ + PQ + +N+ + T +
Sbjct: 358 EMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGR-DVCYVTTI 416
Query: 459 GQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNL 518
G Q+ A Q + R + G +G+ +PAA+G A+P VV I GD F +
Sbjct: 417 GLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLI 476
Query: 519 QELAAIKAENIPVKILLINNQYLGM--------------NVEYEDRYFEANRANSFLGDP 564
+ELA NIP +L+NN YLG+ + +E+
Sbjct: 477 EELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEV--------- 527
Query: 565 LRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQ----LMLETPGPYLLDVMVSYQEHV 620
+ D +K AE G A RV K +D+ A + LM + P +++V++
Sbjct: 528 ---NGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVIL----ER 580
Query: 621 VPMIPYDKSFKDTILEDD 638
V I + + +D
Sbjct: 581 VTNISMGSELDNVMEFED 598
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 693 bits (1790), Expect = 0.0
Identities = 131/559 (23%), Positives = 236/559 (42%), Gaps = 23/559 (4%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSL--TRSNIRSILPRHEQGGIFAAEGYAR 128
+++ LE GV ++ PGG+ I +L R I I RHE+ G AA A+
Sbjct: 12 LAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAK 71
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR 188
+G GVC S+GPG T++M GL DA D +P+LA+ GQ + D FQE+ +
Sbjct: 72 LTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYA 131
Query: 189 YMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL-ELAVPNWNQPCKLPS 247
+ +N ++ +P +I EA A + + G ++ IPVD+ ++ +W
Sbjct: 132 DVADYNVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPAEDWYASANSYQ 190
Query: 248 CISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGL 307
+ L EPD A+ + + ++ ++ P++ G G + +EL + IP+ T
Sbjct: 191 --TPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAK 248
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
G+ L AN A+ + D++L G + SK F + ID
Sbjct: 249 GIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSK--AFKNTRYFLQID 306
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
ID ++GK D+++ ADA+ + + + + A + +
Sbjct: 307 IDPAKLGKRHKTDIAVLADAQKTLAAILAQVSEREST--PWWQANLANVKNWRAYLASLE 364
Query: 428 KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMG 487
+ ++ +N++ + + I S VG + A + + + +TS+ F +MG
Sbjct: 365 DKQEGPLQAYQVLRAVNKIAEP-DAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMG 423
Query: 488 FGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEY 547
G+P A+ A + P V ++ GDG M +Q+LA ++PV ++ N G ++
Sbjct: 424 VGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGF-IKD 482
Query: 548 EDRYFEANR-ANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQ--LMLET 604
E N D D K A+ + A RV K + + + +
Sbjct: 483 EQEDTNQNDFIGVEFND--------IDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQ 534
Query: 605 PGPYLLDVMVSYQEHVVPM 623
P L+D +++ +
Sbjct: 535 HEPVLIDAVITGDRPLPAE 553
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate,
flavoprotein, lyase, thiamine pyrophosphate; HET: TZD
ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3
c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A*
2jib_A*
Length = 568
Score = 685 bits (1771), Expect = 0.0
Identities = 122/579 (21%), Positives = 224/579 (38%), Gaps = 37/579 (6%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G ++++AL+ + T++ G + + R RHEQ +AA G
Sbjct: 12 GFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEG 71
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRY 189
PGVCL S PG N +T L A ++ P++ ++G ++++ ++E+ + V R
Sbjct: 72 KPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARP 131
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCI 249
K ++ + + DIP I A A SGRPG V +D+P + +
Sbjct: 132 HCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVEEANKLLFKPID 191
Query: 250 SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGL 307
+ + P E A+ + LI +K PV+ +G G + +E+R V TGIP M
Sbjct: 192 PAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAK 251
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTS-KLEDFATR-AKIVH 365
GL P +A+ +CD+ + G R N M K + + K V
Sbjct: 252 GLLPDNHPQS-------AAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQ 304
Query: 366 IDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF 425
IDI +NE+ + + D K + + L+ A + ++ K K
Sbjct: 305 IDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAPKADAEWTGALKAKVDGNKAKLAG 364
Query: 426 SY--KTFGEEIPPQYAIQILNELT-DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSG 482
+T + ++ ++ + + + + + R+ L S
Sbjct: 365 KMTAETPSGMMNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSGT 424
Query: 483 FGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
+G MG G+ + AA A G V+ ++GD +F + EL I N+PV ++++NN G
Sbjct: 425 WGVMGIGMGYCVAAA-AVTGKPVIAVEGDSAFGFSGMELETICRYNLPVTVIIMNNG--G 481
Query: 543 M-----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAA 597
+ + + L EA G +++AA
Sbjct: 482 IYKGNEADPQPGVI-----SCTRLTR--------GRYDMMMEAFGGKGYVANTPAELKAA 528
Query: 598 IQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILE 636
++ + + P L++ M+ V + + +
Sbjct: 529 LEEAVASGKPCLINAMIDPDAGVESGRIKSLNVVSKVGK 567
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami
diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia
coli} PDB: 2q27_A* 2q29_A*
Length = 564
Score = 668 bits (1725), Expect = 0.0
Identities = 122/576 (21%), Positives = 235/576 (40%), Gaps = 49/576 (8%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G IIVEAL++ + T++ G ++ + IR I RHEQ +AA +
Sbjct: 10 GMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQ 69
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRY 189
PG+CL S PG N +T L +A + P++ I+G + ++ ++E+ + +
Sbjct: 70 KPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKP 129
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLEL--AVPNWNQPCKLPS 247
K + V D+ + A ++ SGRPG V +D+P +V K+ +
Sbjct: 130 YAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTIVKVEN 189
Query: 248 CISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTM 305
S P ++ + L+ +++ P++ +G G S E+LR+F+ IP +M
Sbjct: 190 --PSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPMSM 247
Query: 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVH 365
G+ T L ++A+ D+++ G R N + + +A + +
Sbjct: 248 AKGILEDTHPLS-------AAAARSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQ 300
Query: 366 IDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF 425
+DI+ EI + V + D M L+ WR+ L+ K++
Sbjct: 301 LDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTFT---TPLVWRDILNIHKQQNAQ 357
Query: 426 SYKTFGEE----IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQ-FYMYKRARQLLTS 480
+ A+ + ++ + + I G + + + + R+ L
Sbjct: 358 KMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYKPRRRLDC 417
Query: 481 SGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540
+G MG G+ A+GA+V G+ VV I+GD +F + E+ I N+PV I++ NN
Sbjct: 418 GTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIFNNG- 475
Query: 541 LGM------NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV 594
G+ ++ + + L K +A VT ++
Sbjct: 476 -GIYRGDGVDLSGAGAP-----SPTDLLHH-------ARYDKLMDAFRGVGYNVTTTDEL 522
Query: 595 RAAIQLMLETPGPYLLDVMVSYQ-----EHVVPMIP 625
R A+ +++ P +++V++ H+ + P
Sbjct: 523 RHALTTGIQSRKPTIINVVIDPAAGTESGHITKLNP 558
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 667 bits (1723), Expect = 0.0
Identities = 123/566 (21%), Positives = 224/566 (39%), Gaps = 27/566 (4%)
Query: 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR--SNIRSILPRHEQGGIFAAE 124
D +++ LE G T++ P G + ++ +N++ + +HE+ G AA
Sbjct: 1 DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAV 60
Query: 125 GYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVV 184
++ G GV + S GPG ++++ GL DA D+IP++AI G Q+ L DAFQE+
Sbjct: 61 MQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQN 120
Query: 185 EVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELA--VPNWNQP 242
+ ++ +N V + +P+++ EA +A + R G ++++P D ++
Sbjct: 121 PMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQWYSSA 179
Query: 243 CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTC 302
L P P + ++L+ SK PV+ G G + +++ PV
Sbjct: 180 NSLR---KYAPIAPAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVIT 236
Query: 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRF-NERMTSKLEDFATRA 361
T F E G AN + E D +L AG F + F
Sbjct: 237 TGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEGT---FRNVD 293
Query: 362 KIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKK 421
+ IDID +GK DV+I DA L + + +++ ++A + + ++
Sbjct: 294 NFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDAVEES--AWWTANLKNIANWRE 351
Query: 422 KYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSS 481
++ +N D+ + I S VG +I+ TS
Sbjct: 352 YINMLETKEEGDLQFYQVYNAINNHADE-DAIYSIDVGNSTQTSIRHLHMTPKNMWRTSP 410
Query: 482 GFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYL 541
F +MG +P +GA P V +I GDG+F M ++ N+PV ++ +N
Sbjct: 411 LFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNTEY 470
Query: 542 GMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLM 601
++ + N D D K AEA G V++ +D+ +
Sbjct: 471 AF-IKNKYEDTNKNLFGVDFTD--------VDYAKIAEAQGAKGFTVSRIEDMDRVMAEA 521
Query: 602 LET---PGPYLLDVMVSYQEHVVPMI 624
+ ++D ++ +
Sbjct: 522 VAANKAGHTVVIDCKITQDRPIPVET 547
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 658 bits (1701), Expect = 0.0
Identities = 157/556 (28%), Positives = 246/556 (44%), Gaps = 24/556 (4%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYAR 128
+ A I + LE GV ++ G + + SL R I + RHE+ FAA A+
Sbjct: 3 QTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQ 62
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR 188
SG VC S GPG +++ GL D + + +P+LAI + +G+ FQE E+ R
Sbjct: 63 LSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFR 122
Query: 189 YMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSC 248
+ + LV + IP+++ A A R G ++ +P DV L+ A +
Sbjct: 123 ECSHYCELVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDVALKPAPEGA----TMHWY 177
Query: 249 ISSLPK-EPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGL 307
+ P P+E LR+ +L+ S N L G GC + +EL +F G P+ G
Sbjct: 178 HAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHALRGK 237
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
+ + M G+ G + + D L+ G +F R + T AKI+ ID
Sbjct: 238 EHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAF-----YPTDAKIIQID 292
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
I+ IG D+++ D K + ++E K E+ + +K
Sbjct: 293 INPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADR--KFLDKALEDYRDARKGLDDLA 350
Query: 428 KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMG 487
K + I PQY Q ++ D + I + VG +WA ++ R+LL S GSM
Sbjct: 351 KPSEKAIHPQYLAQQISHFAAD-DAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMA 409
Query: 488 FGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEY 547
+P A+GA P VV + GDG F M + + ++ +PVKI++ NN LG V
Sbjct: 410 NAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGF-VAM 468
Query: 548 EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGP 607
E + + L D + + AEACGI RV K +V A+Q GP
Sbjct: 469 EMKAGGYLTDGTELHD--------TNFARIAEACGITGIRVEKASEVDEALQRAFSIDGP 520
Query: 608 YLLDVMVSYQEHVVPM 623
L+DV+V+ +E +P
Sbjct: 521 VLVDVVVAKEELAIPP 536
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 652 bits (1684), Expect = 0.0
Identities = 105/557 (18%), Positives = 198/557 (35%), Gaps = 47/557 (8%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARS 129
E L RQG+ TVF PG ++ + + R IL E + A+GYA++
Sbjct: 2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDF-PEDFRYILALQEACVVGIADGYAQA 60
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAF-QEIPVVEVTR 188
S P + S G N M L +A++ P++ GQ ++ ++G +A + + R
Sbjct: 61 SRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPR 120
Query: 189 YMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSC 248
+ K +Y ++P + A +A+ GPV + +P D + A P
Sbjct: 121 PLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQS-HHLFDRH- 178
Query: 249 ISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTT-M 305
S ++ L +K + + NP + +G + + + PV
Sbjct: 179 -VSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSA 237
Query: 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAG---VRFNERMTSKLEDFATRAK 362
FP ++ G + + D++L G R+++ + +
Sbjct: 238 PRCPFPTRHPCFRGLMPA-GIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQY--LKPGTR 294
Query: 363 IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKK 422
++ + D E + + D +I AD + + + ++E
Sbjct: 295 LISVTCDPLEAARAPMGD-AIVADIGAMASALANLVE------------ESSRQLPTAAP 341
Query: 423 YPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSG 482
P + P+ LN++ + I Q + +
Sbjct: 342 EPAKVDQDAGRLHPETVFDTLNDMAPE-NAIYLNESTSTTAQMWQRLNMRNPGSYYFCAA 400
Query: 483 FGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
G +GF LPAA+G +A P V+ + GDGS ++ L NIP +++NN G
Sbjct: 401 -GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYG 459
Query: 543 M-----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAA 597
V + + D A+ G+ A + + ++ +
Sbjct: 460 ALRWFAGVLEAENV-----PGLDVPG--------IDFRALAKGYGVQALKADNLEQLKGS 506
Query: 598 IQLMLETPGPYLLDVMV 614
+Q L GP L++V
Sbjct: 507 LQEALSAKGPVLIEVST 523
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
{Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
2q5q_A*
Length = 565
Score = 620 bits (1601), Expect = 0.0
Identities = 117/594 (19%), Positives = 211/594 (35%), Gaps = 51/594 (8%)
Query: 51 STAPFQQTDFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IR 109
++ S K A+ ++ AL+ +G +F PG ++ + + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILP 61
Query: 110 SILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVS 169
HE FAA+ AR S T GV V+ G G N++ + AY++ P++ I+G
Sbjct: 62 LHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPG 121
Query: 170 QKLL--GTDAFQEIPVVEVTRYM----TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVL 223
G + ++ + T + D P I A + PV
Sbjct: 122 TTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAAR-AQSRPVY 180
Query: 224 IDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL 283
++IP ++ P + P ++ + L + + +PVL V
Sbjct: 181 LEIPRNMVNAEVEPVGDDPAWPV------DRDALAACADEVLAAMRSATSPVLMVCVEVR 234
Query: 284 NS--SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVNECDLLL 340
++ + G+PV T MG GL L +G+ G V E D L
Sbjct: 235 RYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLF 294
Query: 341 AAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400
G ++ + + K +H + +G D+ + + R+
Sbjct: 295 LLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTLGYHTYADIPLAGLVDALLERLP----- 349
Query: 401 KGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELT--DDEETIISTGV 458
+ R ++ YP + GE I P + +N+ E +I+ +
Sbjct: 350 ---------PSDRTTRGKEPHAYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADM 400
Query: 459 GQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNL 518
G A+ L+ + MGFG+PA +GA + G ++ + GDG+F M
Sbjct: 401 GDCLFTAMDMI----DAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTG 456
Query: 519 QELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFA 578
EL + I ++L NN M + R F+ A + L D A
Sbjct: 457 WELGNCRRLGIDPIVILFNNASWEM-L----RTFQPESAFNDLDD--------WRFADMA 503
Query: 579 EACGIPAARVTKKKDVRAAIQLMLETPG-PYLLDVMVSYQEHVVPMIPYDKSFK 631
G RV + +++AA+ T G L++ M+ + + + K
Sbjct: 504 AGMGGDGVRVRTRAELKAALDKAFATRGRFQLIEAMIPRGVLSDTLARFVQGQK 557
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 508 bits (1310), Expect = e-175
Identities = 109/584 (18%), Positives = 204/584 (34%), Gaps = 56/584 (9%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARS 129
+ E L + G+ FA G ++ + L + +++ I +E F+AEGYARS
Sbjct: 4 TVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARS 63
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEI-------- 181
+G +V+ G + M L AY++++P++ I+G + GT
Sbjct: 64 NGA-AAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYS 122
Query: 182 PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQ 241
+E+ R +T + D P I A R P +DI ++ E V
Sbjct: 123 YQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERK-PAYLDIACNIASEPCVRPGPV 181
Query: 242 PCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIP 299
L + + A+ T+ L+ +S +PV+ +G N+
Sbjct: 182 SSLLSE--PEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCA 239
Query: 300 VTCTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA 358
VT G FP + G V D LL FN+ T +
Sbjct: 240 VTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWP 299
Query: 359 TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHE 418
++ + D + ++ + + ++ SA + +
Sbjct: 300 KGPNVILAEPDRVTVDGRAYDGFTL----RAFLQALAEKAPAR------PASAQKSSVPT 349
Query: 419 QKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
+ ++ +N L T + G A++ + + AR +
Sbjct: 350 CSLTATSD----EAGLTNDEIVRHINALLT-SNTTLVAETGDSWFNAMRMTLPRGAR-VE 403
Query: 479 TSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
+G +G+ +P+A G A+ + V + GDGSF + QE+A + +PV I LINN
Sbjct: 404 LEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLINN 463
Query: 539 QYLGMNVE-YEDRYFEANRANSFLGDPLRKSEIF-PDMLKFAEACGIP-----AARVTKK 591
+ + + ++ Y + I D E + T
Sbjct: 464 RGYVIEIAIHDGPY----------------NYIKNWDYAGLMEVFNAGEGHGLGLKATTP 507
Query: 592 KDVRAAIQLMLE-TPGPYLLDVMVSYQEHVVPMIPYDKSFKDTI 634
K++ AI T GP L++ + + ++ + + T
Sbjct: 508 KELTEAIARAKANTRGPTLIECQIDRTDCTDMLVQWGRKVASTN 551
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 502 bits (1295), Expect = e-173
Identities = 106/580 (18%), Positives = 202/580 (34%), Gaps = 64/580 (11%)
Query: 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGY 126
P AD +++ L G +F PG +++ + S +I + +E +AA+GY
Sbjct: 3 TPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGY 62
Query: 127 ARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQK----------LLGTD 176
AR G L + G G + M G+ +Y++ +P+L I G LG
Sbjct: 63 ARCKGF-AALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDG 121
Query: 177 AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAV 236
F+ ++ +T ++ + + I + + RPG +++ P DV + A
Sbjct: 122 EFRHF--YHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLML--PADVAKKAAT 177
Query: 237 PNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVG 294
P L + + + SK L L L+K+V
Sbjct: 178 P---PVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVK 234
Query: 295 LTGIPVTCTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVNECDLLLAAGVRFNERMTSK 353
+ MG G+F G T A+ D +L G RF + +T+
Sbjct: 235 EVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAG 294
Query: 354 LEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWR 413
T A+ + + + +G V + + + +
Sbjct: 295 FTHQLTPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQ-------------HVHA 341
Query: 414 EELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKR 473
+ PF + + + L II G AI +
Sbjct: 342 GLMSSSSGAIPFPQP--DGSLTQENFWRTLQTFIR-PGDIILADQGTSAFGAIDLRLPAD 398
Query: 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKI 533
+ +GS+G+ L AA GA A P V+ + GDG+ + +QEL ++ + I
Sbjct: 399 -VNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPII 457
Query: 534 LLINNQYLGMNV---EYEDRYFEANRANSFLGDPLRKSEI-FPDMLKFAEACGIP----A 585
L++NN+ + E RY ++I + +A +
Sbjct: 458 LVLNNEGYTVERAIHGAEQRY----------------NDIALWNWTHIPQALSLDPQSEC 501
Query: 586 ARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625
RV++ + + ++ + L++VM+ + + P++
Sbjct: 502 WRVSEAEQLADVLEKVAHHERLSLIEVMLP-KADIPPLLG 540
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 502 bits (1295), Expect = e-172
Identities = 108/586 (18%), Positives = 203/586 (34%), Gaps = 54/586 (9%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSS 130
+ E L + G+ FA G ++ + +L + N+ + +E F+AEGYAR+
Sbjct: 5 VGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAK 64
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVS-----QKLLGTDAFQEI---P 182
G +V+ G + + AY++++P++ I+G + + A +
Sbjct: 65 GA-AAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY 123
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
+E+ + +T + ++ P I A + PV ++I ++
Sbjct: 124 QLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKK-PVYLEIACNIASMPCAAPGPAS 182
Query: 243 CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPV 300
S + A+ +TLK I + VG + E KF G V
Sbjct: 183 ALFNDEAS--DEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAV 240
Query: 301 TCTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT 359
FP + + G + E D ++A FN+ T+ D
Sbjct: 241 ATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPD 300
Query: 360 RAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQ 419
K+V + S + ++ P V + K R+ + K + + L+
Sbjct: 301 PKKLVLAEPRSVVVNGIRFPSVHL----KDYLTRLAQKVSKKTGAL-----DFFKSLNAG 351
Query: 420 KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLT 479
+ K + + + L T + G A Q ++
Sbjct: 352 ELKKAAPADP-SAPLVNAEIARQVEALLT-PNTTVIAETGDSWFNA-QRMKLPNGARVEY 408
Query: 480 SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539
+G +G+ +PAA G AV P + + GDGSF + QE+A + +PV I LINN
Sbjct: 409 EMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNY 468
Query: 540 YLGMNVE-YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEA---------CGIPAARVT 589
+ V ++ Y N N D E +
Sbjct: 469 GYTIEVMIHDGPY--NNIKN-------------WDYAGLMEVFNGNGGYDSGAGKGLKAK 513
Query: 590 KKKDVRAAIQLMLETP-GPYLLDVMVSYQEHVVPMIPYDKSFKDTI 634
++ AI++ L GP L++ + ++ ++ + K
Sbjct: 514 TGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAAN 559
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein,
THDP-dependent enzymes, thiamine pyrophosphate, lyase;
HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Length = 570
Score = 490 bits (1264), Expect = e-168
Identities = 101/609 (16%), Positives = 215/609 (35%), Gaps = 69/609 (11%)
Query: 52 TAPFQQTDFSSRFAPDKPR-----KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR- 105
+ SS P D +++ L G+ +F PG +++ +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISR 61
Query: 106 SNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT 165
+++ I +E + A+GYAR+ L + G G + + GL +Y++++P++ I
Sbjct: 62 EDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELSAINGLAGSYAENLPVVEIV 120
Query: 166 GQVSQKLLGTDAFQEI--------PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217
G + K+ F +++ +T L+ + I + +
Sbjct: 121 GSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTAENATYEIDRVLSQLL--K 178
Query: 218 RPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPD----ELALRQTLKLIVESKN 273
PV I++PVDV + P+ ++ L + + + ++
Sbjct: 179 ERKPVYINLPVDVA--------AAKAEKPALSLEKESSTTNTTEQVILSKIEESLKNAQK 230
Query: 274 PVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRM-VGMFGTVYAN 330
PV+ G ++ + + +FV T +P+T G + L + G +
Sbjct: 231 PVVIAGHEVISFGLEKTVTQFVSETKLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLK 290
Query: 331 YAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLV 390
V D +L GV+ + T K++ ++ID I + D D + V
Sbjct: 291 NFVESADFILMLGVKLTDSSTGAFTHHLDENKMISLNIDEGIIFNKVVEDF----DFRAV 346
Query: 391 FNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDE 450
+ ++ + + + + +Q +++ S + Q + LT
Sbjct: 347 VSSLSELKGIE---------YEGQYIDKQYEEFIPS----SAPLSQDRLWQAVESLTQ-S 392
Query: 451 ETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG 510
I G A ++ +R + +GS+G+ PAA+G+ +A+ + + G
Sbjct: 393 NETIVAEQGTSFFGASTIFLKSNSR-FIGQPLWGSIGYTFPAALGSQIADKESRHLLFIG 451
Query: 511 DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEI 570
DGS + +QEL E + +INN + E N
Sbjct: 452 DGSLQLTVQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYNDIPM----------- 500
Query: 571 FPDMLKFAEACGIPAAR-----VTKKKDVRAAIQLMLETP-GPYLLDVMVSYQEHVVPMI 624
+ K E G R V + + + ++ Y +++++ ++ +
Sbjct: 501 -WNYSKLPETFGATEDRVVSKIVRTENEFVSVMKEAQADVNRMYWIELVLEKEDAPKLLK 559
Query: 625 PYDKSFKDT 633
K F +
Sbjct: 560 KMGKLFAEQ 568
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 484 bits (1248), Expect = e-165
Identities = 96/574 (16%), Positives = 189/574 (32%), Gaps = 50/574 (8%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSS 130
+ E L++ V TVF PG ++ + + +R +E +AA+GYAR
Sbjct: 6 LGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIK 65
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE--------IP 182
G + + G G + + G+ +Y++ + +L + G S
Sbjct: 66 GM-SCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTV 124
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
++ +++ ++ D+ P I + PV + +P ++ Q
Sbjct: 125 FHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQ-RPVYLGLPANLVDLNVPAKLLQT 183
Query: 243 CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPV 300
S + + E + L L ++KNPV+ C E +K + LT P
Sbjct: 184 PIDMSLKPNDAESEKE-VIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPA 242
Query: 301 TCTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT 359
T MG G + VG AV DL+L+ G ++ T
Sbjct: 243 FVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYK 302
Query: 360 RAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQ 419
IV D +I P V + + + + D + + +
Sbjct: 303 TKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTTIA------------DAAKGYKPVAVP 350
Query: 420 KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLT 479
+ + + ++ L E ++ G Q + ++
Sbjct: 351 ARTPANAAVPASTPLKQEWMWNQLGNFL-QEGDVVIAETGTSAFGINQTT-FPNNTYGIS 408
Query: 480 SSGFGSMGFGLPAAMGAAVA----NPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILL 535
+GS+GF A +GAA A +P V+ GDGS + +QE++ + + + +
Sbjct: 409 QVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFV 468
Query: 536 INNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP---AARVTKKK 592
+NN + + + + D L G RV
Sbjct: 469 LNNDGYTI----QKLIHGPKAQYNEIQG--------WDHLSLLPTFGAKDYETHRVATTG 516
Query: 593 DVRAAIQ--LMLETPGPYLLDVMVSYQEHVVPMI 624
+ Q + +++VM+ + ++
Sbjct: 517 EWDKLTQDKSFNDNSKIRMIEVMLPVFDAPQNLV 550
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate
synthase; menaquinone, THDP, Mg, vitamin K2,
carboxylase, magnesium; HET: AKG; 1.95A {Escherichia
coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Length = 556
Score = 362 bits (932), Expect = e-118
Identities = 85/568 (14%), Positives = 176/568 (30%), Gaps = 49/568 (8%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYAR 128
R+ A +I+EAL R GV + PG S + + S E+G A G A+
Sbjct: 8 RRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAK 67
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR 188
S P +V+SG V N+ L++A ++ +T +L+ A Q I +
Sbjct: 68 VSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFA 127
Query: 189 YMTKHNY-LVLDVDDIPR--IIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCK- 244
H+ L DIP ++ + G V I+ P L + + +
Sbjct: 128 SHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPLYGEMDDTGLSWQQ 187
Query: 245 -----LPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIP 299
L + P + +Q K V+ G +++ + G P
Sbjct: 188 RLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMSAEEGKKVALWAQTLGWP 247
Query: 300 VTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT 359
+ + P G A + + +++ G + + +
Sbjct: 248 LIGDVLSQTGQPLPC-----ADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCE 302
Query: 360 RAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQ 419
+ +D + + A+ W E+
Sbjct: 303 PEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAE----------KRQPWCVEIPRL 352
Query: 420 KKKYPFSYKTFGEEIPPQYAIQILNE-LTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
++ + + + + L + + + + + A +
Sbjct: 353 AEQAMQAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDA--LSQLPAGYPVY 410
Query: 479 TSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
++ G + L A G A G + I GD S + +L LA ++ + P+ ++++NN
Sbjct: 411 SNRGASGIDGLLSTAAGVQRA-SGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVVNN 469
Query: 539 Q------YLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKK 592
L +R++ P A + R +
Sbjct: 470 NGGQIFSLLPTPQSERERFYLM---------PQN-----VHFEHAAAMFELKYHRPQNWQ 515
Query: 593 DVRAAIQLMLETPGPYLLDVMVSYQEHV 620
++ A TP +++++V+ +
Sbjct: 516 ELETAFADAWRTPTTTVIEMVVNDTDGA 543
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate
synthase; menaquinone biosynthesis, sephchc synthase,
structural genomics; 2.60A {Listeria monocytogenes}
Length = 578
Score = 350 bits (900), Expect = e-113
Identities = 91/571 (15%), Positives = 179/571 (31%), Gaps = 37/571 (6%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYAR 128
+E L + GV PG S + + ++ + E+ F A G A+
Sbjct: 11 TDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAK 70
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR 188
+S P V L +SG N + +A IP++ +T +L A Q + + +
Sbjct: 71 ASKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYG 130
Query: 189 YMTKHNYLVLDVDDIP-------RIIKEAFFIATSGRPGPVLIDIPVDVQLELAV---PN 238
K + ++ A IA GPV ++ P+ L + P
Sbjct: 131 SHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLREPLVPILEPSPF 190
Query: 239 WNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS-SEELRKFVGLTG 297
K E + + Q + K V VG + + G
Sbjct: 191 TATGKKHHHVHIYYTHEVLDDSSIQKMVTECTGKKGVFVVGPIDKKELEQPMVDLAKKLG 250
Query: 298 IPVTCTTM-GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLED 356
P+ + GL + DE+ + F ++++ G + +
Sbjct: 251 WPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWLE 310
Query: 357 FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREEL 416
+ + +D + +K I D + + + M + +AW
Sbjct: 311 QLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDDAK-----DAAWLNGW 365
Query: 417 HEQKKKYPFSYKTFGEEIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYM-YKR 473
K +I+ EL ++ + G ++ +
Sbjct: 366 TSYNKVAREIVLAEMANTTILEEGKIVAELRRLLPDKAGLFIGNSMPIRDVDTYFSQIDK 425
Query: 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKI 533
++L + G + + +A+GA+V + + GD SF ++ L K + + I
Sbjct: 426 KIKMLANRGANGIDGVVSSALGASVV--FQPMFLLIGDLSFYHDMNGLLMAKKYKMNLTI 483
Query: 534 LLINNQYLGM----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT 589
+++NN G+ E +YFE+ G D A
Sbjct: 484 VIVNNDGGGIFSFLPQANEPKYFES-----LFGTSTE-----LDFRFAAAFYDADYHEAK 533
Query: 590 KKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620
++ AI G +++V + E+
Sbjct: 534 SVDELEEAIDKASYHKGLDIIEVKTNRHENK 564
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate
synthase; transferase, metal-binding; HET: TPP; 2.35A
{Bacillus subtilis}
Length = 604
Score = 307 bits (789), Expect = 1e-96
Identities = 93/568 (16%), Positives = 184/568 (32%), Gaps = 37/568 (6%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYARSSG 131
++ G+T PG S + +I + E+ F A G A++
Sbjct: 34 IGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQ 93
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
P + + +SG N +++A+ +PI+ +T +L A Q I +
Sbjct: 94 RPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFV 153
Query: 192 KHNYLVLDVDDIP-------RIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCK 244
K ++ P + A A GPV +++P+ L + +
Sbjct: 154 KFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLREPLMPDLSDEPFGRM 213
Query: 245 LPSC---ISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS-SEELRKFVGLTGIPV 300
+ + + D +L +++ E++ ++ G ++ E + P+
Sbjct: 214 RTGRHVSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGELHSDADKENIIALSKALQYPI 273
Query: 301 TCTTM-GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT 359
+ L + F D+++ G +
Sbjct: 274 LADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLRPDVVIRFGPMPVSKPVFLWLKDDP 333
Query: 360 RAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQ 419
+ + ID D + I +A + + L + S W E+
Sbjct: 334 TIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAAT-----RSSEWLEKWQFV 388
Query: 420 KKKYPFSYKTFGEEIP--PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYK-RARQ 476
++ +T E +IL L + + + G F+ + R +
Sbjct: 389 NGRFREHLQTISSEDVSFEGNLYRILQHLVPE-NSSLFVGNSMPIRDVDTFFEKQDRPFR 447
Query: 477 LLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536
+ ++ G + + +AMG A V + GD SF +L L A K IP+ ++L+
Sbjct: 448 IYSNRGANGIDGVVSSAMGVCEG-TKAPVTLVIGDLSFYHDLNGLLAAKKLGIPLTVILV 506
Query: 537 NNQYLGM----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKK 592
NN G+ E +FE G P D A G +
Sbjct: 507 NNDGGGIFSFLPQASEKTHFE-----DLFGTPTG-----LDFKHAAALYGGTYSCPASWD 556
Query: 593 DVRAAIQLMLETPGPYLLDVMVSYQEHV 620
+ + A + PG +L+++ Q V
Sbjct: 557 EFKTAYAPQADKPGLHLIEIKTDRQSRV 584
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.0 bits (160), Expect = 2e-11
Identities = 71/560 (12%), Positives = 145/560 (25%), Gaps = 219/560 (39%)
Query: 182 PVVEVTRYMTKHNYLVLDVD-----DIPRI-----IKEAF-------FIATSGRPG---- 220
P + Y+ + + L D ++ R+ +++A + G G
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 221 ----PVLIDIPVDVQLELAV--------------------------PNWNQPCKLPSCIS 250
V + V +++ + PNW S I
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 251 SLPKEPDELALRQTLKLIVESKNPVLCVGGGCL------NSSEELRKFVGLTGIPVTC-- 302
L + LR +L+ CL +++ F ++C
Sbjct: 225 -LRIHSIQAELR---RLLKSKPYE------NCLLVLLNVQNAKAWNAF------NLSCKI 268
Query: 303 --TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATR 360
TT + TD L + +++ + L
Sbjct: 269 LLTTRFKQV---TDFLS-------AATTTHISLDHHSMT------LTPDEVKSL--LL-- 308
Query: 361 AKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGF-MFDFSAWREELHEQ 419
K + LP + +++I ES G +D W+ ++
Sbjct: 309 -KYLDCRPQ-------DLP-REVLTTNPRR---LSIIAESIRDGLATWDN--WKHVNCDK 354
Query: 420 KKK---------YPFSYKT-------FGEE--IPPQYAIQIL--NELTDDEETIISTGVG 459
P Y+ F IP + ++ + + D +++
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-LLSLIWFDVIKSDVMVVVN---- 409
Query: 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS--FIMN 517
+L S +V+ S I +
Sbjct: 410 ----------------KLHKYS-----------------------LVEKQPKESTISIPS 430
Query: 518 LQELAAIKAENIPV--KILLINNQYL--------GMNVEYEDRYFEANRANSFLG----- 562
+ +K EN + ++ + Y + Y D+YF S +G
Sbjct: 431 IYLELKVKLENEYALHRSIV--DHYNIPKTFDSDDLIPPYLDQYF-----YSHIGHHLKN 483
Query: 563 -DPLRKSEIFPDM---LKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYL--LDVMVSY 616
+ + +F + +F E K +R G L L + Y
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQ-----------K-IRHD-STAWNASGSILNTLQQLKFY 530
Query: 617 QEHVVPMIPYDKSFKDTILE 636
+ ++ P + + IL+
Sbjct: 531 KPYICDNDPKYERLVNAILD 550
Score = 41.8 bits (97), Expect = 7e-04
Identities = 78/513 (15%), Positives = 141/513 (27%), Gaps = 184/513 (35%)
Query: 92 PGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCL-----VSSGPGVTN 146
P S H S + I SI + E + ++ Y CL V +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYEN-------CLLVLLNVQN------ 255
Query: 147 IMTGLMDAYSDSIPILAITGQVS-QKLLGTDAFQEIPVVEVTRYMTKH-------NYLVL 198
+A++ S IL T L I + + +T YL
Sbjct: 256 --AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 199 DVDDIPRIIKEAF-----FIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLP 253
D+PR + IA S R G D NW
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWD------------NW-------------- 347
Query: 254 KEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRK-FVGLT----GIPVTCTTMGLG 308
K + L ++ + P E RK F L+ + + L
Sbjct: 348 KHVNCDKLTTIIESSLNVLEP------------AEYRKMFDRLSVFPPSAHIPTILLSL- 394
Query: 309 LFPCTDELCLRMVGMFGTVYANYAVNEC-DLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
++ + + +V VN+ L + + T + ++++
Sbjct: 395 IWFDVIKSDVMVV-----------VNKLHKYSLVE--KQPKESTISIPS-------IYLE 434
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
+ KVKL + + L +R I++ + FD + + +Y +S+
Sbjct: 435 L------KVKLEN-----EYAL--HRS--IVDHYNIPKTFD---SDDLIPPYLDQYFYSH 476
Query: 428 KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMG 487
+G H R + F
Sbjct: 477 ------------------------------IGHHLKNIEHPERMTLFRMVFLDFRF---- 502
Query: 488 FGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIK---AENIP-----VKIL----- 534
+ + + + GS + LQ+L K +N P V +
Sbjct: 503 ------LEQKIRHDS---TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 535 -----LINNQY-----LGMNVEYEDRYFEANRA 557
LI ++Y + + E E + EA++
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 36.4 bits (83), Expect = 0.034
Identities = 34/256 (13%), Positives = 68/256 (26%), Gaps = 79/256 (30%)
Query: 417 HEQKKKYPFS--YKTFGEEIPPQYAIQILNEL------TDDEETIISTGVGQHQMWAIQF 468
++ + K F + P+ +++L +L + S+ +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--- 230
Query: 469 YMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAEN 528
R+LL S + + +V+ N+Q A A N
Sbjct: 231 --QAELRRLLKSKPY-------ENCL---------LVLL---------NVQNAKAWNAFN 263
Query: 529 IPVKILLI-----------NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKF 577
+ KILL +++++ + S L L+ + P L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRPQDLP- 319
Query: 578 AEACGI-P------AARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMI-----P 625
E P A + +D A V ++ P
Sbjct: 320 REVLTTNPRRLSIIAESI---RDGLATWD--------NWKHVNCDKLTTIIESSLNVLEP 368
Query: 626 YD--KSFKD-TILEDD 638
+ K F ++
Sbjct: 369 AEYRKMFDRLSVFPPS 384
Score = 34.1 bits (77), Expect = 0.16
Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 33/103 (32%)
Query: 543 MNVEYED--RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQL 600
+Y+D FE ++F+ + ++ DM K + K+++
Sbjct: 14 HQYQYKDILSVFE----DAFVDN-FDCKDV-QDMPK----------SILSKEEIDH---- 53
Query: 601 MLETPGP-----YLLDVMVSYQEHVVPMIPYDKSFKDTILEDD 638
++ + L ++S QE +V + F + +L +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMV------QKFVEEVLRIN 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 2e-06
Identities = 41/183 (22%), Positives = 64/183 (34%), Gaps = 49/183 (26%)
Query: 11 FNTPKS-----PPTISRPLMPLPYSYNRIKKPSLHVTNSTLNIPTSTAPFQQ--TDFSSR 63
N K+ PP + L L + + K PS + S PF + FS+R
Sbjct: 371 VNGAKNLVVSGPP---QSLYGLNLTLRKAKAPS--------GLDQSRIPFSERKLKFSNR 419
Query: 64 FAP-DKP------RKGADIIVEALERQGVT--------TVFAYPGGASI-EIHQSLTRSN 107
F P P +D+I + L + V+ V+ G+ + + S++
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 108 IRSIL--PRH-EQGGIFAAE-----GYARSSGTPGV-CLVSS---GPGVTNIMTGLMDAY 155
+ I+ P E F A G G G+ L G GV I+ G +D
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFG---PGGASGLGVLTHRNKDGTGVRVIVAGTLDIN 536
Query: 156 SDS 158
D
Sbjct: 537 PDD 539
Score = 37.0 bits (85), Expect = 0.026
Identities = 39/281 (13%), Positives = 68/281 (24%), Gaps = 117/281 (41%)
Query: 321 VGMFG-TVYANYAV-----NECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIG 374
GM G +Y N D F+ I+ I + +N +
Sbjct: 1629 QGM-GMDLYKTSKAAQDVWNRADNHFKDTYGFS---------------ILDI-VINNPVN 1671
Query: 375 KVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEI 434
++ N MI E+ G + +E++E Y F E+
Sbjct: 1672 LTIHFGGE--KGKRIRENYSAMIFETIVDGKL-KTEKIFKEINEHSTSYTFR----SEK- 1723
Query: 435 PPQYAIQILNELTDDEET---IISTGVGQHQMWAIQFYMYKRARQL-------------- 477
+L+ T + T + + +++ L
Sbjct: 1724 ------GLLS-AT--QFTQPALTLMEKAAFEDL--------KSKGLIPADATFAGHSLGE 1766
Query: 478 ---LTSSGFGSMGF----------GL--------------PAAMGAAVANPGAIVVDIDG 510
L S M G+ M A+ NPG +
Sbjct: 1767 YAALASLA-DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM-IAI-NPGRVAASFSQ 1823
Query: 511 DGSFIMNLQELAAIKAE-----------NIPVKILLINNQY 540
+ LQ + + N+ N QY
Sbjct: 1824 EA-----LQYVVERVGKRTGWLVEIVNYNVE------NQQY 1853
Score = 35.0 bits (80), Expect = 0.10
Identities = 69/386 (17%), Positives = 112/386 (29%), Gaps = 156/386 (40%)
Query: 73 ADIIVEA------LERQGVTTVFAYPGGASIEIHQSLTRSNIR-------SI---LPRHE 116
D+I + L R + + G + I + L + SI P
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQG--LNILEWLENPSNTPDKDYLLSIPISCPLI- 241
Query: 117 QGGIFAAEGY---ARSSG-TPGVCLVSSGPGVTNIMTGLMDA----YSDS---------- 158
G+ Y A+ G TPG L S G T GL+ A +DS
Sbjct: 242 --GVIQLAHYVVTAKLLGFTPGE-LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 159 -IPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATS- 216
I +L G +A+ P + P I++++ + +
Sbjct: 299 AITVLFFIGVRCY-----EAY---PNTSLP----------------PSILEDS--LENNE 332
Query: 217 GRPGPVL--IDIPVDVQLELAVPNWNQPCKLP--SCIS-SL---PKE------PDEL-AL 261
G P P+L ++ + Q++ V N LP + SL K P L L
Sbjct: 333 GVPSPMLSISNLTQE-QVQDYVNKTNS--HLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 262 RQTL-KLIVESKN-------------------PVLC------------------VGGGCL 283
TL K S PV V
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 284 NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAG 343
++++++ IPV T G L + + R+ D ++
Sbjct: 450 FNAKDIQ-------IPVYDTFDGSDLRVLSGSISERI---------------VDCIIRLP 487
Query: 344 VRFNERMTSKLEDFATRAKIVHIDID 369
V++ T+ K HI +D
Sbjct: 488 VKWET---------TTQFKATHI-LD 503
Score = 31.6 bits (71), Expect = 1.1
Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 59/149 (39%)
Query: 76 IVEALERQGVT---TVFA------Y-----PGGA-SIE-----IHQSLTRSN-IRSILPR 114
E L+ +G+ FA Y SIE + R ++ +PR
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY---RGMTMQVAVPR 1799
Query: 115 HEQG----GIFA------------------AEGYARSSG---------TPGVCLVSSG-- 141
E G G+ A E + +G V++G
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL 1859
Query: 142 PGVTNIMTGLMDAY-SDSIPILAITGQVS 169
+ + +T +++ I I+ + +S
Sbjct: 1860 RAL-DTVTNVLNFIKLQKIDIIELQKSLS 1887
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 170
Score = 44.4 bits (104), Expect = 2e-05
Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 17/138 (12%)
Query: 241 QPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSS--EELRKFVGLTGI 298
+ +S P+ A K+I ++K P+L VG L+ + + K I
Sbjct: 9 KLFTSYGVNTSKAVSPEMAA-----KIISKAKRPLLMVGTLALDPELLDRVVKISKAANI 63
Query: 299 PVTCTTMGLGLFPCTDE----LCLRMVGMFGTVYANYAVN---ECDLLLAAGVRFN--ER 349
P+ T L + D + M+G + T ++ D+++ G + +
Sbjct: 64 PIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPGLDGNGNYDMIITIGFKKFYINQ 123
Query: 350 MTSKLEDFATRAKIVHID 367
+ S ++F+ K + I+
Sbjct: 124 VLSAAKNFSN-LKTIAIE 140
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural
genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Length = 174
Score = 40.9 bits (95), Expect = 3e-04
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 12/127 (9%)
Query: 253 PKEPDELALRQTL-KLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTT------M 305
PK L + + +I ++K P+L VG + E K I V T +
Sbjct: 16 PKMATLLEKGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRFI 75
Query: 306 GLGLFPCTDELCLRMVGMFGTVYANYAVN---ECDLLLAAGVRFN--ERMTSKLEDFATR 360
GL + L + F + DL+L G + +M + +++FA
Sbjct: 76 DAGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPH 135
Query: 361 AKIVHID 367
+ + ID
Sbjct: 136 IRALAID 142
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 39.3 bits (91), Expect = 0.004
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDG 512
G +G+ L A GA + NP V I GDG
Sbjct: 175 GELGYALSHAYGAVMNNPSLFVPCIIGDG 203
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 37.8 bits (87), Expect = 0.006
Identities = 23/127 (18%), Positives = 39/127 (30%), Gaps = 36/127 (28%)
Query: 366 IDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQK---KK 422
I ++ + K D A R + S EL + K KK
Sbjct: 120 IQVNYSSEVKENSVDSDDKAKVP-PLIR-----------IV---SGL--ELSDTKQKGKK 162
Query: 423 Y------PFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMW-------AIQFY 469
+ P ++ E+PP + N D+ + + W +QF
Sbjct: 163 FLVIAYEP--FENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQF- 219
Query: 470 MYKRARQ 476
+K+A Q
Sbjct: 220 FFKQAEQ 226
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.13
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 148 MTGLMDAYS-DSIPILAITGQV 168
+ + Y+ DS P LAI +
Sbjct: 25 LQASLKLYADDSAPALAIKATM 46
Score = 29.5 bits (65), Expect = 1.7
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 255 EPDELA-LRQTLKLIVESKNPVLCVGGGCLNSSEE 288
E L L+ +LKL + P L + ++ E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAI-----KATME 47
Score = 29.1 bits (64), Expect = 2.6
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 418 EQK--KKYPFSYKTFGEEIPPQYAIQ 441
E++ KK S K + ++ P AI+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
Score = 28.8 bits (63), Expect = 3.9
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 7/27 (25%)
Query: 244 KLPSCISSL-PKEPDE---LALRQTLK 266
KL + SL D LA++ T++
Sbjct: 24 KLQA---SLKLYADDSAPALAIKATME 47
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 33.4 bits (77), Expect = 0.18
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 23/98 (23%)
Query: 285 SSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDL------ 338
E L +F+G + T + D+ V + +A+ + E +
Sbjct: 63 DLENLDQFIGP-PLHDTFKE----YYKFEDKKAKEAVEKYREYFADKGIFENKIYENMKE 117
Query: 339 ----LLAAGVRFNERM---TSKLEDFATRAKIVHIDID 369
L G + TSK FA + + DID
Sbjct: 118 ILEMLYKNGK----ILLVATSKPTVFAETI-LRYFDID 150
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit,
somatic form; pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A
3exh_A* 3exg_A 3exf_A*
Length = 365
Score = 33.0 bits (76), Expect = 0.28
Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 45/150 (30%)
Query: 482 GFGSMGFGLPAAMGAAVA----NPGAIVVDIDGD-----GSF--IMNLQELAAIKAENIP 530
G G +G +P G A+A + + + GD G N +AA+ +P
Sbjct: 138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYN---MAALW--KLP 192
Query: 531 VKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK 590
+ NN+Y GM G + ++ D K + IP RV
Sbjct: 193 CIFICENNRY-GM------------------GTSVERAAASTDYYKRGD--FIPGLRV-D 230
Query: 591 KKDVRA-------AIQLMLETPGPYLLDVM 613
D+ A GP L+++
Sbjct: 231 GMDILCVREATRFAAAYCRSGKGPILMELQ 260
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 3.3
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 74 DIIVEALERQGVTT 87
+II E +E+ GV T
Sbjct: 683 NIIAEGIEKMGVRT 696
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 29.1 bits (66), Expect = 3.7
Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 43/123 (34%)
Query: 328 YANYAVNECDLLLAAGVRFNE--------RMTSKLEDFATRAKIVHIDIDSNEIGKVKLP 379
YA AV + A GVR + + +KL+D T KI +D + +
Sbjct: 21 YAQEAVKKGST--AVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALD---DNVCMA--- 72
Query: 380 DVS-ICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQY 438
+ + ADA++V NR R E + + + +Y
Sbjct: 73 -FAGLTADARIVINRA------------------RVECQSHRLTV-------EDPVTVEY 106
Query: 439 AIQ 441
+
Sbjct: 107 ITR 109
>3rmu_A Methylmalonyl-COA epimerase, mitochondrial; structural genomics
consortium, SGC, vitamin B12, mitochondr isomerase; HET:
PG4; 1.80A {Homo sapiens}
Length = 134
Score = 28.2 bits (63), Expect = 3.9
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 78 EALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGI 120
L GV+ VF G +E+ L S I L +++ GG+
Sbjct: 35 VPLPEHGVSVVFVNLGNTKMELLHPLGLDSPIAGFLQKNKAGGM 78
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 29.4 bits (67), Expect = 3.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 483 FGSMGFGLPAAMGAAVANPGA---IVVDID 509
+G+ GL A + A V GA I VDI
Sbjct: 197 WGAGAVGLSALLAAKVC--GASIIIAVDIV 224
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol
metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB:
1gn0_A
Length = 108
Score = 27.2 bits (61), Expect = 5.7
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 176 DAFQEIPVVEVTRYMTKHNYLVLDV 200
D F+ I V + + + + +++D+
Sbjct: 2 DQFECINVADAHQKLQEKEAVLVDI 26
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA
polymerase mRNA export; 1.74A {Encephalitozoon cuniculi}
PDB: 2xpo_A 2xpn_A 2xpl_A
Length = 145
Score = 27.7 bits (61), Expect = 6.6
Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 367 DIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFS 426
D +N G+ + + + + G + + W E L +
Sbjct: 24 DNANNLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPD-------- 75
Query: 427 YKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQM 463
K+ + + +L + +E ++++GVG+
Sbjct: 76 -KSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVY 111
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC
AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC
CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1
d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Length = 513
Score = 28.5 bits (64), Expect = 8.5
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 157 DSIPILAITGQVSQKL----LGTDAFQEIPVV-EVTRYM-TKHNYLVLDVDDIPRIIKEA 210
DS + A + + +L +GTD E V ++ T+H + + ++ + A
Sbjct: 253 DSSGVAACAHRAAGELDTVSMGTDTSNEFREARAVVDHLRTRHREITIPTTELLAQLPYA 312
Query: 211 FFIATSGRPGPVLIDIP 227
+ + S P + +P
Sbjct: 313 VWASESVDPDIIEYLLP 329
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,146,035
Number of extensions: 656199
Number of successful extensions: 2024
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1799
Number of HSP's successfully gapped: 60
Length of query: 643
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 543
Effective length of database: 3,909,693
Effective search space: 2122963299
Effective search space used: 2122963299
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)