BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040734
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PZ0|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) From T. Tengcongensis
pdb|2PZ0|B Chain B, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) From T. Tengcongensis
Length = 252
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 46 KFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFH 105
K LV+ HRG NV EN+IA+F + + D IE DVQ+TKDG V+ H
Sbjct: 11 KTLVIAHRGDSKNV-----------PENTIAAFKRAMELGADGIELDVQLTKDGHLVVIH 59
Query: 106 DDVIVSEDNGTIFEKRIT 123
D+ + NG F K T
Sbjct: 60 DETVDRTTNGEGFVKDFT 77
>pdb|3QVQ|A Chain A, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
pdb|3QVQ|B Chain B, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
pdb|3QVQ|C Chain C, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
pdb|3QVQ|D Chain D, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
Length = 252
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 136/301 (45%), Gaps = 59/301 (19%)
Query: 38 KSASFRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTK 97
+SA +P+ V+ HRG SS + EN++AS + + + + ++E DV ++
Sbjct: 3 QSAYSFLPQ--VIAHRG-------SSGQA----PENTLASLHLAGQQGIKWVEIDVXLSG 49
Query: 98 DGWPVIFHDDVI--VSEDNGTIFEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKI 155
DG PVIFHDD + ++ +G I++ + EL + S+ Q Q
Sbjct: 50 DGIPVIFHDDYLSRTTDGDGLIYKTPLAELKQLDAGSWKGQEYQ---------------- 93
Query: 156 LHWNVEIDDSLCTLQEAFQQVDP-NVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFA 214
+++ TL EA + + G N+ELK + + E++ + ++ + + +
Sbjct: 94 -------QETIPTLLEAIEVISQYGXGLNLELKPCEGL--EEETIAASVEVLKQ---HWP 141
Query: 215 ENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQG 274
++ P++FS+F A V + L +P EI +++ A + LE L
Sbjct: 142 QDLPLLFSSFNYFALVSAKAL---WP---------EIARGYNVSAIPSAWQERLE-HLDC 188
Query: 275 IVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEA 334
+ F + V+ IK + +L + +N+ + A+ + + G+D V D Q+I A
Sbjct: 189 AGLHIHQSFFDVQQVSDIKAAGYKVLAF-TINDESLALKLYN-QGLDAVFSDYPQKIQSA 246
Query: 335 V 335
+
Sbjct: 247 I 247
>pdb|3MZ2|A Chain A, Crystal Structure Of A Glycerophosphoryl Diester
Phosphodiesterase (Bdi_3922) From Parabacteroides
Distasonis Atcc 8503 At 1.55 A Resolution
pdb|3MZ2|B Chain B, Crystal Structure Of A Glycerophosphoryl Diester
Phosphodiesterase (Bdi_3922) From Parabacteroides
Distasonis Atcc 8503 At 1.55 A Resolution
Length = 292
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 40 ASFRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDG 99
A RIP L+ GHRG R + ENS +F ++ Y E D ++TKD
Sbjct: 27 ADDRIP--LISGHRG----------GRGKGYPENSXETFENTLSYTPATFEIDPRLTKDS 74
Query: 100 WPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGPQREQGKI 142
V+FHDD + NGT ++++ + E ++ + +G I
Sbjct: 75 VIVLFHDDTLERTSNGT---GKVSDYTWEELQNFRLKDPEGNI 114
>pdb|3I10|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (Np_812074.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.35 A Resolution
Length = 278
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 46 KFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFH 105
K LVV HRG+ ++ ENS A+ +S+ +D +E D+Q TKDG ++ H
Sbjct: 17 KVLVVAHRGN-----------WRSAPENSTAAIDSAIAXKVDIVEIDIQKTKDGQLILXH 65
Query: 106 DDVIVSEDNGTIFEKRITELSLSEF 130
D+ + D T + I +L++
Sbjct: 66 DNTL---DRTTTGKGEIKNWTLADI 87
>pdb|2OTD|A Chain A, The Crystal Structure Of The Glycerophosphodiester
Phosphodiesterase From Shigella Flexneri 2a
pdb|2OTD|B Chain B, The Crystal Structure Of The Glycerophosphodiester
Phosphodiesterase From Shigella Flexneri 2a
pdb|2OTD|C Chain C, The Crystal Structure Of The Glycerophosphodiester
Phosphodiesterase From Shigella Flexneri 2a
pdb|2OTD|D Chain D, The Crystal Structure Of The Glycerophosphodiester
Phosphodiesterase From Shigella Flexneri 2a
Length = 247
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 45 PKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIF 104
P +V HRG G + EN++A+ + AKY IEFD +++KDG +
Sbjct: 5 PYPRIVAHRGGG-----------KLAPENTLAAIDVGAKYGHKXIEFDAKLSKDGEIFLL 53
Query: 105 HDDVIVSEDNG 115
HDD + NG
Sbjct: 54 HDDNLERTSNG 64
>pdb|1O1Z|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) (Tm1621) From Thermotoga
Maritima At 1.60 A Resolution
Length = 234
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 60/182 (32%)
Query: 48 LVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDD 107
+V+GHRG+ L EN++ +F + + + +E DV+++KDG V+ HD
Sbjct: 14 IVLGHRGYSAKYL-----------ENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHD- 61
Query: 108 VIVSEDNGTIF--EKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDS 165
ED +F + +I + ++SE L++ DGKI
Sbjct: 62 ----EDLKRLFGLDVKIRDATVSE-----------------LKELTDGKI---------- 90
Query: 166 LCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQ 225
TL+E F+ V + N+E+K E++ A+L+I + + +IFS+F
Sbjct: 91 -TTLKEVFENVSDDKIINIEIK-------ERE----AADAVLEIS---KKRKNLIFSSFD 135
Query: 226 PD 227
D
Sbjct: 136 LD 137
>pdb|2O55|A Chain A, Crystal Structure Of A Putative Glycerophosphodiester
Phosphodiesterase From Galdieria Sulphuraria
Length = 258
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 17/95 (17%)
Query: 39 SASFRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKD 98
S+ IPK +VGHRG G L EN++ SF + + +IE D++V K
Sbjct: 1 SSKVIIPK--IVGHRGVGKEGLAP---------ENTLRSFVLCXERNIPYIETDLRVCKT 49
Query: 99 GWPVIFH---DDVIVSEDNGTIFEKRITELSLSEF 130
G V+FH + I +GT RI +LSL E
Sbjct: 50 GEIVLFHGTPEGTIPFYKDGT---SRIGDLSLEEL 81
>pdb|2OOG|A Chain A, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|B Chain B, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|C Chain C, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|D Chain D, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|E Chain E, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|F Chain F, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|A Chain A, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|B Chain B, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|C Chain C, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|D Chain D, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|E Chain E, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|F Chain F, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|G Chain G, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|H Chain H, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
Length = 287
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 45/181 (24%)
Query: 15 DQVPESPSLTRFSTSFSSCLEMNKSASFRIPKFLVVGHRGHG----MNVLQSSDKRMQAI 70
+Q+ P ++ T+ ++ +F + HRG + Q+ DK +
Sbjct: 4 NQIANKPQAIQWHTNLTN------------ERFTTIAHRGASGYAPEHTFQAYDKSHNEL 51
Query: 71 KENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEF 130
K + +IE D+Q TKDG V HD+ + NG ++ + +L E
Sbjct: 52 KAS--------------YIEIDLQRTKDGHLVAMHDETVNRTTNG---HGKVEDYTLDEL 94
Query: 131 LSYGPQREQGKIGKSLLRK-TKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFD 189
+Q G +K K + + N ++ TL E ++ PN + +E K
Sbjct: 95 -------KQLDAGSWFNKKYPKYARASYKNAKV----PTLDEILERYGPNANYYIETKSP 143
Query: 190 D 190
D
Sbjct: 144 D 144
>pdb|3CJP|A Chain A, Crystal Structure Of An Uncharacterized Amidohydrolase
Cac3332 From Clostridium Acetobutylicum
pdb|3CJP|B Chain B, Crystal Structure Of An Uncharacterized Amidohydrolase
Cac3332 From Clostridium Acetobutylicum
Length = 272
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 192 IVYEQDYLIRVIQAILKIVFEFAENRPIIFST-FQPDAAVLIRKLQSTYPVFF-LTNGGT 249
I+ ++I ++ +KI+ E ++ I+FST P+ AV +R ++ + NG T
Sbjct: 4 IIDGHTHVILPVEKHIKIMDEAGVDKTILFSTSIHPETAVNLRDVKKEMKKLNDVVNGKT 63
Query: 250 EIFYDVRRNSLEEAVKV 266
DVRRNS++E V
Sbjct: 64 NSMIDVRRNSIKELTNV 80
>pdb|1V8E|A Chain A, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Thermus Thermophilus Hb8
pdb|1VD6|A Chain A, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase Complexed With Glycerol
Length = 224
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 48 LVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHD 106
L +GHRG + KEN++ SF + + LD +E DV T+DG + HD
Sbjct: 9 LRLGHRGAPLKA-----------KENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHD 56
>pdb|1ZCC|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|B Chain B, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|C Chain C, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|D Chain D, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|E Chain E, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|F Chain F, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
Length = 248
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 72 ENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGT 116
EN+ A+ + + + D+IE DV+ + DG + HD+ + NGT
Sbjct: 16 ENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTNGT 60
>pdb|2VWS|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWT|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
Length = 267
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 133 YGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTL 169
Y P E+G +G S+ R + G+I ++ +++DSLC L
Sbjct: 114 YPPYGERG-VGASVARAARWGRIENYMAQVNDSLCLL 149
>pdb|3CH0|A Chain A, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase (Yp_677622.1) From Cytophaga
Hutchinsonii Atcc 33406 At 1.50 A Resolution
Length = 272
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 47 FLVVGHRG-HGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFH 105
F + GHRG G+ + EN+IA+F + + +EFD+ ++KD V+ H
Sbjct: 9 FDIQGHRGCRGL------------LPENTIAAFTKALLLGVTTLEFDLVISKDNRVVVSH 56
Query: 106 DDVIVSEDNGTIFEKRITELSLSEFLSYG 134
D E + + +TE + F Y
Sbjct: 57 DTFFHHEITXXVDGEDVTEANEKNFNLYA 85
>pdb|3NO3|A Chain A, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase (Bdi_0402) From Parabacteroides
Distasonis Atcc 8503 At 1.89 A Resolution
Length = 238
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDV 108
V+ HRG+ + + +NSI S +++ EFDV +T D V++HD+
Sbjct: 7 VIAHRGYW---------KTEGSAQNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDND 57
Query: 109 IVSEDNGTIFEKRITELSLS 128
I + + + +L LS
Sbjct: 58 IQGKHIQSCTYDELKDLQLS 77
>pdb|3KS5|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 2.05 A Resolution
pdb|3KS5|B Chain B, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 2.05 A Resolution
pdb|3KS6|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 1.80 A Resolution
pdb|3KS6|B Chain B, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 1.80 A Resolution
pdb|3KS6|C Chain C, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 1.80 A Resolution
pdb|3KS6|D Chain D, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 1.80 A Resolution
Length = 250
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 78 FNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI--VSEDNGTIFEKRITELSLSEFLSYG 134
F ++A L+ +EFD+ T DG V+ HD + ++ G I + + ++ + + YG
Sbjct: 23 FTATAAXALEEVEFDLHPTADGAIVVHHDPTLDATTDXTGAIVDXTLAKVKTAT-IRYG 80
>pdb|3L12|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (Yp_165505.1) From Silicibacter
Pomeroyi Dss-3 At 1.60 A Resolution
pdb|3L12|B Chain B, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (Yp_165505.1) From Silicibacter
Pomeroyi Dss-3 At 1.60 A Resolution
Length = 313
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHD 106
V+GHRG EN++ F + + +EFDV T DG PV+ H+
Sbjct: 20 VIGHRG-----------ARGVXPENTLEGFAFTLAAGVRALEFDVVXTADGVPVVTHN 66
>pdb|3TTO|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|B Chain B, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|C Chain C, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|D Chain D, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTQ|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Orthorhombic Apo-Form At 1.9 Angstrom Resolution
Length = 1108
Score = 28.5 bits (62), Expect = 6.7, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 73 NSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELS--LSEF 130
+ +A+FNS + P + T D + F + I +DN I ++S L+ +
Sbjct: 745 DGLATFNSD-QAPTAW-------TNDQGTLTFSNQEINGQDNTQIRGVANPQVSGYLAVW 796
Query: 131 LSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVEL 186
+ G Q + + DGK+LH N +D +L + E F P + EL
Sbjct: 797 VPVGASDNQDARTAATTTENHDGKVLHSNAALDSNL--IYEGFSNFQPKATTHDEL 850
>pdb|2HXC|A Chain A, Crystal Structure Of The Benzylamine Complex Of Aromatic
Amine Dehydrogenase In N-Semiquinone Form
pdb|2HXC|B Chain B, Crystal Structure Of The Benzylamine Complex Of Aromatic
Amine Dehydrogenase In N-Semiquinone Form
pdb|2I0R|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Formamide Adduct
pdb|2I0R|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Formamide Adduct
Length = 361
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 19/75 (25%)
Query: 101 PVIFHDDVIVSEDNG-----TIFEKRIT--------------ELSLSEFLSYGPQREQGK 141
P F+ V VS D T + +RIT +L+ + +S P+R QG
Sbjct: 48 PTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 107
Query: 142 IGKSLLRKTKDGKIL 156
L R+T DGK +
Sbjct: 108 NYDGLFRQTTDGKFI 122
>pdb|2I0S|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct
pdb|2I0S|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct
Length = 360
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 19/75 (25%)
Query: 101 PVIFHDDVIVSEDNG-----TIFEKRIT--------------ELSLSEFLSYGPQREQGK 141
P F+ V VS D T + +RIT +L+ + +S P+R QG
Sbjct: 47 PTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 106
Query: 142 IGKSLLRKTKDGKIL 156
L R+T DGK +
Sbjct: 107 NYDGLFRQTTDGKFI 121
>pdb|2Q7Q|A Chain A, Crystal Structure Of Alcaligenes Faecalis Aadh In Complex
With P- Chlorobenzylamine.
pdb|2Q7Q|B Chain B, Crystal Structure Of Alcaligenes Faecalis Aadh In Complex
With P- Chlorobenzylamine
Length = 361
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 19/75 (25%)
Query: 101 PVIFHDDVIVSEDNG-----TIFEKRIT--------------ELSLSEFLSYGPQREQGK 141
P F+ V VS D T + +RIT +L+ + +S P+R QG
Sbjct: 48 PTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 107
Query: 142 IGKSLLRKTKDGKIL 156
L R+T DGK +
Sbjct: 108 NYDGLFRQTTDGKFI 122
>pdb|2H3X|A Chain A, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dehydrogenase And Azurin From Alcaligenes
Faecalis (Form 3)
pdb|2H3X|D Chain D, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dehydrogenase And Azurin From Alcaligenes
Faecalis (Form 3)
pdb|2H47|A Chain A, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|D Chain D, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|F Chain F, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|H Chain H, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2IAA|A Chain A, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (form 2)
pdb|2IAA|D Chain D, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (form 2)
Length = 390
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 19/75 (25%)
Query: 101 PVIFHDDVIVSEDNG-----TIFEKRIT--------------ELSLSEFLSYGPQREQGK 141
P F+ V VS D T + +RIT +L+ + +S P+R QG
Sbjct: 77 PTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 136
Query: 142 IGKSLLRKTKDGKIL 156
L R+T DGK +
Sbjct: 137 NYDGLFRQTTDGKFI 151
>pdb|2AGL|A Chain A, Crystal Structure Of The Phenylhydrazine Adduct Of
Aromatic Amine Dehydrogenase From Alcaligenes Faecalis
pdb|2AGL|B Chain B, Crystal Structure Of The Phenylhydrazine Adduct Of
Aromatic Amine Dehydrogenase From Alcaligenes Faecalis
pdb|2AGW|A Chain A, Crystal Structure Of Tryptamine-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2AGW|B Chain B, Crystal Structure Of Tryptamine-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2AGX|A Chain A, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. P212121 Form
pdb|2AGX|B Chain B, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. P212121 Form
pdb|2AGY|A Chain A, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. Monoclinic Form
pdb|2AGY|B Chain B, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. Monoclinic Form
pdb|2AGZ|A Chain A, Crystal Structure Of The Carbinolamine Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. F222 Form
pdb|2AGZ|B Chain B, Crystal Structure Of The Carbinolamine Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. F222 Form
pdb|2AH0|A Chain A, Crystal Structure Of The Carbinolamine Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. Monoclinic Form
pdb|2AH0|B Chain B, Crystal Structure Of The Carbinolamine Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. Monoclinic Form
pdb|2AH1|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase (Aadh)
From Alcaligenes Faecalis
pdb|2AH1|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase (Aadh)
From Alcaligenes Faecalis
pdb|2IUP|A Chain A, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis
pdb|2IUP|B Chain B, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis
pdb|2IUQ|A Chain A, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2IUQ|B Chain B, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2IUR|A Chain A, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form A
Cocrystal
pdb|2IUR|B Chain B, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form A
Cocrystal
pdb|2IUV|A Chain A, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form B
pdb|2IUV|B Chain B, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form B
pdb|2OK4|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct Oxidized With Ferricyanide
pdb|2OK4|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct Oxidized With Ferricyanide
pdb|2I0T|A Chain A, Crystal Structure Of Phenylacetaldehyde Derived R-
Carbinolamine Adduct Of Aromatic Amine Dehydrogenase
pdb|2I0T|B Chain B, Crystal Structure Of Phenylacetaldehyde Derived R-
Carbinolamine Adduct Of Aromatic Amine Dehydrogenase
pdb|2OIZ|A Chain A, Crystal Structure Of The Tryptamine-Derived
(Indol-3-Acetamide)-Ttq Adduct Of Aromatic Amine
Dehydrogenase
pdb|2OIZ|B Chain B, Crystal Structure Of The Tryptamine-Derived
(Indol-3-Acetamide)-Ttq Adduct Of Aromatic Amine
Dehydrogenase
pdb|2OK6|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase
Ttq-Formamide Adduct Oxidized With Ferricyanide.
pdb|2OK6|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase
Ttq-Formamide Adduct Oxidized With Ferricyanide.
pdb|2HJ4|A Chain A, Crystal Structure Of Alcaligenes Faecalis Aadh Complex
With P- Nitrobenzylamine
pdb|2HJ4|B Chain B, Crystal Structure Of Alcaligenes Faecalis Aadh Complex
With P- Nitrobenzylamine
pdb|2HJB|A Chain A, Crystal Structure Of Alcaligenes Faecalis Aadh In Complex
With P- Methoxybenzylamine
pdb|2HJB|B Chain B, Crystal Structure Of Alcaligenes Faecalis Aadh In Complex
With P- Methoxybenzylamine
Length = 361
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 19/75 (25%)
Query: 101 PVIFHDDVIVSEDNG-----TIFEKRIT--------------ELSLSEFLSYGPQREQGK 141
P F+ V VS D T + +RIT +L+ + +S P+R QG
Sbjct: 48 PTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 107
Query: 142 IGKSLLRKTKDGKIL 156
L R+T DGK +
Sbjct: 108 NYDGLFRQTTDGKFI 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,384,527
Number of Sequences: 62578
Number of extensions: 418769
Number of successful extensions: 1020
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 24
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)