Query 040734
Match_columns 361
No_of_seqs 173 out of 1185
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:14:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08605 GDPD_GDE5_like_1_plant 100.0 1.3E-51 2.8E-56 388.2 28.5 274 49-328 2-282 (282)
2 cd08580 GDPD_Rv2277c_like Glyc 100.0 7.6E-52 1.6E-56 383.5 18.5 246 47-331 1-263 (263)
3 cd08601 GDPD_SaGlpQ_like Glyce 100.0 3.7E-50 8.1E-55 373.2 27.4 246 48-335 2-255 (256)
4 PRK09454 ugpQ cytoplasmic glyc 100.0 4.5E-50 9.8E-55 371.0 26.6 237 45-334 6-245 (249)
5 cd08572 GDPD_GDE5_like Glycero 100.0 1.3E-49 2.8E-54 375.6 27.8 272 48-328 1-293 (293)
6 cd08606 GDPD_YPL110cp_fungi Gl 100.0 2.2E-49 4.9E-54 373.7 29.2 266 47-336 2-285 (286)
7 cd08612 GDPD_GDE4 Glycerophosp 100.0 7.5E-50 1.6E-54 378.9 25.9 250 45-336 25-299 (300)
8 cd08564 GDPD_GsGDE_like Glycer 100.0 2E-49 4.3E-54 370.0 26.8 247 45-335 2-264 (265)
9 cd08562 GDPD_EcUgpQ_like Glyce 100.0 1.7E-49 3.7E-54 362.6 25.5 227 49-328 1-229 (229)
10 cd08568 GDPD_TmGDE_like Glycer 100.0 1.2E-49 2.6E-54 363.1 24.2 220 48-330 1-225 (226)
11 cd08610 GDPD_GDE6 Glycerophosp 100.0 4.1E-49 9E-54 373.3 26.6 256 43-338 19-285 (316)
12 cd08607 GDPD_GDE5 Glycerophosp 100.0 6.8E-49 1.5E-53 371.2 27.2 267 48-328 1-290 (290)
13 cd08581 GDPD_like_1 Glyceropho 100.0 5.5E-49 1.2E-53 359.1 24.7 227 49-328 1-229 (229)
14 cd08565 GDPD_pAtGDE_like Glyce 100.0 6.3E-49 1.4E-53 360.1 25.0 232 49-331 1-234 (235)
15 cd08574 GDPD_GDE_2_3_6 Glycero 100.0 6.5E-49 1.4E-53 363.7 24.8 239 46-327 1-252 (252)
16 cd08563 GDPD_TtGDE_like Glycer 100.0 1.4E-48 2.9E-53 357.2 25.9 229 47-328 1-230 (230)
17 cd08609 GDPD_GDE3 Glycerophosp 100.0 1.7E-48 3.6E-53 369.4 26.5 248 46-338 26-285 (315)
18 cd08608 GDPD_GDE2 Glycerophosp 100.0 1.9E-48 4.1E-53 372.7 26.6 250 46-338 1-263 (351)
19 cd08582 GDPD_like_2 Glyceropho 100.0 1.8E-48 3.8E-53 357.1 24.5 230 49-329 1-232 (233)
20 cd08559 GDPD_periplasmic_GlpQ_ 100.0 8E-49 1.7E-53 371.2 22.2 255 47-328 1-296 (296)
21 cd08575 GDPD_GDE4_like Glycero 100.0 1E-48 2.3E-53 364.7 19.2 248 47-330 1-263 (264)
22 cd08579 GDPD_memb_like Glycero 100.0 7.5E-48 1.6E-52 350.0 23.7 219 49-328 1-220 (220)
23 cd08567 GDPD_SpGDE_like Glycer 100.0 1.7E-47 3.7E-52 356.5 25.1 250 48-330 2-263 (263)
24 cd08573 GDPD_GDE1 Glycerophosp 100.0 2.7E-47 5.9E-52 353.8 25.4 235 49-327 1-257 (258)
25 cd08561 GDPD_cytoplasmic_ScUgp 100.0 1.7E-46 3.7E-51 347.3 26.2 244 49-335 1-249 (249)
26 cd08600 GDPD_EcGlpQ_like Glyce 100.0 6E-47 1.3E-51 360.8 21.8 260 47-329 1-318 (318)
27 cd08571 GDPD_SHV3_plant Glycer 100.0 6.4E-47 1.4E-51 358.1 21.7 256 47-334 1-302 (302)
28 cd08566 GDPD_AtGDE_like Glycer 100.0 2.8E-46 6.1E-51 343.7 24.6 225 48-328 1-240 (240)
29 cd08604 GDPD_SHV3_repeat_2 Gly 100.0 2.5E-46 5.4E-51 354.0 24.3 257 47-334 1-300 (300)
30 cd08560 GDPD_EcGlpQ_like_1 Gly 100.0 7.4E-46 1.6E-50 355.8 26.1 286 30-334 5-353 (356)
31 PRK11143 glpQ glycerophosphodi 100.0 1.8E-45 3.9E-50 354.3 26.0 272 43-337 23-353 (355)
32 cd08570 GDPD_YPL206cp_fungi Gl 100.0 2E-45 4.3E-50 337.1 25.1 223 49-328 1-234 (234)
33 cd08602 GDPD_ScGlpQ1_like Glyc 100.0 2.2E-45 4.8E-50 348.7 24.3 251 47-328 1-309 (309)
34 cd08583 PI-PLCc_GDPD_SF_unchar 100.0 6.8E-45 1.5E-49 334.2 25.8 231 49-329 1-236 (237)
35 cd08585 GDPD_like_3 Glyceropho 100.0 4.4E-44 9.5E-49 328.3 24.6 229 46-325 3-236 (237)
36 cd08613 GDPD_GDE4_like_1 Glyce 100.0 8.4E-44 1.8E-48 332.5 25.3 252 43-331 20-307 (309)
37 PF03009 GDPD: Glycerophosphor 100.0 3.6E-41 7.9E-46 310.2 21.6 244 52-330 1-256 (256)
38 COG0584 UgpQ Glycerophosphoryl 100.0 6.7E-40 1.5E-44 304.5 24.5 247 46-337 5-256 (257)
39 cd08603 GDPD_SHV3_repeat_1 Gly 100.0 1.7E-39 3.7E-44 303.0 22.8 250 47-333 1-298 (299)
40 cd08556 GDPD Glycerophosphodie 100.0 8.1E-39 1.7E-43 282.9 23.5 189 49-327 1-189 (189)
41 cd08578 GDPD_NUC-2_fungi Putat 100.0 1.9E-38 4E-43 297.8 22.5 242 74-328 17-297 (300)
42 cd08555 PI-PLCc_GDPD_SF Cataly 100.0 9E-35 1.9E-39 255.9 18.2 168 49-327 1-179 (179)
43 cd08584 PI-PLCc_GDPD_SF_unchar 99.9 9.4E-23 2E-27 178.0 18.4 177 73-330 7-191 (192)
44 KOG2258 Glycerophosphoryl dies 99.8 6.4E-21 1.4E-25 183.0 8.4 268 20-337 42-331 (341)
45 cd08577 PI-PLCc_GDPD_SF_unchar 99.6 1.7E-14 3.7E-19 131.1 13.2 200 78-327 15-228 (228)
46 cd08576 GDPD_like_SMaseD_PLD G 99.4 5.6E-12 1.2E-16 115.8 17.5 216 73-339 8-250 (265)
47 KOG2421 Predicted starch-bindi 98.9 2.5E-09 5.3E-14 105.4 7.0 301 29-339 23-366 (417)
48 PF13653 GDPD_2: Glycerophosph 98.6 5.8E-08 1.2E-12 58.8 4.0 30 298-329 1-30 (30)
49 cd08592 PI-PLCc_gamma Catalyti 98.5 1.2E-07 2.5E-12 85.4 5.0 42 69-110 26-67 (229)
50 cd08627 PI-PLCc_gamma1 Catalyt 98.4 2.7E-07 5.8E-12 82.9 5.0 42 69-110 26-67 (229)
51 KOG2421 Predicted starch-bindi 98.1 3E-07 6.5E-12 90.7 -1.8 69 40-112 317-386 (417)
52 cd08597 PI-PLCc_PRIP_metazoa C 98.0 8.2E-06 1.8E-10 75.1 4.7 40 70-109 27-66 (260)
53 smart00148 PLCXc Phospholipase 97.4 0.00021 4.5E-09 59.8 4.8 41 69-109 25-65 (135)
54 cd08594 PI-PLCc_eta Catalytic 97.2 0.00047 1E-08 62.2 4.6 40 70-109 27-66 (227)
55 cd08632 PI-PLCc_eta1 Catalytic 97.1 0.00067 1.5E-08 62.0 4.5 40 70-109 27-66 (253)
56 cd08633 PI-PLCc_eta2 Catalytic 97.0 0.0007 1.5E-08 62.0 4.4 40 70-109 27-66 (254)
57 cd08631 PI-PLCc_delta4 Catalyt 97.0 0.00082 1.8E-08 61.8 4.5 40 70-109 27-66 (258)
58 cd08596 PI-PLCc_epsilon Cataly 97.0 0.00084 1.8E-08 61.6 4.5 40 70-109 27-66 (254)
59 cd08595 PI-PLCc_zeta Catalytic 97.0 0.00083 1.8E-08 61.7 4.5 40 70-109 27-66 (257)
60 cd08630 PI-PLCc_delta3 Catalyt 97.0 0.00082 1.8E-08 61.9 4.4 40 70-109 27-66 (258)
61 cd08599 PI-PLCc_plant Catalyti 97.0 0.001 2.2E-08 60.2 4.8 40 70-109 27-66 (228)
62 cd08628 PI-PLCc_gamma2 Catalyt 97.0 0.00098 2.1E-08 61.2 4.7 39 71-109 28-66 (254)
63 cd08558 PI-PLCc_eukaryota Cata 97.0 0.001 2.2E-08 60.1 4.7 40 70-109 27-66 (226)
64 cd08629 PI-PLCc_delta1 Catalyt 96.9 0.00098 2.1E-08 61.2 4.5 40 70-109 27-66 (258)
65 cd08598 PI-PLC1c_yeast Catalyt 96.9 0.0012 2.7E-08 59.7 4.5 40 70-109 27-66 (231)
66 cd08593 PI-PLCc_delta Catalyti 96.8 0.0013 2.9E-08 60.6 4.5 40 70-109 27-66 (257)
67 cd08626 PI-PLCc_beta4 Catalyti 96.8 0.0014 3E-08 60.3 4.4 40 70-109 27-68 (257)
68 cd08623 PI-PLCc_beta1 Catalyti 96.7 0.0016 3.6E-08 59.8 4.3 39 71-109 28-68 (258)
69 cd08624 PI-PLCc_beta2 Catalyti 96.7 0.0017 3.6E-08 59.9 4.2 40 70-109 27-68 (261)
70 cd08591 PI-PLCc_beta Catalytic 96.6 0.0023 5E-08 58.8 4.3 40 70-109 27-68 (257)
71 PF10223 DUF2181: Uncharacteri 96.6 0.55 1.2E-05 43.1 19.5 196 71-332 10-242 (244)
72 cd08625 PI-PLCc_beta3 Catalyti 96.4 0.0033 7.2E-08 58.1 4.2 40 70-109 27-68 (258)
73 KOG1264 Phospholipase C [Lipid 95.9 0.0071 1.5E-07 62.8 3.6 41 69-109 333-373 (1267)
74 PLN02230 phosphoinositide phos 95.1 0.022 4.8E-07 58.7 4.0 40 70-109 140-179 (598)
75 KOG0169 Phosphoinositide-speci 94.8 0.027 5.8E-07 58.5 3.7 39 71-109 315-353 (746)
76 PLN02228 Phosphoinositide phos 94.4 0.042 9.2E-07 56.3 4.2 40 70-109 131-171 (567)
77 PLN02952 phosphoinositide phos 93.8 0.069 1.5E-06 55.2 4.4 41 69-109 147-188 (599)
78 PLN02223 phosphoinositide phos 93.4 0.081 1.8E-06 53.7 4.0 37 73-109 135-171 (537)
79 PF10566 Glyco_hydro_97: Glyco 93.3 0.27 5.9E-06 45.9 7.0 71 258-330 32-130 (273)
80 PLN02222 phosphoinositide phos 92.9 0.11 2.4E-06 53.5 4.1 41 70-110 128-169 (581)
81 cd00137 PI-PLCc Catalytic doma 91.9 0.28 6.2E-06 46.0 5.2 40 70-109 32-71 (274)
82 PRK13111 trpA tryptophan synth 90.9 2 4.4E-05 39.9 9.8 109 226-339 77-196 (258)
83 KOG1265 Phospholipase C [Lipid 89.6 0.51 1.1E-05 50.1 5.0 57 39-110 321-381 (1189)
84 PF00388 PI-PLC-X: Phosphatidy 88.9 0.8 1.7E-05 38.5 5.0 40 70-109 24-63 (146)
85 COG0134 TrpC Indole-3-glycerol 88.2 6.2 0.00013 36.5 10.6 143 167-326 33-183 (254)
86 PLN02591 tryptophan synthase 88.0 4.2 9.1E-05 37.6 9.5 42 286-328 178-220 (250)
87 cd04724 Tryptophan_synthase_al 87.8 22 0.00047 32.6 15.6 38 287-326 177-215 (242)
88 PRK13111 trpA tryptophan synth 87.7 6 0.00013 36.8 10.4 209 45-327 10-229 (258)
89 CHL00200 trpA tryptophan synth 87.1 11 0.00024 35.1 11.8 41 286-327 191-232 (263)
90 cd04726 KGPDC_HPS 3-Keto-L-gul 86.6 7.1 0.00015 34.3 10.0 93 223-326 38-133 (202)
91 PLN02591 tryptophan synthase 86.1 6.5 0.00014 36.4 9.7 107 227-339 68-185 (250)
92 PF00218 IGPS: Indole-3-glycer 86.1 14 0.00031 34.2 11.9 148 163-327 31-186 (254)
93 CHL00200 trpA tryptophan synth 85.7 5.9 0.00013 37.0 9.2 108 226-339 80-198 (263)
94 COG0159 TrpA Tryptophan syntha 85.7 8.1 0.00018 36.0 9.9 106 226-336 82-198 (265)
95 COG1954 GlpP Glycerol-3-phosph 84.6 19 0.0004 31.3 10.8 141 162-328 30-175 (181)
96 PF04309 G3P_antiterm: Glycero 84.1 2.1 4.5E-05 37.4 5.1 142 162-330 26-173 (175)
97 PRK01130 N-acetylmannosamine-6 83.9 31 0.00068 30.8 14.1 137 176-326 3-146 (221)
98 PF01081 Aldolase: KDPG and KH 83.9 9.1 0.0002 34.0 9.2 96 226-341 47-145 (196)
99 cd04743 NPD_PKS 2-Nitropropane 83.3 16 0.00035 35.1 11.1 59 260-325 71-129 (320)
100 COG2200 Rtn c-di-GMP phosphodi 82.8 21 0.00046 32.9 11.6 42 284-327 194-235 (256)
101 PF04309 G3P_antiterm: Glycero 82.7 5.4 0.00012 34.8 7.1 51 285-337 33-90 (175)
102 TIGR01182 eda Entner-Doudoroff 82.7 14 0.00031 33.0 10.0 118 203-341 22-145 (204)
103 PF04131 NanE: Putative N-acet 81.9 27 0.00058 30.9 11.0 67 259-327 101-174 (192)
104 PF00290 Trp_syntA: Tryptophan 81.8 5.2 0.00011 37.2 7.0 107 227-338 76-193 (259)
105 PRK05718 keto-hydroxyglutarate 81.1 41 0.0009 30.2 16.4 118 203-341 29-152 (212)
106 PRK10550 tRNA-dihydrouridine s 81.0 24 0.00053 33.7 11.6 102 226-332 120-230 (312)
107 cd02812 PcrB_like PcrB_like pr 80.9 23 0.0005 32.1 10.7 67 260-327 134-205 (219)
108 PRK06015 keto-hydroxyglutarate 80.0 19 0.00041 32.2 9.7 117 203-340 18-140 (201)
109 cd08589 PI-PLCc_SaPLC1_like Ca 79.5 2.5 5.5E-05 40.5 4.2 42 70-111 42-103 (324)
110 TIGR00262 trpA tryptophan synt 78.4 21 0.00045 33.1 9.9 107 227-338 76-193 (256)
111 cd00405 PRAI Phosphoribosylant 77.7 24 0.00053 31.1 9.9 89 225-329 36-130 (203)
112 COG3010 NanE Putative N-acetyl 77.1 12 0.00025 33.6 7.3 69 266-335 142-222 (229)
113 TIGR01769 GGGP geranylgeranylg 76.8 26 0.00056 31.4 9.7 66 259-325 132-204 (205)
114 cd02911 arch_FMN Archeal FMN-b 76.6 46 0.001 30.3 11.5 91 227-328 130-222 (233)
115 cd04728 ThiG Thiazole synthase 76.2 44 0.00095 30.8 11.0 134 166-335 72-220 (248)
116 TIGR03128 RuMP_HxlA 3-hexulose 76.0 55 0.0012 28.8 11.7 93 224-326 38-133 (206)
117 PF09370 TIM-br_sig_trns: TIM- 75.8 24 0.00051 32.9 9.3 94 224-327 64-178 (268)
118 PRK00278 trpC indole-3-glycero 75.4 69 0.0015 29.7 16.0 138 168-327 40-188 (260)
119 PRK00208 thiG thiazole synthas 75.1 51 0.0011 30.4 11.2 134 166-335 72-220 (250)
120 PRK06552 keto-hydroxyglutarate 75.0 64 0.0014 29.0 14.2 109 203-328 27-137 (213)
121 TIGR01302 IMP_dehydrog inosine 74.9 33 0.00071 34.6 11.0 89 226-327 253-357 (450)
122 TIGR01163 rpe ribulose-phospha 74.5 34 0.00074 30.0 10.0 89 224-325 43-132 (210)
123 PLN02460 indole-3-glycerol-pho 72.9 94 0.002 30.1 13.1 143 168-327 104-259 (338)
124 TIGR01303 IMP_DH_rel_1 IMP deh 72.8 35 0.00075 34.7 10.6 89 227-328 255-359 (475)
125 PF03060 NMO: Nitronate monoox 71.7 18 0.00039 34.8 8.0 55 267-326 109-163 (330)
126 cd04724 Tryptophan_synthase_al 70.7 36 0.00078 31.2 9.4 84 226-315 65-149 (242)
127 cd04728 ThiG Thiazole synthase 70.1 21 0.00045 32.9 7.5 38 286-325 110-150 (248)
128 cd02809 alpha_hydroxyacid_oxid 69.1 79 0.0017 29.8 11.7 111 204-325 84-199 (299)
129 PF04131 NanE: Putative N-acet 69.0 83 0.0018 27.8 11.2 96 225-325 20-118 (192)
130 cd04729 NanE N-acetylmannosami 68.8 86 0.0019 28.0 16.0 141 172-326 3-150 (219)
131 PRK01130 N-acetylmannosamine-6 68.7 74 0.0016 28.4 10.9 40 286-326 162-202 (221)
132 TIGR01362 KDO8P_synth 3-deoxy- 68.6 94 0.002 28.8 11.4 137 164-326 53-221 (258)
133 TIGR03151 enACPred_II putative 68.1 30 0.00065 33.0 8.6 60 260-325 76-135 (307)
134 PRK06843 inosine 5-monophospha 68.1 42 0.00091 33.3 9.7 90 227-329 183-288 (404)
135 COG2179 Predicted hydrolase of 67.1 27 0.00058 30.3 7.0 77 265-342 21-110 (175)
136 cd00331 IGPS Indole-3-glycerol 66.7 94 0.002 27.6 12.8 128 179-326 10-148 (217)
137 PRK07114 keto-hydroxyglutarate 66.4 1E+02 0.0022 27.9 14.3 70 264-341 84-155 (222)
138 PRK05198 2-dehydro-3-deoxyphos 65.5 1.1E+02 0.0025 28.4 11.3 137 164-326 61-229 (264)
139 PTZ00170 D-ribulose-5-phosphat 65.1 50 0.0011 29.9 9.1 82 223-315 50-134 (228)
140 PRK10415 tRNA-dihydrouridine s 65.1 87 0.0019 30.0 11.1 77 260-336 151-239 (321)
141 cd00622 PLPDE_III_ODC Type III 64.6 99 0.0022 29.8 11.7 90 229-336 16-108 (362)
142 PRK08883 ribulose-phosphate 3- 63.8 84 0.0018 28.4 10.2 83 222-315 42-126 (220)
143 PTZ00314 inosine-5'-monophosph 63.6 36 0.00078 34.8 8.6 90 226-328 270-375 (495)
144 TIGR03151 enACPred_II putative 63.4 1.4E+02 0.003 28.4 12.2 105 205-327 78-191 (307)
145 PRK07807 inosine 5-monophospha 63.4 41 0.00088 34.3 8.9 89 226-327 256-360 (479)
146 cd00381 IMPDH IMPDH: The catal 63.3 49 0.0011 31.8 9.0 89 226-327 123-227 (325)
147 COG0042 tRNA-dihydrouridine sy 63.1 91 0.002 30.0 10.8 104 227-334 125-241 (323)
148 PRK13957 indole-3-glycerol-pho 62.9 1.3E+02 0.0028 27.8 16.1 140 168-327 31-179 (247)
149 cd02803 OYE_like_FMN_family Ol 62.8 77 0.0017 30.1 10.4 107 226-332 195-317 (327)
150 PRK02261 methylaspartate mutas 62.8 88 0.0019 25.9 9.6 81 259-339 42-134 (137)
151 PRK13802 bifunctional indole-3 62.7 2.2E+02 0.0048 30.5 16.0 165 168-351 39-221 (695)
152 KOG0538 Glycolate oxidase [Ene 62.6 48 0.001 31.6 8.3 95 222-331 208-312 (363)
153 cd00381 IMPDH IMPDH: The catal 62.2 97 0.0021 29.8 10.9 58 266-325 101-162 (325)
154 PRK00208 thiG thiazole synthas 62.1 38 0.00081 31.3 7.5 38 286-325 110-150 (250)
155 PRK15452 putative protease; Pr 61.8 1.8E+02 0.004 29.3 16.0 83 206-303 81-167 (443)
156 PRK14040 oxaloacetate decarbox 61.7 78 0.0017 33.2 10.7 114 224-338 62-193 (593)
157 PRK13307 bifunctional formalde 61.5 44 0.00095 33.1 8.4 93 221-324 209-304 (391)
158 PRK12581 oxaloacetate decarbox 61.4 79 0.0017 32.1 10.4 113 225-339 71-202 (468)
159 PRK08227 autoinducer 2 aldolas 61.1 97 0.0021 28.9 10.2 110 226-336 62-189 (264)
160 cd04735 OYE_like_4_FMN Old yel 60.9 50 0.0011 32.1 8.8 107 226-336 198-328 (353)
161 PRK08883 ribulose-phosphate 3- 60.8 99 0.0021 27.9 10.1 80 260-339 14-106 (220)
162 COG0800 Eda 2-keto-3-deoxy-6-p 60.6 44 0.00096 30.0 7.5 115 207-341 31-150 (211)
163 PRK05848 nicotinate-nucleotide 60.5 1.4E+02 0.0029 28.1 11.2 85 226-329 169-260 (273)
164 cd04730 NPD_like 2-Nitropropan 60.5 60 0.0013 29.1 8.8 62 260-327 69-130 (236)
165 PF02254 TrkA_N: TrkA-N domain 60.3 65 0.0014 25.1 8.0 106 201-325 8-115 (116)
166 TIGR01501 MthylAspMutase methy 59.9 44 0.00095 27.8 7.0 79 259-338 40-131 (134)
167 PRK13587 1-(5-phosphoribosyl)- 59.9 1.4E+02 0.003 27.2 12.2 109 217-326 100-221 (234)
168 cd02071 MM_CoA_mut_B12_BD meth 59.8 59 0.0013 26.1 7.8 75 260-336 39-121 (122)
169 PRK08745 ribulose-phosphate 3- 59.8 1.1E+02 0.0023 27.8 10.1 79 259-339 17-110 (223)
170 COG1456 CdhE CO dehydrogenase/ 59.7 60 0.0013 31.6 8.6 42 201-245 147-189 (467)
171 COG2185 Sbm Methylmalonyl-CoA 59.1 50 0.0011 27.8 7.1 78 260-339 52-138 (143)
172 COG0352 ThiE Thiamine monophos 59.1 55 0.0012 29.5 8.0 57 265-326 75-131 (211)
173 PF00478 IMPDH: IMP dehydrogen 59.0 1.2E+02 0.0026 29.6 10.8 89 227-328 138-242 (352)
174 TIGR00737 nifR3_yhdG putative 58.3 1.3E+02 0.0028 28.7 11.0 69 260-328 149-224 (319)
175 TIGR00736 nifR3_rel_arch TIM-b 58.1 51 0.0011 30.1 7.7 66 261-327 151-221 (231)
176 PRK14042 pyruvate carboxylase 57.9 83 0.0018 33.0 10.1 113 225-338 62-192 (596)
177 PLN02334 ribulose-phosphate 3- 57.7 1.3E+02 0.0029 27.0 10.5 88 223-323 51-143 (229)
178 PRK06852 aldolase; Validated 57.7 1.6E+02 0.0034 28.1 11.2 111 226-337 80-227 (304)
179 PLN02274 inosine-5'-monophosph 57.6 1.2E+02 0.0025 31.2 11.0 88 227-327 278-381 (505)
180 PRK08745 ribulose-phosphate 3- 57.0 1.5E+02 0.0031 27.0 10.5 96 223-329 47-144 (223)
181 cd04740 DHOD_1B_like Dihydroor 56.5 1.6E+02 0.0034 27.6 11.2 50 287-337 221-276 (296)
182 cd04731 HisF The cyclase subun 56.5 86 0.0019 28.4 9.1 68 261-328 152-225 (243)
183 TIGR00343 pyridoxal 5'-phospha 56.5 1.4E+02 0.003 28.2 10.3 40 285-325 185-227 (287)
184 TIGR01521 FruBisAldo_II_B fruc 56.3 2E+02 0.0044 28.0 13.9 86 202-299 28-137 (347)
185 cd04732 HisA HisA. Phosphorib 56.1 1.5E+02 0.0032 26.5 12.3 67 260-327 148-220 (234)
186 cd04732 HisA HisA. Phosphorib 55.2 1.2E+02 0.0025 27.2 9.7 54 285-339 61-120 (234)
187 TIGR00640 acid_CoA_mut_C methy 54.8 63 0.0014 26.7 7.2 64 260-325 42-111 (132)
188 PRK05567 inosine 5'-monophosph 54.7 67 0.0015 32.7 8.8 89 226-327 257-361 (486)
189 PF00834 Ribul_P_3_epim: Ribul 54.6 36 0.00078 30.3 6.0 68 223-302 43-111 (201)
190 PRK10060 RNase II stability mo 54.2 1.4E+02 0.003 31.7 11.4 111 201-326 508-639 (663)
191 COG1954 GlpP Glycerol-3-phosph 54.1 93 0.002 27.1 8.1 53 285-337 37-94 (181)
192 cd01573 modD_like ModD; Quinol 54.0 1.4E+02 0.003 28.0 10.1 88 226-328 171-260 (272)
193 COG0826 Collagenase and relate 54.0 43 0.00092 32.6 6.9 50 286-336 52-109 (347)
194 PRK15452 putative protease; Pr 53.2 63 0.0014 32.6 8.1 51 286-336 49-106 (443)
195 COG0269 SgbH 3-hexulose-6-phos 53.1 1.6E+02 0.0035 26.6 9.8 97 223-329 41-140 (217)
196 TIGR01305 GMP_reduct_1 guanosi 52.9 76 0.0017 30.7 8.2 87 227-326 139-241 (343)
197 cd02072 Glm_B12_BD B12 binding 52.7 76 0.0017 26.1 7.2 67 259-326 38-115 (128)
198 cd04736 MDH_FMN Mandelate dehy 52.4 2.2E+02 0.0048 27.9 11.5 95 223-331 222-323 (361)
199 PRK08005 epimerase; Validated 52.4 1.5E+02 0.0032 26.7 9.7 79 260-340 15-107 (210)
200 TIGR01334 modD putative molybd 52.0 2.1E+02 0.0045 26.9 11.4 65 286-353 176-246 (277)
201 PRK09140 2-dehydro-3-deoxy-6-p 51.8 1.8E+02 0.0038 26.0 12.5 59 262-328 74-132 (206)
202 cd06589 GH31 The enzymes of gl 51.6 26 0.00056 32.5 4.9 44 285-329 68-116 (265)
203 cd04733 OYE_like_2_FMN Old yel 50.9 1.4E+02 0.003 28.7 10.0 104 226-332 203-328 (338)
204 cd08590 PI-PLCc_Rv2075c_like C 50.6 18 0.00039 33.8 3.6 38 71-109 40-77 (267)
205 TIGR01768 GGGP-family geranylg 49.9 49 0.0011 30.1 6.1 57 270-327 148-209 (223)
206 PRK08091 ribulose-phosphate 3- 49.8 1.3E+02 0.0029 27.3 9.0 80 260-340 27-117 (228)
207 PRK05835 fructose-bisphosphate 49.8 2.4E+02 0.0052 27.0 14.5 111 201-323 28-172 (307)
208 smart00052 EAL Putative diguan 49.8 1.8E+02 0.0039 25.5 11.3 39 286-326 193-231 (241)
209 PRK07998 gatY putative fructos 49.7 2.3E+02 0.005 26.7 16.6 140 166-327 3-174 (283)
210 PF00563 EAL: EAL domain; Int 49.5 33 0.00071 30.3 5.1 58 267-326 165-231 (236)
211 PF01959 DHQS: 3-dehydroquinat 49.5 1.1E+02 0.0023 29.9 8.6 54 285-340 112-169 (354)
212 TIGR01235 pyruv_carbox pyruvat 49.1 1.6E+02 0.0034 33.6 11.2 112 226-338 592-727 (1143)
213 PF01136 Peptidase_U32: Peptid 49.0 91 0.002 28.0 8.0 65 260-331 4-72 (233)
214 COG1038 PycA Pyruvate carboxyl 48.2 32 0.00069 37.0 5.2 85 257-342 66-161 (1149)
215 PF01207 Dus: Dihydrouridine s 47.9 64 0.0014 30.7 7.0 73 260-332 140-224 (309)
216 PRK13125 trpA tryptophan synth 47.9 2.2E+02 0.0047 25.9 11.9 83 226-315 63-149 (244)
217 COG5016 Pyruvate/oxaloacetate 47.4 91 0.002 31.0 7.8 98 226-326 65-176 (472)
218 PF03537 Glyco_hydro_114: Glyc 47.1 32 0.00069 25.3 3.8 33 269-303 24-56 (74)
219 cd00452 KDPG_aldolase KDPG and 47.0 1.9E+02 0.0042 25.1 15.7 114 206-339 21-138 (190)
220 cd04727 pdxS PdxS is a subunit 47.0 2.5E+02 0.0055 26.4 10.7 40 285-325 182-224 (283)
221 TIGR03849 arch_ComA phosphosul 46.9 1.2E+02 0.0027 27.7 8.3 68 259-327 72-155 (237)
222 cd08557 PI-PLCc_bacteria_like 46.7 24 0.00053 32.4 3.9 38 72-109 37-75 (271)
223 PRK07259 dihydroorotate dehydr 46.6 2.5E+02 0.0054 26.3 10.9 51 287-338 224-280 (301)
224 TIGR01037 pyrD_sub1_fam dihydr 46.1 2.3E+02 0.005 26.5 10.6 50 287-337 224-279 (300)
225 PF02679 ComA: (2R)-phospho-3- 46.1 76 0.0017 29.2 6.8 69 259-328 85-169 (244)
226 PRK10558 alpha-dehydro-beta-de 45.9 2.1E+02 0.0046 26.4 9.9 72 264-336 33-111 (256)
227 PRK08649 inosine 5-monophospha 45.4 84 0.0018 30.8 7.5 65 260-326 143-215 (368)
228 PRK12737 gatY tagatose-bisphos 45.3 2.7E+02 0.0059 26.3 14.1 111 201-324 29-173 (284)
229 COG1830 FbaB DhnA-type fructos 45.1 82 0.0018 29.4 6.9 89 265-353 104-213 (265)
230 TIGR03239 GarL 2-dehydro-3-deo 44.8 1.3E+02 0.0027 27.8 8.2 72 264-336 26-104 (249)
231 TIGR03572 WbuZ glycosyl amidat 44.6 1.5E+02 0.0033 26.5 8.7 66 261-326 156-227 (232)
232 PRK09196 fructose-1,6-bisphosp 44.2 3.1E+02 0.0068 26.7 14.3 87 201-299 29-139 (347)
233 TIGR02311 HpaI 2,4-dihydroxyhe 44.1 2.2E+02 0.0047 26.2 9.7 74 264-338 26-106 (249)
234 cd04734 OYE_like_3_FMN Old yel 44.1 3E+02 0.0066 26.5 11.2 48 287-334 275-323 (343)
235 KOG2550 IMP dehydrogenase/GMP 44.0 86 0.0019 31.2 7.1 90 223-325 277-382 (503)
236 COG0036 Rpe Pentose-5-phosphat 43.9 2.5E+02 0.0054 25.5 9.8 81 260-340 18-110 (220)
237 PRK07455 keto-hydroxyglutarate 43.9 2.2E+02 0.0048 24.8 12.9 95 226-340 51-148 (187)
238 PF02581 TMP-TENI: Thiamine mo 43.7 98 0.0021 26.7 7.0 56 265-325 66-121 (180)
239 PRK05581 ribulose-phosphate 3- 43.5 2.1E+02 0.0046 25.1 9.5 66 224-302 48-115 (220)
240 cd02922 FCB2_FMN Flavocytochro 43.4 2.7E+02 0.0058 27.0 10.6 37 286-324 202-239 (344)
241 PRK14057 epimerase; Provisiona 43.2 1.8E+02 0.0039 27.0 8.8 79 260-339 34-123 (254)
242 TIGR01163 rpe ribulose-phospha 43.0 1.7E+02 0.0036 25.5 8.6 65 260-325 13-85 (210)
243 cd08588 PI-PLCc_At5g67130_like 42.8 34 0.00073 32.0 4.1 36 71-107 34-69 (270)
244 PRK05848 nicotinate-nucleotide 42.8 92 0.002 29.2 7.0 64 286-352 169-239 (273)
245 PF00289 CPSase_L_chain: Carba 42.7 51 0.0011 26.3 4.6 90 202-299 13-102 (110)
246 PRK00043 thiE thiamine-phospha 42.7 1E+02 0.0022 27.0 7.1 56 265-325 75-130 (212)
247 PRK07709 fructose-bisphosphate 42.6 3E+02 0.0065 26.0 14.4 112 201-324 29-174 (285)
248 CHL00162 thiG thiamin biosynth 42.6 1.5E+02 0.0032 27.6 8.0 53 283-336 175-235 (267)
249 cd00331 IGPS Indole-3-glycerol 42.6 2E+02 0.0044 25.4 9.1 64 260-324 33-99 (217)
250 cd02810 DHOD_DHPD_FMN Dihydroo 42.6 2.4E+02 0.0053 26.1 10.0 41 287-328 231-274 (289)
251 PF05690 ThiG: Thiazole biosyn 42.5 1.1E+02 0.0023 28.2 7.1 136 166-336 72-221 (247)
252 PRK06096 molybdenum transport 42.3 91 0.002 29.4 6.9 64 287-353 178-247 (284)
253 PRK04180 pyridoxal biosynthesi 42.3 3.1E+02 0.0066 26.0 10.7 40 285-325 191-233 (293)
254 COG2102 Predicted ATPases of P 42.2 2.7E+02 0.0058 25.3 10.1 100 217-325 39-141 (223)
255 TIGR01304 IMP_DH_rel_2 IMP deh 42.0 1.1E+02 0.0023 30.1 7.6 63 260-324 144-214 (369)
256 TIGR01048 lysA diaminopimelate 42.0 3.3E+02 0.0072 26.7 11.4 91 228-336 38-133 (417)
257 TIGR00693 thiE thiamine-phosph 41.5 1.4E+02 0.003 25.9 7.7 55 265-324 67-121 (196)
258 PRK13399 fructose-1,6-bisphosp 41.5 3.5E+02 0.0075 26.4 11.2 87 201-299 29-139 (347)
259 TIGR00007 phosphoribosylformim 41.2 1.8E+02 0.004 25.9 8.7 67 260-327 147-219 (230)
260 cd00564 TMP_TenI Thiamine mono 41.1 1.1E+02 0.0024 26.1 7.0 55 266-325 67-121 (196)
261 PLN02535 glycolate oxidase 40.7 2.8E+02 0.0061 27.2 10.3 96 222-331 208-312 (364)
262 PRK12330 oxaloacetate decarbox 40.3 3.1E+02 0.0068 28.1 10.8 116 224-339 62-194 (499)
263 PRK08005 epimerase; Validated 40.3 2.8E+02 0.006 24.9 9.8 93 223-329 44-140 (210)
264 TIGR02708 L_lactate_ox L-lacta 40.2 3.2E+02 0.007 26.8 10.6 96 222-331 213-317 (367)
265 PF00834 Ribul_P_3_epim: Ribul 40.2 1.7E+02 0.0037 26.0 8.1 79 259-339 13-105 (201)
266 PRK06559 nicotinate-nucleotide 40.1 1.1E+02 0.0024 28.9 7.1 64 286-353 184-252 (290)
267 PRK01033 imidazole glycerol ph 39.9 1.8E+02 0.004 26.7 8.6 69 260-328 154-228 (258)
268 PRK09250 fructose-bisphosphate 39.9 1.4E+02 0.0031 29.0 7.9 67 264-330 152-241 (348)
269 PLN02229 alpha-galactosidase 39.8 96 0.0021 31.1 6.9 41 286-328 131-185 (427)
270 PRK09722 allulose-6-phosphate 39.8 2.9E+02 0.0064 25.1 9.6 80 223-315 45-128 (229)
271 PF00072 Response_reg: Respons 39.3 1.6E+02 0.0036 22.0 10.7 73 261-334 33-110 (112)
272 PRK00748 1-(5-phosphoribosyl)- 39.2 1.6E+02 0.0034 26.3 8.0 67 260-327 148-221 (233)
273 PRK10669 putative cation:proto 38.7 4E+02 0.0087 27.5 11.8 127 201-344 427-553 (558)
274 cd02932 OYE_YqiM_FMN Old yello 38.7 2.8E+02 0.006 26.6 9.9 102 226-331 208-325 (336)
275 PRK10128 2-keto-3-deoxy-L-rham 38.5 2.1E+02 0.0045 26.8 8.6 73 264-337 32-111 (267)
276 KOG1606 Stationary phase-induc 38.4 1E+02 0.0022 27.7 6.2 40 286-326 196-238 (296)
277 PF12957 DUF3846: Domain of un 38.2 63 0.0014 24.9 4.4 35 69-108 14-48 (95)
278 PRK13523 NADPH dehydrogenase N 38.2 2.1E+02 0.0046 27.6 9.0 109 226-338 196-322 (337)
279 PRK02083 imidazole glycerol ph 38.2 3.1E+02 0.0068 24.9 13.8 68 260-327 155-228 (253)
280 PRK15447 putative protease; Pr 38.2 3E+02 0.0065 26.0 9.9 79 255-335 12-104 (301)
281 PRK13585 1-(5-phosphoribosyl)- 37.9 2.9E+02 0.0062 24.8 9.5 47 291-338 71-122 (241)
282 cd06828 PLPDE_III_DapDC Type I 37.9 3.8E+02 0.0081 25.8 11.2 90 229-336 17-111 (373)
283 PRK05096 guanosine 5'-monophos 37.7 3.9E+02 0.0085 26.0 13.2 89 226-327 139-243 (346)
284 cd02801 DUS_like_FMN Dihydrour 37.6 2.9E+02 0.0063 24.4 10.8 71 261-331 141-218 (231)
285 PRK06106 nicotinate-nucleotide 37.5 1.1E+02 0.0024 28.8 6.7 64 286-353 181-249 (281)
286 PRK12331 oxaloacetate decarbox 37.3 3.7E+02 0.008 27.2 10.8 112 225-338 62-192 (448)
287 PRK08255 salicylyl-CoA 5-hydro 37.1 3.3E+02 0.0072 29.4 11.2 102 226-330 605-721 (765)
288 cd02067 B12-binding B12 bindin 37.1 1.2E+02 0.0026 24.0 6.1 44 286-331 68-114 (119)
289 PRK04128 1-(5-phosphoribosyl)- 37.0 3.2E+02 0.0069 24.7 10.8 32 295-327 181-212 (228)
290 COG4943 Predicted signal trans 37.0 3.9E+02 0.0085 27.3 10.5 135 179-336 355-512 (524)
291 COG0669 CoaD Phosphopantethein 36.9 1E+02 0.0022 26.3 5.7 85 220-312 7-97 (159)
292 PRK03512 thiamine-phosphate py 36.8 1.4E+02 0.0031 26.6 7.1 56 265-325 73-128 (211)
293 PRK06015 keto-hydroxyglutarate 36.3 3.1E+02 0.0068 24.4 9.6 81 263-346 21-104 (201)
294 cd06810 PLPDE_III_ODC_DapDC_li 36.2 4E+02 0.0086 25.6 10.9 90 229-336 15-108 (368)
295 PRK07896 nicotinate-nucleotide 36.2 3.4E+02 0.0074 25.7 9.8 85 226-329 187-277 (289)
296 PRK06978 nicotinate-nucleotide 36.1 1.3E+02 0.0028 28.6 6.9 64 286-353 193-260 (294)
297 PRK06543 nicotinate-nucleotide 36.0 1.3E+02 0.0027 28.5 6.8 63 287-353 181-248 (281)
298 PRK05458 guanosine 5'-monophos 35.9 4.1E+02 0.0088 25.6 10.7 91 227-330 129-234 (326)
299 TIGR00735 hisF imidazoleglycer 35.7 3.5E+02 0.0075 24.7 11.1 66 260-326 157-229 (254)
300 PF10210 MRP-S32: Mitochondria 35.6 28 0.0006 27.2 1.9 17 91-107 4-21 (96)
301 PRK08610 fructose-bisphosphate 35.3 3.9E+02 0.0085 25.2 14.3 113 201-325 29-175 (286)
302 PRK01222 N-(5'-phosphoribosyl) 35.3 3.3E+02 0.007 24.3 11.2 65 259-327 65-132 (210)
303 cd00429 RPE Ribulose-5-phospha 35.2 2.3E+02 0.0049 24.6 8.2 65 260-325 14-86 (211)
304 COG0106 HisA Phosphoribosylfor 34.8 3.7E+02 0.008 24.8 11.9 112 216-328 98-223 (241)
305 PRK06512 thiamine-phosphate py 34.8 1.6E+02 0.0035 26.5 7.2 57 265-325 81-137 (221)
306 cd00429 RPE Ribulose-5-phospha 34.6 3.1E+02 0.0066 23.8 9.8 85 224-323 44-131 (211)
307 TIGR00338 serB phosphoserine p 34.5 1.5E+02 0.0033 25.9 7.0 40 285-325 90-129 (219)
308 PRK07428 nicotinate-nucleotide 34.3 1.6E+02 0.0035 27.8 7.2 63 287-352 184-253 (288)
309 PRK02290 3-dehydroquinate synt 33.7 2.2E+02 0.0047 27.6 8.0 52 286-340 105-160 (344)
310 cd04729 NanE N-acetylmannosami 33.6 3.4E+02 0.0074 24.0 11.3 40 286-326 166-206 (219)
311 COG0635 HemN Coproporphyrinoge 33.6 80 0.0017 31.5 5.4 47 179-237 123-171 (416)
312 KOG2518 5'-3' exonuclease [Rep 33.6 46 0.001 33.9 3.6 45 286-331 131-175 (556)
313 COG0157 NadC Nicotinate-nucleo 33.6 1.8E+02 0.004 27.3 7.3 66 286-354 175-246 (280)
314 PRK08385 nicotinate-nucleotide 33.4 1.3E+02 0.0029 28.2 6.5 64 286-352 170-241 (278)
315 cd04737 LOX_like_FMN L-Lactate 32.7 4.8E+02 0.01 25.4 10.5 95 223-331 207-310 (351)
316 PTZ00170 D-ribulose-5-phosphat 32.6 2.9E+02 0.0062 25.0 8.5 65 260-324 21-93 (228)
317 COG0656 ARA1 Aldo/keto reducta 31.7 2.6E+02 0.0056 26.4 8.1 70 162-235 84-154 (280)
318 PLN02274 inosine-5'-monophosph 31.7 1.9E+02 0.0042 29.6 7.9 58 265-324 254-315 (505)
319 PF00702 Hydrolase: haloacid d 31.7 1.2E+02 0.0027 26.0 5.8 54 285-339 132-192 (215)
320 PLN02334 ribulose-phosphate 3- 31.6 3.8E+02 0.0083 24.0 9.6 63 260-323 22-92 (229)
321 cd01453 vWA_transcription_fact 31.5 1.9E+02 0.0042 25.0 6.9 55 287-342 127-182 (183)
322 TIGR01684 viral_ppase viral ph 31.5 1.2E+02 0.0026 28.9 5.8 41 286-327 152-196 (301)
323 PF05221 AdoHcyase: S-adenosyl 31.3 2.9E+02 0.0063 25.9 8.2 71 265-336 61-138 (268)
324 PF04413 Glycos_transf_N: 3-De 31.3 2E+02 0.0042 25.2 6.9 120 203-337 37-167 (186)
325 TIGR01859 fruc_bis_ald_ fructo 31.1 4.5E+02 0.0097 24.7 14.4 61 263-324 89-171 (282)
326 PRK08673 3-deoxy-7-phosphohept 30.8 94 0.002 30.1 5.2 26 76-101 281-306 (335)
327 COG0019 LysA Diaminopimelate d 30.7 5.4E+02 0.012 25.5 11.2 102 218-337 28-136 (394)
328 PF02638 DUF187: Glycosyl hydr 30.6 41 0.0009 32.1 2.7 18 285-302 72-89 (311)
329 cd06839 PLPDE_III_Btrk_like Ty 30.2 5.1E+02 0.011 25.0 11.0 51 285-336 61-114 (382)
330 PRK04169 geranylgeranylglycery 30.1 1.3E+02 0.0028 27.5 5.7 43 284-327 170-214 (232)
331 PF03740 PdxJ: Pyridoxal phosp 30.0 98 0.0021 28.4 4.8 37 286-324 114-150 (239)
332 PF08955 BofC_C: BofC C-termin 30.0 68 0.0015 23.8 3.1 40 94-133 14-53 (75)
333 TIGR01182 eda Entner-Doudoroff 29.9 4E+02 0.0088 23.7 9.7 80 264-346 26-108 (204)
334 PRK06552 keto-hydroxyglutarate 29.8 3.6E+02 0.0078 24.2 8.5 79 266-347 33-117 (213)
335 PRK14024 phosphoribosyl isomer 29.7 2.3E+02 0.005 25.7 7.4 69 260-328 148-224 (241)
336 COG2070 Dioxygenases related t 29.7 2.8E+02 0.0061 26.8 8.3 56 268-328 101-156 (336)
337 PRK13396 3-deoxy-7-phosphohept 29.7 90 0.002 30.4 4.8 48 69-133 283-330 (352)
338 cd01994 Alpha_ANH_like_IV This 29.6 1.7E+02 0.0036 25.8 6.2 33 290-324 108-142 (194)
339 PF01136 Peptidase_U32: Peptid 29.5 4.1E+02 0.0088 23.6 10.7 65 204-280 5-69 (233)
340 TIGR00290 MJ0570_dom MJ0570-re 29.4 4.3E+02 0.0094 23.9 10.2 98 218-324 39-139 (223)
341 PRK08385 nicotinate-nucleotide 28.9 4.9E+02 0.011 24.4 10.4 84 227-329 171-262 (278)
342 COG0135 TrpF Phosphoribosylant 28.8 4.3E+02 0.0093 23.7 10.3 65 259-328 63-131 (208)
343 cd04738 DHOD_2_like Dihydrooro 28.3 3.7E+02 0.0081 25.6 8.9 39 287-326 268-309 (327)
344 cd07943 DRE_TIM_HOA 4-hydroxy- 28.1 3.3E+02 0.0071 25.0 8.3 106 225-339 61-180 (263)
345 PF01791 DeoC: DeoC/LacD famil 27.8 1.1E+02 0.0025 27.6 5.0 66 263-328 81-168 (236)
346 COG0826 Collagenase and relate 27.8 5.7E+02 0.012 24.8 13.1 64 204-279 82-145 (347)
347 PRK11815 tRNA-dihydrouridine s 27.8 3.1E+02 0.0068 26.3 8.3 73 262-336 155-248 (333)
348 cd06547 GH85_ENGase Endo-beta- 27.7 1.9E+02 0.004 28.1 6.7 67 260-327 92-180 (339)
349 COG0036 Rpe Pentose-5-phosphat 27.6 4.7E+02 0.01 23.7 10.0 95 222-328 46-142 (220)
350 COG2923 DsrF Uncharacterized p 27.5 70 0.0015 25.9 3.0 50 45-107 2-51 (118)
351 PF01645 Glu_synthase: Conserv 27.5 4.5E+02 0.0097 25.8 9.2 96 227-332 192-309 (368)
352 PRK02615 thiamine-phosphate py 27.5 2.2E+02 0.0048 27.7 7.1 56 264-324 210-265 (347)
353 PRK11359 cyclic-di-GMP phospho 27.2 5.5E+02 0.012 27.3 10.9 47 286-334 738-787 (799)
354 PRK09016 quinolinate phosphori 26.9 4.8E+02 0.01 24.8 9.0 85 226-329 196-283 (296)
355 PLN03033 2-dehydro-3-deoxyphos 26.9 5.5E+02 0.012 24.3 11.5 116 164-302 67-195 (290)
356 PF15632 ATPgrasp_Ter: ATP-gra 26.7 3.3E+02 0.0071 26.3 8.1 81 260-341 55-144 (329)
357 PRK08195 4-hyroxy-2-oxovalerat 26.4 5.9E+02 0.013 24.5 11.5 106 225-339 64-183 (337)
358 PRK11059 regulatory protein Cs 26.3 1E+02 0.0022 32.5 4.9 40 286-327 593-632 (640)
359 PRK09427 bifunctional indole-3 26.3 2.5E+02 0.0054 28.5 7.5 137 168-327 40-187 (454)
360 TIGR00262 trpA tryptophan synt 26.1 5.2E+02 0.011 23.8 19.1 42 286-328 187-229 (256)
361 PRK05581 ribulose-phosphate 3- 26.1 4.2E+02 0.0092 23.2 8.4 15 263-277 21-35 (220)
362 PLN02808 alpha-galactosidase 26.1 1.6E+02 0.0034 29.2 5.9 41 286-328 100-155 (386)
363 cd03174 DRE_TIM_metallolyase D 25.9 4.9E+02 0.011 23.4 11.0 111 200-324 18-164 (265)
364 CHL00162 thiG thiamin biosynth 25.9 2.1E+02 0.0046 26.6 6.2 36 287-324 128-163 (267)
365 PRK07114 keto-hydroxyglutarate 25.8 5E+02 0.011 23.5 9.0 80 265-347 34-120 (222)
366 TIGR02129 hisA_euk phosphoribo 25.8 5.4E+02 0.012 23.8 9.0 69 269-340 49-127 (253)
367 TIGR01670 YrbI-phosphatas 3-de 25.8 2.4E+02 0.0053 23.4 6.4 38 287-325 35-72 (154)
368 PRK08091 ribulose-phosphate 3- 25.7 5.1E+02 0.011 23.5 9.1 79 223-315 56-138 (228)
369 PRK11829 biofilm formation reg 25.6 4.7E+02 0.01 27.3 9.9 52 287-340 600-654 (660)
370 TIGR00167 cbbA ketose-bisphosp 25.4 5.3E+02 0.012 24.3 9.1 77 238-324 77-176 (288)
371 COG0214 SNZ1 Pyridoxine biosyn 25.4 1.3E+02 0.0028 27.6 4.7 49 285-334 194-252 (296)
372 TIGR03234 OH-pyruv-isom hydrox 25.2 2.9E+02 0.0062 24.9 7.3 45 258-302 14-58 (254)
373 COG0075 Serine-pyruvate aminot 25.2 3.5E+02 0.0077 26.7 8.1 40 286-327 151-191 (383)
374 TIGR01108 oadA oxaloacetate de 25.2 4.1E+02 0.0089 27.8 9.0 113 225-338 57-187 (582)
375 cd03332 LMO_FMN L-Lactate 2-mo 25.1 6.7E+02 0.015 24.7 10.4 95 223-331 239-342 (383)
376 PF13344 Hydrolase_6: Haloacid 25.0 1.7E+02 0.0036 22.7 4.9 52 285-338 19-77 (101)
377 TIGR03010 sulf_tusC_dsrF sulfu 25.0 46 0.001 26.6 1.7 38 70-107 12-49 (116)
378 PF12579 DUF3755: Protein of u 24.9 15 0.00033 23.0 -0.9 16 13-29 1-16 (35)
379 COG1242 Predicted Fe-S oxidore 24.8 1.3E+02 0.0028 28.4 4.6 62 162-234 95-163 (312)
380 TIGR03217 4OH_2_O_val_ald 4-hy 24.7 5.3E+02 0.011 24.8 9.2 105 225-338 63-181 (333)
381 TIGR00742 yjbN tRNA dihydrouri 24.7 3.5E+02 0.0076 25.9 7.9 68 262-331 145-228 (318)
382 PLN02692 alpha-galactosidase 24.7 1.4E+02 0.0031 29.7 5.3 42 286-328 124-179 (412)
383 PF13419 HAD_2: Haloacid dehal 24.2 3.5E+02 0.0077 21.9 7.2 55 285-340 82-148 (176)
384 PRK09722 allulose-6-phosphate 24.2 5.5E+02 0.012 23.4 9.6 77 260-339 17-108 (229)
385 PRK09484 3-deoxy-D-manno-octul 24.1 2.3E+02 0.005 24.4 6.1 14 289-302 57-70 (183)
386 PRK07896 nicotinate-nucleotide 24.1 2.7E+02 0.0059 26.4 6.8 63 287-352 188-256 (289)
387 cd02810 DHOD_DHPD_FMN Dihydroo 24.1 3.9E+02 0.0084 24.7 8.0 39 287-325 152-195 (289)
388 cd04740 DHOD_1B_like Dihydroor 24.0 5.9E+02 0.013 23.6 10.3 38 287-324 144-184 (296)
389 PLN02979 glycolate oxidase 23.9 7E+02 0.015 24.5 10.3 96 222-331 208-312 (366)
390 PF01729 QRPTase_C: Quinolinat 23.9 4.7E+02 0.01 22.5 9.1 83 226-326 67-155 (169)
391 PF11525 CopK: Copper resistan 23.8 70 0.0015 23.4 2.2 23 93-115 43-65 (73)
392 PF06673 L_lactis_ph-MCP: Lact 23.8 68 0.0015 28.5 2.6 31 79-109 271-301 (347)
393 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.8 5.9E+02 0.013 23.6 9.9 115 224-338 56-187 (275)
394 PRK00979 tetrahydromethanopter 23.6 6.6E+02 0.014 24.1 11.8 124 166-301 81-224 (308)
395 cd00958 DhnA Class I fructose- 23.5 3.8E+02 0.0082 23.9 7.6 73 264-337 82-177 (235)
396 TIGR01428 HAD_type_II 2-haloal 23.5 3.8E+02 0.0082 22.9 7.4 34 286-320 98-131 (198)
397 PRK09282 pyruvate carboxylase 23.4 3.9E+02 0.0086 28.0 8.5 113 225-338 62-192 (592)
398 PRK12290 thiE thiamine-phospha 23.1 2.3E+02 0.0049 28.6 6.3 56 265-325 271-326 (437)
399 COG2022 ThiG Uncharacterized e 23.1 3.5E+02 0.0076 24.9 6.9 63 263-326 143-211 (262)
400 PLN02428 lipoic acid synthase 23.0 7.1E+02 0.015 24.3 11.7 13 287-299 235-249 (349)
401 PRK11197 lldD L-lactate dehydr 23.0 7.4E+02 0.016 24.5 10.4 95 223-331 231-334 (381)
402 PRK09016 quinolinate phosphori 22.9 2.6E+02 0.0057 26.5 6.5 62 287-352 197-262 (296)
403 cd06831 PLPDE_III_ODC_like_AZI 22.9 7.3E+02 0.016 24.4 12.1 92 228-337 26-120 (394)
404 PRK14114 1-(5-phosphoribosyl)- 22.9 5.9E+02 0.013 23.2 11.5 68 259-327 145-224 (241)
405 TIGR02764 spore_ybaN_pdaB poly 22.9 2E+02 0.0043 24.8 5.5 33 272-307 98-130 (191)
406 TIGR00737 nifR3_yhdG putative 22.8 6.5E+02 0.014 23.8 9.6 58 225-294 180-237 (319)
407 cd08586 PI-PLCc_BcPLC_like Cat 22.8 1E+02 0.0022 29.0 3.7 38 71-108 32-69 (279)
408 PRK11572 copper homeostasis pr 22.7 6.1E+02 0.013 23.4 10.0 109 214-326 20-148 (248)
409 COG2089 SpsE Sialic acid synth 22.6 1.2E+02 0.0027 29.1 4.2 45 44-98 12-56 (347)
410 KOG0369 Pyruvate carboxylase [ 22.6 1.4E+02 0.0029 31.8 4.7 85 258-342 93-187 (1176)
411 PLN02331 phosphoribosylglycina 22.6 5.5E+02 0.012 22.9 8.4 45 286-331 39-91 (207)
412 PRK10840 transcriptional regul 22.6 5.1E+02 0.011 22.4 11.7 9 317-325 100-108 (216)
413 PF05690 ThiG: Thiazole biosyn 22.5 1.8E+02 0.0039 26.7 5.0 54 287-342 114-178 (247)
414 PRK00211 sulfur relay protein 22.5 81 0.0018 25.5 2.6 37 71-107 15-51 (119)
415 PRK13398 3-deoxy-7-phosphohept 22.5 1.6E+02 0.0034 27.5 4.9 42 75-133 214-255 (266)
416 TIGR01858 tag_bisphos_ald clas 22.4 6.6E+02 0.014 23.6 14.9 91 238-338 72-195 (282)
417 PF14871 GHL6: Hypothetical gl 22.3 96 0.0021 25.6 3.1 22 285-306 46-67 (132)
418 PF01729 QRPTase_C: Quinolinat 22.3 1.6E+02 0.0035 25.4 4.7 65 286-353 67-138 (169)
419 PRK08462 biotin carboxylase; V 21.9 5.6E+02 0.012 25.4 9.2 80 260-339 65-154 (445)
420 cd02930 DCR_FMN 2,4-dienoyl-Co 21.9 5.9E+02 0.013 24.5 9.0 103 226-331 191-311 (353)
421 PRK08999 hypothetical protein; 21.7 2.7E+02 0.0059 26.1 6.6 53 265-324 198-251 (312)
422 PF03599 CdhD: CO dehydrogenas 21.7 5.8E+02 0.013 25.2 8.8 36 201-238 85-120 (386)
423 PLN02705 beta-amylase 21.5 89 0.0019 32.6 3.2 29 298-326 257-288 (681)
424 TIGR01454 AHBA_synth_RP 3-amin 21.5 4.2E+02 0.009 22.8 7.3 16 287-302 82-97 (205)
425 PRK04452 acetyl-CoA decarbonyl 21.4 7.3E+02 0.016 23.8 9.2 17 318-334 289-305 (319)
426 PRK11596 cyclic-di-GMP phospho 21.3 2E+02 0.0042 26.2 5.3 46 286-333 199-247 (255)
427 TIGR01548 HAD-SF-IA-hyp1 haloa 21.3 4.4E+02 0.0096 22.6 7.4 35 286-321 112-146 (197)
428 PF09050 SNN_linker: Stannin u 21.2 72 0.0016 18.0 1.4 20 342-361 6-25 (26)
429 PLN02493 probable peroxisomal 21.2 7.9E+02 0.017 24.1 10.3 96 222-331 209-313 (367)
430 TIGR00514 accC acetyl-CoA carb 21.1 4.7E+02 0.01 26.0 8.4 80 260-339 63-152 (449)
431 COG5564 Predicted TIM-barrel e 21.0 1.4E+02 0.003 27.2 4.0 37 286-325 146-182 (276)
432 PRK05926 hypothetical protein; 20.9 6E+02 0.013 24.9 8.8 27 287-313 211-240 (370)
433 PLN02716 nicotinate-nucleotide 20.7 3.5E+02 0.0077 25.8 6.9 64 286-353 187-273 (308)
434 PF06574 FAD_syn: FAD syntheta 20.5 96 0.0021 26.4 2.8 12 313-324 69-80 (157)
435 TIGR02461 osmo_MPG_phos mannos 20.4 2E+02 0.0044 25.7 5.1 35 285-320 20-54 (225)
436 PRK07565 dihydroorotate dehydr 20.3 7.6E+02 0.016 23.6 10.7 39 287-326 229-268 (334)
437 PRK09997 hydroxypyruvate isome 20.3 4.3E+02 0.0094 23.9 7.4 44 258-301 15-58 (258)
438 PRK09195 gatY tagatose-bisphos 20.3 7.3E+02 0.016 23.4 14.7 110 201-323 29-172 (284)
439 PTZ00314 inosine-5'-monophosph 20.2 3.8E+02 0.0083 27.4 7.5 58 265-324 247-308 (495)
440 PRK00230 orotidine 5'-phosphat 20.0 6.5E+02 0.014 22.6 11.5 96 223-329 40-158 (230)
No 1
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=100.00 E-value=1.3e-51 Score=388.18 Aligned_cols=274 Identities=49% Similarity=0.738 Sum_probs=211.9
Q ss_pred EEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHH
Q 040734 49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLS 128 (361)
Q Consensus 49 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~ 128 (361)
||||||++.+..+.-..--..+||||++||++|++.|||+||+|||+||||++||+||.+++|+++|...++.|.++||+
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~~~~~V~dlT~~ 81 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGEVESSRIRDLTLA 81 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCCcCccchhhCcHH
Confidence 89999998864431000012578999999999999999999999999999999999999999999872223899999999
Q ss_pred HHhccCCccccccccccc-----cccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHH
Q 040734 129 EFLSYGPQREQGKIGKSL-----LRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVI 203 (361)
Q Consensus 129 eL~~l~~~~d~g~~~~~~-----~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v 203 (361)
||++| ++|.|+... ++........+|....+++||||+|+|++++.++.++||||.+............++
T Consensus 82 EL~~l----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~ 157 (282)
T cd08605 82 ELKAL----GPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPSLGFNIELKFGDDNKTEAEELVREL 157 (282)
T ss_pred HHHhc----cccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCCccEEEEEecCccccchHHHHHHHH
Confidence 99999 566554210 000001111112222468999999999999877899999997643211122233456
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc
Q 040734 204 QAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF 283 (361)
Q Consensus 204 ~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 283 (361)
+.++++++++++.++++|+||+++.|+.+++..|.+++++++........+.+..++..+..++...++.++++++..+.
T Consensus 158 ~~v~~~i~~~~~~~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (282)
T cd08605 158 RAILAVCKQHAPGRRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAIQVALEGGLQGIVSEVKVLL 237 (282)
T ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHHHHHHHcCCceEEecHHHhh
Confidence 88999999999889999999999999999999999999999864321122333344556667888899999998876545
Q ss_pred CChHHHHHHHHcCCEEEEeccC--CCHHHHHHHHHhcCccEEEeCCh
Q 040734 284 RNPGAVTKIKESKLSLLTYGRL--NNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 284 ~~~~~v~~~~~~Gl~v~~w~Tv--n~~~~~~~~~~~~GVdgI~TD~p 328 (361)
.++++++.+|++|+.|++| |+ |+++++.+++ ++||||||||++
T Consensus 238 ~~~~~v~~~~~~Gl~v~vW-Tv~~n~~~~~~~l~-~~GVdgIiTD~~ 282 (282)
T cd08605 238 RNPTAVSLVKASGLELGTY-GKLNNDAEAVERQA-DLGVDGVIVDHV 282 (282)
T ss_pred cCcHHHHHHHHcCcEEEEe-CCCCCCHHHHHHHH-HcCCCEEEeCCC
Confidence 6999999999999999999 88 9999999997 699999999985
No 2
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=100.00 E-value=7.6e-52 Score=383.46 Aligned_cols=246 Identities=17% Similarity=0.179 Sum_probs=190.2
Q ss_pred ceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccC
Q 040734 47 FLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELS 126 (361)
Q Consensus 47 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t 126 (361)
|++|||||+++ .+||||++||+.|+++|+|+||+|||+||||++||+||.+++|+|||. +.|+++|
T Consensus 1 p~viaHRG~~~-----------~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~l~R~t~~~---g~v~~~t 66 (263)
T cd08580 1 PLIVAHRGGTA-----------DAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTNGS---GAVSAYT 66 (263)
T ss_pred CeEEEcCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEeEECCCCCEEEeCCCchhcccCCC---CChhhCc
Confidence 57999999988 799999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHHH
Q 040734 127 LSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAI 206 (361)
Q Consensus 127 ~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~v 206 (361)
|+||+++ |+|+|+.+.++ .. + ...+++||||+|+|++++. +.++||||.+.. ..+++.+
T Consensus 67 ~~el~~l----d~g~~~~~~~~-----~~--~-~~~~~~iPtL~evl~~~~~-~~l~iEiK~~~~--------~~~~~~v 125 (263)
T cd08580 67 AAQLATL----NAGYNFKPEGG-----YP--Y-RGKPVGIPTLEQVLRAFPD-TPFILDMKSLPA--------DPQAKAV 125 (263)
T ss_pred HHHHhcC----CCccccccccC-----cc--c-CCCCCcCccHHHHHHhhcC-CeEEEEECCCCc--------HHHHHHH
Confidence 9999999 78988754321 10 1 1234689999999999985 889999997642 1578899
Q ss_pred HHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCC-------CCEEEEccCCCcccc-cccc------ccHHHHHHHHH--hc
Q 040734 207 LKIVFEFAENRPIIFSTFQPDAAVLIRKLQST-------YPVFFLTNGGTEIFY-DVRR------NSLEEAVKVCL--EG 270 (361)
Q Consensus 207 l~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~-------~~~~~l~~~~~~~~~-d~~~------~~l~~~~~~~~--~~ 270 (361)
+++++++++.++++++||++..|+.+++..|+ ++.+++......... .... ..+...+..+. ..
T Consensus 126 ~~~i~~~~~~~~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (263)
T cd08580 126 ARVLERENAWSRVRIYSTNADYQDALAPYPQARLFESRDVTRTRLANVAMAHQCDLPPDSGAWAGFELRRKVTVVETFTL 205 (263)
T ss_pred HHHHHhcCCCCCEEEEECCHHHHHHHHhcCcccccccHHHHHHHHHhhhcccccccCccchhhccccccccchheeeecc
Confidence 99999999999999999999999999999994 444444321100000 0000 00000001110 12
Q ss_pred CCcEEEcCCccccCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 271 GLQGIVSEVKGVFRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 271 ~~~~i~~~~~~~~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
++..+++++. ++++++|+.+|++ |++|++| |||++++|++++ ++||||||||+|+.+
T Consensus 206 ~~~~~~~~~~--l~t~~~V~~~h~~~gl~V~~W-TVN~~~~~~~l~-~~GVDgIiTD~P~~~ 263 (263)
T cd08580 206 GEGRSPVQAT--LWTPAAVDCFRRNSKVKIVLF-GINTADDYRLAK-CLGADAVMVDSPAAM 263 (263)
T ss_pred cccccccccc--cCCHHHHHHHHhcCCcEEEEE-EeCCHHHHHHHH-HcCCCEEEeCCcccC
Confidence 3323332233 4689999999999 9999999 999999999997 799999999999863
No 3
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=3.7e-50 Score=373.21 Aligned_cols=246 Identities=20% Similarity=0.296 Sum_probs=202.8
Q ss_pred eEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCC--cccccccccc
Q 040734 48 LVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNG--TIFEKRITEL 125 (361)
Q Consensus 48 ~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g--~~~~~~v~d~ 125 (361)
+||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|++ . +.|+++
T Consensus 2 ~iiaHRG~~~-----------~~pENT~~af~~A~~~G~d~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~---g~v~~~ 67 (256)
T cd08601 2 AVIAHRGASG-----------YAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTNIERP---GPVKDY 67 (256)
T ss_pred ceEEcCCCCC-----------CCCCchHHHHHHHHHcCCCEEEEEeeECCCCeEEEeCCCccccccCCCCC---ceeecC
Confidence 6899999987 79999999999999999999999999999999999999999999998 7 999999
Q ss_pred CHHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHH
Q 040734 126 SLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQA 205 (361)
Q Consensus 126 t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~ 205 (361)
|++||+++ +.|.|+.+.++..... ...++++|||+|+|++++++..++||+|.+... . .+++.
T Consensus 68 t~~el~~l----~~~~~~~~~~~~~~~~------~~~~~~iptL~evl~~~~~~~~l~IEiK~~~~~--~-----~~~~~ 130 (256)
T cd08601 68 TLAEIKQL----DAGSWFNKAYPEYARE------SYSGLKVPTLEEVIERYGGRANYYIETKSPDLY--P-----GMEEK 130 (256)
T ss_pred cHHHHHhc----CCCccccccCcccccc------ccCCccCCCHHHHHHHhccCceEEEEeeCCCCC--C-----CHHHH
Confidence 99999999 4666654332211100 135689999999999998788999999975421 1 35678
Q ss_pred HHHHHHHhcCC------CCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCC
Q 040734 206 ILKIVFEFAEN------RPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEV 279 (361)
Q Consensus 206 vl~~l~~~~~~------~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~ 279 (361)
++++++++++. ++++|+||++++++++++..|++|++++....... ......+..+.. ++.++++++
T Consensus 131 v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~ 203 (256)
T cd08601 131 LLATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGA------ETYDKWLDEIKE-YAIGIGPSI 203 (256)
T ss_pred HHHHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCccc------ccchhHHHHHHh-cCeEeCCch
Confidence 89999999877 89999999999999999999999999987542100 011223344444 666777665
Q ss_pred ccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHHHHH
Q 040734 280 KGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAV 335 (361)
Q Consensus 280 ~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l 335 (361)
.. .++++++.+|++|+.|++| |+|+++++.+++ ++|||||+||+|+.+++++
T Consensus 204 ~~--~~~~~v~~~~~~g~~v~~w-Tvn~~~~~~~l~-~~Gvd~IiTD~p~~~~~~~ 255 (256)
T cd08601 204 AD--ADPWMVHLIHKKGLLVHPY-TVNEKADMIRLI-NWGVDGMFTNYPDRLKEVL 255 (256)
T ss_pred hh--cCHHHHHHHHHCCCEEEEE-ecCCHHHHHHHH-hcCCCEEEeCCHHHHHHhh
Confidence 43 4899999999999999999 999999999997 6999999999999998775
No 4
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=4.5e-50 Score=371.01 Aligned_cols=237 Identities=22% Similarity=0.295 Sum_probs=194.1
Q ss_pred CcceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccc
Q 040734 45 PKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITE 124 (361)
Q Consensus 45 ~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d 124 (361)
+.|.+|||||+++ .+||||++||++|++.|+|+||+|||+|+||++||+||.+++|+|++. +.|++
T Consensus 6 ~~~~iiaHRG~~~-----------~~pENT~~Af~~A~~~G~d~vE~DV~lT~Dg~lVV~HD~~l~R~t~~~---~~v~~ 71 (249)
T PRK09454 6 PYPRIVAHRGGGK-----------LAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSNGW---GVAGE 71 (249)
T ss_pred CCCeEEECCCCCC-----------CCChHHHHHHHHHHHcCCCEEEEEeeECCCCCEEEECCCcccccCCCC---Cchhh
Confidence 3689999999987 799999999999999999999999999999999999999999999998 99999
Q ss_pred cCHHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCC-CCceEEEEEecCCccchhhhHHHHHH
Q 040734 125 LSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVD-PNVGFNVELKFDDHIVYEQDYLIRVI 203 (361)
Q Consensus 125 ~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~-~~~~l~iEiK~~~~~~~~~~~~~~~v 203 (361)
+||+||+++ +.|.|+.+. +.+++||||+|+|++++ .++.++||+|...... . ...
T Consensus 72 ~t~~el~~l----~~~~~~~~~--------------~~~~~iPtL~evl~~~~~~~~~l~iEiK~~~~~~-~-----~~~ 127 (249)
T PRK09454 72 LTWQDLAQL----DAGSWFSAA--------------FAGEPLPTLSQVAARCRAHGMAANIEIKPTTGRE-A-----ETG 127 (249)
T ss_pred CCHHHHHhc----CCCCccCCC--------------CCCCcCCCHHHHHHHHHhcCCEEEEEECCCCCcc-h-----hHH
Confidence 999999999 567665432 35688999999999986 4789999999643211 0 122
Q ss_pred HHHHHHHHHh--cCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc
Q 040734 204 QAILKIVFEF--AENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG 281 (361)
Q Consensus 204 ~~vl~~l~~~--~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~ 281 (361)
..+..++... +..++++|+||++..|+.+++..|++++++++..... .+ .......++..+++++..
T Consensus 128 ~~v~~~~~~~~~~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~--------~~---~~~~~~~~~~~~~~~~~~ 196 (249)
T PRK09454 128 RVVALAARALWAGAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPD--------DW---LELTRRLGCVSLHLNHKL 196 (249)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccc--------cH---HHHHHhcCCeEEeccccc
Confidence 2222223332 4457899999999999999999999999998753210 11 133456777778777654
Q ss_pred ccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHHHH
Q 040734 282 VFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEA 334 (361)
Q Consensus 282 ~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~ 334 (361)
.++++++.+|++|++|++| |||+++++.+++ ++|||||+||+|+.+...
T Consensus 197 --~~~~~v~~~~~~g~~v~~W-Tvn~~~~~~~l~-~~GVdgIiTD~p~~~~~~ 245 (249)
T PRK09454 197 --LDEARVAALKAAGLRILVY-TVNDPARARELL-RWGVDCICTDRIDLIGPD 245 (249)
T ss_pred --CCHHHHHHHHHCCCEEEEE-eCCCHHHHHHHH-HcCCCEEEeCChHhcCcc
Confidence 4999999999999999999 999999999997 799999999999987654
No 5
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.3e-49 Score=375.62 Aligned_cols=272 Identities=40% Similarity=0.623 Sum_probs=211.5
Q ss_pred eEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCc-------cccc
Q 040734 48 LVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGT-------IFEK 120 (361)
Q Consensus 48 ~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~-------~~~~ 120 (361)
+||||||++.++... .+..+||||++||++|+++|+|+||+|||+|+||++||+||.+++|++++. ..++
T Consensus 1 ~viaHRG~~~~~~~~---~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~~~~~~g~~~ 77 (293)
T cd08572 1 LVIGHRGLGKNYASG---SLAGIRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHDFTISVSEKSKTGSDEGELIEV 77 (293)
T ss_pred CceEecCCCCCcCcc---cccCcCcccHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCcceeecccccccccCcceee
Confidence 589999997311000 001699999999999999999999999999999999999999999998753 1347
Q ss_pred cccccCHHHHhccCCccccccccc---cc-cccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccc---
Q 040734 121 RITELSLSEFLSYGPQREQGKIGK---SL-LRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIV--- 193 (361)
Q Consensus 121 ~v~d~t~~eL~~l~~~~d~g~~~~---~~-~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~--- 193 (361)
.|.++|++||+++ ++|.|+. +. .++..+.....+....+++||||+|+|+++++++.++||||.+....
T Consensus 78 ~v~~lT~~eL~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~ 153 (293)
T cd08572 78 PIHDLTLEQLKEL----GLQHISALKRKALTRKAKGPKPNPWGMDEHDPFPTLQEVLEQVPKDLGFNIEIKYPQLLEDGE 153 (293)
T ss_pred ehhhCcHHHHHhc----cccccccccccccccccccCCccccchhhccCCCCHHHHHHhCCCccceEEEEecCCcccccc
Confidence 8999999999999 5666532 11 11111111111122356899999999999987889999999765321
Q ss_pred ---hhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCc--cccccccccHHHHHHHHH
Q 040734 194 ---YEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTE--IFYDVRRNSLEEAVKVCL 268 (361)
Q Consensus 194 ---~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~--~~~d~~~~~l~~~~~~~~ 268 (361)
........+++.++++++++++.++++++||+++.|+.+++..|++|+++++..... .+.+.+...+.....+++
T Consensus 154 ~~~~~~~~~~~~~~~vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (293)
T cd08572 154 GELTPYFERNAFVDTILAVVFEHAGGRRIIFSSFDPDICIMLRLKQNKYPVLFLTNGGTNEVEHMDPRRRSLQAAVNFAL 233 (293)
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHhhCccCCEEEEecCCCCcccccchhhhhHHHHHHHHH
Confidence 011123468899999999999999999999999999999999999999999864331 112333334566678888
Q ss_pred hcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccC--CCHHHHHHHHHhcCccEEEeCCh
Q 040734 269 EGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRL--NNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tv--n~~~~~~~~~~~~GVdgI~TD~p 328 (361)
..++.++++.+..+..++++|+.+|++|+.|++| |+ |+++++.++. ++|||||+||+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~w-Tv~~n~~~~~~~l~-~~GVdgIiTD~~ 293 (293)
T cd08572 234 AEGLLGVVLHAEDLLKNPSLISLVKALGLVLFTY-GDDNNDPENVKKQK-ELGVDGVIYDRV 293 (293)
T ss_pred HCCCeEEEechHHhhcCcHHHHHHHHcCcEEEEE-CCCCCCHHHHHHHH-HcCCCEEEecCC
Confidence 8999998887766556899999999999999999 99 9999999986 799999999986
No 6
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=100.00 E-value=2.2e-49 Score=373.71 Aligned_cols=266 Identities=33% Similarity=0.505 Sum_probs=208.6
Q ss_pred ceEEEecCCCCCCCCcchhhhcccc--------cchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccc
Q 040734 47 FLVVGHRGHGMNVLQSSDKRMQAIK--------ENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIF 118 (361)
Q Consensus 47 ~~iiaHRG~~~~~~~~~~~~~~~~p--------ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~ 118 (361)
++||||||+++ .+| |||++||++|+++|+|+||+|||+||||++||+||.+++|+ ++.
T Consensus 2 ~~iiaHRG~~~-----------~~p~~~~~~~pENTl~af~~A~~~g~d~vE~DV~lTkDg~~VV~HD~~l~rt-~~~-- 67 (286)
T cd08606 2 VQVIGHRGLGK-----------NTAERKSLQLGENTVESFILAASLGASYVEVDVQLTKDLVPVIYHDFLVSET-GTD-- 67 (286)
T ss_pred ceEEEeCCCCC-----------CcccccccCcCcchHHHHHHHHHcCCCEEEEEEEEccCCEEEEeCCCeeccC-CCC--
Confidence 68999999988 567 99999999999999999999999999999999999999985 665
Q ss_pred cccccccCHHHHhccCCcccccc-ccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchh--
Q 040734 119 EKRITELSLSEFLSYGPQREQGK-IGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYE-- 195 (361)
Q Consensus 119 ~~~v~d~t~~eL~~l~~~~d~g~-~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~-- 195 (361)
+.|.++|++||++++.. +.+. |+...|.....| ....++||||+|+|+.++.++.++||||.+......
T Consensus 68 -~~v~~lt~~eL~~ld~~-~~~~~~~~~~~~~~~~g------~~~~~~iptL~evl~~~~~~~~l~IEiK~~~~~~~~~~ 139 (286)
T cd08606 68 -VPIHDLTLEQFLHLSRM-KYTVDFKKKGFKGNSRG------HSIQAPFTTLEELLKKLPKSVGFNIELKYPMLHEAEEE 139 (286)
T ss_pred -CccccCCHHHHHhhhcc-cccccccccCCCCcccc------cccccCCCcHHHHHHhCCCccceEEEEecCCcchhhhc
Confidence 89999999999998421 1222 111111000000 011257999999999998788999999986432100
Q ss_pred -----hhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhc
Q 040734 196 -----QDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEG 270 (361)
Q Consensus 196 -----~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~ 270 (361)
..+.+.+++.++++++++++.++++|+||+++.|+.+++..|++|++++.........+.+...+.....++...
T Consensus 140 ~~~~~~~~~~~~~~~v~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (286)
T cd08606 140 EVAPVAIELNAFVDTVLEKVFDYGAGRNIIFSSFTPDICILLSLKQPGYPVLFLTEAGKAPDMDVRAASLQEAIRFAKQW 219 (286)
T ss_pred ccccchhHHHHHHHHHHHHHHhcCCCCceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCCccCCchhhcHHHHHHHHHHC
Confidence 012346788999999999998999999999999999999999999999976432222222223345556777888
Q ss_pred CCcEEEcCCccccCChHHHHHHHHcCCEEEEeccC--CCHHHHHHHHHhcCccEEEeCChHHHHHHHH
Q 040734 271 GLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRL--NNVAEAVYMQHLMGIDGVIVDLVQEITEAVY 336 (361)
Q Consensus 271 ~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tv--n~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~ 336 (361)
++.++++.......++++|+.+|++|+.|++| || |+++++++++ .+||||||||+|+.+++.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~W-Tv~~n~~~~~~~l~-~~GVdgIiTD~p~~~~~~~~ 285 (286)
T cd08606 220 NLLGLVSAAEPLVMCPRLIQVVKRSGLVCVSY-GVLNNDPENAKTQV-KAGVDAVIVDSVLAIRRGLT 285 (286)
T ss_pred CCeEEEechHHhhhChHHHHHHHHCCcEEEEE-CCccCCHHHHHHHH-HcCCCEEEECCHHHHHHHhc
Confidence 88888765554456899999999999999999 99 9999999997 69999999999999998764
No 7
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=100.00 E-value=7.5e-50 Score=378.92 Aligned_cols=250 Identities=19% Similarity=0.302 Sum_probs=195.4
Q ss_pred CcceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccc
Q 040734 45 PKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITE 124 (361)
Q Consensus 45 ~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d 124 (361)
..++||||||+++ .+||||++||+.|++.|||+||+|||+|+||++||+||.+++|+|+|. +.|++
T Consensus 25 ~~~~iiAHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVV~HD~~l~Rtt~~~---g~V~~ 90 (300)
T cd08612 25 FPCRHISHRGGSG-----------ENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLRSCGVD---KLVSD 90 (300)
T ss_pred CCCCEEECCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEeeECcCCeEEEECCccccccCCCC---ccccc
Confidence 4789999999988 799999999999999999999999999999999999999999999998 99999
Q ss_pred cCHHHHhccCCc----cccccccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHH
Q 040734 125 LSLSEFLSYGPQ----REQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLI 200 (361)
Q Consensus 125 ~t~~eL~~l~~~----~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~ 200 (361)
+|++||+++... ...|.|+. ....+++||||+|+|++++ ++.++||||.+..
T Consensus 91 ~t~~eL~~l~~~~~~~~~~~~~~~--------------~~~~g~~IPtL~EvL~~~~-~~~lnIEiK~~~~--------- 146 (300)
T cd08612 91 LNYADLPPYLEKLEVTFSPGDYCV--------------PKGSDRRIPLLEEVFEAFP-DTPINIDIKVEND--------- 146 (300)
T ss_pred CCHHHHhhccccccccccCCcccc--------------ccCCCCCCCCHHHHHHhCC-CCeEEEEECCCch---------
Confidence 999999999321 11122211 1246789999999999996 6899999997642
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCC----------CccccccccccHHH--HHHHHH
Q 040734 201 RVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGG----------TEIFYDVRRNSLEE--AVKVCL 268 (361)
Q Consensus 201 ~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~----------~~~~~d~~~~~l~~--~~~~~~ 268 (361)
.+++.++++++++++.++++++||+++.|+.+++..|+++++++.... ...+.......+.. ......
T Consensus 147 ~~~~~v~~~i~~~~~~~~v~isSF~~~~L~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (300)
T cd08612 147 ELIKKVSDLVRKYKREDITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFLK 226 (300)
T ss_pred HHHHHHHHHHHHcCCCCcEEEEeCCHHHHHHHHHhCCCccEEechHHHHHHHHHHHcccCccccCccccccccchhhhhh
Confidence 467889999999999999999999999999999999999999864320 00000000000000 000001
Q ss_pred hc---------CCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHHHHHH
Q 040734 269 EG---------GLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVY 336 (361)
Q Consensus 269 ~~---------~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~ 336 (361)
.. +.....+++ ...++++|+.+|++|+.|++| |||+++++.+++ ++||||||||+|+.+.+++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~G~~v~vW-TVNd~~~~~~l~-~~GVdgIiTD~P~~l~~~l~ 299 (300)
T cd08612 227 TYFPKSMSRLNRFVLFLIDW--LLMRPSLFRHLQKRGIQVYGW-VLNDEEEFERAF-ELGADGVMTDYPTKLREFLD 299 (300)
T ss_pred hcccccccccccceeccccc--ccCCHHHHHHHHHCCCEEEEe-ecCCHHHHHHHH-hcCCCEEEeCCHHHHHHHHh
Confidence 11 112222222 245899999999999999999 999999999997 69999999999999988775
No 8
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2e-49 Score=370.01 Aligned_cols=247 Identities=23% Similarity=0.265 Sum_probs=206.6
Q ss_pred CcceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcc--------cccCCc
Q 040734 45 PKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIV--------SEDNGT 116 (361)
Q Consensus 45 ~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~--------r~t~g~ 116 (361)
..|+||||||+++. ..+||||++||++|++.|+|+||+|||+||||++||+||.+++ |++++.
T Consensus 2 ~~~~iiaHRG~~~~---------~~~pENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~~~~~~~~ 72 (265)
T cd08564 2 VRPIIVGHRGAGCS---------TLYPENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHGTEDDTNPDTSIQLDDSGF 72 (265)
T ss_pred CCceEEEeCCCCCC---------CCCCchhHHHHHHHHHcCCCEEEEeeEECCCCCEEEEcCCccccCccccccccCCCc
Confidence 56899999999872 1389999999999999999999999999999999999998655 467777
Q ss_pred cccccccccCHHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhh
Q 040734 117 IFEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQ 196 (361)
Q Consensus 117 ~~~~~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~ 196 (361)
+.|+++|++||+++ ++|+|+.+... . .....+++||||+|+|+++++++.++||||.+..
T Consensus 73 ---~~v~~~t~~el~~l----~~~~~~~~~~~----~----~~~~~~~~iptL~evl~~~~~~~~l~iEiK~~~~----- 132 (265)
T cd08564 73 ---KNINDLSLDEITRL----HFKQLFDEKPC----G----ADEIKGEKIPTLEDVLVTFKDKLKYNIELKGREV----- 132 (265)
T ss_pred ---cchhhCcHHHHhhc----ccCcccccCcc----c----ccccCCccCCCHHHHHHHhccCcEEEEEeCCCch-----
Confidence 99999999999999 67777643200 0 0123568999999999999888999999997641
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCEEEEcCCH-HHHHHHHHHCCC---CCEEEEccCCCccccccccccHHHHHHHHHhcCC
Q 040734 197 DYLIRVIQAILKIVFEFAENRPIIFSTFQP-DAAVLIRKLQST---YPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGL 272 (361)
Q Consensus 197 ~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~-~~l~~l~~~~p~---~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~ 272 (361)
.+++.++++++++++.++++|+||++ +.++++++..|+ +++++++..... ..+.+....++..++
T Consensus 133 ----~~~~~v~~~l~~~~~~~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~ 201 (265)
T cd08564 133 ----GLGERVLNLVEKYGMILQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKS-------PSPLDFLEQAKYYNA 201 (265)
T ss_pred ----hHHHHHHHHHHHcCCCCCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCC-------cccccHHHHHHhcCC
Confidence 57789999999999999999999999 999999999998 999999854321 012233455667788
Q ss_pred cEEEcCCccccCChHHHHHHHHcCCEEEEecc----CCCHHHHHHHHHhcCccEEEeCChHHHHHHH
Q 040734 273 QGIVSEVKGVFRNPGAVTKIKESKLSLLTYGR----LNNVAEAVYMQHLMGIDGVIVDLVQEITEAV 335 (361)
Q Consensus 273 ~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~T----vn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l 335 (361)
.++.+++..+ ++++|+.+|++|+.|++| | +|+++++++++ .+|||||+||+|+.+.+++
T Consensus 202 ~~v~~~~~~~--~~~~v~~~~~~Gl~v~~w-T~~~~~n~~~~~~~l~-~~GvdgiiTD~p~~~~~~~ 264 (265)
T cd08564 202 TWVNFSYDFW--TEEFVKKAHENGLKVMTY-FDEPVNDNEEDYKVYL-ELGVDCICPNDPVLLVNFL 264 (265)
T ss_pred ceeeechhhh--hHHHHHHHHHcCCEEEEe-cCCCCCCCHHHHHHHH-HcCCCEEEcCCHHHHHHhh
Confidence 8888876654 899999999999999999 8 78899999987 6999999999999999876
No 9
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=100.00 E-value=1.7e-49 Score=362.65 Aligned_cols=227 Identities=23% Similarity=0.360 Sum_probs=195.6
Q ss_pred EEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHH
Q 040734 49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLS 128 (361)
Q Consensus 49 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~ 128 (361)
||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. +.|+++||+
T Consensus 1 iiaHRG~~~-----------~~pENT~~af~~A~~~gad~iE~Dv~~TkDg~lvv~HD~~l~r~t~~~---~~i~~lt~~ 66 (229)
T cd08562 1 IIAHRGASS-----------LAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTNGS---GAVTELTWA 66 (229)
T ss_pred CEeCCCCCC-----------CCCchHHHHHHHHHHcCCCEEEEEEeECCCCCEEEEcCCCCccccCCC---ceeecCcHH
Confidence 699999987 799999999999999999999999999999999999999999999987 999999999
Q ss_pred HHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCC-CCceEEEEEecCCccchhhhHHHHHHHHHH
Q 040734 129 EFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVD-PNVGFNVELKFDDHIVYEQDYLIRVIQAIL 207 (361)
Q Consensus 129 eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~-~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl 207 (361)
||++++ .+.|+.+ .+.++++|||+|+|++++ .++.++||+|.+... ...+++.++
T Consensus 67 el~~l~----~~~~~~~--------------~~~~~~iptl~evl~~~~~~~~~l~iEiK~~~~~------~~~~~~~v~ 122 (229)
T cd08562 67 ELAQLD----AGSWFSP--------------EFAGEPIPTLADVLELARELGLGLNLEIKPDPGD------EALTARVVA 122 (229)
T ss_pred HHhhcC----CCcccCC--------------CCCCCCCCCHHHHHHHHHhcCCEEEEEECCCCCc------cHHHHHHHH
Confidence 999994 4554332 135688999999999997 478999999986532 125678899
Q ss_pred HHHHHhcCC-CCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCCh
Q 040734 208 KIVFEFAEN-RPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNP 286 (361)
Q Consensus 208 ~~l~~~~~~-~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 286 (361)
+++++++.. +|++|+||+++.++.+++..|+++++++..... .....++...++.++++++.. .++
T Consensus 123 ~~l~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~--~~~ 189 (229)
T cd08562 123 AALRELWPHASKLLLSSFSLEALRAARRAAPELPLGLLFDTLP-----------ADWLELLAALGAVSIHLNYRG--LTE 189 (229)
T ss_pred HHHHHhcCCcCCEEEECCCHHHHHHHHHhCCCCcEEEEecCCC-----------cCHHHHHHHcCCeEEecChhh--CCH
Confidence 999999985 999999999999999999999999999875321 112244566778888877664 489
Q ss_pred HHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 287 GAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 287 ~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
++|+.+|++|+.|++| |+|+++++.+++ .+|||||+||+|
T Consensus 190 ~~v~~~~~~g~~v~~w-Tvn~~~~~~~~~-~~gVdgiiTD~p 229 (229)
T cd08562 190 EQVKALKDAGYKLLVY-TVNDPARAAELL-EWGVDAIFTDRP 229 (229)
T ss_pred HHHHHHHHCCCEEEEE-eCCCHHHHHHHH-HCCCCEEEcCCC
Confidence 9999999999999999 999999999997 699999999997
No 10
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=100.00 E-value=1.2e-49 Score=363.15 Aligned_cols=220 Identities=26% Similarity=0.368 Sum_probs=188.1
Q ss_pred eEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCH
Q 040734 48 LVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSL 127 (361)
Q Consensus 48 ~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~ 127 (361)
+||||||+++ .+||||++||++|++.|+|+||+|||+|+||++||+||.+++|+|+|. +.|+++|+
T Consensus 1 ~iiaHRG~~~-----------~~pENTl~af~~A~~~Gad~iE~DV~lT~Dg~~Vv~HD~~l~R~t~~~---g~v~~~t~ 66 (226)
T cd08568 1 IILGHRGYRA-----------KYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGGVD---LKVKELTY 66 (226)
T ss_pred CEEeccCCCC-----------CCCcchHHHHHHHHHcCcCEEEEEEEEcCCCCEEEECCCcccccCCCC---ceeecCCH
Confidence 4899999987 799999999999999999999999999999999999999999999998 99999999
Q ss_pred HHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHHHH
Q 040734 128 SEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAIL 207 (361)
Q Consensus 128 ~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl 207 (361)
+||++++. .+++||||+|+|++++++..++||||.+. .++.++
T Consensus 67 ~eL~~l~~--------------------------~g~~iPtL~evl~~~~~~~~l~iEiK~~~-----------~~~~~~ 109 (226)
T cd08568 67 KELKKLHP--------------------------GGELIPTLEEVFRALPNDAIINVEIKDID-----------AVEPVL 109 (226)
T ss_pred HHHhhCCC--------------------------CCCcCCCHHHHHHhcCCCcEEEEEECCcc-----------HHHHHH
Confidence 99999842 25789999999999987789999999742 356788
Q ss_pred HHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc-----
Q 040734 208 KIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV----- 282 (361)
Q Consensus 208 ~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~----- 282 (361)
++++++++.++++++||+++.++.+++..|+++++++...... ......+....++.++++++...
T Consensus 110 ~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (226)
T cd08568 110 EIVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEE---------GFSIPELHEKLKLYSLHVPIDAIGYIGF 180 (226)
T ss_pred HHHHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeecccc---------ccCHHHHHHhcCCcEeccchhhhccccc
Confidence 9999999989999999999999999999999999999854221 01112344566777776654322
Q ss_pred cCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHH
Q 040734 283 FRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQE 330 (361)
Q Consensus 283 ~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~ 330 (361)
..++++++.+|++|+.|++| |||++++++++. .+ ||||+||+|+.
T Consensus 181 ~~~~~~v~~~~~~G~~v~~W-Tvn~~~~~~~l~-~~-vdgiiTD~p~~ 225 (226)
T cd08568 181 EKFVELLRLLRKLGLKIVLW-TVNDPELVPKLK-GL-VDGVITDDVEK 225 (226)
T ss_pred cccHHHHHHHHHCCCEEEEE-cCCCHHHHHHHH-hh-CCEEEccCccc
Confidence 12589999999999999999 999999998885 45 99999999975
No 11
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=100.00 E-value=4.1e-49 Score=373.34 Aligned_cols=256 Identities=15% Similarity=0.141 Sum_probs=200.3
Q ss_pred CCCcceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccc----
Q 040734 43 RIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIF---- 118 (361)
Q Consensus 43 ~~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~---- 118 (361)
..+.+.||||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|||...
T Consensus 19 ~~~~~~IiAHRGa~~-----------~aPENTl~AF~~A~~~Gad~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~~~~~~ 87 (316)
T cd08610 19 LGPKPTIIGHRGAPM-----------LAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTLKRTTNIGEVQPES 87 (316)
T ss_pred cCCCCeEEECCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEEEccCCCEEEeCCCccccccCCCCccccc
Confidence 344678999999998 79999999999999999999999999999999999999999999998510
Q ss_pred -cccccccCHHHHhccCCccccccccccccccccCCc-ccc--cccccCCcccCHHHHHHhCCC-CceEEEEEecCCc-c
Q 040734 119 -EKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGK-ILH--WNVEIDDSLCTLQEAFQQVDP-NVGFNVELKFDDH-I 192 (361)
Q Consensus 119 -~~~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~-~~~--~~~~~~~~iptL~EvL~~~~~-~~~l~iEiK~~~~-~ 192 (361)
++.|.++||+||+++ |+|+||.+.+.. ..++ .+. .....+++||||+|+|++++. +..++||||.+.. .
T Consensus 88 ~~~~V~~~TlaEL~~l----d~g~wf~~~~~~-~~~~~~~~~~~~~~~~e~IPTLeEvL~~~~~~~~~l~IEIK~~~~~~ 162 (316)
T cd08610 88 ACENPAFFNWDFLSTL----NAGKWFVKPRPF-YNMKPLSEADKERARNQSIPKLSNFLRLAEKENKLVIFDLYRPPPKH 162 (316)
T ss_pred cccchhhCCHHHHhhC----CCCCccCccccc-ccccccccccccccCCCCCCCHHHHHHHhHhcCceEEEEeCCCcccC
Confidence 136999999999999 789998642110 0000 000 012357899999999999984 6889999997522 2
Q ss_pred chhhhHHHHHHHHHHHHH-HHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcC
Q 040734 193 VYEQDYLIRVIQAILKIV-FEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGG 271 (361)
Q Consensus 193 ~~~~~~~~~~v~~vl~~l-~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~ 271 (361)
++. ..+++.+++.+ +++++.+++++ ||+...++.+++..|+++.++.... .+ ......+
T Consensus 163 ~~~----~~~~~~v~~~i~~~~~~~~~~v~-sf~~~~l~~~~~~~P~~~~~l~~~~-----------~~----~~l~~~~ 222 (316)
T cd08610 163 PYR----HTWIRRVLEVILNEVGIEQHLVL-WLPAHDRQYVQSVAPGFKQHVGRKV-----------PI----ETLLKNN 222 (316)
T ss_pred cch----hHHHHHHHHHHHHHcCCCCCEEE-EcCHHHHHHHHHHCcchhhhhcccc-----------cH----HHHHHcC
Confidence 221 13566677775 67788777776 5899999999999999886543210 11 2234567
Q ss_pred CcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHHHHHHHh
Q 040734 272 LQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDM 338 (361)
Q Consensus 272 ~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~~~ 338 (361)
+.++++++..+ ++++++.+|++|++|++| |||+++++.+++ ++||||||||+|+.+.++.+.+
T Consensus 223 ~~~l~~~~~~l--~~~~v~~a~~~Gl~V~vW-TVNd~~~~~~l~-~~GVDgIiTD~P~~l~~~~~~~ 285 (316)
T cd08610 223 ISILNLAYKKL--FSNDIRDYKAANIHTNVY-VINEPWLFSLAW-CSGIHSVTTNNIHLLKQLDHPH 285 (316)
T ss_pred CeEEccchhhC--CHHHHHHHHHCCCEEEEE-CCCCHHHHHHHH-hCCcCEEEeCCHHHHHHhhchh
Confidence 88888877654 899999999999999999 999999999997 7999999999999998766544
No 12
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=100.00 E-value=6.8e-49 Score=371.17 Aligned_cols=267 Identities=30% Similarity=0.456 Sum_probs=205.8
Q ss_pred eEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCcc-------ccc
Q 040734 48 LVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTI-------FEK 120 (361)
Q Consensus 48 ~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~-------~~~ 120 (361)
+.|||||++.++++.. +.+||||++||+.|+++|+|+||+|||+||||++||+||.+++|++++.. .++
T Consensus 1 ~~iaHRG~~~~~~~~~----~~~PENTl~af~~A~~~Gad~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~~~~~~~~~~ 76 (290)
T cd08607 1 LDVGHRGAGNSYTAAS----AVVRENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDFTLRVSLKSKGDSDRDDLLEV 76 (290)
T ss_pred CceecCCCCcCccccc----CCCCccHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCeeEeeccCccccCccceEEE
Confidence 4699999963211100 17999999999999999999999999999999999999999999988741 124
Q ss_pred cccccCHHHHhccCCcccccc---ccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccch---
Q 040734 121 RITELSLSEFLSYGPQREQGK---IGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVY--- 194 (361)
Q Consensus 121 ~v~d~t~~eL~~l~~~~d~g~---~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~--- 194 (361)
.|.++||+||+++ ++|. |+.+.+..... .+....+++||||+|+|++++.++.++||||.+.....
T Consensus 77 ~v~~lt~~eL~~l----~~~~~~~~~~~~~~~~~~----~~~~~~~~~iPtL~evl~~~~~~~~lnIEiK~~~~~~~~~~ 148 (290)
T cd08607 77 PVKDLTYEQLKLL----KLFHISALKVKEYKSVEE----DEDPPEHQPFPTLSDVLESVPEDVGFNIEIKWPQQQKDGSW 148 (290)
T ss_pred ecccCCHHHHhhc----Cccccccccccccccccc----ccccccccCCCCHHHHHHhCCCccceEEEEecCcccccccc
Confidence 8999999999999 4543 33322211000 00112467899999999999888999999997642100
Q ss_pred -----hhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCc---cccccccccHHHHHHH
Q 040734 195 -----EQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTE---IFYDVRRNSLEEAVKV 266 (361)
Q Consensus 195 -----~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~---~~~d~~~~~l~~~~~~ 266 (361)
+..+.+.+++.+++.+.+++..++++|+||++.+|+.+++..|++|+++++..... .+.+.+..++..+..+
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~v~isSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (290)
T cd08607 149 ESELFTYFDRNLFVDIILKIVLEHAGKRRIIFSSFDADICTMLRFKQNKYPVLFLTQGKTQRYPEFMDLRTRTFEIAVNF 228 (290)
T ss_pred ccccccccchhHHHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHhCcCCCEEEEecCCCCccccccchHHHhHHHHHHH
Confidence 01123457889999999998888999999999999999999999999999864321 1223333334456677
Q ss_pred HHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccC--CCHHHHHHHHHhcCccEEEeCCh
Q 040734 267 CLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRL--NNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 267 ~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tv--n~~~~~~~~~~~~GVdgI~TD~p 328 (361)
+...++.+++++....+.++++++.+|++|+.|++| |+ |+++++.+++ .+||||||||++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~w-Tv~~n~~~~~~~l~-~~GVdgIiTD~~ 290 (290)
T cd08607 229 AQAEELLGVNLHSEDLLKDPSQIELAKSLGLVVFCW-GDDLNDPENRKKLK-ELGVDGLIYDRI 290 (290)
T ss_pred HHHcCCceeEechhhhhcChHHHHHHHHcCCEEEEE-CCCCCCHHHHHHHH-HcCCCEEEecCC
Confidence 777888888777665567999999999999999999 99 9999999987 799999999985
No 13
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=5.5e-49 Score=359.12 Aligned_cols=227 Identities=21% Similarity=0.238 Sum_probs=183.6
Q ss_pred EEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHH
Q 040734 49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLS 128 (361)
Q Consensus 49 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~ 128 (361)
||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. +.|.++|++
T Consensus 1 iiaHRG~~~-----------~~PENTl~Af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~---~~v~~~t~~ 66 (229)
T cd08581 1 LVAHRGYPA-----------RYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTGVE---GLLHELEDA 66 (229)
T ss_pred CEeCCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEECCCccccccCCC---ceeccCCHH
Confidence 689999988 799999999999999999999999999999999999999999999998 999999999
Q ss_pred HHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCC--CceEEEEEecCCccchhhhHHHHHHHHH
Q 040734 129 EFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDP--NVGFNVELKFDDHIVYEQDYLIRVIQAI 206 (361)
Q Consensus 129 eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v~~v 206 (361)
||+++.. +.|+|+.+ .+.+++||||+|+|++++. ++.++||+|.+... ++ .....+..+
T Consensus 67 el~~l~~--~~~~~~~~--------------~~~~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~-~~--~~~~~v~~~ 127 (229)
T cd08581 67 ELDSLRV--AEPARFGS--------------RFAGEPLPSLAAVVQWLAQHPQVTLFVEIKTESLD-RF--GLERVVDKV 127 (229)
T ss_pred HHhhccc--ccCccccc--------------ccCCccCCCHHHHHHHHhhCCCceEEEEecCCccc-cc--chhHHHHHH
Confidence 9999954 34555432 2367899999999999874 68999999976421 11 112334444
Q ss_pred HHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCCh
Q 040734 207 LKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNP 286 (361)
Q Consensus 207 l~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 286 (361)
++.+.. ..++++++||++..|+.+++. |.++++++..... ......+...++.++++++. + .
T Consensus 128 ~~~~~~--~~~~~~i~SF~~~~l~~~r~~-~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~--~- 189 (229)
T cd08581 128 LRALPA--VAAQRVLISFDYDLLALAKQQ-GGPRTGWVLPDWD-----------DASLAEADELQPDYLFCDKN-L--L- 189 (229)
T ss_pred HHHHHh--ccCCeEEEeCCHHHHHHHHhc-CCCCeEEEeccCC-----------hHHHHHHHhhCCCEEecccc-c--C-
Confidence 443322 568999999999999999999 9999998874211 11123455678888887765 2 3
Q ss_pred HHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 287 GAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 287 ~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
..++.+|++|++|++| |||+++++++++ ++||||||||+|
T Consensus 190 ~~v~~~~~~G~~v~vW-TVn~~~~~~~l~-~~GVdgiiTD~P 229 (229)
T cd08581 190 PDTGDLWAGTWKWVIY-EVNEPAEALALA-ARGVALIETDNI 229 (229)
T ss_pred hhhHHHHhCCceEEEE-EcCCHHHHHHHH-HhCCcEEEcCCC
Confidence 4578899999999999 999999999997 799999999998
No 14
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=6.3e-49 Score=360.12 Aligned_cols=232 Identities=19% Similarity=0.205 Sum_probs=190.7
Q ss_pred EEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHH
Q 040734 49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLS 128 (361)
Q Consensus 49 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~ 128 (361)
||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|+|. +.|+++|++
T Consensus 1 iiaHRG~~~-----------~~pENTl~af~~A~~~G~d~iE~DV~~TkDg~~Vv~HD~~l~r~t~~~---g~v~~~t~~ 66 (235)
T cd08565 1 IAGHRGGRN-----------LWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTHGT---GAVRDLTLA 66 (235)
T ss_pred CEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEeEEEccCCCEEEECCChhhcccCCC---CceeeccHH
Confidence 689999987 799999999999999999999999999999999999999999999998 999999999
Q ss_pred HHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCC-CCceEEEEEecCCc-cchhhhHHHHHHHHH
Q 040734 129 EFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVD-PNVGFNVELKFDDH-IVYEQDYLIRVIQAI 206 (361)
Q Consensus 129 eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~-~~~~l~iEiK~~~~-~~~~~~~~~~~v~~v 206 (361)
||+++ ++|.| .+++||||+|+|++++ .++.++||+|.+.. ..+ ..+++.+
T Consensus 67 el~~l----~~~~~-------------------~~~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~-----~~~~~~v 118 (235)
T cd08565 67 ERKAL----RLRDS-------------------FGEKIPTLEEVLALFAPSGLELHVEIKTDADGTPY-----PGAAALA 118 (235)
T ss_pred HHhcC----CCCCC-------------------CCCCCCCHHHHHHHhhccCcEEEEEECCCCCCCcc-----HHHHHHH
Confidence 99999 44543 2578999999999997 57899999997631 111 2578889
Q ss_pred HHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCCh
Q 040734 207 LKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNP 286 (361)
Q Consensus 207 l~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 286 (361)
+++++++++.++++|+||+++.|+++++. |+++++++.........+ .. .....+...++.++.+++.....++
T Consensus 119 ~~~i~~~~~~~~v~~~Sf~~~~l~~~~~~-p~~~~~~l~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (235)
T cd08565 119 AATLRRHGLLERSVLTSFDPAVLTEVRKH-PGVRTLGSVDEDMLERLG----GE-LPFLTATALKAHIVAVEQSLLAATW 192 (235)
T ss_pred HHHHHhCCCcCCEEEEECCHHHHHHHHhC-CCCcEEEEeccccccccc----cc-cchhhhhhccCcEEccCcccccCCH
Confidence 99999999999999999999999999999 999999987532110000 00 0011233455665555655334588
Q ss_pred HHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 287 GAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 287 ~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
++++.+| +|++|++| |||+++++.+++ .+||||||||+|+.+
T Consensus 193 ~~v~~~~-~g~~v~~W-TVn~~~~~~~l~-~~GVdgIiTD~P~~~ 234 (235)
T cd08565 193 ELVRAAV-PGLRLGVW-TVNDDSLIRYWL-ACGVRQLTTDRPDLA 234 (235)
T ss_pred HHHHHHh-CCCEEEEE-ccCCHHHHHHHH-HcCCCEEEeCCcccc
Confidence 9999987 49999999 999999999997 699999999999864
No 15
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=100.00 E-value=6.5e-49 Score=363.66 Aligned_cols=239 Identities=17% Similarity=0.188 Sum_probs=191.6
Q ss_pred cceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccc-----
Q 040734 46 KFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEK----- 120 (361)
Q Consensus 46 ~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~----- 120 (361)
+|+||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+||+. +
T Consensus 1 ~~~iiAHRG~~~-----------~aPENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~---g~~~~~ 66 (252)
T cd08574 1 KPALIGHRGAPM-----------LAPENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVA---DVFPER 66 (252)
T ss_pred CCeEEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEeEccCCcEEEeCCCcccccCCCC---cccccc
Confidence 368999999988 799999999999999999999999999999999999999999999986 5
Q ss_pred ---cccccCHHHHhccCCccccccccccccccc--cC-CcccccccccCCcccCHHHHHHhCC-CCceEEEEEecCCcc-
Q 040734 121 ---RITELSLSEFLSYGPQREQGKIGKSLLRKT--KD-GKILHWNVEIDDSLCTLQEAFQQVD-PNVGFNVELKFDDHI- 192 (361)
Q Consensus 121 ---~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~--~~-g~~~~~~~~~~~~iptL~EvL~~~~-~~~~l~iEiK~~~~~- 192 (361)
.|.++||+||++| ++|+||.+..+.. .. ... ....+.+++||||+|+|++++ .++.++||||.+...
T Consensus 67 ~~~~v~~~T~~eL~~l----d~g~~f~~~~~~~~~~~~~~~-~~~~~~~~~IPtL~evl~~~~~~~~~l~iEiK~~~~~~ 141 (252)
T cd08574 67 AHERASMFTWTDLQQL----NAGQWFLKDDPFWTASSLSES-DREEAGNQSIPSLAELLRLAKKHNKSVIFDLRRPPPNH 141 (252)
T ss_pred cccchhcCCHHHHhhC----CCCCcccCCCccchhcccccc-hhhhcCCCCCCCHHHHHHHHHHcCCeEEEEecCCcccC
Confidence 6899999999999 7898875421100 00 000 001246789999999999997 478899999975421
Q ss_pred chhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCC
Q 040734 193 VYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGL 272 (361)
Q Consensus 193 ~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~ 272 (361)
++. ..++++++++++++++..+++++||+.. ++.+++..|+++++++... .. ......++
T Consensus 142 ~~~----~~~~~~v~~~l~~~~~~~~~v~~s~~~~-~~~~~~~~p~~~~~~~~~~-----------~~----~~~~~~~~ 201 (252)
T cd08574 142 PYY----QSYVNITLDTILASGIPQHQVFWLPDEY-RALVRKVAPGFQQVSGRKL-----------PV----ESLRENGI 201 (252)
T ss_pred ccH----HHHHHHHHHHHHHcCCCcccEEEccHHH-HHHHHHHCCCCeEeecccc-----------ch----HHHHhcCC
Confidence 111 2578899999999998777777776654 7999999999998864321 11 12335678
Q ss_pred cEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 273 QGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 273 ~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
.++++++.. +++++|+.+|++|+.|++| |||+++++.+++ ++||||||||-
T Consensus 202 ~~~~~~~~~--~~~~~v~~~~~~g~~v~~W-TVn~~~~~~~l~-~~GVdgIiTD~ 252 (252)
T cd08574 202 SRLNLEYSQ--LSAQEIREYSKANISVNLY-VVNEPWLYSLLW-CSGVQSVTTNA 252 (252)
T ss_pred eEEccCccc--CCHHHHHHHHHCCCEEEEE-ccCCHHHHHHHH-HcCCCEEecCc
Confidence 888887765 4899999999999999999 999999999997 69999999993
No 16
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=100.00 E-value=1.4e-48 Score=357.19 Aligned_cols=229 Identities=23% Similarity=0.378 Sum_probs=197.4
Q ss_pred ceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccC
Q 040734 47 FLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELS 126 (361)
Q Consensus 47 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t 126 (361)
++||||||+++ .+||||++||++|++.||++||+|||+||||++||+||.++.|+|++. +.|+++|
T Consensus 1 ~~iiaHRG~~~-----------~~pENT~~Af~~A~~~g~~~vE~DV~~TkDg~~Vv~HD~~l~r~t~~~---~~i~~~t 66 (230)
T cd08563 1 TLIFAHRGYSG-----------TAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIHDETVDRTTNGK---GYVKDLT 66 (230)
T ss_pred CeEEEccCCCC-----------CCCchhHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCcccccCCC---CchhhCC
Confidence 47999999987 799999999999999999999999999999999999999999999987 9999999
Q ss_pred HHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCC-CCceEEEEEecCCccchhhhHHHHHHHH
Q 040734 127 LSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVD-PNVGFNVELKFDDHIVYEQDYLIRVIQA 205 (361)
Q Consensus 127 ~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~-~~~~l~iEiK~~~~~~~~~~~~~~~v~~ 205 (361)
|+||++++ .+.++.+ ...++++|||+|+|++++ +++.++||+|.+... + ..+++.
T Consensus 67 ~~el~~l~----~~~~~~~--------------~~~~~~iptL~evl~~~~~~~~~l~leiK~~~~~-~-----~~~~~~ 122 (230)
T cd08563 67 LEELKKLD----AGSWFDE--------------KFTGEKIPTLEEVLDLLKDKDLLLNIEIKTDVIH-Y-----PGIEKK 122 (230)
T ss_pred HHHHHhcC----CCCccCc--------------cCCCCcCCCHHHHHHHHHhcCcEEEEEECCCCCc-C-----hhHHHH
Confidence 99999995 3333211 124678999999999998 589999999986431 1 246788
Q ss_pred HHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCC
Q 040734 206 ILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRN 285 (361)
Q Consensus 206 vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 285 (361)
++++++++++.++++++||+++.++.+++..|++++++++.... .....++...++.++++++.. .+
T Consensus 123 l~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~-----------~~~~~~~~~~~~~~v~~~~~~--~~ 189 (230)
T cd08563 123 VLELVKEYNLEDRVIFSSFNHESLKRLKKLDPKIKLALLYETGL-----------QDPKDYAKKIGADSLHPDFKL--LT 189 (230)
T ss_pred HHHHHHHcCCCCCEEEEcCCHHHHHHHHHHCCCCcEEEEecCcc-----------cCHHHHHHHhCCEEEccCchh--cC
Confidence 99999999999999999999999999999999999999875421 123456667777788777653 58
Q ss_pred hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 286 PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
+++++.+|++|+.|++| |+|+++++.+++ .+|||||+||+|
T Consensus 190 ~~~i~~~~~~g~~v~~W-tvn~~~~~~~~~-~~GVdgi~TD~P 230 (230)
T cd08563 190 EEVVEELKKRGIPVRLW-TVNEEEDMKRLK-DLGVDGIITNYP 230 (230)
T ss_pred HHHHHHHHHCCCEEEEE-ecCCHHHHHHHH-HCCCCEEeCCCC
Confidence 99999999999999999 999999999997 699999999998
No 17
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=100.00 E-value=1.7e-48 Score=369.39 Aligned_cols=248 Identities=15% Similarity=0.190 Sum_probs=197.2
Q ss_pred cceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccc-----
Q 040734 46 KFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEK----- 120 (361)
Q Consensus 46 ~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~----- 120 (361)
.+.||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|||. +
T Consensus 26 ~~~IIAHRGas~-----------~aPENTl~AF~~Ai~~GaD~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~---g~~~~~ 91 (315)
T cd08609 26 KPALVGHRGAPM-----------LAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTNVK---DVFPGR 91 (315)
T ss_pred CCeEEECCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEeCCCcccccCCCC---CCcccc
Confidence 579999999988 799999999999999999999999999999999999999999999986 5
Q ss_pred ---cccccCHHHHhccCCccccccccccccc--ccc-CCcccccccccCCcccCHHHHHHhCCC-CceEEEEEecCCccc
Q 040734 121 ---RITELSLSEFLSYGPQREQGKIGKSLLR--KTK-DGKILHWNVEIDDSLCTLQEAFQQVDP-NVGFNVELKFDDHIV 193 (361)
Q Consensus 121 ---~v~d~t~~eL~~l~~~~d~g~~~~~~~~--~~~-~g~~~~~~~~~~~~iptL~EvL~~~~~-~~~l~iEiK~~~~~~ 193 (361)
.|.++|++||+++ ++|+||.+.++ +.+ ...+. .....+++||||+|+|+++++ ++.++||||.....
T Consensus 92 ~~~~V~dlTlaEL~~l----d~g~wf~~~~~~~~~~~~~~~~-~~~~~ge~IPTL~EvL~~~~~~~~~l~IEIK~~~~~- 165 (315)
T cd08609 92 DAAGSNNFTWTELKTL----NAGSWFLERRPFWTLSSLSEED-RREADNQTVPSLSELLDLAKKHNVSIMFDLRNENNS- 165 (315)
T ss_pred ccccHhhCCHHHHhhC----CCCcccCccccccccccccccc-ccccCCCCCCCHHHHHHHHHhcCCEEEEEeCCCCCC-
Confidence 3899999999999 78888754310 000 00000 001357899999999999974 78899999975321
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCc
Q 040734 194 YEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQ 273 (361)
Q Consensus 194 ~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~ 273 (361)
......+.+.+++.++++++..+.++ +++...++.+++..|+++.++.... .....++.
T Consensus 166 --~~~~~~f~~~vl~~i~~~~~~~~~v~-~~~~~~l~~~~~~~P~~~~~~~~~~------------------~~~~~~~~ 224 (315)
T cd08609 166 --HVFYSSFVFYTLETILKLGIPPDKVW-WLPDEYRHDVMKMEPGFKQVYGRQK------------------EMLMDGGN 224 (315)
T ss_pred --CccHHHHHHHHHHHHHHcCCCcceEE-EeCHHHHHHHHHhCcCceeecccch------------------hhHhcCCe
Confidence 11123677889999999986533333 3478899999999999998653210 01124667
Q ss_pred EEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHHHHHHHh
Q 040734 274 GIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDM 338 (361)
Q Consensus 274 ~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~~~ 338 (361)
++++++.. +++++++.+|++|++|++| |||++.++++++ ++||||||||+|+.+.+.++.+
T Consensus 225 ~i~~~~~~--l~~~~v~~~~~~G~~v~vW-TVNd~~~~~~l~-~~GVDgIiTD~P~~l~~~~~~~ 285 (315)
T cd08609 225 FMNLPYQD--LSALEIKELRKDNVSVNLW-VVNEPWLFSLLW-CSGVSSVTTNACQLLKDMSKPI 285 (315)
T ss_pred EEeccccc--CCHHHHHHHHHCCCEEEEE-CCCCHHHHHHHH-hcCCCEEEcCCHHHHHHhhhhh
Confidence 78777765 4899999999999999999 999999999997 6999999999999999888765
No 18
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=100.00 E-value=1.9e-48 Score=372.72 Aligned_cols=250 Identities=17% Similarity=0.221 Sum_probs=199.8
Q ss_pred cceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccc---
Q 040734 46 KFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRI--- 122 (361)
Q Consensus 46 ~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v--- 122 (361)
+|+||||||+++ .+||||++||++|++.|||+||+|||+||||++||+||.+++|+||+. +.|
T Consensus 1 ~p~IIAHRGas~-----------~aPENTL~AF~~A~~~GaD~IElDV~lTkDGvlVV~HD~tL~RtTn~~---g~v~~~ 66 (351)
T cd08608 1 KPAIIGHRGAPM-----------LAPENTLMSFQKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNVD---RVFPER 66 (351)
T ss_pred CCeEEEcCCCCC-----------CCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccccCCC---Cccccc
Confidence 468999999998 799999999999999999999999999999999999999999999997 665
Q ss_pred -----cccCHHHHhccCCccccccccccc--cccccCCcccccccccCCcccCHHHHHHhCCC-CceEEEEEecCCc-cc
Q 040734 123 -----TELSLSEFLSYGPQREQGKIGKSL--LRKTKDGKILHWNVEIDDSLCTLQEAFQQVDP-NVGFNVELKFDDH-IV 193 (361)
Q Consensus 123 -----~d~t~~eL~~l~~~~d~g~~~~~~--~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~-~~~l~iEiK~~~~-~~ 193 (361)
+++||+||+++ |+|+||.+. |++.+...+.......+++||||+|+|+++++ +..++||||.+.. .+
T Consensus 67 ~~~~~~~~TlaEL~~L----daG~wf~~~~p~~~~~~~~~~~~~~~~ge~IPTL~EvL~~~~~~~~~l~iEIK~~~~~~~ 142 (351)
T cd08608 67 QYEDASMFNWTDLERL----NAGQWFLKDDPFWTAQSLSPSDRKEAGNQSVCSLAELLELAKRYNASVLLNLRRPPPNHP 142 (351)
T ss_pred cccccccCCHHHHhhC----CCCcccccCCccccccccccccccccCCCCCCCHHHHHHHHHhcCCeEEEEECCCcccCc
Confidence 67999999999 789988532 22221111111223567899999999999974 6789999997531 11
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCC-CCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCC
Q 040734 194 YEQDYLIRVIQAILKIVFEFAEN-RPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGL 272 (361)
Q Consensus 194 ~~~~~~~~~v~~vl~~l~~~~~~-~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~ 272 (361)
+. ..+++.+++++.+++.. ++++++||+. ++.+++..|+++.+.... .....++..++
T Consensus 143 ~~----~~~~~~v~~~i~~~~~~~~~vi~sSf~~--~~~vr~l~P~~~~~~~~~---------------~~~~~~~~~~~ 201 (351)
T cd08608 143 YH----QSWINLTLKTILASGIPQEQVMWTPDWQ--RKLVRKVAPGFQQTSGEK---------------LPVASLRERGI 201 (351)
T ss_pred ch----hHHHHHHHHHHHHhCCCcCeEEEEcchH--HHHHHHHCCCCeeecccc---------------chHHHHHHcCC
Confidence 11 24667788888888864 5788888876 478999999988642110 11233456788
Q ss_pred cEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHHHHHHHh
Q 040734 273 QGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDM 338 (361)
Q Consensus 273 ~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~~~ 338 (361)
.++++++.. +++++++.+|++|+.|++| |||+++++.+++ ++||||||||+|+.+.+....+
T Consensus 202 ~~l~~~~~~--lt~~~v~~~~~~Gl~V~vW-TVN~~~~~~~l~-~~GVdgIiTD~P~~l~~l~~~~ 263 (351)
T cd08608 202 TRLNLRYTQ--ASAQEIRDYSASNLSVNLY-TVNEPWLYSLLW-CSGVPSVTSDASHVLRKVPFPL 263 (351)
T ss_pred eEEccchhh--cCHHHHHHHHHCCCEEEEE-ecCCHHHHHHHH-HCCCCEEEECCHHHHHHhhhhh
Confidence 888888775 4999999999999999999 999999999986 7999999999999999877654
No 19
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.8e-48 Score=357.11 Aligned_cols=230 Identities=23% Similarity=0.338 Sum_probs=194.9
Q ss_pred EEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHH
Q 040734 49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLS 128 (361)
Q Consensus 49 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~ 128 (361)
||||||+++ .+||||++||++|++.|+++||+|||+||||++||+||.+++|+|++. +.|+++||+
T Consensus 1 iiaHRG~~~-----------~~pENTl~af~~A~~~G~~~vE~Dv~lTkDg~~Vv~HD~~l~r~t~~~---~~i~~~t~~ 66 (233)
T cd08582 1 VIAHRGASA-----------EAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSGGD---GAVSDLTLA 66 (233)
T ss_pred CEeCCCCCC-----------CCCchHHHHHHHHHHcCCCEEEEEEEEccCCCEEEecCCccccccCCC---cchhhCCHH
Confidence 699999988 699999999999999999999999999999999999999999999987 999999999
Q ss_pred HHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCC-CceEEEEEecCCccchhhhHHHHHHHHHH
Q 040734 129 EFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDP-NVGFNVELKFDDHIVYEQDYLIRVIQAIL 207 (361)
Q Consensus 129 eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~-~~~l~iEiK~~~~~~~~~~~~~~~v~~vl 207 (361)
||++++ .+.|+.. .+.+++||||+|+|+++++ ++.++||+|.+.. . ..+++.++
T Consensus 67 el~~l~----~~~~~~~--------------~~~~~~iptL~evl~~~~~~~~~l~ieiK~~~~---~----~~~~~~~~ 121 (233)
T cd08582 67 ELRKLD----IGSWKGE--------------SYKGEKVPTLEEYLAIVPKYGKKLFIEIKHPRR---G----PEAEEELL 121 (233)
T ss_pred HHhcCC----CCcccCC--------------CCCCCcCCCHHHHHHHHHhcCceEEEEeCCCcc---C----ccHHHHHH
Confidence 999984 4444321 2356899999999999985 7999999997511 1 25788899
Q ss_pred HHHHHhc-CCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCCh
Q 040734 208 KIVFEFA-ENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNP 286 (361)
Q Consensus 208 ~~l~~~~-~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 286 (361)
+++++++ ..++++++||++..++.+++..|+++++++....... .....++...++.++.+++.. ..++
T Consensus 122 ~~~~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~i~~~~~~-~~~~ 191 (233)
T cd08582 122 KLLKESGLLPEQIVIISFDAEALKRVRELAPTLETLWLRNYKSPK---------EDPRPLAKSGGAAGLDLSYEK-KLNP 191 (233)
T ss_pred HHHHHcCCCCCCEEEEecCHHHHHHHHHHCCCCcEEEEeccCccc---------cchhHHHHhhCceEEcccccc-cCCH
Confidence 9999994 6789999999999999999999999999987543210 001123455677888877654 2589
Q ss_pred HHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChH
Q 040734 287 GAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQ 329 (361)
Q Consensus 287 ~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~ 329 (361)
++++.+|++|++|++| |+|+.+++++++ .+|||||+||+|+
T Consensus 192 ~~v~~~~~~G~~v~~w-Tvn~~~~~~~l~-~~GVdgi~TD~p~ 232 (233)
T cd08582 192 AFIKALRDAGLKLNVW-TVDDAEDAKRLI-ELGVDSITTNRPG 232 (233)
T ss_pred HHHHHHHHCCCEEEEE-eCCCHHHHHHHH-HCCCCEEEcCCCC
Confidence 9999999999999999 999999999997 6999999999996
No 20
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=100.00 E-value=8e-49 Score=371.21 Aligned_cols=255 Identities=20% Similarity=0.235 Sum_probs=195.9
Q ss_pred ceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCcc---------
Q 040734 47 FLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTI--------- 117 (361)
Q Consensus 47 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~--------- 117 (361)
|+||||||+++ .+||||++||++|++.|||+||+|||+||||++||+||.+|+|+||+..
T Consensus 1 p~iiAHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~~~~~~ 69 (296)
T cd08559 1 PLVIAHRGASG-----------YAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPFRGRKD 69 (296)
T ss_pred CeEEEeCCcCC-----------CCccchHHHHHHHHHhCCCEEEEeeEEccCCCEEEeccchhhcCCCccccccccccCC
Confidence 68999999988 7999999999999999999999999999999999999999999998851
Q ss_pred ccccccccCHHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCC-------CceEEEEEecCC
Q 040734 118 FEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDP-------NVGFNVELKFDD 190 (361)
Q Consensus 118 ~~~~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~-------~~~l~iEiK~~~ 190 (361)
.++.|.++|++||+++ ++|+|+.+.+..... ....+++||||+|+|++++. ++.++||||.+.
T Consensus 70 ~~~~v~~~t~~eL~~l----~~~~~~~~~~~~~~~------~~~~~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~ 139 (296)
T cd08559 70 TGYFVIDFTLAELKTL----RAGSWFNQRYPERAP------SYYGGFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPT 139 (296)
T ss_pred CCeeeecCcHHHHhcC----CCCCcccccccccCc------cccCCCCcCCHHHHHHHHHhhhhccCCcceEEEEecChh
Confidence 1178999999999999 678776543321100 01356899999999999975 689999999753
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhcCC---CCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCcccc----ccccccHHHH
Q 040734 191 HIVYEQDYLIRVIQAILKIVFEFAEN---RPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFY----DVRRNSLEEA 263 (361)
Q Consensus 191 ~~~~~~~~~~~~v~~vl~~l~~~~~~---~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~----d~~~~~l~~~ 263 (361)
..... ...+++.++++++++++. ++++++||+++.|+++++..|+++++++......... +.........
T Consensus 140 ~~~~~---~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 216 (296)
T cd08559 140 FHKQE---GPDIEEKLLEVLKKYGYTGKNDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAG 216 (296)
T ss_pred hhhhc---CCCHHHHHHHHHHHcCCCCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCCCccccccccchhcCHHH
Confidence 21000 014678899999999887 8999999999999999999999999999764321000 0000000111
Q ss_pred HHHHHhcCCcEEEcCCccc--------cCChHHHHHHHHcCCEEEEeccCCC---------HHHHHHHHHhc-CccEEEe
Q 040734 264 VKVCLEGGLQGIVSEVKGV--------FRNPGAVTKIKESKLSLLTYGRLNN---------VAEAVYMQHLM-GIDGVIV 325 (361)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~--------~~~~~~v~~~~~~Gl~v~~w~Tvn~---------~~~~~~~~~~~-GVdgI~T 325 (361)
+..+.. ++.++++++..+ ..++++|+.+|++|+.|++| |||+ ++++.+++ .+ |||||||
T Consensus 217 ~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~W-Tvn~~~~~~~~~~~~~~~~l~-~~~GVdgIiT 293 (296)
T cd08559 217 LKEIAK-YADGIGPWKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPY-TFRNENLFLAPDFKQDMDALY-NAAGVDGVFT 293 (296)
T ss_pred HHHHHH-HhhhhCCCHHhccccccccccCchHHHHHHHHcCCEEEEE-EecCcccccccccccCHHHHH-HHhCCCEEEc
Confidence 222211 455666555433 11389999999999999999 9999 99999987 68 9999999
Q ss_pred CCh
Q 040734 326 DLV 328 (361)
Q Consensus 326 D~p 328 (361)
|+|
T Consensus 294 D~P 296 (296)
T cd08559 294 DFP 296 (296)
T ss_pred CCC
Confidence 997
No 21
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=100.00 E-value=1e-48 Score=364.75 Aligned_cols=248 Identities=21% Similarity=0.278 Sum_probs=190.7
Q ss_pred ceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccC
Q 040734 47 FLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELS 126 (361)
Q Consensus 47 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t 126 (361)
|++|||||+++ .+||||++||++|+++|+|+||+|||+|+||++||+||.+++|+|+|. +.|+++|
T Consensus 1 p~iiaHRG~~~-----------~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~---~~v~~~t 66 (264)
T cd08575 1 PLHIAHRGGAA-----------EFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTGGS---GLVSDLT 66 (264)
T ss_pred CeEEEeCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEEcCCcccceeCCc---eEEecCC
Confidence 68999999988 799999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHHH
Q 040734 127 LSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAI 206 (361)
Q Consensus 127 ~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~v 206 (361)
++||+++ ++|.|+.+. +|.........+++||||+|+|+.++. +.++||+|.+.. ..+++.+
T Consensus 67 ~~el~~l----~~~~~~~~~-----~~~~~~~~~~~~~~iptL~evl~~~~~-~~l~iEiK~~~~--------~~~~~~v 128 (264)
T cd08575 67 YAELPPL----DAGYGYTFD-----GGKTGYPRGGGDGRIPTLEEVFKAFPD-TPINIDIKSPDA--------EELIAAV 128 (264)
T ss_pred HHHHHhc----ccCCccccC-----CCCcccccCCCCCcCCcHHHHHHhCCC-CeEEEEECCCCH--------HHHHHHH
Confidence 9999999 566665321 111111123467899999999999975 899999997642 2578899
Q ss_pred HHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccc-----cc-cccccHHH-HHHHH--------HhcC
Q 040734 207 LKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIF-----YD-VRRNSLEE-AVKVC--------LEGG 271 (361)
Q Consensus 207 l~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~-----~d-~~~~~l~~-~~~~~--------~~~~ 271 (361)
+++++++++.++++++||+++.++++++..|+++.+++.......+ .. ........ ..... ...+
T Consensus 129 ~~~i~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (264)
T cd08575 129 LDLLEKYKREDRTVWGSTNPEYLRALHPENPNLFESFSMTRCLLLYLALGYTGLLPFVPIKESFFEIPRPVIVLETFTLG 208 (264)
T ss_pred HHHHHhccccceEEEEeCCHHHHHHHHHhCcccccccCchhHHHHHHHhheeccCCCCCCCceEEEeecccEEEEEeccc
Confidence 9999999999999999999999999999999977655432110000 00 00000000 00000 0112
Q ss_pred CcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHH
Q 040734 272 LQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQE 330 (361)
Q Consensus 272 ~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~ 330 (361)
+.++.+++. +.++++|+.+|++|++|++| |||+++++++++ ++||||||||+|+.
T Consensus 209 ~~~~~~~~~--~~~~~~v~~~~~~G~~v~vW-TVNd~~~~~~l~-~~GVdgIiTD~P~~ 263 (264)
T cd08575 209 EGASIVAAL--LWWPNLFDHLRKRGIQVYLW-VLNDEEDFEEAF-DLGADGVMTDSPTK 263 (264)
T ss_pred cccchhhhh--hcCHHHHHHHHhcCCcEEEE-EECCHHHHHHHH-hcCCCEEEeCCccc
Confidence 223333333 35899999999999999999 999999999997 69999999999985
No 22
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=100.00 E-value=7.5e-48 Score=349.97 Aligned_cols=219 Identities=19% Similarity=0.237 Sum_probs=189.4
Q ss_pred EEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHH
Q 040734 49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLS 128 (361)
Q Consensus 49 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~ 128 (361)
||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. +.|.++|++
T Consensus 1 iiaHRG~~~-----------~~pENT~~af~~A~~~Gad~vE~DV~~T~Dg~~vv~HD~~l~r~t~~~---~~v~~~t~~ 66 (220)
T cd08579 1 IIAHRGVSS-----------NGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAGVN---KKVWDLTLE 66 (220)
T ss_pred CeeccCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCchhhccCCC---CChhhCCHH
Confidence 699999988 799999999999999999999999999999999999999999999987 999999999
Q ss_pred HHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCC-CceEEEEEecCCccchhhhHHHHHHHHHH
Q 040734 129 EFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDP-NVGFNVELKFDDHIVYEQDYLIRVIQAIL 207 (361)
Q Consensus 129 eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~-~~~l~iEiK~~~~~~~~~~~~~~~v~~vl 207 (361)
||++++ .+.| ..++++|||+|+|++++. ++.++||||.+... ...+++.++
T Consensus 67 el~~l~----~~~~------------------~~~~~iptL~evl~~~~~~~~~l~iEiK~~~~~------~~~~~~~v~ 118 (220)
T cd08579 67 ELKKLT----IGEN------------------GHGAKIPSLDEYLALAKGLKQKLLIELKPHGHD------SPDLVEKFV 118 (220)
T ss_pred HHhcCc----CccC------------------CCCCcCCCHHHHHHHhhccCCeEEEEECCCCCC------CHHHHHHHH
Confidence 999994 3322 245789999999999986 78999999986531 125788899
Q ss_pred HHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChH
Q 040734 208 KIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPG 287 (361)
Q Consensus 208 ~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~ 287 (361)
+.++++++.++++|+||++..++.+++..|+++++++..... .. ....++..+.+++.. .+++
T Consensus 119 ~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~--------~~-------~~~~~~~~~~~~~~~--~~~~ 181 (220)
T cd08579 119 KLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNI--------GN-------LPKTNVDFYSIEYST--LNKE 181 (220)
T ss_pred HHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCCeEEEEEeccc--------Cc-------ccccCceEEeeehhh--cCHH
Confidence 999999998999999999999999999999999998874321 00 123456666666554 4899
Q ss_pred HHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 288 AVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 288 ~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
+++.+|++|+.|++| |+|+++++++++ .+|||||+||+|
T Consensus 182 ~v~~~~~~G~~v~~w-tvn~~~~~~~~~-~~Gvd~i~TD~P 220 (220)
T cd08579 182 FIRQAHQNGKKVYVW-TVNDPDDMQRYL-AMGVDGIITDYP 220 (220)
T ss_pred HHHHHHHCCCEEEEE-cCCCHHHHHHHH-HcCCCEEeCCCC
Confidence 999999999999999 999999999997 799999999998
No 23
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.7e-47 Score=356.48 Aligned_cols=250 Identities=22% Similarity=0.295 Sum_probs=196.7
Q ss_pred eEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccc----cCCcc---ccc
Q 040734 48 LVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSE----DNGTI---FEK 120 (361)
Q Consensus 48 ~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~----t~g~~---~~~ 120 (361)
.||||||+++ .+||||++||++|++.|||+||+|||+||||++||+||.+++|+ ++|+. .++
T Consensus 2 ~iiaHRG~~~-----------~~pENT~~Af~~A~~~Gad~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~~~~~~~~~~~ 70 (263)
T cd08567 2 DLQGHRGARG-----------LLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDITRDPDGAWLPYEGP 70 (263)
T ss_pred ceEeccCCCC-----------CCCcchHHHHHHHHHcCCCEEEEEEEEcCCCCEEEeCCCccCcceeecCCCCcccccCc
Confidence 6999999988 69999999999999999999999999999999999999999964 34421 237
Q ss_pred cccccCHHHHhccCCccccccccccccccccCCcccccc-cccCCcccCHHHHHHhCCC----CceEEEEEecCCccchh
Q 040734 121 RITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWN-VEIDDSLCTLQEAFQQVDP----NVGFNVELKFDDHIVYE 195 (361)
Q Consensus 121 ~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~-~~~~~~iptL~EvL~~~~~----~~~l~iEiK~~~~~~~~ 195 (361)
.|+++|++||+++ +.|.|+... +.+..++.. ...+++||||+|+|++++. ++.++||+|.+......
T Consensus 71 ~v~~~t~~el~~l----~~~~~~~~~----~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~ 142 (263)
T cd08567 71 ALYELTLAEIKQL----DVGEKRPGS----DYAKLFPEQIPVPGTRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDIL 142 (263)
T ss_pred chhcCCHHHHHhc----CCCccccCc----CcccCCCccccCccccCCCHHHHHHHHHHhccCCceEEEEEcCCCCcccc
Confidence 8999999999999 455553110 001111111 1235899999999999984 58999999976432111
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEE
Q 040734 196 QDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGI 275 (361)
Q Consensus 196 ~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i 275 (361)
......+++.++++++++++.++++|+||+++.++.+++..|++++++++..... ..+. ..++..++..+
T Consensus 143 ~~~~~~~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~-------~~~~---~~~~~~~~~~~ 212 (263)
T cd08567 143 HPPPEEFVDAVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTL-------GNLP---RAAKKLGADIW 212 (263)
T ss_pred CccHHHHHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHHCCCccEEEEecCCcc-------cCHH---HHHHHhCCcEE
Confidence 1112367899999999999999999999999999999999999999998754210 0122 33456677777
Q ss_pred EcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHH
Q 040734 276 VSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQE 330 (361)
Q Consensus 276 ~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~ 330 (361)
.+.+. .+++++++.+|++|+.|++| |+|+++++.+++ ++|||||+||+|++
T Consensus 213 ~~~~~--~~~~~~i~~~~~~G~~v~vw-tvn~~~~~~~~~-~~Gvdgi~TD~P~~ 263 (263)
T cd08567 213 SPYFT--LVTKELVDEAHALGLKVVPW-TVNDPEDMARLI-DLGVDGIITDYPDL 263 (263)
T ss_pred ecchh--hcCHHHHHHHHHCCCEEEEe-cCCCHHHHHHHH-HcCCCEEEcCCCCC
Confidence 76554 35899999999999999999 999999999886 79999999999963
No 24
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=100.00 E-value=2.7e-47 Score=353.83 Aligned_cols=235 Identities=21% Similarity=0.326 Sum_probs=192.2
Q ss_pred EEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHH
Q 040734 49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLS 128 (361)
Q Consensus 49 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~ 128 (361)
||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. +.|+++||+
T Consensus 1 iiaHRG~~~-----------~~pENTl~af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~l~R~t~~~---g~v~~~t~~ 66 (258)
T cd08573 1 IIGHRGAGH-----------DAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTDGT---GLVAELTWE 66 (258)
T ss_pred CEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEeeECCCCcEEEECCCCcceecCCC---ceEecCcHH
Confidence 689999988 799999999999999999999999999999999999999999999998 999999999
Q ss_pred HHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCC-CCceEEEEEecCCccchhhhHHHHHHHHHH
Q 040734 129 EFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVD-PNVGFNVELKFDDHIVYEQDYLIRVIQAIL 207 (361)
Q Consensus 129 eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~-~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl 207 (361)
||+++ ++|.|+... ..+.+++||||+|+|++++ .++.++||+|.+.. .+++.++
T Consensus 67 el~~l----~~~~~~~~~------------~~~~~~~iptL~evl~~~~~~~~~l~iEiK~~~~---------~~~~~v~ 121 (258)
T cd08573 67 ELRKL----NAAAKHRLS------------SRFPGEKIPTLEEAVKECLENNLRMIFDVKSNSS---------KLVDALK 121 (258)
T ss_pred HHhhC----CCCCCCCCc------------cccCCCCCCCHHHHHHHHHhcCCEEEEEeCCCcH---------HHHHHHH
Confidence 99999 566553210 0135789999999999997 47899999997642 4678889
Q ss_pred HHHHHhc-CCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccc----cccc-cHH----HHHH----------HH
Q 040734 208 KIVFEFA-ENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYD----VRRN-SLE----EAVK----------VC 267 (361)
Q Consensus 208 ~~l~~~~-~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d----~~~~-~l~----~~~~----------~~ 267 (361)
+++++++ +.++++++||++..++++++..|++++++++........+ .+.. .+. .... ..
T Consensus 122 ~~l~~~~~~~~~v~v~SF~~~~l~~~~~~~p~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (258)
T cd08573 122 NLFKKYPGLYDKAIVCSFNPIVIYKVRKADPKILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWLP 201 (258)
T ss_pred HHHHHCCCccCCEEEEECCHHHHHHHHHhCCCceEEEecCcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999 8899999999999999999999999999987432100000 0000 000 0000 11
Q ss_pred HhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHh-cCccEEEeCC
Q 040734 268 LEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHL-MGIDGVIVDL 327 (361)
Q Consensus 268 ~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~-~GVdgI~TD~ 327 (361)
...++.++++++.. .++++++.+|++|++|++| |||+++++++++ + +||| ||||+
T Consensus 202 ~~~~~~~v~~~~~~--~~~~~v~~~~~~G~~v~vW-TVn~~~~~~~l~-~~~GVd-iiTD~ 257 (258)
T cd08573 202 YFLGVSALLIHKDD--ISSAYVRYWRARGIRVIAW-TVNTPTEKQYFA-KTLNVP-YITDS 257 (258)
T ss_pred hhcCeeEEEechHh--cCHHHHHHHHHCCCEEEEE-ecCCHHHHHHHH-HHhCCC-eecCC
Confidence 34677888877765 4999999999999999999 999999999997 8 9999 99997
No 25
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.7e-46 Score=347.31 Aligned_cols=244 Identities=22% Similarity=0.328 Sum_probs=193.0
Q ss_pred EEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHH
Q 040734 49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLS 128 (361)
Q Consensus 49 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~ 128 (361)
||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. +.|.++||+
T Consensus 1 iiaHRG~~~-----------~~pENT~~af~~A~~~g~d~vE~Dv~~TkDg~~Vv~HD~~l~r~t~~~---~~i~~~t~~ 66 (249)
T cd08561 1 VIAHRGGAG-----------LAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTDGT---GPVADLTLA 66 (249)
T ss_pred CcccCCCCC-----------CCCccHHHHHHHHHHhCCCEEEEEeeECCCCCEEEECCCccccccCCC---CchhhCCHH
Confidence 689999987 799999999999999999999999999999999999999999999987 999999999
Q ss_pred HHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHHHHH
Q 040734 129 EFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILK 208 (361)
Q Consensus 129 eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~ 208 (361)
||++++ .+.++.+ .+|+.++. ...++++|||+|+|++++ ++.++||+|.+.. .+++++++
T Consensus 67 el~~l~----~~~~~~~-----~~~~~~~~-~~~~~~iptL~evl~~~~-~~~~~ieiK~~~~---------~~~~~~~~ 126 (249)
T cd08561 67 ELRRLD----AGYHFTD-----DGGRTYPY-RGQGIRIPTLEELFEAFP-DVRLNIEIKDDGP---------AAAAALAD 126 (249)
T ss_pred HHhhcC----cCccccC-----cccccccc-CCCCccCCCHHHHHHhCc-CCcEEEEECCCch---------hHHHHHHH
Confidence 999995 3333211 11221111 134689999999999998 4899999998642 57889999
Q ss_pred HHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHH--HHHhcCCcEEEcCCc---ccc
Q 040734 209 IVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVK--VCLEGGLQGIVSEVK---GVF 283 (361)
Q Consensus 209 ~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~--~~~~~~~~~i~~~~~---~~~ 283 (361)
+++++++.++++++||+.+.++.+++..|+++++++...... +. ...... .....++.++.+++. ..+
T Consensus 127 ~l~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (249)
T cd08561 127 LIERYGAQDRVLVASFSDRVLRRFRRLCPRVATSAGEGEVAA-FV------LASRLGLGSLYSPPYDALQIPVRYGGVPL 199 (249)
T ss_pred HHHHcCCCCcEEEEECCHHHHHHHHHHCCCcceeccHHHHHH-HH------HHhhcccccccCCCCcEEEcCcccCCeec
Confidence 999999999999999999999999999999998876532100 00 000000 001123344444332 124
Q ss_pred CChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHHHHH
Q 040734 284 RNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAV 335 (361)
Q Consensus 284 ~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l 335 (361)
.++.+++.+|++|+.|++| |||+++++.+++ ++|||||+||+|+.+.+++
T Consensus 200 ~~~~~v~~~~~~G~~v~vW-TVN~~~~~~~l~-~~gVdgIiTD~p~~~~~~~ 249 (249)
T cd08561 200 VTPRFVRAAHAAGLEVHVW-TVNDPAEMRRLL-DLGVDGIITDRPDLLLEVL 249 (249)
T ss_pred CCHHHHHHHHHCCCEEEEE-ecCCHHHHHHHH-hcCCCEEEcCCHHHHHhhC
Confidence 5899999999999999999 999999999997 6999999999999988753
No 26
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=100.00 E-value=6e-47 Score=360.79 Aligned_cols=260 Identities=19% Similarity=0.177 Sum_probs=189.3
Q ss_pred ceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCcc---------
Q 040734 47 FLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTI--------- 117 (361)
Q Consensus 47 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~--------- 117 (361)
|+||||||+++ .+||||++||++|++.|+|+||||||+||||++||+||.+|+|+||+..
T Consensus 1 ~lviAHRG~s~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~ 69 (318)
T cd08600 1 KIIIAHRGASG-----------YLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAEKFPDRKRKD 69 (318)
T ss_pred CeEEEcCCCCC-----------CCCccHHHHHHHHHHcCCCEEEeeeeECcCCcEEEeCCchhhccCCcccccccccccC
Confidence 68999999988 7999999999999999999999999999999999999999999998431
Q ss_pred ccccccccCHHHHhccCCccccccccccc----cccccCCcccccccccCCcccCHHHHHHhCCC-------CceEEEEE
Q 040734 118 FEKRITELSLSEFLSYGPQREQGKIGKSL----LRKTKDGKILHWNVEIDDSLCTLQEAFQQVDP-------NVGFNVEL 186 (361)
Q Consensus 118 ~~~~v~d~t~~eL~~l~~~~d~g~~~~~~----~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~-------~~~l~iEi 186 (361)
-.+.|.++||+||++| ++|+||... +... .++... ...+++||||+|+|++++. ++.++|||
T Consensus 70 g~~~v~dlT~aEL~~l----d~g~~f~~~~~~~~~~~-~~~~~~--~~~~~~IptL~evl~~~~~~~~~~~~~~~l~iEi 142 (318)
T cd08600 70 GRYYVIDFTLDELKSL----SVTERFDIENGKKVQVY-PNRFPL--WKSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEI 142 (318)
T ss_pred CceeEeeCcHHHHhhC----CCCCCcccccccccccc-cccCcc--cCCCCccCCHHHHHHHHHHhhhhcCCcceEEEee
Confidence 0156999999999999 688887432 0000 000000 1256799999999998863 67899999
Q ss_pred ecCCccchhhhHHHHHHHHHHHHHHHhcCC---CCEEEEcCCHHHHHHHHH-HCC----CCCEEEEccCCCcccc-c---
Q 040734 187 KFDDHIVYEQDYLIRVIQAILKIVFEFAEN---RPIIFSTFQPDAAVLIRK-LQS----TYPVFFLTNGGTEIFY-D--- 254 (361)
Q Consensus 187 K~~~~~~~~~~~~~~~v~~vl~~l~~~~~~---~rv~~~Sf~~~~l~~l~~-~~p----~~~~~~l~~~~~~~~~-d--- 254 (361)
|.+...... ...+++.++++++++++. .+|+++||++..|+.+++ ..| ++++++++........ .
T Consensus 143 K~~~~~~~~---~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~ 219 (318)
T cd08600 143 KAPWFHHQE---GKDIAAATLEVLKKYGYTSKNDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDP 219 (318)
T ss_pred cCchhhhhc---cccHHHHHHHHHHHcCCCCCCCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCccccccc
Confidence 975311000 124788899999999974 489999999999999997 899 9999999752110000 0
Q ss_pred --cccccHHH-----HHHHHHhcCCcEEEcCCccc---------cCChHHHHHHHHcCCEEEEeccCCCHHH------HH
Q 040734 255 --VRRNSLEE-----AVKVCLEGGLQGIVSEVKGV---------FRNPGAVTKIKESKLSLLTYGRLNNVAE------AV 312 (361)
Q Consensus 255 --~~~~~l~~-----~~~~~~~~~~~~i~~~~~~~---------~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~------~~ 312 (361)
+....+.. .+... ...+.++++++..+ +.++++|+.+|++|+.|++| |||+++. +.
T Consensus 220 ~~~~~~~~~~~~~~~~l~~~-~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~w-Tvn~~~~~~~~~~~~ 297 (318)
T cd08600 220 GGWVNYDYDWMFTKGGLKEI-AKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPY-TVRKDALPEYAKDAD 297 (318)
T ss_pred CCccccchhhhcCHHHHHHH-HHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEE-eccCCccccccCCHH
Confidence 00000110 11111 22356666665532 23469999999999999999 9999862 33
Q ss_pred HH----HHhcCccEEEeCChH
Q 040734 313 YM----QHLMGIDGVIVDLVQ 329 (361)
Q Consensus 313 ~~----~~~~GVdgI~TD~p~ 329 (361)
++ +..+||||||||+|+
T Consensus 298 ~~~~~~l~~~GVDGiiTD~P~ 318 (318)
T cd08600 298 QLLDALLNKAGVDGVFTDFPD 318 (318)
T ss_pred HHHHHHHHhcCCcEEEcCCCC
Confidence 32 236999999999995
No 27
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=100.00 E-value=6.4e-47 Score=358.14 Aligned_cols=256 Identities=16% Similarity=0.166 Sum_probs=187.7
Q ss_pred ceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccc--------
Q 040734 47 FLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIF-------- 118 (361)
Q Consensus 47 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~-------- 118 (361)
|+||||||+++ .+||||++||++|+++|||+||+|||+||||++||+||.+|+|+||+...
T Consensus 1 p~iiaHRG~~~-----------~~PENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~ 69 (302)
T cd08571 1 PLVIARGGASG-----------DYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIASVFPKRKKTY 69 (302)
T ss_pred CeEEeCCCcCC-----------CCCcchHHHHHHHHHcCCCEEEeeeeEcCCCcEEEeCCchhcCCccccccccccccee
Confidence 58999999998 79999999999999999999999999999999999999999999986310
Q ss_pred -------cc-cccccCHHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCC--CceEEEEEec
Q 040734 119 -------EK-RITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDP--NVGFNVELKF 188 (361)
Q Consensus 119 -------~~-~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~--~~~l~iEiK~ 188 (361)
.+ .|.++|++||++|+.. .++|+...++. .....+++||||+|+|++++. ++.++||||.
T Consensus 70 ~~~~~~~~g~~v~d~T~aeL~~l~~~--~~~~~~~~~~~--------~~~~~~~~IptL~evl~~~~~~~~~~l~iEiK~ 139 (302)
T cd08571 70 VVEGQSTSGIFSFDLTWAEIQTLKPI--ISNPFSVLFRN--------PRNDNAGKILTLEDFLTLAKPKSLSGVWINVEN 139 (302)
T ss_pred cccCcccCCeeeeeCCHHHHhhCccc--ccCcccccCCC--------cccCCCCCcCCHHHHHHhhhccCCceEEEEccC
Confidence 13 3899999999999421 13333111000 001245699999999999985 3789999997
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHhcCC---CCEEEEcCCHHHHHHHHHHC--CCCCEEEEccCCCccccccccccHHHH
Q 040734 189 DDHIVYEQDYLIRVIQAILKIVFEFAEN---RPIIFSTFQPDAAVLIRKLQ--STYPVFFLTNGGTEIFYDVRRNSLEEA 263 (361)
Q Consensus 189 ~~~~~~~~~~~~~~v~~vl~~l~~~~~~---~rv~~~Sf~~~~l~~l~~~~--p~~~~~~l~~~~~~~~~d~~~~~l~~~ 263 (361)
+... +.. ....+++.++++++++++. ++++++||++..|+++++.. |.++++++...... +.....+.+.
T Consensus 140 ~~~~-~~~-~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~~~~~---~~~~~~l~~~ 214 (302)
T cd08571 140 AAFL-AEH-KGLLSVDAVLTSLSKAGYDQTAKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVDDTEP---DTLLSNLTEI 214 (302)
T ss_pred chhh-hhh-ccccHHHHHHHHHHHcCCCCCCCCEEEeCCCHHHHHHHHhccCCCceEEEeecCCCcC---CCChhHHHHH
Confidence 5321 000 0024678889999999874 79999999999999999999 99999988753210 1101112222
Q ss_pred HHHHHhcCCcEEEcCCccc---------cCChHHHHHHHHcCCEEEEeccCCCHH-------------HHHHHHHhc-Cc
Q 040734 264 VKVCLEGGLQGIVSEVKGV---------FRNPGAVTKIKESKLSLLTYGRLNNVA-------------EAVYMQHLM-GI 320 (361)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~---------~~~~~~v~~~~~~Gl~v~~w~Tvn~~~-------------~~~~~~~~~-GV 320 (361)
..+ +.++++++..+ ..++++|+.+|++|+.|++| |+|++. ++.+++..+ ||
T Consensus 215 ~~~-----a~~v~~~~~~~~~~~~~~~~~~~~~~V~~ah~~Gl~V~~w-Tvn~~~~~~~~~~~~~~~~~~~~~~~~~~gV 288 (302)
T cd08571 215 KKF-----ASGVLVPKSYIWPVDSDSFLTPQTSVVQDAHKAGLEVYVS-GFANEFVSLAYDYSADPTLEILSFVGNGNSV 288 (302)
T ss_pred HHh-----cCccccChhHeeecCCCCcccCccHHHHHHHHcCCEEEEE-EEecCcccccccccCCHHHHHHHHHHhcCCC
Confidence 122 34444443322 12359999999999999999 999864 466666445 99
Q ss_pred cEEEeCChHHHHHH
Q 040734 321 DGVIVDLVQEITEA 334 (361)
Q Consensus 321 dgI~TD~p~~~~~~ 334 (361)
||||||+|+.+.+|
T Consensus 289 DGiiTD~P~~~~~~ 302 (302)
T cd08571 289 DGVITDFPATAARA 302 (302)
T ss_pred CEEEecCchhhhcC
Confidence 99999999998764
No 28
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=100.00 E-value=2.8e-46 Score=343.71 Aligned_cols=225 Identities=22% Similarity=0.293 Sum_probs=187.3
Q ss_pred eEEEecCCCCCCCCcchhhhcc-cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccC
Q 040734 48 LVVGHRGHGMNVLQSSDKRMQA-IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELS 126 (361)
Q Consensus 48 ~iiaHRG~~~~~~~~~~~~~~~-~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t 126 (361)
+||||||+++ . +||||++||++|++.|+|+||+|||+|+||++||+||.+++|+|+|. +.|.++|
T Consensus 1 ~iiaHRG~~~-----------~~~pENTl~af~~A~~~g~d~iE~DV~~T~Dg~~vv~HD~~l~r~t~~~---~~v~~~t 66 (240)
T cd08566 1 LVVAHRGGWG-----------AGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTNGK---GKVSDLT 66 (240)
T ss_pred CeEecCCCCC-----------CCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCCccccCCC---CchhhCc
Confidence 4899999987 5 99999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHHH
Q 040734 127 LSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAI 206 (361)
Q Consensus 127 ~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~v 206 (361)
++||+++ ++|.|+. .+.+++||||+|+|+++++++.++||+|.. ..+.+
T Consensus 67 ~~el~~l----~~~~~~~---------------~~~~~~iptL~evl~~~~~~~~l~iEiK~~------------~~~~~ 115 (240)
T cd08566 67 LAEIRKL----RLKDGDG---------------EVTDEKVPTLEEALAWAKGKILLNLDLKDA------------DLDEV 115 (240)
T ss_pred HHHHHhC----CcCCCcC---------------CCCCCCCCCHHHHHHhhhcCcEEEEEECch------------HHHHH
Confidence 9999999 4565531 236789999999999998678999999964 24678
Q ss_pred HHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCCh
Q 040734 207 LKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNP 286 (361)
Q Consensus 207 l~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 286 (361)
+++++++++.++++|+||+++.++.+++..|+++++++...... . ...........++.++.+++... ..+
T Consensus 116 ~~~~~~~~~~~~v~~~sf~~~~l~~~~~~~p~~~~~~l~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~-~~~ 186 (240)
T cd08566 116 IALVKKHGALDQVIFKSYSEEQAKELRALAPEVMLMPIVRDAED----L----DEEEARAIDALNLLAFEITFDDL-DLP 186 (240)
T ss_pred HHHHHHcCCcccEEEEECCHHHHHHHHHhCCCCEEEEEEccCcc----h----hHHHHhcccccceEEEEEecccc-ccH
Confidence 88899999889999999999999999999999999998754221 0 00001122244566777665531 267
Q ss_pred HHHHHHHHc-CCEEEEeccCCC-------------HHHHHHHHHhcCccEEEeCCh
Q 040734 287 GAVTKIKES-KLSLLTYGRLNN-------------VAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 287 ~~v~~~~~~-Gl~v~~w~Tvn~-------------~~~~~~~~~~~GVdgI~TD~p 328 (361)
..+..++++ |++|++| |+|+ +.++.+++ .+|||||+||+|
T Consensus 187 ~~~~~~~~~~Gl~v~~w-Tvn~~~~~~~~~~~~~~~~~~~~l~-~~Gvd~I~TD~P 240 (240)
T cd08566 187 PLFDELLRALGIRVWVN-TLGDDDTAGLDRALSDPREVWGELV-DAGVDVIQTDRP 240 (240)
T ss_pred HHHHHHHHhCCCEEEEE-CCCcccccchhhhhhCchhHHHHHH-HcCCCEEecCCC
Confidence 788888887 9999999 9994 78888887 699999999998
No 29
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=2.5e-46 Score=354.04 Aligned_cols=257 Identities=17% Similarity=0.225 Sum_probs=185.7
Q ss_pred ceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCcc---------
Q 040734 47 FLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTI--------- 117 (361)
Q Consensus 47 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~--------- 117 (361)
|+||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+||+..
T Consensus 1 p~iiaHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~ 69 (300)
T cd08604 1 PLIISHNGASG-----------DYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATT 69 (300)
T ss_pred CeEEecCCcCC-----------CCCcchHHHHHHHHHcCCCEEEEeeeEcCCCCEEEeccccccCcccCCcccccccccc
Confidence 58999999988 7999999999999999999999999999999999999999999999851
Q ss_pred -------ccccccccCHHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCC-C-ceEEEEEec
Q 040734 118 -------FEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDP-N-VGFNVELKF 188 (361)
Q Consensus 118 -------~~~~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~-~-~~l~iEiK~ 188 (361)
....+.++|++||++++... .++|+.-...+. .....+++||||+|+|++++. + ..++||||.
T Consensus 70 ~~~~~~~~~~~v~d~t~~eL~~l~~~~-~~~~~~~~~~~~-------~~~~~~~~iptL~Evl~~~~~~~~~~l~iEiK~ 141 (300)
T cd08604 70 VPEIGSTSGIFTFDLTWSEIQTLKPAI-SNPYSVTGLFRN-------PANKNAGKFLTLSDFLDLAKNKSLSGVLINVEN 141 (300)
T ss_pred cccccccCceeeecCcHHHHhhCccCC-cCcccccCcCCC-------cccCCCCCCCCHHHHHHHHHhcCCceEEEEeec
Confidence 00147899999999994321 123432100000 001235799999999999973 3 589999997
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHhcCC----CCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHH
Q 040734 189 DDHIVYEQDYLIRVIQAILKIVFEFAEN----RPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAV 264 (361)
Q Consensus 189 ~~~~~~~~~~~~~~v~~vl~~l~~~~~~----~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~ 264 (361)
+... +.. ....+++.++++++++++. ++++++||++..|+++++.. +++.++++.... .+.....+.+
T Consensus 142 ~~~~-~~~-~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~-~~~~~~l~~~~~---~~~~~~~~~~-- 213 (300)
T cd08604 142 AAYL-AEK-KGLDVVDAVLDALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQI-SYERVYVVDETI---RDASDSSIEE-- 213 (300)
T ss_pred cchh-hhc-cCccHHHHHHHHHHHcCCCCCCCCeEEEEcCCHHHHHHHHhcc-CCceEEEecCcc---cccChhHHHH--
Confidence 5321 000 0014788999999999874 68999999999999999988 999999875321 1110001111
Q ss_pred HHHHhcCCcEEEcCCccc------cC--ChHHHHHHHHcCCEEEEeccCCCH-------------HHHHHHHHhcCccEE
Q 040734 265 KVCLEGGLQGIVSEVKGV------FR--NPGAVTKIKESKLSLLTYGRLNNV-------------AEAVYMQHLMGIDGV 323 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~------~~--~~~~v~~~~~~Gl~v~~w~Tvn~~-------------~~~~~~~~~~GVdgI 323 (361)
. ...+.+++++...+ .. ++++|+.+|++|+.|++| |||++ .++.+++..+|||||
T Consensus 214 -~--~~~a~~v~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~vw-Tvn~~~~~~~~~~~~~~~~~~~~~~~~~GVdgI 289 (300)
T cd08604 214 -I--KKFADAVVIDRGSVFPVSTSFLTRQTNVVEKLQSANLTVYVE-VLRNEFVSLAFDFFADPTVEINSYVQGAGVDGF 289 (300)
T ss_pred -H--HHhccEEEeChhhcccccCCcccCchHHHHHHHHCCCEEEEE-EecCCccccchhccCCHHHHHHHHHHHcCCCEE
Confidence 1 11234555554322 11 348999999999999999 99986 233443346999999
Q ss_pred EeCChHHHHHH
Q 040734 324 IVDLVQEITEA 334 (361)
Q Consensus 324 ~TD~p~~~~~~ 334 (361)
|||+|+.+.+|
T Consensus 290 iTD~P~~~~~~ 300 (300)
T cd08604 290 ITEFPATAARY 300 (300)
T ss_pred EecCchhhhcC
Confidence 99999998764
No 30
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=7.4e-46 Score=355.84 Aligned_cols=286 Identities=17% Similarity=0.176 Sum_probs=199.5
Q ss_pred chhhhhccCCCCCCCCcceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCC-C
Q 040734 30 FSSCLEMNKSASFRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDD-V 108 (361)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~-~ 108 (361)
+-+|.+.... +.++||||||+++ .+||||++||+.|+++|||+||+|||+||||++||+||. +
T Consensus 5 ~~~~~~~~~~-----~~~~iIAHRGasg-----------~~PEnTl~Af~~Ai~~Gad~IE~DV~lTkDg~lVV~HD~~~ 68 (356)
T cd08560 5 LLSCAEKPFR-----KTDFSIGHRGAPL-----------QFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQCD 68 (356)
T ss_pred HHHHhcCCCC-----CCceEEEcCCCCC-----------CCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCcc
Confidence 3467644322 4778999999998 799999999999999999999999999999999999996 8
Q ss_pred cccccCCcc----------------------ccccccccCHHHHhccCCccccccccccccccccCCcccccc---cccC
Q 040734 109 IVSEDNGTI----------------------FEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWN---VEID 163 (361)
Q Consensus 109 l~r~t~g~~----------------------~~~~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~---~~~~ 163 (361)
|+|+||+.. ..+.|.++||+||++|+...+.+.+++........+ .-.|+ ...+
T Consensus 69 L~rtTnv~~~pe~a~r~~~~~~~g~~~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~ 147 (356)
T cd08560 69 LHTTTNILAIPELAAKCTQPFTPANATKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNG-TPDWRTDLYATC 147 (356)
T ss_pred ccCccCCccccchhhhccccccccccccccccCcchhhCcHHHHhcCCCcccccccccccccccccc-ccccccccccCC
Confidence 999998741 013799999999999965322222211100000000 00011 1246
Q ss_pred CcccCHHHHHHhCCC-CceEEEEEecCCcc-chhh-hHHHHHHHHHHHHHHHhcCC-CCEEEEcCCHHHHHHHHHHCCCC
Q 040734 164 DSLCTLQEAFQQVDP-NVGFNVELKFDDHI-VYEQ-DYLIRVIQAILKIVFEFAEN-RPIIFSTFQPDAAVLIRKLQSTY 239 (361)
Q Consensus 164 ~~iptL~EvL~~~~~-~~~l~iEiK~~~~~-~~~~-~~~~~~v~~vl~~l~~~~~~-~rv~~~Sf~~~~l~~l~~~~p~~ 239 (361)
++||||+|+|++++. ++.++||||.+... ++.+ ...+.+++.++++++++++. ++|+++||++..|+++++..|++
T Consensus 148 ~~IPTL~Evl~lv~~~~v~l~iEiK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSFd~~~L~~~~~~~p~~ 227 (356)
T cd08560 148 GTLMTHKESIALFKSLGVKMTPELKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSFNLDDIFYWIKNEPDF 227 (356)
T ss_pred CCCCCHHHHHHHHHhcCceEEEEeCCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHHHhCCCC
Confidence 799999999999974 79999999976431 1000 11235889999999999876 79999999999999999999988
Q ss_pred CEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc--------cCChHHHHHHHHcCCEEEEeccCCC----
Q 040734 240 PVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV--------FRNPGAVTKIKESKLSLLTYGRLNN---- 307 (361)
Q Consensus 240 ~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~v~~~~~~Gl~v~~w~Tvn~---- 307 (361)
+..++.........+... .+...++.....++.++.+++..+ ..+.++|+.+|++|++|++| |+++
T Consensus 228 ~~~l~~l~~~~~~~~~~~-~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~~~~~~v~~Ah~~GL~V~~W-Tvr~~~~~ 305 (356)
T cd08560 228 GRQAVYLDDRDDTADFPA-TWSPSMDELKARGVNIIAPPIWMLVDPDENGKIVPSEYAKAAKAAGLDIITW-TLERSGPL 305 (356)
T ss_pred CeeEEEEccCCccccccc-cHHHHHHHHHhCCccEecCchhhccccccccccCCHHHHHHHHHcCCEEEEE-EeecCccc
Confidence 765444221100011111 122334444456777877775432 23679999999999999999 9952
Q ss_pred -----------------HHH----HHHHHHhcCccEEEeCChHHHHHH
Q 040734 308 -----------------VAE----AVYMQHLMGIDGVIVDLVQEITEA 334 (361)
Q Consensus 308 -----------------~~~----~~~~~~~~GVdgI~TD~p~~~~~~ 334 (361)
..+ +..++..+|||||+||+|+...-|
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvDGvftD~p~~~~~~ 353 (356)
T cd08560 306 ASGGGWYYQTIEDVINNDGDMYNVLDVLARDVGILGIFSDWPATVTYY 353 (356)
T ss_pred ccCcccccccccccccccccHHHHHHHHHHhcCCCEEEccCCCceeEe
Confidence 222 223333699999999999876543
No 31
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=1.8e-45 Score=354.33 Aligned_cols=272 Identities=17% Similarity=0.185 Sum_probs=195.5
Q ss_pred CCCcceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCcc-----
Q 040734 43 RIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTI----- 117 (361)
Q Consensus 43 ~~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~----- 117 (361)
...+|+||||||+++ .+||||++||++|++.|+|+||+|||+|+||++||+||.+++|+|++..
T Consensus 23 ~~~~pliiAHRGas~-----------~~PENTl~Af~~A~~~GaD~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~~~~~~ 91 (355)
T PRK11143 23 DSAEKIVIAHRGASG-----------YLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDRVTDVAERFPDR 91 (355)
T ss_pred cCCCcEEEECCCCCC-----------CCCcchHHHHHHHHHcCCCEEEEeeeEccCCcEEEeCCchhcccCCcccccccc
Confidence 456789999999988 7999999999999999999999999999999999999999999998320
Q ss_pred ----ccccccccCHHHHhccCCcccccccccccccccc---CCcccccccccCCcccCHHHHHHhCCC-------CceEE
Q 040734 118 ----FEKRITELSLSEFLSYGPQREQGKIGKSLLRKTK---DGKILHWNVEIDDSLCTLQEAFQQVDP-------NVGFN 183 (361)
Q Consensus 118 ----~~~~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~---~g~~~~~~~~~~~~iptL~EvL~~~~~-------~~~l~ 183 (361)
..+.|.++||+||++| ++|.||....++.. .++.. ....+++||||+|+|++++. ++.++
T Consensus 92 ~~~~g~~~v~dlT~aEL~~l----d~~~~f~~~~g~~~~~~~~~~~--~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l~ 165 (355)
T PRK11143 92 ARKDGRYYAIDFTLDEIKSL----KFTEGFDIENGKKVQVYPGRFP--MGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIY 165 (355)
T ss_pred cccCCceeEeeCcHHHHhhC----CCCCCccccccccccccccccc--ccCCCCccCCHHHHHHHHHHhhhhcCCCceee
Confidence 0267999999999999 56666532100000 00000 01247899999999998863 57899
Q ss_pred EEEecCCccchhhhHHHHHHHHHHHHHHHhcC---CCCEEEEcCCHHHHHHHHH-HCCC----CCEEEEccCC-Cc-cc-
Q 040734 184 VELKFDDHIVYEQDYLIRVIQAILKIVFEFAE---NRPIIFSTFQPDAAVLIRK-LQST----YPVFFLTNGG-TE-IF- 252 (361)
Q Consensus 184 iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~---~~rv~~~Sf~~~~l~~l~~-~~p~----~~~~~l~~~~-~~-~~- 252 (361)
||||.+..... ....++++++++++++++ .++++++||+++.|+.+++ ..|+ ++.+++.... .. ..
T Consensus 166 IEiK~~~~~~~---~~~~~~~~v~~~l~~~g~~~~~~~v~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 242 (355)
T PRK11143 166 PEIKAPWFHHQ---EGKDIAAKVLEVLKKYGYTGKDDKVYLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQE 242 (355)
T ss_pred EeccCcccccc---cchhHHHHHHHHHHHhCCCCCCCCEEEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCccccc
Confidence 99998532111 112578899999999997 3789999999999999998 6776 4877775321 00 00
Q ss_pred ----cccccccHH-----HHHHHHHhcCCcEEEcCCccccCC----------hHHHHHHHHcCCEEEEeccCCC------
Q 040734 253 ----YDVRRNSLE-----EAVKVCLEGGLQGIVSEVKGVFRN----------PGAVTKIKESKLSLLTYGRLNN------ 307 (361)
Q Consensus 253 ----~d~~~~~l~-----~~~~~~~~~~~~~i~~~~~~~~~~----------~~~v~~~~~~Gl~v~~w~Tvn~------ 307 (361)
..+...... ..+... ...+.++++++..+ .+ +++++.+|++|+.|++| |||+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~i~p~~~~l-~~~~~~~~~~~~~~~v~~ah~~Gl~V~~W-TVn~~~~~~~ 319 (355)
T PRK11143 243 KQPDGKWVNYNYDWMFKPGAMKEV-AKYADGIGPDYHML-VDETSTPGNIKLTGMVKEAHQAKLVVHPY-TVRADQLPEY 319 (355)
T ss_pred ccccCcccccchhhhcChhhHHHH-HhhceeecCChhhe-eeccccCCccChHHHHHHHHHcCCEEEEE-Eeccccchhh
Confidence 000000000 011111 12355676665432 23 48999999999999999 9986
Q ss_pred ---HHHHHHHH-HhcCccEEEeCChHHHHHHHHH
Q 040734 308 ---VAEAVYMQ-HLMGIDGVIVDLVQEITEAVYD 337 (361)
Q Consensus 308 ---~~~~~~~~-~~~GVdgI~TD~p~~~~~~l~~ 337 (361)
+.++.+++ ..+||||||||+|+.+.+++.+
T Consensus 320 ~~d~~~~~~~~~~~~GVDGIiTD~P~~~~~~l~~ 353 (355)
T PRK11143 320 ATDVNQLYDILYNQAGVDGVFTDFPDKAVKFLNK 353 (355)
T ss_pred hcChHHHHHHHHHccCCCEEEcCChHHHHHHHhc
Confidence 56776652 3699999999999999988854
No 32
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=100.00 E-value=2e-45 Score=337.08 Aligned_cols=223 Identities=22% Similarity=0.281 Sum_probs=179.8
Q ss_pred EEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHH
Q 040734 49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLS 128 (361)
Q Consensus 49 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~ 128 (361)
||||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|++. .+.|+++|++
T Consensus 1 iiAHRG~~~-----------~~pENT~~af~~a~~~g~d~vE~Dv~lTkDg~~vv~HD~~l~R~t~~~--~~~v~~~t~~ 67 (234)
T cd08570 1 VIGHRGYKA-----------KYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFGKD--GLIIDDSTWD 67 (234)
T ss_pred CEeCCCCCC-----------CCCccHHHHHHHHHHhCCCEEEEEeeEccCCcEEEeCCCccceeeCCC--CCEeccCCHH
Confidence 689999988 799999999999999999999999999999999999999999999874 2689999999
Q ss_pred HHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCC----CCceEEEEEecCCccchhhhHHHHHHH
Q 040734 129 EFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVD----PNVGFNVELKFDDHIVYEQDYLIRVIQ 204 (361)
Q Consensus 129 eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~----~~~~l~iEiK~~~~~~~~~~~~~~~v~ 204 (361)
||++++. +. ...+++|||+|+|++++ +++.++||+|..... ..+.+
T Consensus 68 eL~~l~~----~~-------------------~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~-------~~~~~ 117 (234)
T cd08570 68 ELSHLRT----IE-------------------EPHQPMPTLKDVLEWLVEHELPDVKLMLDIKRDNDP-------EILFK 117 (234)
T ss_pred HHhhccc----cc-------------------CCCccCCcHHHHHHHHHhcCCCCeEEEEEECCCCCH-------HHHHH
Confidence 9999842 21 13468999999999985 368999999975321 14556
Q ss_pred HHHHHHHHhc----CCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhc-CCcEEEcCC
Q 040734 205 AILKIVFEFA----ENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEG-GLQGIVSEV 279 (361)
Q Consensus 205 ~vl~~l~~~~----~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~-~~~~i~~~~ 279 (361)
.+.+++++++ +.+|++++||++..++++++..|+++.+++.... .....+.... ++.++.+.+
T Consensus 118 ~v~~~i~~~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~------------~~~~~~~~~~~~~~~~~~~~ 185 (234)
T cd08570 118 LIAEMLAVKPDLDFWRERIILGLWHLDFLKYGKEVLPGFPVFHIGFSL------------DYARHFLNYSEKLVGISMHF 185 (234)
T ss_pred HHHHHHHhcCCcccccCCEEEEeCCHHHHHHHHHhCCCCCeEEEEcCH------------HHHHHHhccccccceEEeee
Confidence 6777777765 3579999999999999999999999998875321 1111222111 244554443
Q ss_pred ccc--cCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 280 KGV--FRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 280 ~~~--~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
... ..++++++.+|++|+.|++| |||+++++.+++ ++|||||+||+|
T Consensus 186 ~~~~~~~~~~~v~~~~~~gl~v~~w-Tvn~~~~~~~l~-~~gvdgiiTD~P 234 (234)
T cd08570 186 VSLWGPFGQAFLPELKKNGKKVFVW-TVNTEEDMRYAI-RLGVDGVITDDP 234 (234)
T ss_pred ehhhcccCHHHHHHHHHCCCEEEEE-ecCCHHHHHHHH-HCCCCEEEeCCC
Confidence 321 14899999999999999999 999999999997 699999999998
No 33
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=100.00 E-value=2.2e-45 Score=348.72 Aligned_cols=251 Identities=18% Similarity=0.203 Sum_probs=187.5
Q ss_pred ceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccc--------
Q 040734 47 FLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIF-------- 118 (361)
Q Consensus 47 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~-------- 118 (361)
|+||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+||+...
T Consensus 1 p~iiAHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~ 69 (309)
T cd08602 1 PLVIAHRGASG-----------YRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKT 69 (309)
T ss_pred CeEEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEeCCCccccccCcccccccccccc
Confidence 58999999988 79999999999999999999999999999999999999999999987410
Q ss_pred ----------cccccccCHHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCC-------Cce
Q 040734 119 ----------EKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDP-------NVG 181 (361)
Q Consensus 119 ----------~~~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~-------~~~ 181 (361)
...|.++|++||+++ ++|.|+... +. .....++||||+|+|++++. ++.
T Consensus 70 ~~~i~~~~~~~~~v~d~t~~eL~~l----~~~~~~~~~------~~----~~~~~~~iptL~Evl~~~~~~~~~~~~~~~ 135 (309)
T cd08602 70 TKTVDGVNVTGWFTEDFTLAELKTL----RARQRLPYR------DQ----SYDGQFPIPTFEEIIALAKAASAATGRTVG 135 (309)
T ss_pred ccccCCcccCCeeeccCCHHHHhhC----ccCCcCccc------Cc----ccCCCcCcCCHHHHHHHHHhhhhcccccce
Confidence 123999999999999 466554220 00 00134689999999999963 578
Q ss_pred EEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCC---CCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCcccccc---
Q 040734 182 FNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAEN---RPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDV--- 255 (361)
Q Consensus 182 l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~---~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~--- 255 (361)
++||||.+..... .....++++++++++++++. ++++++|||++.|+++++.. +++++++.........+.
T Consensus 136 l~iEiK~~~~~~~--~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SFd~~~L~~~~~~~-~~~~~~L~~~~~~~~~~~~~~ 212 (309)
T cd08602 136 IYPEIKHPTYFNA--PLGLPMEDKLLETLKKYGYTGKKAPVFIQSFEVTNLKYLRNKT-DLPLVQLIDDATIPPQDTPEG 212 (309)
T ss_pred eEEeecCchhccc--ccCCCHHHHHHHHHHHcCCCCCCCCEEEECCCHHHHHHHHhhh-CCCeEEEecCCCCCccccccc
Confidence 9999996542110 00014778899999999875 59999999999999999998 999999875432100000
Q ss_pred ---ccc--cHHHHHHHHHhcCCcEEEcCCccc---------cCChHHHHHHHHcCCEEEEeccCCCH-------------
Q 040734 256 ---RRN--SLEEAVKVCLEGGLQGIVSEVKGV---------FRNPGAVTKIKESKLSLLTYGRLNNV------------- 308 (361)
Q Consensus 256 ---~~~--~l~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~v~~~~~~Gl~v~~w~Tvn~~------------- 308 (361)
... .....++.. ...+.++++++..+ ..++++++.+|++|+.|++| |||++
T Consensus 213 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~w-Tvn~~~~~~~~~~~~~~~ 290 (309)
T cd08602 213 DSRTYADLTTDAGLKEI-ATYADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPY-TFRNENTFLPPDFFGDPY 290 (309)
T ss_pred CccchhhhcCHHHHHHH-HhhceEEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEE-EecCCCcccCcccCCCHH
Confidence 000 011111111 12345677665532 22569999999999999999 99974
Q ss_pred HHHHHHHHhcCccEEEeCCh
Q 040734 309 AEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 309 ~~~~~~~~~~GVdgI~TD~p 328 (361)
+++.+++ ++||||||||+|
T Consensus 291 ~~~~~l~-~~GVdgiiTD~P 309 (309)
T cd08602 291 AEYRAFL-DAGVDGLFTDFP 309 (309)
T ss_pred HHHHHHH-HhCCCEEeCCCC
Confidence 6888887 699999999998
No 34
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=100.00 E-value=6.8e-45 Score=334.19 Aligned_cols=231 Identities=19% Similarity=0.241 Sum_probs=186.4
Q ss_pred EEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccc-cCCccccccccccCH
Q 040734 49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSE-DNGTIFEKRITELSL 127 (361)
Q Consensus 49 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~-t~g~~~~~~v~d~t~ 127 (361)
+|||||++.. +.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+ +.|....+.+.++|+
T Consensus 1 ~~aHRG~G~~---------~~~pENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~~~~~~i~~~t~ 71 (237)
T cd08583 1 LIAHAMGGID---------GKTYTNSLDAFEHNYKKGYRVFEVDLSLTSDGVLVARHSWDESLLKQLGLPTSKNTKPLSY 71 (237)
T ss_pred CeeecCCCCC---------CCCCccHHHHHHHHHHhCCCEEEEEeeEccCCCEEEEECCcCchhhhcCCcccccccCCCH
Confidence 4899998543 278999999999999999999999999999999999999999875 333101278999999
Q ss_pred HHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCC--CCceEEEEEecCCccchhhhHHHHHHHH
Q 040734 128 SEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVD--PNVGFNVELKFDDHIVYEQDYLIRVIQA 205 (361)
Q Consensus 128 ~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~--~~~~l~iEiK~~~~~~~~~~~~~~~v~~ 205 (361)
+||++++. ..++++|||+|+|++++ +++.++||+|...... ...++..
T Consensus 72 ~el~~~~~-------------------------~~~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~-----~~~~~~~ 121 (237)
T cd08583 72 EEFKSKKI-------------------------YGKYTPMDFKDVIDLLKKYPDVYIVTDTKQDDDND-----IKKLYEY 121 (237)
T ss_pred HHHhhccc-------------------------cCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCccc-----HHHHHHH
Confidence 99998731 24578999999999997 3688999999754311 1246778
Q ss_pred HHHHHHHh--cCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc
Q 040734 206 ILKIVFEF--AENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF 283 (361)
Q Consensus 206 vl~~l~~~--~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 283 (361)
+++.++++ ++.+|++|+||++..|+.+++..|....+++..... ...+.....++...++.++++++..
T Consensus 122 l~~~~~~~~~~~~~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-- 192 (237)
T cd08583 122 IVKEAKEVDPDLLDRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQD-------SIRLDEIIAFCYENGIKAVTISKNY-- 192 (237)
T ss_pred HHHHHHhhcccccceeEEEecCHHHHHHHHHhCCCcceeeEecccc-------ccchHHHHHHHHHcCCcEEEechhh--
Confidence 88888885 477899999999999999999999866655442210 0122344456677888888888765
Q ss_pred CChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChH
Q 040734 284 RNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQ 329 (361)
Q Consensus 284 ~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~ 329 (361)
.++++++.+|++|+.|++| |||++.+++++. .+|||||+||++.
T Consensus 193 ~~~~~v~~~~~~Gl~v~vw-TVn~~~~~~~l~-~~GVdgiiTD~~~ 236 (237)
T cd08583 193 VNDKLIEKLNKAGIYVYVY-TINDLKDAQEYK-KLGVYGIYTDFLT 236 (237)
T ss_pred cCHHHHHHHHHCCCEEEEE-eCCCHHHHHHHH-HcCCCEEEeCCCC
Confidence 4899999999999999999 999999999997 6999999999985
No 35
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=4.4e-44 Score=328.26 Aligned_cols=229 Identities=22% Similarity=0.242 Sum_probs=183.2
Q ss_pred cceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCcccccccccc
Q 040734 46 KFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITEL 125 (361)
Q Consensus 46 ~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~ 125 (361)
++.+|||||+++.. +.+||||++||++|++.|+ +||+|||+|+||++||+||.+++|+|++. +.|.++
T Consensus 3 ~~~~iaHRG~~~~~--------~~~pENTl~af~~A~~~G~-~iE~DV~lT~Dg~lVv~HD~~l~r~t~~~---~~v~~~ 70 (237)
T cd08585 3 KDRPIAHRGLHDRD--------AGIPENSLSAFRAAAEAGY-GIELDVQLTADGEVVVFHDDNLKRLTGVE---GRVEEL 70 (237)
T ss_pred cCCceECCCCCCCC--------CCCCccHHHHHHHHHHcCC-cEEEEeeECCCCCEEEeccchHhhhcCCC---CccccC
Confidence 34589999997610 1479999999999999999 89999999999999999999999999997 999999
Q ss_pred CHHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHH
Q 040734 126 SLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQA 205 (361)
Q Consensus 126 t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~ 205 (361)
|++||++++ +|. .+++||||+|+|+++++++.++||+|.+... + ..+++.
T Consensus 71 t~~eL~~l~----~~~--------------------~~~~iPtL~evl~~~~~~~~l~iEiK~~~~~-~-----~~l~~~ 120 (237)
T cd08585 71 TAAELRALR----LLG--------------------TDEHIPTLDEVLELVAGRVPLLIELKSCGGG-D-----GGLERR 120 (237)
T ss_pred CHHHHhcCC----CCC--------------------CCCCCCCHHHHHHHhccCceEEEEEccCCcc-c-----hHHHHH
Confidence 999999994 321 4578999999999998778999999976431 1 257788
Q ss_pred HHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHH----HHHHHHHhcCCcEEEcCCcc
Q 040734 206 ILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLE----EAVKVCLEGGLQGIVSEVKG 281 (361)
Q Consensus 206 vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~----~~~~~~~~~~~~~i~~~~~~ 281 (361)
+++++++++ .+++++||++..++++++..|+++++++...... +.....+. .........++..+.+++..
T Consensus 121 v~~~l~~~~--~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (237)
T cd08585 121 VLAALKDYK--GPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSND---EADPAFWNEALLSALFSNLLTRPDFIAYHLDD 195 (237)
T ss_pred HHHHHHhcC--CCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcc---cccccchhHHHHHhhhhhhccCCCEEEeChhh
Confidence 888888764 5899999999999999999999999999753211 00000010 00111122466677776654
Q ss_pred ccCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 282 VFRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 282 ~~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
+++++++.+|++ |+.|++| |||++++++++. ++|+++||-
T Consensus 196 --~~~~~v~~~~~~~G~~v~vW-TVnd~~~~~~l~-~~G~~~i~~ 236 (237)
T cd08585 196 --LPNPFVTLARALLGMPVIVW-TVRTEEDIARLK-QYADNIIFE 236 (237)
T ss_pred --CcCHHHHHHHHhcCCcEEEE-eCCCHHHHHHHH-HhCCeeEeC
Confidence 489999999999 9999999 999999999997 699999874
No 36
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=100.00 E-value=8.4e-44 Score=332.52 Aligned_cols=252 Identities=16% Similarity=0.187 Sum_probs=191.4
Q ss_pred CCCcceEEEecCCCCCCCCc-----------chhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCccc
Q 040734 43 RIPKFLVVGHRGHGMNVLQS-----------SDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVS 111 (361)
Q Consensus 43 ~~~~~~iiaHRG~~~~~~~~-----------~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r 111 (361)
....|+||||||.++.+..+ .+++.+.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|
T Consensus 20 ~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVV~HD~tL~R 99 (309)
T cd08613 20 PGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGADVVELDVHPTKDGEFAVFHDWTLDC 99 (309)
T ss_pred CCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEecCcccc
Confidence 34578999999997743111 2344568899999999999999999999999999999999999999999
Q ss_pred ccCCccccccccccCHHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCc
Q 040734 112 EDNGTIFEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDH 191 (361)
Q Consensus 112 ~t~g~~~~~~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~ 191 (361)
+|+|. +.|+++|++||+++ ++|+|+.. +.|+.++.+.....+||||+|+|++++ +..++||||.+..
T Consensus 100 ~T~g~---g~V~dlTlaEL~~L----d~g~~~~~-----~~g~~~p~~~~~~~~IPTL~EvL~~~~-~~~l~IEiK~~~~ 166 (309)
T cd08613 100 RTDGS---GVTRDHTMAELKTL----DIGYGYTA-----DGGKTFPFRGKGVGMMPTLDEVFAAFP-DRRFLINFKSDDA 166 (309)
T ss_pred ccCCC---CchhhCCHHHHhhC----CcCccccc-----ccccccccccCCCCCCcCHHHHHHhcC-CCcEEEEeCCCCc
Confidence 99998 99999999999999 67777543 123333333233467999999999998 4789999998643
Q ss_pred cchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC--HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHh
Q 040734 192 IVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQ--PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLE 269 (361)
Q Consensus 192 ~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~--~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~ 269 (361)
...+.+.+++++++.. ++.+.||+ ...++++++..|+++..-... .....-.+..
T Consensus 167 ---------~~~~~v~~~i~~~~~~-r~~v~sf~s~~~~l~~~r~l~P~~~~~s~~~-------------~~~~~~~~~~ 223 (309)
T cd08613 167 ---------AEGELLAEKLATLPRK-RLQVLTVYGGDKPIAALRELTPDLRTLSKAS-------------MKDCLIEYLA 223 (309)
T ss_pred ---------cHHHHHHHHHHhcCcc-ceEEEEEECCHHHHHHHHHHCCCCceecccc-------------hHHHHHHHHh
Confidence 2356788888888875 77777776 888999999999987752111 1111111111
Q ss_pred cCCcE----------EEcC--Cccc--cCChHHHHHHHHcCCEEEEec---------cCCCHHHHHHHHHhcCccEEEeC
Q 040734 270 GGLQG----------IVSE--VKGV--FRNPGAVTKIKESKLSLLTYG---------RLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 270 ~~~~~----------i~~~--~~~~--~~~~~~v~~~~~~Gl~v~~w~---------Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
.+..+ +.++ +..+ -+++.|++++|++|.+|++|+ |+|++++|+++. +.|+|||+||
T Consensus 224 ~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~~~~~~~l~-~~~~~gi~T~ 302 (309)
T cd08613 224 LGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGEFSEGFDTPEDLKRLP-EGFTGYIWTN 302 (309)
T ss_pred hcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCcccCCCCCHHHHHHHH-hhCCCeEEeC
Confidence 22222 2222 2111 248999999999999999995 699999999997 6999999999
Q ss_pred ChHHH
Q 040734 327 LVQEI 331 (361)
Q Consensus 327 ~p~~~ 331 (361)
+++.+
T Consensus 303 r~~~l 307 (309)
T cd08613 303 KIEAL 307 (309)
T ss_pred CHhhc
Confidence 99875
No 37
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=100.00 E-value=3.6e-41 Score=310.24 Aligned_cols=244 Identities=27% Similarity=0.444 Sum_probs=167.8
Q ss_pred ecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHHHHh
Q 040734 52 HRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFL 131 (361)
Q Consensus 52 HRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~eL~ 131 (361)
|||+++ .+||||++||+.|++.|+++||+|||+||||++||+||.++.|++++. +.|.++||+||+
T Consensus 1 HRG~~~-----------~~pENTl~af~~A~~~G~~~iE~Dv~lTkDg~~Vv~HD~~l~r~~~~~---~~i~~~t~~el~ 66 (256)
T PF03009_consen 1 HRGASG-----------NAPENTLAAFRAAIELGADGIELDVQLTKDGVPVVFHDDTLDRTTGGD---GPISDLTYAELK 66 (256)
T ss_dssp TTTTTT-----------TSSTTSHHHHHHHHHTTSSEEEEEEEE-TTS-EEE-SSSBSTTTSSTE---SBGGGS-HHHHT
T ss_pred CCCCCC-----------CChhhHHHHHHHHHHhCCCeEcccccccCCceeEeccCCeeeeecCCC---ceeccCCHHHHh
Confidence 999998 699999999999999999999999999999999999999999999987 899999999999
Q ss_pred ccCCccccccccccccccccCCcccccccccCCcccCHHHHHHh-CCCCceEEEEEecCCccchhhhHHHHHHHHHHHHH
Q 040734 132 SYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQ-VDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIV 210 (361)
Q Consensus 132 ~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~-~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l 210 (361)
++. ..+.+....+. .+ ......+||||+|+|++ ...+..+++++|......... . ..++..++..+
T Consensus 67 ~l~---~~~~~~~~~~~---~~-----~~~~~~~i~tl~e~l~~~~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~~~~~~ 133 (256)
T PF03009_consen 67 KLR---TLGSKNSPPFR---GQ-----RIPGKQKIPTLEEVLELCAKVKLNLEIKIKSKDEIKDPE-F-LKIVKDIVESV 133 (256)
T ss_dssp TSB---ESSTTTTCGGT---TT-----TSCTCB--EBHHHHHHHHHTTTSEEEEEEEECTTSHHHH-H-HHHHHHHHHHH
T ss_pred hCc---ccccCCccccc---cc-----ceecccccCcHHHHHHhhhhccceeEEEEeecccccchh-h-ccccccccccc
Confidence 994 02222211110 00 01133679999999999 446788999998764321110 0 02333444444
Q ss_pred HHhc------CCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc---
Q 040734 211 FEFA------ENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG--- 281 (361)
Q Consensus 211 ~~~~------~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~--- 281 (361)
.... ...+++++||++..++.+++..|.+++++++........+ ........+ .+...+......
T Consensus 134 ~~~~~~~~~~~~~~i~~~sf~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~ 207 (256)
T PF03009_consen 134 SDILKNSKQALSRRIIISSFDPEALKQLKQRAPRYPVGFLFEQDDEAPAD---ISLFELYKF---VKCPGFLASVWNYAD 207 (256)
T ss_dssp HHCHHHHHHHHCTSEEEEESCHHHHHHHHHHCTTSEEEEEESSCHHHHHH----CCHHHHHH---HTTTEEEEEHGGGGH
T ss_pred cccccccccccccccccccCcHHHHHHHHhcCCCceEEEEeccCcccccc---chhhHHHHh---hcccccccccccccc
Confidence 3333 5689999999999999999999999999998654311110 001112223 333333222221
Q ss_pred ccCChHHHHHHHHcCCEEEEeccCCCH--HHHHHHHHhcCccEEEeCChHH
Q 040734 282 VFRNPGAVTKIKESKLSLLTYGRLNNV--AEAVYMQHLMGIDGVIVDLVQE 330 (361)
Q Consensus 282 ~~~~~~~v~~~~~~Gl~v~~w~Tvn~~--~~~~~~~~~~GVdgI~TD~p~~ 330 (361)
.+.++++++.+|++|+.|++| |+|++ +++.+++ .+|||||+||+|+.
T Consensus 208 ~~~~~~~v~~~~~~g~~v~~w-tvn~~~~~~~~~l~-~~gvdgIiTD~P~~ 256 (256)
T PF03009_consen 208 RLGNPRLVQEAHKAGLKVYVW-TVNDPDVEDMKRLL-DLGVDGIITDFPDT 256 (256)
T ss_dssp HCEBHHHHHHHHHTT-EEEEB-SB-SHSHHHHHHHH-HHT-SEEEES-HHH
T ss_pred ccccHHHHHHHHHCCCEEEEE-ecCCcHHHHHHHHH-hCCCCEEEEcCCCC
Confidence 112567999999999999999 99999 9999987 69999999999974
No 38
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=100.00 E-value=6.7e-40 Score=304.49 Aligned_cols=247 Identities=23% Similarity=0.360 Sum_probs=189.6
Q ss_pred cceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCcccccccccc
Q 040734 46 KFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITEL 125 (361)
Q Consensus 46 ~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~ 125 (361)
.++||||||+++ .+||||++||++|+++|+|+||+|||+||||++||+||.+++||+++. +.+.++
T Consensus 5 ~~~iiaHRG~s~-----------~~PENTl~Af~~A~~~gad~iE~Dv~lTkDg~lVv~HD~~~drt~~~~---~~~~~~ 70 (257)
T COG0584 5 MPLIIAHRGASG-----------YAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTNGL---GTVRDL 70 (257)
T ss_pred ceEEEeccCcCC-----------CCCcchHHHHHHHHHcCCCEEEeeccCccCCcEEEecccchhhhccCc---cccccC
Confidence 679999999998 699999999999999999999999999999999999999999999998 889999
Q ss_pred CHHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHH
Q 040734 126 SLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQA 205 (361)
Q Consensus 126 t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~ 205 (361)
|++|++++. .|.|..+ .. ++.+|||+|++..+..++.+++|+|.+...... ...+..
T Consensus 71 ~~~~~~~~~----~~~~~~~--------------~~-~~~ip~l~~~l~~~~~~~~l~ieiK~~~~~~~~----~~~~~~ 127 (257)
T COG0584 71 TLAELKRLD----AGSFRIP--------------TF-GEEIPTLEELLEATGRKIGLYIEIKSPGFHPQE----GKILAA 127 (257)
T ss_pred ChhhhcCcc----cCcccCC--------------CC-CCccCCHHHHHHHhcccCCeEEEecCCCcccch----hhhHHH
Confidence 999999983 4443221 23 789999999999995589999999997642111 113455
Q ss_pred HHHHHHHhc---CCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCcccccc-ccccHHHHHHHHHhcCCcEEEcCCcc
Q 040734 206 ILKIVFEFA---ENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDV-RRNSLEEAVKVCLEGGLQGIVSEVKG 281 (361)
Q Consensus 206 vl~~l~~~~---~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~-~~~~l~~~~~~~~~~~~~~i~~~~~~ 281 (361)
++..+.+.. ...+++++||+...++.++...|.+|++++...... +... ....+..... ...++.+.+..
T Consensus 128 ~~~~~~~~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~-~~~~~~~~~l~~~~~-----~~~~~~~~~~~ 201 (257)
T COG0584 128 LLALLKRYGGTAADDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQ-YDWMELPRALKEVAL-----YADGVGPDWAM 201 (257)
T ss_pred HHHHHHHhcccCCCCceEEEecCHHHHHHHHHhCcCCceEEEEcccch-hhhhhccchhhHHHh-----hhcccCcccce
Confidence 555555543 467999999999999999999999999999876310 0000 0011111111 22233333332
Q ss_pred ccC-ChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHHHHHHH
Q 040734 282 VFR-NPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYD 337 (361)
Q Consensus 282 ~~~-~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~~ 337 (361)
... .+.++..+|..|+.|++| |+|+++.+..+. .+|||||+||+|+.+.+.+..
T Consensus 202 ~~~~~~~~v~~~~~~gl~v~~~-tv~~~~~~~~~~-~~gvd~i~td~p~~~~~~~~~ 256 (257)
T COG0584 202 LAELLTELVDDAHAAGLKVHVW-TVNEEDDIRLLL-EAGVDGLITDFPDLAVAFLNK 256 (257)
T ss_pred ecccccHHHHHHHhCCCeEEEE-ecCcHHHHHHHH-HcCCCEEEcCCHHHHHHhhcc
Confidence 211 267899999999999999 999998866665 799999999999999887653
No 39
>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=1.7e-39 Score=302.98 Aligned_cols=250 Identities=15% Similarity=0.106 Sum_probs=175.9
Q ss_pred ceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCC--CEEEEeeeeecCCcEEEEcCCCcccccCCcc-------
Q 040734 47 FLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPL--DFIEFDVQVTKDGWPVIFHDDVIVSEDNGTI------- 117 (361)
Q Consensus 47 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Ga--d~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~------- 117 (361)
|+||||||+++ .+||||++||+.|++.|+ ++||||||+||||++||+||.+|+|+||+..
T Consensus 1 plVIAHRGasg-----------~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~~F~~r~~ 69 (299)
T cd08603 1 PLVIARGGFSG-----------LFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIARVYPKRKK 69 (299)
T ss_pred CeEEecCCCCC-----------CCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCccccccccc
Confidence 68999999998 799999999999999998 4899999999999999999999999998631
Q ss_pred --------ccc-cccccCHHHHhccCCccccccccccccccccCCcccccccccC-CcccCHHHHHHhCCC-CceEEEEE
Q 040734 118 --------FEK-RITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEID-DSLCTLQEAFQQVDP-NVGFNVEL 186 (361)
Q Consensus 118 --------~~~-~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~-~~iptL~EvL~~~~~-~~~l~iEi 186 (361)
..+ .+.++||+||++|+... ..++ + + ..+.+ .+||||+|+|++++. ++.++||+
T Consensus 70 t~~idG~~~~g~~~~d~TlaELk~L~~~~--~~~~-----r---~-----~~~~g~~~IpTLeEvl~~~~~~gi~i~ie~ 134 (299)
T cd08603 70 TYSVNGVSTKGWFSVDFTLAELQQVTLIQ--GIFS-----R---T-----PIFDGQYPISTVEDVVTLAKPEGLWLNVQH 134 (299)
T ss_pred cccccccccCCceeccCCHHHHhhCCCCC--Cccc-----C---C-----cccCCcCCCCCHHHHHHHhHhcCeEEEEec
Confidence 113 48999999999995321 1110 0 0 01233 489999999999974 56677777
Q ss_pred ecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHC--CCCCEEE-EccCCC-c-----ccccccc
Q 040734 187 KFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQ--STYPVFF-LTNGGT-E-----IFYDVRR 257 (361)
Q Consensus 187 K~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~--p~~~~~~-l~~~~~-~-----~~~d~~~ 257 (361)
|..-. ..+ ..+.+.|++.+++++. +++|||+...|+++++.. ++.++.+ +..... . .+.++..
T Consensus 135 ~~~~~--~~g---l~~~~~l~~~L~~~~~---v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~~ 206 (299)
T cd08603 135 DAFYQ--QHN---LSMSSYLLSLSKTVKV---DYISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILK 206 (299)
T ss_pred HHHHH--HcC---CCHHHHHHHHHHHcCc---EEEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHHH
Confidence 64211 011 2467888999988754 899999999999999863 4566654 332211 0 1111212
Q ss_pred ccHHHHHHHHHhcCCc--EEEcCC-c-cccCChHHHHHHHHcCCEEEEeccCCCH------------HHHHHHHHhcC--
Q 040734 258 NSLEEAVKVCLEGGLQ--GIVSEV-K-GVFRNPGAVTKIKESKLSLLTYGRLNNV------------AEAVYMQHLMG-- 319 (361)
Q Consensus 258 ~~l~~~~~~~~~~~~~--~i~~~~-~-~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~------------~~~~~~~~~~G-- 319 (361)
.+.++.+||...+.. .|.+.. . .+.....+|+.+|++|+.|++| |+.++ .++..++ ..|
T Consensus 207 -~L~eIa~yAdgig~~k~~i~p~~~~~~~~~~t~lV~~Ah~agL~Vh~~-tfr~e~~~~~~~~~d~~~e~~~~~-~~g~~ 283 (299)
T cd08603 207 -NLTFIKTFASGILVPKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYAS-GFANDFDISYNYSYDPVAEYLSFV-GNGNF 283 (299)
T ss_pred -hHHHHHHHHhhcCCChhheeecCCCCcccCccHHHHHHHHcCCeEEEE-EeeCCCCccccccCCHHHHHHHHH-hcCCC
Confidence 366777777665542 122111 1 1122458999999999999999 87654 3344444 466
Q ss_pred -ccEEEeCChHHHHH
Q 040734 320 -IDGVIVDLVQEITE 333 (361)
Q Consensus 320 -VdgI~TD~p~~~~~ 333 (361)
||||+||+|+.+.+
T Consensus 284 ~vDGvfTDfP~~a~~ 298 (299)
T cd08603 284 SVDGVLSDFPITASE 298 (299)
T ss_pred CCCEEEecCchhhcc
Confidence 99999999998754
No 40
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=100.00 E-value=8.1e-39 Score=282.87 Aligned_cols=189 Identities=25% Similarity=0.383 Sum_probs=165.5
Q ss_pred EEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHH
Q 040734 49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLS 128 (361)
Q Consensus 49 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~ 128 (361)
||||||+++ .+||||++||++|++.|+++||+|||+||||++||+||
T Consensus 1 i~aHRG~~~-----------~~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hd---------------------- 47 (189)
T cd08556 1 IIAHRGASG-----------EAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD---------------------- 47 (189)
T ss_pred CEeCCCCCC-----------CCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcC----------------------
Confidence 689999988 69999999999999999999999999999999999999
Q ss_pred HHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHHHHH
Q 040734 129 EFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILK 208 (361)
Q Consensus 129 eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~ 208 (361)
+|||+|+|+++++++.++||+|.+... ..+++.+++
T Consensus 48 -------------------------------------i~tL~e~l~~~~~~~~i~leiK~~~~~-------~~~~~~l~~ 83 (189)
T cd08556 48 -------------------------------------IPTLEEVLELVKGGVGLNIELKEPTRY-------PGLEAKVAE 83 (189)
T ss_pred -------------------------------------CCCHHHHHHhcccCcEEEEEECCCCCc-------hhHHHHHHH
Confidence 379999999999889999999997531 257889999
Q ss_pred HHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHH
Q 040734 209 IVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGA 288 (361)
Q Consensus 209 ~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 288 (361)
++++++..++++++||++..++++++..|++++++++....... .....+...++.++.+++.. .++.+
T Consensus 84 ~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~--~~~~~ 152 (189)
T cd08556 84 LLREYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDP---------LLAELARALGADAVNPHYKL--LTPEL 152 (189)
T ss_pred HHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccc---------hhhhHHHhcCCeEEccChhh--CCHHH
Confidence 99999989999999999999999999999999999986533110 00024557788888887664 48999
Q ss_pred HHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 289 VTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 289 v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
++.+|++|+.|++| |+|+.+++++++ .+|||||+||+
T Consensus 153 i~~~~~~g~~v~~w-tvn~~~~~~~~~-~~GVdgI~TD~ 189 (189)
T cd08556 153 VRAAHAAGLKVYVW-TVNDPEDARRLL-ALGVDGIITDD 189 (189)
T ss_pred HHHHHHcCCEEEEE-cCCCHHHHHHHH-HCCCCEEecCC
Confidence 99999999999999 999999999997 69999999996
No 41
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=100.00 E-value=1.9e-38 Score=297.80 Aligned_cols=242 Identities=21% Similarity=0.311 Sum_probs=201.0
Q ss_pred hHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHHHHhccCCccccccccccccccccCC
Q 040734 74 SIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDG 153 (361)
Q Consensus 74 Tl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g 153 (361)
+..+|..|.++|||+||+|||+||||+|||+||+++.|+ ++. ++|.++||+||+++ +.+.|+.. ....+
T Consensus 17 ~~~sfvtAsslgad~VE~DVqLTkDgvpVV~HD~~i~~t-~~~---~~V~dlTleqL~~l----~~~~~~~~---~~~~~ 85 (300)
T cd08578 17 DGNSFVTASSLSGEYLRVKVCVLKDGTPVVAPEWFVPVG-GIK---LLVSDLTAEQLESI----LDYSLDDL---NSEIS 85 (300)
T ss_pred CchhHHHHHHcCCCEEEEEEEECcCCEEEEECCCceEec-CCc---EEeecCcHHHHhcc----CCcccccc---ccccc
Confidence 467999999999999999999999999999999999774 665 99999999999999 45555432 11223
Q ss_pred cccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccc--------hhhhHHHHHHHHHHHHHHHhc--------CCC
Q 040734 154 KILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIV--------YEQDYLIRVIQAILKIVFEFA--------ENR 217 (361)
Q Consensus 154 ~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~--------~~~~~~~~~v~~vl~~l~~~~--------~~~ 217 (361)
.+..|+...+.++|||+|+|+.+++++.+|||||+|...+ .+..+.+.+++.+++.+.+|+ ..+
T Consensus 86 ~~~~~~~~~~~~~pTL~evL~~lp~~iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf~har~~~~~~~~~R 165 (300)
T cd08578 86 DMVDLKRLLSSRVVSLETLLELLPPSIQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVFDHARYLRHTPGSTR 165 (300)
T ss_pred ccchhhhhcCCcCCCHHHHHHhhccCCeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHHHHhhhhcccCCCCC
Confidence 3334556678899999999999998899999999987642 123468899999999999986 358
Q ss_pred CEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCc-----------------------cccccccccHHHHHHHHHhcCCcE
Q 040734 218 PIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTE-----------------------IFYDVRRNSLEEAVKVCLEGGLQG 274 (361)
Q Consensus 218 rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~-----------------------~~~d~~~~~l~~~~~~~~~~~~~~ 274 (361)
+++|+|||+++|..|++++|++|+.|+++.+.. .+.|.|..++++++++|...++.|
T Consensus 166 ~IiFSSf~pdiC~~L~~KQp~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~Si~~Av~fA~~~nL~G 245 (300)
T cd08578 166 SIVFSSCNPEVCTILNWKQPNFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRSIKEAVRFAKNNNLLG 245 (300)
T ss_pred ceEEeeCCHHHHHHHHhcCCCCCEEEEecCCccccccccccccccccccccccccccccCchhhhHHHHHHHHHHcCCcE
Confidence 999999999999999999999999999887642 367788899999999999999999
Q ss_pred EEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 275 IVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 275 i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
++++...+...|.+|+.+|++|+.+++|| -+.+. ........||||++.+..
T Consensus 246 iv~~~~~L~~~P~lV~~ik~~GL~lv~~g-~~~~~-~~~~~~~~~vnG~~~~~~ 297 (300)
T cd08578 246 LILPYSLLNIVPQLVESIKSRGLLLIASG-EPESL-IEVAEAGDGINGVVTEDE 297 (300)
T ss_pred EEecHHHHhhChHHHHHHHHcCCEEEEEC-CCCcc-ccccccccCCceEEeCCE
Confidence 99999988899999999999999999995 33211 222223589999998864
No 42
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=100.00 E-value=9e-35 Score=255.87 Aligned_cols=168 Identities=22% Similarity=0.328 Sum_probs=138.0
Q ss_pred EEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHH
Q 040734 49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLS 128 (361)
Q Consensus 49 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~ 128 (361)
||||||++. .+||||++||+.|++.|+++||+|||+|+||++||+||.+++|+|.
T Consensus 1 iiaHRG~~~-----------~~peNT~~af~~a~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~-------------- 55 (179)
T cd08555 1 VLSHRGYSQ-----------NGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTA-------------- 55 (179)
T ss_pred CEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEeEcCCCeEEEECCCccccccC--------------
Confidence 589999988 7999999999999999999999999999999999999999998762
Q ss_pred HHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCC-------CceEEEEEecCCccchhhhHHHH
Q 040734 129 EFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDP-------NVGFNVELKFDDHIVYEQDYLIR 201 (361)
Q Consensus 129 eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~-------~~~l~iEiK~~~~~~~~~~~~~~ 201 (361)
++++|||+|+|++++. .+.++||+|.+.. .+ ..
T Consensus 56 ----------------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~-~~-----~~ 95 (179)
T cd08555 56 ----------------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSP-EY-----DE 95 (179)
T ss_pred ----------------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCC-cc-----hH
Confidence 1469999999999974 6899999998653 11 25
Q ss_pred HHHHHHHHHHHhc---CCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcC
Q 040734 202 VIQAILKIVFEFA---ENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSE 278 (361)
Q Consensus 202 ~v~~vl~~l~~~~---~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~ 278 (361)
+..++++.+++++ +.++++++||. .+ +. + . ..+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~v~i~sf~-----------------~~---~~----~-----~---------~~~~~---- 133 (179)
T cd08555 96 FLAKVLKELRVYFDYDLRGKVVLSSFN-----------------AL---GV----D-----Y---------YNFSS---- 133 (179)
T ss_pred HHHHHHHHHHHcCCcccCCCEEEEeec-----------------cc---CC----C-----h---------hcccc----
Confidence 6778889999987 77899999990 00 00 0 0 00000
Q ss_pred CccccCChHHHHHHHHcCCEEEEeccCCC-HHHHHHHHHhcCccEEEeCC
Q 040734 279 VKGVFRNPGAVTKIKESKLSLLTYGRLNN-VAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 279 ~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~-~~~~~~~~~~~GVdgI~TD~ 327 (361)
.. ..++++|+.+|++|++|++| |+|+ ++++.+++ .+|||||+||+
T Consensus 134 ~~--~~~~~~v~~~~~~g~~v~~w-tvn~~~~~~~~l~-~~Gvd~i~TD~ 179 (179)
T cd08555 134 KL--IKDTELIASANKLGLLSRIW-TVNDNNEIINKFL-NLGVDGLITDF 179 (179)
T ss_pred hh--hcCHHHHHHHHHCCCEEEEE-eeCChHHHHHHHH-HcCCCEEeCCC
Confidence 11 34899999999999999999 9999 99999997 69999999996
No 43
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.90 E-value=9.4e-23 Score=178.00 Aligned_cols=177 Identities=13% Similarity=0.113 Sum_probs=125.7
Q ss_pred chHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHHHHhccCCccccccccccccccccC
Q 040734 73 NSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKD 152 (361)
Q Consensus 73 NTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~ 152 (361)
||++||++|++. |+||+|||+| ||++||+||.+++
T Consensus 7 NTl~AF~~A~~~--dgvE~DVr~t-Dg~lVV~HD~~l~------------------------------------------ 41 (192)
T cd08584 7 NTITALKRTFEN--FGVETDIRDY-GGQLVISHDPFVK------------------------------------------ 41 (192)
T ss_pred HHHHHHHHHHHC--CEEEEEEEee-CCeEEEECCCCCC------------------------------------------
Confidence 799999999999 9999999999 9999999999773
Q ss_pred CcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHH
Q 040734 153 GKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLI 232 (361)
Q Consensus 153 g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l 232 (361)
++|||+|+|++++ +..++||||.. .+.+++++++++++..++++|+||++..+.++
T Consensus 42 ------------~~PtLeEvL~~~~-~~~l~inIK~~-----------~l~~~l~~li~~~~~~~~vi~ssf~~~~l~~~ 97 (192)
T cd08584 42 ------------NGELLEDWLKEYN-HGTLILNIKAE-----------GLELRLKKLLAEYGITNYFFLDMSVPDIIKYL 97 (192)
T ss_pred ------------CCCCHHHHHHhcc-cccEEEEECch-----------hHHHHHHHHHHhcCCcceEEEEcCCHHHHHHH
Confidence 1599999999997 55689999954 46788999999999999999999999999999
Q ss_pred HHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEec----cCCCH
Q 040734 233 RKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYG----RLNNV 308 (361)
Q Consensus 233 ~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~----Tvn~~ 308 (361)
+.-.+.+.+..-- .+ .....+....+..-.++-. .....++.+.+++..++|.+++.=. --+..
T Consensus 98 ~~~~~~i~tr~Se-~E----------~~~~~~~~~~~~~~VW~D~-f~~~~~~~~~~~~~~~~~~~~c~VSpELh~~~~~ 165 (192)
T cd08584 98 ENGEKRTATRVSE-YE----------PIPTALSLYEKADWVWIDS-FTSLWLDNDLILKLLKAGKKICLVSPELHGRDHL 165 (192)
T ss_pred hcCCCeeEEeecc-cc----------cchHHHHhhccccEEEEec-ccccCCCHHHHHHHHHCCcEEEEECHHHcCCChH
Confidence 8765433332211 00 1111112222222222322 2333569999999999999998741 13334
Q ss_pred HHHHHHH--H--hcCccEEEeCChHH
Q 040734 309 AEAVYMQ--H--LMGIDGVIVDLVQE 330 (361)
Q Consensus 309 ~~~~~~~--~--~~GVdgI~TD~p~~ 330 (361)
+.+..+. . ..--++|+||+|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~CT~~p~~ 191 (192)
T cd08584 166 AEWEAKQYIEFLKENFDALCTKVPDL 191 (192)
T ss_pred HHHHHHHhhhhccccCeeEeccCccc
Confidence 4444321 1 12257999999975
No 44
>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=99.83 E-value=6.4e-21 Score=182.97 Aligned_cols=268 Identities=23% Similarity=0.260 Sum_probs=171.0
Q ss_pred CCCcccccccchhhhhccCCCCCCCCcceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCC
Q 040734 20 SPSLTRFSTSFSSCLEMNKSASFRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDG 99 (361)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg 99 (361)
+.++.++...+....+.++.-++..+...+|+|||+++ .+||||++||++|++.|+|.||+||++|+||
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~rga~g-----------~~penT~~A~~~a~~~Gad~ie~dV~~TsDg 110 (341)
T KOG2258|consen 42 LFSLLFLFSDPPPTASAHKNLFLHIGGWLIIAHRGASG-----------DAPENTLAAYKKAIADGADLIELDVQMTSDG 110 (341)
T ss_pred hhhhHhhhcCCccchhhhHHHhcCCCCceeEeccCCCC-----------CCCcccHHHHHHHHHcCCcEEEeccccCCCC
Confidence 33443333333333455555555444789999999776 7999999999999999999999999999999
Q ss_pred cEEEEcCCCcccccCCccccccccccCHHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCC-
Q 040734 100 WPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDP- 178 (361)
Q Consensus 100 ~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~- 178 (361)
++|++||.+.+|+++.. ..+.++||.|++++........ .| ....-.++|+|+|....+-.
T Consensus 111 ~~v~l~d~~~~r~~~v~---~~~~~lt~~e~~~l~~~~~~~~----------~~-----~~~~~~~~~~l~e~v~~~~~~ 172 (341)
T KOG2258|consen 111 VPVILHDSTTVRVTGVP---EIVFDLTWMELRKLGPKIENPF----------AG-----PIITLEKLLTLAEAVASVVGN 172 (341)
T ss_pred ceEEeecCcceeeecce---eeeccCCHHHHhccCccccCcc----------cc-----cccchhhhccHHHHHHHHHcC
Confidence 99999999999998876 6799999999999964210000 01 12345789999999999863
Q ss_pred CceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccc
Q 040734 179 NVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRN 258 (361)
Q Consensus 179 ~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~ 258 (361)
++.+.-|.|.. . ....++.+.+...+.+..++++++||++..+.++++..|.+.++..+.......
T Consensus 173 n~~~l~d~~~~-~-------~~~vl~~l~~~~~~~~~~~kv~v~s~~~~~l~~~~~~~~~~~i~~~~~~~~ls~------ 238 (341)
T KOG2258|consen 173 NVAMLNDVKLL-V-------VDKVLEALKNATSDFSLYDKVLVQSFNPIVLYRLKKLDPFILIGDTWRFTFLSG------ 238 (341)
T ss_pred Chhhhhhhhhh-h-------HHHHHHHHHHHhcCCCccceEEEEecCcHHHHHhccCCceEEecceecchhhcc------
Confidence 66666666611 0 113444444444444456789999999999999999888755544333211000
Q ss_pred cHHHHHHHHHhcCCcEEEcCCcc---------ccCChHHHHHHHHcCCEEEEeccCCCHH--HHHH----------HHHh
Q 040734 259 SLEEAVKVCLEGGLQGIVSEVKG---------VFRNPGAVTKIKESKLSLLTYGRLNNVA--EAVY----------MQHL 317 (361)
Q Consensus 259 ~l~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~--~~~~----------~~~~ 317 (361)
.++..++ ..++.+.... ......++...++.++.++++ ..+.+. .... ....
T Consensus 239 -~~dik~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~-~~~~e~~~~~d~~~~~~~~~~~~~~~ 311 (341)
T KOG2258|consen 239 -IEDIKKR-----AFAVVSSKLAIFPVSDSLVLAITKNVVAPLQKLNLVVYVE-VFNNEVVLAVDFSAAPTIELAGWITN 311 (341)
T ss_pred -chhhhcc-----cceeeechHHHHHHHHHHhhhhhcceeeehhcCCcEEEEE-EeeccceeeccccccCceEeeeeecc
Confidence 0011111 1112111111 012335677788888999888 666551 0111 1113
Q ss_pred cCccEEEeCChHHHHHHHHH
Q 040734 318 MGIDGVIVDLVQEITEAVYD 337 (361)
Q Consensus 318 ~GVdgI~TD~p~~~~~~l~~ 337 (361)
.|++|..|+++..+..+.+.
T Consensus 312 ~~~~~~~~~~~~~~~~l~~~ 331 (341)
T KOG2258|consen 312 VGIDGYITDFHLTAPRLTDN 331 (341)
T ss_pred ccccCceeeccchhhHhhcc
Confidence 56677777777666655443
No 45
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.59 E-value=1.7e-14 Score=131.15 Aligned_cols=200 Identities=16% Similarity=0.179 Sum_probs=115.5
Q ss_pred HHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHHHHhccCCccccccccccccccccCCcccc
Q 040734 78 FNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILH 157 (361)
Q Consensus 78 f~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~ 157 (361)
|..|++.||++||.|||++ ||+++|.||..+.+. . ..+.++++++|.++-..
T Consensus 15 l~~Al~~g~~svEaDV~l~-dg~l~V~Hd~~~l~~---~---~tl~~Lyl~pL~~~l~~--------------------- 66 (228)
T cd08577 15 LYDALSAGFGSIEADVWLV-NGDLLVAHDEVDLSP---A---RTLESLYLDPLLEILDQ--------------------- 66 (228)
T ss_pred hHHHHHcCCCEEEEeEEEE-CCEEEEEcChhHcCc---c---CCHHHHhHHHHHHHHHH---------------------
Confidence 7889999999999999999 999999999998765 2 67999999999886210
Q ss_pred cccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCC--------CCE-EEEcCCHHH
Q 040734 158 WNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAEN--------RPI-IFSTFQPDA 228 (361)
Q Consensus 158 ~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~--------~rv-~~~Sf~~~~ 228 (361)
.+.... ......+.|+||||......+ .++..+++.+++.+.. +.| ++.|-|...
T Consensus 67 ----~n~~~~------~~~~~~l~LlIDiKt~g~~t~------~~l~~~L~~~~~~~~~~~~~~~~~~pvtvV~tGn~p~ 130 (228)
T cd08577 67 ----NNGQAY------NDPEQPLQLLIDIKTDGESTY------PALEEVLKPYIDIGYLSYYDKLVPGPVTVVITGNRPK 130 (228)
T ss_pred ----cCCCCC------CCCCCceEEEEEECCCChHHH------HHHHHHHHHHHhcCceeecCcEEecCeEEEEeCCCCh
Confidence 001111 222246899999999765322 4566777777776643 233 444544332
Q ss_pred HHHHHHHCCCCCEEEEccCCCc-cccccccccHH--HHHHHHHhcCCcEEE-cCCccccCChHHHHHHHHcCCEEEEecc
Q 040734 229 AVLIRKLQSTYPVFFLTNGGTE-IFYDVRRNSLE--EAVKVCLEGGLQGIV-SEVKGVFRNPGAVTKIKESKLSLLTYGR 304 (361)
Q Consensus 229 l~~l~~~~p~~~~~~l~~~~~~-~~~d~~~~~l~--~~~~~~~~~~~~~i~-~~~~~~~~~~~~v~~~~~~Gl~v~~w~T 304 (361)
-. +. +..+....+++... .........+. ....+.+..+..+.. +.....-.-.++++.+|++|+++.+| |
T Consensus 131 ~~-~~---~~~~r~~f~D~~l~~~~~~~~~~~~~~~~S~~~~~~~~~~~~g~~~~~q~~~l~~~v~~a~~~Gl~vr~W-t 205 (228)
T cd08577 131 EE-VK---SQYPRYIFFDGRLDEDLPDEQLARLSPMISASFAKFSKWNGKGDTPEDEKEKLKSIIDKAHARGKKVRFW-G 205 (228)
T ss_pred hh-hc---cccCCeEEEeCChhhccccccccccceEEEccHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-c
Confidence 11 11 22222222221110 00000000000 000111111111100 00000001247899999999999999 8
Q ss_pred CCC-HHHHHHHHHhcCccEEEeCC
Q 040734 305 LNN-VAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 305 vn~-~~~~~~~~~~~GVdgI~TD~ 327 (361)
+++ ...+++++ .+|||+|+||.
T Consensus 206 v~~~~~~~~~l~-~~GVd~I~TDd 228 (228)
T cd08577 206 TPDRPNVWKTLM-ELGVDLLNTDD 228 (228)
T ss_pred cCChHHHHHHHH-HhCCCEEecCC
Confidence 864 77788886 69999999995
No 46
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=99.44 E-value=5.6e-12 Score=115.77 Aligned_cols=216 Identities=16% Similarity=0.110 Sum_probs=124.6
Q ss_pred chHHHHHHHHhCCCCEEEEeeeeecCCcE-EEEcCCCcccccCCccccccccccCHHHHhccCCcccccccccccccccc
Q 040734 73 NSIASFNSSAKYPLDFIEFDVQVTKDGWP-VIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGPQREQGKIGKSLLRKTK 151 (361)
Q Consensus 73 NTl~Af~~A~~~Gad~vE~DV~lTkDg~~-Vv~HD~~l~r~t~g~~~~~~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~ 151 (361)
||+..+..++.+||..||+||...++|.+ ..+||---+. +. +....-.+.++.+..
T Consensus 8 n~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc---~r---~c~~~~~f~~~l~~~----------------- 64 (265)
T cd08576 8 NDLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDC---FR---GCTAREMFDEILDYR----------------- 64 (265)
T ss_pred ccHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCcccc---cc---CCcHHHHHHHHHHHH-----------------
Confidence 89999999999999999999999998877 5667654332 11 111111111111110
Q ss_pred CCcccccccccCCcccCHHHHHHhCCCC-ceEEEEEecCCccchh-hhHHHHHHHHHHHHHHHhcCCCCEEEE--cC---
Q 040734 152 DGKILHWNVEIDDSLCTLQEAFQQVDPN-VGFNVELKFDDHIVYE-QDYLIRVIQAILKIVFEFAENRPIIFS--TF--- 224 (361)
Q Consensus 152 ~g~~~~~~~~~~~~iptL~EvL~~~~~~-~~l~iEiK~~~~~~~~-~~~~~~~v~~vl~~l~~~~~~~rv~~~--Sf--- 224 (361)
...+-|- ++.+ +.+.+|||.++..... -.....+++++++-.-..+...|+.+. ..
T Consensus 65 ----------r~~ttpg-------~~~~l~lv~lDlK~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra~~~~s~~~~~ 127 (265)
T cd08576 65 ----------RNGTTPG-------FRENLIFVWLDLKNPDLCGECSINAGRDLARKLLEPYWNGGSGARALYGFSIPSIT 127 (265)
T ss_pred ----------HhcCCCC-------ccceeEEEEEEcCCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccc
Confidence 0001111 3323 6889999998643111 011123333333332222212355443 22
Q ss_pred CHHHHHHHHHHCCC--CC------EEEEccCCCccccccccccHHHHHHHHHhcC------CcEEEcCCccccCChHHHH
Q 040734 225 QPDAAVLIRKLQST--YP------VFFLTNGGTEIFYDVRRNSLEEAVKVCLEGG------LQGIVSEVKGVFRNPGAVT 290 (361)
Q Consensus 225 ~~~~l~~l~~~~p~--~~------~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~------~~~i~~~~~~~~~~~~~v~ 290 (361)
+...++.++....+ .. +++.+... ..+.+..+.....| -+|+.-.......++++++
T Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~kvg~df~~n---------~~l~~~~~~~~~~~~~h~w~~dGitnC~~~~~~~~~lv~ 198 (265)
T cd08576 128 DSRFFKGIRDRLNSEEAVSGLLDKVGKDFSGN---------EDLEDIRRVYDYGGDGHIWQSDGITNCLEKYRTCARLRE 198 (265)
T ss_pred chHHHHHHHHHHHhcCchhhHHHhhcccccCC---------CChHHHHHHHHhcCcCceecCCCcccccccccccHHHHH
Confidence 35566767654322 11 12222221 12444444444443 1222211111245789999
Q ss_pred HHHHcCC-----EEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHHHHHHHhc
Q 040734 291 KIKESKL-----SLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDMI 339 (361)
Q Consensus 291 ~~~~~Gl-----~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~~~~ 339 (361)
.+|++|. +|++| |||+.+.+++++ .+||||||||+|+.+.+++++..
T Consensus 199 ~~~~rd~~g~i~kV~vW-TVn~~~~~~~ll-~~GVDGIITD~P~~i~~~l~~~~ 250 (265)
T cd08576 199 AIKKRDTPGYLGKVYGW-TSDKGSSVRKLL-RLGVDGIITNYPKRIIDVLKESE 250 (265)
T ss_pred HHHHcCCCCcCCeEEEE-eCCCHHHHHHHH-hcCCCEEEECCHHHHHHHHHhcc
Confidence 9999999 99999 999999999997 69999999999999999887643
No 47
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=98.90 E-value=2.5e-09 Score=105.40 Aligned_cols=301 Identities=34% Similarity=0.422 Sum_probs=188.6
Q ss_pred cchhhhhccC-CCCCCCCcceEEEecCCCCCCCCcchhhhcccccchHHH-HHHHHhCCCCEEEEeeeee-cCCc-EEEE
Q 040734 29 SFSSCLEMNK-SASFRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIAS-FNSSAKYPLDFIEFDVQVT-KDGW-PVIF 104 (361)
Q Consensus 29 ~~~~~~~~~~-~~~~~~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~A-f~~A~~~Gad~vE~DV~lT-kDg~-~Vv~ 104 (361)
.|..+.+... +..+.....-+++|||.+.+..+..+-.+...-+|+..+ |..|...++..+|+|++++ +|++ +|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~n~~~~~~~~~~~vg~~~~lg~f~~~~~~pls~~~~~~~~~~~~~~~~v~~ 102 (417)
T KOG2421|consen 23 VFLEEGNEDESRSLFSQVAFPVIGHFGVGKNQLLYPDEYVAVVGENSALGNFNSAAALPLSFIEFDVQRTNRDWVAPVII 102 (417)
T ss_pred cccccccccCCccccccccceeecccccceecccCCcceeEeecccccccccchhhhcCccccchheeeeeccccceeEe
Confidence 3445544444 555655667799999999886665555667789999999 9999999999999999999 9999 8889
Q ss_pred cCCCcccccCCccccccccccCHHHHhc------------------cCCccccccccccccccccCC-------------
Q 040734 105 HDDVIVSEDNGTIFEKRITELSLSEFLS------------------YGPQREQGKIGKSLLRKTKDG------------- 153 (361)
Q Consensus 105 HD~~l~r~t~g~~~~~~v~d~t~~eL~~------------------l~~~~d~g~~~~~~~~~~~~g------------- 153 (361)
|++...-...+ ....+.+-+++-. .+..+-.|. ++..+-|
T Consensus 103 ~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~-----~~~~s~~~~~~~~~~~~~~~ 173 (417)
T KOG2421|consen 103 PRNIVIEYRYG----ITSEDRTTEQLLEEFLSHGGQRDGIEDEQNRSDGSDVFGL-----YRGLSEGKRLERGCLRVRLT 173 (417)
T ss_pred cccccccccee----eeecCchhhheeeeeecccceeeeeeccccccCCCCcccc-----cccchhhhhhhhhhhheecc
Confidence 98654211111 0001111110000 000000011 1111111
Q ss_pred -ccccccc---ccCCcccCHHHHHHhCCC-CceEEEEEecCCccchhhh--HHHHHHHHHHHHHHHhcCCCCEEEEcCCH
Q 040734 154 -KILHWNV---EIDDSLCTLQEAFQQVDP-NVGFNVELKFDDHIVYEQD--YLIRVIQAILKIVFEFAENRPIIFSTFQP 226 (361)
Q Consensus 154 -~~~~~~~---~~~~~iptL~EvL~~~~~-~~~l~iEiK~~~~~~~~~~--~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~ 226 (361)
....++. .......|++++....+. ....+++.|.+....+... ........+.+.+...+-...++|++|.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~f~~~~~~~~~q~~l~~~~~~~~~~~~~~~~~~~~~fs~f~~ 253 (417)
T KOG2421|consen 174 PAVPKGNVLLSVIDDSFDTLKEVFKPSNSLDLSFVVELKFDDQTPRSEEQYELGHGFITVFSIVSERGDNRALIFSSFNE 253 (417)
T ss_pred ccccccccccccccccccchhhhccCCcccceeeeEEeecccCCcccccceeeeeEeeeeeeeeccCCccceeeeecccc
Confidence 1122222 245667788888887775 7889999998765433221 11112223333333344456789999999
Q ss_pred HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCC
Q 040734 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLN 306 (361)
Q Consensus 227 ~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn 306 (361)
+....++....-+|..++..++.....+.+..+...+..++..+.+.+..........++.+++.+++.|..+.+++--+
T Consensus 254 d~~~~~~~~~y~lP~~~~~~~G~~~l~~~~a~s~~~~~~~~l~~lv~~~~~~~~~~~l~~~~~~~w~~~~~~l~~g~rg~ 333 (417)
T KOG2421|consen 254 DICEELVGYSYVLPSLFLGTGGAELLPDTRASSLREAGQLCLEYLVIGPVSTVGPVDLRPSLINYWKKNGLSLNTGHRGN 333 (417)
T ss_pred ccchhhhcccccCCcccccCCceeEecchhhccccchhhhhhhhhhccccccccceecChHHhhhhcccchhhhccCCcC
Confidence 99999997766678888777766555555555666677777666665554444434568999999999998887774333
Q ss_pred -CHHHHHHHHHhcCccEEEeCChHHHHHHHHHhc
Q 040734 307 -NVAEAVYMQHLMGIDGVIVDLVQEITEAVYDMI 339 (361)
Q Consensus 307 -~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~~~~ 339 (361)
+........ ..|.++++.|....+.+.+.+..
T Consensus 334 g~sy~~~~~~-~~ent~~~~~~~~~~~ad~ve~d 366 (417)
T KOG2421|consen 334 GTSYTVLSQV-LRENTIVIVDNVLELGADLVEMD 366 (417)
T ss_pred Cchhhhhhhh-hccceeeeehhHHHhhhhHHHhh
Confidence 333332222 58999999999999988876653
No 48
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=98.61 E-value=5.8e-08 Score=58.80 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=23.8
Q ss_pred EEEEeccCCCHHHHHHHHHhcCccEEEeCChH
Q 040734 298 SLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQ 329 (361)
Q Consensus 298 ~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~ 329 (361)
+|+.| |+|+.+.+++++ .+|||||+||+|+
T Consensus 1 kV~~W-T~d~~~~~~~~l-~~GVDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFW-TPDKPASWRELL-DLGVDGIMTDYPD 30 (30)
T ss_dssp EEEEE-T--SHHHHHHHH-HHT-SEEEES-HH
T ss_pred CeEEe-cCCCHHHHHHHH-HcCCCEeeCCCCC
Confidence 58999 999999999997 6999999999985
No 49
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=98.51 E-value=1.2e-07 Score=85.45 Aligned_cols=42 Identities=24% Similarity=0.445 Sum_probs=39.9
Q ss_pred ccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcc
Q 040734 69 AIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIV 110 (361)
Q Consensus 69 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~ 110 (361)
..+|||++||..|++.||++||+|||-++||+|||+||.++.
T Consensus 26 l~~ess~eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tlt 67 (229)
T cd08592 26 LSSESSLEAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTLT 67 (229)
T ss_pred cCCccCHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCC
Confidence 578999999999999999999999999999999999998873
No 50
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=98.42 E-value=2.7e-07 Score=82.87 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcc
Q 040734 69 AIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIV 110 (361)
Q Consensus 69 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~ 110 (361)
..+|||++||..|++.||++||+|||-++||+|||+||.++.
T Consensus 26 l~~~ss~e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tlt 67 (229)
T cd08627 26 FSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTLT 67 (229)
T ss_pred cCCcccHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCC
Confidence 568999999999999999999999999999999999999883
No 51
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=98.11 E-value=3e-07 Score=90.73 Aligned_cols=69 Identities=33% Similarity=0.505 Sum_probs=55.8
Q ss_pred CCCCC-CcceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccc
Q 040734 40 ASFRI-PKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSE 112 (361)
Q Consensus 40 ~~~~~-~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~ 112 (361)
+.|+. ...+-++|||.+..+-.. .....|||+..+..|.+.|+|++|+|||+|+|.++|++||..+...
T Consensus 317 ~~w~~~~~~l~~g~rg~g~sy~~~----~~~~~ent~~~~~~~~~~~ad~ve~dvqlt~D~~~vvyh~f~~~~~ 386 (417)
T KOG2421|consen 317 NYWKKNGLSLNTGHRGNGTSYTVL----SQVLRENTIVIVDNVLELGADLVEMDVQLTKDLVPVVYHDFVLLVS 386 (417)
T ss_pred hhhcccchhhhccCCcCCchhhhh----hhhhccceeeeehhHHHhhhhHHHhhcccccCCceeeeccceeEEe
Confidence 34443 345789999998743211 1257999999999999999999999999999999999999988643
No 52
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=97.97 E-value=8.2e-06 Score=75.14 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
.-+-|+++|..|++.||++||+|||-++||+|||+|+.++
T Consensus 27 ~~~ss~~~y~~aL~~GcR~vElD~w~g~~gepvV~Hg~tl 66 (260)
T cd08597 27 RGPSSVEGYVRALQRGCRCVELDCWDGPNGEPVIYHGHTL 66 (260)
T ss_pred cCccCHHHHHHHHHhCCCEEEEEeEcCCCCCEEEEeCCcc
Confidence 4556889999999999999999999999999999999987
No 53
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=97.42 E-value=0.00021 Score=59.85 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=38.5
Q ss_pred ccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 69 AIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 69 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
.+.+|+..+|..+++.|++++|+||+.++||+++++|+.++
T Consensus 25 ~~~~~q~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 25 LWGESSVEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccCcccHHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcc
Confidence 57899999999999999999999999999999999998765
No 54
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=97.18 E-value=0.00047 Score=62.17 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=36.9
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
.-+-|.++|..|+..||.+||+|+|=-.||+|||+|..|+
T Consensus 27 ~~~ss~e~Y~~aL~~GcRcvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 27 LSQSRVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred cCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 4567889999999999999999999999999999998877
No 55
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=97.07 E-value=0.00067 Score=62.01 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
.-+-|.++|..|+..||.+||+|+|--.||+|||+|..|+
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 27 LSQSKVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred cCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 3456789999999999999999999999999999999887
No 56
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=97.04 E-value=0.0007 Score=61.99 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
..+-|.++|..|+..||.+||+|||=-.||+|||+|..|+
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 27 MSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred CCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 3456789999999999999999999989999999999888
No 57
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=97.01 E-value=0.00082 Score=61.82 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
.-+-|.++|..|+..||.+||+|+|--.||+|||+|..++
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 27 RGQSSVEGYIRALKRGCRCVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred cCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 3456899999999999999999999988999999999887
No 58
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=96.99 E-value=0.00084 Score=61.60 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
.-+-|.++|..|+..||.+||+|+|=-.||+|||+|..++
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 27 KGESSVELYSQVLLTGCRCVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred CCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 3457889999999999999999999989999999999887
No 59
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=96.99 E-value=0.00083 Score=61.73 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=36.8
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
.-+-+.++|..|+..||.+||+|||--.||+|||+|..++
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 27 VGPSDLDGYVSALRKGCRCLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred cCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEecCCCc
Confidence 3567889999999999999999999988999999999887
No 60
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=96.99 E-value=0.00082 Score=61.86 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=36.8
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
.-+-|.++|..|+..||.+||+|||--.||+|||+|..++
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08630 27 GGPSSTEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTL 66 (258)
T ss_pred cCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 3456899999999999999999999999999999999887
No 61
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=96.97 E-value=0.001 Score=60.23 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
..+-|.++|..|++.||.+||+|||-..||+|+|+|..++
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 27 SSRSSTAPIIEALLRGCRVIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred CCccCHHHHHHHHHhCCCEEEEEeecCCCCCeEEEeCCCC
Confidence 3456789999999999999999999999999999998775
No 62
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=96.96 E-value=0.00098 Score=61.22 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=35.9
Q ss_pred ccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 71 KENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 71 pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
-+-|.++|..|+..||.+||+|||=-.||+|||+|..++
T Consensus 28 ~~ss~~~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 28 SESSTEAYIRCLRMGCRCIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred cCCCHHHHHHHHHcCCcEEEEEeecCCCCCeEEeeCCCc
Confidence 456789999999999999999999989999999999887
No 63
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=96.96 E-value=0.001 Score=60.11 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=36.9
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
..+-|.++|..|+..||.+||+|+|=-.||+|||+|..++
T Consensus 27 ~~~Ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 27 TGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred CCccCHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCCC
Confidence 4567889999999999999999999999999999998876
No 64
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=96.94 E-value=0.00098 Score=61.25 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=36.5
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
.-+-|.++|..|+..||.+||+|+|--.||+|||+|..++
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08629 27 TGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTF 66 (258)
T ss_pred CCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 3456889999999999999999999999999999999887
No 65
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=96.88 E-value=0.0012 Score=59.75 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
.-+-|.++|..|+..||.+||+|||--.||+|||+|..++
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~wdg~~~ep~V~HG~t~ 66 (231)
T cd08598 27 AGDSSVEGYIRALQRGCRCVEIDVWDGDDGEPVVTHGYTL 66 (231)
T ss_pred CCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 3557899999999999999999999988899999998877
No 66
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=96.85 E-value=0.0013 Score=60.58 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
.-+-|.++|..|+..||.+||+|+|--.||+|||+|..++
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 27 KGPSSTEAYIRALKKGCRCVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred cCCccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 4456899999999999999999999999999999999877
No 67
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.81 E-value=0.0014 Score=60.26 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeec--CCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTK--DGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTk--Dg~~Vv~HD~~l 109 (361)
.-+-|.++|..|+..||.+||+|||=-. ||+|||+|..|+
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 27 GGKSSVEMYRQVLLAGCRCIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred cCCccHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCC
Confidence 3456899999999999999999999754 789999999887
No 68
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.74 E-value=0.0016 Score=59.84 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=34.8
Q ss_pred ccchHHHHHHHHhCCCCEEEEeeeeec--CCcEEEEcCCCc
Q 040734 71 KENSIASFNSSAKYPLDFIEFDVQVTK--DGWPVIFHDDVI 109 (361)
Q Consensus 71 pENTl~Af~~A~~~Gad~vE~DV~lTk--Dg~~Vv~HD~~l 109 (361)
-+-|.++|..|+..||.+||+|+|=-. ||+|||+|..++
T Consensus 28 g~ss~e~y~~aL~~GcRcvElD~wdG~~~~~ePiV~HG~tl 68 (258)
T cd08623 28 GNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTM 68 (258)
T ss_pred CccCHHHHHHHHHcCCCEEEEEeeCCCCCCCCCEEeeCCCc
Confidence 446889999999999999999999765 689999999877
No 69
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.72 E-value=0.0017 Score=59.89 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=35.3
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeec--CCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTK--DGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTk--Dg~~Vv~HD~~l 109 (361)
.-+-|.++|..|+..||.+||+|+|=-. ||+|||+|..++
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~ePvV~HG~tl 68 (261)
T cd08624 27 SGLSSPEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTM 68 (261)
T ss_pred CCccCHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCc
Confidence 3456899999999999999999999653 789999999887
No 70
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=96.61 E-value=0.0023 Score=58.83 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=35.8
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecC--CcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKD--GWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkD--g~~Vv~HD~~l 109 (361)
.-+-|.++|..|+..||.+||+|+|=-.| |+|||+|..++
T Consensus 27 ~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~eP~V~HG~tl 68 (257)
T cd08591 27 GGKSSVEMYRQVLLSGCRCIELDCWDGKGEDEEPIITHGKTM 68 (257)
T ss_pred cCcccHHHHHHHHHhCCcEEEEEeecCCCCCCCCEEeeCCCC
Confidence 34578899999999999999999998774 99999999887
No 71
>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function.
Probab=96.57 E-value=0.55 Score=43.14 Aligned_cols=196 Identities=19% Similarity=0.270 Sum_probs=109.3
Q ss_pred ccchHHHHHHHHhCCCCEEEEeeeeec------CCcEEEEcCCCcccccCCccccccccccCHHHHhccCCccccccccc
Q 040734 71 KENSIASFNSSAKYPLDFIEFDVQVTK------DGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGPQREQGKIGK 144 (361)
Q Consensus 71 pENTl~Af~~A~~~Gad~vE~DV~lTk------Dg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~eL~~l~~~~d~g~~~~ 144 (361)
.-|+.+.++.|++..+.+||.||.+-+ +++||..|.+.. -+|+
T Consensus 10 avNsk~~L~~aL~~~~~miEaDV~l~~~~~~~~~~~PIMahPP~~------------~Sdl------------------- 58 (244)
T PF10223_consen 10 AVNSKAELEEALSSDIMMIEADVLLGGLNTGNEDGIPIMAHPPAT------------DSDL------------------- 58 (244)
T ss_pred ccCCHHHHHHHhCCCCCEEEEEEEeecccCCCCCCCceeeCCCCC------------CCcC-------------------
Confidence 349999999999999999999999983 789999997533 1334
Q ss_pred cccccccCCcccccccccCCcccCHHHHHHhCC-CCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhc--CCCCEEE
Q 040734 145 SLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVD-PNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFA--ENRPIIF 221 (361)
Q Consensus 145 ~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~-~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~--~~~rv~~ 221 (361)
||+|.|+.+. ...++-||+|+.. .+...+++|++.. ....+++
T Consensus 59 -----------------------tLee~L~~v~~~~kGIKLDFKs~e-----------av~pSl~~L~~~~~~l~~PvWi 104 (244)
T PF10223_consen 59 -----------------------TLEEWLDEVLSSRKGIKLDFKSIE-----------AVEPSLDLLAKLSDKLTRPVWI 104 (244)
T ss_pred -----------------------cHHHHHHHHhccCcEEEEeccCHH-----------HHHHHHHHHHHHhhccCCCeeE
Confidence 4555555443 4668889999753 3333444444321 3334444
Q ss_pred E------cC--------C-HHHHHHHHHHCCCCCE--EEEccCCCcc-ccccccccHHHHHHHHHh---cCCcEEEcCCc
Q 040734 222 S------TF--------Q-PDAAVLIRKLQSTYPV--FFLTNGGTEI-FYDVRRNSLEEAVKVCLE---GGLQGIVSEVK 280 (361)
Q Consensus 222 ~------Sf--------~-~~~l~~l~~~~p~~~~--~~l~~~~~~~-~~d~~~~~l~~~~~~~~~---~~~~~i~~~~~ 280 (361)
. .+ | ..++...++.+|+.-+ |+.+..+... ........+.+..+.++. .. ..+....+
T Consensus 105 NADIl~Gp~~~~~~~~Vd~~~Fl~~v~~~fP~~tLS~GWTT~~~~~~~~~~Yt~~~v~~M~~l~~~~~~l~-Q~VTFpvR 183 (244)
T PF10223_consen 105 NADILPGPNGPTIPGPVDAKEFLSLVAEKFPHATLSLGWTTRWGPEVPNGGYTWEMVEEMLELCKGINQLP-QPVTFPVR 183 (244)
T ss_pred eeeeccCCCCCCCCcccCHHHHHHHHHHhCCCEEEecCcccccCccCCCccccHHHHHHHHHHHHhhccCC-Cceeeeeh
Confidence 2 12 2 2477788888886433 4433222110 011122334555556555 21 12222222
Q ss_pred c--ccCChHHHHHH-H-HcCCEEEEeccCCC---HHHHHHHHHhcCccEEEeCChHHHH
Q 040734 281 G--VFRNPGAVTKI-K-ESKLSLLTYGRLNN---VAEAVYMQHLMGIDGVIVDLVQEIT 332 (361)
Q Consensus 281 ~--~~~~~~~v~~~-~-~~Gl~v~~w~Tvn~---~~~~~~~~~~~GVdgI~TD~p~~~~ 332 (361)
- +..+..-+..+ . .....+-+|...+| .+++.++....|.+-|..|-|+.++
T Consensus 184 A~l~~~S~~~l~wLL~~s~r~SLTvWs~~~D~v~v~~Ll~lr~~~~~~rVyyDlpe~~~ 242 (244)
T PF10223_consen 184 AGLARQSWPQLSWLLQQSPRYSLTVWSSKSDPVSVEDLLYLRRNFDKSRVYYDLPEPLR 242 (244)
T ss_pred hhhhhccHHHHHHHHcCCCCceEEEEecCCCCccHHHHHHHHHhCCCcEEEEeCChhhh
Confidence 1 11111222333 2 23688899943333 3344455445899999999987664
No 72
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.44 E-value=0.0033 Score=58.07 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=35.0
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeee--cCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVT--KDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lT--kDg~~Vv~HD~~l 109 (361)
.-+-|.+||..|+..||.+||+|+|=- .|++|||+|..++
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~eP~v~Hg~t~ 68 (258)
T cd08625 27 TGLSSVEMYRQVLLTGCRCIELDCWKGRPPEEEPFITHGFTM 68 (258)
T ss_pred CCccCHHHHHHHHHcCCCEEEEEecCCCCCCCCCEEeeCCcc
Confidence 455789999999999999999999965 3579999999887
No 73
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.86 E-value=0.0071 Score=62.84 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=39.0
Q ss_pred ccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 69 AIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 69 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
..-|-|++||..|+.+||.+||+|.|=-.||.+|++|..|+
T Consensus 333 lrSESSleaYar~LrMGCRCIELDCWdGpd~~pvIyHG~T~ 373 (1267)
T KOG1264|consen 333 LRSESSLEAYARCLRMGCRCIELDCWDGPDGKPVIYHGHTR 373 (1267)
T ss_pred cccccCHHHHHHHHHhCCeEEEeecccCCCCCceEEeccce
Confidence 46889999999999999999999999999999999999987
No 74
>PLN02230 phosphoinositide phospholipase C 4
Probab=95.07 E-value=0.022 Score=58.66 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=36.2
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
..+-|.++|..|+..||.+||+|+|--.+|+|||+|..++
T Consensus 140 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~t~ 179 (598)
T PLN02230 140 SSNCSELPIADALRRGVRVVELDLWPRGTDDVCVKHGRTL 179 (598)
T ss_pred cCccCHHHHHHHHHcCCcEEEEeccCCCCCCcEEeeCCCC
Confidence 3456889999999999999999999878899999999887
No 75
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.78 E-value=0.027 Score=58.55 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=36.8
Q ss_pred ccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 71 KENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 71 pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
-+-|+++|..|++.||.+||+|+|--.+|.|||+|..|+
T Consensus 315 g~sSvegyI~ALk~GcR~vElD~Wdg~~~epvV~HG~Tl 353 (746)
T KOG0169|consen 315 GPSSVEGYIRALKKGCRCVELDCWDGPNGEPVVYHGHTL 353 (746)
T ss_pred CccccHHHHHHHHhCCeEEEEecccCCCCCeeEecCccc
Confidence 466889999999999999999999999999999999988
No 76
>PLN02228 Phosphoinositide phospholipase C
Probab=94.44 E-value=0.042 Score=56.34 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=34.7
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCc-EEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGW-PVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~-~Vv~HD~~l 109 (361)
..+-|.++|..|+..||.+||+|+|=-.||. |||+|..++
T Consensus 131 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~ 171 (567)
T PLN02228 131 NSRSSVEPIVQALRKGVKVIELDLWPNPSGNAAEVRHGRTL 171 (567)
T ss_pred cCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCEEEeCCcc
Confidence 4556889999999999999999999655565 899999887
No 77
>PLN02952 phosphoinositide phospholipase C
Probab=93.83 E-value=0.069 Score=55.18 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=35.1
Q ss_pred ccccchHHHHHHHHhCCCCEEEEeeeeecCC-cEEEEcCCCc
Q 040734 69 AIKENSIASFNSSAKYPLDFIEFDVQVTKDG-WPVIFHDDVI 109 (361)
Q Consensus 69 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg-~~Vv~HD~~l 109 (361)
...+-|.++|..|+..||.+||+|+|=-.|| .|||+|..++
T Consensus 147 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~ 188 (599)
T PLN02952 147 LSSDCSEVPIVKALQRGVRVIELDLWPGSTKDEILVLHGRTL 188 (599)
T ss_pred cCCcCCHHHHHHHHHcCCcEEEEEeecCCCCCCCEEEeCCcc
Confidence 3456788999999999999999999976665 4899999887
No 78
>PLN02223 phosphoinositide phospholipase C
Probab=93.40 E-value=0.081 Score=53.69 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=33.0
Q ss_pred chHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 73 NSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 73 NTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
-|.++|..|+..||.+||+|+|--.++.++|.|..|+
T Consensus 135 ss~e~y~~aL~~GcRcvElD~W~~~~~~~~v~hG~tl 171 (537)
T PLN02223 135 YSIEPIIDALEQGVRVVELDLLPDGKDGICVRPKWNF 171 (537)
T ss_pred ccHHHHHHHHHcCCcEEEEEecCCCCCCCeEeeCCce
Confidence 6899999999999999999999655667889999887
No 79
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=93.29 E-value=0.27 Score=45.93 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHhcCCcEEEcCCccc----------------cCChHHHHHHHHcCCEEEEeccCCCH-----------HH
Q 040734 258 NSLEEAVKVCLEGGLQGIVSEVKGV----------------FRNPGAVTKIKESKLSLLTYGRLNNV-----------AE 310 (361)
Q Consensus 258 ~~l~~~~~~~~~~~~~~i~~~~~~~----------------~~~~~~v~~~~~~Gl~v~~w~Tvn~~-----------~~ 310 (361)
....+.+.+|.++|+.++.++..+- ..-+++++.++++|+.|..| .-... ++
T Consensus 32 ~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw-~~~~~~~~~~~~~~~~~~ 110 (273)
T PF10566_consen 32 ETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLW-YHSETGGNVANLEKQLDE 110 (273)
T ss_dssp HHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEE-EECCHTTBHHHHHCCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEE-EeCCcchhhHhHHHHHHH
Confidence 3466778899999999988876652 12369999999999999999 43333 22
Q ss_pred -HHHHHHhcCccEEEeCChHH
Q 040734 311 -AVYMQHLMGIDGVIVDLVQE 330 (361)
Q Consensus 311 -~~~~~~~~GVdgI~TD~p~~ 330 (361)
+.++ .++||.||=+|+.+.
T Consensus 111 ~f~~~-~~~Gv~GvKidF~~~ 130 (273)
T PF10566_consen 111 AFKLY-AKWGVKGVKIDFMDR 130 (273)
T ss_dssp HHHHH-HHCTEEEEEEE--SS
T ss_pred HHHHH-HHcCCCEEeeCcCCC
Confidence 3344 479999999998654
No 80
>PLN02222 phosphoinositide phospholipase C 2
Probab=92.91 E-value=0.11 Score=53.49 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=34.3
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCc-EEEEcCCCcc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGW-PVIFHDDVIV 110 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~-~Vv~HD~~l~ 110 (361)
..+-|.++|..|+..||.+||+|+|=-.||. ++|+|..++.
T Consensus 128 ~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~~~v~HG~tlt 169 (581)
T PLN02222 128 SSDCSEVPIIDALKKGVRVIELDIWPNSDKDDIDVLHGMTLT 169 (581)
T ss_pred cCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCeEeeCCccc
Confidence 4556789999999999999999999666665 5799998873
No 81
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=91.85 E-value=0.28 Score=46.00 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=36.2
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
+......++..+++.|+.++|+||+..+|+.++|+|..+.
T Consensus 32 ~~~tq~~~~~~qL~~G~R~lDir~~~~~~~~~~v~HG~~~ 71 (274)
T cd00137 32 WGLTQTEMYRQQLLSGCRCVDIRCWDGKPEEPIIYHGPTF 71 (274)
T ss_pred cCcCcHHHHHHHHHcCCcEEEEEeecCCCCCeEEEECCcc
Confidence 4678899999999999999999999999999999997654
No 82
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=90.88 E-value=2 Score=39.92 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=70.7
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccC
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRL 305 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tv 305 (361)
.+.++.+|+..++.|+.+++.... +....+++..+.+++.|++|+.++---+--..++++.++++|+..+...+.
T Consensus 77 ~~~~~~~r~~~~~~p~vlm~Y~N~-----i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap 151 (258)
T PRK13111 77 FELVREIREKDPTIPIVLMTYYNP-----IFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAP 151 (258)
T ss_pred HHHHHHHHhcCCCCCEEEEecccH-----HhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 355666775668889876664432 122357788889999999998765211111247888889999998875466
Q ss_pred CCHH-HHHHHHH----------hcCccEEEeCChHHHHHHHHHhc
Q 040734 306 NNVA-EAVYMQH----------LMGIDGVIVDLVQEITEAVYDMI 339 (361)
Q Consensus 306 n~~~-~~~~~~~----------~~GVdgI~TD~p~~~~~~l~~~~ 339 (361)
+++. .++.... ..|+.|.-+..+..+.++++...
T Consensus 152 ~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk 196 (258)
T PRK13111 152 TTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLK 196 (258)
T ss_pred CCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHH
Confidence 6643 3444321 14778887788877777776544
No 83
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=89.57 E-value=0.51 Score=50.07 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=43.8
Q ss_pred CCCCCC--CcceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeee--ecCCcEEEEcCCCcc
Q 040734 39 SASFRI--PKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQV--TKDGWPVIFHDDVIV 110 (361)
Q Consensus 39 ~~~~~~--~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~l--TkDg~~Vv~HD~~l~ 110 (361)
++.|.. ..+.+-||.=++. -+.+-|++++-.||.+||+|.|= +.|++||+-|..+.-
T Consensus 321 ~hYFINSSHNTYlTg~Ql~g~---------------sSvEmYRQvLLsGcRCVELDcWdgk~~d~EPvITHG~tm~ 381 (1189)
T KOG1265|consen 321 SHYFINSSHNTYLTGGQLGGK---------------SSVEMYRQVLLSGCRCVELDCWDGKGEDEEPVITHGFTMT 381 (1189)
T ss_pred hhhhccccccceeecccccCc---------------chHHHHHHHHHhcCceEEeeeecCCCCCCCceeecccchh
Confidence 455532 4456666655544 38899999999999999999995 568999999999873
No 84
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=88.86 E-value=0.8 Score=38.47 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=31.7
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
+..+...++...++.|+.+++++|+...++.++++|....
T Consensus 24 ~~~~Q~~~i~~QL~~GiR~lDlrv~~~~~~~~~v~Hg~~~ 63 (146)
T PF00388_consen 24 WSKTQSWSIREQLESGIRYLDLRVWDGNDGELVVYHGITS 63 (146)
T ss_dssp HC-B-SHHHHHHHHTT--EEEEEEEEETTSSEEEEETTSE
T ss_pred ccCcchHhHHHHHhccCceEEEEEEcCCCCceEEEeCCEe
Confidence 4567778999999999999999999999999999996554
No 85
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=88.23 E-value=6.2 Score=36.48 Aligned_cols=143 Identities=14% Similarity=0.014 Sum_probs=87.7
Q ss_pred cCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcC------CCCEEEEcCCHHHHHHHHHHCCCCC
Q 040734 167 CTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAE------NRPIIFSTFQPDAAVLIRKLQSTYP 240 (361)
Q Consensus 167 ptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~------~~rv~~~Sf~~~~l~~l~~~~p~~~ 240 (361)
..|.++|+...++..++.|+|..+|..-. .....-...+.....++|. .+.-+|+ -+.+.|+.+++.. .+|
T Consensus 33 r~f~~AL~~~~~~~~vIAEvKkaSPS~G~-ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~-Gs~e~L~~v~~~v-~~P 109 (254)
T COG0134 33 RDFYAALKEASGKPAVIAEVKKASPSKGL-IREDFDPVEIAKAYEEGGAAAISVLTDPKYFQ-GSFEDLRAVRAAV-DLP 109 (254)
T ss_pred ccHHHHHHhcCCCceEEEEeecCCCCCCc-ccccCCHHHHHHHHHHhCCeEEEEecCccccC-CCHHHHHHHHHhc-CCC
Confidence 67888888876689999999987764210 0000112224455555542 2333332 3677788887764 566
Q ss_pred EEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccC--ChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhc
Q 040734 241 VFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFR--NPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLM 318 (361)
Q Consensus 241 ~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~--~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~ 318 (361)
+..= |+--. ..-+..++.+|++.+-+-...+-. -.++++.+++.|+.+.+= |++.+++++.+ ..
T Consensus 110 vL~K---------DFiiD--~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVE--Vh~~eEl~rAl-~~ 175 (254)
T COG0134 110 VLRK---------DFIID--PYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVE--VHNEEELERAL-KL 175 (254)
T ss_pred eeec---------cCCCC--HHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEE--ECCHHHHHHHH-hC
Confidence 5421 11101 123456778888876544333211 258999999999999998 78999999987 58
Q ss_pred CccEEEeC
Q 040734 319 GIDGVIVD 326 (361)
Q Consensus 319 GVdgI~TD 326 (361)
|.+-|=.|
T Consensus 176 ga~iIGIN 183 (254)
T COG0134 176 GAKIIGIN 183 (254)
T ss_pred CCCEEEEe
Confidence 87766433
No 86
>PLN02591 tryptophan synthase
Probab=87.97 E-value=4.2 Score=37.62 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=31.6
Q ss_pred hHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 286 PGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 286 ~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
.++++.+++. +++|.+=.-++++++++++. .+|+||++.-..
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~-~~GADGvIVGSa 220 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIA-GWGADGVIVGSA 220 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHH-hcCCCEEEECHH
Confidence 4667778774 56676533699999998886 699999997653
No 87
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=87.83 E-value=22 Score=32.60 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 287 GAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 287 ~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
+.++.+++. ++.+.+=+-+++++.+.++. .. +||++.-
T Consensus 177 ~~i~~lr~~~~~pI~vggGI~~~e~~~~~~-~~-ADgvVvG 215 (242)
T cd04724 177 ELIKRIRKYTDLPIAVGFGISTPEQAAEVA-KY-ADGVIVG 215 (242)
T ss_pred HHHHHHHhcCCCcEEEEccCCCHHHHHHHH-cc-CCEEEEC
Confidence 667777765 57777765799999998886 57 9999986
No 88
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=87.66 E-value=6 Score=36.79 Aligned_cols=209 Identities=13% Similarity=0.066 Sum_probs=108.0
Q ss_pred CcceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeee---cCCcEEEE-cCCCcccccCCccccc
Q 040734 45 PKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVT---KDGWPVIF-HDDVIVSEDNGTIFEK 120 (361)
Q Consensus 45 ~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lT---kDg~~Vv~-HD~~l~r~t~g~~~~~ 120 (361)
.++.+|.|==++. .-.|-|+..++...+.|+|+||+-+=.| .||-.|-. |..- ..+|.
T Consensus 10 ~~~~li~yi~aG~-----------P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~A---L~~G~---- 71 (258)
T PRK13111 10 GRKALIPYITAGD-----------PDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRA---LAAGV---- 71 (258)
T ss_pred CCccEEEEEeCCC-----------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHH---HHcCC----
Confidence 3445666655544 4467788889999999999999988765 34422211 1111 11231
Q ss_pred cccccCHHHHhccCCccccccccccccccccCCcccccccc-cCCcccCHHHHHHhCCC-Cc-e-EEEEEecCCccchhh
Q 040734 121 RITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVE-IDDSLCTLQEAFQQVDP-NV-G-FNVELKFDDHIVYEQ 196 (361)
Q Consensus 121 ~v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~-~~~~iptL~EvL~~~~~-~~-~-l~iEiK~~~~~~~~~ 196 (361)
--+-.++.+++++.+. .. .|.. ...+ +..-=.-++.+++.++. ++ . +..|+-.
T Consensus 72 -~~~~~~~~~~~~r~~~-~~---~p~v----------lm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~-------- 128 (258)
T PRK13111 72 -TLADVFELVREIREKD-PT---IPIV----------LMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPP-------- 128 (258)
T ss_pred -CHHHHHHHHHHHHhcC-CC---CCEE----------EEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCH--------
Confidence 1122344455442100 00 0000 0000 00001245566666651 21 2 2233321
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCEEEEcCCH--HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcE
Q 040734 197 DYLIRVIQAILKIVFEFAENRPIIFSTFQP--DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQG 274 (361)
Q Consensus 197 ~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~--~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~ 274 (361)
.-.+.+.+..+++++. .|.+.+-+. +-++.+.+..+.+-. +.. ..|.++
T Consensus 129 ----ee~~~~~~~~~~~gl~-~I~lvap~t~~eri~~i~~~s~gfIY--~vs----------------------~~GvTG 179 (258)
T PRK13111 129 ----EEAEELRAAAKKHGLD-LIFLVAPTTTDERLKKIASHASGFVY--YVS----------------------RAGVTG 179 (258)
T ss_pred ----HHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHhCCCcEE--EEe----------------------CCCCCC
Confidence 2244566667778764 566666554 667777777666522 111 122233
Q ss_pred EEcCCccccCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 275 IVSEVKGVFRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 275 i~~~~~~~~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
....... ...++++.+++. ++++.+=+-+++++++.++. .. +||++.-.
T Consensus 180 ~~~~~~~--~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~-~~-ADGviVGS 229 (258)
T PRK13111 180 ARSADAA--DLAELVARLKAHTDLPVAVGFGISTPEQAAAIA-AV-ADGVIVGS 229 (258)
T ss_pred cccCCCc--cHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHH-Hh-CCEEEEcH
Confidence 2111111 134678888876 67776544699999998886 34 99999754
No 89
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=87.07 E-value=11 Score=35.14 Aligned_cols=41 Identities=10% Similarity=0.166 Sum_probs=30.8
Q ss_pred hHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 286 PGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 286 ~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
.++++.+++. ++++.+=+-|+++++.+++. ..|+|||+.-.
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~-~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIK-GWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHH-hcCCCEEEECH
Confidence 4667777764 56665543699999998886 69999999765
No 90
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=86.65 E-value=7.1 Score=34.33 Aligned_cols=93 Identities=11% Similarity=0.048 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc-CChHHHHHHHHcCCEEEE
Q 040734 223 TFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF-RNPGAVTKIKESKLSLLT 301 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~~~~Gl~v~~ 301 (361)
.+..+.++.+++..|+.++..-..-.. ......+.+.+.|++++.++..... ...++++.++++|+++.+
T Consensus 38 ~~g~~~i~~i~~~~~~~~i~~~~~v~~---------~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v 108 (202)
T cd04726 38 SEGMEAVRALREAFPDKIIVADLKTAD---------AGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQV 108 (202)
T ss_pred HhCHHHHHHHHHHCCCCEEEEEEEecc---------ccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEE
Confidence 445788999998888888754322110 0112235566889999887764310 124788999999999985
Q ss_pred --eccCCCHHHHHHHHHhcCccEEEeC
Q 040734 302 --YGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 302 --w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
- +..++.+..+++ ..|+|.|...
T Consensus 109 ~~~-~~~t~~e~~~~~-~~~~d~v~~~ 133 (202)
T cd04726 109 DLI-GVEDPEKRAKLL-KLGVDIVILH 133 (202)
T ss_pred EEe-CCCCHHHHHHHH-HCCCCEEEEc
Confidence 6 788888887764 5899987763
No 91
>PLN02591 tryptophan synthase
Probab=86.15 E-value=6.5 Score=36.36 Aligned_cols=107 Identities=9% Similarity=0.164 Sum_probs=66.9
Q ss_pred HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCC
Q 040734 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLN 306 (361)
Q Consensus 227 ~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn 306 (361)
+.++.+|+ .++.|+.++..... +....+++..+.+++.|++++.+.---.--..++.+.++++|+..+..-+-+
T Consensus 68 ~~~~~~r~-~~~~p~ilm~Y~N~-----i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Pt 141 (250)
T PLN02591 68 SMLKEVAP-QLSCPIVLFTYYNP-----ILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPT 141 (250)
T ss_pred HHHHHHhc-CCCCCEEEEecccH-----HHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 34455553 35678666554322 1223567778889999999987652111113578889999999987773455
Q ss_pred CHH-HHHHHHH----------hcCccEEEeCChHHHHHHHHHhc
Q 040734 307 NVA-EAVYMQH----------LMGIDGVIVDLVQEITEAVYDMI 339 (361)
Q Consensus 307 ~~~-~~~~~~~----------~~GVdgI~TD~p~~~~~~l~~~~ 339 (361)
+++ .++.... ..||.|.-++.+..+.++++...
T Consensus 142 t~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk 185 (250)
T PLN02591 142 TPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELK 185 (250)
T ss_pred CCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHH
Confidence 543 3443221 26788888888888887776544
No 92
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=86.08 E-value=14 Score=34.17 Aligned_cols=148 Identities=15% Similarity=0.026 Sum_probs=84.8
Q ss_pred CCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCC------CCEEEEcCCHHHHHHHHHHC
Q 040734 163 DDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAEN------RPIIFSTFQPDAAVLIRKLQ 236 (361)
Q Consensus 163 ~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~------~rv~~~Sf~~~~l~~l~~~~ 236 (361)
..+...|.+.|...+++..++-|+|..++..-. .....-...+.....+.|.. ++-+| .-+.+.|..+++..
T Consensus 31 ~~~~~~f~~aL~~~~~~~~vIAEiKraSPs~G~-i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F-~Gs~~dL~~v~~~~ 108 (254)
T PF00218_consen 31 APPPRSFKEALRQNEGRISVIAEIKRASPSKGD-IREDFDPAEIAKAYEEAGAAAISVLTEPKFF-GGSLEDLRAVRKAV 108 (254)
T ss_dssp SS-TTHHHHHHHSHTSS-EEEEEE-SEETTTEE-SBSS-SHHHHHHHHHHTT-SEEEEE--SCCC-HHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHhcCCCCCeEEEEeecCCCCCCc-cCccCCHHHHHHHHHhcCCCEEEEECCCCCC-CCCHHHHHHHHHHh
Confidence 355678888888866689999999986653100 00001123344445555432 11111 12467777777764
Q ss_pred CCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccC--ChHHHHHHHHcCCEEEEeccCCCHHHHHHH
Q 040734 237 STYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFR--NPGAVTKIKESKLSLLTYGRLNNVAEAVYM 314 (361)
Q Consensus 237 p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~--~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~ 314 (361)
++|+..- |+--. +.-+..++..|++++.+-...+-. -.++++.++..|+.+.+= |++.+++++.
T Consensus 109 -~~PvL~K---------DFIid--~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVE--Vh~~~El~~a 174 (254)
T PF00218_consen 109 -DLPVLRK---------DFIID--PYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVE--VHNEEELERA 174 (254)
T ss_dssp -SS-EEEE---------S---S--HHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEE--ESSHHHHHHH
T ss_pred -CCCcccc---------cCCCC--HHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEE--ECCHHHHHHH
Confidence 5666541 11111 122455778899988766654411 148899999999999997 7899999998
Q ss_pred HHhcCccEEEeCC
Q 040734 315 QHLMGIDGVIVDL 327 (361)
Q Consensus 315 ~~~~GVdgI~TD~ 327 (361)
+ ..|.+-|-.|.
T Consensus 175 l-~~~a~iiGINn 186 (254)
T PF00218_consen 175 L-EAGADIIGINN 186 (254)
T ss_dssp H-HTT-SEEEEES
T ss_pred H-HcCCCEEEEeC
Confidence 7 68988776655
No 93
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=85.69 E-value=5.9 Score=36.96 Aligned_cols=108 Identities=9% Similarity=0.123 Sum_probs=68.7
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccC
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRL 305 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tv 305 (361)
.+.++.+|+ .++.|+.+++.... +....+++.++.+.+.|++++.++---.--..++++.++++|+.....-+.
T Consensus 80 ~~~~~~~r~-~~~~p~vlm~Y~N~-----i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 80 LSILSEVNG-EIKAPIVIFTYYNP-----VLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred HHHHHHHhc-CCCCCEEEEecccH-----HHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECC
Confidence 345666664 37788766654422 222356778888899999998766422112357888999999888655356
Q ss_pred CCH-HHHHHHHH----------hcCccEEEeCChHHHHHHHHHhc
Q 040734 306 NNV-AEAVYMQH----------LMGIDGVIVDLVQEITEAVYDMI 339 (361)
Q Consensus 306 n~~-~~~~~~~~----------~~GVdgI~TD~p~~~~~~l~~~~ 339 (361)
+++ +.++.+.. ..|+.|.-++.+..+.++++...
T Consensus 154 tT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir 198 (263)
T CHL00200 154 TSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIK 198 (263)
T ss_pred CCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHH
Confidence 664 34544321 25777777777777777765543
No 94
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=85.67 E-value=8.1 Score=35.97 Aligned_cols=106 Identities=13% Similarity=0.149 Sum_probs=67.5
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccC
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRL 305 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tv 305 (361)
.+.++.+|+..+++|..+++...+ +....++...+.+++.|++++.+.---.--...+.+.++++|+..+...+.
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Np-----i~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaP 156 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNP-----IFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAP 156 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccH-----HHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCC
Confidence 567778888889999999886543 122346777888999999987654211111347888889999998877566
Q ss_pred CCHHH-HHHHHH----------hcCccEEEeCChHHHHHHHH
Q 040734 306 NNVAE-AVYMQH----------LMGIDGVIVDLVQEITEAVY 336 (361)
Q Consensus 306 n~~~~-~~~~~~----------~~GVdgI~TD~p~~~~~~l~ 336 (361)
+++.+ +++... .+||.|+-......+.+.++
T Consensus 157 tt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~ 198 (265)
T COG0159 157 TTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVK 198 (265)
T ss_pred CCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHH
Confidence 66544 444321 14666666553333444443
No 95
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=84.64 E-value=19 Score=31.27 Aligned_cols=141 Identities=15% Similarity=0.137 Sum_probs=91.3
Q ss_pred cCCcccCHHHHHHhCC---CCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHH-HCC
Q 040734 162 IDDSLCTLQEAFQQVD---PNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRK-LQS 237 (361)
Q Consensus 162 ~~~~iptL~EvL~~~~---~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~-~~p 237 (361)
-...+..+.+....++ +.+.+++|+=..-.. . +..++-+.+.+ ..+ =+++. -...+...++ ..+
T Consensus 30 L~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~~---~---e~~i~fi~~~~----~pd-GIIST-k~~~i~~Akk~~~~ 97 (181)
T COG1954 30 LTGHILNIKEIVKKLKNRGKTVFIHVDLVEGLSN---D---EVAIEFIKEVI----KPD-GIIST-KSNVIKKAKKLGIL 97 (181)
T ss_pred EechhhhHHHHHHHHHhCCcEEEEEeHHhcccCC---c---hHHHHHHHHhc----cCC-eeEEc-cHHHHHHHHHcCCc
Confidence 3456899999999997 245666665433111 0 11222333322 222 24444 4455554444 455
Q ss_pred CCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHH-HcCCEEEEeccCCCHHHHHHHHH
Q 040734 238 TYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIK-ESKLSLLTYGRLNNVAEAVYMQH 316 (361)
Q Consensus 238 ~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~-~~Gl~v~~w~Tvn~~~~~~~~~~ 316 (361)
-+.+.|+.+. .+++..+..+...+++.+-.-.. +-|+.++.+. +.+.++++=|-+++.+++...+
T Consensus 98 aIqR~FilDS----------~Al~~~~~~i~~~~pD~iEvLPG---v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al- 163 (181)
T COG1954 98 AIQRLFILDS----------IALEKGIKQIEKSEPDFIEVLPG---VMPKVIKEITEKTHIPIIAGGLIETEEEVREAL- 163 (181)
T ss_pred eeeeeeeecH----------HHHHHHHHHHHHcCCCEEEEcCc---ccHHHHHHHHHhcCCCEEeccccccHHHHHHHH-
Confidence 6677777654 35778888888888887654333 3689999884 4568999988899999999998
Q ss_pred hcCccEEEeCCh
Q 040734 317 LMGIDGVIVDLV 328 (361)
Q Consensus 317 ~~GVdgI~TD~p 328 (361)
..|+-.+.|-+-
T Consensus 164 ~aGA~avSTs~~ 175 (181)
T COG1954 164 KAGAVAVSTSNT 175 (181)
T ss_pred HhCcEEEeecch
Confidence 599999987543
No 96
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=84.13 E-value=2.1 Score=37.36 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=89.6
Q ss_pred cCCcccCHHHHHHhCC---CCceEEEEEecC-CccchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHC-
Q 040734 162 IDDSLCTLQEAFQQVD---PNVGFNVELKFD-DHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQ- 236 (361)
Q Consensus 162 ~~~~iptL~EvL~~~~---~~~~l~iEiK~~-~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~- 236 (361)
....+.+|.++.+.++ +.+.+++|+=.. +.+ +.-++.++++...+ =+.|-....+++.++..
T Consensus 26 l~g~I~~l~~~v~~~~~~gK~vfVHiDli~Gl~~D-----------~~~i~~L~~~~~~d--GIISTk~~~i~~Ak~~gl 92 (175)
T PF04309_consen 26 LTGDIGNLKDIVKRLKAAGKKVFVHIDLIEGLSRD-----------EAGIEYLKEYGKPD--GIISTKSNLIKRAKKLGL 92 (175)
T ss_dssp -SEECCCHHHHHHHHHHTT-EEEEECCGEETB-SS-----------HHHHHHHHHTT--S--EEEESSHHHHHHHHHTT-
T ss_pred EcCcHHHHHHHHHHHHHcCCEEEEEehhcCCCCCC-----------HHHHHHHHHcCCCc--EEEeCCHHHHHHHHHcCC
Confidence 4467899999999986 356777776543 111 22345555554333 34466888888888752
Q ss_pred CCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHH-cCCEEEEeccCCCHHHHHHHH
Q 040734 237 STYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKE-SKLSLLTYGRLNNVAEAVYMQ 315 (361)
Q Consensus 237 p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~-~Gl~v~~w~Tvn~~~~~~~~~ 315 (361)
..+.+.|+.+. .+++..++..+..+.+.+-+-... -|.+++++++ .+.++++=|-+.+.+++..++
T Consensus 93 ~tIqRiFliDS----------~al~~~~~~i~~~~PD~vEilPg~---~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al 159 (175)
T PF04309_consen 93 LTIQRIFLIDS----------SALETGIKQIEQSKPDAVEILPGV---MPKVIKKIREETNIPIIAGGLIRTKEDVEEAL 159 (175)
T ss_dssp EEEEEEE-SSH----------HHHHHHHHHHHHHT-SEEEEESCC---HHHHHCCCCCCCSS-EEEESS--SHHHHHHHC
T ss_pred EEEEEeeeecH----------HHHHHHHHHHhhcCCCEEEEchHH---HHHHHHHHHHhcCCCEEeecccCCHHHHHHHH
Confidence 23445565543 457788888888888876433322 4677777644 458899998999999999987
Q ss_pred HhcCccEEEeCChHH
Q 040734 316 HLMGIDGVIVDLVQE 330 (361)
Q Consensus 316 ~~~GVdgI~TD~p~~ 330 (361)
..|+.+|.|-.++.
T Consensus 160 -~aGa~aVSTS~~~L 173 (175)
T PF04309_consen 160 -KAGADAVSTSNKEL 173 (175)
T ss_dssp -CTTCEEEEE--HHH
T ss_pred -HcCCEEEEcCChHh
Confidence 69999999988764
No 97
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=83.95 E-value=31 Score=30.85 Aligned_cols=137 Identities=12% Similarity=0.081 Sum_probs=79.2
Q ss_pred CCCCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCC-Cccccc
Q 040734 176 VDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGG-TEIFYD 254 (361)
Q Consensus 176 ~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~-~~~~~d 254 (361)
++.++.+....+..++.... ..+..+.+.+.+.|. ..++.-+.+.++.+++. .++|+...+... .. .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~a~~~~G~---~~~~~~~~~~i~~i~~~-~~~Pil~~~~~d~~~--~~ 71 (221)
T PRK01130 3 LKGGLIVSCQALPGEPLHSP-----EIMAAMALAAVQGGA---VGIRANGVEDIKAIRAV-VDVPIIGIIKRDYPD--SE 71 (221)
T ss_pred cCCCEEEEecCCCCCCCCCH-----HHHHHHHHHHHHCCC---eEEEcCCHHHHHHHHHh-CCCCEEEEEecCCCC--CC
Confidence 34456666666655543211 234445555555543 22332357888888876 478876443211 00 00
Q ss_pred cccccHHHHHHHHHhcCCcEEEcCCccc-----cCChHHHHHHHH-cCCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 255 VRRNSLEEAVKVCLEGGLQGIVSEVKGV-----FRNPGAVTKIKE-SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~v~~~~~-~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
+......+.++.+...|++.+.+..... ....++++.+++ .|+.+.+= +.+.+++.++. +.|+|.|.++
T Consensus 72 ~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~--v~t~ee~~~a~-~~G~d~i~~~ 146 (221)
T PRK01130 72 VYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMAD--CSTLEEGLAAQ-KLGFDFIGTT 146 (221)
T ss_pred ceECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEe--CCCHHHHHHHH-HcCCCEEEcC
Confidence 1001122335667788998777654321 112478999999 88888765 56778887775 6999988653
No 98
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=83.95 E-value=9.1 Score=34.04 Aligned_cols=96 Identities=19% Similarity=0.098 Sum_probs=61.4
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccC
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRL 305 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tv 305 (361)
.+.++.+++.+|++-++--+-. +. +..+.+.+.|+..+..+. .++++++.++++|+.++.= +
T Consensus 47 ~~~I~~l~~~~p~~~vGAGTV~-----------~~-e~a~~a~~aGA~FivSP~----~~~~v~~~~~~~~i~~iPG--~ 108 (196)
T PF01081_consen 47 LEAIEALRKEFPDLLVGAGTVL-----------TA-EQAEAAIAAGAQFIVSPG----FDPEVIEYAREYGIPYIPG--V 108 (196)
T ss_dssp HHHHHHHHHHHTTSEEEEES-------------SH-HHHHHHHHHT-SEEEESS------HHHHHHHHHHTSEEEEE--E
T ss_pred HHHHHHHHHHCCCCeeEEEecc-----------CH-HHHHHHHHcCCCEEECCC----CCHHHHHHHHHcCCcccCC--c
Confidence 4566677778888766643321 12 334556688888877653 2899999999999988764 4
Q ss_pred CCHHHHHHHHHhcCccEEEeCChHHH---HHHHHHhcCC
Q 040734 306 NNVAEAVYMQHLMGIDGVIVDLVQEI---TEAVYDMIKP 341 (361)
Q Consensus 306 n~~~~~~~~~~~~GVdgI~TD~p~~~---~~~l~~~~~~ 341 (361)
-++.|+...+ ++|++.|=- +|... .+|++.+..|
T Consensus 109 ~TptEi~~A~-~~G~~~vK~-FPA~~~GG~~~ik~l~~p 145 (196)
T PF01081_consen 109 MTPTEIMQAL-EAGADIVKL-FPAGALGGPSYIKALRGP 145 (196)
T ss_dssp SSHHHHHHHH-HTT-SEEEE-TTTTTTTHHHHHHHHHTT
T ss_pred CCHHHHHHHH-HCCCCEEEE-ecchhcCcHHHHHHHhcc
Confidence 5788888886 699985543 44443 4566665544
No 99
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=83.31 E-value=16 Score=35.07 Aligned_cols=59 Identities=8% Similarity=-0.054 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
..+.++.+...++..+..... .|..++.+|+.|++|+. ++-+..+.+++. +.|+|+|+.
T Consensus 71 ~~~~l~vi~e~~v~~V~~~~G----~P~~~~~lk~~Gi~v~~--~v~s~~~A~~a~-~~GaD~vVa 129 (320)
T cd04743 71 RAAQLAVVRAIKPTFALIAGG----RPDQARALEAIGISTYL--HVPSPGLLKQFL-ENGARKFIF 129 (320)
T ss_pred hHHHHHHHHhcCCcEEEEcCC----ChHHHHHHHHCCCEEEE--EeCCHHHHHHHH-HcCCCEEEE
Confidence 345566777778877765543 45558999999999884 577888888886 699999984
No 100
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=82.75 E-value=21 Score=32.94 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=35.2
Q ss_pred CChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 284 RNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 284 ~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
+...+++.+|+.|+.|.+. -|.+.+++..+. .+|||.+.=..
T Consensus 194 iv~~iv~la~~l~~~vvaE-GVEt~~ql~~L~-~~G~~~~QGyl 235 (256)
T COG2200 194 IVRAIVALAHKLGLTVVAE-GVETEEQLDLLR-ELGCDYLQGYL 235 (256)
T ss_pred HHHHHHHHHHHCCCEEEEe-ecCCHHHHHHHH-HcCCCeEeecc
Confidence 3578899999999999999 699999998885 79999665433
No 101
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=82.73 E-value=5.4 Score=34.78 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=38.6
Q ss_pred ChHHHHHHHHcCCEEEEecc------CCCHHHHHHHHHhcC-ccEEEeCChHHHHHHHHH
Q 040734 285 NPGAVTKIKESKLSLLTYGR------LNNVAEAVYMQHLMG-IDGVIVDLVQEITEAVYD 337 (361)
Q Consensus 285 ~~~~v~~~~~~Gl~v~~w~T------vn~~~~~~~~~~~~G-VdgI~TD~p~~~~~~l~~ 337 (361)
-++.++.+|++|+.|++. . -+|...++++. ..+ +|||+|=++..+..+.+.
T Consensus 33 l~~~v~~~~~~gK~vfVH-iDli~Gl~~D~~~i~~L~-~~~~~dGIISTk~~~i~~Ak~~ 90 (175)
T PF04309_consen 33 LKDIVKRLKAAGKKVFVH-IDLIEGLSRDEAGIEYLK-EYGKPDGIISTKSNLIKRAKKL 90 (175)
T ss_dssp HHHHHHHHHHTT-EEEEE-CCGEETB-SSHHHHHHHH-HTT--SEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEE-ehhcCCCCCCHHHHHHHH-HcCCCcEEEeCCHHHHHHHHHc
Confidence 479999999999999987 3 24666676665 565 999999999999877653
No 102
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=82.71 E-value=14 Score=33.00 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCC---HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCC
Q 040734 203 IQAILKIVFEFAENRPIIFSTFQ---PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEV 279 (361)
Q Consensus 203 v~~vl~~l~~~~~~~rv~~~Sf~---~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~ 279 (361)
+..+.+.+.+.|.. -+-+..-+ .+.++.+++.+|++.++--+-. +. +..+.+...|+..+..+.
T Consensus 22 a~~~~~al~~~Gi~-~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl-----------~~-~~a~~a~~aGA~FivsP~ 88 (204)
T TIGR01182 22 ALPLAKALIEGGLR-VLEVTLRTPVALDAIRLLRKEVPDALIGAGTVL-----------NP-EQLRQAVDAGAQFIVSPG 88 (204)
T ss_pred HHHHHHHHHHcCCC-EEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCC-----------CH-HHHHHHHHcCCCEEECCC
Confidence 34455555555542 22233222 3456677777776555543321 12 234556678998887654
Q ss_pred ccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHH-H--HHHHHHhcCC
Q 040734 280 KGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQE-I--TEAVYDMIKP 341 (361)
Q Consensus 280 ~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~-~--~~~l~~~~~~ 341 (361)
. ++++++.++++|+.++.= +-++.|+...+ ++|.|.|-- +|.. + ..|++.+..|
T Consensus 89 ~----~~~v~~~~~~~~i~~iPG--~~TptEi~~A~-~~Ga~~vKl-FPA~~~GG~~yikal~~p 145 (204)
T TIGR01182 89 L----TPELAKHAQDHGIPIIPG--VATPSEIMLAL-ELGITALKL-FPAEVSGGVKMLKALAGP 145 (204)
T ss_pred C----CHHHHHHHHHcCCcEECC--CCCHHHHHHHH-HCCCCEEEE-CCchhcCCHHHHHHHhcc
Confidence 2 899999999999988773 67888988886 699986544 4433 3 3566665544
No 103
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=81.90 E-value=27 Score=30.87 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=43.7
Q ss_pred cHHHHHHHHHhcCCcEEEcCCccc-------cCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 259 SLEEAVKVCLEGGLQGIVSEVKGV-------FRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 259 ~l~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
+++++.. +.+.|++.+....... -.+=++++.+.+.+.+|++=|-++++++..+++ ++|++.|+...
T Consensus 101 t~ee~~~-A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~tpe~a~~al-~~GA~aVVVGs 174 (192)
T PF04131_consen 101 TLEEAIN-AAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIHTPEQAAKAL-ELGAHAVVVGS 174 (192)
T ss_dssp SHHHHHH-HHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS--SHHHHHHHH-HTT-SEEEE-H
T ss_pred CHHHHHH-HHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCCCHHHHHHHH-hcCCeEEEECc
Confidence 3555443 4467777766433221 012278999999999999998899999999998 69999999764
No 104
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=81.76 E-value=5.2 Score=37.22 Aligned_cols=107 Identities=19% Similarity=0.233 Sum_probs=65.9
Q ss_pred HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCC
Q 040734 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLN 306 (361)
Q Consensus 227 ~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn 306 (361)
+.++.+|+..++.|+.+++.... +....+++..+.+++.|++|+.+.---.--..++.+.++++|+.++..-+.+
T Consensus 76 ~~~~~ir~~~~~~pivlm~Y~N~-----i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~ 150 (259)
T PF00290_consen 76 ELVKEIRKKEPDIPIVLMTYYNP-----IFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPT 150 (259)
T ss_dssp HHHHHHHHHCTSSEEEEEE-HHH-----HHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETT
T ss_pred HHHHHHhccCCCCCEEEEeeccH-----HhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCC
Confidence 45677776778899887765321 1123456677788889999876542111123577788899999987764555
Q ss_pred CHHH-HHHHHH----------hcCccEEEeCChHHHHHHHHHh
Q 040734 307 NVAE-AVYMQH----------LMGIDGVIVDLVQEITEAVYDM 338 (361)
Q Consensus 307 ~~~~-~~~~~~----------~~GVdgI~TD~p~~~~~~l~~~ 338 (361)
++.+ +++... ..|+.|.-++.+..+.++++..
T Consensus 151 t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~i 193 (259)
T PF00290_consen 151 TPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRI 193 (259)
T ss_dssp S-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHH
Confidence 5444 444321 1567777777778787777654
No 105
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.09 E-value=41 Score=30.23 Aligned_cols=118 Identities=18% Similarity=0.102 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCCCCEEEE--cC-CHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCC
Q 040734 203 IQAILKIVFEFAENRPIIFS--TF-QPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEV 279 (361)
Q Consensus 203 v~~vl~~l~~~~~~~rv~~~--Sf-~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~ 279 (361)
+..+.+.+.+.|.. -+=+. +- -.+.++.+++.+|+..++--+-. +. +..+.+...|+..+..+.
T Consensus 29 a~~i~~al~~~Gi~-~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl-----------~~-~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 29 AVPLAKALVAGGLP-VLEVTLRTPAALEAIRLIAKEVPEALIGAGTVL-----------NP-EQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred HHHHHHHHHHcCCC-EEEEecCCccHHHHHHHHHHHCCCCEEEEeecc-----------CH-HHHHHHHHcCCCEEECCC
Confidence 34455556555542 12222 22 24567788888887555433211 11 335667788998887654
Q ss_pred ccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH---HHHHHHhcCC
Q 040734 280 KGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI---TEAVYDMIKP 341 (361)
Q Consensus 280 ~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~---~~~l~~~~~~ 341 (361)
.+++.++.+++.|+.++.= +-++.++.++. ++|++.|-- +|... ..+++.+..|
T Consensus 96 ----~~~~vi~~a~~~~i~~iPG--~~TptEi~~a~-~~Ga~~vKl-FPa~~~gg~~~lk~l~~p 152 (212)
T PRK05718 96 ----LTPPLLKAAQEGPIPLIPG--VSTPSELMLGM-ELGLRTFKF-FPAEASGGVKMLKALAGP 152 (212)
T ss_pred ----CCHHHHHHHHHcCCCEeCC--CCCHHHHHHHH-HCCCCEEEE-ccchhccCHHHHHHHhcc
Confidence 2789999999999887643 34677787775 699998877 77653 4777766554
No 106
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=81.00 E-value=24 Score=33.71 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=65.9
Q ss_pred HHHHHHHHHHCC-CCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc-------CChHHHHHHHHc-C
Q 040734 226 PDAAVLIRKLQS-TYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF-------RNPGAVTKIKES-K 296 (361)
Q Consensus 226 ~~~l~~l~~~~p-~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~v~~~~~~-G 296 (361)
.++++.+++..| ++|+..=...+.. +. ....+..+.+...|++.++++..... .+.+.+..++++ +
T Consensus 120 ~eiv~avr~~~~~~~pVsvKiR~g~~---~~--~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~ 194 (312)
T PRK10550 120 YQGAKAMREAVPAHLPVTVKVRLGWD---SG--ERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLT 194 (312)
T ss_pred HHHHHHHHHhcCCCcceEEEEECCCC---Cc--hHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcC
Confidence 345566666665 5777655443321 10 11345556677888888887654320 134567777664 6
Q ss_pred CEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHH
Q 040734 297 LSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEIT 332 (361)
Q Consensus 297 l~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~ 332 (361)
++|+.-|-|.+++++.+++..-|+|||+.-+.....
T Consensus 195 iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~n 230 (312)
T PRK10550 195 IPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNI 230 (312)
T ss_pred CcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhC
Confidence 889888889999999998755799999986644433
No 107
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=80.91 E-value=23 Score=32.08 Aligned_cols=67 Identities=22% Similarity=0.270 Sum_probs=49.5
Q ss_pred HHHHHHH---HHhcCCcEEEcCCccccCChHHHHHHHHc--CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 260 LEEAVKV---CLEGGLQGIVSEVKGVFRNPGAVTKIKES--KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 260 l~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~~~~~~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
.+.+..+ ++.+++..+-+++.....++++++.+++. ++++.+=|-+++++++++++ ..|+|+|++..
T Consensus 134 ~e~~~ayA~aae~~g~~ivyLe~SG~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~-~aGAD~VVVGs 205 (219)
T cd02812 134 PEDAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMA-EAGADTIVVGN 205 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEeCCCCCcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEECc
Confidence 4444444 45666666666654445788999999876 68887766899999999987 68999998754
No 108
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.02 E-value=19 Score=32.20 Aligned_cols=117 Identities=13% Similarity=0.015 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCH---HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCC
Q 040734 203 IQAILKIVFEFAENRPIIFSTFQP---DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEV 279 (361)
Q Consensus 203 v~~vl~~l~~~~~~~rv~~~Sf~~---~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~ 279 (361)
+..+.+.+.+-|.. -+=+.--++ +.++.+++.+|++.++--+-. +. +..+.+...|...+..+.
T Consensus 18 a~~ia~al~~gGi~-~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl-----------~~-e~a~~ai~aGA~FivSP~ 84 (201)
T PRK06015 18 AVPLARALAAGGLP-AIEITLRTPAALDAIRAVAAEVEEAIVGAGTIL-----------NA-KQFEDAAKAGSRFIVSPG 84 (201)
T ss_pred HHHHHHHHHHCCCC-EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCc-----------CH-HHHHHHHHcCCCEEECCC
Confidence 34455555555542 222322233 445556666666544432211 12 234556688888887654
Q ss_pred ccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChH-HH--HHHHHHhcC
Q 040734 280 KGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQ-EI--TEAVYDMIK 340 (361)
Q Consensus 280 ~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~-~~--~~~l~~~~~ 340 (361)
.++++++.++++|+.++.= +-++.|+...+ ++|.+.|-- +|. .+ .+|++.+..
T Consensus 85 ----~~~~vi~~a~~~~i~~iPG--~~TptEi~~A~-~~Ga~~vK~-FPa~~~GG~~yikal~~ 140 (201)
T PRK06015 85 ----TTQELLAAANDSDVPLLPG--AATPSEVMALR-EEGYTVLKF-FPAEQAGGAAFLKALSS 140 (201)
T ss_pred ----CCHHHHHHHHHcCCCEeCC--CCCHHHHHHHH-HCCCCEEEE-CCchhhCCHHHHHHHHh
Confidence 2889999999999887664 56788888875 699885543 443 33 466665543
No 109
>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins. This subfamily corresponds to the catalytic domain present in Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1 (SaPLC1) and similar proteins. The typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) catalyzes Ca2+-independent hydrolysis of the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). The catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. In contrast, SaPLC1 is the first known natural Ca2+-dependent bacterial PI-PLC. It is more closely related to the eukaryotic PI-PLCs rather than the typical bacterial PI-PLCs. It participates in PI metabolism to generate myo-inositol-1-phosphate and myo-inositol-1:2-cy
Probab=79.52 E-value=2.5 Score=40.49 Aligned_cols=42 Identities=12% Similarity=-0.030 Sum_probs=34.1
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecC--------------------CcEEEEcCCCccc
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKD--------------------GWPVIFHDDVIVS 111 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkD--------------------g~~Vv~HD~~l~r 111 (361)
..+++-..+..+++.|+..+|+|||...+ +.+-|+|..+++.
T Consensus 42 ~~~~s~~~i~~QLd~GvR~LELDv~~d~~gg~~a~P~~~~~~~~~~~~~~g~~V~H~~~~d~ 103 (324)
T cd08589 42 GLDYSHPPLADQLDSGVRQLELDVWADPEGGRYAHPLGLAPDDAAVMKKPGWKVSHIPDLDN 103 (324)
T ss_pred cccCCCccHHHHHhhCcceEEEEEeecCCcccccccccccccccccccCCCeEEEcCCCcCC
Confidence 44577789999999999999999998664 5577888877753
No 110
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=78.42 E-value=21 Score=33.14 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=60.5
Q ss_pred HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCC
Q 040734 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLN 306 (361)
Q Consensus 227 ~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn 306 (361)
+.++.+++..+++|+.+++...+ +....+++.++.+.+.|++++.++.--.--..++++.++++|+....--+.+
T Consensus 76 ~~v~~ir~~~~~~plv~m~Y~Np-----i~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~ 150 (256)
T TIGR00262 76 ELLKKVRQKHPNIPIGLLTYYNL-----IFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPN 150 (256)
T ss_pred HHHHHHHhcCCCCCEEEEEeccH-----HhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCC
Confidence 45666665556788766654432 1122456667778899999987664321113478889999998865331455
Q ss_pred CH-HHHHHHHHh----------cCccEEEeCChHHHHHHHHHh
Q 040734 307 NV-AEAVYMQHL----------MGIDGVIVDLVQEITEAVYDM 338 (361)
Q Consensus 307 ~~-~~~~~~~~~----------~GVdgI~TD~p~~~~~~l~~~ 338 (361)
++ +.+..+... .|+.|.-+..+..+.+.+++.
T Consensus 151 T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~l 193 (256)
T TIGR00262 151 ADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRL 193 (256)
T ss_pred CCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHH
Confidence 53 344443221 234444334455555565544
No 111
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=77.74 E-value=24 Score=31.15 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHCCC--CCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHc-CCEEE-
Q 040734 225 QPDAAVLIRKLQST--YPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKES-KLSLL- 300 (361)
Q Consensus 225 ~~~~l~~l~~~~p~--~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~-Gl~v~- 300 (361)
+.+..+.+++..+. .+++++.+. ++++..+.+...++++++++... +++.++.+++. |..++
T Consensus 36 ~~~~a~~l~~~~~~~~~~V~v~vn~-----------~~~~i~~ia~~~~~d~Vqlhg~e---~~~~~~~l~~~~~~~~i~ 101 (203)
T cd00405 36 SPEQAREIVAALPPFVKRVGVFVNE-----------DLEEILEIAEELGLDVVQLHGDE---SPEYCAQLRARLGLPVIK 101 (203)
T ss_pred CHHHHHHHHHhCCCCCcEEEEEeCC-----------CHHHHHHHHHhcCCCEEEECCCC---CHHHHHHHHhhcCCcEEE
Confidence 45556667766665 556655543 36677788889999999988652 56788888763 54443
Q ss_pred EeccCCCHHHHH--HHHHhcCccEEEeCChH
Q 040734 301 TYGRLNNVAEAV--YMQHLMGIDGVIVDLVQ 329 (361)
Q Consensus 301 ~w~Tvn~~~~~~--~~~~~~GVdgI~TD~p~ 329 (361)
+- .+.+..+.. +.. ..|+|.|+.|...
T Consensus 102 ~i-~~~~~~~~~~~~~~-~~~aD~il~dt~~ 130 (203)
T cd00405 102 AI-RVKDEEDLEKAAAY-AGEVDAILLDSKS 130 (203)
T ss_pred EE-ecCChhhHHHhhhc-cccCCEEEEcCCC
Confidence 12 233333332 222 3789999987753
No 112
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=77.07 E-value=12 Score=33.55 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=48.7
Q ss_pred HHHhcCCcEEEcCCccc--------cCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC----hHHHHH
Q 040734 266 VCLEGGLQGIVSEVKGV--------FRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL----VQEITE 333 (361)
Q Consensus 266 ~~~~~~~~~i~~~~~~~--------~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~----p~~~~~ 333 (361)
+|.+.|++.+....... -.+-.+++.+.+.|..|++=|-+|+|+.+++.+ .+|+++|+.-. |..+.+
T Consensus 142 ~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~-~~Ga~aVvVGsAITRp~~It~ 220 (229)
T COG3010 142 NAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYNTPEQAKKAI-EIGADAVVVGSAITRPEEITQ 220 (229)
T ss_pred HHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCCCHHHHHHHH-HhCCeEEEECcccCCHHHHHH
Confidence 45567776654332211 012378999999999999998999999999987 69999998754 444444
Q ss_pred HH
Q 040734 334 AV 335 (361)
Q Consensus 334 ~l 335 (361)
+.
T Consensus 221 ~F 222 (229)
T COG3010 221 WF 222 (229)
T ss_pred HH
Confidence 43
No 113
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=76.83 E-value=26 Score=31.43 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=47.2
Q ss_pred cHHHHHHH---HHhcCCcEEEcCC-ccc--cCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 259 SLEEAVKV---CLEGGLQGIVSEV-KGV--FRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 259 ~l~~~~~~---~~~~~~~~i~~~~-~~~--~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
..+++..+ ++.+|+..+++.. +.. ..++++++.+++. ++.+.+=+.+.+.+++++++ ..|+|+|++
T Consensus 132 ~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~-~~GAD~VVV 204 (205)
T TIGR01769 132 KPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIV-LAGADAIVT 204 (205)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHH-HcCCCEEEe
Confidence 34444444 4567777777655 222 3578999999776 57776655799999999886 589999986
No 114
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=76.60 E-value=46 Score=30.33 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=58.9
Q ss_pred HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc--cCChHHHHHHHHcCCEEEEecc
Q 040734 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV--FRNPGAVTKIKESKLSLLTYGR 304 (361)
Q Consensus 227 ~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~--~~~~~~v~~~~~~Gl~v~~w~T 304 (361)
++++.+++. ++|+..=...+.. ....+..+.+.+.|+++++++.... ..+-+.|..++ .++.|+.-|-
T Consensus 130 eiv~avr~~--~~pVsvKir~g~~-------~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgnGg 199 (233)
T cd02911 130 EFIKALKET--GVPVSVKIRAGVD-------VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGNNS 199 (233)
T ss_pred HHHHHHHhc--CCCEEEEEcCCcC-------cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEECC
Confidence 344555542 5676654443310 1234455667788999888764321 12335555555 5788888778
Q ss_pred CCCHHHHHHHHHhcCccEEEeCCh
Q 040734 305 LNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 305 vn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
|.+.+++.+++ ..|+|+|+.-+.
T Consensus 200 I~s~eda~~~l-~~GaD~VmiGR~ 222 (233)
T cd02911 200 VTTIESAKEMF-SYGADMVSVARA 222 (233)
T ss_pred cCCHHHHHHHH-HcCCCEEEEcCC
Confidence 99999999998 589999998776
No 115
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=76.22 E-value=44 Score=30.80 Aligned_cols=134 Identities=18% Similarity=0.170 Sum_probs=80.7
Q ss_pred ccCHHHHHHhCC------CCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEE-EEcCCHHHHHHHHHHCCC
Q 040734 166 LCTLQEAFQQVD------PNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPII-FSTFQPDAAVLIRKLQST 238 (361)
Q Consensus 166 iptL~EvL~~~~------~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~-~~Sf~~~~l~~l~~~~p~ 238 (361)
--|-+|++.... ..-++-||+=.++.--+ .+....+++.-.+++ .++ .++ +++-|+...+++...-|.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Ll--pd~~~tv~aa~~L~~-~Gf--~vlpyc~dd~~~ar~l~~~G~~ 146 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLL--PDPIETLKAAEILVK-EGF--TVLPYCTDDPVLAKRLEDAGCA 146 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccc--cCHHHHHHHHHHHHH-CCC--EEEEEeCCCHHHHHHHHHcCCC
Confidence 446666665543 34578888876542111 122233444333332 233 355 778889998888887554
Q ss_pred CCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHh
Q 040734 239 YPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHL 317 (361)
Q Consensus 239 ~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~ 317 (361)
+- ...+. -.| .... ..++++|+.+++. ++.|++-+-+.++++..+++ +
T Consensus 147 ~v---mPlg~--------------------pIG-----sg~G--i~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Am-e 195 (248)
T cd04728 147 AV---MPLGS--------------------PIG-----SGQG--LLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM-E 195 (248)
T ss_pred Ee---CCCCc--------------------CCC-----CCCC--CCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHH-H
Confidence 32 00000 011 0111 2368899999884 78999988899999999997 6
Q ss_pred cCccEEEeCC-------hHHHHHHH
Q 040734 318 MGIDGVIVDL-------VQEITEAV 335 (361)
Q Consensus 318 ~GVdgI~TD~-------p~~~~~~l 335 (361)
+|+|||..+. |..+.+.+
T Consensus 196 lGAdgVlV~SAIt~a~dP~~ma~af 220 (248)
T cd04728 196 LGADAVLLNTAIAKAKDPVAMARAF 220 (248)
T ss_pred cCCCEEEEChHhcCCCCHHHHHHHH
Confidence 9999998754 55554443
No 116
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=75.99 E-value=55 Score=28.78 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc-CChHHHHHHHHcCCEEEEe
Q 040734 224 FQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF-RNPGAVTKIKESKLSLLTY 302 (361)
Q Consensus 224 f~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~~~~Gl~v~~w 302 (361)
+..+.++.+++..|+..+..-..- .|. . ...++.+...|++.+.++...-. ...++++.++++|+++.+-
T Consensus 38 ~g~~~i~~l~~~~~~~~i~~d~k~-----~d~--~--~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 38 EGIEAVKEMKEAFPDRKVLADLKT-----MDA--G--EYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred hCHHHHHHHHHHCCCCEEEEEEee-----ccc--h--HHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 347778888888776544421100 010 0 11234556788888876654310 1258899999999999864
Q ss_pred -ccCCCH-HHHHHHHHhcCccEEEeC
Q 040734 303 -GRLNNV-AEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 303 -~Tvn~~-~~~~~~~~~~GVdgI~TD 326 (361)
.+..+. ++...+. .+|+|.|..+
T Consensus 109 ~~~~~t~~~~~~~~~-~~g~d~v~~~ 133 (206)
T TIGR03128 109 LINVKDKVKRAKELK-ELGADYIGVH 133 (206)
T ss_pred ecCCCChHHHHHHHH-HcCCCEEEEc
Confidence 133333 4555664 5799988875
No 117
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=75.77 E-value=24 Score=32.87 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHCC---CCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc-cC---------------
Q 040734 224 FQPDAAVLIRKLQS---TYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV-FR--------------- 284 (361)
Q Consensus 224 f~~~~l~~l~~~~p---~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~-~~--------------- 284 (361)
-|.-+++..++..| +.|+..-..... |+ ..+...++-.+..|+.++. ++... ++
T Consensus 64 aN~iv~em~~eiLp~v~~tPViaGv~atD-P~-----~~~~~fl~~lk~~Gf~GV~-NfPTvgliDG~fR~~LEe~Gmgy 136 (268)
T PF09370_consen 64 ANEIVMEMAREILPVVKDTPVIAGVCATD-PF-----RDMDRFLDELKELGFSGVQ-NFPTVGLIDGQFRQNLEETGMGY 136 (268)
T ss_dssp HHHHHHHHHHHHGGG-SSS-EEEEE-TT--TT-------HHHHHHHHHHHT-SEEE-E-S-GGG--HHHHHHHHHTT--H
T ss_pred HhHHHHHHHHhhhhhccCCCEEEEecCcC-CC-----CcHHHHHHHHHHhCCceEE-ECCcceeeccHHHHHHHhcCCCH
Confidence 34555666666655 456655444321 12 2456667777888988875 22211 11
Q ss_pred --ChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 285 --NPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 285 --~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
.-++|+.+|++|+-..+| . -++++.++|. +.|+|.|+..-
T Consensus 137 ~~EVemi~~A~~~gl~T~~y-v-f~~e~A~~M~-~AGaDiiv~H~ 178 (268)
T PF09370_consen 137 DREVEMIRKAHEKGLFTTAY-V-FNEEQARAMA-EAGADIIVAHM 178 (268)
T ss_dssp HHHHHHHHHHHHTT-EE--E-E--SHHHHHHHH-HHT-SEEEEE-
T ss_pred HHHHHHHHHHHHCCCeeeee-e-cCHHHHHHHH-HcCCCEEEecC
Confidence 128999999999999999 4 4678888887 69999887654
No 118
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=75.37 E-value=69 Score=29.67 Aligned_cols=138 Identities=12% Similarity=-0.008 Sum_probs=84.8
Q ss_pred CHHHHHHhCCCCceEEEEEecCCccc-h--hhhHHHHHHHHHHHHHHHhcCCCCEEE------EcCCHHHHHHHHHHCCC
Q 040734 168 TLQEAFQQVDPNVGFNVELKFDDHIV-Y--EQDYLIRVIQAILKIVFEFAENRPIIF------STFQPDAAVLIRKLQST 238 (361)
Q Consensus 168 tL~EvL~~~~~~~~l~iEiK~~~~~~-~--~~~~~~~~v~~vl~~l~~~~~~~rv~~------~Sf~~~~l~~l~~~~p~ 238 (361)
.|.+.|. .+++.++-|+|..++.. . ...+. ..+.....+.|. .=+.+ ..-+.+.++.+++.. +
T Consensus 40 ~~~~~l~--~~~~~vIaeik~~sps~g~i~~~~~~----~~~A~~~~~~GA-~aisvlte~~~f~g~~~~l~~v~~~v-~ 111 (260)
T PRK00278 40 DFAAALR--AGKPAVIAEVKKASPSKGVIREDFDP----VEIAKAYEAGGA-ACLSVLTDERFFQGSLEYLRAARAAV-S 111 (260)
T ss_pred CHHHHHh--cCCCeEEEEeeCCCCCCCccCCCCCH----HHHHHHHHhCCC-eEEEEecccccCCCCHHHHHHHHHhc-C
Confidence 4566665 45689999999866531 0 01111 223333333332 11111 124688888888863 6
Q ss_pred CCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc--CChHHHHHHHHcCCEEEEeccCCCHHHHHHHHH
Q 040734 239 YPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF--RNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQH 316 (361)
Q Consensus 239 ~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~ 316 (361)
+|+..- |+-...+ -+..+...|++++.+....+- .-.++++.+++.|+.+.+- +++.+++.+..
T Consensus 112 iPvl~k---------dfi~~~~--qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lve--vh~~~E~~~A~- 177 (260)
T PRK00278 112 LPVLRK---------DFIIDPY--QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVE--VHDEEELERAL- 177 (260)
T ss_pred CCEEee---------eecCCHH--HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEE--eCCHHHHHHHH-
Confidence 787631 1111122 255677899999887765431 1247899999999999988 57777887776
Q ss_pred hcCccEEEeCC
Q 040734 317 LMGIDGVIVDL 327 (361)
Q Consensus 317 ~~GVdgI~TD~ 327 (361)
.+|+|-|..+.
T Consensus 178 ~~gadiIgin~ 188 (260)
T PRK00278 178 KLGAPLIGINN 188 (260)
T ss_pred HcCCCEEEECC
Confidence 68999887553
No 119
>PRK00208 thiG thiazole synthase; Reviewed
Probab=75.15 E-value=51 Score=30.40 Aligned_cols=134 Identities=18% Similarity=0.149 Sum_probs=81.6
Q ss_pred ccCHHHHHHhCC------CCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEE-EEcCCHHHHHHHHHHCCC
Q 040734 166 LCTLQEAFQQVD------PNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPII-FSTFQPDAAVLIRKLQST 238 (361)
Q Consensus 166 iptL~EvL~~~~------~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~-~~Sf~~~~l~~l~~~~p~ 238 (361)
--|-+|++.... ..-++-||+=.++.- ...+....+++.-.+++ .++ .++ +++-|+...+++...-|.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~--llpd~~~tv~aa~~L~~-~Gf--~vlpyc~~d~~~ak~l~~~G~~ 146 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKT--LLPDPIETLKAAEILVK-EGF--VVLPYCTDDPVLAKRLEEAGCA 146 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCC--CCcCHHHHHHHHHHHHH-CCC--EEEEEeCCCHHHHHHHHHcCCC
Confidence 446666665543 245778888765431 11223344444444332 233 355 778889998888887554
Q ss_pred CCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHh
Q 040734 239 YPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHL 317 (361)
Q Consensus 239 ~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~ 317 (361)
+- .-.+. -.| .... ..++++++.+++. ++.|++-+-+.++++..+++ +
T Consensus 147 ~v----mPlg~-------------------pIG-----sg~g--i~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Am-e 195 (250)
T PRK00208 147 AV----MPLGA-------------------PIG-----SGLG--LLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAM-E 195 (250)
T ss_pred Ee----CCCCc-------------------CCC-----CCCC--CCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHH-H
Confidence 32 10000 011 0111 2368889998884 88999988899999999997 6
Q ss_pred cCccEEEeCC-------hHHHHHHH
Q 040734 318 MGIDGVIVDL-------VQEITEAV 335 (361)
Q Consensus 318 ~GVdgI~TD~-------p~~~~~~l 335 (361)
+|+|||..+. |..+.+.+
T Consensus 196 lGAdgVlV~SAItka~dP~~ma~af 220 (250)
T PRK00208 196 LGADAVLLNTAIAVAGDPVAMARAF 220 (250)
T ss_pred cCCCEEEEChHhhCCCCHHHHHHHH
Confidence 9999998654 66554443
No 120
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.96 E-value=64 Score=29.04 Aligned_cols=109 Identities=17% Similarity=0.090 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhcCCC-CEEEEcCC-HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCc
Q 040734 203 IQAILKIVFEFAENR-PIIFSTFQ-PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVK 280 (361)
Q Consensus 203 v~~vl~~l~~~~~~~-rv~~~Sf~-~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~ 280 (361)
+..+.+.+.+-|..- -+.+.+-+ .+.++.+++.++.-|- ++...++. .+. +..+.+...|+..+..+.
T Consensus 27 a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~-~~vGaGTV-------~~~-~~~~~a~~aGA~FivsP~- 96 (213)
T PRK06552 27 ALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPE-VLIGAGTV-------LDA-VTARLAILAGAQFIVSPS- 96 (213)
T ss_pred HHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCC-eEEeeeeC-------CCH-HHHHHHHHcCCCEEECCC-
Confidence 445555665555421 12233322 3466677766643221 12222221 122 234567788998887553
Q ss_pred cccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 281 GVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 281 ~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
.++++++.++++|+.++.= +.++.++.... ++|+|.|-- +|
T Consensus 97 ---~~~~v~~~~~~~~i~~iPG--~~T~~E~~~A~-~~Gad~vkl-FP 137 (213)
T PRK06552 97 ---FNRETAKICNLYQIPYLPG--CMTVTEIVTAL-EAGSEIVKL-FP 137 (213)
T ss_pred ---CCHHHHHHHHHcCCCEECC--cCCHHHHHHHH-HcCCCEEEE-CC
Confidence 2899999999999988765 56888888886 699998876 44
No 121
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=74.94 E-value=33 Score=34.58 Aligned_cols=89 Identities=15% Similarity=0.191 Sum_probs=58.9
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCC-------cccc-----C----ChHHH
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEV-------KGVF-----R----NPGAV 289 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~-------~~~~-----~----~~~~v 289 (361)
.+.++++++.+|+++++.-.- .+.+ ....+...|++++.+.. .... . -.+..
T Consensus 253 ~~~i~~i~~~~~~~~vi~G~v-----------~t~~-~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~ 320 (450)
T TIGR01302 253 IDSIKEIKKTYPDLDIIAGNV-----------ATAE-QAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVA 320 (450)
T ss_pred HHHHHHHHHhCCCCCEEEEeC-----------CCHH-HHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHH
Confidence 356778888888888765221 1223 33445578888873221 1000 0 13455
Q ss_pred HHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 290 TKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 290 ~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
+.+++.|+.|++-|-+.++.++.+++ .+|++.|+.-.
T Consensus 321 ~~~~~~~vpviadGGi~~~~di~kAl-a~GA~~V~~G~ 357 (450)
T TIGR01302 321 EYAAQSGIPVIADGGIRYSGDIVKAL-AAGADAVMLGS 357 (450)
T ss_pred HHHhhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEECc
Confidence 55677899999988899999999997 69999998765
No 122
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=74.53 E-value=34 Score=30.02 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHCCCCCE-EEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEe
Q 040734 224 FQPDAAVLIRKLQSTYPV-FFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTY 302 (361)
Q Consensus 224 f~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w 302 (361)
+..+.++.+++. ++.++ ..++.. ...+.++.+...|++++.++....-.....++.+++.|+.+..-
T Consensus 43 ~~~~~v~~i~~~-~~~~v~v~lm~~-----------~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~ 110 (210)
T TIGR01163 43 FGPPVLEALRKY-TDLPIDVHLMVE-----------NPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIV 110 (210)
T ss_pred cCHHHHHHHHhc-CCCcEEEEeeeC-----------CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEE
Confidence 667788888764 45554 212211 12344566678899997776542212357778888999776432
Q ss_pred ccCCCHHHHHHHHHhcCccEEEe
Q 040734 303 GRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 303 ~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
.+.+++.+..+.+ ..++|.|..
T Consensus 111 ~~~~t~~e~~~~~-~~~~d~i~~ 132 (210)
T TIGR01163 111 LNPATPLEFLEYV-LPDVDLVLL 132 (210)
T ss_pred ECCCCCHHHHHHH-HhhCCEEEE
Confidence 1455544433332 257787655
No 123
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=72.93 E-value=94 Score=30.10 Aligned_cols=143 Identities=10% Similarity=-0.019 Sum_probs=84.6
Q ss_pred CHHHHHHhCC---CCceEEEEEecCCccchhhhHHH-HHHHHHHHHHHHhcC------CCCEEEEcCCHHHHHHHHHHCC
Q 040734 168 TLQEAFQQVD---PNVGFNVELKFDDHIVYEQDYLI-RVIQAILKIVFEFAE------NRPIIFSTFQPDAAVLIRKLQS 237 (361)
Q Consensus 168 tL~EvL~~~~---~~~~l~iEiK~~~~~~~~~~~~~-~~v~~vl~~l~~~~~------~~rv~~~Sf~~~~l~~l~~~~p 237 (361)
.|..+|.... .+..++-|+|..++.. +.... .-...+.+...+.|. .++-+|+ -+.+.|+.+|+..-
T Consensus 104 ~f~~aL~~~~~~~g~~~vIAEvKrASPSk--G~I~~~~dp~~iA~~Ye~~GA~aISVLTd~~~F~-Gs~e~L~~vr~~~v 180 (338)
T PLN02460 104 DFVGALRAAHKRTGQPGLIAEVKKASPSR--GVLRENFDPVEIAQAYEKGGAACLSVLTDEKYFQ-GSFENLEAIRNAGV 180 (338)
T ss_pred CHHHHHHhhccccCCcceEeeeccCCCCC--CccCCCCCHHHHHHHHHhCCCcEEEEecCcCcCC-CCHHHHHHHHHcCC
Confidence 4666665421 2378999999876541 10000 001233444444442 2333332 36788888888634
Q ss_pred CCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc--CChHHHHHHHHcCCEEEEeccCCCHHHHHHHH
Q 040734 238 TYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF--RNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQ 315 (361)
Q Consensus 238 ~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~ 315 (361)
++|+..- |+--. ..-+..++.+|++.+.+-...+- .-.++++.+++.|+.+.+= |++.+++++.+
T Consensus 181 ~lPvLrK---------DFIID--~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVE--VH~~~ElerAl 247 (338)
T PLN02460 181 KCPLLCK---------EFIVD--AWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIE--VHDEREMDRVL 247 (338)
T ss_pred CCCEeec---------cccCC--HHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEE--eCCHHHHHHHH
Confidence 6776531 11101 11245577888887755444331 1248899999999999997 79999999987
Q ss_pred Hhc-CccEEEeCC
Q 040734 316 HLM-GIDGVIVDL 327 (361)
Q Consensus 316 ~~~-GVdgI~TD~ 327 (361)
.. |++-|-.|+
T Consensus 248 -~~~ga~iIGINN 259 (338)
T PLN02460 248 -GIEGVELIGINN 259 (338)
T ss_pred -hcCCCCEEEEeC
Confidence 56 888776665
No 124
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=72.77 E-value=35 Score=34.74 Aligned_cols=89 Identities=17% Similarity=0.123 Sum_probs=60.6
Q ss_pred HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEE--------cCCccc------cCC--hHHHH
Q 040734 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIV--------SEVKGV------FRN--PGAVT 290 (361)
Q Consensus 227 ~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~--------~~~~~~------~~~--~~~v~ 290 (361)
+.++++++.+|++|+..-+. .+.+ ....+...|++++- +..... ..+ -+..+
T Consensus 255 ~~i~~i~~~~~~~~vi~g~~-----------~t~~-~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~ 322 (475)
T TIGR01303 255 SAIKAVRALDLGVPIVAGNV-----------VSAE-GVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAA 322 (475)
T ss_pred HHHHHHHHHCCCCeEEEecc-----------CCHH-HHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHH
Confidence 57888888889888765211 1233 33445578888876 322211 001 15556
Q ss_pred HHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 291 KIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 291 ~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
.+++.|+.|++-|-++++.++.+.+ .+|.+.|+....
T Consensus 323 ~~~~~~~~viadGgi~~~~di~kal-a~GA~~vm~g~~ 359 (475)
T TIGR01303 323 EARKLGGHVWADGGVRHPRDVALAL-AAGASNVMVGSW 359 (475)
T ss_pred HHHHcCCcEEEeCCCCCHHHHHHHH-HcCCCEEeechh
Confidence 6688899999999999999999997 699999987653
No 125
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=71.74 E-value=18 Score=34.78 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=37.6
Q ss_pred HHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 267 CLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 267 ~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
+.+.++..+...... ..+++++.+|+.|+.|+. ++.+..+..++. +.|+|+|+.-
T Consensus 109 ~~~~~~~~v~~~~G~--p~~~~i~~l~~~gi~v~~--~v~s~~~A~~a~-~~G~D~iv~q 163 (330)
T PF03060_consen 109 ALEAKPDVVSFGFGL--PPPEVIERLHAAGIKVIP--QVTSVREARKAA-KAGADAIVAQ 163 (330)
T ss_dssp HHHS--SEEEEESSS--C-HHHHHHHHHTT-EEEE--EESSHHHHHHHH-HTT-SEEEEE
T ss_pred ccccceEEEEeeccc--chHHHHHHHHHcCCcccc--ccCCHHHHHHhh-hcCCCEEEEe
Confidence 334456667665553 257999999999987765 588999998886 6999999853
No 126
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=70.73 E-value=36 Score=31.15 Aligned_cols=84 Identities=17% Similarity=0.130 Sum_probs=43.5
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccC
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRL 305 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tv 305 (361)
.+.++.+|+.. ++|+.++..... +....++..++.+.+.|+.++.++--..--..++++.++++|+.....-+.
T Consensus 65 ~~~~~~vr~~~-~~pv~lm~y~n~-----~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P 138 (242)
T cd04724 65 LELVKEIRKKN-TIPIVLMGYYNP-----ILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAP 138 (242)
T ss_pred HHHHHHHhhcC-CCCEEEEEecCH-----HHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 44555555543 455544332111 011124555666777888887763111001347788888889877654244
Q ss_pred CCH-HHHHHHH
Q 040734 306 NNV-AEAVYMQ 315 (361)
Q Consensus 306 n~~-~~~~~~~ 315 (361)
+++ +.++.+.
T Consensus 139 ~T~~~~i~~i~ 149 (242)
T cd04724 139 TTPDERIKKIA 149 (242)
T ss_pred CCCHHHHHHHH
Confidence 543 3344443
No 127
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=70.08 E-value=21 Score=32.85 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=33.3
Q ss_pred hHHHHHHHHc---CCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 286 PGAVTKIKES---KLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 286 ~~~v~~~~~~---Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
.+.++.++.. |+.|+.| +.+|+...+++. ++|++.|+.
T Consensus 110 ~~tv~aa~~L~~~Gf~vlpy-c~dd~~~ar~l~-~~G~~~vmP 150 (248)
T cd04728 110 IETLKAAEILVKEGFTVLPY-CTDDPVLAKRLE-DAGCAAVMP 150 (248)
T ss_pred HHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHH-HcCCCEeCC
Confidence 4777888888 9999999 899999998886 799999988
No 128
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=69.12 E-value=79 Score=29.84 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc
Q 040734 204 QAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF 283 (361)
Q Consensus 204 ~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 283 (361)
..+.....+.+. -..++|......+.+++..| -|.+.-..... + .....+.++.+...++.++.++.....
T Consensus 84 ~~la~aa~~~g~--~~~~~~~~~~~~~~i~~~~~-~~~~~ql~~~~----~--~~~~~~~i~~~~~~g~~~i~l~~~~p~ 154 (299)
T cd02809 84 LATARAAAAAGI--PFTLSTVSTTSLEEVAAAAP-GPRWFQLYVPR----D--REITEDLLRRAEAAGYKALVLTVDTPV 154 (299)
T ss_pred HHHHHHHHHcCC--CEEecCCCcCCHHHHHHhcC-CCeEEEEeecC----C--HHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 345555556654 24455544445556666555 33332211110 1 112445566667788888776655320
Q ss_pred ----CChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 284 ----RNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 284 ----~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
...+.+++++++ +++|.+= .+.+.++...+. +.|+|+|+.
T Consensus 155 ~~~~~~~~~i~~l~~~~~~pvivK-~v~s~~~a~~a~-~~G~d~I~v 199 (299)
T cd02809 155 LGRRLTWDDLAWLRSQWKGPLILK-GILTPEDALRAV-DAGADGIVV 199 (299)
T ss_pred CCCCCCHHHHHHHHHhcCCCEEEe-ecCCHHHHHHHH-HCCCCEEEE
Confidence 113788999887 7888887 678888887776 799999976
No 129
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=69.03 E-value=83 Score=27.85 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc---cCChHHHHHHHHcCCEEEE
Q 040734 225 QPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV---FRNPGAVTKIKESKLSLLT 301 (361)
Q Consensus 225 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~v~~~~~~Gl~v~~ 301 (361)
..+.++.+|+.. ++|+.=++........-.-+-+++++...+ ..|++.+.++...- ....++++++|+++..+++
T Consensus 20 ~~~dI~aik~~v-~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~-~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MA 97 (192)
T PF04131_consen 20 GVEDIRAIKKAV-DLPIIGIIKRDYPDSDVYITPTLKEVDALA-EAGADIIALDATDRPRPETLEELIREIKEKYQLVMA 97 (192)
T ss_dssp SHHHHHHHHTTB--S-EEEE-B-SBTTSS--BS-SHHHHHHHH-HCT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEE
T ss_pred CHHHHHHHHHhc-CCCEEEEEeccCCCCCeEECCCHHHHHHHH-HcCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEee
Confidence 577788888875 799876665432111111134577766666 68898888776432 1135899999999977777
Q ss_pred eccCCCHHHHHHHHHhcCccEEEe
Q 040734 302 YGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 302 w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
- +.+.++..... .+|+|.|-|
T Consensus 98 D--ist~ee~~~A~-~~G~D~I~T 118 (192)
T PF04131_consen 98 D--ISTLEEAINAA-ELGFDIIGT 118 (192)
T ss_dssp E---SSHHHHHHHH-HTT-SEEE-
T ss_pred e--cCCHHHHHHHH-HcCCCEEEc
Confidence 6 68888888886 699998876
No 130
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=68.82 E-value=86 Score=27.96 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=78.3
Q ss_pred HHHhCCCCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCcc
Q 040734 172 AFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEI 251 (361)
Q Consensus 172 vL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~ 251 (361)
+++.++.++.+....-...+... ...+..+.+...+.|. ..++.-+++.++.+++. .++|+..++......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~a~~~~~~G~---~~~~~~~~~~~~~i~~~-~~iPil~~~~~~~~~ 73 (219)
T cd04729 3 LLEQLKGGLIVSCQALPGEPLHS-----PEIMAAMALAAVQGGA---VGIRANGVEDIRAIRAR-VDLPIIGLIKRDYPD 73 (219)
T ss_pred HHHHhcCCeEEEccCCCCCCcCc-----HHHHHHHHHHHHHCCC---eEEEcCCHHHHHHHHHh-CCCCEEEEEecCCCC
Confidence 35566655544444332222211 1234455555555554 22333456788888876 688886433211100
Q ss_pred ccccc-cccHHHHHHHHHhcCCcEEEcCCcccc-----CChHHHHHHHHcC-CEEEEeccCCCHHHHHHHHHhcCccEEE
Q 040734 252 FYDVR-RNSLEEAVKVCLEGGLQGIVSEVKGVF-----RNPGAVTKIKESK-LSLLTYGRLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 252 ~~d~~-~~~l~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~v~~~~~~G-l~v~~w~Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
.+.. .... +.++.+...|++.+.+...... ...++++.+++.| +.+.+ .+.+++++..+. .+|+|.|.
T Consensus 74 -~~~~ig~~~-~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~-~~G~d~i~ 148 (219)
T cd04729 74 -SEVYITPTI-EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA--DISTLEEALNAA-KLGFDIIG 148 (219)
T ss_pred -CCceeCCCH-HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHH-HcCCCEEE
Confidence 0000 0112 2446677889988877543210 2357899999999 65544 477888887775 69999986
Q ss_pred eC
Q 040734 325 VD 326 (361)
Q Consensus 325 TD 326 (361)
+.
T Consensus 149 ~~ 150 (219)
T cd04729 149 TT 150 (219)
T ss_pred cc
Confidence 53
No 131
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=68.70 E-value=74 Score=28.40 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=31.4
Q ss_pred hHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 286 PGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 286 ~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
..+++.+++. ++.|++=|-+.+++++.+++ .+|+|||+.-
T Consensus 162 ~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l-~~GadgV~iG 202 (221)
T PRK01130 162 FALLKELLKAVGCPVIAEGRINTPEQAKKAL-ELGAHAVVVG 202 (221)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHH-HCCCCEEEEc
Confidence 4667777665 77887765799999999987 6999999864
No 132
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=68.62 E-value=94 Score=28.83 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=70.9
Q ss_pred CcccCHHHHHHhCC-----CCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC---HHHHHHHHHH
Q 040734 164 DSLCTLQEAFQQVD-----PNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQ---PDAAVLIRKL 235 (361)
Q Consensus 164 ~~iptL~EvL~~~~-----~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~---~~~l~~l~~~ 235 (361)
.+=+-++|-|+++. -++.+.-|+=.+. -++.+.+. .+=+.+..|+ .+.|+++.+.
T Consensus 53 FqG~G~eeGL~iL~~vk~~~glpvvTeV~~~~-----------~~~~vae~------vDilQIgArn~rn~~LL~a~g~t 115 (258)
T TIGR01362 53 FRGPGLEEGLKILQKVKEEFGVPILTDVHESS-----------QCEPVAEV------VDIIQIPAFLCRQTDLLVAAAKT 115 (258)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCceEEEeCCHH-----------HHHHHHhh------CcEEEeCchhcchHHHHHHHhcc
Confidence 33455666676664 2688888887653 23333322 2335566654 5555555553
Q ss_pred CCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEE-------cCCccccCChHHHHHHHHcCCEEEEeccCCC-
Q 040734 236 QSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIV-------SEVKGVFRNPGAVTKIKESKLSLLTYGRLNN- 307 (361)
Q Consensus 236 ~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~-------~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~- 307 (361)
+-|+. +-.+..... ..+..+.++....|..-+. ..+..+..+-..+-.+|+.|++|++- .-..
T Consensus 116 --~kpV~-lKrG~~~t~-----~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~k~~~~PVi~D-pSHsv 186 (258)
T TIGR01362 116 --GRIVN-VKKGQFLSP-----WDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMRELGCPVIFD-ATHSV 186 (258)
T ss_pred --CCeEE-ecCCCcCCH-----HHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEe-CCccc
Confidence 33432 222211000 1233455565555543222 22333333446677788889999887 3332
Q ss_pred ----------------HHHHHHHHHhcCccEEEeC
Q 040734 308 ----------------VAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 308 ----------------~~~~~~~~~~~GVdgI~TD 326 (361)
...+.+.....|+||+|..
T Consensus 187 q~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iE 221 (258)
T TIGR01362 187 QQPGGLGGASGGLREFVPTLARAAVAVGIDGLFME 221 (258)
T ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 2233333336899999964
No 133
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=68.13 E-value=30 Score=32.96 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
..+.++.+.+.++..+...... ..++++.+|++|+.|++ ++.+.++..++. +.|+|+|+.
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~---p~~~i~~lk~~g~~v~~--~v~s~~~a~~a~-~~GaD~Ivv 135 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGN---PGKYIPRLKENGVKVIP--VVASVALAKRME-KAGADAVIA 135 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCC---cHHHHHHHHHcCCEEEE--EcCCHHHHHHHH-HcCCCEEEE
Confidence 3455566667788877765432 34699999999998874 477888887775 699999985
No 134
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=68.10 E-value=42 Score=33.33 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=57.6
Q ss_pred HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc--------c--cCCh------HHHH
Q 040734 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG--------V--FRNP------GAVT 290 (361)
Q Consensus 227 ~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~--------~--~~~~------~~v~ 290 (361)
+.++++++.+|+.++..-.- .+.+.+. .+...|+++|...+.- + .-.| ...+
T Consensus 183 ~~v~~ik~~~p~~~vi~g~V-----------~T~e~a~-~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~ 250 (404)
T PRK06843 183 ELVKKIKTKYPNLDLIAGNI-----------VTKEAAL-DLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYE 250 (404)
T ss_pred HHHHHHHhhCCCCcEEEEec-----------CCHHHHH-HHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHH
Confidence 56788888888877543111 1234333 4446788887543310 0 0012 2233
Q ss_pred HHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChH
Q 040734 291 KIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQ 329 (361)
Q Consensus 291 ~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~ 329 (361)
.+++.++.|++-|-+.++.++.+++ .+|.++|+--.+-
T Consensus 251 ~~~~~~vpVIAdGGI~~~~Di~KAL-alGA~aVmvGs~~ 288 (404)
T PRK06843 251 VCKNTNICIIADGGIRFSGDVVKAI-AAGADSVMIGNLF 288 (404)
T ss_pred HHhhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEccee
Confidence 3456689999998899999999997 6999999976653
No 135
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=67.10 E-value=27 Score=30.28 Aligned_cols=77 Identities=13% Similarity=0.294 Sum_probs=54.1
Q ss_pred HHHHhcCCcEEEcCCcccc-------CCh---HHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeC---ChHHH
Q 040734 265 KVCLEGGLQGIVSEVKGVF-------RNP---GAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD---LVQEI 331 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~-------~~~---~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD---~p~~~ 331 (361)
+..+..|+.++.++....+ .+| +.+..++++|+++++- .=|++....+....+||++|--- .+..+
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vv-SNn~e~RV~~~~~~l~v~fi~~A~KP~~~~f 99 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVV-SNNKESRVARAAEKLGVPFIYRAKKPFGRAF 99 (175)
T ss_pred HHHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEE-eCCCHHHHHhhhhhcCCceeecccCccHHHH
Confidence 3456788888877765422 233 6677889999999988 56777777777667999998753 45566
Q ss_pred HHHHHHhcCCc
Q 040734 332 TEAVYDMIKPA 342 (361)
Q Consensus 332 ~~~l~~~~~~~ 342 (361)
.+++++..-+.
T Consensus 100 r~Al~~m~l~~ 110 (175)
T COG2179 100 RRALKEMNLPP 110 (175)
T ss_pred HHHHHHcCCCh
Confidence 77777665443
No 136
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=66.66 E-value=94 Score=27.60 Aligned_cols=128 Identities=13% Similarity=0.008 Sum_probs=75.9
Q ss_pred CceEEEEEecCCccch---hhhHHHHHHHHHHHHHHHhcCCCCEEEE----c--CCHHHHHHHHHHCCCCCEEEEccCCC
Q 040734 179 NVGFNVELKFDDHIVY---EQDYLIRVIQAILKIVFEFAENRPIIFS----T--FQPDAAVLIRKLQSTYPVFFLTNGGT 249 (361)
Q Consensus 179 ~~~l~iEiK~~~~~~~---~~~~~~~~v~~vl~~l~~~~~~~rv~~~----S--f~~~~l~~l~~~~p~~~~~~l~~~~~ 249 (361)
+..++.|+|..++..- ...+... +.+...+.|. ..+-+. . -+.+.++.+++. .++|+..-...
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~----~A~~~~~~GA-~~l~v~~~~~~~~g~~~~~~~i~~~-v~iPi~~~~~i-- 81 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVE----IAKAYEKAGA-AAISVLTEPKYFQGSLEDLRAVREA-VSLPVLRKDFI-- 81 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHH----HHHHHHHcCC-CEEEEEeCccccCCCHHHHHHHHHh-cCCCEEECCee--
Confidence 5899999998765421 0111122 2333333332 222222 1 367788888886 47887642110
Q ss_pred ccccccccccHHHHHHHHHhcCCcEEEcCCcccc--CChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 250 EIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF--RNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 250 ~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
+ -...++.+...|++++++....+. ...++++.++..|+.+.+- +.+.+++.++. .+|++.|.+.
T Consensus 82 ------~---~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~--v~~~~e~~~~~-~~g~~~i~~t 148 (217)
T cd00331 82 ------I---DPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVE--VHDEEELERAL-ALGAKIIGIN 148 (217)
T ss_pred ------c---CHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEE--ECCHHHHHHHH-HcCCCEEEEe
Confidence 0 112356677899999986544321 1246667778899988655 56778888876 6999988543
No 137
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.35 E-value=1e+02 Score=27.94 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=49.3
Q ss_pred HHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH--HHHHHHhcCC
Q 040734 264 VKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI--TEAVYDMIKP 341 (361)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~--~~~l~~~~~~ 341 (361)
.+.+...|+..+..+. .++++++.++++|+.++.= +-++.|+...+ ++|++.|-- +|... ..|++.+..|
T Consensus 84 a~~a~~aGA~FiVsP~----~~~~v~~~~~~~~i~~iPG--~~TpsEi~~A~-~~Ga~~vKl-FPA~~~G~~~ikal~~p 155 (222)
T PRK07114 84 AALYIQLGANFIVTPL----FNPDIAKVCNRRKVPYSPG--CGSLSEIGYAE-ELGCEIVKL-FPGSVYGPGFVKAIKGP 155 (222)
T ss_pred HHHHHHcCCCEEECCC----CCHHHHHHHHHcCCCEeCC--CCCHHHHHHHH-HCCCCEEEE-CcccccCHHHHHHHhcc
Confidence 4556788998887653 2899999999999988765 56788888886 699886543 44322 4566655443
No 138
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=65.50 E-value=1.1e+02 Score=28.39 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=72.1
Q ss_pred CcccCHHHHHHhCC-----CCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC---HHHHHHHHHH
Q 040734 164 DSLCTLQEAFQQVD-----PNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQ---PDAAVLIRKL 235 (361)
Q Consensus 164 ~~iptL~EvL~~~~-----~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~---~~~l~~l~~~ 235 (361)
.+=|-++|=|+++. -++.+.-|+=.+. -++.+.+. .+=+.+..|+ .+.|+++.+.
T Consensus 61 FqG~G~eeGL~~L~~vk~~~GlpvvTeV~~~~-----------~~~~v~~~------~DilQIgArn~rn~~LL~a~g~t 123 (264)
T PRK05198 61 FRGPGLEEGLKILQEVKETFGVPVLTDVHEPE-----------QAAPVAEV------VDVLQIPAFLCRQTDLLVAAAKT 123 (264)
T ss_pred CCCCChHHHHHHHHHHHHHHCCceEEEeCCHH-----------HHHHHHhh------CcEEEECchhcchHHHHHHHhcc
Confidence 34466677777765 2688888887653 23333332 2335566654 5666666554
Q ss_pred CCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEE-------EcCCccccCChHHHHHHHHcCCEEEEeccCCC-
Q 040734 236 QSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGI-------VSEVKGVFRNPGAVTKIKESKLSLLTYGRLNN- 307 (361)
Q Consensus 236 ~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i-------~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~- 307 (361)
+.|+. +-.+..... ..+..+.++....|..-+ ...++.+..+-..+-.+++.+++|++- .-+.
T Consensus 124 --~kpV~-lKrG~~~t~-----~e~~~aaeyi~~~Gn~~vilcERG~tf~y~r~~~D~~~vp~~k~~~lPVi~D-pSHsv 194 (264)
T PRK05198 124 --GKVVN-IKKGQFLAP-----WDMKNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRGLPIMRETGAPVIFD-ATHSV 194 (264)
T ss_pred --CCeEE-ecCCCcCCH-----HHHHHHHHHHHHcCCCeEEEEeCCCCcCCCCeeechhhhHHHhhCCCCEEEe-CCccc
Confidence 33442 222211101 123344555555554322 222333334556677888999999887 3332
Q ss_pred ----------------HHHHHHHHHhcCccEEEeC
Q 040734 308 ----------------VAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 308 ----------------~~~~~~~~~~~GVdgI~TD 326 (361)
...+.+.....|+||+|..
T Consensus 195 q~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iE 229 (264)
T PRK05198 195 QLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIE 229 (264)
T ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 2233333336899999963
No 139
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=65.14 E-value=50 Score=29.95 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=51.2
Q ss_pred cCCHHHHHHHHHHCCCCCE-EEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccC-ChHHHHHHHHcCCEEE
Q 040734 223 TFQPDAAVLIRKLQSTYPV-FFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFR-NPGAVTKIKESKLSLL 300 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~-~~~~v~~~~~~Gl~v~ 300 (361)
+|.+..++++++..|+.++ ..+.- ......++.+.+.|++.+.++...... -.+.++.++++|+.+.
T Consensus 50 ~~G~~~v~~lr~~~~~~~lDvHLm~-----------~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~g 118 (228)
T PTZ00170 50 SFGPPVVKSLRKHLPNTFLDCHLMV-----------SNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVG 118 (228)
T ss_pred CcCHHHHHHHHhcCCCCCEEEEECC-----------CCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEE
Confidence 6889999999998877764 22221 123344455667888888877664211 2477888999998875
Q ss_pred E-eccCCCHHHHHHHH
Q 040734 301 T-YGRLNNVAEAVYMQ 315 (361)
Q Consensus 301 ~-w~Tvn~~~~~~~~~ 315 (361)
+ ..+--+.+++.+++
T Consensus 119 val~p~t~~e~l~~~l 134 (228)
T PTZ00170 119 VAIKPKTPVEVLFPLI 134 (228)
T ss_pred EEECCCCCHHHHHHHH
Confidence 4 21323445554443
No 140
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=65.09 E-value=87 Score=30.00 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCcEEEcCCccc------cCChHHHHHHHH-cCCEEEEeccCCCHHHHHHHHHhcCccEEEeC-----C
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGV------FRNPGAVTKIKE-SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD-----L 327 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~------~~~~~~v~~~~~-~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD-----~ 327 (361)
..+..+.+.+.|++.+.++.... ..+-+.+.++++ .+++|+.-|-+.+.+++.+++...|+|||+.- +
T Consensus 151 ~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~n 230 (321)
T PRK10415 151 CVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGR 230 (321)
T ss_pred HHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcC
Confidence 33445556677888776654321 012356666655 57899988889999999998754799999987 5
Q ss_pred hHHHHHHHH
Q 040734 328 VQEITEAVY 336 (361)
Q Consensus 328 p~~~~~~l~ 336 (361)
|..+.+..+
T Consensus 231 P~if~~~~~ 239 (321)
T PRK10415 231 PWIFREIQH 239 (321)
T ss_pred ChHHHHHHH
Confidence 666655544
No 141
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=64.58 E-value=99 Score=29.81 Aligned_cols=90 Identities=11% Similarity=0.155 Sum_probs=51.9
Q ss_pred HHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCE--EEEecc-C
Q 040734 229 AVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLS--LLTYGR-L 305 (361)
Q Consensus 229 l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~--v~~w~T-v 305 (361)
++.+++..|+....+..... ......+...+.|+ ++.+ .+..-++.+++.|.. ..+++. +
T Consensus 16 ~~~~~~~~~~~~~~~avKAN----------~~~~v~~~l~~~G~-g~~v------aS~~E~~~~~~~G~~~~~i~~~~~~ 78 (362)
T cd00622 16 YRRWKKALPRVRPFYAVKCN----------PDPAVLRTLAALGA-GFDC------ASKGEIELVLGLGVSPERIIFANPC 78 (362)
T ss_pred HHHHHHHCCCCeEEEEeccC----------CCHHHHHHHHHcCC-CeEe------cCHHHHHHHHHcCCCcceEEEcCCC
Confidence 34455555554444443332 23445555556665 4322 255556777777765 455511 4
Q ss_pred CCHHHHHHHHHhcCccEEEeCChHHHHHHHH
Q 040734 306 NNVAEAVYMQHLMGIDGVIVDLVQEITEAVY 336 (361)
Q Consensus 306 n~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~ 336 (361)
.+.++++.++ +.|+.-++.|..+.+..+.+
T Consensus 79 k~~~~l~~a~-~~gi~~~~~ds~~el~~l~~ 108 (362)
T cd00622 79 KSISDIRYAA-ELGVRLFTFDSEDELEKIAK 108 (362)
T ss_pred CCHHHHHHHH-HcCCCEEEECCHHHHHHHHH
Confidence 4677777776 57887677788888876654
No 142
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=63.78 E-value=84 Score=28.39 Aligned_cols=83 Identities=16% Similarity=0.085 Sum_probs=50.8
Q ss_pred EcCCHHHHHHHHHHCCCCCE-EEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEE
Q 040734 222 STFQPDAAVLIRKLQSTYPV-FFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLL 300 (361)
Q Consensus 222 ~Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~ 300 (361)
.+|.+..++.+|+..++.|. ..|.-.. ....++...+.|++.+..++....-..+.++.+|++|+++.
T Consensus 42 ~tfg~~~i~~i~~~~~~~~~dvHLMv~~-----------p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~G 110 (220)
T PRK08883 42 LTFGAPICKALRDYGITAPIDVHLMVKP-----------VDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAG 110 (220)
T ss_pred cccCHHHHHHHHHhCCCCCEEEEeccCC-----------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEE
Confidence 37899999999986445553 2222111 22333344567888888887742223488899999999986
Q ss_pred EeccCCCHHH-HHHHH
Q 040734 301 TYGRLNNVAE-AVYMQ 315 (361)
Q Consensus 301 ~w~Tvn~~~~-~~~~~ 315 (361)
+--..+++-+ +.+++
T Consensus 111 lalnP~Tp~~~i~~~l 126 (220)
T PRK08883 111 VVLNPATPLHHLEYIM 126 (220)
T ss_pred EEeCCCCCHHHHHHHH
Confidence 5423444433 44444
No 143
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=63.56 E-value=36 Score=34.80 Aligned_cols=90 Identities=11% Similarity=0.116 Sum_probs=60.1
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCC-------cc---------ccCChHHH
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEV-------KG---------VFRNPGAV 289 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~-------~~---------~~~~~~~v 289 (361)
.+.++++++..|+++++.-.- .+.+ ....+...|++++.+.. .. +....+..
T Consensus 270 ~~~i~~ik~~~~~~~v~aG~V-----------~t~~-~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~ 337 (495)
T PTZ00314 270 IDMIKKLKSNYPHVDIIAGNV-----------VTAD-QAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVA 337 (495)
T ss_pred HHHHHHHHhhCCCceEEECCc-----------CCHH-HHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHH
Confidence 467888888888777654110 1222 33455678988874321 00 00002455
Q ss_pred HHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 290 TKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 290 ~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
+.+++.|+.+++-|-+.++.++.+++ .+|.|+|+--..
T Consensus 338 ~~~~~~~v~vIadGGi~~~~di~kAl-a~GA~~Vm~G~~ 375 (495)
T PTZ00314 338 RYARERGVPCIADGGIKNSGDICKAL-ALGADCVMLGSL 375 (495)
T ss_pred HHHhhcCCeEEecCCCCCHHHHHHHH-HcCCCEEEECch
Confidence 67788899999987889999999987 699999997765
No 144
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=63.42 E-value=1.4e+02 Score=28.42 Aligned_cols=105 Identities=13% Similarity=0.197 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCCEEEEcCC--HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCc--
Q 040734 205 AILKIVFEFAENRPIIFSTFQ--PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVK-- 280 (361)
Q Consensus 205 ~vl~~l~~~~~~~rv~~~Sf~--~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~-- 280 (361)
..++.+.+++. +++..+|. .+.++++++. ++.+.... .+++++ ..+.+.|++++.+...
T Consensus 78 ~~~~~~~~~~v--~~v~~~~g~p~~~i~~lk~~--g~~v~~~v------------~s~~~a-~~a~~~GaD~Ivv~g~ea 140 (307)
T TIGR03151 78 ELVDLVIEEKV--PVVTTGAGNPGKYIPRLKEN--GVKVIPVV------------ASVALA-KRMEKAGADAVIAEGMES 140 (307)
T ss_pred HHHHHHHhCCC--CEEEEcCCCcHHHHHHHHHc--CCEEEEEc------------CCHHHH-HHHHHcCCCEEEEECccc
Confidence 34454444543 45555553 2366777765 44443322 123333 4455778888765321
Q ss_pred ----cccCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 281 ----GVFRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 281 ----~~~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
....+-.++..+++. +++|++-|-+.+..++..++ .+|+|||+...
T Consensus 141 gGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al-~~GA~gV~iGt 191 (307)
T TIGR03151 141 GGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAF-ALGAEAVQMGT 191 (307)
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH-HcCCCEeecch
Confidence 111134666666555 68999998899999998887 59999998765
No 145
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=63.38 E-value=41 Score=34.26 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=57.8
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc-----c-cC----------ChHHH
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG-----V-FR----------NPGAV 289 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~-----~-~~----------~~~~v 289 (361)
.+.++++|+.+|++++..-.- .+.+.+. .+...|++++-+.... . .. -.+..
T Consensus 256 ~~~i~~ik~~~p~~~v~agnv-----------~t~~~a~-~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~ 323 (479)
T PRK07807 256 LEALRAVRALDPGVPIVAGNV-----------VTAEGTR-DLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECA 323 (479)
T ss_pred HHHHHHHHHHCCCCeEEeecc-----------CCHHHHH-HHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHH
Confidence 467888888888876654111 1233333 3446788877521110 0 00 12444
Q ss_pred HHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 290 TKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 290 ~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
+.+++.|++|++-|-+.++.++.+.+ .+|+++++...
T Consensus 324 ~~~~~~~~~via~ggi~~~~~~~~al-~~ga~~v~~g~ 360 (479)
T PRK07807 324 AAARELGAHVWADGGVRHPRDVALAL-AAGASNVMIGS 360 (479)
T ss_pred HHHHhcCCcEEecCCCCCHHHHHHHH-HcCCCeeeccH
Confidence 55567799999998999999999997 69999998764
No 146
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=63.32 E-value=49 Score=31.82 Aligned_cols=89 Identities=13% Similarity=0.202 Sum_probs=56.6
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCc-------cc-----cC----ChHHH
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVK-------GV-----FR----NPGAV 289 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~-------~~-----~~----~~~~v 289 (361)
.+.++.+++..|++++..-.- .+.+.+ ..+.+.|++++..... .. .. -.+..
T Consensus 123 ~~~i~~ik~~~p~v~Vi~G~v-----------~t~~~A-~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~ 190 (325)
T cd00381 123 IEMIKFIKKKYPNVDVIAGNV-----------VTAEAA-RDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVA 190 (325)
T ss_pred HHHHHHHHHHCCCceEEECCC-----------CCHHHH-HHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHH
Confidence 456777888777666654111 123333 3445788888764210 00 00 02444
Q ss_pred HHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 290 TKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 290 ~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
+.+++.+++|++-|-+.+..++.+++ .+|.|+|+--.
T Consensus 191 ~~~~~~~vpVIA~GGI~~~~di~kAl-a~GA~~VmiGt 227 (325)
T cd00381 191 AAARDYGVPVIADGGIRTSGDIVKAL-AAGADAVMLGS 227 (325)
T ss_pred HHHhhcCCcEEecCCCCCHHHHHHHH-HcCCCEEEecc
Confidence 55666789999988899999999987 69999999843
No 147
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=63.15 E-value=91 Score=29.95 Aligned_cols=104 Identities=14% Similarity=0.191 Sum_probs=67.1
Q ss_pred HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc------CChHHHHHHHHc-C-CE
Q 040734 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF------RNPGAVTKIKES-K-LS 298 (361)
Q Consensus 227 ~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~------~~~~~v~~~~~~-G-l~ 298 (361)
+.++.+++..+++|+-.=+..+.. +. .....+..+.+.+.|+..+.++...-. .+=+.|..+++. . +.
T Consensus 125 ~iv~a~~~av~~iPVTVKiRlG~d---~~-~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ip 200 (323)
T COG0042 125 EIVKAMVEAVGDIPVTVKIRLGWD---DD-DILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIP 200 (323)
T ss_pred HHHHHHHHhhCCCCeEEEEecccC---cc-cccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCe
Confidence 455666666666777654443321 10 012345667777888888887765421 133566666554 3 78
Q ss_pred EEEeccCCCHHHHHHHHHhcCccEEEeCC-----hHHHHHH
Q 040734 299 LLTYGRLNNVAEAVYMQHLMGIDGVIVDL-----VQEITEA 334 (361)
Q Consensus 299 v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~-----p~~~~~~ 334 (361)
|++-|-|.+.+++.+++...|+||||.-+ |..+.+.
T Consensus 201 vi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i 241 (323)
T COG0042 201 VIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI 241 (323)
T ss_pred EEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH
Confidence 89988889999999988667899999854 5555553
No 148
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=62.95 E-value=1.3e+02 Score=27.84 Aligned_cols=140 Identities=11% Similarity=0.005 Sum_probs=83.3
Q ss_pred CHHHHHHhCCCCceEEEEEecCCccchhhhHH-HHHHHHHHHHHHHhcCC------CCEEEEcCCHHHHHHHHHHCCCCC
Q 040734 168 TLQEAFQQVDPNVGFNVELKFDDHIVYEQDYL-IRVIQAILKIVFEFAEN------RPIIFSTFQPDAAVLIRKLQSTYP 240 (361)
Q Consensus 168 tL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~-~~~v~~vl~~l~~~~~~------~rv~~~Sf~~~~l~~l~~~~p~~~ 240 (361)
.|.+.|. .+++.+..|+|..++.. +... ..-...+.....+.|.. +.- +...+.+.++.++... ++|
T Consensus 31 ~~~~~l~--~~~~~vIaEiKr~SPs~--G~i~~~~d~~~~A~~y~~~GA~aISVlTe~~-~F~Gs~~~l~~v~~~v-~~P 104 (247)
T PRK13957 31 PLRDSLK--SRSFSIIAECKRKSPSA--GELRADYHPVQIAKTYETLGASAISVLTDQS-YFGGSLEDLKSVSSEL-KIP 104 (247)
T ss_pred hHHHHHh--CCCCeEEEEEecCCCCC--CCcCCCCCHHHHHHHHHHCCCcEEEEEcCCC-cCCCCHHHHHHHHHhc-CCC
Confidence 3556553 34689999999865431 1000 00112233334444421 111 1245788888888864 466
Q ss_pred EEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc--CChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhc
Q 040734 241 VFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF--RNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLM 318 (361)
Q Consensus 241 ~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~ 318 (361)
+..--.-. . ..-+.-++.+|++++.+-...+- .-.++++.+++.|+.+.+= |++.+++.+.+ ..
T Consensus 105 vL~KDFIi---------d--~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVE--Vh~~~El~~a~-~~ 170 (247)
T PRK13957 105 VLRKDFIL---------D--EIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVE--VHTEDEAKLAL-DC 170 (247)
T ss_pred EEeccccC---------C--HHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEE--ECCHHHHHHHH-hC
Confidence 64321110 0 11233455689998876666541 1247899999999999998 78999998886 58
Q ss_pred CccEEEeCC
Q 040734 319 GIDGVIVDL 327 (361)
Q Consensus 319 GVdgI~TD~ 327 (361)
|.+.|-.|.
T Consensus 171 ga~iiGINn 179 (247)
T PRK13957 171 GAEIIGINT 179 (247)
T ss_pred CCCEEEEeC
Confidence 888776655
No 149
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=62.85 E-value=77 Score=30.09 Aligned_cols=107 Identities=14% Similarity=0.053 Sum_probs=62.1
Q ss_pred HHHHHHHHHHC-CCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc--------------cCChHHHH
Q 040734 226 PDAAVLIRKLQ-STYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV--------------FRNPGAVT 290 (361)
Q Consensus 226 ~~~l~~l~~~~-p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~v~ 290 (361)
.+.++.+|+.. +++++++-..........+......+.++.+...|++++++..... .....+++
T Consensus 195 ~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~ 274 (327)
T cd02803 195 LEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAE 274 (327)
T ss_pred HHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHH
Confidence 46777788765 4677776544321000001101122334455677888886543221 01225556
Q ss_pred HHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHH
Q 040734 291 KIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEIT 332 (361)
Q Consensus 291 ~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~ 332 (361)
.+++. ++.|.+-|.+.+.+++++++..-|+|.|..-++-...
T Consensus 275 ~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~lad 317 (327)
T cd02803 275 KIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLAD 317 (327)
T ss_pred HHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhC
Confidence 66554 6888777788999999999843379999877665543
No 150
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=62.84 E-value=88 Score=25.94 Aligned_cols=81 Identities=22% Similarity=0.159 Sum_probs=47.9
Q ss_pred cHHHHHHHHHhcCCcEEEcCCccc---cCChHHHHHHHHcCC---EEEEeccC-CC---HHHHHHHHHhcCccEEEe--C
Q 040734 259 SLEEAVKVCLEGGLQGIVSEVKGV---FRNPGAVTKIKESKL---SLLTYGRL-NN---VAEAVYMQHLMGIDGVIV--D 326 (361)
Q Consensus 259 ~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~v~~~~~~Gl---~v~~w~Tv-n~---~~~~~~~~~~~GVdgI~T--D 326 (361)
+.++..+.+.+.+++.+.++.... ..-+++++.+++.|. ++++=|.+ .. +.+....++.+|+|.|++ .
T Consensus 42 p~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~ 121 (137)
T PRK02261 42 SQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT 121 (137)
T ss_pred CHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCC
Confidence 356666777777777766554221 123578888888854 34443322 11 333323335799999996 4
Q ss_pred ChHHHHHHHHHhc
Q 040734 327 LVQEITEAVYDMI 339 (361)
Q Consensus 327 ~p~~~~~~l~~~~ 339 (361)
.++.+..++++..
T Consensus 122 ~~~~i~~~l~~~~ 134 (137)
T PRK02261 122 DPEEAIDDLKKDL 134 (137)
T ss_pred CHHHHHHHHHHHh
Confidence 5666677776643
No 151
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=62.72 E-value=2.2e+02 Score=30.51 Aligned_cols=165 Identities=12% Similarity=-0.000 Sum_probs=93.0
Q ss_pred CHHHHHHhCCCCceEEEEEecCCccchhhhHH-HHHHHHHHHHHHHhcC------CCCEEEEcCCHHHHHHHHHHCCCCC
Q 040734 168 TLQEAFQQVDPNVGFNVELKFDDHIVYEQDYL-IRVIQAILKIVFEFAE------NRPIIFSTFQPDAAVLIRKLQSTYP 240 (361)
Q Consensus 168 tL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~-~~~v~~vl~~l~~~~~------~~rv~~~Sf~~~~l~~l~~~~p~~~ 240 (361)
.+...|..- .++.++-|+|..++.. +... ..-...+.....+.|. .++-+| .-+.+.|+.+++.. ++|
T Consensus 39 ~~~~al~~~-~~~~vIaEiKraSPs~--G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F-~Gs~~~l~~vr~~v-~~P 113 (695)
T PRK13802 39 DATRWLKRA-DGIPVIAEIKRASPSK--GHLSDIPDPAALAREYEQGGASAISVLTEGRRF-LGSLDDFDKVRAAV-HIP 113 (695)
T ss_pred cHHHHHhhC-CCCeEEEEeecCCCCC--CcCCCCCCHHHHHHHHHHcCCcEEEEecCcCcC-CCCHHHHHHHHHhC-CCC
Confidence 344444321 2478999999876531 0000 0012223333444432 122222 23678888888764 567
Q ss_pred EEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc--CChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhc
Q 040734 241 VFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF--RNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLM 318 (361)
Q Consensus 241 ~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~ 318 (361)
+..- |+-.. +.-+.-++.+|++.|.+-...+- .-.++++.+++.|+.+.+= |.+.+++++.+ ..
T Consensus 114 vLrK---------DFIid--~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvE--vh~~~el~~a~-~~ 179 (695)
T PRK13802 114 VLRK---------DFIVT--DYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVE--THTREEIERAI-AA 179 (695)
T ss_pred EEec---------cccCC--HHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEE--eCCHHHHHHHH-hC
Confidence 6421 11101 11234567889998877665441 1258899999999999998 78999999987 58
Q ss_pred CccEEEeCC---------hHHHHHHHHHhcCCcccccccCcc
Q 040734 319 GIDGVIVDL---------VQEITEAVYDMIKPAKVVEKEDNK 351 (361)
Q Consensus 319 GVdgI~TD~---------p~~~~~~l~~~~~~~~~~~~~~~~ 351 (361)
|.+.|-.|. +....+.+...........+++.+
T Consensus 180 ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~ 221 (695)
T PRK13802 180 GAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVF 221 (695)
T ss_pred CCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 988774443 444445554443333334444433
No 152
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=62.59 E-value=48 Score=31.62 Aligned_cols=95 Identities=15% Similarity=0.278 Sum_probs=63.0
Q ss_pred EcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc---cc-------CChHHHHH
Q 040734 222 STFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG---VF-------RNPGAVTK 291 (361)
Q Consensus 222 ~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~---~~-------~~~~~v~~ 291 (361)
.|+++..++.||.. -++|+..---- . .+....|.++|+.||+++-+. +- .-++.|+.
T Consensus 208 ~Sl~W~Di~wLr~~-T~LPIvvKGil-----------t-~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~a 274 (363)
T KOG0538|consen 208 PSLSWKDIKWLRSI-TKLPIVVKGVL-----------T-GEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKA 274 (363)
T ss_pred CCCChhhhHHHHhc-CcCCeEEEeec-----------c-cHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHH
Confidence 47788999999876 36676431100 0 122345678899988766432 10 11455554
Q ss_pred HHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 292 IKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 292 ~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
.. -.+.|+.-|.|..-.+..+.+ ++|..+|+.-+|-..
T Consensus 275 V~-~ri~V~lDGGVR~G~DVlKAL-ALGAk~VfiGRP~v~ 312 (363)
T KOG0538|consen 275 VE-GRIPVFLDGGVRRGTDVLKAL-ALGAKGVFIGRPIVW 312 (363)
T ss_pred hc-CceEEEEecCcccchHHHHHH-hcccceEEecCchhe
Confidence 43 348888888888888988887 799999999998654
No 153
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=62.18 E-value=97 Score=29.75 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=41.5
Q ss_pred HHHhcCCcEEEcCCccc--cCChHHHHHHHHcC--CEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 266 VCLEGGLQGIVSEVKGV--FRNPGAVTKIKESK--LSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 266 ~~~~~~~~~i~~~~~~~--~~~~~~v~~~~~~G--l~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
.+.+.+++.+.++...- ....++++.+++++ +.|.+. ++.+.+.+..+. +.|+|+|..
T Consensus 101 ~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G-~v~t~~~A~~l~-~aGaD~I~v 162 (325)
T cd00381 101 ALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAG-NVVTAEAARDLI-DAGADGVKV 162 (325)
T ss_pred HHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEEC-CCCCHHHHHHHH-hcCCCEEEE
Confidence 33456788776554211 01246788899887 788886 899999998886 699999974
No 154
>PRK00208 thiG thiazole synthase; Reviewed
Probab=62.13 E-value=38 Score=31.27 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=33.3
Q ss_pred hHHHHHHHHc---CCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 286 PGAVTKIKES---KLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 286 ~~~v~~~~~~---Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
.+.++.++.. |+.|..| +.+|+...+++. ++|++.|+.
T Consensus 110 ~~tv~aa~~L~~~Gf~vlpy-c~~d~~~ak~l~-~~G~~~vmP 150 (250)
T PRK00208 110 IETLKAAEILVKEGFVVLPY-CTDDPVLAKRLE-EAGCAAVMP 150 (250)
T ss_pred HHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHH-HcCCCEeCC
Confidence 4778888888 9999999 899999998886 799999988
No 155
>PRK15452 putative protease; Provisional
Probab=61.77 E-value=1.8e+02 Score=29.26 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCC
Q 040734 206 ILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRN 285 (361)
Q Consensus 206 vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 285 (361)
.++.+.+.+. +-+++ -|+..+..+++..|++++..-+.... .-...+++....|+..+.+.... +
T Consensus 81 ~l~~l~~~gv-DgvIV--~d~G~l~~~ke~~p~l~ih~stqlni---------~N~~a~~f~~~lG~~rvvLSrEL---s 145 (443)
T PRK15452 81 DLEPVIAMKP-DALIM--SDPGLIMMVREHFPEMPIHLSVQANA---------VNWATVKFWQQMGLTRVILSREL---S 145 (443)
T ss_pred HHHHHHhCCC-CEEEE--cCHHHHHHHHHhCCCCeEEEEecccC---------CCHHHHHHHHHCCCcEEEECCcC---C
Confidence 3444445443 34555 46889999999989887755443211 11345667778899888877653 5
Q ss_pred hHHHHHHHHc--C--CEEEEec
Q 040734 286 PGAVTKIKES--K--LSLLTYG 303 (361)
Q Consensus 286 ~~~v~~~~~~--G--l~v~~w~ 303 (361)
-+-|+.++++ + +.++++|
T Consensus 146 l~EI~~i~~~~~~~elEvfVHG 167 (443)
T PRK15452 146 LEEIEEIRQQCPDMELEVFVHG 167 (443)
T ss_pred HHHHHHHHhhCCCCCEEEEEEc
Confidence 5666776533 3 4667764
No 156
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=61.74 E-value=78 Score=33.19 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHCCCCCEEEEccCCCc-cccccccccHHHHHHHHHhcCCcEEEcCCcc--ccCChHHHHHHHHcCCEE-
Q 040734 224 FQPDAAVLIRKLQSTYPVFFLTNGGTE-IFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG--VFRNPGAVTKIKESKLSL- 299 (361)
Q Consensus 224 f~~~~l~~l~~~~p~~~~~~l~~~~~~-~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~Gl~v- 299 (361)
-.++.++.+++..|+.++..+..+... .+......-+...++.+.+.|++.+.+-... +..-...++.++++|+.+
T Consensus 62 ~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 62 DPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQ 141 (593)
T ss_pred CHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEE
Confidence 357889999999999988766643211 1111112234556777888888876654321 111236789999999974
Q ss_pred --EEeccCCC---HHHH---HHHHHhcCccEEE-eCC-----hHHHHHHHHHh
Q 040734 300 --LTYGRLNN---VAEA---VYMQHLMGIDGVI-VDL-----VQEITEAVYDM 338 (361)
Q Consensus 300 --~~w~Tvn~---~~~~---~~~~~~~GVdgI~-TD~-----p~~~~~~l~~~ 338 (361)
.+| |... .+.+ .+.+.++|+|.|. .|- |..+.+.++.+
T Consensus 142 ~~i~y-t~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~l 193 (593)
T PRK14040 142 GTLSY-TTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRI 193 (593)
T ss_pred EEEEE-eeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHH
Confidence 456 4432 2222 2223368999876 454 66666665554
No 157
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=61.53 E-value=44 Score=33.08 Aligned_cols=93 Identities=12% Similarity=0.068 Sum_probs=57.4
Q ss_pred EEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc-CChHHHHHHHHcCCEE
Q 040734 221 FSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF-RNPGAVTKIKESKLSL 299 (361)
Q Consensus 221 ~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~~~~Gl~v 299 (361)
+.+|..+.++.+++..|+.++.+=.... |.. .+ ..+.+.+.|++.+.++...-. .-.+.++.+++.|+.+
T Consensus 209 ~~~~G~~iVk~Lr~~~~~~~I~~DLK~~-----Di~--~~--vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~Gikv 279 (391)
T PRK13307 209 IKKFGLEVISKIREVRPDAFIVADLKTL-----DTG--NL--EARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYS 279 (391)
T ss_pred HHHhCHHHHHHHHHhCCCCeEEEEeccc-----Chh--hH--HHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEE
Confidence 3478899999999988876654322111 111 11 144556889988888764321 1246889999999999
Q ss_pred EEeccCC--CHHHHHHHHHhcCccEEE
Q 040734 300 LTYGRLN--NVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 300 ~~w~Tvn--~~~~~~~~~~~~GVdgI~ 324 (361)
.+- .+| ++.+..+.+ ..++|.|.
T Consensus 280 gVD-~lnp~tp~e~i~~l-~~~vD~Vl 304 (391)
T PRK13307 280 ILD-MLNVEDPVKLLESL-KVKPDVVE 304 (391)
T ss_pred EEE-EcCCCCHHHHHHHh-hCCCCEEE
Confidence 885 455 444433332 37888663
No 158
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=61.38 E-value=79 Score=32.09 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHCCCCCEEEEccCCCc-cccccccccHHHHHHHHHhcCCcEEEcCCcc--ccCChHHHHHHHHcCCEE--
Q 040734 225 QPDAAVLIRKLQSTYPVFFLTNGGTE-IFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG--VFRNPGAVTKIKESKLSL-- 299 (361)
Q Consensus 225 ~~~~l~~l~~~~p~~~~~~l~~~~~~-~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~Gl~v-- 299 (361)
.++.|+.+++..|+.+...|..+... -+.+....-++..++.+...|++.+-+--.. .-.....++.+++.|..+
T Consensus 71 pwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~ 150 (468)
T PRK12581 71 PWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQL 150 (468)
T ss_pred HHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 58899999999999998877664221 1111112224556777888888765443221 112357788999999885
Q ss_pred -EEeccCCCHH------H-HHHHHHhcCccEEE-eCC-----hHHHHHHHHHhc
Q 040734 300 -LTYGRLNNVA------E-AVYMQHLMGIDGVI-VDL-----VQEITEAVYDMI 339 (361)
Q Consensus 300 -~~w~Tvn~~~------~-~~~~~~~~GVdgI~-TD~-----p~~~~~~l~~~~ 339 (361)
.+| |..... + ++++ .++|+|.|. .|- |..+.+.++.+.
T Consensus 151 ~i~y-t~sp~~t~~y~~~~a~~l-~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk 202 (468)
T PRK12581 151 CIAY-TTSPVHTLNYYLSLVKEL-VEMGADSICIKDMAGILTPKAAKELVSGIK 202 (468)
T ss_pred EEEE-EeCCcCcHHHHHHHHHHH-HHcCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 456 443311 2 2234 368999887 454 777776666653
No 159
>PRK08227 autoinducer 2 aldolase; Validated
Probab=61.12 E-value=97 Score=28.93 Aligned_cols=110 Identities=10% Similarity=0.030 Sum_probs=59.0
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc--------cCChHHHHHHHHcCC
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV--------FRNPGAVTKIKESKL 297 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~v~~~~~~Gl 297 (361)
.-.++......++.|+.+=.+..+..+.+.....+--.++.+.++|++++......- ..-.+.++.+++.|+
T Consensus 62 ~G~~~~~~~~~~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~ 141 (264)
T PRK08227 62 RGILRSVVPPATNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGM 141 (264)
T ss_pred hhHHHhcccccCCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 555555444455566444333332211111111111123446677887776544321 012367789999999
Q ss_pred EEEEeccCC-----CHHH-HH---HHHHhcCccEEEeCChH-HHHHHHH
Q 040734 298 SLLTYGRLN-----NVAE-AV---YMQHLMGIDGVIVDLVQ-EITEAVY 336 (361)
Q Consensus 298 ~v~~w~Tvn-----~~~~-~~---~~~~~~GVdgI~TD~p~-~~~~~l~ 336 (361)
.+.+| ... ++.+ +. ++..++|.|-|=|++|. .+.++.+
T Consensus 142 Plla~-~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~~~f~~vv~ 189 (264)
T PRK08227 142 PVMAV-TAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVEEGFERITA 189 (264)
T ss_pred cEEEE-ecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCHHHHHHHHH
Confidence 99998 422 2222 22 22336999999999998 4555555
No 160
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.90 E-value=50 Score=32.07 Aligned_cols=107 Identities=14% Similarity=0.114 Sum_probs=60.1
Q ss_pred HHHHHHHHHHC-----CCCCEEEEccCCCccccccccccHHH---HHHHHHhcCCcEEEcCCcccc--------CChHHH
Q 040734 226 PDAAVLIRKLQ-----STYPVFFLTNGGTEIFYDVRRNSLEE---AVKVCLEGGLQGIVSEVKGVF--------RNPGAV 289 (361)
Q Consensus 226 ~~~l~~l~~~~-----p~~~~~~l~~~~~~~~~d~~~~~l~~---~~~~~~~~~~~~i~~~~~~~~--------~~~~~v 289 (361)
.++++.+|+.. +++++++-.........+ .+.++ .++.+.+.|++.+++...... ....++
T Consensus 198 ~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g---~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~ 274 (353)
T cd04735 198 LAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPG---IRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIM 274 (353)
T ss_pred HHHHHHHHHHhccccCCCceEEEEECcccccCCC---CCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHH
Confidence 36777777765 467776544332100001 12333 344556678888876532110 012445
Q ss_pred HHHHHc---CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC-----hHHHHHHHH
Q 040734 290 TKIKES---KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL-----VQEITEAVY 336 (361)
Q Consensus 290 ~~~~~~---Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~-----p~~~~~~l~ 336 (361)
+.+++. +++|++=|-+.+++++++++. .|+|+|.--+ |+...++..
T Consensus 275 ~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~-~gaD~V~~gR~liadPdl~~k~~~ 328 (353)
T cd04735 275 ELVKERIAGRLPLIAVGSINTPDDALEALE-TGADLVAIGRGLLVDPDWVEKIKE 328 (353)
T ss_pred HHHHHHhCCCCCEEEECCCCCHHHHHHHHH-cCCChHHHhHHHHhCccHHHHHHc
Confidence 555554 677877668999999999985 5888765322 555555443
No 161
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=60.82 E-value=99 Score=27.93 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCcEEEcCCc------cccCChHHHHHHHHc--CCEEEEeccCCCHHHHHHHHHhcCccEEE-----eC
Q 040734 260 LEEAVKVCLEGGLQGIVSEVK------GVFRNPGAVTKIKES--KLSLLTYGRLNNVAEAVYMQHLMGIDGVI-----VD 326 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~------~~~~~~~~v~~~~~~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~-----TD 326 (361)
+.+-++.....|++.+|++.- .+...+..++.+++. .+.+-+---+.+++.+...+...|+|.|+ |+
T Consensus 14 l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~ 93 (220)
T PRK08883 14 LGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASE 93 (220)
T ss_pred HHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcc
Confidence 455556666777887776641 112357888888875 34443332356677665444468988776 55
Q ss_pred ChHHHHHHHHHhc
Q 040734 327 LVQEITEAVYDMI 339 (361)
Q Consensus 327 ~p~~~~~~l~~~~ 339 (361)
++.++.+++++.+
T Consensus 94 ~~~~~l~~ik~~g 106 (220)
T PRK08883 94 HVDRTLQLIKEHG 106 (220)
T ss_pred cHHHHHHHHHHcC
Confidence 6667767666654
No 162
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=60.61 E-value=44 Score=30.03 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=67.3
Q ss_pred HHHHHHhcCC-CCEEEEcCC-HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccC
Q 040734 207 LKIVFEFAEN-RPIIFSTFQ-PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFR 284 (361)
Q Consensus 207 l~~l~~~~~~-~rv~~~Sf~-~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 284 (361)
.+.+-+-|.. =-+.+.|-. .+.++.+++.+|+.-++ .++. .+. +..+-+...|...++.+. .
T Consensus 31 a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIG----AGTV-------L~~-~q~~~a~~aGa~fiVsP~----~ 94 (211)
T COG0800 31 AKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIG----AGTV-------LNP-EQARQAIAAGAQFIVSPG----L 94 (211)
T ss_pred HHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEc----cccc-------cCH-HHHHHHHHcCCCEEECCC----C
Confidence 3334445532 123344433 56777777777744333 3321 011 223445678888776543 2
Q ss_pred ChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHH---HHHHHhcCC
Q 040734 285 NPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEIT---EAVYDMIKP 341 (361)
Q Consensus 285 ~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~---~~l~~~~~~ 341 (361)
++++++.++++|+.+..= +.++.|+...+ ++|.+. +--+|.... .+++.+..|
T Consensus 95 ~~ev~~~a~~~~ip~~PG--~~TptEi~~Al-e~G~~~-lK~FPa~~~Gg~~~~ka~~gP 150 (211)
T COG0800 95 NPEVAKAANRYGIPYIPG--VATPTEIMAAL-ELGASA-LKFFPAEVVGGPAMLKALAGP 150 (211)
T ss_pred CHHHHHHHHhCCCcccCC--CCCHHHHHHHH-HcChhh-eeecCccccCcHHHHHHHcCC
Confidence 899999999999988765 67888888876 699873 344554443 444444433
No 163
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.49 E-value=1.4e+02 Score=28.08 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=55.4
Q ss_pred HHHHHHHHHHCCC-CCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHH---c---CCE
Q 040734 226 PDAAVLIRKLQST-YPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKE---S---KLS 298 (361)
Q Consensus 226 ~~~l~~l~~~~p~-~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~---~---Gl~ 298 (361)
...++.+|+..|. .++.. + ..+++++...+ ..|++.|.++.- +++.++++-+ . ...
T Consensus 169 ~~~v~~~k~~~p~~~~I~V--E----------v~tleea~~A~-~~GaDiI~LDn~----~~e~l~~~v~~~~~~~~~~~ 231 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEI--E----------CESLEEAKNAM-NAGADIVMCDNM----SVEEIKEVVAYRNANYPHVL 231 (273)
T ss_pred HHHHHHHHHhCCCCceEEE--E----------eCCHHHHHHHH-HcCCCEEEECCC----CHHHHHHHHHHhhccCCCeE
Confidence 4567778887774 33322 1 13577766665 688998886532 5555554433 2 445
Q ss_pred EEEeccCCCHHHHHHHHHhcCccEEEeCChH
Q 040734 299 LLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQ 329 (361)
Q Consensus 299 v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~ 329 (361)
+.+=|-+ +++.+..+. ..|||.|.+-.+.
T Consensus 232 ieAsGgI-t~~ni~~ya-~~GvD~IsvG~l~ 260 (273)
T PRK05848 232 LEASGNI-TLENINAYA-KSGVDAISSGSLI 260 (273)
T ss_pred EEEECCC-CHHHHHHHH-HcCCCEEEeChhh
Confidence 7777667 677777776 6999999987654
No 164
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=60.46 E-value=60 Score=29.13 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
..+.++.+.+.++++++++.. ....+++.+++.++.+..- +.+.+++..+. ..|+|+|..+.
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~---~~~~~~~~~~~~~i~~i~~--v~~~~~~~~~~-~~gad~i~~~~ 130 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFG---PPAEVVERLKAAGIKVIPT--VTSVEEARKAE-AAGADALVAQG 130 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCC---CCHHHHHHHHHcCCEEEEe--CCCHHHHHHHH-HcCCCEEEEeC
Confidence 556677788899999987654 3688899999999888654 56667777765 58999988643
No 165
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=60.26 E-value=65 Score=25.11 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCc
Q 040734 201 RVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVK 280 (361)
Q Consensus 201 ~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~ 280 (361)
.+...+++.+.+.+ .++++...+++.++.++... ++.. ..... + .+.++-+.-..+..+.+...
T Consensus 8 ~~~~~i~~~L~~~~--~~vvvid~d~~~~~~~~~~~--~~~i--~gd~~----~------~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 8 RIGREIAEQLKEGG--IDVVVIDRDPERVEELREEG--VEVI--YGDAT----D------PEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTT--SEEE--ES-TT----S------HHHHHHTTGGCESEEEEESS
T ss_pred HHHHHHHHHHHhCC--CEEEEEECCcHHHHHHHhcc--cccc--cccch----h------hhHHhhcCccccCEEEEccC
Confidence 46677788887742 47899999999999988764 3332 22211 0 11122222223444443332
Q ss_pred cccCChHHHHHHHHcC--CEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 281 GVFRNPGAVTKIKESK--LSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 281 ~~~~~~~~v~~~~~~G--l~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
....+-.....+++.+ .++++- ++++.....+. .+|+|.|++
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~--~~~~~~~~~l~-~~g~d~vi~ 115 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIAR--VNDPENAELLR-QAGADHVIS 115 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEE--ESSHHHHHHHH-HTT-SEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEE--ECCHHHHHHHH-HCCcCEEEC
Confidence 2222345566777744 455555 67777776664 799999875
No 166
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=59.88 E-value=44 Score=27.81 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=48.5
Q ss_pred cHHHHHHHHHhcCCcEEEcCCccc---cCChHHHHHHHHcCCEEEEe---cc-CCCHHHH----HHHHHhcCccEEEe--
Q 040734 259 SLEEAVKVCLEGGLQGIVSEVKGV---FRNPGAVTKIKESKLSLLTY---GR-LNNVAEA----VYMQHLMGIDGVIV-- 325 (361)
Q Consensus 259 ~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~v~~~~~~Gl~v~~w---~T-vn~~~~~----~~~~~~~GVdgI~T-- 325 (361)
+.++.++.+++.+++.+.++.-.. ..-+++++.++++|+.-..| |+ +..+++. .++ .++|++.|+.
T Consensus 40 ~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l-~~~Gv~~vF~pg 118 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRF-KEMGFDRVFAPG 118 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHH-HHcCCCEEECcC
Confidence 456677777777777766554221 11357888999998633333 22 2222332 234 5799999996
Q ss_pred CChHHHHHHHHHh
Q 040734 326 DLVQEITEAVYDM 338 (361)
Q Consensus 326 D~p~~~~~~l~~~ 338 (361)
..++.+.+++++.
T Consensus 119 t~~~~iv~~l~~~ 131 (134)
T TIGR01501 119 TPPEVVIADLKKD 131 (134)
T ss_pred CCHHHHHHHHHHH
Confidence 5677777777653
No 167
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=59.87 E-value=1.4e+02 Score=27.20 Aligned_cols=109 Identities=11% Similarity=0.058 Sum_probs=62.4
Q ss_pred CCEEEEcC---CHHHHHHHHHHCCCCCEEEEcc-CCCcccccc---ccccHHHHHHHHHhcCCcEEEcC-Cccc----cC
Q 040734 217 RPIIFSTF---QPDAAVLIRKLQSTYPVFFLTN-GGTEIFYDV---RRNSLEEAVKVCLEGGLQGIVSE-VKGV----FR 284 (361)
Q Consensus 217 ~rv~~~Sf---~~~~l~~l~~~~p~~~~~~l~~-~~~~~~~d~---~~~~l~~~~~~~~~~~~~~i~~~-~~~~----~~ 284 (361)
+++++.|- |++.++.+.+.+|+-.+.-+-. .+......| ....+.+.++....+++..+.+. .... =.
T Consensus 100 ~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~ 179 (234)
T PRK13587 100 NYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGP 179 (234)
T ss_pred CEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCcc
Confidence 45666552 5666666666665432222111 110000011 11235566666667777654332 2110 12
Q ss_pred ChHHHHHHHH-cCCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 285 NPGAVTKIKE-SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 285 ~~~~v~~~~~-~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
+-++++.+.+ .+++|.+-|-+.+.+++.+++ .+|+++++.-
T Consensus 180 ~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~-~~G~~~vivG 221 (234)
T PRK13587 180 NFELTGQLVKATTIPVIASGGIRHQQDIQRLA-SLNVHAAIIG 221 (234)
T ss_pred CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEh
Confidence 4566777755 478999988899999999987 6999999974
No 168
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=59.82 E-value=59 Score=26.15 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCcEEEcCCccc---cCChHHHHHHHHcCC-EEEEe--ccCCCHHHHHHHHHhcCccEEEe--CChHHH
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGV---FRNPGAVTKIKESKL-SLLTY--GRLNNVAEAVYMQHLMGIDGVIV--DLVQEI 331 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~v~~~~~~Gl-~v~~w--~Tvn~~~~~~~~~~~~GVdgI~T--D~p~~~ 331 (361)
.++....+.+.+++.+.+....- ..-+++++.+++.|. .+.+| |. .-++++.++. ++|+|+++- -.++..
T Consensus 39 ~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~-~~~~~~~~~~-~~G~d~~~~~~~~~~~~ 116 (122)
T cd02071 39 PEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGI-IPPEDYELLK-EMGVAEIFGPGTSIEEI 116 (122)
T ss_pred HHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECC-CCHHHHHHHH-HCCCCEEECCCCCHHHH
Confidence 44555556666666555543221 112577888888865 33333 21 2344566664 699999983 445555
Q ss_pred HHHHH
Q 040734 332 TEAVY 336 (361)
Q Consensus 332 ~~~l~ 336 (361)
..+++
T Consensus 117 ~~~~~ 121 (122)
T cd02071 117 IDKIR 121 (122)
T ss_pred HHHHh
Confidence 55543
No 169
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=59.80 E-value=1.1e+02 Score=27.80 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=51.6
Q ss_pred cHHHHHHHHHhcCCcEEEcCCc------cccCChHHHHHHHHc--C--CEEEEeccCCCHHHHHHHHHhcCccEEE----
Q 040734 259 SLEEAVKVCLEGGLQGIVSEVK------GVFRNPGAVTKIKES--K--LSLLTYGRLNNVAEAVYMQHLMGIDGVI---- 324 (361)
Q Consensus 259 ~l~~~~~~~~~~~~~~i~~~~~------~~~~~~~~v~~~~~~--G--l~v~~w~Tvn~~~~~~~~~~~~GVdgI~---- 324 (361)
.+.+-++.....|++.+|++.- .+...+..++.+++. . +.|+.- +.+++.+...+...|+|.|+
T Consensus 17 ~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLM--v~~P~~~i~~~~~~gad~I~~H~E 94 (223)
T PRK08745 17 RLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLM--VEPVDRIVPDFADAGATTISFHPE 94 (223)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEec--cCCHHHHHHHHHHhCCCEEEEccc
Confidence 3555666777788888876641 112357889999886 3 444554 56677654443468999887
Q ss_pred -eCChHHHHHHHHHhc
Q 040734 325 -VDLVQEITEAVYDMI 339 (361)
Q Consensus 325 -TD~p~~~~~~l~~~~ 339 (361)
|+++..+.+++++.+
T Consensus 95 a~~~~~~~l~~Ir~~g 110 (223)
T PRK08745 95 ASRHVHRTIQLIKSHG 110 (223)
T ss_pred CcccHHHHHHHHHHCC
Confidence 566777777777655
No 170
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=59.68 E-value=60 Score=31.55 Aligned_cols=42 Identities=19% Similarity=0.422 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCC-CCEEEEc
Q 040734 201 RVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQST-YPVFFLT 245 (361)
Q Consensus 201 ~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~-~~~~~l~ 245 (361)
.+.++ ++.+.+++ -.+++.|||++.+++.-+...+ -|..|..
T Consensus 147 kfa~a-ve~v~~~~--~pv~l~s~dpevmkaaLev~~dqkPllYaA 189 (467)
T COG1456 147 KFAEA-VEKVAEAG--LPVILCSFDPEVMKAALEVVKDQKPLLYAA 189 (467)
T ss_pred HHHHH-HHHHHhcC--CcEEEEeCCHHHHHHHHHHhhccCceeeec
Confidence 45444 44555565 4799999999999987666555 5666544
No 171
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=59.12 E-value=50 Score=27.81 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCcEEEcCCc---cccCChHHHHHHHHcCCEE---EEeccCCCHHHHHHHHHhcCccEEEe---CChHH
Q 040734 260 LEEAVKVCLEGGLQGIVSEVK---GVFRNPGAVTKIKESKLSL---LTYGRLNNVAEAVYMQHLMGIDGVIV---DLVQE 330 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~---~~~~~~~~v~~~~~~Gl~v---~~w~Tvn~~~~~~~~~~~~GVdgI~T---D~p~~ 330 (361)
.++++..|.+.+.+.+.++.. .....+.+++.++++|..= ++= -+=.+++..++. ++|+++|++ +-.+.
T Consensus 52 p~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~G-Gvip~~d~~~l~-~~G~~~if~pgt~~~~~ 129 (143)
T COG2185 52 PEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVG-GVIPPGDYQELK-EMGVDRIFGPGTPIEEA 129 (143)
T ss_pred HHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeec-CccCchhHHHHH-HhCcceeeCCCCCHHHH
Confidence 455666665555555544321 1123589999999999543 333 344566676674 799999995 44555
Q ss_pred HHHHHHHhc
Q 040734 331 ITEAVYDMI 339 (361)
Q Consensus 331 ~~~~l~~~~ 339 (361)
+...+.++.
T Consensus 130 ~~~v~~~l~ 138 (143)
T COG2185 130 LSDLLTRLG 138 (143)
T ss_pred HHHHHHHHH
Confidence 555555443
No 172
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=59.09 E-value=55 Score=29.48 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=40.4
Q ss_pred HHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 265 KVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
+.|...+++|+|+...-. ......++...++.| .+ ++++.+++.+.. .+|+|.|..-
T Consensus 75 dlA~~~~AdGVHlGq~D~--~~~~ar~~~~~~~iI-G~-S~h~~eea~~A~-~~g~DYv~~G 131 (211)
T COG0352 75 DLALAVGADGVHLGQDDM--PLAEARELLGPGLII-GL-STHDLEEALEAE-ELGADYVGLG 131 (211)
T ss_pred HHHHhCCCCEEEcCCccc--chHHHHHhcCCCCEE-Ee-ecCCHHHHHHHH-hcCCCEEEEC
Confidence 467788999999887633 445556665555544 45 567999998886 5899988743
No 173
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=59.04 E-value=1.2e+02 Score=29.63 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=56.8
Q ss_pred HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc----------------ccCChHHHH
Q 040734 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG----------------VFRNPGAVT 290 (361)
Q Consensus 227 ~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~----------------~~~~~~~v~ 290 (361)
+.++++|+.+|++++..=.-. +.+. .+.....|++++-+-..- +...-+..+
T Consensus 138 ~~ik~ik~~~~~~~viaGNV~-----------T~e~-a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~ 205 (352)
T PF00478_consen 138 DMIKKIKKKFPDVPVIAGNVV-----------TYEG-AKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAE 205 (352)
T ss_dssp HHHHHHHHHSTTSEEEEEEE------------SHHH-HHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCceEEecccC-----------CHHH-HHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHH
Confidence 467788888887777532211 2232 333446777776544321 000125566
Q ss_pred HHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 291 KIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 291 ~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
.+++.|++|++-|-+.+..++.+.+ .+|.|.||--.+
T Consensus 206 ~a~~~~v~iIADGGi~~sGDi~KAl-a~GAd~VMlG~l 242 (352)
T PF00478_consen 206 AARDYGVPIIADGGIRTSGDIVKAL-AAGADAVMLGSL 242 (352)
T ss_dssp HHHCTTSEEEEESS-SSHHHHHHHH-HTT-SEEEESTT
T ss_pred HhhhccCceeecCCcCcccceeeee-eecccceeechh
Confidence 7788899999999899999999997 699999997653
No 174
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=58.27 E-value=1.3e+02 Score=28.68 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCcEEEcCCccc------cCChHHHHHHHH-cCCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGV------FRNPGAVTKIKE-SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~------~~~~~~v~~~~~-~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
..+..+.+...|++.+.++.... ...-+.+..+++ .++.|++-|-+.+.+++.+++...|+|+|+.-++
T Consensus 149 ~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRG 224 (319)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChh
Confidence 34455556677888776653321 012355666655 4788888878999999999875578999998643
No 175
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=58.14 E-value=51 Score=30.13 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCcEEEcCCcccc---CChHHHHHHHHc--CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 261 EEAVKVCLEGGLQGIVSEVKGVF---RNPGAVTKIKES--KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~~---~~~~~v~~~~~~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
.+..+.+.+.|+++++++...-- ..-+.|..+++. ++.|+.-|-|.+.+++.+++. .|+|+|+.-+
T Consensus 151 ~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~-~GAd~VmvgR 221 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK-AGADFVSVAR 221 (231)
T ss_pred HHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH-hCCCeEEEcH
Confidence 35556677899999988632210 134678888776 388999989999999999984 9999999765
No 176
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=57.88 E-value=83 Score=33.00 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHCCCCCEEEEccCCCcc-ccccccccHHHHHHHHHhcCCcEEEcCCcc--ccCChHHHHHHHHcCCEEE-
Q 040734 225 QPDAAVLIRKLQSTYPVFFLTNGGTEI-FYDVRRNSLEEAVKVCLEGGLQGIVSEVKG--VFRNPGAVTKIKESKLSLL- 300 (361)
Q Consensus 225 ~~~~l~~l~~~~p~~~~~~l~~~~~~~-~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~Gl~v~- 300 (361)
.++.|+.+|+..|+.+...|..+.... +......-+...++.+.+.|++.+-+--.. .-.....++.+++.|..+.
T Consensus 62 pwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~ 141 (596)
T PRK14042 62 PWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQG 141 (596)
T ss_pred HHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEE
Confidence 478999999999999998877543321 112222335556777888888765432221 1112467899999998773
Q ss_pred --EeccCC---CHHHHHH---HHHhcCccEEE-eCC-----hHHHHHHHHHh
Q 040734 301 --TYGRLN---NVAEAVY---MQHLMGIDGVI-VDL-----VQEITEAVYDM 338 (361)
Q Consensus 301 --~w~Tvn---~~~~~~~---~~~~~GVdgI~-TD~-----p~~~~~~l~~~ 338 (361)
+| |.. +.+.+.+ .+.++|+|.|. .|- |..+.+.+..+
T Consensus 142 ~i~y-t~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~al 192 (596)
T PRK14042 142 AICY-TTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGL 192 (596)
T ss_pred EEEe-cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHH
Confidence 36 543 3333222 23368999876 353 66666666554
No 177
>PLN02334 ribulose-phosphate 3-epimerase
Probab=57.74 E-value=1.3e+02 Score=27.00 Aligned_cols=88 Identities=17% Similarity=0.111 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHHHCCCCC-EEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc--ccCChHHHHHHHHcCCEE
Q 040734 223 TFQPDAAVLIRKLQSTYP-VFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG--VFRNPGAVTKIKESKLSL 299 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~-~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~Gl~v 299 (361)
+|.+..++.+++. ++.+ -..+.-.. ..+.+..+...|++++.++... .-.....++.+++.|+.+
T Consensus 51 ~~g~~~~~~l~~~-~~~~~~vhlmv~~-----------p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~i 118 (229)
T PLN02334 51 TIGPPVVKALRKH-TDAPLDCHLMVTN-----------PEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKA 118 (229)
T ss_pred ccCHHHHHHHHhc-CCCcEEEEeccCC-----------HHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeE
Confidence 4677888888877 5544 23332111 1233455678899999555441 112347889999999987
Q ss_pred EEeccCCCHHH-HHHHHHhcC-ccEE
Q 040734 300 LTYGRLNNVAE-AVYMQHLMG-IDGV 323 (361)
Q Consensus 300 ~~w~Tvn~~~~-~~~~~~~~G-VdgI 323 (361)
..-...+++.+ ++.++ ..| +|.|
T Consensus 119 Gls~~~~t~~~~~~~~~-~~~~~Dyi 143 (229)
T PLN02334 119 GVVLNPGTPVEAVEPVV-EKGLVDMV 143 (229)
T ss_pred EEEECCCCCHHHHHHHH-hccCCCEE
Confidence 66511124444 44443 343 8876
No 178
>PRK06852 aldolase; Validated
Probab=57.72 E-value=1.6e+02 Score=28.13 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=59.5
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCcccc----c---cccccHHHHHHHHH--hcCCcEEEcCCccc--------cCChHH
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFY----D---VRRNSLEEAVKVCL--EGGLQGIVSEVKGV--------FRNPGA 288 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~----d---~~~~~l~~~~~~~~--~~~~~~i~~~~~~~--------~~~~~~ 288 (361)
.-.++......++.|+.+=.+..+.... + .-..++++++++.. .+|++++......- ..-.+.
T Consensus 80 ~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v 159 (304)
T PRK06852 80 LGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQI 159 (304)
T ss_pred HHHHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHH
Confidence 5566655555566775543333322111 1 11233555444321 12355655443221 012367
Q ss_pred HHHHHHcCCEEEEeccC------C---CHHHHH---HHHHhcCccEEEeCCh--------HHHHHHHHH
Q 040734 289 VTKIKESKLSLLTYGRL------N---NVAEAV---YMQHLMGIDGVIVDLV--------QEITEAVYD 337 (361)
Q Consensus 289 v~~~~~~Gl~v~~w~Tv------n---~~~~~~---~~~~~~GVdgI~TD~p--------~~~~~~l~~ 337 (361)
++.+++.|+.+.+| .. . +++.+. ++..++|.|.|=|++| +.+.++...
T Consensus 160 ~~ea~~~GlPll~~-~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~ 227 (304)
T PRK06852 160 IYEAHKHGLIAVLW-IYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLA 227 (304)
T ss_pred HHHHHHhCCcEEEE-eeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHh
Confidence 78999999999988 41 1 222222 2334699999999998 456666554
No 179
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=57.60 E-value=1.2e+02 Score=31.22 Aligned_cols=88 Identities=13% Similarity=0.163 Sum_probs=57.4
Q ss_pred HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCC-------ccc-------cCCh--HHHH
Q 040734 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEV-------KGV-------FRNP--GAVT 290 (361)
Q Consensus 227 ~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~-------~~~-------~~~~--~~v~ 290 (361)
+.++++|+.+|+.++..-.- .+.+++ ..+.+.|+++|.+.. ... ..+. .+-+
T Consensus 278 ~~i~~ik~~~p~~~vi~g~v-----------~t~e~a-~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~ 345 (505)
T PLN02274 278 EMIKYIKKTYPELDVIGGNV-----------VTMYQA-QNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVAS 345 (505)
T ss_pred HHHHHHHHhCCCCcEEEecC-----------CCHHHH-HHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHH
Confidence 67889999888877643211 123343 344578998884421 100 0011 2333
Q ss_pred HHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 291 KIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 291 ~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
.+++.+++|++-|-+.+..++.+++ .+|.++|+.-.
T Consensus 346 ~~~~~~vpVIadGGI~~~~di~kAl-a~GA~~V~vGs 381 (505)
T PLN02274 346 IAAQHGVPVIADGGISNSGHIVKAL-TLGASTVMMGS 381 (505)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEch
Confidence 4456689999998999999999997 69999998765
No 180
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=57.01 E-value=1.5e+02 Score=26.95 Aligned_cols=96 Identities=14% Similarity=0.006 Sum_probs=56.3
Q ss_pred cCCHHHHHHHHHHCCCCCE-EEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEE
Q 040734 223 TFQPDAAVLIRKLQSTYPV-FFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLT 301 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~ 301 (361)
+|.+..++.+|+..++.|. ..|.-.. .+..++.....|++.+..++....-..+.++.+|++|++..+
T Consensus 47 tfg~~~i~~lr~~~~~~~~dvHLMv~~-----------P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~Gl 115 (223)
T PRK08745 47 TIGPMVCQALRKHGITAPIDVHLMVEP-----------VDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGL 115 (223)
T ss_pred ccCHHHHHHHHhhCCCCCEEEEeccCC-----------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeE
Confidence 7899999999986455553 2232211 222333444678888888877422234888999999998865
Q ss_pred eccCCCH-HHHHHHHHhcCccEEEeCChH
Q 040734 302 YGRLNNV-AEAVYMQHLMGIDGVIVDLVQ 329 (361)
Q Consensus 302 w~Tvn~~-~~~~~~~~~~GVdgI~TD~p~ 329 (361)
=--..++ +.+.+++.....=-|||=.|.
T Consensus 116 alnP~T~~~~i~~~l~~vD~VlvMtV~PG 144 (223)
T PRK08745 116 VLNPATPVDILDWVLPELDLVLVMSVNPG 144 (223)
T ss_pred EeCCCCCHHHHHHHHhhcCEEEEEEECCC
Confidence 4123333 345555432222245565554
No 181
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=56.50 E-value=1.6e+02 Score=27.58 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=36.2
Q ss_pred HHHHHHHH-cCCEEEEeccCCCHHHHHHHHHhcCccEEEeC-----ChHHHHHHHHH
Q 040734 287 GAVTKIKE-SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD-----LVQEITEAVYD 337 (361)
Q Consensus 287 ~~v~~~~~-~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD-----~p~~~~~~l~~ 337 (361)
+++..+++ .++.|+.=|-+.+.+++.+++ ..|+|+|+.- .|..+.++.+.
T Consensus 221 ~~i~~i~~~~~ipii~~GGI~~~~da~~~l-~~GAd~V~igra~l~~p~~~~~i~~~ 276 (296)
T cd04740 221 RMVYQVYKAVEIPIIGVGGIASGEDALEFL-MAGASAVQVGTANFVDPEAFKEIIEG 276 (296)
T ss_pred HHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCCEEEEchhhhcChHHHHHHHHH
Confidence 56666655 378888877899999999998 5999988744 45555555443
No 182
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=56.49 E-value=86 Score=28.40 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCcEEEcCCccc-----cCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 261 EEAVKVCLEGGLQGIVSEVKGV-----FRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
.+..+.+...|+..+.++...- -.+-++++.+++. +++|++-|-+.+++++..++...|+|+++.-.+
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~a 225 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASI 225 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHH
Confidence 3444556677888766533110 1134777777654 799998888999999999874349999998654
No 183
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=56.49 E-value=1.4e+02 Score=28.18 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=32.6
Q ss_pred ChHHHHHHHHc-CCEEE--EeccCCCHHHHHHHHHhcCccEEEe
Q 040734 285 NPGAVTKIKES-KLSLL--TYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 285 ~~~~v~~~~~~-Gl~v~--~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
..++++.+++. +++|+ +=|-+.+++++..++ .+|+|||+.
T Consensus 185 ~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~m-elGAdGVaV 227 (287)
T TIGR00343 185 PVELLLEVLKLGKLPVVNFAAGGVATPADAALMM-QLGADGVFV 227 (287)
T ss_pred CHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHH-HcCCCEEEE
Confidence 56888888876 48887 666788999999987 699999974
No 184
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=56.31 E-value=2e+02 Score=27.99 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCCCCEEEEcCC-----------HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhc
Q 040734 202 VIQAILKIVFEFAENRPIIFSTFQ-----------PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEG 270 (361)
Q Consensus 202 ~v~~vl~~l~~~~~~~rv~~~Sf~-----------~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~ 270 (361)
.+..+++.-.+.+ .+++++... ..+++.+.+..+.+|+++=.+-+. ++ +.+..+.+.
T Consensus 28 ~~~aii~AAEe~~--sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~---------~~-e~i~~Ai~~ 95 (347)
T TIGR01521 28 QMRAIMEAADKTD--SPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGN---------SP-ATCQRAIQL 95 (347)
T ss_pred HHHHHHHHHHHhC--CCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCC---------CH-HHHHHHHHc
Confidence 4555655555543 356655422 123334444444578876554432 23 334556678
Q ss_pred CCcEEEcCCccc-------------cCChHHHHHHHHcCCEE
Q 040734 271 GLQGIVSEVKGV-------------FRNPGAVTKIKESKLSL 299 (361)
Q Consensus 271 ~~~~i~~~~~~~-------------~~~~~~v~~~~~~Gl~v 299 (361)
|+..+..+.+.+ ..|.+.++.+|..|+.|
T Consensus 96 GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsV 137 (347)
T TIGR01521 96 GFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASV 137 (347)
T ss_pred CCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 888888776642 23678999999988877
No 185
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=56.14 E-value=1.5e+02 Score=26.46 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCcEEEcCCccc-----cCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGV-----FRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
..+..+.....|+..+.+..... -.+-++++.+++. .++|++-|-+++.+++.+++ ..|+||++.-.
T Consensus 148 ~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~-~~Ga~gv~vg~ 220 (234)
T cd04732 148 LEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALK-ELGVAGVIVGK 220 (234)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHH-HCCCCEEEEeH
Confidence 44555556677777765542110 1234777777665 78999888899999999887 58999999754
No 186
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=55.21 E-value=1.2e+02 Score=27.21 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=40.6
Q ss_pred ChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC-----hHHHHHHHHHhc
Q 040734 285 NPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL-----VQEITEAVYDMI 339 (361)
Q Consensus 285 ~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~-----p~~~~~~l~~~~ 339 (361)
+.+++..+.+. +++|.+.|.+++.+++++++ ..|+|.|+.+. |+.+.++.+.+.
T Consensus 61 ~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~-~~Gad~vvigs~~l~dp~~~~~i~~~~g 120 (234)
T cd04732 61 NLELIEEIVKAVGIPVQVGGGIRSLEDIERLL-DLGVSRVIIGTAAVKNPELVKELLKEYG 120 (234)
T ss_pred CHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHH-HcCCCEEEECchHHhChHHHHHHHHHcC
Confidence 45677777554 68888887899999999987 69999998655 555666666654
No 187
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=54.80 E-value=63 Score=26.65 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCcEEEcCCcc---ccCChHHHHHHHHcCC---EEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKG---VFRNPGAVTKIKESKL---SLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~---~~~~~~~v~~~~~~Gl---~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
.++.++.+.+.+++.+.++... ...-+.+++.++++|. .+++=| ..-.++...+. ++|||+++.
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG-~~~~~~~~~l~-~~Gvd~~~~ 111 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGG-VIPPQDFDELK-EMGVAEIFG 111 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC-CCChHhHHHHH-HCCCCEEEC
Confidence 3444455555555555443321 0124688888999875 455543 23344566664 799999995
No 188
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=54.74 E-value=67 Score=32.71 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=56.3
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc--------c----cCC----hHHH
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG--------V----FRN----PGAV 289 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~--------~----~~~----~~~v 289 (361)
.+.++.+++..|+.|+..-.- .+.+.+ ..+...|++++...+.. + ..+ .+..
T Consensus 257 l~~i~~i~~~~p~~~vi~g~v-----------~t~e~a-~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~ 324 (486)
T PRK05567 257 LDRVREIKAKYPDVQIIAGNV-----------ATAEAA-RALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAA 324 (486)
T ss_pred HHHHHHHHhhCCCCCEEEecc-----------CCHHHH-HHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHH
Confidence 456777888888888655221 123333 34457788887432110 0 001 1223
Q ss_pred HHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 290 TKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 290 ~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
+.+++.|+.|++-|-+.++.++.+.+ .+|.|.++-..
T Consensus 325 ~~~~~~~~~viadGGi~~~~di~kAl-a~GA~~v~~G~ 361 (486)
T PRK05567 325 EAAKKYGIPVIADGGIRYSGDIAKAL-AAGASAVMLGS 361 (486)
T ss_pred HHhccCCCeEEEcCCCCCHHHHHHHH-HhCCCEEEECc
Confidence 34445689999988899999999997 69999998765
No 189
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=54.55 E-value=36 Score=30.33 Aligned_cols=68 Identities=24% Similarity=0.273 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHCCCCCE-EEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEE
Q 040734 223 TFQPDAAVLIRKLQSTYPV-FFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLT 301 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~ 301 (361)
+|.++.++++++. +++|. ..|.-..+ ...++.....|++.+..++.......++++.+|++|+++.+
T Consensus 43 ~~g~~~i~~i~~~-~~~~~DvHLMv~~P-----------~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~Gi 110 (201)
T PF00834_consen 43 TFGPDIIKAIRKI-TDLPLDVHLMVENP-----------ERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGI 110 (201)
T ss_dssp -B-HHHHHHHHTT-SSSEEEEEEESSSG-----------GGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhhc-CCCcEEEEeeeccH-----------HHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEE
Confidence 5899999999887 55554 33332221 11223345677888887776532235899999999999976
Q ss_pred e
Q 040734 302 Y 302 (361)
Q Consensus 302 w 302 (361)
.
T Consensus 111 a 111 (201)
T PF00834_consen 111 A 111 (201)
T ss_dssp E
T ss_pred E
Confidence 5
No 190
>PRK10060 RNase II stability modulator; Provisional
Probab=54.25 E-value=1.4e+02 Score=31.66 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcC-CCCEEEEcCC------H----HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHh
Q 040734 201 RVIQAILKIVFEFAE-NRPIIFSTFQ------P----DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLE 269 (361)
Q Consensus 201 ~~v~~vl~~l~~~~~-~~rv~~~Sf~------~----~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~ 269 (361)
.+++.+.+.+.+++. ..++++.--. . ..+..+++. ++.+++--.+.. ...+.+...
T Consensus 508 ~~~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~--G~~ialDdfGtg-----------~ssl~~L~~ 574 (663)
T PRK10060 508 TIFTALKQALQELNFEYCPIDVELTESCLIENEELALSVIQQFSQL--GAQVHLDDFGTG-----------YSSLSQLAR 574 (663)
T ss_pred cHHHHHHHHHHHHCcCcceEEEEECCchhhcCHHHHHHHHHHHHHC--CCEEEEECCCCc-----------hhhHHHHHh
Confidence 567777888888774 3455553222 1 223333333 444443221110 112334455
Q ss_pred cCCcEEEcCCccc----------cCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 270 GGLQGIVSEVKGV----------FRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 270 ~~~~~i~~~~~~~----------~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
..++.+-++.... .+-..++..+|..|++|++= .|.+.+++..+. .+|||.+.=-
T Consensus 575 l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAe-GVEt~~q~~~l~-~~G~d~~QGy 639 (663)
T PRK10060 575 FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAE-GVETAKEDAFLT-KNGVNERQGF 639 (663)
T ss_pred CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEe-cCCCHHHHHHHH-HcCCCEEecC
Confidence 5666655443221 11246788889999999999 699999998875 7999866543
No 191
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=54.15 E-value=93 Score=27.08 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=39.6
Q ss_pred ChHHHHHHHHcCCEEEEe-----ccCCCHHHHHHHHHhcCccEEEeCChHHHHHHHHH
Q 040734 285 NPGAVTKIKESKLSLLTY-----GRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYD 337 (361)
Q Consensus 285 ~~~~v~~~~~~Gl~v~~w-----~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~~ 337 (361)
-++.+..++++|..|++- |--|+...+++.....+.|||+|=.+..+..+.+.
T Consensus 37 ik~ivk~lK~~gK~vfiHvDLv~Gl~~~e~~i~fi~~~~~pdGIISTk~~~i~~Akk~ 94 (181)
T COG1954 37 IKEIVKKLKNRGKTVFIHVDLVEGLSNDEVAIEFIKEVIKPDGIISTKSNVIKKAKKL 94 (181)
T ss_pred HHHHHHHHHhCCcEEEEEeHHhcccCCchHHHHHHHHhccCCeeEEccHHHHHHHHHc
Confidence 478899999999999875 11245555666554567999999999998877654
No 192
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=54.05 E-value=1.4e+02 Score=27.99 Aligned_cols=88 Identities=19% Similarity=0.181 Sum_probs=52.5
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHc--CCEEEEec
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKES--KLSLLTYG 303 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~--Gl~v~~w~ 303 (361)
.+.++.+|+..|+.+++.-+ .+++++.+.+ ..+++++.++.-..-...+.++.+++. .+.+.+=|
T Consensus 171 ~~av~~~R~~~~~~~IgVev------------~t~eea~~A~-~~gaD~I~ld~~~p~~l~~~~~~~~~~~~~i~i~AsG 237 (272)
T cd01573 171 LKALARLRATAPEKKIVVEV------------DSLEEALAAA-EAGADILQLDKFSPEELAELVPKLRSLAPPVLLAAAG 237 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEc------------CCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHhccCCCceEEEEC
Confidence 45777788777765554433 2355555543 678888776521110123455555544 37777776
Q ss_pred cCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 304 RLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 304 Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
-++ ++.+..+. ..|||+|.+-.+
T Consensus 238 GI~-~~ni~~~~-~~Gvd~I~vsai 260 (272)
T cd01573 238 GIN-IENAAAYA-AAGADILVTSAP 260 (272)
T ss_pred CCC-HHHHHHHH-HcCCcEEEEChh
Confidence 674 45666665 599999987654
No 193
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=54.00 E-value=43 Score=32.60 Aligned_cols=50 Identities=20% Similarity=0.023 Sum_probs=33.7
Q ss_pred hHHHHHHHHcCCEEEEec---cCCCH-----HHHHHHHHhcCccEEEeCChHHHHHHHH
Q 040734 286 PGAVTKIKESKLSLLTYG---RLNNV-----AEAVYMQHLMGIDGVIVDLVQEITEAVY 336 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~---Tvn~~-----~~~~~~~~~~GVdgI~TD~p~~~~~~l~ 336 (361)
.+.|+.+|++|.++++=. ..++. ..+..+ .++|||+|+..+|..+.-+.+
T Consensus 52 ~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l-~e~GvDaviv~Dpg~i~l~~e 109 (347)
T COG0826 52 AEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRL-VELGVDAVIVADPGLIMLARE 109 (347)
T ss_pred HHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHH-HHcCCCEEEEcCHHHHHHHHH
Confidence 478899999999887631 11221 122334 369999999999998874443
No 194
>PRK15452 putative protease; Provisional
Probab=53.16 E-value=63 Score=32.56 Aligned_cols=51 Identities=10% Similarity=-0.102 Sum_probs=33.2
Q ss_pred hHHHHHHHHcCCEEEEe-ccCCCHHHHHH------HHHhcCccEEEeCChHHHHHHHH
Q 040734 286 PGAVTKIKESKLSLLTY-GRLNNVAEAVY------MQHLMGIDGVIVDLVQEITEAVY 336 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w-~Tvn~~~~~~~------~~~~~GVdgI~TD~p~~~~~~l~ 336 (361)
.+.++.+|++|.+|++- -++-...++.. .+..+|||||+.-.|..+.-+.+
T Consensus 49 ~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G~l~~~ke 106 (443)
T PRK15452 49 ALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPGLIMMVRE 106 (443)
T ss_pred HHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHHHHHHHHH
Confidence 35688899999999764 11222233321 12358999999999988865544
No 195
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=53.11 E-value=1.6e+02 Score=26.57 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=56.9
Q ss_pred cCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc-ccCChHHHHHHHHcCCEEEE
Q 040734 223 TFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG-VFRNPGAVTKIKESKLSLLT 301 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~-~~~~~~~v~~~~~~Gl~v~~ 301 (361)
++--++++.+|+.+|+-.+..-.... |. +.++ .+++...|++++.+.--. .-.-...++.+|+.|..+++
T Consensus 41 ~eG~~aV~~lr~~~pd~~IvAD~Kt~-----D~--G~~e--~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~i 111 (217)
T COG0269 41 AEGMRAVRALRELFPDKIIVADLKTA-----DA--GAIE--ARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQI 111 (217)
T ss_pred HhhHHHHHHHHHHCCCCeEEeeeeec-----ch--hHHH--HHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEE
Confidence 45567788899998887665432211 11 1122 355667777765433211 00124778889999998877
Q ss_pred eccC--CCHHHHHHHHHhcCccEEEeCChH
Q 040734 302 YGRL--NNVAEAVYMQHLMGIDGVIVDLVQ 329 (361)
Q Consensus 302 w~Tv--n~~~~~~~~~~~~GVdgI~TD~p~ 329 (361)
- .+ .++.+..+-++.+|+|.++--+..
T Consensus 112 D-l~~~~~~~~~~~~l~~~gvd~~~~H~g~ 140 (217)
T COG0269 112 D-LIGVWDPEQRAKWLKELGVDQVILHRGR 140 (217)
T ss_pred E-eecCCCHHHHHHHHHHhCCCEEEEEecc
Confidence 5 33 345555444445899988865443
No 196
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=52.89 E-value=76 Score=30.70 Aligned_cols=87 Identities=11% Similarity=0.015 Sum_probs=56.1
Q ss_pred HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcC--------Cccc--------cCChHHHH
Q 040734 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSE--------VKGV--------FRNPGAVT 290 (361)
Q Consensus 227 ~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~--------~~~~--------~~~~~~v~ 290 (361)
+.++++|+..|+.++..- .- .+. +....+...|++++-+. .+.+ ..-++..+
T Consensus 139 ~~ik~ir~~~p~~~viaG---NV--------~T~-e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~ 206 (343)
T TIGR01305 139 EFVKLVREAFPEHTIMAG---NV--------VTG-EMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECAD 206 (343)
T ss_pred HHHHHHHhhCCCCeEEEe---cc--------cCH-HHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHH
Confidence 567777777776544321 11 112 22334456788887433 1111 01135666
Q ss_pred HHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 291 KIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 291 ~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
.++..|.+|++-|-+....++.+.+ .+|.|+||-.
T Consensus 207 aa~~~~v~VIaDGGIr~~gDI~KAL-A~GAd~VMlG 241 (343)
T TIGR01305 207 AAHGLKGHIISDGGCTCPGDVAKAF-GAGADFVMLG 241 (343)
T ss_pred HhccCCCeEEEcCCcCchhHHHHHH-HcCCCEEEEC
Confidence 6777789999998899999999987 6999999988
No 197
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=52.74 E-value=76 Score=26.15 Aligned_cols=67 Identities=22% Similarity=0.236 Sum_probs=39.8
Q ss_pred cHHHHHHHHHhcCCcEEEcCCcc---ccCChHHHHHHHHcCC-E--EEEeccC-CCHHH----HHHHHHhcCccEEEeC
Q 040734 259 SLEEAVKVCLEGGLQGIVSEVKG---VFRNPGAVTKIKESKL-S--LLTYGRL-NNVAE----AVYMQHLMGIDGVIVD 326 (361)
Q Consensus 259 ~l~~~~~~~~~~~~~~i~~~~~~---~~~~~~~v~~~~~~Gl-~--v~~w~Tv-n~~~~----~~~~~~~~GVdgI~TD 326 (361)
+.++.++.+.+.+++.+.++.-. ...-+++++.++++|+ . |++=|.+ -.+.+ ..++ +++|||.|++-
T Consensus 38 ~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L-~~~Gv~~vf~p 115 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRF-KEMGFDRVFAP 115 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHH-HHcCCCEEECc
Confidence 45666777777777766654321 1123688889999986 3 3333221 12222 2345 57999999973
No 198
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=52.44 E-value=2.2e+02 Score=27.85 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc-ccC-----ChHHHHHHH-Hc
Q 040734 223 TFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG-VFR-----NPGAVTKIK-ES 295 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~-~~~-----~~~~v~~~~-~~ 295 (361)
++.++.++++++..|. |+..- +- .+.++ ...+...|+++|.+.... -.. +-+.+..+. ..
T Consensus 222 ~~~w~~i~~ir~~~~~-pviiK--gV---------~~~ed-a~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~ 288 (361)
T cd04736 222 SFNWQDLRWLRDLWPH-KLLVK--GI---------VTAED-AKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT 288 (361)
T ss_pred cCCHHHHHHHHHhCCC-CEEEe--cC---------CCHHH-HHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh
Confidence 5788899999998754 44321 11 12333 345667899987644321 111 123333343 34
Q ss_pred CCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 296 KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 296 Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
++.|++-|-|.+..++.+.+ .+|.++|+.-+|-..
T Consensus 289 ~~~vi~dGGIr~g~Dv~KAL-aLGA~aV~iGr~~l~ 323 (361)
T cd04736 289 YKPVLIDSGIRRGSDIVKAL-ALGANAVLLGRATLY 323 (361)
T ss_pred CCeEEEeCCCCCHHHHHHHH-HcCCCEEEECHHHHH
Confidence 79999998899999999987 699999999988764
No 199
>PRK08005 epimerase; Validated
Probab=52.43 E-value=1.5e+02 Score=26.65 Aligned_cols=79 Identities=10% Similarity=0.082 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCcEEEcCCc------cccCChHHHHHHHHcC---CEEEEeccCCCHHHHHHHHHhcCccEEE-----e
Q 040734 260 LEEAVKVCLEGGLQGIVSEVK------GVFRNPGAVTKIKESK---LSLLTYGRLNNVAEAVYMQHLMGIDGVI-----V 325 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~------~~~~~~~~v~~~~~~G---l~v~~w~Tvn~~~~~~~~~~~~GVdgI~-----T 325 (361)
+.+-++.....|++.+|++.- .+...+..++.+++.- +.|+.- |.+++.+.+.+...|+|.|+ |
T Consensus 15 l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLM--v~~P~~~i~~~~~~gad~It~H~Ea~ 92 (210)
T PRK08005 15 YAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLM--VSSPQRWLPWLAAIRPGWIFIHAESV 92 (210)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEec--cCCHHHHHHHHHHhCCCEEEEcccCc
Confidence 555566666778888776641 1123578888887743 445555 55666654433468999776 4
Q ss_pred CChHHHHHHHHHhcC
Q 040734 326 DLVQEITEAVYDMIK 340 (361)
Q Consensus 326 D~p~~~~~~l~~~~~ 340 (361)
+++..+.+.+++.+.
T Consensus 93 ~~~~~~l~~Ik~~G~ 107 (210)
T PRK08005 93 QNPSEILADIRAIGA 107 (210)
T ss_pred cCHHHHHHHHHHcCC
Confidence 566666677666543
No 200
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=51.95 E-value=2.1e+02 Score=26.90 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=46.5
Q ss_pred hHHHHHHHHc--CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC--hHHHHHHHHHhc--CCcccccccCcccc
Q 040734 286 PGAVTKIKES--KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL--VQEITEAVYDMI--KPAKVVEKEDNKSL 353 (361)
Q Consensus 286 ~~~v~~~~~~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~--p~~~~~~l~~~~--~~~~~~~~~~~~~~ 353 (361)
.+.++.++++ +.++.+= +.+.++..+.+ +.|+|.|+-|. |+.+.+.++... .+....+.+|+..+
T Consensus 176 ~~av~~~r~~~~~~kIeVE--v~tleea~ea~-~~GaDiI~lDn~~~e~l~~~v~~l~~~~~~~~leasGGI~~ 246 (277)
T TIGR01334 176 GGAIGRLKQTAPERKITVE--ADTIEQALTVL-QASPDILQLDKFTPQQLHHLHERLKFFDHIPTLAAAGGINP 246 (277)
T ss_pred HHHHHHHHHhCCCCCEEEE--CCCHHHHHHHH-HcCcCEEEECCCCHHHHHHHHHHHhccCCCEEEEEECCCCH
Confidence 3677888876 4666665 67888888887 69999999996 777788777653 45555566665543
No 201
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=51.83 E-value=1.8e+02 Score=25.98 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 262 EAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
+-.+.+...|+++++.... ++++++.++..|+.+..= +.+++++.+.. .+|+|.|.- +|
T Consensus 74 ~~~~~a~~aGA~fivsp~~----~~~v~~~~~~~~~~~~~G--~~t~~E~~~A~-~~Gad~vk~-Fp 132 (206)
T PRK09140 74 EQVDRLADAGGRLIVTPNT----DPEVIRRAVALGMVVMPG--VATPTEAFAAL-RAGAQALKL-FP 132 (206)
T ss_pred HHHHHHHHcCCCEEECCCC----CHHHHHHHHHCCCcEEcc--cCCHHHHHHHH-HcCCCEEEE-CC
Confidence 3456778899999987643 789999999999876654 67888888876 699998864 44
No 202
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=51.57 E-value=26 Score=32.47 Aligned_cols=44 Identities=14% Similarity=0.287 Sum_probs=30.4
Q ss_pred ChHHHHHHHHcCCEEEEeccCCCHHH-----HHHHHHhcCccEEEeCChH
Q 040734 285 NPGAVTKIKESKLSLLTYGRLNNVAE-----AVYMQHLMGIDGVIVDLVQ 329 (361)
Q Consensus 285 ~~~~v~~~~~~Gl~v~~w~Tvn~~~~-----~~~~~~~~GVdgI~TD~p~ 329 (361)
.+++|+.+|++|++|.+| +---..+ +++++.++||||+-+|.-+
T Consensus 68 p~~~i~~l~~~g~~~~~~-~~P~v~~w~~~~~~~~~~~~Gvdg~w~D~~E 116 (265)
T cd06589 68 PKSMIDELHDNGVKLVLW-IDPYIREWWAEVVKKLLVSLGVDGFWTDMGE 116 (265)
T ss_pred HHHHHHHHHHCCCEEEEE-eChhHHHHHHHHHHHhhccCCCCEEeccCCC
Confidence 468999999999999999 4222211 1222235799999998744
No 203
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.90 E-value=1.4e+02 Score=28.68 Aligned_cols=104 Identities=16% Similarity=0.062 Sum_probs=59.1
Q ss_pred HHHHHHHHHHC-CCCCEEEEccCCCccccccccccHHHHH---HHHHhcCCcEEEcCCccc---cC--------------
Q 040734 226 PDAAVLIRKLQ-STYPVFFLTNGGTEIFYDVRRNSLEEAV---KVCLEGGLQGIVSEVKGV---FR-------------- 284 (361)
Q Consensus 226 ~~~l~~l~~~~-p~~~~~~l~~~~~~~~~d~~~~~l~~~~---~~~~~~~~~~i~~~~~~~---~~-------------- 284 (361)
.++++.+|+.. +++++++-.......... .+.++.+ +...+.+++.+.++.... ..
T Consensus 203 ~EiI~aIR~avG~d~~v~vris~~~~~~~g---~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ 279 (338)
T cd04733 203 LEIYDAIRAAVGPGFPVGIKLNSADFQRGG---FTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAY 279 (338)
T ss_pred HHHHHHHHHHcCCCCeEEEEEcHHHcCCCC---CCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchh
Confidence 46777787766 357776644321100000 1233333 344566777776432210 00
Q ss_pred ChHHHHHHHH-cCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHH
Q 040734 285 NPGAVTKIKE-SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEIT 332 (361)
Q Consensus 285 ~~~~v~~~~~-~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~ 332 (361)
..+..+.+++ -++.|++=+.+++++++++++..-++|.|.--++-.+.
T Consensus 280 ~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iad 328 (338)
T cd04733 280 FLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALE 328 (338)
T ss_pred hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhC
Confidence 0145556655 37888776689999999999843349999877665543
No 204
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=50.59 E-value=18 Score=33.82 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=30.2
Q ss_pred ccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 71 KENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 71 pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
.-|-..++...++.|+.++|+||+.. ++.+.++|....
T Consensus 40 ~~nQ~~sI~~QL~~GvR~LdLdv~~~-~~~l~v~Hg~~~ 77 (267)
T cd08590 40 DPNQELSITDQLDLGARFLELDVHWT-TGDLRLCHGGDH 77 (267)
T ss_pred ccccCcCHHHHHhhCCcEEEEeeeeC-CCCEEEEccCcc
Confidence 34556688999999999999999976 577788886543
No 205
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=49.95 E-value=49 Score=30.08 Aligned_cols=57 Identities=25% Similarity=0.246 Sum_probs=40.8
Q ss_pred cCCcEEEcCCcc---ccCChHHHHHHHHc--CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 270 GGLQGIVSEVKG---VFRNPGAVTKIKES--KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 270 ~~~~~i~~~~~~---~~~~~~~v~~~~~~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
+|+..+=+.+.. ..+++++++.+++. ++.+.+=|.+.+.++++.++ .+|+|+|++-.
T Consensus 148 ~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~-~aGAD~VVVGs 209 (223)
T TIGR01768 148 LGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMA-EAGADTIVTGN 209 (223)
T ss_pred cCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHH-HcCCCEEEECc
Confidence 455544444321 12468999999875 67886655799999999987 68999999755
No 206
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=49.82 E-value=1.3e+02 Score=27.35 Aligned_cols=80 Identities=11% Similarity=-0.063 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCcEEEcCCc------cccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEE-----eCCh
Q 040734 260 LEEAVKVCLEGGLQGIVSEVK------GVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVI-----VDLV 328 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~------~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~-----TD~p 328 (361)
+.+-++.....|++.+|++.- .+...+..++.+++ .+.+-+---+.+++.+.+.+...|+|.|+ |+++
T Consensus 27 l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~-~~~~DvHLMv~~P~~~i~~~~~aGad~It~H~Ea~~~~ 105 (228)
T PRK08091 27 FNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPT-HCFKDVHLMVRDQFEVAKACVAAGADIVTLQVEQTHDL 105 (228)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCC-CCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccH
Confidence 444445555666666665531 11124666777753 43332222245555543333357777665 4445
Q ss_pred HHHHHHHHHhcC
Q 040734 329 QEITEAVYDMIK 340 (361)
Q Consensus 329 ~~~~~~l~~~~~ 340 (361)
..+.+.+++.+.
T Consensus 106 ~~~l~~Ik~~g~ 117 (228)
T PRK08091 106 ALTIEWLAKQKT 117 (228)
T ss_pred HHHHHHHHHCCC
Confidence 555555555543
No 207
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=49.77 E-value=2.4e+02 Score=26.95 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCCH-----------HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHh
Q 040734 201 RVIQAILKIVFEFAENRPIIFSTFQP-----------DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLE 269 (361)
Q Consensus 201 ~~v~~vl~~l~~~~~~~rv~~~Sf~~-----------~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~ 269 (361)
..+..+++.-++.+ .+++++.... .+++.+.+..+.+|+++=.+-+. ++ +.+..+.+
T Consensus 28 e~~~avi~AAe~~~--sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~---------~~-e~i~~ai~ 95 (307)
T PRK05835 28 EMLNAIFEAGNEEN--SPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGT---------TF-ESCEKAVK 95 (307)
T ss_pred HHHHHHHHHHHHHC--CCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCC---------CH-HHHHHHHH
Confidence 35666666666553 4567664321 23333444444578876554432 23 33455667
Q ss_pred cCCcEEEcCCccc------cCChHHHHHHHHcCCEEEE----e-cc------------CCCHHHHHHHHHhcCccEE
Q 040734 270 GGLQGIVSEVKGV------FRNPGAVTKIKESKLSLLT----Y-GR------------LNNVAEAVYMQHLMGIDGV 323 (361)
Q Consensus 270 ~~~~~i~~~~~~~------~~~~~~v~~~~~~Gl~v~~----w-~T------------vn~~~~~~~~~~~~GVdgI 323 (361)
.|+..+..+.+.+ -.|.+.++.+|.+|+.|=+ - +. .-++++..++....|||.+
T Consensus 96 ~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~L 172 (307)
T PRK05835 96 AGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYL 172 (307)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEE
Confidence 8998888776653 2467999999999988721 0 00 1246778787766787744
No 208
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=49.76 E-value=1.8e+02 Score=25.53 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=32.5
Q ss_pred hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 286 PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
..+++.++..|+.|++= -|++.++...+. .+|||++.=.
T Consensus 193 ~~l~~~~~~~~~~via~-gVe~~~~~~~l~-~~Gi~~~QG~ 231 (241)
T smart00052 193 QSIIELAQKLGLQVVAE-GVETPEQLDLLR-SLGCDYGQGY 231 (241)
T ss_pred HHHHHHHHHCCCeEEEe-cCCCHHHHHHHH-HcCCCEEeec
Confidence 46678889999999999 699999998885 7999977543
No 209
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=49.68 E-value=2.3e+02 Score=26.72 Aligned_cols=140 Identities=14% Similarity=0.138 Sum_probs=80.3
Q ss_pred ccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC-------HHH----HHHHHH
Q 040734 166 LCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQ-------PDA----AVLIRK 234 (361)
Q Consensus 166 iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~-------~~~----l~~l~~ 234 (361)
+.++.|+|+....+-.-..=+-..+. ..+..+++..++.+ .+++++... ... ++.+.+
T Consensus 3 lv~~k~ll~~A~~~~yaV~AfN~~n~---------e~~~avi~AAe~~~--sPvIl~~~~~~~~~~g~~~~~~~~~~~A~ 71 (283)
T PRK07998 3 LVNGRILLDRIQEKHVLAGAFNTTNL---------ETTISILNAIERSG--LPNFIQIAPTNAQLSGYDYIYEIVKRHAD 71 (283)
T ss_pred CCcHHHHHHHHHHCCCEEEEEeeCCH---------HHHHHHHHHHHHhC--CCEEEECcHhHHhhCCHHHHHHHHHHHHH
Confidence 45677888776532111111111111 35566666666553 457776532 121 122222
Q ss_pred HCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc------cCChHHHHHHHHcCCEE-EEeccC--
Q 040734 235 LQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV------FRNPGAVTKIKESKLSL-LTYGRL-- 305 (361)
Q Consensus 235 ~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~------~~~~~~v~~~~~~Gl~v-~~w~Tv-- 305 (361)
...+|+++=.+.+. .+ +.+..+.+.|+..+..+.+.+ -.+.+.++.+|..|+.| .=+|.+
T Consensus 72 -~~~vPV~lHLDH~~---------~~-e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg 140 (283)
T PRK07998 72 -KMDVPVSLHLDHGK---------TF-EDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILG 140 (283)
T ss_pred -HCCCCEEEECcCCC---------CH-HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCC
Confidence 24678876554332 23 234456678998888776543 23679999999999988 223222
Q ss_pred ------------CCHHHHHHHHHhcCccEEEeCC
Q 040734 306 ------------NNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 306 ------------n~~~~~~~~~~~~GVdgI~TD~ 327 (361)
-++++..++....|||.+-...
T Consensus 141 ~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvai 174 (283)
T PRK07998 141 KEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSI 174 (283)
T ss_pred ccccccccccccCCHHHHHHHHHHhCcCeeehhc
Confidence 2677788887678999777666
No 210
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=49.50 E-value=33 Score=30.33 Aligned_cols=58 Identities=9% Similarity=-0.048 Sum_probs=39.7
Q ss_pred HHhcCCcEEEcCCccc---------cCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 267 CLEGGLQGIVSEVKGV---------FRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 267 ~~~~~~~~i~~~~~~~---------~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
.....++++-++...+ ..-..+++.+++.|+.|++- .|++.++...+. .+|||.+.=+
T Consensus 165 l~~l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~-gVe~~~~~~~l~-~~G~~~~QG~ 231 (236)
T PF00563_consen 165 LASLPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAE-GVESEEQLELLK-ELGVDYIQGY 231 (236)
T ss_dssp HHHHCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEE-CE-SHHHHHHHH-HTTESEEEST
T ss_pred hhhcccccceeecccccccchhhHHHHHHHHHHHhhcccccccee-ecCCHHHHHHHH-HcCCCEEEeC
Confidence 3445566665554332 01236788999999999999 699999998885 7999987644
No 211
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=49.47 E-value=1.1e+02 Score=29.89 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=40.2
Q ss_pred ChHHHHHHHHcCCEEEEeccCCCHHHHHHHHH--hcCccEEE--eCChHHHHHHHHHhcC
Q 040734 285 NPGAVTKIKESKLSLLTYGRLNNVAEAVYMQH--LMGIDGVI--VDLVQEITEAVYDMIK 340 (361)
Q Consensus 285 ~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~--~~GVdgI~--TD~p~~~~~~l~~~~~ 340 (361)
-..+|..++..+-++++- +++.++++-++. +.|+|||+ |+.|..+.++..-...
T Consensus 112 lEnliA~~~~~~~~i~a~--v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 112 LENLIAALQGSSTKIIAV--VADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred HHHHHHHhcCCCceEEEE--eCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 356777787788888877 788888765432 47999998 7889998887765443
No 212
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=49.12 E-value=1.6e+02 Score=33.56 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=66.3
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCc-cccccccccHHHHHHHHHhcCCcEEEcCC--ccccCChHHHHHHHHcCCEE---
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTE-IFYDVRRNSLEEAVKVCLEGGLQGIVSEV--KGVFRNPGAVTKIKESKLSL--- 299 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~-~~~d~~~~~l~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~~~~Gl~v--- 299 (361)
|+-|+.+|+..|+.+...|..+... -|.....+-+...++.+.+.|++.+-+-- +++---...++.+++.|..+
T Consensus 592 werl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~ 671 (1143)
T TIGR01235 592 WERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAA 671 (1143)
T ss_pred HHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 5678889999999998777665432 12222233355666777788887654321 11111246788899999887
Q ss_pred EEeccC---------CCHH---HHHHHHHhcCccEEE-eCC-----hHHHHHHHHHh
Q 040734 300 LTYGRL---------NNVA---EAVYMQHLMGIDGVI-VDL-----VQEITEAVYDM 338 (361)
Q Consensus 300 ~~w~Tv---------n~~~---~~~~~~~~~GVdgI~-TD~-----p~~~~~~l~~~ 338 (361)
.+| |- .+.+ ++.+.+.++|+|.|. .|- |..+.+.+..+
T Consensus 672 i~y-t~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~l 727 (1143)
T TIGR01235 672 ICY-TGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKAL 727 (1143)
T ss_pred EEE-eccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHH
Confidence 567 62 1222 222223468999876 343 55555555443
No 213
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=49.04 E-value=91 Score=27.95 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHc--CCEEEEec--cCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKES--KLSLLTYG--RLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~--Gl~v~~w~--Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
+.+.++.....+++++.+. ++..+..+++. +++|++-. .+.+...++.+. ++|++.|+-..--.+
T Consensus 4 ~~~~l~~l~~~g~dgi~v~------~~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~-~~G~~~i~ls~EL~~ 72 (233)
T PF01136_consen 4 LEKYLDKLKELGVDGILVS------NPGLLELLKELGPDLKIIADYSLNVFNSESARFLK-ELGASRITLSPELSL 72 (233)
T ss_pred HHHHHHHHHhCCCCEEEEc------CHHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHH-HcCCCEEEECccCCH
Confidence 4555667778888887643 77888999998 66776531 245677776664 689998887654433
No 214
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=48.21 E-value=32 Score=37.04 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=57.4
Q ss_pred cccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccC------CCHHHHHHHHHhcCccEEE-eCChH
Q 040734 257 RNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRL------NNVAEAVYMQHLMGIDGVI-VDLVQ 329 (361)
Q Consensus 257 ~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tv------n~~~~~~~~~~~~GVdgI~-TD~p~ 329 (361)
+.++++++..|+..|++.|++.|..+.-+++|.+++.++|+.++.= +. .+.-..+.+....||-.|- ||-|.
T Consensus 66 YL~IdeII~iAk~~gaDaIhPGYGfLSEn~efA~~c~eaGI~FIGP-~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~ 144 (1149)
T COG1038 66 YLSIDEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIGP-KPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPI 144 (1149)
T ss_pred hccHHHHHHHHHHcCCCeecCCcccccCCHHHHHHHHHcCCEEeCC-CHHHHHHhccHHHHHHHHHHcCCCccCCCCCCc
Confidence 3568999999999999999999998878999999999999976543 21 1222222222357877665 45443
Q ss_pred H----HHHHHHHhcCCc
Q 040734 330 E----ITEAVYDMIKPA 342 (361)
Q Consensus 330 ~----~~~~l~~~~~~~ 342 (361)
. +.++-+..+=|-
T Consensus 145 ~~~ee~~~fa~~~gyPv 161 (1149)
T COG1038 145 ETIEEALEFAEEYGYPV 161 (1149)
T ss_pred ccHHHHHHHHHhcCCcE
Confidence 3 444444444443
No 215
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=47.94 E-value=64 Score=30.72 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCcEEEcCCccc------cCChHHHHHHHH-cCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC-----
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGV------FRNPGAVTKIKE-SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL----- 327 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~------~~~~~~v~~~~~-~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~----- 327 (361)
..+.++.....|+..+.++.+.. ..+-+.+..+++ ..+.|++-|-|.+.+++.+++...|+||||.-+
T Consensus 140 ~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~n 219 (309)
T PF01207_consen 140 TIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGN 219 (309)
T ss_dssp HHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-
T ss_pred HHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhc
Confidence 44556667788888887776432 112245555543 459999999999999999887445999999754
Q ss_pred hHHHH
Q 040734 328 VQEIT 332 (361)
Q Consensus 328 p~~~~ 332 (361)
|..+.
T Consensus 220 P~lf~ 224 (309)
T PF01207_consen 220 PWLFR 224 (309)
T ss_dssp CCHHC
T ss_pred CHHhh
Confidence 55555
No 216
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=47.92 E-value=2.2e+02 Score=25.94 Aligned_cols=83 Identities=14% Similarity=0.041 Sum_probs=51.3
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCC---ccccCChHHHHHHHHcCCEEEEe
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEV---KGVFRNPGAVTKIKESKLSLLTY 302 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~---~~~~~~~~~v~~~~~~Gl~v~~w 302 (361)
.+.++.+++. .++|+.+.+.... . .....+.++.+...|++++.++. ...--..++++.++++|+++..-
T Consensus 63 ~~~v~~vr~~-~~~Pl~lM~y~n~-----~-~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~ 135 (244)
T PRK13125 63 WPLLEEVRKD-VSVPIILMTYLED-----Y-VDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFF 135 (244)
T ss_pred HHHHHHHhcc-CCCCEEEEEecch-----h-hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 7788888854 6788754432211 1 12355556777889999988762 11111347889999999999776
Q ss_pred ccCCC-HHHHHHHH
Q 040734 303 GRLNN-VAEAVYMQ 315 (361)
Q Consensus 303 ~Tvn~-~~~~~~~~ 315 (361)
-+-.+ .+.++.++
T Consensus 136 v~p~T~~e~l~~~~ 149 (244)
T PRK13125 136 TSPKFPDLLIHRLS 149 (244)
T ss_pred ECCCCCHHHHHHHH
Confidence 23333 44555554
No 217
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=47.38 E-value=91 Score=30.97 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=56.9
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCc-cccccccccHHHHHHHHHhcCCcEEEcCCcccc---CChHHHHHHHHcCCEE--
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTE-IFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF---RNPGAVTKIKESKLSL-- 299 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~-~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~---~~~~~v~~~~~~Gl~v-- 299 (361)
|+-|+.+|+..|+-+...|..+... -+.+....-++..++.+.++|++.+-+- .-+. --...++.+++.|..+
T Consensus 65 WeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiF-DAlND~RNl~~ai~a~kk~G~h~q~ 143 (472)
T COG5016 65 WERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIF-DALNDVRNLKTAIKAAKKHGAHVQG 143 (472)
T ss_pred HHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEec-hhccchhHHHHHHHHHHhcCceeEE
Confidence 5678899999888776444433221 1111112235566677778887765321 1110 0135678889999877
Q ss_pred -EEecc---CCCHHHH----HHHHHhcCccEEEeC
Q 040734 300 -LTYGR---LNNVAEA----VYMQHLMGIDGVIVD 326 (361)
Q Consensus 300 -~~w~T---vn~~~~~----~~~~~~~GVdgI~TD 326 (361)
.+| | +.+.+-+ ++++ ++|||.|+--
T Consensus 144 ~i~Y-T~sPvHt~e~yv~~akel~-~~g~DSIciK 176 (472)
T COG5016 144 TISY-TTSPVHTLEYYVELAKELL-EMGVDSICIK 176 (472)
T ss_pred EEEe-ccCCcccHHHHHHHHHHHH-HcCCCEEEee
Confidence 457 4 4444433 3343 6999999853
No 218
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=47.14 E-value=32 Score=25.34 Aligned_cols=33 Identities=9% Similarity=0.228 Sum_probs=22.4
Q ss_pred hcCCcEEEcCCccccCChHHHHHHHHcCCEEEEec
Q 040734 269 EGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYG 303 (361)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~ 303 (361)
..+...+.++.... +++.|..+|++|.+|++|-
T Consensus 24 ~~~~~v~~iD~~~~--~~~~I~~L~~~G~~vicY~ 56 (74)
T PF03537_consen 24 DPDVDVVVIDLFDF--SKEEIARLKAQGKKVICYF 56 (74)
T ss_dssp TSS-SEEEE-SBS----HHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEECCccC--CHHHHHHHHHCCCEEEEEE
Confidence 35666777665543 7899999999999999983
No 219
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=47.01 E-value=1.9e+02 Score=25.08 Aligned_cols=114 Identities=19% Similarity=0.087 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCCCEEEEcCCH---HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc
Q 040734 206 ILKIVFEFAENRPIIFSTFQP---DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV 282 (361)
Q Consensus 206 vl~~l~~~~~~~rv~~~Sf~~---~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~ 282 (361)
+++.+.+.|. +-+.+..-++ +.++.+++.+|++.++--+-. ..+..+.+...|.++++....
T Consensus 21 ~~~~l~~~G~-~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~------------~~~~~~~a~~~Ga~~i~~p~~-- 85 (190)
T cd00452 21 LAEALIEGGI-RAIEITLRTPGALEAIRALRKEFPEALIGAGTVL------------TPEQADAAIAAGAQFIVSPGL-- 85 (190)
T ss_pred HHHHHHHCCC-CEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCC------------CHHHHHHHHHcCCCEEEcCCC--
Confidence 3444444453 2344444343 466667777776555432211 123345677889999986542
Q ss_pred cCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC-hHHHHHHHHHhc
Q 040734 283 FRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL-VQEITEAVYDMI 339 (361)
Q Consensus 283 ~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~-p~~~~~~l~~~~ 339 (361)
++++++..++.|..+.+= +.+++++.+.+ +.|+|.|..+. +....++++...
T Consensus 86 --~~~~~~~~~~~~~~~i~g--v~t~~e~~~A~-~~Gad~i~~~p~~~~g~~~~~~l~ 138 (190)
T cd00452 86 --DPEVVKAANRAGIPLLPG--VATPTEIMQAL-ELGADIVKLFPAEAVGPAYIKALK 138 (190)
T ss_pred --CHHHHHHHHHcCCcEECC--cCCHHHHHHHH-HCCCCEEEEcCCcccCHHHHHHHH
Confidence 689999999999887653 56888888886 69999998752 222345555543
No 220
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=46.97 E-value=2.5e+02 Score=26.43 Aligned_cols=40 Identities=28% Similarity=0.407 Sum_probs=31.9
Q ss_pred ChHHHHHHHHc-CCEEE--EeccCCCHHHHHHHHHhcCccEEEe
Q 040734 285 NPGAVTKIKES-KLSLL--TYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 285 ~~~~v~~~~~~-Gl~v~--~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
..++++.+.+. +++|+ +-|-+.+++++..++ ..|+|||..
T Consensus 182 d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~-e~GAdgVaV 224 (283)
T cd04727 182 PYELVKETAKLGRLPVVNFAAGGVATPADAALMM-QLGADGVFV 224 (283)
T ss_pred CHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHH-HcCCCEEEE
Confidence 45778888775 58886 777788999999987 699999874
No 221
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=46.92 E-value=1.2e+02 Score=27.72 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=46.7
Q ss_pred cHHHHHHHHHhcCCcEEEcCCccccCC----hHHHHHHHHcCCEEEEeccC--------CCHHHHH----HHHHhcCccE
Q 040734 259 SLEEAVKVCLEGGLQGIVSEVKGVFRN----PGAVTKIKESKLSLLTYGRL--------NNVAEAV----YMQHLMGIDG 322 (361)
Q Consensus 259 ~l~~~~~~~~~~~~~~i~~~~~~~~~~----~~~v~~~~~~Gl~v~~w~Tv--------n~~~~~~----~~~~~~GVdg 322 (361)
.+++.++.|+.+|++.|-++...+-++ .++|+.+++.|++|.+=-.. -++.++. +.+ +.|++.
T Consensus 72 ~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~L-eAGA~~ 150 (237)
T TIGR03849 72 KFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDL-EAGADY 150 (237)
T ss_pred hHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHH-HCCCcE
Confidence 367778899999999988776654333 37899999999998752111 1233332 234 689999
Q ss_pred EEeCC
Q 040734 323 VIVDL 327 (361)
Q Consensus 323 I~TD~ 327 (361)
||.+-
T Consensus 151 ViiEa 155 (237)
T TIGR03849 151 VIIEG 155 (237)
T ss_pred EEEee
Confidence 98776
No 222
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=46.75 E-value=24 Score=32.36 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=30.9
Q ss_pred cchHHHHHHHHhCCCCEEEEeeeeec-CCcEEEEcCCCc
Q 040734 72 ENSIASFNSSAKYPLDFIEFDVQVTK-DGWPVIFHDDVI 109 (361)
Q Consensus 72 ENTl~Af~~A~~~Gad~vE~DV~lTk-Dg~~Vv~HD~~l 109 (361)
.|--..+...++.|+.++|+||+... ++.+.++|....
T Consensus 37 ~~Q~~~i~~QL~~GiR~~dlr~~~~~~~~~~~~~H~~~~ 75 (271)
T cd08557 37 KTQDLSITDQLDAGVRYLDLRVAYDPDDGDLYVCHGLFL 75 (271)
T ss_pred hccCCCHHHHHhcCceEEEEEeeeecCCCcEEEEccccc
Confidence 34445788899999999999999987 789999996443
No 223
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=46.60 E-value=2.5e+02 Score=26.32 Aligned_cols=51 Identities=12% Similarity=0.262 Sum_probs=37.2
Q ss_pred HHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeC-----ChHHHHHHHHHh
Q 040734 287 GAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD-----LVQEITEAVYDM 338 (361)
Q Consensus 287 ~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD-----~p~~~~~~l~~~ 338 (361)
+.+..++++ ++.|+.=|-+.+.+++.+++ ..|+|+|+.= .|..+.++.+.+
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~~~~da~~~l-~aGAd~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 224 RMVYQVYQAVDIPIIGMGGISSAEDAIEFI-MAGASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred HHHHHHHHhCCCCEEEECCCCCHHHHHHHH-HcCCCceeEcHHHhcCcHHHHHHHHHH
Confidence 566777665 78888777899999999997 5899987643 455555555443
No 224
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=46.11 E-value=2.3e+02 Score=26.50 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=35.3
Q ss_pred HHHHHHHH-cCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC-----hHHHHHHHHH
Q 040734 287 GAVTKIKE-SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL-----VQEITEAVYD 337 (361)
Q Consensus 287 ~~v~~~~~-~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~-----p~~~~~~l~~ 337 (361)
+.+..+++ .++.|+.=|-|.+.+++.+++ ..|+|+|+.-+ |..+.++.+.
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~s~~da~~~l-~~GAd~V~igr~~l~~p~~~~~i~~~ 279 (300)
T TIGR01037 224 RMVYDVYKMVDIPIIGVGGITSFEDALEFL-MAGASAVQVGTAVYYRGFAFKKIIEG 279 (300)
T ss_pred HHHHHHHhcCCCCEEEECCCCCHHHHHHHH-HcCCCceeecHHHhcCchHHHHHHHH
Confidence 45556655 478888766899999999998 58999987654 4444444443
No 225
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=46.09 E-value=76 Score=29.24 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=42.3
Q ss_pred cHHHHHHHHHhcCCcEEEcCCccccCC----hHHHHHHHHcCCEEEEeccCCC--------HH----HHHHHHHhcCccE
Q 040734 259 SLEEAVKVCLEGGLQGIVSEVKGVFRN----PGAVTKIKESKLSLLTYGRLNN--------VA----EAVYMQHLMGIDG 322 (361)
Q Consensus 259 ~l~~~~~~~~~~~~~~i~~~~~~~~~~----~~~v~~~~~~Gl~v~~w~Tvn~--------~~----~~~~~~~~~GVdg 322 (361)
.+++.++.++.+|++.|-++-...-++ .++|+.+++.|++|.+=-.-.+ +. .+++.+ +.|++.
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dL-eAGA~~ 163 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDL-EAGADK 163 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHH-HHTECE
T ss_pred hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCCCchhcccCCHHHHHHHHHHHH-HCCCCE
Confidence 467888999999999988776654333 3889999999999987311111 11 233344 589999
Q ss_pred EEeCCh
Q 040734 323 VIVDLV 328 (361)
Q Consensus 323 I~TD~p 328 (361)
||.+--
T Consensus 164 ViiEar 169 (244)
T PF02679_consen 164 VIIEAR 169 (244)
T ss_dssp EEE--T
T ss_pred EEEeee
Confidence 998643
No 226
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=45.86 E-value=2.1e+02 Score=26.43 Aligned_cols=72 Identities=14% Similarity=0.073 Sum_probs=42.6
Q ss_pred HHHHHhcCCcEEEcCCccccCC----hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe---CChHHHHHHHH
Q 040734 264 VKVCLEGGLQGIVSEVKGVFRN----PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV---DLVQEITEAVY 336 (361)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~~----~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T---D~p~~~~~~l~ 336 (361)
.+.+-..|++++.++...-..+ ..++..++..|+...+=-..+++..+.+.+ +.|++||+. +.++.++++++
T Consensus 33 ~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r~L-D~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 33 TEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKRLL-DIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred HHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHh-CCCCCeeeecCcCCHHHHHHHHH
Confidence 3445566677766665432122 355667777777766642345666677776 688888885 44444454444
No 227
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=45.36 E-value=84 Score=30.83 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCcEEEcCCccc-------c-CChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGV-------F-RNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~-------~-~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
..+..+.+.+.+++.+.++.+.. . ....+++.+++.++.|++ +.+-+.+...+++ +.|+|+|+..
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~-~aGAD~V~VG 215 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLM-RTGAAGVLVG 215 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHH-HcCCCEEEEC
Confidence 34555666788888888754210 0 123567777888999988 4688888888887 5999998654
No 228
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=45.28 E-value=2.7e+02 Score=26.25 Aligned_cols=111 Identities=16% Similarity=0.236 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCC-------HH----HHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHh
Q 040734 201 RVIQAILKIVFEFAENRPIIFSTFQ-------PD----AAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLE 269 (361)
Q Consensus 201 ~~v~~vl~~l~~~~~~~rv~~~Sf~-------~~----~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~ 269 (361)
..+..+++.-.+.+ .+++++... .+ .+..+.+. ..+|+++=.+-+. ++ +.+..+.+
T Consensus 29 e~~~avi~AAee~~--sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~-~~VPValHLDH~~---------~~-e~i~~ai~ 95 (284)
T PRK12737 29 ETLQVVVETAAELR--SPVILAGTPGTFSYAGTDYIVAIAEVAARK-YNIPLALHLDHHE---------DL-DDIKKKVR 95 (284)
T ss_pred HHHHHHHHHHHHhC--CCEEEEcCccHHhhCCHHHHHHHHHHHHHH-CCCCEEEECCCCC---------CH-HHHHHHHH
Confidence 34566666655553 356665432 11 22223333 2678776544332 22 34556667
Q ss_pred cCCcEEEcCCccc------cCChHHHHHHHHcCCEEEE----e-cc------------CCCHHHHHHHHHhcCccEEE
Q 040734 270 GGLQGIVSEVKGV------FRNPGAVTKIKESKLSLLT----Y-GR------------LNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 270 ~~~~~i~~~~~~~------~~~~~~v~~~~~~Gl~v~~----w-~T------------vn~~~~~~~~~~~~GVdgI~ 324 (361)
.|+..+-.+.+.+ ..+.+.++.+|..|+.|=+ = ++ .-+++++.++....|||.+-
T Consensus 96 ~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LA 173 (284)
T PRK12737 96 AGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLA 173 (284)
T ss_pred cCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEe
Confidence 8998888776653 2367999999999988721 0 00 12677888887667877443
No 229
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=45.05 E-value=82 Score=29.36 Aligned_cols=89 Identities=9% Similarity=0.022 Sum_probs=50.7
Q ss_pred HHHHhcCCcEEEcCCccccC--------ChHHHHHHHHcCCEEEEecc-----C-C----CHHHH---HHHHHhcCccEE
Q 040734 265 KVCLEGGLQGIVSEVKGVFR--------NPGAVTKIKESKLSLLTYGR-----L-N----NVAEA---VYMQHLMGIDGV 323 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~--------~~~~v~~~~~~Gl~v~~w~T-----v-n----~~~~~---~~~~~~~GVdgI 323 (361)
+-+.++|++++....+.-.- -...+..+|+.|+.+..|.. + + ++... .++..++|.|-|
T Consensus 104 e~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIi 183 (265)
T COG1830 104 EDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADII 183 (265)
T ss_pred HHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeE
Confidence 34456777766544332111 13677889999999999842 2 1 11112 223346999999
Q ss_pred EeCChHHHHHHHHHhcCCcccccccCcccc
Q 040734 324 IVDLVQEITEAVYDMIKPAKVVEKEDNKSL 353 (361)
Q Consensus 324 ~TD~p~~~~~~l~~~~~~~~~~~~~~~~~~ 353 (361)
=|++|..-..|.+-...-..++.-.++.+.
T Consensus 184 K~~ytg~~e~F~~vv~~~~vpVviaGG~k~ 213 (265)
T COG1830 184 KTKYTGDPESFRRVVAACGVPVVIAGGPKT 213 (265)
T ss_pred eecCCCChHHHHHHHHhCCCCEEEeCCCCC
Confidence 999996554444433322255555555444
No 230
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=44.81 E-value=1.3e+02 Score=27.79 Aligned_cols=72 Identities=13% Similarity=0.073 Sum_probs=44.8
Q ss_pred HHHHHhcCCcEEEcCCccccCC----hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe---CChHHHHHHHH
Q 040734 264 VKVCLEGGLQGIVSEVKGVFRN----PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV---DLVQEITEAVY 336 (361)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~~----~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T---D~p~~~~~~l~ 336 (361)
.+.+-..|++++.++...-..+ ..++..++..|+..++=-..+++..+.+.+ +.|++||+. +.++.++++++
T Consensus 26 ~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~L-D~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 26 TEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLL-DIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred HHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHh-cCCCCEEEecCcCCHHHHHHHHH
Confidence 3444567777777665432222 366667777887766642345677777776 689999885 44555555554
No 231
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=44.64 E-value=1.5e+02 Score=26.54 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCcEEEcCCccc-----cCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 261 EEAVKVCLEGGLQGIVSEVKGV-----FRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
.+..+.+...|++.+.+..... -.+-++++.+++. +++|++-|-+++.+++.+++...|+|||+.-
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 4445556677887766554111 1134677777654 7889888789999999994457999999864
No 232
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=44.24 E-value=3.1e+02 Score=26.69 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCC-------H----HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHh
Q 040734 201 RVIQAILKIVFEFAENRPIIFSTFQ-------P----DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLE 269 (361)
Q Consensus 201 ~~v~~vl~~l~~~~~~~rv~~~Sf~-------~----~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~ 269 (361)
..+..+++.-++.+ .+++++... . .+++.+.+..+.+|+++=.+-.. +++ .+..+.+
T Consensus 29 e~~~avi~AAee~~--sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~---------~~e-~i~~ai~ 96 (347)
T PRK09196 29 EQVQAIMEAADETD--SPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGN---------SPA-TCQRAIQ 96 (347)
T ss_pred HHHHHHHHHHHHhC--CCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCC---------CHH-HHHHHHH
Confidence 34566666655553 356665422 1 23333334445578776554432 233 3455667
Q ss_pred cCCcEEEcCCccc-------------cCChHHHHHHHHcCCEE
Q 040734 270 GGLQGIVSEVKGV-------------FRNPGAVTKIKESKLSL 299 (361)
Q Consensus 270 ~~~~~i~~~~~~~-------------~~~~~~v~~~~~~Gl~v 299 (361)
.|+..+.++.+.+ ..+.+.++.+|..|+.|
T Consensus 97 ~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~V 139 (347)
T PRK09196 97 LGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSV 139 (347)
T ss_pred cCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 8888888776643 24679999999999877
No 233
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=44.10 E-value=2.2e+02 Score=26.19 Aligned_cols=74 Identities=9% Similarity=0.145 Sum_probs=43.4
Q ss_pred HHHHHhcCCcEEEcCCccccCC----hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe---CChHHHHHHHH
Q 040734 264 VKVCLEGGLQGIVSEVKGVFRN----PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV---DLVQEITEAVY 336 (361)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~~----~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T---D~p~~~~~~l~ 336 (361)
.+.+...|++.+.++...-..+ ...++.++..|..+++=--.+++..+.+.+ +.|++||+- +.++.++++++
T Consensus 26 ~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~L-d~Ga~gIivP~v~s~e~a~~~v~ 104 (249)
T TIGR02311 26 AEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLL-DIGAQTLLVPMIETAEQAEAAVA 104 (249)
T ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHh-CCCCCEEEecCcCCHHHHHHHHH
Confidence 3445566777776665432112 135555556676655541124566777776 799999984 66666666665
Q ss_pred Hh
Q 040734 337 DM 338 (361)
Q Consensus 337 ~~ 338 (361)
..
T Consensus 105 ~~ 106 (249)
T TIGR02311 105 AT 106 (249)
T ss_pred Hc
Confidence 43
No 234
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=44.10 E-value=3e+02 Score=26.51 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=34.4
Q ss_pred HHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHHHH
Q 040734 287 GAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEA 334 (361)
Q Consensus 287 ~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~ 334 (361)
++++.+++. ++.|++-|-+.+++++++++..-++|+|+--++-...-.
T Consensus 275 ~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~ 323 (343)
T cd04734 275 PLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPH 323 (343)
T ss_pred HHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCcc
Confidence 455556554 677877667899999999985345999998776665443
No 235
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=43.97 E-value=86 Score=31.15 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=58.4
Q ss_pred cCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc----------------ccCCh
Q 040734 223 TFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG----------------VFRNP 286 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~----------------~~~~~ 286 (361)
.|..++++++++.+|++.+.--. +. +-+.+.++ ...|++++.+-... ...--
T Consensus 277 ~~qiemik~iK~~yP~l~ViaGN---------VV--T~~qa~nL-I~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy 344 (503)
T KOG2550|consen 277 IYQLEMIKYIKETYPDLQIIAGN---------VV--TKEQAANL-IAAGADGLRVGMGSGSICITQKVMACGRPQGTAVY 344 (503)
T ss_pred hhHHHHHHHHHhhCCCceeeccc---------ee--eHHHHHHH-HHccCceeEeccccCceeeeceeeeccCCcccchh
Confidence 36688999999999998764211 10 11222233 35667665433221 00112
Q ss_pred HHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 287 GAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 287 ~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
+..+.+++.|++|++-|.+.+...+.+.+ .+|.+.||.
T Consensus 345 ~va~~A~q~gvpviADGGiq~~Ghi~KAl-~lGAstVMm 382 (503)
T KOG2550|consen 345 KVAEFANQFGVPCIADGGIQNVGHVVKAL-GLGASTVMM 382 (503)
T ss_pred hHHHHHHhcCCceeecCCcCccchhHhhh-hcCchhhee
Confidence 67788999999999998898888888886 588775553
No 236
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=43.90 E-value=2.5e+02 Score=25.46 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCcEEEcCCc------cccCChHHHHHHHHcC-CEEEEeccCCCHHHHHHHHHhcCccEEE-----eCC
Q 040734 260 LEEAVKVCLEGGLQGIVSEVK------GVFRNPGAVTKIKESK-LSLLTYGRLNNVAEAVYMQHLMGIDGVI-----VDL 327 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~------~~~~~~~~v~~~~~~G-l~v~~w~Tvn~~~~~~~~~~~~GVdgI~-----TD~ 327 (361)
+.+-++.....|++.+|++.- .+..-+..++.+++.. +.+-+---|.+++.+...+...|+|.|+ +..
T Consensus 18 l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~ 97 (220)
T COG0036 18 LGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEH 97 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcC
Confidence 555566677788888887641 1123578899998864 4444443466776654443468999887 567
Q ss_pred hHHHHHHHHHhcC
Q 040734 328 VQEITEAVYDMIK 340 (361)
Q Consensus 328 p~~~~~~l~~~~~ 340 (361)
+.+..+++++.+.
T Consensus 98 ~~r~i~~Ik~~G~ 110 (220)
T COG0036 98 IHRTIQLIKELGV 110 (220)
T ss_pred HHHHHHHHHHcCC
Confidence 7888888877643
No 237
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.86 E-value=2.2e+02 Score=24.84 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=63.4
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccC
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRL 305 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tv 305 (361)
.+.++.+++..|.+..+.-+- ...+-.+.+...|+++++.... .++.++..+.+++..+. | +
T Consensus 51 ~e~~~~~~~~~~~~~~g~gtv------------l~~d~~~~A~~~gAdgv~~p~~----~~~~~~~~~~~~~~~i~-G-~ 112 (187)
T PRK07455 51 AELISQLREKLPECIIGTGTI------------LTLEDLEEAIAAGAQFCFTPHV----DPELIEAAVAQDIPIIP-G-A 112 (187)
T ss_pred HHHHHHHHHhCCCcEEeEEEE------------EcHHHHHHHHHcCCCEEECCCC----CHHHHHHHHHcCCCEEc-C-c
Confidence 456677777777554432110 0124456788899999987653 67888899999986543 3 7
Q ss_pred CCHHHHHHHHHhcCccEEEeCChHHH---HHHHHHhcC
Q 040734 306 NNVAEAVYMQHLMGIDGVIVDLVQEI---TEAVYDMIK 340 (361)
Q Consensus 306 n~~~~~~~~~~~~GVdgI~TD~p~~~---~~~l~~~~~ 340 (361)
+++.++.+.. ..|+|.|-- +|... .++++....
T Consensus 113 ~t~~e~~~A~-~~Gadyv~~-Fpt~~~~G~~~l~~~~~ 148 (187)
T PRK07455 113 LTPTEIVTAW-QAGASCVKV-FPVQAVGGADYIKSLQG 148 (187)
T ss_pred CCHHHHHHHH-HCCCCEEEE-CcCCcccCHHHHHHHHh
Confidence 8999998886 699998866 77642 455555443
No 238
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=43.68 E-value=98 Score=26.69 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=33.9
Q ss_pred HHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 265 KVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
+.+.+.+++++|+....+ ....++.....+..+ .. ++++.+++.++. ..|+|.|+-
T Consensus 66 ~la~~~~~dGvHl~~~~~--~~~~~r~~~~~~~~i-g~-S~h~~~e~~~a~-~~g~dYv~~ 121 (180)
T PF02581_consen 66 DLALELGADGVHLGQSDL--PPAEARKLLGPDKII-GA-SCHSLEEAREAE-ELGADYVFL 121 (180)
T ss_dssp HHHHHCT-SEEEEBTTSS--SHHHHHHHHTTTSEE-EE-EESSHHHHHHHH-HCTTSEEEE
T ss_pred HHHHhcCCCEEEeccccc--chHHhhhhcccceEE-Ee-ecCcHHHHHHhh-hcCCCEEEE
Confidence 345567788888776543 344444444445444 34 578888877774 588888763
No 239
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=43.53 E-value=2.1e+02 Score=25.12 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHCCCCCE--EEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEE
Q 040734 224 FQPDAAVLIRKLQSTYPV--FFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLT 301 (361)
Q Consensus 224 f~~~~l~~l~~~~p~~~~--~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~ 301 (361)
+..+.++.+++..+ .+. .+.++. ..+.+..+.+.|++++.++....-.....++.+++.|+.+..
T Consensus 48 ~~~~~~~~i~~~~~-~~~~v~l~v~d------------~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~ 114 (220)
T PRK05581 48 IGPPVVEAIRKVTK-LPLDVHLMVEN------------PDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGL 114 (220)
T ss_pred cCHHHHHHHHhcCC-CcEEEEeeeCC------------HHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEE
Confidence 45677777876655 332 233322 122334555788888665544221134677888999988766
Q ss_pred e
Q 040734 302 Y 302 (361)
Q Consensus 302 w 302 (361)
-
T Consensus 115 ~ 115 (220)
T PRK05581 115 V 115 (220)
T ss_pred E
Confidence 4
No 240
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=43.40 E-value=2.7e+02 Score=27.03 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=27.8
Q ss_pred hHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEE
Q 040734 286 PGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 286 ~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
-+.++++++. +++|++= .+.+.+++..+. +.|||+|+
T Consensus 202 ~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~-~~G~d~I~ 239 (344)
T cd02922 202 WDDIKWLRKHTKLPIVLK-GVQTVEDAVLAA-EYGVDGIV 239 (344)
T ss_pred HHHHHHHHHhcCCcEEEE-cCCCHHHHHHHH-HcCCCEEE
Confidence 3566777664 4677776 678888888886 79999988
No 241
>PRK14057 epimerase; Provisional
Probab=43.23 E-value=1.8e+02 Score=27.01 Aligned_cols=79 Identities=8% Similarity=-0.118 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCcEEEcCCc------cccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEE-----eCCh
Q 040734 260 LEEAVKVCLEGGLQGIVSEVK------GVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVI-----VDLV 328 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~------~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~-----TD~p 328 (361)
+.+-++.....|++.+|++.- .+...+.+++.+++ .+.+-+---|.+++.+.+.+...|+|.|+ ++++
T Consensus 34 L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~-~~p~DvHLMV~~P~~~i~~~~~aGad~It~H~Ea~~~~ 112 (254)
T PRK14057 34 LHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ-TFIKDVHLMVADQWTAAQACVKAGAHCITLQAEGDIHL 112 (254)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhcc-CCCeeEEeeeCCHHHHHHHHHHhCCCEEEEeeccccCH
Confidence 344444555566666665531 11235677777755 33332222245566654333357888766 4556
Q ss_pred HHHHHHHHHhc
Q 040734 329 QEITEAVYDMI 339 (361)
Q Consensus 329 ~~~~~~l~~~~ 339 (361)
....+.+++.+
T Consensus 113 ~~~l~~Ir~~G 123 (254)
T PRK14057 113 HHTLSWLGQQT 123 (254)
T ss_pred HHHHHHHHHcC
Confidence 66666666654
No 242
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=43.04 E-value=1.7e+02 Score=25.54 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCcEEEcC-----C-ccccCChHHHHHHHHc-CCEEEE-eccCCCHHHHHHHHHhcCccEEEe
Q 040734 260 LEEAVKVCLEGGLQGIVSE-----V-KGVFRNPGAVTKIKES-KLSLLT-YGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~-----~-~~~~~~~~~v~~~~~~-Gl~v~~-w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
+.+.++.+...|++.+++. . .......+.++.+++. ...+.+ . .+++..+..+.+...|+|||+.
T Consensus 13 ~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~l-m~~~~~~~~~~~~~~gadgv~v 85 (210)
T TIGR01163 13 LGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHL-MVENPDRYIEDFAEAGADIITV 85 (210)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe-eeCCHHHHHHHHHHcCCCEEEE
Confidence 3444555556666666653 1 1122355666776653 233322 2 3344444333333577777553
No 243
>cd08588 PI-PLCc_At5g67130_like Catalytic domain of Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. This subfamily corresponds to the catalytic domain present in Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. Members in this family show high sequence similarity to bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participates in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG).
Probab=42.80 E-value=34 Score=32.03 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=30.0
Q ss_pred ccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCC
Q 040734 71 KENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDD 107 (361)
Q Consensus 71 pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~ 107 (361)
..|--.++...++.|+.++++||+.. ++.+.++|..
T Consensus 34 ~~nQ~~si~~QL~~GiR~l~ld~~~~-~~~~~lcH~~ 69 (270)
T cd08588 34 APNQEDDITKQLDDGVRGLMLDIHDA-NGGLRLCHSV 69 (270)
T ss_pred ccccCCCHHHHHHhCcceEeeeEEec-CCCEEEECCC
Confidence 34555788889999999999999986 7788999964
No 244
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.77 E-value=92 Score=29.21 Aligned_cols=64 Identities=22% Similarity=0.193 Sum_probs=44.9
Q ss_pred hHHHHHHHHc---CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC--hHHHHHHHHHhc--CCcccccccCccc
Q 040734 286 PGAVTKIKES---KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL--VQEITEAVYDMI--KPAKVVEKEDNKS 352 (361)
Q Consensus 286 ~~~v~~~~~~---Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~--p~~~~~~l~~~~--~~~~~~~~~~~~~ 352 (361)
.+.++.+++. ..++.+- +++.++....+ .+|+|.|+-|. |+.+.+.++... .|....+.+|+..
T Consensus 169 ~~~v~~~k~~~p~~~~I~VE--v~tleea~~A~-~~GaDiI~LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt 239 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIE--CESLEEAKNAM-NAGADIVMCDNMSVEEIKEVVAYRNANYPHVLLEASGNIT 239 (273)
T ss_pred HHHHHHHHHhCCCCceEEEE--eCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEECCCC
Confidence 4677888775 3667776 78899998887 69999999887 556667766432 2444566666553
No 245
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=42.69 E-value=51 Score=26.27 Aligned_cols=90 Identities=10% Similarity=0.167 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc
Q 040734 202 VIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG 281 (361)
Q Consensus 202 ~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~ 281 (361)
++-++++.+++.+.. -+.+.| +++....-.... ...+....... .-.+...+..++.+++.+++.+++.+..
T Consensus 13 ia~r~~ra~r~~Gi~-tv~v~s-~~d~~s~~~~~a---d~~~~~~~~~~---~~~yl~~e~I~~ia~~~g~~~i~pGyg~ 84 (110)
T PF00289_consen 13 IAVRIIRALRELGIE-TVAVNS-NPDTVSTHVDMA---DEAYFEPPGPS---PESYLNIEAIIDIARKEGADAIHPGYGF 84 (110)
T ss_dssp HHHHHHHHHHHTTSE-EEEEEE-GGGTTGHHHHHS---SEEEEEESSSG---GGTTTSHHHHHHHHHHTTESEEESTSST
T ss_pred HHHHHHHHHHHhCCc-ceeccC-chhccccccccc---ccceecCcchh---hhhhccHHHHhhHhhhhcCcccccccch
Confidence 456677777777653 344444 333322211221 12222221110 1113457888899999999999999988
Q ss_pred ccCChHHHHHHHHcCCEE
Q 040734 282 VFRNPGAVTKIKESKLSL 299 (361)
Q Consensus 282 ~~~~~~~v~~~~~~Gl~v 299 (361)
+..++++.+.+.++|+.+
T Consensus 85 lse~~~fa~~~~~~gi~f 102 (110)
T PF00289_consen 85 LSENAEFAEACEDAGIIF 102 (110)
T ss_dssp TTTHHHHHHHHHHTT-EE
T ss_pred hHHHHHHHHHHHHCCCEE
Confidence 877899999999999865
No 246
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=42.66 E-value=1e+02 Score=27.04 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=38.8
Q ss_pred HHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 265 KVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
+.+...|++++++..... ....++.++..|..+.+- +++..+..+.. ..|+|.|..
T Consensus 75 ~~a~~~gad~vh~~~~~~--~~~~~~~~~~~~~~~g~~--~~t~~e~~~a~-~~gaD~v~~ 130 (212)
T PRK00043 75 DLALAVGADGVHLGQDDL--PVADARALLGPDAIIGLS--THTLEEAAAAL-AAGADYVGV 130 (212)
T ss_pred HHHHHcCCCEEecCcccC--CHHHHHHHcCCCCEEEEe--CCCHHHHHHHh-HcCCCEEEE
Confidence 345677888888765432 345566677778877766 46777777765 589999974
No 247
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=42.63 E-value=3e+02 Score=25.99 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCC--------HH----HHHHHHHHC-CCCCEEEEccCCCccccccccccHHHHHHHH
Q 040734 201 RVIQAILKIVFEFAENRPIIFSTFQ--------PD----AAVLIRKLQ-STYPVFFLTNGGTEIFYDVRRNSLEEAVKVC 267 (361)
Q Consensus 201 ~~v~~vl~~l~~~~~~~rv~~~Sf~--------~~----~l~~l~~~~-p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~ 267 (361)
..+..+++.-++.+ .+++++... .+ .++.+.+.. ..+|+++=.+-+. +++ .+..+
T Consensus 29 e~~~avi~AAe~~~--sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~---------~~e-~i~~a 96 (285)
T PRK07709 29 EWTQAILAAAEEEK--SPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGS---------SFE-KCKEA 96 (285)
T ss_pred HHHHHHHHHHHHHC--CCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCC---------CHH-HHHHH
Confidence 34556666555543 356665422 11 233333332 2367776554432 233 33455
Q ss_pred HhcCCcEEEcCCccc------cCChHHHHHHHHcCCEEEE-----ecc----------CCCHHHHHHHHHhcCccEEE
Q 040734 268 LEGGLQGIVSEVKGV------FRNPGAVTKIKESKLSLLT-----YGR----------LNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 268 ~~~~~~~i~~~~~~~------~~~~~~v~~~~~~Gl~v~~-----w~T----------vn~~~~~~~~~~~~GVdgI~ 324 (361)
.+.|+..+-.+.+.+ ..|.+.++.+|..|+.|=+ =+. .-++++..++....|||.+-
T Consensus 97 i~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LA 174 (285)
T PRK07709 97 IDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLA 174 (285)
T ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEE
Confidence 678888887776553 2367999999999988721 000 13788888887668888665
No 248
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=42.58 E-value=1.5e+02 Score=27.58 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=40.9
Q ss_pred cCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeC-------ChHHHHHHHH
Q 040734 283 FRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD-------LVQEITEAVY 336 (361)
Q Consensus 283 ~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD-------~p~~~~~~l~ 336 (361)
+.++..++.+.++ .++|.+-.-+.++++..+.+ ++|+|||..+ +|..+.+.++
T Consensus 175 l~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~Am-ElGaDgVL~nSaIakA~dP~~mA~a~~ 235 (267)
T CHL00162 175 LQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAM-ELGASGVLLNTAVAQAKNPEQMAKAMK 235 (267)
T ss_pred CCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHH-HcCCCEEeecceeecCCCHHHHHHHHH
Confidence 3488889988874 58888877799999999987 6999998864 5666655543
No 249
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=42.58 E-value=2e+02 Score=25.42 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCcEEEcCCcc--ccCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEE
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKG--VFRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
+.+..+.....|+.++++.... +--..+.++.+++. +++|.+=+.+.++.+++.+. ..|+|+|+
T Consensus 33 ~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~-~~Gad~v~ 99 (217)
T cd00331 33 PVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEAR-AAGADAVL 99 (217)
T ss_pred HHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHH-HcCCCEEE
Confidence 3444444556777777654211 11244566666554 56665432344555666665 58888885
No 250
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=42.55 E-value=2.4e+02 Score=26.11 Aligned_cols=41 Identities=15% Similarity=0.298 Sum_probs=31.6
Q ss_pred HHHHHHHHc---CCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 287 GAVTKIKES---KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 287 ~~v~~~~~~---Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
+++..+++. ++.|++=|-+++.+++.+++ ..|+|+|+.-+.
T Consensus 231 ~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l-~~GAd~V~vg~a 274 (289)
T cd02810 231 RWVARLAARLQLDIPIIGVGGIDSGEDVLEML-MAGASAVQVATA 274 (289)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHH-HcCccHheEcHH
Confidence 456666554 68888877899999999997 599998876543
No 251
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=42.53 E-value=1.1e+02 Score=28.16 Aligned_cols=136 Identities=16% Similarity=0.131 Sum_probs=68.6
Q ss_pred ccCHHHHHHhCC------CCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCC
Q 040734 166 LCTLQEAFQQVD------PNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTY 239 (361)
Q Consensus 166 iptL~EvL~~~~------~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~ 239 (361)
--|-+|++.... ..-++-+|+-.++.--++ +.-..+++.-.++ +.|+ .-.-+++-|+-.+++|.+.- .
T Consensus 72 c~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~P--D~~etl~Aae~Lv-~eGF-~VlPY~~~D~v~akrL~d~G--c 145 (247)
T PF05690_consen 72 CRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLP--DPIETLKAAEILV-KEGF-VVLPYCTDDPVLAKRLEDAG--C 145 (247)
T ss_dssp -SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B---HHHHHHHHHHHH-HTT--EEEEEE-S-HHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCC--ChhHHHHHHHHHH-HCCC-EEeecCCCCHHHHHHHHHCC--C
Confidence 456677776543 345788888876431111 1223344433333 3333 12224566777777777652 2
Q ss_pred CEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHH-HcCCEEEEeccCCCHHHHHHHHHhc
Q 040734 240 PVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIK-ESKLSLLTYGRLNNVAEAVYMQHLM 318 (361)
Q Consensus 240 ~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~-~~Gl~v~~w~Tvn~~~~~~~~~~~~ 318 (361)
....-.... .| ...=+.++..++.+. +.++.|++-..+..+.+..+.+ ++
T Consensus 146 aavMPlgsP---------------------IG-------Sg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AM-El 196 (247)
T PF05690_consen 146 AAVMPLGSP---------------------IG-------SGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM-EL 196 (247)
T ss_dssp SEBEEBSSS---------------------TT-------T---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHH-HT
T ss_pred CEEEecccc---------------------cc-------cCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH-Hc
Confidence 221111110 00 000134777777775 6689999987799999999887 69
Q ss_pred CccEEEeCC-------hHHHHHHHH
Q 040734 319 GIDGVIVDL-------VQEITEAVY 336 (361)
Q Consensus 319 GVdgI~TD~-------p~~~~~~l~ 336 (361)
|+|+|..|. |..+.++++
T Consensus 197 G~daVLvNTAiA~A~dPv~MA~Af~ 221 (247)
T PF05690_consen 197 GADAVLVNTAIAKAKDPVAMARAFK 221 (247)
T ss_dssp T-SEEEESHHHHTSSSHHHHHHHHH
T ss_pred CCceeehhhHHhccCCHHHHHHHHH
Confidence 999999874 565655543
No 252
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=42.29 E-value=91 Score=29.44 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=45.6
Q ss_pred HHHHHHHHc--CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC--hHHHHHHHHHhc--CCcccccccCcccc
Q 040734 287 GAVTKIKES--KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL--VQEITEAVYDMI--KPAKVVEKEDNKSL 353 (361)
Q Consensus 287 ~~v~~~~~~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~--p~~~~~~l~~~~--~~~~~~~~~~~~~~ 353 (361)
..++.+++. ..+|-+= +++.++..+++ ..|+|.|+-|. |+.+.++.+... .+....+.+++..+
T Consensus 178 ~av~~~r~~~~~~kIeVE--v~tleqa~ea~-~agaDiI~LDn~~~e~l~~av~~~~~~~~~~~leaSGGI~~ 247 (284)
T PRK06096 178 GAINQLRRHAPEKKIVVE--ADTPKEAIAAL-RAQPDVLQLDKFSPQQATEIAQIAPSLAPHCTLSLAGGINL 247 (284)
T ss_pred HHHHHHHHhCCCCCEEEE--CCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEECCCCH
Confidence 567777776 4555555 67889998887 69999999987 777787776543 35555666666543
No 253
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=42.26 E-value=3.1e+02 Score=26.03 Aligned_cols=40 Identities=30% Similarity=0.466 Sum_probs=32.6
Q ss_pred ChHHHHHHHHc-CCEEE--EeccCCCHHHHHHHHHhcCccEEEe
Q 040734 285 NPGAVTKIKES-KLSLL--TYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 285 ~~~~v~~~~~~-Gl~v~--~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
.-++++.+++. +++|+ +=|-+.+++++..++ .+|+|||+.
T Consensus 191 ~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vm-e~GAdgVaV 233 (293)
T PRK04180 191 PYELVKEVAELGRLPVVNFAAGGIATPADAALMM-QLGADGVFV 233 (293)
T ss_pred CHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHH-HhCCCEEEE
Confidence 55888888876 48886 777788999999887 699999875
No 254
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=42.17 E-value=2.7e+02 Score=25.31 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=58.4
Q ss_pred CCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHH-HHHHHc
Q 040734 217 RPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAV-TKIKES 295 (361)
Q Consensus 217 ~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v-~~~~~~ 295 (361)
+...+++-|.+......+. =++|.......+. .....++..+.....+++++..-.-........+ +-+.+.
T Consensus 39 dS~m~H~~n~~~~~~~Ae~-~gi~l~~~~~~g~------~e~eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~l 111 (223)
T COG2102 39 DSYMFHTPNLELAELQAEA-MGIPLVTFDTSGE------EEREVEELKEALRRLKVDGIVAGAIASEYQKERVERLCEEL 111 (223)
T ss_pred CeeeeeccchHHHHHHHHh-cCCceEEEecCcc------chhhHHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHh
Confidence 3567777777776666554 3566555443331 0112445555666677777654321110122333 445888
Q ss_pred CCEEEE--eccCCCHHHHHHHHHhcCccEEEe
Q 040734 296 KLSLLT--YGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 296 Gl~v~~--w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
|+++++ | -.|..+-+..++ ..|.+.+|+
T Consensus 112 Gl~~~~PLW-g~d~~ell~e~~-~~Gf~~~Iv 141 (223)
T COG2102 112 GLKVYAPLW-GRDPEELLEEMV-EAGFEAIIV 141 (223)
T ss_pred CCEEeeccc-CCCHHHHHHHHH-HcCCeEEEE
Confidence 999975 8 577777788886 588887775
No 255
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=42.03 E-value=1.1e+02 Score=30.10 Aligned_cols=63 Identities=22% Similarity=0.299 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCcEEEcCCccc-------cCCh-HHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEE
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGV-------FRNP-GAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~-------~~~~-~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
..+..+.+.+.|++.+.++-... ...+ .+.+..++.++.|++ +.+.+.+++.+++ ..|+|+|+
T Consensus 144 ~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~-~aGaDgV~ 214 (369)
T TIGR01304 144 AREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLM-RTGAAGVI 214 (369)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHH-HcCCCEEE
Confidence 44555666677887777652110 0122 456667888999987 4788899998887 59999997
No 256
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=42.00 E-value=3.3e+02 Score=26.74 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=56.5
Q ss_pred HHHHHHHHCCC--CCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCE--EEEe-
Q 040734 228 AAVLIRKLQST--YPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLS--LLTY- 302 (361)
Q Consensus 228 ~l~~l~~~~p~--~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~--v~~w- 302 (361)
.++.+++..|+ ..+.+..... .....++.....|+ ++.+ .+..-++.+++.|.. -+++
T Consensus 38 n~~~l~~~~~~~~~~i~yavKaN----------~~~~vl~~l~~~G~-g~dv------aS~~E~~~~~~~G~~~~~I~~~ 100 (417)
T TIGR01048 38 RFRAYKEAFGGAYSLVCYAVKAN----------SNLALLRLLAELGS-GFDV------VSGGELYRALAAGFPPEKIVFN 100 (417)
T ss_pred HHHHHHHhhCCCCceEEEEehhC----------CCHHHHHHHHHcCC-cEEE------eCHHHHHHHHHcCCCcceEEEe
Confidence 34456666665 4444444332 23445556656664 3322 256667788888864 4455
Q ss_pred ccCCCHHHHHHHHHhcCccEEEeCChHHHHHHHH
Q 040734 303 GRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVY 336 (361)
Q Consensus 303 ~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~ 336 (361)
+...+.+++++++ ..|+.-+..|..+.+..+.+
T Consensus 101 gp~k~~~~l~~a~-~~gi~~i~iDs~~el~~l~~ 133 (417)
T TIGR01048 101 GNGKSRAELERAL-ELGIRCINVDSESELELLNE 133 (417)
T ss_pred CCCCCHHHHHHHH-HcCCCEEEeCCHHHHHHHHH
Confidence 2345778888876 68998788899999887654
No 257
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=41.48 E-value=1.4e+02 Score=25.88 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=36.0
Q ss_pred HHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEE
Q 040734 265 KVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
+.+.+.|++++++....+ ....++.....+..+ .. ++++.++..+.. ..|+|.|+
T Consensus 67 ~la~~~g~~GvHl~~~~~--~~~~~r~~~~~~~~i-g~-s~h~~~e~~~a~-~~g~dyi~ 121 (196)
T TIGR00693 67 DLALALGADGVHLGQDDL--PASEARALLGPDKII-GV-STHNLEELAEAE-AEGADYIG 121 (196)
T ss_pred HHHHHcCCCEEecCcccC--CHHHHHHhcCCCCEE-EE-eCCCHHHHHHHh-HcCCCEEE
Confidence 356678888888765432 444455554455444 34 688888887765 68999987
No 258
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=41.46 E-value=3.5e+02 Score=26.39 Aligned_cols=87 Identities=11% Similarity=0.183 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCC-------H----HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHh
Q 040734 201 RVIQAILKIVFEFAENRPIIFSTFQ-------P----DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLE 269 (361)
Q Consensus 201 ~~v~~vl~~l~~~~~~~rv~~~Sf~-------~----~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~ 269 (361)
..+..+++.-++.+ .+++++... . .+++.+.+..+.+|+++=.+-+. ++ +.+..+.+
T Consensus 29 e~~~avi~AAEe~~--sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~---------~~-e~i~~Ai~ 96 (347)
T PRK13399 29 EQILAIMEAAEATD--SPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGN---------SP-ATCQSAIR 96 (347)
T ss_pred HHHHHHHHHHHHhC--CCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCC---------CH-HHHHHHHh
Confidence 35666666666553 456666432 1 23334444445678876554432 23 23456667
Q ss_pred cCCcEEEcCCccc-------------cCChHHHHHHHHcCCEE
Q 040734 270 GGLQGIVSEVKGV-------------FRNPGAVTKIKESKLSL 299 (361)
Q Consensus 270 ~~~~~i~~~~~~~-------------~~~~~~v~~~~~~Gl~v 299 (361)
.|+..+.++.+.+ ..|.+.++.+|..|+.|
T Consensus 97 ~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsV 139 (347)
T PRK13399 97 SGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSV 139 (347)
T ss_pred cCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeE
Confidence 8998888776643 13579999999999877
No 259
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=41.20 E-value=1.8e+02 Score=25.90 Aligned_cols=67 Identities=24% Similarity=0.328 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCcEEEcCCc-c----ccCChHHHHHHHH-cCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 260 LEEAVKVCLEGGLQGIVSEVK-G----VFRNPGAVTKIKE-SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~-~----~~~~~~~v~~~~~-~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
..+..+.+...|+..+++... . .-.+-++++.+.+ .++++.+-|.+.+.++++++. ..|+|||+...
T Consensus 147 ~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~-~~Gadgv~ig~ 219 (230)
T TIGR00007 147 LEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALK-KLGVYGVIVGK 219 (230)
T ss_pred HHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HCCCCEEEEeH
Confidence 344555566778876653311 1 0123466777755 468888887899999999986 69999998754
No 260
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=41.11 E-value=1.1e+02 Score=26.08 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=37.1
Q ss_pred HHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 266 VCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 266 ~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
.+...|++++++..... ....++.++..+..+.+= +++..++.++. ..|+|.|+-
T Consensus 67 ~a~~~g~~~vh~~~~~~--~~~~~~~~~~~~~~~g~~--~~t~~~~~~~~-~~g~d~i~~ 121 (196)
T cd00564 67 LALAVGADGVHLGQDDL--PVAEARALLGPDLIIGVS--THSLEEALRAE-ELGADYVGF 121 (196)
T ss_pred HHHHcCCCEEecCcccC--CHHHHHHHcCCCCEEEee--CCCHHHHHHHh-hcCCCEEEE
Confidence 45567888887765432 445566666667777654 46777777775 589998864
No 261
>PLN02535 glycolate oxidase
Probab=40.73 E-value=2.8e+02 Score=27.17 Aligned_cols=96 Identities=14% Similarity=0.227 Sum_probs=64.2
Q ss_pred EcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc------ccCChHHHHHHHHc
Q 040734 222 STFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG------VFRNPGAVTKIKES 295 (361)
Q Consensus 222 ~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~------~~~~~~~v~~~~~~ 295 (361)
.+++++.++++++. .+.|+..--- .+.++ ...+...|+++|.+.-.. ...+-..+..+.+.
T Consensus 208 ~~~tW~~i~~lr~~-~~~PvivKgV-----------~~~~d-A~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~a 274 (364)
T PLN02535 208 ASLSWKDIEWLRSI-TNLPILIKGV-----------LTRED-AIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQA 274 (364)
T ss_pred CCCCHHHHHHHHhc-cCCCEEEecC-----------CCHHH-HHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHH
Confidence 36789999999986 4577654210 12223 456678999988654211 01122444444432
Q ss_pred ---CCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 296 ---KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 296 ---Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
.+.|++-|-|.+..++.+.+ .+|.++|..-.|-..
T Consensus 275 v~~~ipVi~dGGIr~g~Dv~KAL-alGA~aV~vGr~~l~ 312 (364)
T PLN02535 275 VGGRVPVLLDGGVRRGTDVFKAL-ALGAQAVLVGRPVIY 312 (364)
T ss_pred HhcCCCEEeeCCCCCHHHHHHHH-HcCCCEEEECHHHHh
Confidence 48899988899999998987 699999999888764
No 262
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=40.29 E-value=3.1e+02 Score=28.13 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHCCCCCEEEEccCCCcc-ccccccccHHHHHHHHHhcCCcEEEcCCc--cccCChHHHHHHHHcCCEE-
Q 040734 224 FQPDAAVLIRKLQSTYPVFFLTNGGTEI-FYDVRRNSLEEAVKVCLEGGLQGIVSEVK--GVFRNPGAVTKIKESKLSL- 299 (361)
Q Consensus 224 f~~~~l~~l~~~~p~~~~~~l~~~~~~~-~~d~~~~~l~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~~~~~~Gl~v- 299 (361)
-.++.|+.+++..|+.++..+..+.... +......-+...++.+.+.|++.+.+--. .+......++.+++.|..+
T Consensus 62 dpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~ 141 (499)
T PRK12330 62 DPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQ 141 (499)
T ss_pred CHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEE
Confidence 3578899999999999988777543211 11222223555677777888887654322 1112357788999999866
Q ss_pred --EEe--ccCCCHHHHHHH---HHhcCccEEE-eCC-----hHHHHHHHHHhc
Q 040734 300 --LTY--GRLNNVAEAVYM---QHLMGIDGVI-VDL-----VQEITEAVYDMI 339 (361)
Q Consensus 300 --~~w--~Tvn~~~~~~~~---~~~~GVdgI~-TD~-----p~~~~~~l~~~~ 339 (361)
.+| +.+.+.+.+.++ +.++|+|.|. .|- |..+.+.+..+.
T Consensus 142 ~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk 194 (499)
T PRK12330 142 GTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIK 194 (499)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHH
Confidence 356 123444433322 2368999886 453 666666665543
No 263
>PRK08005 epimerase; Validated
Probab=40.25 E-value=2.8e+02 Score=24.92 Aligned_cols=93 Identities=11% Similarity=0.034 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHCCCCCE-EEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEE
Q 040734 223 TFQPDAAVLIRKLQSTYPV-FFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLT 301 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~ 301 (361)
+|.+..++.+++.. +.|. ..|.-.. .+..++.....|++.+..++....-..+.++.+|++|+++.+
T Consensus 44 tfG~~~i~~l~~~t-~~~~DvHLMv~~-----------P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~Gl 111 (210)
T PRK08005 44 TFGMKTIQAVAQQT-RHPLSFHLMVSS-----------PQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGL 111 (210)
T ss_pred ccCHHHHHHHHhcC-CCCeEEEeccCC-----------HHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEE
Confidence 68999999998753 3342 2232211 222333344678888888876421234788999999998865
Q ss_pred eccCCC-HHHHHHHHHhcCccE--EEeCChH
Q 040734 302 YGRLNN-VAEAVYMQHLMGIDG--VIVDLVQ 329 (361)
Q Consensus 302 w~Tvn~-~~~~~~~~~~~GVdg--I~TD~p~ 329 (361)
=--.++ .+.+.+++. -+|. |||=.|.
T Consensus 112 AlnP~Tp~~~i~~~l~--~vD~VlvMsV~PG 140 (210)
T PRK08005 112 ALNPATPLLPYRYLAL--QLDALMIMTSEPD 140 (210)
T ss_pred EECCCCCHHHHHHHHH--hcCEEEEEEecCC
Confidence 312333 334455542 3443 3454443
No 264
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=40.19 E-value=3.2e+02 Score=26.78 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=63.2
Q ss_pred EcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc---cc--CCh-HHHHHHHH-
Q 040734 222 STFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG---VF--RNP-GAVTKIKE- 294 (361)
Q Consensus 222 ~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~---~~--~~~-~~v~~~~~- 294 (361)
.+++++.++.+++.. +.|+..= +. .. .+..+.+.+.|+++|.+..+. +. ..+ +.+..+++
T Consensus 213 ~~~~w~~i~~l~~~~-~~PvivK--Gv---------~~-~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~a 279 (367)
T TIGR02708 213 QKLSPRDIEEIAGYS-GLPVYVK--GP---------QC-PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEA 279 (367)
T ss_pred CCCCHHHHHHHHHhc-CCCEEEe--CC---------CC-HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHH
Confidence 468889999998764 4666432 11 11 344566678999987544321 10 011 33444443
Q ss_pred c--CCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 295 S--KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 295 ~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
. .+.|++-|-|.+..++.+++ ++|+|+|+.-+|-..
T Consensus 280 v~~~i~vi~dGGIr~g~Dv~KaL-alGAd~V~igR~~l~ 317 (367)
T TIGR02708 280 VDKRVPIVFDSGVRRGQHVFKAL-ASGADLVALGRPVIY 317 (367)
T ss_pred hCCCCcEEeeCCcCCHHHHHHHH-HcCCCEEEEcHHHHH
Confidence 2 38899998899999999987 699999999998544
No 265
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=40.18 E-value=1.7e+02 Score=26.01 Aligned_cols=79 Identities=16% Similarity=0.169 Sum_probs=50.7
Q ss_pred cHHHHHHHHHhcCCcEEEcCCc------cccCChHHHHHHHHcC---CEEEEeccCCCHHHHHHHHHhcCccEEE-----
Q 040734 259 SLEEAVKVCLEGGLQGIVSEVK------GVFRNPGAVTKIKESK---LSLLTYGRLNNVAEAVYMQHLMGIDGVI----- 324 (361)
Q Consensus 259 ~l~~~~~~~~~~~~~~i~~~~~------~~~~~~~~v~~~~~~G---l~v~~w~Tvn~~~~~~~~~~~~GVdgI~----- 324 (361)
.+.+.++...+.|++.+|++.- .+...+.+++.+++.- +.|+.- +.++..+.+.+...|+|.|+
T Consensus 13 ~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLM--v~~P~~~i~~~~~~g~~~i~~H~E~ 90 (201)
T PF00834_consen 13 NLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLM--VENPERYIEEFAEAGADYITFHAEA 90 (201)
T ss_dssp GHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEE--SSSGGGHHHHHHHHT-SEEEEEGGG
T ss_pred HHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEee--eccHHHHHHHHHhcCCCEEEEcccc
Confidence 4677777888889998887641 1223589999998765 555665 45566554443479999776
Q ss_pred eCChHHHHHHHHHhc
Q 040734 325 VDLVQEITEAVYDMI 339 (361)
Q Consensus 325 TD~p~~~~~~l~~~~ 339 (361)
++.+..+.+++++.+
T Consensus 91 ~~~~~~~i~~ik~~g 105 (201)
T PF00834_consen 91 TEDPKETIKYIKEAG 105 (201)
T ss_dssp TTTHHHHHHHHHHTT
T ss_pred hhCHHHHHHHHHHhC
Confidence 366777777777654
No 266
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.08 E-value=1.1e+02 Score=28.93 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=45.5
Q ss_pred hHHHHHHHHcC---CEEEEeccCCCHHHHHHHHHhcCccEEEeCC--hHHHHHHHHHhcCCcccccccCcccc
Q 040734 286 PGAVTKIKESK---LSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL--VQEITEAVYDMIKPAKVVEKEDNKSL 353 (361)
Q Consensus 286 ~~~v~~~~~~G---l~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~--p~~~~~~l~~~~~~~~~~~~~~~~~~ 353 (361)
.+.++.++++. .+|-+= +++.++..+++ ..|+|.|+-|. |+.+.+++..... ....+.+|+..+
T Consensus 184 ~~av~~~r~~~~~~~kIeVE--v~tleea~~a~-~agaDiImLDnmspe~l~~av~~~~~-~~~leaSGGI~~ 252 (290)
T PRK06559 184 QKAIAQARAYAPFVKMVEVE--VESLAAAEEAA-AAGADIIMLDNMSLEQIEQAITLIAG-RSRIECSGNIDM 252 (290)
T ss_pred HHHHHHHHHhCCCCCeEEEE--CCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHhcC-ceEEEEECCCCH
Confidence 36677777663 566665 68889998887 69999999997 7888888875432 345555655543
No 267
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=39.94 E-value=1.8e+02 Score=26.71 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCcEEEcCCccc-----cCChHHHHHHHH-cCCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGV-----FRNPGAVTKIKE-SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~v~~~~~-~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
..+..+.+...++..+.+..... =.+-++++.+.+ .+++|++-|-+.+.+++.+++...||||++.-.+
T Consensus 154 ~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a 228 (258)
T PRK01033 154 PLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSL 228 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcce
Confidence 45556666777877665432110 013466666655 4789999988999999999874689999987554
No 268
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=39.89 E-value=1.4e+02 Score=29.00 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=41.9
Q ss_pred HHHHHhcCCcEEEcCCccc--------cCChHHHHHHHHcCCEEEEecc-----CCCH-------HHHH---HHHHhcCc
Q 040734 264 VKVCLEGGLQGIVSEVKGV--------FRNPGAVTKIKESKLSLLTYGR-----LNNV-------AEAV---YMQHLMGI 320 (361)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~--------~~~~~~v~~~~~~Gl~v~~w~T-----vn~~-------~~~~---~~~~~~GV 320 (361)
++-|.++|++++......- ..-.+.++++|+.|+.+.+|.. +.++ +.+. ++..++|+
T Consensus 152 VedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGA 231 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGA 231 (348)
T ss_pred HHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcC
Confidence 3446677887776544321 0113677899999999999831 1121 2222 23336999
Q ss_pred cEEEeCChHH
Q 040734 321 DGVIVDLVQE 330 (361)
Q Consensus 321 dgI~TD~p~~ 330 (361)
|-|=|++|..
T Consensus 232 DIVKv~yp~~ 241 (348)
T PRK09250 232 DIIKQKLPTN 241 (348)
T ss_pred CEEEecCCCC
Confidence 9999999954
No 269
>PLN02229 alpha-galactosidase
Probab=39.85 E-value=96 Score=31.08 Aligned_cols=41 Identities=20% Similarity=0.129 Sum_probs=31.1
Q ss_pred hHHHHHHHHcCCEEEEeccCC--------------CHHHHHHHHHhcCccEEEeCCh
Q 040734 286 PGAVTKIKESKLSLLTYGRLN--------------NVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn--------------~~~~~~~~~~~~GVdgI~TD~p 328 (361)
+.+.+++|++|+++..| +.. ...+++.+. ++|||.|=.|..
T Consensus 131 k~ladyiH~~GlKfGIy-~d~G~~TC~~~pGS~g~e~~DA~~fA-~WGVDylK~D~C 185 (427)
T PLN02229 131 KLLADYVHSKGLKLGIY-SDAGVFTCQVRPGSLFHEVDDADIFA-SWGVDYLKYDNC 185 (427)
T ss_pred HHHHHHHHHCCCceEEe-ccCCCcccCCCCCCccHHHHHHHHHH-HcCCCEEEecCC
Confidence 48899999999999999 421 233455554 799999998875
No 270
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=39.75 E-value=2.9e+02 Score=25.11 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHCCCCCE-EEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc-CChHHHHHHHHcCCEEE
Q 040734 223 TFQPDAAVLIRKLQSTYPV-FFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF-RNPGAVTKIKESKLSLL 300 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~~~~Gl~v~ 300 (361)
+|.+..++.+|+. +++|. ..|.-.. ....++...+.|++.+..++.... -....++.+|++|+++.
T Consensus 45 tfg~~~i~~ir~~-t~~~~DvHLMv~~-----------P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaG 112 (229)
T PRK09722 45 TLSPFFVSQVKKL-ASKPLDVHLMVTD-----------PQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVG 112 (229)
T ss_pred ccCHHHHHHHHhc-CCCCeEEEEEecC-----------HHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEE
Confidence 6899999999975 44443 2222111 122233344668888888877421 13478899999999885
Q ss_pred E-eccCCCHHH-HHHHH
Q 040734 301 T-YGRLNNVAE-AVYMQ 315 (361)
Q Consensus 301 ~-w~Tvn~~~~-~~~~~ 315 (361)
+ . -.+++-+ +.+++
T Consensus 113 lal-nP~T~~~~l~~~l 128 (229)
T PRK09722 113 LVL-NPETPVESIKYYI 128 (229)
T ss_pred EEe-CCCCCHHHHHHHH
Confidence 4 4 3444433 44554
No 271
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=39.26 E-value=1.6e+02 Score=22.04 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCcEEEcCCccccC-ChHHHHHHHHcC--CEEEEeccCCCHHHHHHHHHhcCccEEEeC--ChHHHHHH
Q 040734 261 EEAVKVCLEGGLQGIVSEVKGVFR-NPGAVTKIKESK--LSLLTYGRLNNVAEAVYMQHLMGIDGVIVD--LVQEITEA 334 (361)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~~~-~~~~v~~~~~~G--l~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD--~p~~~~~~ 334 (361)
.++........++.+.+++..... -.++++.+++.+ .++.+.+.-++.....+++ ..|++++++- .+..+.+.
T Consensus 33 ~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~ 110 (112)
T PF00072_consen 33 EEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEAL-RAGADDYLSKPFSPEELRAA 110 (112)
T ss_dssp HHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHH-HTTESEEEESSSSHHHHHHH
T ss_pred HHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHh
Confidence 344444444444544444432211 236667776654 7788773344555666665 6999998863 24444433
No 272
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=39.21 E-value=1.6e+02 Score=26.32 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCcEEEcCCcc-----ccCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcC-ccEEEeCC
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKG-----VFRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMG-IDGVIVDL 327 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~G-VdgI~TD~ 327 (361)
+.+..+.....++..+.+.... .-.+-++++.+.+. ++++++-|-+.+.+++.+++ ..| ++|++.-.
T Consensus 148 ~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~-~~g~~~gv~vg~ 221 (233)
T PRK00748 148 AEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALK-GLGAVEGVIVGR 221 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCccEEEEEH
Confidence 4555666667777755443211 01234777777664 68999988899999999987 577 99999754
No 273
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=38.74 E-value=4e+02 Score=27.48 Aligned_cols=127 Identities=11% Similarity=0.091 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCc
Q 040734 201 RVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVK 280 (361)
Q Consensus 201 ~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~ 280 (361)
.+.+.+.+.+.+.+ .++++.--|++.++.+++. +++..+-... -.+..+.+.-.+++.+.....
T Consensus 427 ~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~~--g~~~i~GD~~------------~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 427 RVGSLLGEKLLAAG--IPLVVIETSRTRVDELRER--GIRAVLGNAA------------NEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred hHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHC--CCeEEEcCCC------------CHHHHHhcCccccCEEEEEcC
Confidence 45677777777664 3577777788888888763 4444332111 112222222223443433222
Q ss_pred cccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHHHHHHHhcCCccc
Q 040734 281 GVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDMIKPAKV 344 (361)
Q Consensus 281 ~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~~~~~~~~~ 344 (361)
....+...+..+++..-.+.++..+++++..+.+. ..|+|.|+.-.-....+..+....|...
T Consensus 491 ~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~-~~Gad~vv~p~~~~a~~i~~~l~~~~~~ 553 (558)
T PRK10669 491 NGYEAGEIVASAREKRPDIEIIARAHYDDEVAYIT-ERGANQVVMGEREIARTMLELLETPPAG 553 (558)
T ss_pred ChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHH-HcCCCEEEChHHHHHHHHHHHhcCCCcc
Confidence 11112235555666543333332367777776664 7999999976666666666766666543
No 274
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=38.69 E-value=2.8e+02 Score=26.57 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=58.3
Q ss_pred HHHHHHHHHHC-CCCCEEEEccCCCccccccccccHHHHHHH---HHhcCCcEEEcCCcc-------c---cCChHHHHH
Q 040734 226 PDAAVLIRKLQ-STYPVFFLTNGGTEIFYDVRRNSLEEAVKV---CLEGGLQGIVSEVKG-------V---FRNPGAVTK 291 (361)
Q Consensus 226 ~~~l~~l~~~~-p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~---~~~~~~~~i~~~~~~-------~---~~~~~~v~~ 291 (361)
.++++.+|+.. ++++++.-..... +.+. ....++++++ ....+++.+.+.... . .....+.+.
T Consensus 208 ~eiv~aIR~~vG~d~~v~vri~~~~--~~~~-g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ 284 (336)
T cd02932 208 LEVVDAVRAVWPEDKPLFVRISATD--WVEG-GWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAER 284 (336)
T ss_pred HHHHHHHHHHcCCCceEEEEEcccc--cCCC-CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHH
Confidence 47778888776 4677766433211 0000 0124444444 345677777753210 0 012245556
Q ss_pred HHH-cCCEEEEeccCCCHHHHHHHHHhcC-ccEEEeCChHHH
Q 040734 292 IKE-SKLSLLTYGRLNNVAEAVYMQHLMG-IDGVIVDLVQEI 331 (361)
Q Consensus 292 ~~~-~Gl~v~~w~Tvn~~~~~~~~~~~~G-VdgI~TD~p~~~ 331 (361)
+++ .++.|.+=+.+.+++++++++ ..| +|.|.--++...
T Consensus 285 ir~~~~iPVi~~G~i~t~~~a~~~l-~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 285 IRQEAGIPVIAVGLITDPEQAEAIL-ESGRADLVALGRELLR 325 (336)
T ss_pred HHhhCCCCEEEeCCCCCHHHHHHHH-HcCCCCeehhhHHHHh
Confidence 655 468888776899999999998 466 898876554433
No 275
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=38.46 E-value=2.1e+02 Score=26.76 Aligned_cols=73 Identities=7% Similarity=0.032 Sum_probs=43.5
Q ss_pred HHHHHhcCCcEEEcCCccccCC----hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe---CChHHHHHHHH
Q 040734 264 VKVCLEGGLQGIVSEVKGVFRN----PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV---DLVQEITEAVY 336 (361)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~~----~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T---D~p~~~~~~l~ 336 (361)
.+.+...|++++.++...-..+ ..++..++..|....+=-.-+++..+.+.+ ++|++||+. +.++.++++++
T Consensus 32 ~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r~L-D~GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 32 AEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQVL-DIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred HHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHHHh-CCCCCeeEecCcCCHHHHHHHHH
Confidence 3444456777776665432222 256667777777665541235666677776 688888885 55555555554
Q ss_pred H
Q 040734 337 D 337 (361)
Q Consensus 337 ~ 337 (361)
.
T Consensus 111 a 111 (267)
T PRK10128 111 A 111 (267)
T ss_pred h
Confidence 3
No 276
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=38.44 E-value=1e+02 Score=27.73 Aligned_cols=40 Identities=30% Similarity=0.485 Sum_probs=29.2
Q ss_pred hHHHHHHHHcC-CEEEEe--ccCCCHHHHHHHHHhcCccEEEeC
Q 040734 286 PGAVTKIKESK-LSLLTY--GRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 286 ~~~v~~~~~~G-l~v~~w--~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
-+++...++.| ++|.-+ |.|-++.+..-++ ++|+|||+..
T Consensus 196 ~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmM-QLGCdGVFVG 238 (296)
T KOG1606|consen 196 YDLVKQTKQLGRLPVVNFAAGGVATPADAALMM-QLGCDGVFVG 238 (296)
T ss_pred HHHHHHHHHcCCCceEEecccCcCChhHHHHHH-HcCCCeEEec
Confidence 46777788888 555433 3577899987776 6999999864
No 277
>PF12957 DUF3846: Domain of unknown function (DUF3846); InterPro: IPR024559 A family of uncharacterised proteins found by clustering human gut metagenomic sequences []. In a few cases it is found fused to the C terminus of ArdA (Pfam:PF07275). ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification [].
Probab=38.25 E-value=63 Score=24.85 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=27.7
Q ss_pred ccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCC
Q 040734 69 AIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDV 108 (361)
Q Consensus 69 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~ 108 (361)
...+||+.++++++ +.+||+ |.+ .|+..++++|.-
T Consensus 14 ~~i~~~l~~lq~~V---gG~ie~-v~l-~~~~~l~~neeG 48 (95)
T PF12957_consen 14 IEIDNSLEALQKLV---GGYIEV-VYL-DDGVVLYCNEEG 48 (95)
T ss_pred EecCCCHHHHHHHH---CCeEEE-Eec-CCCEEEEEeCcc
Confidence 35788999999999 567888 777 567778888765
No 278
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=38.20 E-value=2.1e+02 Score=27.57 Aligned_cols=109 Identities=13% Similarity=0.055 Sum_probs=61.6
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHH---HHhcCCcEEEcCCcccc---------CChHHHHHHH
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKV---CLEGGLQGIVSEVKGVF---------RNPGAVTKIK 293 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~---~~~~~~~~i~~~~~~~~---------~~~~~v~~~~ 293 (361)
.++++.+|+.. ++|+++=.......... .++++.+++ ..+.|++.+++...... ....+.+.++
T Consensus 196 ~eii~~ir~~~-~~~v~vRis~~d~~~~G---~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik 271 (337)
T PRK13523 196 REIIDAVKEVW-DGPLFVRISASDYHPGG---LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIR 271 (337)
T ss_pred HHHHHHHHHhc-CCCeEEEecccccCCCC---CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHH
Confidence 36677777765 56666543321100001 134444444 44567888877654210 0125566676
Q ss_pred Hc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC-----hHHHHHHHHHh
Q 040734 294 ES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL-----VQEITEAVYDM 338 (361)
Q Consensus 294 ~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~-----p~~~~~~l~~~ 338 (361)
++ ++.|.+=|-+++++.+++++..-++|.|.--+ |+...++.+.+
T Consensus 272 ~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~~ 322 (337)
T PRK13523 272 EHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKEL 322 (337)
T ss_pred hhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHHc
Confidence 65 57776665789999999987433499887554 44445554443
No 279
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.19 E-value=3.1e+02 Score=24.94 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCcEEEcCC-cc----ccCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 260 LEEAVKVCLEGGLQGIVSEV-KG----VFRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~-~~----~~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
..+..+.+...|+..+.+.. .. --.+-++++.+.+. +++|++-|-+.+.+++.+++...|++|++.-.
T Consensus 155 ~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~ 228 (253)
T PRK02083 155 AVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAAS 228 (253)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhH
Confidence 44555556677887765432 10 01134666766554 79999998899999998886446999999854
No 280
>PRK15447 putative protease; Provisional
Probab=38.15 E-value=3e+02 Score=26.02 Aligned_cols=79 Identities=5% Similarity=-0.059 Sum_probs=48.7
Q ss_pred cccccHHHHHHHHHhcCCcEEEcCCccc-----c---CChHHHHHHHHcCCEEEEecc--C-CCHHHH---HHHHHhcCc
Q 040734 255 VRRNSLEEAVKVCLEGGLQGIVSEVKGV-----F---RNPGAVTKIKESKLSLLTYGR--L-NNVAEA---VYMQHLMGI 320 (361)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~-----~---~~~~~v~~~~~~Gl~v~~w~T--v-n~~~~~---~~~~~~~GV 320 (361)
|+..++..........|++.|-+....+ + .-.+.++.+|++|++|++- + + ..+.++ .+++ ..|+
T Consensus 12 ~p~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva-~p~i~~~~~e~~~l~~~l-~~~~ 89 (301)
T PRK15447 12 WPKETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLS-TLALVEAPSELKELRRLV-ENGE 89 (301)
T ss_pred CCCCCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEE-ecccccCHHHHHHHHHHH-hcCC
Confidence 3334555555555556777765543221 0 1247889999999999874 3 2 223343 3444 5799
Q ss_pred cEEEeCChHHHHHHH
Q 040734 321 DGVIVDLVQEITEAV 335 (361)
Q Consensus 321 dgI~TD~p~~~~~~l 335 (361)
|+|+...+..+.-+.
T Consensus 90 ~~v~v~d~g~l~~~~ 104 (301)
T PRK15447 90 FLVEANDLGAVRLLA 104 (301)
T ss_pred CEEEEeCHHHHHHHH
Confidence 999999998876333
No 281
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=37.92 E-value=2.9e+02 Score=24.82 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=34.0
Q ss_pred HHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC-----hHHHHHHHHHh
Q 040734 291 KIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL-----VQEITEAVYDM 338 (361)
Q Consensus 291 ~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~-----p~~~~~~l~~~ 338 (361)
.++..++++.+-|.+++.++++.++ ..|+|+|+.+. |+.+.++.+.+
T Consensus 71 i~~~~~~~l~v~GGi~~~~~~~~~~-~~Ga~~v~iGs~~~~~~~~~~~i~~~~ 122 (241)
T PRK13585 71 IIEAVGVPVQLGGGIRSAEDAASLL-DLGVDRVILGTAAVENPEIVRELSEEF 122 (241)
T ss_pred HHHHcCCcEEEcCCcCCHHHHHHHH-HcCCCEEEEChHHhhChHHHHHHHHHh
Confidence 3356677787766789998888887 69999988765 44566666654
No 282
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=37.86 E-value=3.8e+02 Score=25.78 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=51.5
Q ss_pred HHHHHHHCC--CCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCE---EEEec
Q 040734 229 AVLIRKLQS--TYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLS---LLTYG 303 (361)
Q Consensus 229 l~~l~~~~p--~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~---v~~w~ 303 (361)
++.+++..| +..+.+..... .....++...+.| .++.+. +..-+..+++.|.. +...+
T Consensus 17 ~~~l~~~~~~~~~~~~yavKaN----------~~~~v~~~l~~~G-~g~~va------S~~E~~~~~~~G~~~~~I~~~~ 79 (373)
T cd06828 17 YRRLKEAFSGPGFKICYAVKAN----------SNLAILKLLAEEG-LGADVV------SGGELYRALKAGFPPERIVFTG 79 (373)
T ss_pred HHHHHHhhCCCCcEEEEEehhC----------CCHHHHHHHHHcC-CcEEEe------CHHHHHHHHHcCCCcccEEEeC
Confidence 344555555 44454444332 2334445555555 343321 44556677777754 44333
Q ss_pred cCCCHHHHHHHHHhcCccEEEeCChHHHHHHHH
Q 040734 304 RLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVY 336 (361)
Q Consensus 304 Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~ 336 (361)
...+.++++.++ ..|+.-++.|.++.+.++.+
T Consensus 80 p~k~~~~l~~a~-~~g~~~~~ids~~el~~l~~ 111 (373)
T cd06828 80 NGKSDEELELAL-ELGILRINVDSLSELERLGE 111 (373)
T ss_pred CCCCHHHHHHHH-HcCCeEEEECCHHHHHHHHH
Confidence 455777887776 58877788888888876654
No 283
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=37.69 E-value=3.9e+02 Score=25.96 Aligned_cols=89 Identities=9% Similarity=-0.093 Sum_probs=57.1
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCC--------ccc--------cCChHHH
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEV--------KGV--------FRNPGAV 289 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~--------~~~--------~~~~~~v 289 (361)
.+.++++|+.+|+.++..-.-. +. +..+.....|++++-+-. ... ..--+..
T Consensus 139 i~~ik~ik~~~P~~~vIaGNV~-----------T~-e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a 206 (346)
T PRK05096 139 VQFVAKAREAWPDKTICAGNVV-----------TG-EMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECA 206 (346)
T ss_pred HHHHHHHHHhCCCCcEEEeccc-----------CH-HHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHH
Confidence 3567788888888765432111 12 233334467777653111 110 0012556
Q ss_pred HHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 290 TKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 290 ~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
+.+|+.|.+|++-|-+....++.+.+ .+|.|.||-..
T Consensus 207 ~~a~~~gvpiIADGGi~~sGDI~KAl-aaGAd~VMlGs 243 (346)
T PRK05096 207 DAAHGLGGQIVSDGGCTVPGDVAKAF-GGGADFVMLGG 243 (346)
T ss_pred HHHHHcCCCEEecCCcccccHHHHHH-HcCCCEEEeCh
Confidence 67789999999999899999999987 69999999765
No 284
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=37.56 E-value=2.9e+02 Score=24.42 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCcEEEcCCccc------cCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 261 EEAVKVCLEGGLQGIVSEVKGV------FRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~------~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
.+.++.+...|++.++++.... ..+-+.+..+++. ++.|++-|-+.+.+++.+++..-|+|+|+.-++-..
T Consensus 141 ~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 141 LELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 3444455566777775443210 1133556666654 688888778999999999874338999998775444
No 285
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.48 E-value=1.1e+02 Score=28.77 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=44.9
Q ss_pred hHHHHHHHHcC---CEEEEeccCCCHHHHHHHHHhcCccEEEeCC--hHHHHHHHHHhcCCcccccccCcccc
Q 040734 286 PGAVTKIKESK---LSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL--VQEITEAVYDMIKPAKVVEKEDNKSL 353 (361)
Q Consensus 286 ~~~v~~~~~~G---l~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~--p~~~~~~l~~~~~~~~~~~~~~~~~~ 353 (361)
.+.++.++++. .++-+= +++.++..+++ ..|+|.|+-|. |+.+.+++.... .....+.+++.-+
T Consensus 181 ~~ai~~~r~~~~~~~kIeVE--v~tleea~ea~-~~gaDiI~LDn~s~e~l~~av~~~~-~~~~leaSGGI~~ 249 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVE--VDTLDQLEEAL-ELGVDAVLLDNMTPDTLREAVAIVA-GRAITEASGRITP 249 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEE--eCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHhC-CCceEEEECCCCH
Confidence 35667777663 556665 67888998887 69999999998 477888877554 3334666665543
No 286
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=37.31 E-value=3.7e+02 Score=27.16 Aligned_cols=112 Identities=21% Similarity=0.120 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHCCCCCEEEEccCCCc-cccccccccHHHHHHHHHhcCCcEEEcCCcc--ccCChHHHHHHHHcCCEEE-
Q 040734 225 QPDAAVLIRKLQSTYPVFFLTNGGTE-IFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG--VFRNPGAVTKIKESKLSLL- 300 (361)
Q Consensus 225 ~~~~l~~l~~~~p~~~~~~l~~~~~~-~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~Gl~v~- 300 (361)
.++.++.+++..|+.++..+...... -+......-..+.++.+.+.|++.+.+-... ...-...++.++++|+.+.
T Consensus 62 p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 62 PWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 56788888888888877644432110 0111111224555667778888766543221 1112467899999998763
Q ss_pred --EeccCCC---HH----HHHHHHHhcCccEEE-eCC-----hHHHHHHHHHh
Q 040734 301 --TYGRLNN---VA----EAVYMQHLMGIDGVI-VDL-----VQEITEAVYDM 338 (361)
Q Consensus 301 --~w~Tvn~---~~----~~~~~~~~~GVdgI~-TD~-----p~~~~~~l~~~ 338 (361)
.+ |... .+ .++++ .++|+|.|. .|- |..+.+.++.+
T Consensus 142 ~i~~-t~~p~~~~~~~~~~a~~l-~~~Gad~I~i~Dt~G~l~P~~v~~lv~al 192 (448)
T PRK12331 142 AISY-TTSPVHTIDYFVKLAKEM-QEMGADSICIKDMAGILTPYVAYELVKRI 192 (448)
T ss_pred EEEe-ecCCCCCHHHHHHHHHHH-HHcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 44 4332 22 22334 368999877 353 66666665554
No 287
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=37.12 E-value=3.3e+02 Score=29.44 Aligned_cols=102 Identities=11% Similarity=0.073 Sum_probs=61.9
Q ss_pred HHHHHHHHHHCC-CCCEEEEccCCCccccccccccHHHHHH---HHHhcCCcEEEcCCccc----------cCChHHHHH
Q 040734 226 PDAAVLIRKLQS-TYPVFFLTNGGTEIFYDVRRNSLEEAVK---VCLEGGLQGIVSEVKGV----------FRNPGAVTK 291 (361)
Q Consensus 226 ~~~l~~l~~~~p-~~~~~~l~~~~~~~~~d~~~~~l~~~~~---~~~~~~~~~i~~~~~~~----------~~~~~~v~~ 291 (361)
.++++.+|+..+ ++|+++-....... .. ..+.++.+. .+.+.|++.++++.... .....+.+.
T Consensus 605 ~eiv~~ir~~~~~~~~v~~ri~~~~~~-~~--g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 681 (765)
T PRK08255 605 LEVFRAVRAVWPAEKPMSVRISAHDWV-EG--GNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADR 681 (765)
T ss_pred HHHHHHHHHhcCCCCeeEEEEcccccc-CC--CCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHH
Confidence 477788888764 67887654432100 00 112444443 44566788887753210 012345556
Q ss_pred HHH-cCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHH
Q 040734 292 IKE-SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQE 330 (361)
Q Consensus 292 ~~~-~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~ 330 (361)
+++ .++.|++=|-+++++++++++..-++|+|+--++-.
T Consensus 682 ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l 721 (765)
T PRK08255 682 IRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHL 721 (765)
T ss_pred HHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHH
Confidence 655 378888887899999999998545699999865433
No 288
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=37.11 E-value=1.2e+02 Score=23.97 Aligned_cols=44 Identities=16% Similarity=0.343 Sum_probs=26.2
Q ss_pred hHHHHHHHHcCC---EEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 286 PGAVTKIKESKL---SLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 286 ~~~v~~~~~~Gl---~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
.++++.+++.+. .+++=|..-+. ..+.+ ...|+|+++++..+.+
T Consensus 68 ~~~i~~l~~~~~~~~~i~vGG~~~~~-~~~~~-~~~G~D~~~~~~~~~~ 114 (119)
T cd02067 68 KEVIEELKEAGLDDIPVLVGGAIVTR-DFKFL-KEIGVDAYFGPATEAV 114 (119)
T ss_pred HHHHHHHHHcCCCCCeEEEECCCCCh-hHHHH-HHcCCeEEECCHHHHH
Confidence 577777877754 34444322221 12233 4699999999877443
No 289
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=37.04 E-value=3.2e+02 Score=24.70 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=26.9
Q ss_pred cCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 295 SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 295 ~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
.+++|++=|-+.+.+++.++. ..|++|++.-.
T Consensus 181 ~~~pviasGGv~~~~Dl~~l~-~~g~~gvivg~ 212 (228)
T PRK04128 181 GDEEFIYAGGVSSAEDVKKLA-EIGFSGVIIGK 212 (228)
T ss_pred CCCCEEEECCCCCHHHHHHHH-HCCCCEEEEEh
Confidence 478999888899999999886 59999988643
No 290
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=36.98 E-value=3.9e+02 Score=27.30 Aligned_cols=135 Identities=10% Similarity=0.156 Sum_probs=75.8
Q ss_pred CceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcC-CCCEEEEc----C-----CHHHHHHHHHHCCCCCEEEEccCC
Q 040734 179 NVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAE-NRPIIFST----F-----QPDAAVLIRKLQSTYPVFFLTNGG 248 (361)
Q Consensus 179 ~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~-~~rv~~~S----f-----~~~~l~~l~~~~p~~~~~~l~~~~ 248 (361)
.+.+|++-|+-.. ..+.+.+-..+..++. .+++.+-- | -...+.++|+. +..+ ++-+-+
T Consensus 355 ~VsINl~a~Dl~s--------~rli~~~~~~l~~~~v~pqQI~lElTER~f~D~~~~~~iI~r~Rea--G~~I-yIDDFG 423 (524)
T COG4943 355 HVSINLSASDLAS--------PRLIDRLNRKLAQYQVRPQQIALELTERTFADPKKMTPIILRLREA--GHEI-YIDDFG 423 (524)
T ss_pred EEEEeeeehhhcC--------chHHHHHHHHHHhcCcChHHheeehhhhhhcCchhhhHHHHHHHhc--CCeE-EEccCc
Confidence 3567777665432 1566666666777663 34444432 1 23455566654 2222 222211
Q ss_pred CccccccccccHHHHHHHHHhcCCcEEEcCCc----------cccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhc
Q 040734 249 TEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVK----------GVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLM 318 (361)
Q Consensus 249 ~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~----------~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~ 318 (361)
+. +.+ +.|...+.++.+-++.. .-++.+..|+.+|..|+++++= .|.+.++..++. ..
T Consensus 424 TG------YSn----L~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaE-GVEteeQ~~~LR-~~ 491 (524)
T COG4943 424 TG------YSN----LHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAE-GVETEEQVDWLR-KR 491 (524)
T ss_pred Cc------chh----HHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEee-cccHHHHHHHHH-Hc
Confidence 10 111 23444555554443332 1245789999999999999999 699999998885 58
Q ss_pred Ccc---EEEeCChHHHHHHHH
Q 040734 319 GID---GVIVDLVQEITEAVY 336 (361)
Q Consensus 319 GVd---gI~TD~p~~~~~~l~ 336 (361)
||+ |-.--.|--+.+++.
T Consensus 492 Gv~~gQGW~fskaLp~q~Fi~ 512 (524)
T COG4943 492 GVHYGQGWLFSKALPAQAFLD 512 (524)
T ss_pred CCccccccccCCCCCHHHHHH
Confidence 875 444444444444444
No 291
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=36.86 E-value=1e+02 Score=26.33 Aligned_cols=85 Identities=24% Similarity=0.122 Sum_probs=50.8
Q ss_pred EEEcCCH------HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHH
Q 040734 220 IFSTFQP------DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIK 293 (361)
Q Consensus 220 ~~~Sf~~------~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~ 293 (361)
+-.|||| +++++..+.+..+-++...+....+. .++++-.+++++.-...-++.... -..-+++.++
T Consensus 7 ypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np~K~pl-----FsleER~~l~~~~~~~l~nV~V~~--f~~Llvd~ak 79 (159)
T COG0669 7 YPGSFDPITNGHLDIIKRASALFDEVIVAVAINPSKKPL-----FSLEERVELIREATKHLPNVEVVG--FSGLLVDYAK 79 (159)
T ss_pred eCCCCCCCccchHHHHHHHHHhccEEEEEEEeCCCcCCC-----cCHHHHHHHHHHHhcCCCceEEEe--cccHHHHHHH
Confidence 3456764 77888888888887777776654332 345565555544321111111111 1447789999
Q ss_pred HcCCEEEEeccCCCHHHHH
Q 040734 294 ESKLSLLTYGRLNNVAEAV 312 (361)
Q Consensus 294 ~~Gl~v~~w~Tvn~~~~~~ 312 (361)
+.|..+.+= .+.+..+.+
T Consensus 80 ~~~a~~ivR-GLR~~sDfe 97 (159)
T COG0669 80 KLGATVLVR-GLRAVSDFE 97 (159)
T ss_pred HcCCCEEEE-eccccchHH
Confidence 999999988 466544443
No 292
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=36.80 E-value=1.4e+02 Score=26.60 Aligned_cols=56 Identities=9% Similarity=0.082 Sum_probs=33.8
Q ss_pred HHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 265 KVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
+.+...+++|+|+....+ ....++.+...+. +... ++++.++..++. ..|+|.|+-
T Consensus 73 ~lA~~~~adGVHlg~~d~--~~~~~r~~~~~~~-~iG~-S~H~~~e~~~A~-~~gaDYi~l 128 (211)
T PRK03512 73 RLAIKHQAYGVHLGQEDL--ETADLNAIRAAGL-RLGV-STHDDMEIDVAL-AARPSYIAL 128 (211)
T ss_pred HHHHHcCCCEEEcChHhC--CHHHHHHhcCCCC-EEEE-eCCCHHHHHHHh-hcCCCEEEE
Confidence 456677888888765432 2233333322233 4455 578888887775 589888763
No 293
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.30 E-value=3.1e+02 Score=24.41 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=52.7
Q ss_pred HHHHHHhcCCcEEEcCCccccCChHHHHHHHHc--CCEEEEeccCCCHHHHHHHHHhcCccEEEe-CChHHHHHHHHHhc
Q 040734 263 AVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKES--KLSLLTYGRLNNVAEAVYMQHLMGIDGVIV-DLVQEITEAVYDMI 339 (361)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T-D~p~~~~~~l~~~~ 339 (361)
..+.+.+.|+..+-+.++.- -..+.|+.+++. ++.|.+= ||-+.++.+..+ +.|.+.|+| ..-..+.++.+++.
T Consensus 21 ia~al~~gGi~~iEit~~tp-~a~~~I~~l~~~~~~~~vGAG-TVl~~e~a~~ai-~aGA~FivSP~~~~~vi~~a~~~~ 97 (201)
T PRK06015 21 LARALAAGGLPAIEITLRTP-AALDAIRAVAAEVEEAIVGAG-TILNAKQFEDAA-KAGSRFIVSPGTTQELLAAANDSD 97 (201)
T ss_pred HHHHHHHCCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEeeE-eCcCHHHHHHHH-HcCCCEEECCCCCHHHHHHHHHcC
Confidence 34445566777665554421 112555665543 4667777 899999998886 699999997 55566667777777
Q ss_pred CCccccc
Q 040734 340 KPAKVVE 346 (361)
Q Consensus 340 ~~~~~~~ 346 (361)
.+.-++.
T Consensus 98 i~~iPG~ 104 (201)
T PRK06015 98 VPLLPGA 104 (201)
T ss_pred CCEeCCC
Confidence 6655554
No 294
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=36.23 E-value=4e+02 Score=25.56 Aligned_cols=90 Identities=14% Similarity=0.256 Sum_probs=52.2
Q ss_pred HHHHHHHCC-CCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCC--EEEEe-cc
Q 040734 229 AVLIRKLQS-TYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKL--SLLTY-GR 304 (361)
Q Consensus 229 l~~l~~~~p-~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl--~v~~w-~T 304 (361)
++.+++..+ +..+.+..... .....++...+.|+ ++.+ .+..-++.+++.|. ..+++ +.
T Consensus 15 ~~~l~~~~~~~~~i~~avKan----------~~~~i~~~l~~~G~-g~~v------as~~E~~~~~~~G~~~~~iv~~gp 77 (368)
T cd06810 15 YAALKEALPSGVKLFYAVKAN----------PNPHVLRTLAEAGT-GFDV------ASKGELALALAAGVPPERIIFTGP 77 (368)
T ss_pred HHHHHHhCCCCCeEEEEEccC----------CCHHHHHHHHHcCC-cEEE------eCHHHHHHHHHcCCCHHHEEEcCC
Confidence 344555555 44444444332 22344455555565 4332 25566777788886 33444 24
Q ss_pred CCCHHHHHHHHHhcCccEEEeCChHHHHHHHH
Q 040734 305 LNNVAEAVYMQHLMGIDGVIVDLVQEITEAVY 336 (361)
Q Consensus 305 vn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~ 336 (361)
..+.++++.++ ..||..++.|.++.+..+.+
T Consensus 78 ~~~~~~l~~~~-~~~~~~~~vds~~el~~l~~ 108 (368)
T cd06810 78 AKSVSEIEAAL-ASGVDHIVVDSLDELERLNE 108 (368)
T ss_pred CCCHHHHHHHH-HCCCCEEEeCCHHHHHHHHH
Confidence 45667777776 58877788899888876643
No 295
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.20 E-value=3.4e+02 Score=25.66 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=51.8
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHH----cC--CEE
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKE----SK--LSL 299 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~----~G--l~v 299 (361)
...++.+|+..|..++..-. .+++++.+.+ ..|++.+.++. .+++.++++-+ .+ ..+
T Consensus 187 ~~ai~~~r~~~~~~kIeVEv------------~tl~ea~eal-~~gaDiI~LDn----m~~e~vk~av~~~~~~~~~v~i 249 (289)
T PRK07896 187 VAALRAVRAAAPDLPCEVEV------------DSLEQLDEVL-AEGAELVLLDN----FPVWQTQEAVQRRDARAPTVLL 249 (289)
T ss_pred HHHHHHHHHhCCCCCEEEEc------------CCHHHHHHHH-HcCCCEEEeCC----CCHHHHHHHHHHHhccCCCEEE
Confidence 35677788877776654333 2466666655 68899988773 25555554432 33 334
Q ss_pred EEeccCCCHHHHHHHHHhcCccEEEeCChH
Q 040734 300 LTYGRLNNVAEAVYMQHLMGIDGVIVDLVQ 329 (361)
Q Consensus 300 ~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~ 329 (361)
-+=|.+| ++.+..+. ..|||.|.|-.+.
T Consensus 250 eaSGGI~-~~ni~~yA-~tGvD~Is~galt 277 (289)
T PRK07896 250 ESSGGLT-LDTAAAYA-ETGVDYLAVGALT 277 (289)
T ss_pred EEECCCC-HHHHHHHH-hcCCCEEEeChhh
Confidence 4444454 44555565 5999999987654
No 296
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.14 E-value=1.3e+02 Score=28.56 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=44.8
Q ss_pred hHHHHHHHHcC--CEEEEeccCCCHHHHHHHHHhcCccEEEeCC--hHHHHHHHHHhcCCcccccccCcccc
Q 040734 286 PGAVTKIKESK--LSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL--VQEITEAVYDMIKPAKVVEKEDNKSL 353 (361)
Q Consensus 286 ~~~v~~~~~~G--l~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~--p~~~~~~l~~~~~~~~~~~~~~~~~~ 353 (361)
.+.++.+++.. .+|-+= +++.++..+.+ ..|+|.|+-|. |+.+.+++.... .....+.+++..+
T Consensus 193 ~~av~~~r~~~~~~kIeVE--vetleea~eA~-~aGaDiImLDnmspe~l~~av~~~~-~~~~lEaSGGIt~ 260 (294)
T PRK06978 193 GAALDAAFALNAGVPVQIE--VETLAQLETAL-AHGAQSVLLDNFTLDMMREAVRVTA-GRAVLEVSGGVNF 260 (294)
T ss_pred HHHHHHHHHhCCCCcEEEE--cCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHhhc-CCeEEEEECCCCH
Confidence 36677777654 444444 67889998887 69999999997 788888887553 2445666665544
No 297
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.99 E-value=1.3e+02 Score=28.46 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=44.0
Q ss_pred HHHHHHHHc---CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC--hHHHHHHHHHhcCCcccccccCcccc
Q 040734 287 GAVTKIKES---KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL--VQEITEAVYDMIKPAKVVEKEDNKSL 353 (361)
Q Consensus 287 ~~v~~~~~~---Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~--p~~~~~~l~~~~~~~~~~~~~~~~~~ 353 (361)
+.++.++++ ..+|-+= |++.++...++ ..|+|.|+-|. |+.+.+++.... .....+.+++..+
T Consensus 181 ~av~~~r~~~~~~~kIeVE--v~slee~~ea~-~~gaDiImLDn~s~e~l~~av~~~~-~~~~leaSGgI~~ 248 (281)
T PRK06543 181 EALRHVRAQLGHTTHVEVE--VDRLDQIEPVL-AAGVDTIMLDNFSLDDLREGVELVD-GRAIVEASGNVNL 248 (281)
T ss_pred HHHHHHHHhCCCCCcEEEE--eCCHHHHHHHH-hcCCCEEEECCCCHHHHHHHHHHhC-CCeEEEEECCCCH
Confidence 556666665 2556555 78899998887 69999999997 777788877543 3335666666544
No 298
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=35.94 E-value=4.1e+02 Score=25.63 Aligned_cols=91 Identities=11% Similarity=0.040 Sum_probs=55.6
Q ss_pred HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc--cC--------Ch--H--HHHHH
Q 040734 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV--FR--------NP--G--AVTKI 292 (361)
Q Consensus 227 ~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~--~~--------~~--~--~v~~~ 292 (361)
+.++++++..|+.++..-.- .+.+++ ..+...|++++...+..- .. .+ . .+..+
T Consensus 129 e~I~~ir~~~p~~~vi~g~V-----------~t~e~a-~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~ 196 (326)
T PRK05458 129 NMIQHIKKHLPETFVIAGNV-----------GTPEAV-RELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWC 196 (326)
T ss_pred HHHHHHHhhCCCCeEEEEec-----------CCHHHH-HHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHH
Confidence 45777888877777654211 123333 334467777764331100 00 01 1 23444
Q ss_pred -HHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHH
Q 040734 293 -KESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQE 330 (361)
Q Consensus 293 -~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~ 330 (361)
+...+.|++-|-+.++.++.+++ .+|+|+|+...+-.
T Consensus 197 ~~~~~ipVIAdGGI~~~~Di~KaL-a~GA~aV~vG~~~~ 234 (326)
T PRK05458 197 AKAARKPIIADGGIRTHGDIAKSI-RFGATMVMIGSLFA 234 (326)
T ss_pred HHHcCCCEEEeCCCCCHHHHHHHH-HhCCCEEEechhhc
Confidence 44578899998899999999997 69999999876543
No 299
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=35.69 E-value=3.5e+02 Score=24.73 Aligned_cols=66 Identities=14% Similarity=0.050 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCcEEEcCCccc-----cCChHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcC-ccEEEeC
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGV-----FRNPGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMG-IDGVIVD 326 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~G-VdgI~TD 326 (361)
..+..+.+...|+..+.++...- -.+-++++.+.+. +++|++-|-+.+.+++.+++ ..| ||||+.-
T Consensus 157 ~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~-~~g~~dgv~~g 229 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAF-TKGKADAALAA 229 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCcceeeEh
Confidence 34455566677888766532110 0123566666544 68888887899999999987 466 9998763
No 300
>PF10210 MRP-S32: Mitochondrial 28S ribosomal protein S32; InterPro: IPR019346 This entry represents a family of short proteins; each approximately 100 amino acid residues in length. They are identified as the mitochondrial 28S ribosomal proteins S32.
Probab=35.59 E-value=28 Score=27.23 Aligned_cols=17 Identities=35% Similarity=0.605 Sum_probs=14.0
Q ss_pred EeeeeecCC-cEEEEcCC
Q 040734 91 FDVQVTKDG-WPVIFHDD 107 (361)
Q Consensus 91 ~DV~lTkDg-~~Vv~HD~ 107 (361)
..|-+|+|| .+||+|..
T Consensus 4 ~~iavT~dG~tIVcwHP~ 21 (96)
T PF10210_consen 4 VEIAVTSDGRTIVCWHPE 21 (96)
T ss_pred eeEEEecCCCEEEEeCCC
Confidence 457899999 89999964
No 301
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=35.31 E-value=3.9e+02 Score=25.23 Aligned_cols=113 Identities=20% Similarity=0.229 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCC--------HH----HHHHHHHHCC-CCCEEEEccCCCccccccccccHHHHHHHH
Q 040734 201 RVIQAILKIVFEFAENRPIIFSTFQ--------PD----AAVLIRKLQS-TYPVFFLTNGGTEIFYDVRRNSLEEAVKVC 267 (361)
Q Consensus 201 ~~v~~vl~~l~~~~~~~rv~~~Sf~--------~~----~l~~l~~~~p-~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~ 267 (361)
..+..+++.-++.+ .+++++... .. .++.+.+... .+|+++=.+-+. +++ .+..+
T Consensus 29 e~~~avi~AAee~~--sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~---------~~e-~i~~a 96 (286)
T PRK08610 29 EFTQAILEASQEEN--APVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGS---------SFE-KCKEA 96 (286)
T ss_pred HHHHHHHHHHHHHC--CCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCC---------CHH-HHHHH
Confidence 34566666665553 456665422 12 2222222322 367776554432 233 33456
Q ss_pred HhcCCcEEEcCCccc------cCChHHHHHHHHcCCEEEE----e-cc----------CCCHHHHHHHHHhcCccEEEe
Q 040734 268 LEGGLQGIVSEVKGV------FRNPGAVTKIKESKLSLLT----Y-GR----------LNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 268 ~~~~~~~i~~~~~~~------~~~~~~v~~~~~~Gl~v~~----w-~T----------vn~~~~~~~~~~~~GVdgI~T 325 (361)
.+.|+..+..+.+.+ ..|.+.++.+|..|+.|=+ = +. .-++++..++....|||.+-.
T Consensus 97 i~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAv 175 (286)
T PRK08610 97 IDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAP 175 (286)
T ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEe
Confidence 678998888776653 2367999999999988721 0 00 136788888876678886543
No 302
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=35.26 E-value=3.3e+02 Score=24.29 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=39.5
Q ss_pred cHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHc-CCEE-EEeccCCCHHHHHHHHH-hcCccEEEeCC
Q 040734 259 SLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKES-KLSL-LTYGRLNNVAEAVYMQH-LMGIDGVIVDL 327 (361)
Q Consensus 259 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~-Gl~v-~~w~Tvn~~~~~~~~~~-~~GVdgI~TD~ 327 (361)
+.++..+.++..+++.+.++... ++++++.+++. ++++ .+. .+.+..++..+.. .-.+|.++.|.
T Consensus 65 ~~~~i~~~~~~~~~d~vQLHg~e---~~~~~~~l~~~~~~~iik~i-~v~~~~~l~~~~~~~~~~d~~L~Ds 132 (210)
T PRK01222 65 SDEEIDEIVETVPLDLLQLHGDE---TPEFCRQLKRRYGLPVIKAL-RVRSAGDLEAAAAYYGDADGLLLDA 132 (210)
T ss_pred CHHHHHHHHHhcCCCEEEECCCC---CHHHHHHHHhhcCCcEEEEE-ecCCHHHHHHHHhhhccCCEEEEcC
Confidence 35666677778888888877543 67778888764 4544 344 4555444433321 12578888875
No 303
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=35.23 E-value=2.3e+02 Score=24.60 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCcEEEcCCcc------ccCChHHHHHHHHc-CCEEE-EeccCCCHHHHHHHHHhcCccEEEe
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKG------VFRNPGAVTKIKES-KLSLL-TYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~------~~~~~~~v~~~~~~-Gl~v~-~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
+.+.++.+.+.|+..+++.... .....+.++.+++. +..+. .. .+|++.+..+.+...|+|||+.
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l-~~~d~~~~~~~~~~~g~dgv~v 86 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHL-MVENPERYIEAFAKAGADIITF 86 (211)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEe-eeCCHHHHHHHHHHcCCCEEEE
Confidence 4455566666677766653210 00234566777654 24432 24 4566544433333578887643
No 304
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=34.79 E-value=3.7e+02 Score=24.76 Aligned_cols=112 Identities=20% Similarity=0.248 Sum_probs=67.7
Q ss_pred CCCEEEEc---CCHHHHHHHHHHCCCCCE-EEEccCCCccccccc---cccHHHHHHHHHhcCCcEEEcC-Ccc--cc--
Q 040734 216 NRPIIFST---FQPDAAVLIRKLQSTYPV-FFLTNGGTEIFYDVR---RNSLEEAVKVCLEGGLQGIVSE-VKG--VF-- 283 (361)
Q Consensus 216 ~~rv~~~S---f~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~d~~---~~~l~~~~~~~~~~~~~~i~~~-~~~--~~-- 283 (361)
..||++.| +|++.++.+.+.+++-.+ ++-...+......|. ...+.+..+.....++..+.+. ... .+
T Consensus 98 ~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G 177 (241)
T COG0106 98 VARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSG 177 (241)
T ss_pred CCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccccCC
Confidence 36888887 589999999998884333 332333222222222 1235555555566776554432 211 11
Q ss_pred CChHHHHHH-HHcCCEEEEeccCCCHHHHHHHHHhc-CccEEEeCCh
Q 040734 284 RNPGAVTKI-KESKLSLLTYGRLNNVAEAVYMQHLM-GIDGVIVDLV 328 (361)
Q Consensus 284 ~~~~~v~~~-~~~Gl~v~~w~Tvn~~~~~~~~~~~~-GVdgI~TD~p 328 (361)
++-+++.++ ..-.++|.+=|-+.+.++++.+. .. |+.|+|.-+.
T Consensus 178 ~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~-~~~G~~GvIvG~A 223 (241)
T COG0106 178 PNVDLVKELAEAVDIPVIASGGVSSLDDIKALK-ELSGVEGVIVGRA 223 (241)
T ss_pred CCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHH-hcCCCcEEEEehH
Confidence 233444443 55578888888899999998885 68 8999998653
No 305
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=34.76 E-value=1.6e+02 Score=26.50 Aligned_cols=57 Identities=11% Similarity=-0.004 Sum_probs=28.4
Q ss_pred HHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 265 KVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
+++...+++|+|+..... ....++.....+.-+.+- +.++..+..+.. ..|+|.|.-
T Consensus 81 dlA~~~~adGVHLg~~d~--~~~~~r~~~~~~~iiG~s-~~~s~~~a~~A~-~~gaDYv~~ 137 (221)
T PRK06512 81 RIAGRVKADGLHIEGNLA--ALAEAIEKHAPKMIVGFG-NLRDRHGAMEIG-ELRPDYLFF 137 (221)
T ss_pred HHHHHhCCCEEEECcccc--CHHHHHHhcCCCCEEEec-CCCCHHHHHHhh-hcCCCEEEE
Confidence 455567777877664321 112222222223334433 356666655553 477777743
No 306
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=34.58 E-value=3.1e+02 Score=23.77 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHCCCCCE--EEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEE
Q 040734 224 FQPDAAVLIRKLQSTYPV--FFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLT 301 (361)
Q Consensus 224 f~~~~l~~l~~~~p~~~~--~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~ 301 (361)
+....++.+++.. +.+. .+.++. ..+.++.+...|++++.++....-...+.++.+++.|+.+..
T Consensus 44 ~~~~~~~~i~~~~-~~~~~v~l~~~d------------~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~ 110 (211)
T cd00429 44 FGPPVVKALRKHT-DLPLDVHLMVEN------------PERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGV 110 (211)
T ss_pred cCHHHHHHHHhhC-CCcEEEEeeeCC------------HHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEE
Confidence 4567788888765 3343 233321 123355666889999766543211234778888999988766
Q ss_pred eccCCCH-HHHHHHHHhcCccEE
Q 040734 302 YGRLNNV-AEAVYMQHLMGIDGV 323 (361)
Q Consensus 302 w~Tvn~~-~~~~~~~~~~GVdgI 323 (361)
-...++. +.++.+. .++|.|
T Consensus 111 ~~~~~~~~~~~~~~~--~~~d~i 131 (211)
T cd00429 111 ALNPGTPVEVLEPYL--DEVDLV 131 (211)
T ss_pred EecCCCCHHHHHHHH--hhCCEE
Confidence 5122333 3344432 335555
No 307
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=34.46 E-value=1.5e+02 Score=25.89 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=28.9
Q ss_pred ChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 285 NPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 285 ~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
..++++.++++|+++++- |-+....+..++..+|++.++.
T Consensus 90 ~~~~l~~l~~~g~~~~Iv-S~~~~~~~~~~l~~~~i~~~~~ 129 (219)
T TIGR00338 90 AEELVKTLKEKGYKVAVI-SGGFDLFAEHVKDKLGLDAAFA 129 (219)
T ss_pred HHHHHHHHHHCCCEEEEE-CCCcHHHHHHHHHHcCCCceEe
Confidence 468899999999999888 6555555555555578766553
No 308
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.27 E-value=1.6e+02 Score=27.83 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=43.2
Q ss_pred HHHHHHHHc---CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC--hHHHHHHHHHhc--CCcccccccCccc
Q 040734 287 GAVTKIKES---KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL--VQEITEAVYDMI--KPAKVVEKEDNKS 352 (361)
Q Consensus 287 ~~v~~~~~~---Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~--p~~~~~~l~~~~--~~~~~~~~~~~~~ 352 (361)
+.+..+++. +.++.+= +++.++..+++ ..|+|.|+-|. |+.+.+++.... .+..+.+.+++..
T Consensus 184 ~av~~~r~~~~~~~~I~VE--v~tleea~eA~-~~GaD~I~LDn~~~e~l~~av~~~~~~~~~i~leAsGGIt 253 (288)
T PRK07428 184 EAITRIRQRIPYPLTIEVE--TETLEQVQEAL-EYGADIIMLDNMPVDLMQQAVQLIRQQNPRVKIEASGNIT 253 (288)
T ss_pred HHHHHHHHhCCCCCEEEEE--CCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 556667664 3555554 78899998887 69999999987 666777766432 4555566666553
No 309
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=33.73 E-value=2.2e+02 Score=27.64 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=36.9
Q ss_pred hHHHHHHHHcCCEEEEeccCCCHHHHHHHHH--hcCccEEE--eCChHHHHHHHHHhcC
Q 040734 286 PGAVTKIKESKLSLLTYGRLNNVAEAVYMQH--LMGIDGVI--VDLVQEITEAVYDMIK 340 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~--~~GVdgI~--TD~p~~~~~~l~~~~~ 340 (361)
..+|..+ ...-++++ .+++.++++.++. +.|+|||+ ||.|..+.++......
T Consensus 105 EnlIA~~-~~~~~l~a--~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~~~ 160 (344)
T PRK02290 105 ENLIADL-GQSGKIIA--GVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALIEE 160 (344)
T ss_pred HHHHhhh-cCCceEEE--EeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHHhc
Confidence 4666666 45555554 4788888766532 47999998 7899999988776544
No 310
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=33.62 E-value=3.4e+02 Score=24.03 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=31.4
Q ss_pred hHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 286 PGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 286 ~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
-+.++.+++. +++|.+=+-+.+++++.+++ ..|+|||+.-
T Consensus 166 ~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l-~~GadgV~vG 206 (219)
T cd04729 166 FELLKELRKALGIPVIAEGRINSPEQAAKAL-ELGADAVVVG 206 (219)
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHH-HCCCCEEEEc
Confidence 3566767654 78888776899999999987 5999999864
No 311
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=33.60 E-value=80 Score=31.52 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=32.7
Q ss_pred CceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEE--EEcCCHHHHHHHHHHCC
Q 040734 179 NVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPII--FSTFQPDAAVLIRKLQS 237 (361)
Q Consensus 179 ~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~--~~Sf~~~~l~~l~~~~p 237 (361)
+..+.||+-... +-..-++.+++.|.. |+- +|||+.+.++.+.+..+
T Consensus 123 ~~EitiE~nP~~-----------~~~e~~~~l~~~GvN-RiSlGVQsf~~~~lk~lgR~h~ 171 (416)
T COG0635 123 DAEITIEANPGT-----------VEAEKFKALKEAGVN-RISLGVQSFNDEVLKALGRIHD 171 (416)
T ss_pred CceEEEEeCCCC-----------CCHHHHHHHHHcCCC-EEEeccccCCHHHHHHhcCCCC
Confidence 478899984322 233456667777764 555 68999999999887654
No 312
>KOG2518 consensus 5'-3' exonuclease [Replication, recombination and repair]
Probab=33.59 E-value=46 Score=33.92 Aligned_cols=45 Identities=9% Similarity=0.171 Sum_probs=36.9
Q ss_pred hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 286 PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
..+|+.++.+|+..++= ...-.+++.++.+.-+||+|||..-+.+
T Consensus 131 ~~lI~~~r~~nVe~IVA-PyEADAQlayL~~~~~i~~IITEDSDLl 175 (556)
T KOG2518|consen 131 HKLIQYLRSQNVEYIVA-PYEADAQLAYLEREGIVDAIITEDSDLL 175 (556)
T ss_pred HHHHHHHHHcCCceEec-CccccchhHHHHhcCcceEEEecccccc
Confidence 47789999999999887 6677788888875567999999887765
No 313
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=33.57 E-value=1.8e+02 Score=27.30 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=46.5
Q ss_pred hHHHHHHHHcC---CEEEEeccCCCHHHHHHHHHhcCccEEEeCC--hHHHHHHHHHhc-CCcccccccCccccc
Q 040734 286 PGAVTKIKESK---LSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL--VQEITEAVYDMI-KPAKVVEKEDNKSLN 354 (361)
Q Consensus 286 ~~~v~~~~~~G---l~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~--p~~~~~~l~~~~-~~~~~~~~~~~~~~~ 354 (361)
.+.|+++++.- .++=+ -+++.+++.+++ ..|+|-|+-|+ |+.++++++.+. +.....+.+++..++
T Consensus 175 ~~Av~~aR~~~~~~~kIEV--Evesle~~~eAl-~agaDiImLDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ 246 (280)
T COG0157 175 TEAVRRARAAAPFTKKIEV--EVESLEEAEEAL-EAGADIIMLDNMSPEELKEAVKLLGLAGRALLEASGGITLE 246 (280)
T ss_pred HHHHHHHHHhCCCCceEEE--EcCCHHHHHHHH-HcCCCEEEecCCCHHHHHHHHHHhccCCceEEEEeCCCCHH
Confidence 35677777663 22333 478999999997 69999999997 788888887753 344556666666543
No 314
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.42 E-value=1.3e+02 Score=28.21 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=43.1
Q ss_pred hHHHHHHHHcC--CEEEEeccCCCHHHHHHHHHhcCccEEEeCC--hHHHHHHHHHhc----CCcccccccCccc
Q 040734 286 PGAVTKIKESK--LSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL--VQEITEAVYDMI----KPAKVVEKEDNKS 352 (361)
Q Consensus 286 ~~~v~~~~~~G--l~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~--p~~~~~~l~~~~----~~~~~~~~~~~~~ 352 (361)
.+.++.+++.. .+|-+= +++.++..+.+ ..|+|.|+-|. |+.+.+++.... ++....+.+|+.-
T Consensus 170 ~~av~~~r~~~~~~kIeVE--v~~leea~~a~-~agaDiI~LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~ 241 (278)
T PRK08385 170 EEAIRRAKEFSVYKVVEVE--VESLEDALKAA-KAGADIIMLDNMTPEEIREVIEALKREGLRERVKIEVSGGIT 241 (278)
T ss_pred HHHHHHHHHhCCCCcEEEE--eCCHHHHHHHH-HcCcCEEEECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCC
Confidence 35677777765 555554 78899998887 69999999987 666666665432 2444455555543
No 315
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=32.73 E-value=4.8e+02 Score=25.43 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCc-ccc-----CChHHHHHHHH-c
Q 040734 223 TFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVK-GVF-----RNPGAVTKIKE-S 295 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~-~~~-----~~~~~v~~~~~-~ 295 (361)
+++++.++.+++.. +.|+..- .. .+. +....+.+.|+++|.+.-+ .-. .+-+.+..+++ .
T Consensus 207 ~~~~~~l~~lr~~~-~~PvivK--gv---------~~~-~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~ 273 (351)
T cd04737 207 KLSPADIEFIAKIS-GLPVIVK--GI---------QSP-EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAV 273 (351)
T ss_pred CCCHHHHHHHHHHh-CCcEEEe--cC---------CCH-HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHh
Confidence 57889999999875 4666532 10 112 3345667889999876321 100 01133334432 2
Q ss_pred --CCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 296 --KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 296 --Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
.+.|++-|-|.+..++.+++ .+|+|+|+.-+|-..
T Consensus 274 ~~~i~vi~dGGIr~g~Di~kaL-alGA~~V~iGr~~l~ 310 (351)
T cd04737 274 NHRVPIIFDSGVRRGEHVFKAL-ASGADAVAVGRPVLY 310 (351)
T ss_pred CCCCeEEEECCCCCHHHHHHHH-HcCCCEEEECHHHHH
Confidence 38999998899999998987 699999999887665
No 316
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=32.58 E-value=2.9e+02 Score=24.97 Aligned_cols=65 Identities=17% Similarity=0.092 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCcEEEcCCc--c----ccCChHHHHHHHHcC--CEEEEeccCCCHHHHHHHHHhcCccEEE
Q 040734 260 LEEAVKVCLEGGLQGIVSEVK--G----VFRNPGAVTKIKESK--LSLLTYGRLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~--~----~~~~~~~v~~~~~~G--l~v~~w~Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
+.+.++.+...|++.+|++.- . +...+++++.+++.+ +.+-+-.-++++..+.+.+...|+|.|+
T Consensus 21 l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~it 93 (228)
T PTZ00170 21 LADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFT 93 (228)
T ss_pred HHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEE
Confidence 444455555666666665531 0 112456777777665 3332221245555554443457777655
No 317
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=31.74 E-value=2.6e+02 Score=26.38 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=40.7
Q ss_pred cCCcccCHHHHHHhCCCC-ceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHH
Q 040734 162 IDDSLCTLQEAFQQVDPN-VGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKL 235 (361)
Q Consensus 162 ~~~~iptL~EvL~~~~~~-~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~ 235 (361)
.+..+..+++-|+.+.-+ +-+++ |=+|.+..+.. ......+ ++.+.+.|.-+.+=+|.|+.+.|+.+.+.
T Consensus 84 ~~~~~~a~e~Sl~rLg~dyvDLyL-iHwP~~~~~~~--~~etw~a-lE~l~~~G~ir~IGVSNF~~~~L~~l~~~ 154 (280)
T COG0656 84 YDETLKALEASLKRLGLDYVDLYL-IHWPVPNKYVV--IEETWKA-LEELVDEGLIRAIGVSNFGVEHLEELLSL 154 (280)
T ss_pred cchHHHHHHHHHHHhCCCceeEEE-ECCCCCccCcc--HHHHHHH-HHHHHhcCCccEEEeeCCCHHHHHHHHHh
Confidence 345567788888877632 22222 22332100110 1133344 34455667778888999999999999887
No 318
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=31.66 E-value=1.9e+02 Score=29.65 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=41.5
Q ss_pred HHHHhcCCcEEEcCCccccCC--hHHHHHHHHc--CCEEEEeccCCCHHHHHHHHHhcCccEEE
Q 040734 265 KVCLEGGLQGIVSEVKGVFRN--PGAVTKIKES--KLSLLTYGRLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~--~~~v~~~~~~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
+...+.|++.|.++...-.-. -++|+++|+. +..|++= .|-+.++...++ ++|+|+|.
T Consensus 254 ~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g-~v~t~e~a~~a~-~aGaD~i~ 315 (505)
T PLN02274 254 EHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGG-NVVTMYQAQNLI-QAGVDGLR 315 (505)
T ss_pred HHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEe-cCCCHHHHHHHH-HcCcCEEE
Confidence 334467888888775421111 2689999986 5777666 688999998987 69999995
No 319
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=31.65 E-value=1.2e+02 Score=26.05 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=40.7
Q ss_pred ChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccE--EEeC---ChHHH--HHHHHHhc
Q 040734 285 NPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDG--VIVD---LVQEI--TEAVYDMI 339 (361)
Q Consensus 285 ~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdg--I~TD---~p~~~--~~~l~~~~ 339 (361)
..++++.++++|+++..- |-++..........+|++. |+.+ .|..- .++++.++
T Consensus 132 ~~~~l~~L~~~Gi~~~i~-TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~ 192 (215)
T PF00702_consen 132 AKEALQELKEAGIKVAIL-TGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQ 192 (215)
T ss_dssp HHHHHHHHHHTTEEEEEE-ESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHT
T ss_pred hhhhhhhhhccCcceeee-eccccccccccccccccccccccccccccccchhHHHHHHHHh
Confidence 468999999999999999 8777777777666789954 5544 36555 77777766
No 320
>PLN02334 ribulose-phosphate 3-epimerase
Probab=31.57 E-value=3.8e+02 Score=23.98 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCcEEEcCCccc------cCChHHHHHHHHcC-CEE-EEeccCCCHHHHHHHHHhcCccEE
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGV------FRNPGAVTKIKESK-LSL-LTYGRLNNVAEAVYMQHLMGIDGV 323 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~------~~~~~~v~~~~~~G-l~v-~~w~Tvn~~~~~~~~~~~~GVdgI 323 (361)
+.+.++.+...|+..++++.... ...++.++.+++.- ..+ .-+ .++++.+....+...|+|+|
T Consensus 22 l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhl-mv~~p~d~~~~~~~~gad~v 92 (229)
T PLN02334 22 LAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHL-MVTNPEDYVPDFAKAGASIF 92 (229)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEe-ccCCHHHHHHHHHHcCCCEE
Confidence 33444555566666666553211 11235666776652 221 223 45666665444345777777
No 321
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=31.54 E-value=1.9e+02 Score=24.97 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCEEEEeccCCCH-HHHHHHHHhcCccEEEeCChHHHHHHHHHhcCCc
Q 040734 287 GAVTKIKESKLSLLTYGRLNNV-AEAVYMQHLMGIDGVIVDLVQEITEAVYDMIKPA 342 (361)
Q Consensus 287 ~~v~~~~~~Gl~v~~w~Tvn~~-~~~~~~~~~~GVdgI~TD~p~~~~~~l~~~~~~~ 342 (361)
+.++.+++.|++|++. .+... ..++++...-|=..+....++.+.+.+.+...|.
T Consensus 127 ~~~~~l~~~~I~v~~I-giG~~~~~L~~ia~~tgG~~~~~~~~~~l~~~~~~~~~p~ 182 (183)
T cd01453 127 ETIDKLKKENIRVSVI-GLSAEMHICKEICKATNGTYKVILDETHLKELLLEHVTPP 182 (183)
T ss_pred HHHHHHHHcCcEEEEE-EechHHHHHHHHHHHhCCeeEeeCCHHHHHHHHHhcCCCC
Confidence 5678899999999999 56543 3355665455666777777888888888876654
No 322
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=31.52 E-value=1.2e+02 Score=28.88 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=31.3
Q ss_pred hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCcc----EEEeCC
Q 040734 286 PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGID----GVIVDL 327 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVd----gI~TD~ 327 (361)
.+.++.++++|+++.+| |-+....+...+...|++ .|+++.
T Consensus 152 ~EaL~~LkekGikLaIa-TS~~Re~v~~~L~~lGLd~YFdvIIs~G 196 (301)
T TIGR01684 152 YDSLTELKKRGCILVLW-SYGDRDHVVESMRKVKLDRYFDIIISGG 196 (301)
T ss_pred HHHHHHHHHCCCEEEEE-ECCCHHHHHHHHHHcCCCcccCEEEECC
Confidence 37889999999999999 777766666666668877 455543
No 323
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=31.29 E-value=2.9e+02 Score=25.85 Aligned_cols=71 Identities=8% Similarity=-0.004 Sum_probs=42.3
Q ss_pred HHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHH-h------cCccEEEeCChHHHHHHHH
Q 040734 265 KVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQH-L------MGIDGVIVDLVQEITEAVY 336 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~-~------~GVdgI~TD~p~~~~~~l~ 336 (361)
...+..|+....+..+-+....+.+..+.+.|+.|++| --.+.+++.+.+. . .+.+-|+-|--+...-+..
T Consensus 61 ~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A~-~get~eey~~~i~~~L~~~~~~~P~~iiDDG~Dl~~~lh~ 138 (268)
T PF05221_consen 61 ETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPVFAW-KGETDEEYWWCIEKALSWEDDHGPNLIIDDGGDLVNLLHT 138 (268)
T ss_dssp HHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEEEE--TT--HHHHHHHHHHCHSESTTCE-SEEEESSSHHHHHHHH
T ss_pred HHHHHcCCeEEEecCCCcccchHHHHHhccCCceEEEe-CCCCHHHHHHHHHHHhcCCCCCCcceeecchHHHHHHHHH
Confidence 44556777655444333333457777889999999999 5666777666542 1 2467888888777665444
No 324
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=31.28 E-value=2e+02 Score=25.16 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCC-CCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc
Q 040734 203 IQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQST-YPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG 281 (361)
Q Consensus 203 v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~-~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~ 281 (361)
+..+++.+++.....+++++++.+.-.+.+++..|. +...++-. |. ...+..+...+....+.+--..
T Consensus 37 ~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~-------D~----~~~~~rfl~~~~P~~~i~~EtE 105 (186)
T PF04413_consen 37 ARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPL-------DF----PWAVRRFLDHWRPDLLIWVETE 105 (186)
T ss_dssp HHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE----------SS----HHHHHHHHHHH--SEEEEES--
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCc-------cC----HHHHHHHHHHhCCCEEEEEccc
Confidence 444555555554566899999877777767766543 44444321 11 2223355556666554433222
Q ss_pred ccCChHHHHHHHHcCCEEEE-eccCCCH--HH-------HHHHHHhcCccEEEeCChHHHHHHHHH
Q 040734 282 VFRNPGAVTKIKESKLSLLT-YGRLNNV--AE-------AVYMQHLMGIDGVIVDLVQEITEAVYD 337 (361)
Q Consensus 282 ~~~~~~~v~~~~~~Gl~v~~-w~Tvn~~--~~-------~~~~~~~~GVdgI~TD~p~~~~~~l~~ 337 (361)
+ =|.++..++++|++++. -+.+.+. .. ++.++ ..+|.|++=..+.+.++.+-
T Consensus 106 l--WPnll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l--~~f~~i~aqs~~da~r~~~l 167 (186)
T PF04413_consen 106 L--WPNLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLL--SRFDRILAQSEADAERFRKL 167 (186)
T ss_dssp ----HHHHHH-----S-EEEEEE--------------HHHHHHG--GG-SEEEESSHHHHHHHHTT
T ss_pred c--CHHHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHH--HhCCEEEECCHHHHHHHHHc
Confidence 2 48999999999988854 2112211 11 11121 46899999888888776554
No 325
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=31.11 E-value=4.5e+02 Score=24.66 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=40.3
Q ss_pred HHHHHHhcCCcEEEcCCccc------cCChHHHHHHHHcCCEEEE----------------eccCCCHHHHHHHHHhcCc
Q 040734 263 AVKVCLEGGLQGIVSEVKGV------FRNPGAVTKIKESKLSLLT----------------YGRLNNVAEAVYMQHLMGI 320 (361)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~------~~~~~~v~~~~~~Gl~v~~----------------w~Tvn~~~~~~~~~~~~GV 320 (361)
.+..+...|++.+.++...+ ..+.++++.+|..|+.|-. . +..+++++.++....|+
T Consensus 89 ~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~-~~t~~eea~~f~~~tgv 167 (282)
T TIGR01859 89 SCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA-ELADPDEAEQFVKETGV 167 (282)
T ss_pred HHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc-ccCCHHHHHHHHHHHCc
Confidence 34455567777777665543 1245777788888877641 3 35688888888644788
Q ss_pred cEEE
Q 040734 321 DGVI 324 (361)
Q Consensus 321 dgI~ 324 (361)
|.+.
T Consensus 168 D~La 171 (282)
T TIGR01859 168 DYLA 171 (282)
T ss_pred CEEe
Confidence 8776
No 326
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=30.80 E-value=94 Score=30.10 Aligned_cols=26 Identities=8% Similarity=-0.124 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCEEEEeeeeecCCcE
Q 040734 76 ASFNSSAKYPLDFIEFDVQVTKDGWP 101 (361)
Q Consensus 76 ~Af~~A~~~Gad~vE~DV~lTkDg~~ 101 (361)
..-.+|+.+|||++=+-+|.|.|.-+
T Consensus 281 ~~a~AAvA~GAdGliIE~H~~pd~al 306 (335)
T PRK08673 281 PLALAAVAAGADGLIVEVHPDPEKAL 306 (335)
T ss_pred HHHHHHHHhCCCEEEEEecCCcccCC
Confidence 45577899999977777888877664
No 327
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=30.69 E-value=5.4e+02 Score=25.46 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=57.5
Q ss_pred CEEEEcCC--HHHHHHHHHHCCC--CCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHH
Q 040734 218 PIIFSTFQ--PDAAVLIRKLQST--YPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIK 293 (361)
Q Consensus 218 rv~~~Sf~--~~~l~~l~~~~p~--~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~ 293 (361)
++++.+.. ...++.+++.+|. ..+.|..... +-...+++..+.+...- ..+..-++.+.
T Consensus 28 P~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAvKAn----------~~~~il~~l~~~g~g~D-------v~S~gEl~~al 90 (394)
T COG0019 28 PVYVYDEATLRRNARELKSAFPGSGAKVFYAVKAN----------SNPAILRLLAEEGSGFD-------VASLGELELAL 90 (394)
T ss_pred CEEEEcHHHHHHHHHHHHHHhccCCceEEEEEcCC----------CCHHHHHHHHHhCCCce-------ecCHHHHHHHH
Confidence 45554433 2344555566665 3555544432 12233444444443211 12455566677
Q ss_pred HcCCE---EEEeccCCCHHHHHHHHHhcCccEEEeCChHHHHHHHHH
Q 040734 294 ESKLS---LLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYD 337 (361)
Q Consensus 294 ~~Gl~---v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~~ 337 (361)
++|.. ++..+...+.+++++.+ +.|+.-|..|....+.++-+.
T Consensus 91 ~aG~~~~~I~f~g~~ks~~ei~~a~-e~gi~~i~vdS~~El~~l~~~ 136 (394)
T COG0019 91 AAGFPPERIVFSGPAKSEEEIAFAL-ELGIKLINVDSEEELERLSAI 136 (394)
T ss_pred HcCCChhhEEECCCCCCHHHHHHHH-HcCCcEEEeCCHHHHHHHHHh
Confidence 77765 66665566777787776 588887888888887766543
No 328
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=30.62 E-value=41 Score=32.09 Aligned_cols=18 Identities=6% Similarity=0.063 Sum_probs=16.5
Q ss_pred ChHHHHHHHHcCCEEEEe
Q 040734 285 NPGAVTKIKESKLSLLTY 302 (361)
Q Consensus 285 ~~~~v~~~~~~Gl~v~~w 302 (361)
-..+|+++|++|+.|++|
T Consensus 72 L~~~I~eaHkrGlevHAW 89 (311)
T PF02638_consen 72 LEFMIEEAHKRGLEVHAW 89 (311)
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 368899999999999999
No 329
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=30.15 E-value=5.1e+02 Score=24.98 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=37.0
Q ss_pred ChHHHHHHHHcCC---EEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHHHHHH
Q 040734 285 NPGAVTKIKESKL---SLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVY 336 (361)
Q Consensus 285 ~~~~v~~~~~~Gl---~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~ 336 (361)
+..-++.+++.|. ++...+.+.+.+++.+++ ..||.-|..|.++.+..+.+
T Consensus 61 S~~E~~~~~~~G~~~~~I~~~~~~k~~~~l~~a~-~~g~~~i~vds~~el~~l~~ 114 (382)
T cd06839 61 SAGELALALEAGVPPEKILFAGPGKSDAELRRAI-EAGIGTINVESLEELERIDA 114 (382)
T ss_pred CHHHHHHHHHcCCCHHHEEEeCCCCCHHHHHHHH-HCCCCEEEECCHHHHHHHHH
Confidence 5666777888886 355553445778887776 58987899999988877654
No 330
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=30.13 E-value=1.3e+02 Score=27.53 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=34.2
Q ss_pred CChHHHHHHHHc-CC-EEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 284 RNPGAVTKIKES-KL-SLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 284 ~~~~~v~~~~~~-Gl-~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
.++++++.+++. +. ++.+=|-+++.+++++++ ..|+|+|++-.
T Consensus 170 ~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l-~~GAD~VVVGS 214 (232)
T PRK04169 170 VPPEMVKAVKKALDITPLIYGGGIRSPEQARELM-AAGADTIVVGN 214 (232)
T ss_pred CCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHH-HhCCCEEEECh
Confidence 357899999885 45 776665799999999976 59999999754
No 331
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=30.02 E-value=98 Score=28.41 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=25.1
Q ss_pred hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEE
Q 040734 286 PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
...++.+|+.|++|..+ .--++++++.. ..+|+|.|-
T Consensus 114 ~~~i~~L~~~gIrvSLF-iDP~~~qi~~A-~~~Gad~VE 150 (239)
T PF03740_consen 114 KPVIKRLKDAGIRVSLF-IDPDPEQIEAA-KELGADRVE 150 (239)
T ss_dssp HHHHHHHHHTT-EEEEE-E-S-HHHHHHH-HHTT-SEEE
T ss_pred HHHHHHHHhCCCEEEEE-eCCCHHHHHHH-HHcCCCEEE
Confidence 57889999999999988 43355556555 469999885
No 332
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=30.00 E-value=68 Score=23.84 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=18.3
Q ss_pred eeecCCcEEEEcCCCcccccCCccccccccccCHHHHhcc
Q 040734 94 QVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSY 133 (361)
Q Consensus 94 ~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~eL~~l 133 (361)
-+|.||.+.+||..=-.---=-+.+...+..|.-.+..+|
T Consensus 14 Gi~~dG~LslF~G~P~~~~vI~sFfqIdv~~Les~~~~~L 53 (75)
T PF08955_consen 14 GISEDGVLSLFEGPPGEEKVIQSFFQIDVEKLESSDHDQL 53 (75)
T ss_dssp EEETTTEEEEBSSS-STT-BS-------TTTS-HHHHHHH
T ss_pred EEcCCCcEEEEecCCCCCchheeeeecCHHHcCHhHHHHH
Confidence 3589999999996422100000012355555555555554
No 333
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.92 E-value=4e+02 Score=23.75 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=50.9
Q ss_pred HHHHHhcCCcEEEcCCccccCChHHHHHHHHc--CCEEEEeccCCCHHHHHHHHHhcCccEEEe-CChHHHHHHHHHhcC
Q 040734 264 VKVCLEGGLQGIVSEVKGVFRNPGAVTKIKES--KLSLLTYGRLNNVAEAVYMQHLMGIDGVIV-DLVQEITEAVYDMIK 340 (361)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T-D~p~~~~~~l~~~~~ 340 (361)
.+.+.+.|+..+-+.++.- ...+.++.+++. .+.|.+= ||=+.++.+.+. ..|.+.|+| ..-..+.++.+++..
T Consensus 26 ~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~~~~vGAG-TVl~~~~a~~a~-~aGA~FivsP~~~~~v~~~~~~~~i 102 (204)
T TIGR01182 26 AKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVPDALIGAG-TVLNPEQLRQAV-DAGAQFIVSPGLTPELAKHAQDHGI 102 (204)
T ss_pred HHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEEEE-eCCCHHHHHHHH-HcCCCEEECCCCCHHHHHHHHHcCC
Confidence 3444566777665554421 122556666554 3667777 899999998886 699999997 444555666666666
Q ss_pred Cccccc
Q 040734 341 PAKVVE 346 (361)
Q Consensus 341 ~~~~~~ 346 (361)
+.-++.
T Consensus 103 ~~iPG~ 108 (204)
T TIGR01182 103 PIIPGV 108 (204)
T ss_pred cEECCC
Confidence 554443
No 334
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.79 E-value=3.6e+02 Score=24.16 Aligned_cols=79 Identities=11% Similarity=0.080 Sum_probs=45.7
Q ss_pred HHHhcCCcEEEcCCccccCChHHHHHHHHc-----CCEEEEeccCCCHHHHHHHHHhcCccEEEe-CChHHHHHHHHHhc
Q 040734 266 VCLEGGLQGIVSEVKGVFRNPGAVTKIKES-----KLSLLTYGRLNNVAEAVYMQHLMGIDGVIV-DLVQEITEAVYDMI 339 (361)
Q Consensus 266 ~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~-----Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T-D~p~~~~~~l~~~~ 339 (361)
.+.+.|+..+-+.++.- -..+.++.+++. ++.|.+= ||-+.++.+..+ +.|.+.|+| .....+.++.++..
T Consensus 33 al~~~Gi~~iEit~~~~-~a~~~i~~l~~~~~~~p~~~vGaG-TV~~~~~~~~a~-~aGA~FivsP~~~~~v~~~~~~~~ 109 (213)
T PRK06552 33 AVIKGGIKAIEVTYTNP-FASEVIKELVELYKDDPEVLIGAG-TVLDAVTARLAI-LAGAQFIVSPSFNRETAKICNLYQ 109 (213)
T ss_pred HHHHCCCCEEEEECCCc-cHHHHHHHHHHHcCCCCCeEEeee-eCCCHHHHHHHH-HcCCCEEECCCCCHHHHHHHHHcC
Confidence 34455665554443321 112456666442 2566666 788888887775 588888886 44555566666666
Q ss_pred CCcccccc
Q 040734 340 KPAKVVEK 347 (361)
Q Consensus 340 ~~~~~~~~ 347 (361)
.|.-++..
T Consensus 110 i~~iPG~~ 117 (213)
T PRK06552 110 IPYLPGCM 117 (213)
T ss_pred CCEECCcC
Confidence 55555443
No 335
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=29.74 E-value=2.3e+02 Score=25.72 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCcEEEcCCccc-----cCChHHHHHHHH-cCCEEEEeccCCCHHHHHHHHH--hcCccEEEeCCh
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGV-----FRNPGAVTKIKE-SKLSLLTYGRLNNVAEAVYMQH--LMGIDGVIVDLV 328 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~v~~~~~-~Gl~v~~w~Tvn~~~~~~~~~~--~~GVdgI~TD~p 328 (361)
+.+..+.....|+..+.++.... =.+-++++.+++ .+++|++-|-+.+.+++.++.. ..|||||+.-+.
T Consensus 148 ~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 148 LWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred HHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHH
Confidence 44555566677877665543211 013366666655 4799999988999999988742 249999997653
No 336
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=29.73 E-value=2.8e+02 Score=26.78 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=40.5
Q ss_pred HhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 268 LEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 268 ~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
...++..+.+.... ...++++.+|..|..|..= +-+..++.++. ++|+|+|+..-+
T Consensus 101 ~~~~vpvv~~~~g~--~~~~~i~~~~~~g~~v~~~--v~~~~~A~~~~-~~G~d~vI~~g~ 156 (336)
T COG2070 101 EGAGVPVVSTSFGA--PPAEFVARLKAAGIKVIHS--VITVREALKAE-RAGADAVIAQGA 156 (336)
T ss_pred hcCCCCEEeccCCC--CcHHHHHHHHHcCCeEEEE--eCCHHHHHHHH-hCCCCEEEecCC
Confidence 34477666655542 3789999999999888765 44566777775 699999998654
No 337
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.67 E-value=90 Score=30.42 Aligned_cols=48 Identities=13% Similarity=0.029 Sum_probs=31.7
Q ss_pred ccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHHHHhcc
Q 040734 69 AIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSY 133 (361)
Q Consensus 69 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~eL~~l 133 (361)
.+.+.+...-.+|+.+|||++=+-+|.|.|.-+ .++ ...++.++|++|
T Consensus 283 G~sd~~~~~a~AAva~GAdGliIE~H~~pd~Al-----------sD~------~qsl~p~~~~~l 330 (352)
T PRK13396 283 GKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKAL-----------SDG------PQSLTPDRFDRL 330 (352)
T ss_pred CcHHHHHHHHHHHHhhCCCeEEEEecCCcccCC-----------Chh------hhcCCHHHHHHH
Confidence 335556777788999999976666777766542 123 255677777665
No 338
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=29.57 E-value=1.7e+02 Score=25.80 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=21.5
Q ss_pred HHHHHcCCEEEE--eccCCCHHHHHHHHHhcCccEEE
Q 040734 290 TKIKESKLSLLT--YGRLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 290 ~~~~~~Gl~v~~--w~Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
+.+.+.|+..+. | -.|..+-++.++ +.|.+.|+
T Consensus 108 ~~~~~~gl~~~~PLW-~~~~~~ll~e~~-~~g~~~~i 142 (194)
T cd01994 108 RVCERLGLEPLAPLW-GRDQEELLREMI-EAGFKAII 142 (194)
T ss_pred HHHHHcCCEEEeccc-CCCHHHHHHHHH-HcCCeEEE
Confidence 445777777754 7 456655566665 57877776
No 339
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=29.55 E-value=4.1e+02 Score=23.64 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCc
Q 040734 204 QAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVK 280 (361)
Q Consensus 204 ~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~ 280 (361)
+..++.+.+.+.. .+++ -|+..+..+++..|++++..-+...- .-...+++....|+..+.++..
T Consensus 5 ~~~l~~l~~~g~d-gi~v--~~~g~~~~~k~~~~~~~i~~~~~~nv---------~N~~s~~~~~~~G~~~i~ls~E 69 (233)
T PF01136_consen 5 EKYLDKLKELGVD-GILV--SNPGLLELLKELGPDLKIIADYSLNV---------FNSESARFLKELGASRITLSPE 69 (233)
T ss_pred HHHHHHHHhCCCC-EEEE--cCHHHHHHHHHhCCCCcEEEecCccC---------CCHHHHHHHHHcCCCEEEECcc
Confidence 3445555555543 3444 47888888888888887765443221 0123345555667776666654
No 340
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=29.36 E-value=4.3e+02 Score=23.92 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=51.7
Q ss_pred CEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc-cCChHHHHHHHHcC
Q 040734 218 PIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV-FRNPGAVTKIKESK 296 (361)
Q Consensus 218 rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~-~~~~~~v~~~~~~G 296 (361)
+..+++-+.+.++...+. =++|...+..... . ....++..+..+..++.+++.-.-.. ......-+.+.+.|
T Consensus 39 s~~~H~~~~~~~~~qA~a-lgipl~~~~~~~~--~----e~~~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~lg 111 (223)
T TIGR00290 39 SYMFHGVNAHLTDLQAES-IGIPLIKLYTEGT--E----EDEVEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRELG 111 (223)
T ss_pred cccccccCHHHHHHHHHH-cCCCeEEeecCCC--c----cHHHHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhcC
Confidence 455555566655443333 3566533221111 0 11233334445556777665432111 11233445567888
Q ss_pred CEEEE--eccCCCHHHHHHHHHhcCccEEE
Q 040734 297 LSLLT--YGRLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 297 l~v~~--w~Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
+..+. | -.|..+-+.+++ +.|++.++
T Consensus 112 l~~~~PLW-~~~~~~ll~e~i-~~G~~aiI 139 (223)
T TIGR00290 112 LKSFAPLW-HRDPEKLMEEFV-EEKFEARI 139 (223)
T ss_pred CEEecccc-CCCHHHHHHHHH-HcCCeEEE
Confidence 88864 8 567766677776 68988888
No 341
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.95 E-value=4.9e+02 Score=24.44 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=49.9
Q ss_pred HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHH----HHHHHHcC----CE
Q 040734 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGA----VTKIKESK----LS 298 (361)
Q Consensus 227 ~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~----v~~~~~~G----l~ 298 (361)
..++.+|+..|..++-.= ..+++++.+.+ ..|++.|.++.- +++. +..+++.| +.
T Consensus 171 ~av~~~r~~~~~~kIeVE------------v~~leea~~a~-~agaDiI~LDn~----~~e~l~~~v~~l~~~~~~~~~~ 233 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEVE------------VESLEDALKAA-KAGADIIMLDNM----TPEEIREVIEALKREGLRERVK 233 (278)
T ss_pred HHHHHHHHhCCCCcEEEE------------eCCHHHHHHHH-HcCcCEEEECCC----CHHHHHHHHHHHHhcCcCCCEE
Confidence 455666666665443221 13566666655 678888876632 4443 34444433 44
Q ss_pred EEEeccCCCHHHHHHHHHhcCccEEEeCChH
Q 040734 299 LLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQ 329 (361)
Q Consensus 299 v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~ 329 (361)
+-+=|.+| .+.+..+. ..|||.|.|-.+.
T Consensus 234 leaSGGI~-~~ni~~yA-~tGvD~Is~galt 262 (278)
T PRK08385 234 IEVSGGIT-PENIEEYA-KLDVDVISLGALT 262 (278)
T ss_pred EEEECCCC-HHHHHHHH-HcCCCEEEeChhh
Confidence 55555564 55666665 5999999987754
No 342
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=28.82 E-value=4.3e+02 Score=23.70 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=41.8
Q ss_pred cHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcC-CEEE-EeccCCCHH--HHHHHHHhcCccEEEeCCh
Q 040734 259 SLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESK-LSLL-TYGRLNNVA--EAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 259 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~G-l~v~-~w~Tvn~~~--~~~~~~~~~GVdgI~TD~p 328 (361)
++++..+.+...+++.+.++... ++++++.+++.+ +.|+ +. .+.... +..... ..-+|.++-|.+
T Consensus 63 ~~~~i~~i~~~~~ld~VQlHG~e---~~~~~~~l~~~~~~~v~kai-~v~~~~~~~~~~~~-~~~~d~~LlDa~ 131 (208)
T COG0135 63 SIEEILEIAEELGLDAVQLHGDE---DPEYIDQLKEELGVPVIKAI-SVSEEGDLELAARE-EGPVDAILLDAK 131 (208)
T ss_pred CHHHHHHHHHhcCCCEEEECCCC---CHHHHHHHHhhcCCceEEEE-EeCCccchhhhhhc-cCCccEEEEcCC
Confidence 46667778888889998888754 899999999886 4332 22 244322 222221 245888888775
No 343
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=28.30 E-value=3.7e+02 Score=25.65 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=30.0
Q ss_pred HHHHHHHHc---CCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 287 GAVTKIKES---KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 287 ~~v~~~~~~---Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
+.+..+++. ++.|..=|-|.+.+++.+++ ..|+|+|+.-
T Consensus 268 ~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l-~aGAd~V~vg 309 (327)
T cd04738 268 EVLRELYKLTGGKIPIIGVGGISSGEDAYEKI-RAGASLVQLY 309 (327)
T ss_pred HHHHHHHHHhCCCCcEEEECCCCCHHHHHHHH-HcCCCHHhcc
Confidence 566667665 47888776899999999998 4899988754
No 344
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=28.11 E-value=3.3e+02 Score=25.01 Aligned_cols=106 Identities=11% Similarity=0.098 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc--ccCChHHHHHHHHcCCEEEEe
Q 040734 225 QPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG--VFRNPGAVTKIKESKLSLLTY 302 (361)
Q Consensus 225 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~Gl~v~~w 302 (361)
+.+.++.+++..++.....+..... .. .+.++.+...+++.+.+.... ...-.+.++.++++|+.+.+.
T Consensus 61 ~~e~i~~~~~~~~~~~~~~~~~~~~--------~~-~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 61 DEEYLEAAAEALKQAKLGVLLLPGI--------GT-VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred hHHHHHHHHHhccCCEEEEEecCCc--------cC-HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 3466677766666655543331111 01 123455556677765533221 112357888999999888554
Q ss_pred c---cCCCHHHHHHH---HHhcCccEEE-eC-----ChHHHHHHHHHhc
Q 040734 303 G---RLNNVAEAVYM---QHLMGIDGVI-VD-----LVQEITEAVYDMI 339 (361)
Q Consensus 303 ~---Tvn~~~~~~~~---~~~~GVdgI~-TD-----~p~~~~~~l~~~~ 339 (361)
. +-.+++.+.++ +.++|+|.|. .| .|..+.++++...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~ 180 (263)
T cd07943 132 LMMSHMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALR 180 (263)
T ss_pred EEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHH
Confidence 1 01234444332 2357988765 34 4777777766543
No 345
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=27.80 E-value=1.1e+02 Score=27.56 Aligned_cols=66 Identities=12% Similarity=0.027 Sum_probs=39.6
Q ss_pred HHHHHHhcCCcEEEcCCcc--cc---------CChHHHHHHHHcCCEEEEeccCCCHH--------HHH---HHHHhcCc
Q 040734 263 AVKVCLEGGLQGIVSEVKG--VF---------RNPGAVTKIKESKLSLLTYGRLNNVA--------EAV---YMQHLMGI 320 (361)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~--~~---------~~~~~v~~~~~~Gl~v~~w~Tvn~~~--------~~~---~~~~~~GV 320 (361)
..+.+.+.|++.+..-.++ +. .-..+++.+|+.|+++++|....+.+ .+. ++..++|+
T Consensus 81 ~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~Ga 160 (236)
T PF01791_consen 81 EVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGA 160 (236)
T ss_dssp HHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCC
Confidence 3456678888876433322 10 01377888899999999994444333 122 33336899
Q ss_pred cEEEeCCh
Q 040734 321 DGVIVDLV 328 (361)
Q Consensus 321 dgI~TD~p 328 (361)
|.|=|..+
T Consensus 161 D~vKt~tg 168 (236)
T PF01791_consen 161 DFVKTSTG 168 (236)
T ss_dssp SEEEEE-S
T ss_pred CEEEecCC
Confidence 99999999
No 346
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=27.77 E-value=5.7e+02 Score=24.82 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCC
Q 040734 204 QAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEV 279 (361)
Q Consensus 204 ~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~ 279 (361)
...++.+.+.+. +.+++ -|+.++..+++..|++|+.+-+...- .-.+.+++..+.|+.-+++.-
T Consensus 82 ~~~l~~l~e~Gv-Daviv--~Dpg~i~l~~e~~p~l~ih~S~q~~v---------~N~~~~~f~~~~G~~rvVl~r 145 (347)
T COG0826 82 ERYLDRLVELGV-DAVIV--ADPGLIMLARERGPDLPIHVSTQANV---------TNAETAKFWKELGAKRVVLPR 145 (347)
T ss_pred HHHHHHHHHcCC-CEEEE--cCHHHHHHHHHhCCCCcEEEeeeEec---------CCHHHHHHHHHcCCEEEEeCc
Confidence 344444555543 34444 58999999999999998865432211 112345666677765555443
No 347
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=27.77 E-value=3.1e+02 Score=26.31 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCcEEEcCCccc-----c---------CChHHHHHHHHc--CCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 262 EAVKVCLEGGLQGIVSEVKGV-----F---------RNPGAVTKIKES--KLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~-----~---------~~~~~v~~~~~~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
+.++.+...|++.+.++...- . ..-+.+..+++. .+.|++-|-|.+.+++.+++. |+|||+.
T Consensus 155 ~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~--~aDgVmI 232 (333)
T PRK11815 155 DFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ--HVDGVMI 232 (333)
T ss_pred HHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--cCCEEEE
Confidence 344555566777776653210 0 123567777775 689988888999999999873 7999997
Q ss_pred CC-----hHHHHHHHH
Q 040734 326 DL-----VQEITEAVY 336 (361)
Q Consensus 326 D~-----p~~~~~~l~ 336 (361)
-+ |..+.++..
T Consensus 233 GRa~l~nP~~~~~~~~ 248 (333)
T PRK11815 233 GRAAYHNPYLLAEVDR 248 (333)
T ss_pred cHHHHhCCHHHHHHHH
Confidence 65 555555544
No 348
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=27.66 E-value=1.9e+02 Score=28.06 Aligned_cols=67 Identities=12% Similarity=0.170 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCcEEEcCCccccCC-------hHHHHHHHHc------CCEEEEeccCCC---------HHHHHHHHHh
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGVFRN-------PGAVTKIKES------KLSLLTYGRLNN---------VAEAVYMQHL 317 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~v~~~~~~------Gl~v~~w~Tvn~---------~~~~~~~~~~ 317 (361)
.+..+++++.+|++|+.++....... ..+++.+++. |..|+-|..+.. ..+..+...
T Consensus 92 a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln~~N~~ff- 170 (339)
T cd06547 92 ADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELNSKNKPFF- 170 (339)
T ss_pred HHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhhHHHHHHH-
Confidence 45677889999999998887754311 2577777666 677777743321 222222221
Q ss_pred cCccEEEeCC
Q 040734 318 MGIDGVIVDL 327 (361)
Q Consensus 318 ~GVdgI~TD~ 327 (361)
.-+|+|++|+
T Consensus 171 ~~~D~~FlNY 180 (339)
T cd06547 171 DVCDGIFLNY 180 (339)
T ss_pred hhhcceeEec
Confidence 4699999987
No 349
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=27.60 E-value=4.7e+02 Score=23.73 Aligned_cols=95 Identities=14% Similarity=0.054 Sum_probs=54.5
Q ss_pred EcCCHHHHHHHHHHCCCCCE-EEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEE
Q 040734 222 STFQPDAAVLIRKLQSTYPV-FFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLL 300 (361)
Q Consensus 222 ~Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~ 300 (361)
.+|.+..++.+++.. ..|. ..|.-.. .+..++...+.|++.|..++....-..+.++.+|+.|.+..
T Consensus 46 iTfGp~~v~~l~~~t-~~p~DvHLMV~~-----------p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaG 113 (220)
T COG0036 46 ITFGPPVVKALRKIT-DLPLDVHLMVEN-----------PDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAG 113 (220)
T ss_pred cccCHHHHHHHhhcC-CCceEEEEecCC-----------HHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEE
Confidence 368899999999843 3333 2332221 12223333467888888887632123589999999999996
Q ss_pred EeccCCCHHH-HHHHHHhcCccEEEeCCh
Q 040734 301 TYGRLNNVAE-AVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 301 ~w~Tvn~~~~-~~~~~~~~GVdgI~TD~p 328 (361)
+=--..++-+ +.+++.....=-+||=+|
T Consensus 114 v~lnP~Tp~~~i~~~l~~vD~VllMsVnP 142 (220)
T COG0036 114 LVLNPATPLEALEPVLDDVDLVLLMSVNP 142 (220)
T ss_pred EEECCCCCHHHHHHHHhhCCEEEEEeECC
Confidence 5413445544 444543233333456554
No 350
>COG2923 DsrF Uncharacterized protein involved in the oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=27.55 E-value=70 Score=25.92 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=40.8
Q ss_pred CcceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCC
Q 040734 45 PKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDD 107 (361)
Q Consensus 45 ~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~ 107 (361)
++..++.+++-.+ -++..+++..++...+-.-|.+|-+-.||++-+.-+.
T Consensus 2 k~~afvf~~aP~G-------------s~~~rEgLda~la~~a~~~~~~vffi~DGV~~L~~~Q 51 (118)
T COG2923 2 KKLAFVFRTAPHG-------------SEAGREGLDAALATSAFSLETGVFFIGDGVFQLLPGQ 51 (118)
T ss_pred ceEEEEEecCCCc-------------cHHHHhHHHHHHHHhhcccccceEEEccchhhhcCCC
Confidence 4556677776654 5799999999999999999999999999998776543
No 351
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=27.54 E-value=4.5e+02 Score=25.83 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=56.6
Q ss_pred HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc--------c------cC----ChHH
Q 040734 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG--------V------FR----NPGA 288 (361)
Q Consensus 227 ~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~--------~------~~----~~~~ 288 (361)
..+..||+..|..|+++=..... ..+.....+.+.+++.|+++-.. . +. -...
T Consensus 192 ~~I~~Lr~~~~~~pVgvKl~~~~---------~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a 262 (368)
T PF01645_consen 192 QLIEELRELNPGKPVGVKLVAGR---------GVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARA 262 (368)
T ss_dssp HHHHHHHHH-TTSEEEEEEE-ST---------THHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHH
T ss_pred HHHHHHHhhCCCCcEEEEECCCC---------cHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHH
Confidence 56778888889999887554332 23333344667788887766431 0 00 1244
Q ss_pred HHHHHHcC----CEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHH
Q 040734 289 VTKIKESK----LSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEIT 332 (361)
Q Consensus 289 v~~~~~~G----l~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~ 332 (361)
.+.+.+.| +.+.+-|-+.++.++.+.+ .+|.|+|-...+..+.
T Consensus 263 ~~~L~~~glr~~V~Li~sGgl~t~~dv~kal-aLGAD~v~igt~~liA 309 (368)
T PF01645_consen 263 HQALVKNGLRDRVSLIASGGLRTGDDVAKAL-ALGADAVYIGTAALIA 309 (368)
T ss_dssp HHHHHCTT-CCCSEEEEESS--SHHHHHHHH-HCT-SEEE-SHHHHHH
T ss_pred HHHHHHcCCCCceEEEEeCCccCHHHHHHHH-hcCCCeeEecchhhhh
Confidence 45555556 4566666788999999987 7999999888776653
No 352
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=27.46 E-value=2.2e+02 Score=27.69 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=34.6
Q ss_pred HHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEE
Q 040734 264 VKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
...+...+++|+|+....+ .....+.+...+. ++.. ++++.+++.... ..|+|.|.
T Consensus 210 vdlAl~~~aDGVHLgq~dl--~~~~aR~llg~~~-iIG~-S~Hs~~e~~~A~-~~GaDYI~ 265 (347)
T PRK02615 210 VDIALAVDADGVHLGQEDL--PLAVARQLLGPEK-IIGR-STTNPEEMAKAI-AEGADYIG 265 (347)
T ss_pred HHHHHHcCCCEEEeChhhc--CHHHHHHhcCCCC-EEEE-ecCCHHHHHHHH-HcCCCEEE
Confidence 3566678888998765432 2232332222233 3444 578899988876 58999986
No 353
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=27.23 E-value=5.5e+02 Score=27.33 Aligned_cols=47 Identities=4% Similarity=-0.029 Sum_probs=35.4
Q ss_pred hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEE---eCChHHHHHH
Q 040734 286 PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVI---VDLVQEITEA 334 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~---TD~p~~~~~~ 334 (361)
..++..+++.|++|++= -|++.+++..+. .+|||.+. -..|..+.++
T Consensus 738 ~~~~~~~~~~~i~via~-gVe~~~~~~~l~-~~g~~~~QG~~~~~p~~~~~~ 787 (799)
T PRK11359 738 EAITSIGQSLNLTVVAE-GVETKEQFEMLR-KIHCRVIQGYFFSRPLPAEEI 787 (799)
T ss_pred HHHHHHHHHCCCeEEEE-cCCCHHHHHHHH-hcCCCEEeeCeecCCCCHHHH
Confidence 36677789999999998 699999998885 79999555 4445444433
No 354
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=26.89 E-value=4.8e+02 Score=24.82 Aligned_cols=85 Identities=15% Similarity=0.100 Sum_probs=51.8
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHH---cCCEEEEe
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKE---SKLSLLTY 302 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~---~Gl~v~~w 302 (361)
...++.+++..|..++..-. .+++++.+.+ ..|++.|.++.- +++.++++-+ ..+.+-+=
T Consensus 196 ~~av~~~r~~~~~~kIeVEv------------~sleea~ea~-~~gaDiI~LDn~----s~e~~~~av~~~~~~~~ieaS 258 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEVEV------------ENLDELDQAL-KAGADIIMLDNF----TTEQMREAVKRTNGRALLEVS 258 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEe------------CCHHHHHHHH-HcCCCEEEeCCC----ChHHHHHHHHhhcCCeEEEEE
Confidence 45677788887776643322 3467766665 688888887642 4444444332 23455555
Q ss_pred ccCCCHHHHHHHHHhcCccEEEeCChH
Q 040734 303 GRLNNVAEAVYMQHLMGIDGVIVDLVQ 329 (361)
Q Consensus 303 ~Tvn~~~~~~~~~~~~GVdgI~TD~p~ 329 (361)
|.+|- +.+..+. ..|||.|.|-.+.
T Consensus 259 GGI~~-~ni~~yA-~tGVD~Is~galt 283 (296)
T PRK09016 259 GNVTL-ETLREFA-ETGVDFISVGALT 283 (296)
T ss_pred CCCCH-HHHHHHH-hcCCCEEEeCccc
Confidence 55653 4455554 5999999987654
No 355
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=26.88 E-value=5.5e+02 Score=24.30 Aligned_cols=116 Identities=9% Similarity=0.081 Sum_probs=58.9
Q ss_pred CcccCHHHHHHhCC-----CCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCC-
Q 040734 164 DSLCTLQEAFQQVD-----PNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQS- 237 (361)
Q Consensus 164 ~~iptL~EvL~~~~-----~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p- 237 (361)
.+=|-++|-|+++. -++.+.-|+=.+. -++.+.+.+ +=+.+..|+-..-..|+....
T Consensus 67 FrG~G~eeGL~iL~~vk~~~glpvvTeV~~~~-----------q~~~vae~~------DilQIgAr~~rqtdLL~a~~~t 129 (290)
T PLN03033 67 FRGPGMAEGLKILEKVKVAYDLPIVTDVHESS-----------QCEAVGKVA------DIIQIPAFLCRQTDLLVAAAKT 129 (290)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCceEEeeCCHH-----------HHHHHHhhC------cEEeeCcHHHHHHHHHHHHHcc
Confidence 44566778787775 2688888887642 233333322 345666676444333333221
Q ss_pred CCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEE-------EcCCccccCChHHHHHHHHcCCEEEEe
Q 040734 238 TYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGI-------VSEVKGVFRNPGAVTKIKESKLSLLTY 302 (361)
Q Consensus 238 ~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i-------~~~~~~~~~~~~~v~~~~~~Gl~v~~w 302 (361)
+-|+ .+-.+..... ..+..+.++....|..-+ ...++.+..+-..+..+++.|++|++-
T Consensus 130 gkpV-~lKkGq~~t~-----~e~~~aaeki~~~GN~~viLcERG~tFgy~~lv~D~r~ip~mk~~~lPVI~D 195 (290)
T PLN03033 130 GKII-NIKKGQFCAP-----SVMRNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVAD 195 (290)
T ss_pred CCeE-EeCCCCCCCH-----HHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEe
Confidence 2233 2222211111 113344555555554322 223333334556677778899999876
No 356
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=26.73 E-value=3.3e+02 Score=26.32 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEec------cCCCHHHHHHHHHhcC---ccEEEeCChHH
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYG------RLNNVAEAVYMQHLMG---IDGVIVDLVQE 330 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~------Tvn~~~~~~~~~~~~G---VdgI~TD~p~~ 330 (361)
++..+++|++.+++.+.+..+..+ -.+..+...+.|.+|.+=. ..||.......+.+.| ......+.++.
T Consensus 55 v~~~l~~C~~~~Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~e 133 (329)
T PF15632_consen 55 VDWCLDFCKEHGIDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTADE 133 (329)
T ss_pred HHHHHHHHHHhCCeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCHHH
Confidence 455677888888888776654321 2233445566788877620 1344444433333445 35666777777
Q ss_pred HHHHHHHhcCC
Q 040734 331 ITEAVYDMIKP 341 (361)
Q Consensus 331 ~~~~l~~~~~~ 341 (361)
+.+++.++..+
T Consensus 134 l~~a~~~l~~~ 144 (329)
T PF15632_consen 134 LKAAYEELRFP 144 (329)
T ss_pred HHHHHHhcCCC
Confidence 77777665443
No 357
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=26.44 E-value=5.9e+02 Score=24.52 Aligned_cols=106 Identities=9% Similarity=0.120 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCC--ccccCChHHHHHHHHcCCEEEEe
Q 040734 225 QPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEV--KGVFRNPGAVTKIKESKLSLLTY 302 (361)
Q Consensus 225 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~~~~Gl~v~~w 302 (361)
+.+.++.++...++..+..+...+. ... +.++.+...+++.+.+.. +........++.+|++|+.|.+.
T Consensus 64 ~~e~i~~~~~~~~~~~~~~ll~pg~--------~~~-~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 64 DEEYIEAAAEVVKQAKIAALLLPGI--------GTV-DDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHHHHHHhCCCCEEEEEeccCc--------ccH-HHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 4667777766666665544332211 112 234556677777654332 22122468899999999988764
Q ss_pred c---cCCCHHHHHH---HHHhcCccEEE-eCC-----hHHHHHHHHHhc
Q 040734 303 G---RLNNVAEAVY---MQHLMGIDGVI-VDL-----VQEITEAVYDMI 339 (361)
Q Consensus 303 ~---Tvn~~~~~~~---~~~~~GVdgI~-TD~-----p~~~~~~l~~~~ 339 (361)
. +..+++.+.+ .+.++|+|.|. +|. |..+.++++...
T Consensus 135 l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~ 183 (337)
T PRK08195 135 LMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALR 183 (337)
T ss_pred EEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 1 1224444332 22358999876 454 777776665543
No 358
>PRK11059 regulatory protein CsrD; Provisional
Probab=26.32 E-value=1e+02 Score=32.49 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=33.9
Q ss_pred hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC
Q 040734 286 PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL 327 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~ 327 (361)
..++..+|..|++|++= .|.+.+++..+. .+|||++.=.+
T Consensus 593 ~sli~~a~~~~i~viAe-gVEt~~~~~~l~-~lGvd~~QG~~ 632 (640)
T PRK11059 593 RSLVGACAGTETQVFAT-GVESREEWQTLQ-ELGVSGGQGDF 632 (640)
T ss_pred HHHHHHHHHCCCeEEEE-EeCCHHHHHHHH-HhCCCeeecCc
Confidence 46788899999999999 699999998885 79999886543
No 359
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=26.30 E-value=2.5e+02 Score=28.45 Aligned_cols=137 Identities=14% Similarity=0.107 Sum_probs=80.9
Q ss_pred CHHHHHHhCCCCceEEEEEecCCccch---hhhHHHHHHHHHHHHHHHhcC------CCCEEEEcCCHHHHHHHHHHCCC
Q 040734 168 TLQEAFQQVDPNVGFNVELKFDDHIVY---EQDYLIRVIQAILKIVFEFAE------NRPIIFSTFQPDAAVLIRKLQST 238 (361)
Q Consensus 168 tL~EvL~~~~~~~~l~iEiK~~~~~~~---~~~~~~~~v~~vl~~l~~~~~------~~rv~~~Sf~~~~l~~l~~~~p~ 238 (361)
.|..+|. .++..++-|+|..++..- ...+. ..+.+.. +.+. .++-+| .-+.+.|+.+++.. .
T Consensus 40 ~~~~al~--~~~~~vIaEiKraSPs~G~i~~~~d~----~~~a~~y-~~gA~aiSVlTe~~~F-~Gs~~~l~~vr~~v-~ 110 (454)
T PRK09427 40 SFYDALK--GPKTAFILECKKASPSKGLIRDDFDP----AEIARVY-KHYASAISVLTDEKYF-QGSFDFLPIVRAIV-T 110 (454)
T ss_pred CHHHHHh--cCCCceEEEeecCCCCCCccCCCCCH----HHHHHHH-HcCCeEEEEecCcCcC-CCCHHHHHHHHHhC-C
Confidence 4555553 235789999998765410 01111 1222222 2331 122222 23677888888864 4
Q ss_pred CCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc--CChHHHHHHHHcCCEEEEeccCCCHHHHHHHHH
Q 040734 239 YPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF--RNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQH 316 (361)
Q Consensus 239 ~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~ 316 (361)
+|+..- |+--. +.-+..++.+|++.+.+-...+- .-.++++.+++.|+.+.+= |++.+++++.+
T Consensus 111 ~PvLrK---------DFiid--~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvE--vh~~~El~~al- 176 (454)
T PRK09427 111 QPILCK---------DFIID--PYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTE--VSNEEELERAI- 176 (454)
T ss_pred CCEEec---------cccCC--HHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEE--ECCHHHHHHHH-
Confidence 666421 11101 11244567788888766555431 1247899999999999997 78999999887
Q ss_pred hcCccEEEeCC
Q 040734 317 LMGIDGVIVDL 327 (361)
Q Consensus 317 ~~GVdgI~TD~ 327 (361)
..|.+-|-.|.
T Consensus 177 ~~~a~iiGiNn 187 (454)
T PRK09427 177 ALGAKVIGINN 187 (454)
T ss_pred hCCCCEEEEeC
Confidence 58888776665
No 360
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=26.09 E-value=5.2e+02 Score=23.78 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=32.1
Q ss_pred hHHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCCh
Q 040734 286 PGAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 286 ~~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p 328 (361)
.+.++.+++. +..+.+=+-+++++++.++. ..|+|||+.-..
T Consensus 187 ~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~-~~GADgvVvGSa 229 (256)
T TIGR00262 187 NELVKRLKAYSAKPVLVGFGISKPEQVKQAI-DAGADGVIVGSA 229 (256)
T ss_pred HHHHHHHHhhcCCCEEEeCCCCCHHHHHHHH-HcCCCEEEECHH
Confidence 4677777765 56676654699999999886 699999998643
No 361
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=26.08 E-value=4.2e+02 Score=23.17 Aligned_cols=15 Identities=27% Similarity=0.173 Sum_probs=7.1
Q ss_pred HHHHHHhcCCcEEEc
Q 040734 263 AVKVCLEGGLQGIVS 277 (361)
Q Consensus 263 ~~~~~~~~~~~~i~~ 277 (361)
.++.+.+.|+..+++
T Consensus 21 ~~~~~~~~G~~~i~l 35 (220)
T PRK05581 21 EVKAVEAAGADWIHV 35 (220)
T ss_pred HHHHHHHcCCCEEEE
Confidence 334444555555544
No 362
>PLN02808 alpha-galactosidase
Probab=26.07 E-value=1.6e+02 Score=29.16 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=30.0
Q ss_pred hHHHHHHHHcCCEEEEeccCC------C---------HHHHHHHHHhcCccEEEeCCh
Q 040734 286 PGAVTKIKESKLSLLTYGRLN------N---------VAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn------~---------~~~~~~~~~~~GVdgI~TD~p 328 (361)
+.+.+++|++|+++..| +.. . ..+++.+ .++|||.|=-|..
T Consensus 100 ~~lad~iH~~GlkfGiy-~~~G~~tC~~~~pGs~~~e~~DA~~f-A~WGvDylK~D~C 155 (386)
T PLN02808 100 KALADYVHSKGLKLGIY-SDAGTLTCSKTMPGSLGHEEQDAKTF-ASWGIDYLKYDNC 155 (386)
T ss_pred HHHHHHHHHCCCceEEE-ecCCccccCCCCCcchHHHHHHHHHH-HHhCCCEEeecCc
Confidence 58899999999999999 421 0 2234445 4799999998864
No 363
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=25.92 E-value=4.9e+02 Score=23.42 Aligned_cols=111 Identities=16% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEcCCHH-----------HHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHH
Q 040734 200 IRVIQAILKIVFEFAENRPIIFSTFQPD-----------AAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCL 268 (361)
Q Consensus 200 ~~~v~~vl~~l~~~~~~~rv~~~Sf~~~-----------~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~ 268 (361)
......+++.+.+.|. +.+-+.++... .++++++..++.++..+...+. +.++.+.
T Consensus 18 ~e~~~~i~~~L~~~GV-~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~------------~~i~~a~ 84 (265)
T cd03174 18 TEDKLEIAEALDEAGV-DSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNRE------------KGIERAL 84 (265)
T ss_pred HHHHHHHHHHHHHcCC-CEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCch------------hhHHHHH
Q ss_pred hcCCcEEEcCCccc----------------cCChHHHHHHHHcCCEEEEec-cCCC--------HHHHHHHHHhcCccEE
Q 040734 269 EGGLQGIVSEVKGV----------------FRNPGAVTKIKESKLSLLTYG-RLNN--------VAEAVYMQHLMGIDGV 323 (361)
Q Consensus 269 ~~~~~~i~~~~~~~----------------~~~~~~v~~~~~~Gl~v~~w~-Tvn~--------~~~~~~~~~~~GVdgI 323 (361)
+.++..+.+..... -.-.+.++.+++.|+.+.+.. ++.. .+-++.+. ++|++.|
T Consensus 85 ~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~g~~~i 163 (265)
T cd03174 85 EAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALE-EAGADEI 163 (265)
T ss_pred hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHH-HcCCCEE
Q ss_pred E
Q 040734 324 I 324 (361)
Q Consensus 324 ~ 324 (361)
.
T Consensus 164 ~ 164 (265)
T cd03174 164 S 164 (265)
T ss_pred E
No 364
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=25.88 E-value=2.1e+02 Score=26.57 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEE
Q 040734 287 GAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 287 ~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
+..+.+-+.|..|..| +-+|+-..+++. +.|+..||
T Consensus 128 ~Aae~Lv~eGF~VlPY-~~~D~v~a~rLe-d~Gc~aVM 163 (267)
T CHL00162 128 KAAEFLVKKGFTVLPY-INADPMLAKHLE-DIGCATVM 163 (267)
T ss_pred HHHHHHHHCCCEEeec-CCCCHHHHHHHH-HcCCeEEe
Confidence 3344556778999999 777777777775 68888777
No 365
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.81 E-value=5e+02 Score=23.48 Aligned_cols=80 Identities=14% Similarity=0.134 Sum_probs=48.5
Q ss_pred HHHHhcCCcEEEcCCccccCChHHHHHHH----Hc--CCEEEEeccCCCHHHHHHHHHhcCccEEEe-CChHHHHHHHHH
Q 040734 265 KVCLEGGLQGIVSEVKGVFRNPGAVTKIK----ES--KLSLLTYGRLNNVAEAVYMQHLMGIDGVIV-DLVQEITEAVYD 337 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~~----~~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T-D~p~~~~~~l~~ 337 (361)
+.+.+.|+..+-+.++.- ...+.++.++ +. ++.|.+= ||-+.++.+..+ +.|.+.|+| .....+.++.++
T Consensus 34 ~al~~gGi~~iEiT~~tp-~a~~~i~~l~~~~~~~~p~~~vGaG-TVl~~e~a~~a~-~aGA~FiVsP~~~~~v~~~~~~ 110 (222)
T PRK07114 34 KACYDGGARVFEFTNRGD-FAHEVFAELVKYAAKELPGMILGVG-SIVDAATAALYI-QLGANFIVTPLFNPDIAKVCNR 110 (222)
T ss_pred HHHHHCCCCEEEEeCCCC-cHHHHHHHHHHHHHhhCCCeEEeeE-eCcCHHHHHHHH-HcCCCEEECCCCCHHHHHHHHH
Confidence 334466676655444321 1123344442 22 2667777 888888888876 689998887 556666677777
Q ss_pred hcCCcccccc
Q 040734 338 MIKPAKVVEK 347 (361)
Q Consensus 338 ~~~~~~~~~~ 347 (361)
+..+.-++..
T Consensus 111 ~~i~~iPG~~ 120 (222)
T PRK07114 111 RKVPYSPGCG 120 (222)
T ss_pred cCCCEeCCCC
Confidence 6666555543
No 366
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=25.79 E-value=5.4e+02 Score=23.84 Aligned_cols=69 Identities=23% Similarity=0.189 Sum_probs=46.4
Q ss_pred hcCCcEEEcCCccccCChHHHHHH-HHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCC---------hHHHHHHHHHh
Q 040734 269 EGGLQGIVSEVKGVFRNPGAVTKI-KESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL---------VQEITEAVYDM 338 (361)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~~~v~~~-~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~---------p~~~~~~l~~~ 338 (361)
..|+..+|+---... +.+.++.+ +..+++|.+=|.+++ ++++.++ ..|++.|+-.. |+.+.++.+++
T Consensus 49 ~~Ga~~lHvVDLg~~-n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l-~aGa~rVvIGS~av~~~~i~~~~~~~i~~~f 125 (253)
T TIGR02129 49 DDGVKGCHVIMLGPN-NDDAAKEALHAYPGGLQVGGGIND-TNAQEWL-DEGASHVIVTSWLFTKGKFDLKRLKEIVSLV 125 (253)
T ss_pred HcCCCEEEEEECCCC-cHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHH-HcCCCEEEECcHHHhCCCCCHHHHHHHHHHh
Confidence 456655543211112 55666665 556788877778986 8888887 69999998665 67778888877
Q ss_pred cC
Q 040734 339 IK 340 (361)
Q Consensus 339 ~~ 340 (361)
+.
T Consensus 126 G~ 127 (253)
T TIGR02129 126 GK 127 (253)
T ss_pred CC
Confidence 53
No 367
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=25.77 E-value=2.4e+02 Score=23.44 Aligned_cols=38 Identities=8% Similarity=-0.051 Sum_probs=21.0
Q ss_pred HHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 287 GAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 287 ~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
..++.++++|+++.+= |-+........+...|++.+++
T Consensus 35 ~~i~~Lk~~G~~i~Iv-Tn~~~~~~~~~l~~~gi~~~~~ 72 (154)
T TIGR01670 35 YGIRCALKSGIEVAII-TGRKAKLVEDRCKTLGITHLYQ 72 (154)
T ss_pred HHHHHHHHCCCEEEEE-ECCCCHHHHHHHHHcCCCEEEe
Confidence 3566666677666666 4444444444444556655443
No 368
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=25.66 E-value=5.1e+02 Score=23.55 Aligned_cols=79 Identities=11% Similarity=-0.028 Sum_probs=45.7
Q ss_pred cCCHHHHHHHHHHCCCCCE-EEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCC--EE
Q 040734 223 TFQPDAAVLIRKLQSTYPV-FFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKL--SL 299 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl--~v 299 (361)
+|.+..++.+++ +.|. ..|.-.. ..+.++...+.|++.+..++....-..+.++.+|++|+ ++
T Consensus 56 tfGp~~i~~i~~---~~~~DvHLMv~~-----------P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~ka 121 (228)
T PRK08091 56 TVGAIAIKQFPT---HCFKDVHLMVRD-----------QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLI 121 (228)
T ss_pred ccCHHHHHHhCC---CCCEEEEeccCC-----------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceE
Confidence 688999988874 3332 2222111 22333344567888888887742223488899999998 76
Q ss_pred EEeccCCC-HHHHHHHH
Q 040734 300 LTYGRLNN-VAEAVYMQ 315 (361)
Q Consensus 300 ~~w~Tvn~-~~~~~~~~ 315 (361)
.+=--..+ .+.++.++
T Consensus 122 GlalnP~Tp~~~i~~~l 138 (228)
T PRK08091 122 GLCLCPETPISLLEPYL 138 (228)
T ss_pred EEEECCCCCHHHHHHHH
Confidence 54212333 34455554
No 369
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=25.61 E-value=4.7e+02 Score=27.34 Aligned_cols=52 Identities=8% Similarity=-0.058 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEE---eCChHHHHHHHHHhcC
Q 040734 287 GAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVI---VDLVQEITEAVYDMIK 340 (361)
Q Consensus 287 ~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~---TD~p~~~~~~l~~~~~ 340 (361)
.++..+|..|++|++= .|.+.+++..+. .+|||++. -..|....++...+..
T Consensus 600 ~i~~~a~~l~~~viae-gVEt~~~~~~l~-~~g~d~~QGy~~~~P~~~~~~~~~~~~ 654 (660)
T PRK11829 600 IISCVSDVLKVRVMAE-GVETEEQRQWLL-EHGIQCGQGFLFSPPLPRAEFEAQYFS 654 (660)
T ss_pred HHHHHHHHcCCeEEEe-cCCCHHHHHHHH-HcCCCEEecCcccCCCCHHHHHHHhcc
Confidence 4455678899999999 699999998875 79998665 4557777777666543
No 370
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=25.45 E-value=5.3e+02 Score=24.31 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=47.6
Q ss_pred CCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc------cCChHHHHHHHHcCCEEEE---e--c---
Q 040734 238 TYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV------FRNPGAVTKIKESKLSLLT---Y--G--- 303 (361)
Q Consensus 238 ~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~------~~~~~~v~~~~~~Gl~v~~---w--~--- 303 (361)
.+|+++=.+-+. ++ +.+..+.+.|+..+-.+.+.+ -.|.+.++.+|..|+.|=+ - +
T Consensus 77 ~VPV~lHLDHg~---------~~-e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~ 146 (288)
T TIGR00167 77 GVPVALHLDHGA---------SE-EDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEED 146 (288)
T ss_pred CCcEEEECCCCC---------CH-HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccC
Confidence 667766544332 23 334556677888887776543 2367889999999988721 0 0
Q ss_pred -----c----CCCHHHHHHHHHhcCccEEE
Q 040734 304 -----R----LNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 304 -----T----vn~~~~~~~~~~~~GVdgI~ 324 (361)
. .-++++..++....|||.+-
T Consensus 147 ~~~~~~~~~~~T~peea~~Fv~~TgvD~LA 176 (288)
T TIGR00167 147 GVSVADESALYTDPEEAKEFVKLTGVDSLA 176 (288)
T ss_pred CcccccccccCCCHHHHHHHHhccCCcEEe
Confidence 0 12567787877556777543
No 371
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=25.43 E-value=1.3e+02 Score=27.60 Aligned_cols=49 Identities=24% Similarity=0.384 Sum_probs=35.2
Q ss_pred ChHHHHHHHHcC-CEEEEe--ccCCCHHHHHHHHHhcCccEEEe-------CChHHHHHH
Q 040734 285 NPGAVTKIKESK-LSLLTY--GRLNNVAEAVYMQHLMGIDGVIV-------DLVQEITEA 334 (361)
Q Consensus 285 ~~~~v~~~~~~G-l~v~~w--~Tvn~~~~~~~~~~~~GVdgI~T-------D~p~~~~~~ 334 (361)
.-+++...++.| ++|.-+ |.|-+|.+..-+. .+|.|||+. .+|....++
T Consensus 194 p~elv~~~~~~grLPVvnFAAGGvATPADAALMM-~LGadGVFVGSGIFKS~~P~~~A~A 252 (296)
T COG0214 194 PYELVKEVAKLGRLPVVNFAAGGVATPADAALMM-QLGADGVFVGSGIFKSSNPEKRAKA 252 (296)
T ss_pred hHHHHHHHHHhCCCCeEeecccCcCChhHHHHHH-HhCCCeEEecccccCCCCHHHHHHH
Confidence 347888889988 666544 2477899987776 599999984 556666544
No 372
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=25.24 E-value=2.9e+02 Score=24.92 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEe
Q 040734 258 NSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTY 302 (361)
Q Consensus 258 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w 302 (361)
.++.+.++.+.+.|++++-+.........++.+.+.++|+.+...
T Consensus 14 ~~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~ 58 (254)
T TIGR03234 14 LPFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLF 58 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEE
Confidence 468888999999999998775432112345666778999998654
No 373
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=25.23 E-value=3.5e+02 Score=26.71 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=24.5
Q ss_pred hHHHHHHHHcCCEEEEeccCCCHHHH-HHHHHhcCccEEEeCC
Q 040734 286 PGAVTKIKESKLSLLTYGRLNNVAEA-VYMQHLMGIDGVIVDL 327 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn~~~~~-~~~~~~~GVdgI~TD~ 327 (361)
++..+.++++|..+++- .|-+..-. .+. .+||||.++|-.
T Consensus 151 ~~I~~~~k~~g~l~iVD-aVsS~Gg~~~~v-d~wgiDv~itgS 191 (383)
T COG0075 151 KEIAKAAKEHGALLIVD-AVSSLGGEPLKV-DEWGIDVAITGS 191 (383)
T ss_pred HHHHHHHHHcCCEEEEE-ecccCCCcccch-hhcCccEEEecC
Confidence 46666777778777777 55542221 122 357888877764
No 374
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=25.21 E-value=4.1e+02 Score=27.83 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHCCCCCEEEEccCCCc-cccccccccHHHHHHHHHhcCCcEEEcCCcc--ccCChHHHHHHHHcCCEEE-
Q 040734 225 QPDAAVLIRKLQSTYPVFFLTNGGTE-IFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG--VFRNPGAVTKIKESKLSLL- 300 (361)
Q Consensus 225 ~~~~l~~l~~~~p~~~~~~l~~~~~~-~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~Gl~v~- 300 (361)
.++.++.+++..|+.++..+...... -+.+....-....++.+...|++.+.+.... .-.....++.++++|+.+.
T Consensus 57 ~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~ 136 (582)
T TIGR01108 57 PWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQG 136 (582)
T ss_pred HHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEE
Confidence 46788889888888888766542110 0111111224555677778888765543221 1112467788999999885
Q ss_pred --EeccCC---CHHHHHH---HHHhcCccEEE-eCC-----hHHHHHHHHHh
Q 040734 301 --TYGRLN---NVAEAVY---MQHLMGIDGVI-VDL-----VQEITEAVYDM 338 (361)
Q Consensus 301 --~w~Tvn---~~~~~~~---~~~~~GVdgI~-TD~-----p~~~~~~l~~~ 338 (361)
.| |.. +.+.+.+ .+.++|+|.|. .|- |..+.++++.+
T Consensus 137 ~i~~-t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~l 187 (582)
T TIGR01108 137 TISY-TTSPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSAL 187 (582)
T ss_pred EEEe-ccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHH
Confidence 35 432 2333222 22368999876 453 66666665554
No 375
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=25.13 E-value=6.7e+02 Score=24.74 Aligned_cols=95 Identities=17% Similarity=0.286 Sum_probs=63.4
Q ss_pred cCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc---c---cCChHHHHHHHH--
Q 040734 223 TFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG---V---FRNPGAVTKIKE-- 294 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~---~---~~~~~~v~~~~~-- 294 (361)
+.+++.++++++.. +.|+..--- .+.+ ....+...|+++|.+.-.. + ..+-..+..+++
T Consensus 239 ~~tW~~i~~lr~~~-~~pvivKgV-----------~~~~-dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~ 305 (383)
T cd03332 239 SLTWEDLAFLREWT-DLPIVLKGI-----------LHPD-DARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAV 305 (383)
T ss_pred CCCHHHHHHHHHhc-CCCEEEecC-----------CCHH-HHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHh
Confidence 57899999999875 466654311 1222 3345668899988765431 0 112233444432
Q ss_pred -cCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 295 -SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 295 -~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
..+.|++-|-|.+..++.+.+ .+|.|++..-+|-..
T Consensus 306 ~~~~~vi~dGGIr~G~Dv~KAL-aLGA~~v~iGr~~l~ 342 (383)
T cd03332 306 GDRLTVLFDSGVRTGADIMKAL-ALGAKAVLIGRPYAY 342 (383)
T ss_pred cCCCeEEEeCCcCcHHHHHHHH-HcCCCEEEEcHHHHH
Confidence 248999998899999999987 799999999888763
No 376
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=25.02 E-value=1.7e+02 Score=22.68 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=30.6
Q ss_pred ChHHHHHHHHcCCEEEEeccCC---CHHHHHHHHHhcCccEEEeCC----hHHHHHHHHHh
Q 040734 285 NPGAVTKIKESKLSLLTYGRLN---NVAEAVYMQHLMGIDGVIVDL----VQEITEAVYDM 338 (361)
Q Consensus 285 ~~~~v~~~~~~Gl~v~~w~Tvn---~~~~~~~~~~~~GVdgI~TD~----p~~~~~~l~~~ 338 (361)
..++++.++++|++++.. |=| ++.++.+.+..+|++ +-.|. ...+..++++.
T Consensus 19 a~e~l~~L~~~g~~~~~l-TNns~~s~~~~~~~L~~~Gi~-~~~~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFL-TNNSSRSREEYAKKLKKLGIP-VDEDEIITSGMAAAEYLKEH 77 (101)
T ss_dssp HHHHHHHHHHTTSEEEEE-ES-SSS-HHHHHHHHHHTTTT---GGGEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEE-eCCCCCCHHHHHHHHHhcCcC-CCcCEEEChHHHHHHHHHhc
Confidence 358899999999999888 533 334544444578876 22222 23344556553
No 377
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=24.97 E-value=46 Score=26.61 Aligned_cols=38 Identities=8% Similarity=0.001 Sum_probs=31.3
Q ss_pred cccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCC
Q 040734 70 IKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDD 107 (361)
Q Consensus 70 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~ 107 (361)
-.+.+.+|++.|+...+-.-|+.|-++.||+..+..+.
T Consensus 12 g~~~~~e~l~~al~~aa~~~eV~vff~~DGV~~l~~~q 49 (116)
T TIGR03010 12 GTASGREGLDALLAASAFDEDIGVFFIDDGVLQLLKNQ 49 (116)
T ss_pred CcchHHHHHHHHHHHHhccCCeEEEEechHHHHHhccC
Confidence 46788899999988766667999999999998877653
No 378
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=24.89 E-value=15 Score=23.01 Aligned_cols=16 Identities=31% Similarity=0.119 Sum_probs=11.2
Q ss_pred CCCCCCCCCCccccccc
Q 040734 13 SLDQVPESPSLTRFSTS 29 (361)
Q Consensus 13 ~~~~~~~~~~~~~~~~~ 29 (361)
|+-|++||.+| ||-+|
T Consensus 1 st~q~~eNidL-f~~~R 16 (35)
T PF12579_consen 1 STFQLQENIDL-FCQTR 16 (35)
T ss_pred CCcchhhhHHH-HHHHH
Confidence 45677888887 77654
No 379
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=24.84 E-value=1.3e+02 Score=28.44 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=29.6
Q ss_pred cCCcccCHHHHHHhCC--CC-ceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEE----EEcCCHHHHHHHHH
Q 040734 162 IDDSLCTLQEAFQQVD--PN-VGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPII----FSTFQPDAAVLIRK 234 (361)
Q Consensus 162 ~~~~iptL~EvL~~~~--~~-~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~----~~Sf~~~~l~~l~~ 234 (361)
.-.++-.|+|.++..- ++ ++|.|=-..+- +.+.|++++.++.-.--|+ +||.+...++.+++
T Consensus 95 TyApvevLre~ye~aL~~~~VVGLsIgTRPDC-----------lpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNR 163 (312)
T COG1242 95 TYAPVEVLREMYEQALSEAGVVGLSIGTRPDC-----------LPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINR 163 (312)
T ss_pred ccCcHHHHHHHHHHHhCcCCeeEEeecCCCCC-----------CcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhc
Confidence 3355667777777643 22 34554444321 2344555555553221222 24555555555543
No 380
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=24.74 E-value=5.3e+02 Score=24.82 Aligned_cols=105 Identities=11% Similarity=0.127 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc--ccCChHHHHHHHHcCCEEEEe
Q 040734 225 QPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG--VFRNPGAVTKIKESKLSLLTY 302 (361)
Q Consensus 225 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~Gl~v~~w 302 (361)
+.+.++.+.+..++..+..+...+. ... +-++.+...+++.+.+.... .......++.++++|+.|.+.
T Consensus 63 ~~e~i~~~~~~~~~~~~~~ll~pg~--------~~~-~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 63 DLEYIEAAADVVKRAKVAVLLLPGI--------GTV-HDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred hHHHHHHHHHhCCCCEEEEEeccCc--------cCH-HHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 3455555655555554443322211 012 23455666777765533221 112457888999999988654
Q ss_pred c---cCCCHHHHHH---HHHhcCccEEE-eCC-----hHHHHHHHHHh
Q 040734 303 G---RLNNVAEAVY---MQHLMGIDGVI-VDL-----VQEITEAVYDM 338 (361)
Q Consensus 303 ~---Tvn~~~~~~~---~~~~~GVdgI~-TD~-----p~~~~~~l~~~ 338 (361)
. +..+++.+.+ .+.++|+|.|. +|- |..+.+.+...
T Consensus 134 l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 134 LMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRAL 181 (333)
T ss_pred EEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHH
Confidence 1 1223443332 22357988765 554 66666665544
No 381
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=24.73 E-value=3.5e+02 Score=25.88 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCcEEEcCCccc----c-------C---ChHHHHHHHHc--CCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 262 EAVKVCLEGGLQGIVSEVKGV----F-------R---NPGAVTKIKES--KLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~----~-------~---~~~~v~~~~~~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
+..+.+...|+..+.++.... + . .-+.|..+++. .+.|+.-|-|.+.+++.+++ .|+||||.
T Consensus 145 ~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l--~g~dgVMi 222 (318)
T TIGR00742 145 DFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHL--SHVDGVMV 222 (318)
T ss_pred HHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHH--hCCCEEEE
Confidence 344555677887776665531 0 0 12456666653 68998888899999998886 39999998
Q ss_pred CChHHH
Q 040734 326 DLVQEI 331 (361)
Q Consensus 326 D~p~~~ 331 (361)
-+....
T Consensus 223 gRgal~ 228 (318)
T TIGR00742 223 GREAYE 228 (318)
T ss_pred CHHHHh
Confidence 664433
No 382
>PLN02692 alpha-galactosidase
Probab=24.66 E-value=1.4e+02 Score=29.70 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=30.0
Q ss_pred hHHHHHHHHcCCEEEEecc-----CC--C-------HHHHHHHHHhcCccEEEeCCh
Q 040734 286 PGAVTKIKESKLSLLTYGR-----LN--N-------VAEAVYMQHLMGIDGVIVDLV 328 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~T-----vn--~-------~~~~~~~~~~~GVdgI~TD~p 328 (361)
+.+++++|++|+++..|.. .. - ..+++.+ .++|||.|=.|..
T Consensus 124 k~ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~g~e~~DA~~f-A~WGvDylK~D~C 179 (412)
T PLN02692 124 KALADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGHEEQDAKTF-ASWGIDYLKYDNC 179 (412)
T ss_pred HHHHHHHHHCCCceEEEecCCccccCCCCCCchHHHHHHHHHH-HhcCCCEEecccc
Confidence 5889999999999999931 11 0 2234444 4799999988875
No 383
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=24.22 E-value=3.5e+02 Score=21.85 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=36.4
Q ss_pred ChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcC----ccEEEeCC--------hHHHHHHHHHhcC
Q 040734 285 NPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMG----IDGVIVDL--------VQEITEAVYDMIK 340 (361)
Q Consensus 285 ~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~G----VdgI~TD~--------p~~~~~~l~~~~~ 340 (361)
..++++.++++|+++++- |-++...+...+..+| ++.|++-. |..+..++++...
T Consensus 82 ~~~~L~~l~~~~~~~~i~-Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~ 148 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIV-SNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGI 148 (176)
T ss_dssp HHHHHHHHHHTTSEEEEE-ESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTS
T ss_pred hhhhhhhcccccceeEEe-ecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCC
Confidence 357888888899999988 6666665555555566 44665422 4566777777643
No 384
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=24.20 E-value=5.5e+02 Score=23.35 Aligned_cols=77 Identities=9% Similarity=0.082 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCcEEEcCCc------cccCChHHHHHHHHc-C--CEEEEeccCCCHHHHHHHHHhcCccEEEe-----
Q 040734 260 LEEAVKVCLEGGLQGIVSEVK------GVFRNPGAVTKIKES-K--LSLLTYGRLNNVAEAVYMQHLMGIDGVIV----- 325 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~------~~~~~~~~v~~~~~~-G--l~v~~w~Tvn~~~~~~~~~~~~GVdgI~T----- 325 (361)
+.+-++.... +++.+|++.- .+...+..++.+++. . +.|+.- |.+++.+...+...|+|.|+.
T Consensus 17 l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLM--v~~P~~~i~~~~~aGad~it~H~Ea~ 93 (229)
T PRK09722 17 FKEQIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDVHLM--VTDPQDYIDQLADAGADFITLHPETI 93 (229)
T ss_pred HHHHHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCeEEEEE--ecCHHHHHHHHHHcCCCEEEECccCC
Confidence 3334444444 6667665531 112356788888764 2 444444 556666544334688887762
Q ss_pred -CChHHHHHHHHHhc
Q 040734 326 -DLVQEITEAVYDMI 339 (361)
Q Consensus 326 -D~p~~~~~~l~~~~ 339 (361)
++|..+.+.+++.+
T Consensus 94 ~~~~~~~i~~Ik~~G 108 (229)
T PRK09722 94 NGQAFRLIDEIRRAG 108 (229)
T ss_pred cchHHHHHHHHHHcC
Confidence 34555666666554
No 385
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=24.11 E-value=2.3e+02 Score=24.41 Aligned_cols=14 Identities=7% Similarity=0.100 Sum_probs=6.0
Q ss_pred HHHHHHcCCEEEEe
Q 040734 289 VTKIKESKLSLLTY 302 (361)
Q Consensus 289 v~~~~~~Gl~v~~w 302 (361)
++.++++|+.+.+-
T Consensus 57 i~~L~~~Gi~v~I~ 70 (183)
T PRK09484 57 IRCLLTSGIEVAII 70 (183)
T ss_pred HHHHHHCCCEEEEE
Confidence 34444444444443
No 386
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.11 E-value=2.7e+02 Score=26.36 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=43.1
Q ss_pred HHHHHHHHc--CCEEEEeccCCCHHHHHHHHHhcCccEEEeCC--hHHHHHHHHHh--cCCcccccccCccc
Q 040734 287 GAVTKIKES--KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL--VQEITEAVYDM--IKPAKVVEKEDNKS 352 (361)
Q Consensus 287 ~~v~~~~~~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~--p~~~~~~l~~~--~~~~~~~~~~~~~~ 352 (361)
+.++++++. ..++.+= +++.++..+++ ..|+|.|+-|. |+.+.+++... ..+....+.+++.-
T Consensus 188 ~ai~~~r~~~~~~kIeVE--v~tl~ea~eal-~~gaDiI~LDnm~~e~vk~av~~~~~~~~~v~ieaSGGI~ 256 (289)
T PRK07896 188 AALRAVRAAAPDLPCEVE--VDSLEQLDEVL-AEGAELVLLDNFPVWQTQEAVQRRDARAPTVLLESSGGLT 256 (289)
T ss_pred HHHHHHHHhCCCCCEEEE--cCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHhccCCCEEEEEECCCC
Confidence 566677664 2445554 68888888887 69999999997 77777777643 24555566666554
No 387
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=24.08 E-value=3.9e+02 Score=24.74 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=19.9
Q ss_pred HHHHHHHHc-CCEEEE----eccCCCHHHHHHHHHhcCccEEEe
Q 040734 287 GAVTKIKES-KLSLLT----YGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 287 ~~v~~~~~~-Gl~v~~----w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
++++.+++. ++.|.+ ..+.++..++.+.+.+.|+|+|.+
T Consensus 152 eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 152 NLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred HHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 456666665 444433 102212333334444688998885
No 388
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=23.96 E-value=5.9e+02 Score=23.64 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=22.4
Q ss_pred HHHHHHHHc-CCEEEEec--cCCCHHHHHHHHHhcCccEEE
Q 040734 287 GAVTKIKES-KLSLLTYG--RLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 287 ~~v~~~~~~-Gl~v~~w~--Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
++++.+++. ++.|.+=- ...+..++.+.+.+.|+|+|.
T Consensus 144 eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~ 184 (296)
T cd04740 144 EIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLT 184 (296)
T ss_pred HHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEE
Confidence 567777777 67766510 223344444444468999875
No 389
>PLN02979 glycolate oxidase
Probab=23.94 E-value=7e+02 Score=24.50 Aligned_cols=96 Identities=13% Similarity=0.272 Sum_probs=63.7
Q ss_pred EcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc------cCChHHHHHHHH-
Q 040734 222 STFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV------FRNPGAVTKIKE- 294 (361)
Q Consensus 222 ~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~------~~~~~~v~~~~~- 294 (361)
.+.+++.++++|+.. +.|+..= +- .+. +....+.+.|+++|.+.-..- ..+-..+..+++
T Consensus 208 ~~ltW~dl~wlr~~~-~~PvivK--gV---------~~~-~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~ 274 (366)
T PLN02979 208 RTLSWKDVQWLQTIT-KLPILVK--GV---------LTG-EDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKA 274 (366)
T ss_pred CCCCHHHHHHHHhcc-CCCEEee--cC---------CCH-HHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHH
Confidence 357889999999865 4665431 10 112 334566788999877654321 012234444433
Q ss_pred --cCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 295 --SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 295 --~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
..+.|++-|-+.+..++.+.+ .+|.|++..-+|-..
T Consensus 275 ~~~~~~Vi~dGGIr~G~Di~KAL-ALGAdaV~iGrp~L~ 312 (366)
T PLN02979 275 TQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVF 312 (366)
T ss_pred hCCCCeEEEeCCcCcHHHHHHHH-HcCCCEEEEcHHHHH
Confidence 238889988899999999987 699999999998774
No 390
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=23.88 E-value=4.7e+02 Score=22.49 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=46.5
Q ss_pred HHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHH----HcC--CEE
Q 040734 226 PDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIK----ESK--LSL 299 (361)
Q Consensus 226 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~----~~G--l~v 299 (361)
.++++.+++..|..+...+ +. .+++++.+.+ ..+++.+.++.- +++.++++. ..+ ..+
T Consensus 67 ~~av~~~~~~~~~~~~I~V-Ev----------~~~ee~~ea~-~~g~d~I~lD~~----~~~~~~~~v~~l~~~~~~v~i 130 (169)
T PF01729_consen 67 EEAVKAARQAAPEKKKIEV-EV----------ENLEEAEEAL-EAGADIIMLDNM----SPEDLKEAVEELRELNPRVKI 130 (169)
T ss_dssp HHHHHHHHHHSTTTSEEEE-EE----------SSHHHHHHHH-HTT-SEEEEES-----CHHHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHhCCCCceEEE-Ec----------CCHHHHHHHH-HhCCCEEEecCc----CHHHHHHHHHHHhhcCCcEEE
Confidence 5677888888888764222 11 2355555543 578888877643 454444433 333 566
Q ss_pred EEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 300 LTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 300 ~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
-+=|.+|-.. +..+. ..|||.|-+-
T Consensus 131 e~SGGI~~~n-i~~ya-~~gvD~isvg 155 (169)
T PF01729_consen 131 EASGGITLEN-IAEYA-KTGVDVISVG 155 (169)
T ss_dssp EEESSSSTTT-HHHHH-HTT-SEEEEC
T ss_pred EEECCCCHHH-HHHHH-hcCCCEEEcC
Confidence 6655555433 33444 5899998764
No 391
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=23.84 E-value=70 Score=23.37 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=18.0
Q ss_pred eeeecCCcEEEEcCCCcccccCC
Q 040734 93 VQVTKDGWPVIFHDDVIVSEDNG 115 (361)
Q Consensus 93 V~lTkDg~~Vv~HD~~l~r~t~g 115 (361)
|.-|+||+-|.+|...+-|+.+.
T Consensus 43 ~meTkDG~kI~m~gdEV~RL~~~ 65 (73)
T PF11525_consen 43 VMETKDGQKITMHGDEVARLDSL 65 (73)
T ss_dssp EEEBTTS-EEEEETTEEEEECCC
T ss_pred EEEccCCCEEEecchHHHhHHHH
Confidence 56699999999999888887553
No 392
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=23.80 E-value=68 Score=28.52 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=27.3
Q ss_pred HHHHhCCCCEEEEeeeeecCCcEEEEcCCCc
Q 040734 79 NSSAKYPLDFIEFDVQVTKDGWPVIFHDDVI 109 (361)
Q Consensus 79 ~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 109 (361)
+-|...|+--+|.-||+-||.+.|--||..+
T Consensus 271 qiaqsfgavnletrvwmpkdevavynhdeyv 301 (347)
T PF06673_consen 271 QIAQSFGAVNLETRVWMPKDEVAVYNHDEYV 301 (347)
T ss_pred HHHHhcCccceeeeeeccccceeeecccceE
Confidence 3466789999999999999999999999865
No 393
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.78 E-value=5.9e+02 Score=23.60 Aligned_cols=115 Identities=16% Similarity=0.088 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHCCCCCEEEEccCCCcc-ccccccccHHHHHHHHHhcCCcEEEcCCcc--ccCChHHHHHHHHcCCEEE
Q 040734 224 FQPDAAVLIRKLQSTYPVFFLTNGGTEI-FYDVRRNSLEEAVKVCLEGGLQGIVSEVKG--VFRNPGAVTKIKESKLSLL 300 (361)
Q Consensus 224 f~~~~l~~l~~~~p~~~~~~l~~~~~~~-~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~Gl~v~ 300 (361)
-+.+.++.+++..|+.++..+......+ +......-..+.++.+.+.++..+.+.... +-.-...++.++++|+.|.
T Consensus 56 ~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~ 135 (275)
T cd07937 56 DPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVE 135 (275)
T ss_pred CHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEE
Confidence 3466777777777776665544321100 000111113445566677777776554322 1113467889999998875
Q ss_pred E-----eccCCCHHHHHHH---HHhcCccEEE-eCC-----hHHHHHHHHHh
Q 040734 301 T-----YGRLNNVAEAVYM---QHLMGIDGVI-VDL-----VQEITEAVYDM 338 (361)
Q Consensus 301 ~-----w~Tvn~~~~~~~~---~~~~GVdgI~-TD~-----p~~~~~~l~~~ 338 (361)
. +++..+++.+.++ +.++|+|.|. .|- |..+.+.+...
T Consensus 136 ~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l 187 (275)
T cd07937 136 GAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKAL 187 (275)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 3 2122333333322 2358988775 343 66666665543
No 394
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=23.57 E-value=6.6e+02 Score=24.05 Aligned_cols=124 Identities=12% Similarity=0.115 Sum_probs=70.2
Q ss_pred ccCHHHHHHhCC--CCceEEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCH----HHHHHHHHHCCCC
Q 040734 166 LCTLQEAFQQVD--PNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQP----DAAVLIRKLQSTY 239 (361)
Q Consensus 166 iptL~EvL~~~~--~~~~l~iEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~rv~~~Sf~~----~~l~~l~~~~p~~ 239 (361)
.-.++.+++++. .++.+.||-=.+ ....+-++.+++.+..+|.++-|-+. +.+..+++.....
T Consensus 81 ~eam~k~I~~v~~~~d~Pl~IDSt~p-----------~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~eel~llk~yg~aa 149 (308)
T PRK00979 81 PEAMEKYIDFVSEITDLPFLIDSTSP-----------EARIAAAKYATELGLADRAIYNSINPSIEEEEIEALKESDIKA 149 (308)
T ss_pred HHHHHHHHHHHHhcCCCCEEEeCCCH-----------HHHHHHHHHhhhcCCCCceEEEeccCCCCHHHHHHHHHhCCce
Confidence 334555666655 357788874432 34455566666667788999988764 4677777776555
Q ss_pred CEEEEccCCCccccccccccHHH--------HHHHHHhcCCcEEEcCCcccc-----CChHHHHHHHHc-CCEEEE
Q 040734 240 PVFFLTNGGTEIFYDVRRNSLEE--------AVKVCLEGGLQGIVSEVKGVF-----RNPGAVTKIKES-KLSLLT 301 (361)
Q Consensus 240 ~~~~l~~~~~~~~~d~~~~~l~~--------~~~~~~~~~~~~i~~~~~~~~-----~~~~~v~~~~~~-Gl~v~~ 301 (361)
-+++.++... +...-|-.-+++ .++.+.+.|+.-+.++.-.+. .+-+.++.+++. |+++..
T Consensus 150 vIvLa~d~~~-pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpvs~~~~tl~aI~~iK~~~G~pt~~ 224 (308)
T PRK00979 150 AIVLAFDPMD-PSVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPLPGSGAAIRAIFAVKAKFGYPVGC 224 (308)
T ss_pred EEEEEcCCCC-CCHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcCccHHHHHHHHHHHHHHcCCCeEE
Confidence 5666665532 111111112333 456677888765544432221 123667777764 777654
No 395
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=23.50 E-value=3.8e+02 Score=23.94 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=43.0
Q ss_pred HHHHHhcCCcEE--EcCCcccc------CChHHHHHHHHcCCEEEEeccCC---------CHHHHHH---HHHhcCccEE
Q 040734 264 VKVCLEGGLQGI--VSEVKGVF------RNPGAVTKIKESKLSLLTYGRLN---------NVAEAVY---MQHLMGIDGV 323 (361)
Q Consensus 264 ~~~~~~~~~~~i--~~~~~~~~------~~~~~v~~~~~~Gl~v~~w~Tvn---------~~~~~~~---~~~~~GVdgI 323 (361)
++.+...|++++ .++..... .-.++++.+++.|++++++ ..- +.+++.+ ...+.|+|.|
T Consensus 82 v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie-~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~I 160 (235)
T cd00958 82 VEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAW-MYPRGPAVKNEKDPDLIAYAARIGAELGADIV 160 (235)
T ss_pred HHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEE-EeccCCcccCccCHHHHHHHHHHHHHHCCCEE
Confidence 445667888776 43332211 1235666678899999987 422 2344444 1235899999
Q ss_pred EeCChH---HHHHHHHH
Q 040734 324 IVDLVQ---EITEAVYD 337 (361)
Q Consensus 324 ~TD~p~---~~~~~l~~ 337 (361)
-+.++. .+.++.+.
T Consensus 161 k~~~~~~~~~~~~i~~~ 177 (235)
T cd00958 161 KTKYTGDAESFKEVVEG 177 (235)
T ss_pred EecCCCCHHHHHHHHhc
Confidence 998754 44444443
No 396
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=23.49 E-value=3.8e+02 Score=22.93 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=18.4
Q ss_pred hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCc
Q 040734 286 PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGI 320 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GV 320 (361)
.++++.++++|+++++- |-.+...+...+...|+
T Consensus 98 ~~~L~~L~~~g~~~~i~-Sn~~~~~~~~~l~~~gl 131 (198)
T TIGR01428 98 PAGLRALKERGYRLAIL-SNGSPAMLKSLVKHAGL 131 (198)
T ss_pred HHHHHHHHHCCCeEEEE-eCCCHHHHHHHHHHCCC
Confidence 46666777777776666 43333334443334553
No 397
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=23.41 E-value=3.9e+02 Score=28.02 Aligned_cols=113 Identities=17% Similarity=0.126 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHCCCCCEEEEccCCCc-cccccccccHHHHHHHHHhcCCcEEEcCCcc--ccCChHHHHHHHHcCCEEE-
Q 040734 225 QPDAAVLIRKLQSTYPVFFLTNGGTE-IFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG--VFRNPGAVTKIKESKLSLL- 300 (361)
Q Consensus 225 ~~~~l~~l~~~~p~~~~~~l~~~~~~-~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~Gl~v~- 300 (361)
.++.++.+++..|+.++..+...... -+......-....++.+.+.|++.+.+-... .......++.++++|+.+.
T Consensus 62 p~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~ 141 (592)
T PRK09282 62 PWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQG 141 (592)
T ss_pred HHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEE
Confidence 46778888888888887766543211 0111112234556677778888766543221 1112466788999999884
Q ss_pred --EeccCC---CHHHHHH---HHHhcCccEEE-eCC-----hHHHHHHHHHh
Q 040734 301 --TYGRLN---NVAEAVY---MQHLMGIDGVI-VDL-----VQEITEAVYDM 338 (361)
Q Consensus 301 --~w~Tvn---~~~~~~~---~~~~~GVdgI~-TD~-----p~~~~~~l~~~ 338 (361)
+| |.. +.+.+.+ .+.++|+|.|. .|- |..+.+.+...
T Consensus 142 ~i~~-t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~l 192 (592)
T PRK09282 142 TISY-TTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKAL 192 (592)
T ss_pred EEEe-ccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHH
Confidence 34 332 2333222 12368999876 454 66666665543
No 398
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=23.12 E-value=2.3e+02 Score=28.55 Aligned_cols=56 Identities=5% Similarity=0.099 Sum_probs=38.7
Q ss_pred HHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 265 KVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
+.+.+.+++|+|+....+ ....++.+...|+.+.+= +++.+++.+.. ..|+|.|.-
T Consensus 271 dlAl~~gAdGVHLGQeDL--~~~~aR~ilg~~~iIGvS--tHs~eEl~~A~-~~gaDYI~l 326 (437)
T PRK12290 271 QLAIKHQAYGVHLGQEDL--EEANLAQLTDAGIRLGLS--THGYYELLRIV-QIQPSYIAL 326 (437)
T ss_pred HHHHHcCCCEEEcChHHc--chhhhhhhcCCCCEEEEe--cCCHHHHHHHh-hcCCCEEEE
Confidence 567788999999876543 344455555556655544 68888887775 689998854
No 399
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=23.11 E-value=3.5e+02 Score=24.88 Aligned_cols=63 Identities=16% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHhcCCcEEEcCCccc-----cCChHHHHHH-HHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 263 AVKVCLEGGLQGIVSEVKGV-----FRNPGAVTKI-KESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~-----~~~~~~v~~~-~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
..+.....|+..+.+...-. +.++..++.+ .+..+.|++--.+..+.+..+.+ ++|+|+|..|
T Consensus 143 ~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aM-ElG~DaVL~N 211 (262)
T COG2022 143 LARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAM-ELGADAVLLN 211 (262)
T ss_pred HHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHH-hcccceeehh
No 400
>PLN02428 lipoic acid synthase
Probab=23.01 E-value=7.1e+02 Score=24.25 Aligned_cols=13 Identities=31% Similarity=0.268 Sum_probs=6.8
Q ss_pred HHHHHHHHc--CCEE
Q 040734 287 GAVTKIKES--KLSL 299 (361)
Q Consensus 287 ~~v~~~~~~--Gl~v 299 (361)
+.++.+++. |+.+
T Consensus 235 e~L~~ak~~~pGi~t 249 (349)
T PLN02428 235 DVLKHAKESKPGLLT 249 (349)
T ss_pred HHHHHHHHhCCCCeE
Confidence 445555555 5554
No 401
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=23.00 E-value=7.4e+02 Score=24.45 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=61.7
Q ss_pred cCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcc---c---cCChHHHHHHHH--
Q 040734 223 TFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG---V---FRNPGAVTKIKE-- 294 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~---~---~~~~~~v~~~~~-- 294 (361)
+.+++.++.+++..+ .|+..--- .+. +....+.+.|+++|.+.... + ..+-..+..+.+
T Consensus 231 ~ltW~di~~lr~~~~-~pvivKgV-----------~s~-~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~ 297 (381)
T PRK11197 231 SISWKDLEWIRDFWD-GPMVIKGI-----------LDP-EDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAV 297 (381)
T ss_pred CCCHHHHHHHHHhCC-CCEEEEec-----------CCH-HHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHh
Confidence 578899999998753 45533211 122 23455668899988644321 1 112233333322
Q ss_pred -cCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 295 -SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 295 -~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
.++.|++-|-+.+..++.+.+ .+|.++|+.-+|-..
T Consensus 298 ~~~~~vi~dGGIr~g~Di~KAL-aLGA~~V~iGr~~l~ 334 (381)
T PRK11197 298 KGDITILADSGIRNGLDVVRMI-ALGADTVLLGRAFVY 334 (381)
T ss_pred cCCCeEEeeCCcCcHHHHHHHH-HcCcCceeEhHHHHH
Confidence 358999998899999999987 799999998877554
No 402
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=22.94 E-value=2.6e+02 Score=26.53 Aligned_cols=62 Identities=21% Similarity=0.174 Sum_probs=41.5
Q ss_pred HHHHHHHHcC--CEEEEeccCCCHHHHHHHHHhcCccEEEeCC--hHHHHHHHHHhcCCcccccccCccc
Q 040734 287 GAVTKIKESK--LSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL--VQEITEAVYDMIKPAKVVEKEDNKS 352 (361)
Q Consensus 287 ~~v~~~~~~G--l~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~--p~~~~~~l~~~~~~~~~~~~~~~~~ 352 (361)
+.++++++.- .++.+= +++.++..+++ ..|+|.|+-|. |+.+.++++.. +.....+.+|+..
T Consensus 197 ~av~~~r~~~~~~kIeVE--v~sleea~ea~-~~gaDiI~LDn~s~e~~~~av~~~-~~~~~ieaSGGI~ 262 (296)
T PRK09016 197 QAVEKAFWLHPDVPVEVE--VENLDELDQAL-KAGADIIMLDNFTTEQMREAVKRT-NGRALLEVSGNVT 262 (296)
T ss_pred HHHHHHHHhCCCCCEEEE--eCCHHHHHHHH-HcCCCEEEeCCCChHHHHHHHHhh-cCCeEEEEECCCC
Confidence 5566666543 555555 77889998887 69999999997 66677777643 3334455555543
No 403
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=22.89 E-value=7.3e+02 Score=24.37 Aligned_cols=92 Identities=11% Similarity=0.168 Sum_probs=57.7
Q ss_pred HHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEE--EEe-cc
Q 040734 228 AAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSL--LTY-GR 304 (361)
Q Consensus 228 ~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v--~~w-~T 304 (361)
.++.+++..|.+...|..... +....++.....|+. +- ..+..-++.+++.|..- ++| +.
T Consensus 26 ~~~~l~~~lp~~~~~YAvKaN----------~~~~il~~l~~~G~g-~D------vaS~gEl~~al~~G~~~~~Iif~gp 88 (394)
T cd06831 26 KHSQWQTVMAQIKPFYTVRCN----------STPAVLEILAALGTG-FA------CSSKNEMALVQELGVSPENIIYTNP 88 (394)
T ss_pred HHHHHHHHCCCCeEEeeeccC----------CCHHHHHHHHHcCCC-eE------eCCHHHHHHHHhcCCCcCCEEEeCC
Confidence 344566667766655554432 234455666666642 21 12556677777777443 334 24
Q ss_pred CCCHHHHHHHHHhcCccEEEeCChHHHHHHHHH
Q 040734 305 LNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYD 337 (361)
Q Consensus 305 vn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~~ 337 (361)
+.+.++++.++ ..||..|..|....+.++.+.
T Consensus 89 ~K~~~~l~~a~-~~Gv~~i~vDS~~El~~i~~~ 120 (394)
T cd06831 89 CKQASQIKYAA-KVGVNIMTCDNEIELKKIARN 120 (394)
T ss_pred CCCHHHHHHHH-HCCCCEEEECCHHHHHHHHHh
Confidence 66788888876 589988899999999887653
No 404
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.87 E-value=5.9e+02 Score=23.24 Aligned_cols=68 Identities=22% Similarity=0.236 Sum_probs=45.9
Q ss_pred cHHHHHHHHHhcCCcEEEcC-Cccc----cCChHHHHHHHH-cCCEEEEeccCCCHHHHHHHHHhc-----C-ccEEEeC
Q 040734 259 SLEEAVKVCLEGGLQGIVSE-VKGV----FRNPGAVTKIKE-SKLSLLTYGRLNNVAEAVYMQHLM-----G-IDGVIVD 326 (361)
Q Consensus 259 ~l~~~~~~~~~~~~~~i~~~-~~~~----~~~~~~v~~~~~-~Gl~v~~w~Tvn~~~~~~~~~~~~-----G-VdgI~TD 326 (361)
++.+.++.+...++..+.+. .... =.+-++++.+.+ .+++|++=|.+.+.+++.++. .+ | |+|++.-
T Consensus 145 ~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~-~~~~~~~g~v~gvivg 223 (241)
T PRK14114 145 DPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQ-RVHRETNGLLKGVIVG 223 (241)
T ss_pred CHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH-hcccccCCcEEEEEEe
Confidence 45666677777887655432 2110 024467776654 578999888999999998886 45 6 9999874
Q ss_pred C
Q 040734 327 L 327 (361)
Q Consensus 327 ~ 327 (361)
.
T Consensus 224 ~ 224 (241)
T PRK14114 224 R 224 (241)
T ss_pred h
Confidence 4
No 405
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=22.87 E-value=2e+02 Score=24.82 Aligned_cols=33 Identities=3% Similarity=0.040 Sum_probs=25.4
Q ss_pred CcEEEcCCccccCChHHHHHHHHcCCEEEEeccCCC
Q 040734 272 LQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNN 307 (361)
Q Consensus 272 ~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~Tvn~ 307 (361)
..++.+++.. .++..++.+++.|+.+..| +++.
T Consensus 98 ~~~fr~P~G~--~~~~~~~~l~~~G~~~v~w-~~~~ 130 (191)
T TIGR02764 98 PTLFRPPSGA--FNKAVLKAAESLGYTVVHW-SVDS 130 (191)
T ss_pred CCEEECCCcC--CCHHHHHHHHHcCCeEEEe-cCCC
Confidence 3455555554 3889999999999999999 8764
No 406
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=22.85 E-value=6.5e+02 Score=23.77 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHH
Q 040734 225 QPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKE 294 (361)
Q Consensus 225 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~ 294 (361)
+.+.++.+++..+ +|+... ++ + .+.+++.++.+..+++++.+.-. ++.+|.+++.+++
T Consensus 180 ~~~~i~~i~~~~~-ipvi~n--Gg------I--~~~~da~~~l~~~gad~VmigR~-~l~~P~l~~~~~~ 237 (319)
T TIGR00737 180 NWDIIARVKQAVR-IPVIGN--GD------I--FSPEDAKAMLETTGCDGVMIGRG-ALGNPWLFRQIEQ 237 (319)
T ss_pred hHHHHHHHHHcCC-CcEEEe--CC------C--CCHHHHHHHHHhhCCCEEEEChh-hhhCChHHHHHHH
Confidence 5666777776543 665432 21 1 24566667776678888876543 3468888877754
No 407
>cd08586 PI-PLCc_BcPLC_like Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins. This subfamily corresponds to the catalytic domain present in Bacillus cereus phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and its sequence homologs found in bacteria and eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Their catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This family also includes some uncharacterized eukaryotic homologs, which
Probab=22.84 E-value=1e+02 Score=28.96 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=31.1
Q ss_pred ccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCC
Q 040734 71 KENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDV 108 (361)
Q Consensus 71 pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~ 108 (361)
..+--.++..-++.|+.+++++|+...++.+.++|...
T Consensus 32 ~~~Q~~~i~~QL~~GiR~lDiR~~~~~~~~l~~~Hg~~ 69 (279)
T cd08586 32 VQCQDWSIAEQLNAGIRFLDIRLRLIDNNDLAIHHGPF 69 (279)
T ss_pred eecCCCCHHHHHhcCCeEEEEEeeecCCCeEEEEccCc
Confidence 34445677788889999999999998779999999654
No 408
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=22.71 E-value=6.1e+02 Score=23.42 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=60.8
Q ss_pred cCCCCEEEEc--------CCHHHHHHHHHHCCCCCEEEEccCCCc--cccccccccHHHHHHHHHhcCCcEEEcCCcc--
Q 040734 214 AENRPIIFST--------FQPDAAVLIRKLQSTYPVFFLTNGGTE--IFYDVRRNSLEEAVKVCLEGGLQGIVSEVKG-- 281 (361)
Q Consensus 214 ~~~~rv~~~S--------f~~~~l~~l~~~~p~~~~~~l~~~~~~--~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~-- 281 (361)
+..+|+-+++ .+...++.+++.. ++|+..+...... .|.+..-....+.+..+++.|+++++.-.-.
T Consensus 20 ~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~-~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~d 98 (248)
T PRK11572 20 AGADRIELCAAPKEGGLTPSLGVLKSVRERV-TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVD 98 (248)
T ss_pred cCCCEEEEccCcCCCCcCCCHHHHHHHHHhc-CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCC
Confidence 4467777753 3667788877753 6888776654321 1211111223455677889999988754311
Q ss_pred ccCCh----HHHHHHHHcCCEEEE---eccCCCHHH-HHHHHHhcCccEEEeC
Q 040734 282 VFRNP----GAVTKIKESKLSLLT---YGRLNNVAE-AVYMQHLMGIDGVIVD 326 (361)
Q Consensus 282 ~~~~~----~~v~~~~~~Gl~v~~---w~Tvn~~~~-~~~~~~~~GVdgI~TD 326 (361)
-.++. .+++.++ |+++.. +..+.++.+ +++++ .+|++.|.|-
T Consensus 99 g~vD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~al~~l~-~lG~~rILTS 148 (248)
T PRK11572 99 GHVDMPRMRKIMAAAG--PLAVTFHRAFDMCANPLNALKQLA-DLGVARILTS 148 (248)
T ss_pred CCcCHHHHHHHHHHhc--CCceEEechhhccCCHHHHHHHHH-HcCCCEEECC
Confidence 01233 4444443 455432 212334444 55665 6999999984
No 409
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=22.62 E-value=1.2e+02 Score=29.13 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=37.2
Q ss_pred CCcceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecC
Q 040734 44 IPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKD 98 (361)
Q Consensus 44 ~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkD 98 (361)
..+|+|||-=|+..+ .--|--.+..+.|.+.|||.|-+--+.|.|
T Consensus 12 ~~~~~iIAEig~NHn----------G~le~A~~lIdaAk~aGADavKfQt~~~~d 56 (347)
T COG2089 12 DKKPFIIAEIGANHN----------GDLERAKELIDAAKEAGADAVKFQTFYTPD 56 (347)
T ss_pred CCCcEEEeeeccccc----------CcHHHHHHHHHHHHHcCcceeeeecccccc
Confidence 367899999999774 566777888999999999999988866665
No 410
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=22.61 E-value=1.4e+02 Score=31.83 Aligned_cols=85 Identities=9% Similarity=0.095 Sum_probs=56.3
Q ss_pred ccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEec-----cCCCHHHHHHHHHhcCccEEE-eCCh---
Q 040734 258 NSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYG-----RLNNVAEAVYMQHLMGIDGVI-VDLV--- 328 (361)
Q Consensus 258 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~-----Tvn~~~~~~~~~~~~GVdgI~-TD~p--- 328 (361)
..+.++++.+++.+++.+++.|..+.-..++.+.+.++|+..+.=. .+.|.-.++.+....||.-|= |+-|
T Consensus 93 L~ideii~iak~~~vdavHPGYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt 172 (1176)
T KOG0369|consen 93 LAIDEIISIAKKHNVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITT 172 (1176)
T ss_pred hhHHHHHHHHHHcCCCeecCCccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCccc
Confidence 4578899999999999999999987667899999999999765320 112222232232346765433 4443
Q ss_pred -HHHHHHHHHhcCCc
Q 040734 329 -QEITEAVYDMIKPA 342 (361)
Q Consensus 329 -~~~~~~l~~~~~~~ 342 (361)
+.+.++.++++-|-
T Consensus 173 ~~EA~eF~k~yG~Pv 187 (1176)
T KOG0369|consen 173 VEEALEFVKEYGLPV 187 (1176)
T ss_pred HHHHHHHHHhcCCcE
Confidence 44566667766554
No 411
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=22.60 E-value=5.5e+02 Score=22.86 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=28.3
Q ss_pred hHHHHHHHHcCCEEEEeccCCC-------HHHHHHHHHhcCccEEEe-CChHHH
Q 040734 286 PGAVTKIKESKLSLLTYGRLNN-------VAEAVYMQHLMGIDGVIV-DLVQEI 331 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn~-------~~~~~~~~~~~GVdgI~T-D~p~~~ 331 (361)
...++.++++|+.++.+ .-.+ .+++.+.+...++|-|++ .+...+
T Consensus 39 ~~~~~~A~~~gIp~~~~-~~~~~~~~~~~~~~~~~~l~~~~~Dliv~agy~~il 91 (207)
T PLN02331 39 CGGAEYARENGIPVLVY-PKTKGEPDGLSPDELVDALRGAGVDFVLLAGYLKLI 91 (207)
T ss_pred ChHHHHHHHhCCCEEEe-ccccCCCcccchHHHHHHHHhcCCCEEEEeCcchhC
Confidence 35577888889988887 3321 334434445688888887 554444
No 412
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=22.56 E-value=5.1e+02 Score=22.39 Aligned_cols=9 Identities=22% Similarity=0.748 Sum_probs=4.6
Q ss_pred hcCccEEEe
Q 040734 317 LMGIDGVIV 325 (361)
Q Consensus 317 ~~GVdgI~T 325 (361)
..|++|++.
T Consensus 100 ~~Ga~~yl~ 108 (216)
T PRK10840 100 DLDIEGIVL 108 (216)
T ss_pred HCCCeEEEE
Confidence 355555553
No 413
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=22.52 E-value=1.8e+02 Score=26.73 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe-----------CChHHHHHHHHHhcCCc
Q 040734 287 GAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV-----------DLVQEITEAVYDMIKPA 342 (361)
Q Consensus 287 ~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T-----------D~p~~~~~~l~~~~~~~ 342 (361)
+..+.+-+.|..|..| +-+|+-..+++. +.|+..||- -.|..+...+++...|-
T Consensus 114 ~Aae~Lv~eGF~VlPY-~~~D~v~akrL~-d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPv 178 (247)
T PF05690_consen 114 KAAEILVKEGFVVLPY-CTDDPVLAKRLE-DAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPV 178 (247)
T ss_dssp HHHHHHHHTT-EEEEE-E-S-HHHHHHHH-HTT-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSB
T ss_pred HHHHHHHHCCCEEeec-CCCCHHHHHHHH-HCCCCEEEecccccccCcCCCCHHHHHHHHHhcCCcE
Confidence 3445566789999999 777887777775 799888873 23555555555554343
No 414
>PRK00211 sulfur relay protein TusC; Validated
Probab=22.47 E-value=81 Score=25.49 Aligned_cols=37 Identities=8% Similarity=0.017 Sum_probs=30.1
Q ss_pred ccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCC
Q 040734 71 KENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDD 107 (361)
Q Consensus 71 pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~ 107 (361)
-+.+.+|++.|+...+-.-|++|.+..||++.+.-+.
T Consensus 15 ~~~~~eaLd~ala~~a~~~~v~vff~~DgV~~l~~~q 51 (119)
T PRK00211 15 TASGREGLDALLATSAFTEDIGVFFIDDGVFQLLPGQ 51 (119)
T ss_pred CHHHHHHHHHHHHHhcccCCeeEEEEhhhHHHHhcCC
Confidence 5688899999988665556999999999998887654
No 415
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.45 E-value=1.6e+02 Score=27.50 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHHHHhcc
Q 040734 75 IASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSY 133 (361)
Q Consensus 75 l~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~eL~~l 133 (361)
...-.+|+.+||+++-+-+|.|.|..+ .++ -..++.+||++|
T Consensus 214 ~~~~~aAva~Ga~Gl~iE~H~~pd~a~-----------~D~------~~sl~p~~l~~l 255 (266)
T PRK13398 214 IPMAKAAIAAGADGLMIEVHPEPEKAL-----------SDA------RQTLNFEEMKEL 255 (266)
T ss_pred HHHHHHHHHcCCCEEEEeccCCccccC-----------Cch------hhcCCHHHHHHH
Confidence 556777889999866666777776654 122 245677777765
No 416
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=22.44 E-value=6.6e+02 Score=23.65 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=55.2
Q ss_pred CCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc------cCChHHHHHHHHcCCEEEE----e-c---
Q 040734 238 TYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV------FRNPGAVTKIKESKLSLLT----Y-G--- 303 (361)
Q Consensus 238 ~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~------~~~~~~v~~~~~~Gl~v~~----w-~--- 303 (361)
.+|+++=.+-+. ++ +.+..+.+.|+..+..+.+.+ -.+.+.++.+|..|+.|=+ = +
T Consensus 72 ~VPValHLDHg~---------~~-e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~ 141 (282)
T TIGR01858 72 NMPLALHLDHHE---------SL-DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVED 141 (282)
T ss_pred CCCEEEECCCCC---------CH-HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccC
Confidence 678876554332 22 345566678898888776653 2367899999999988721 0 0
Q ss_pred -----c----CCCHHHHHHHHHhcCccE----------EEeCChHHHHHHHHHh
Q 040734 304 -----R----LNNVAEAVYMQHLMGIDG----------VIVDLVQEITEAVYDM 338 (361)
Q Consensus 304 -----T----vn~~~~~~~~~~~~GVdg----------I~TD~p~~~~~~l~~~ 338 (361)
. ..++++..++....|||. +....|..-.+.|+++
T Consensus 142 ~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I 195 (282)
T TIGR01858 142 DLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEI 195 (282)
T ss_pred CCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHH
Confidence 0 225677777766667664 4444455444455544
No 417
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=22.34 E-value=96 Score=25.60 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=18.4
Q ss_pred ChHHHHHHHHcCCEEEEeccCC
Q 040734 285 NPGAVTKIKESKLSLLTYGRLN 306 (361)
Q Consensus 285 ~~~~v~~~~~~Gl~v~~w~Tvn 306 (361)
-.++|+.+|++|++|.++.++.
T Consensus 46 lge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 46 LGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHCCCEEEEEEeee
Confidence 4689999999999999985554
No 418
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=22.33 E-value=1.6e+02 Score=25.37 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=40.7
Q ss_pred hHHHHHHHHcC---CEEEEeccCCCHHHHHHHHHhcCccEEEeCC--hHHHHHHHHHh--cCCcccccccCcccc
Q 040734 286 PGAVTKIKESK---LSLLTYGRLNNVAEAVYMQHLMGIDGVIVDL--VQEITEAVYDM--IKPAKVVEKEDNKSL 353 (361)
Q Consensus 286 ~~~v~~~~~~G---l~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~--p~~~~~~l~~~--~~~~~~~~~~~~~~~ 353 (361)
.+.++.+++.. .++-+= +++.++..+++ ..|+|.|+-|. |..+.++++.+ ..+....+.+|+.-+
T Consensus 67 ~~av~~~~~~~~~~~~I~VE--v~~~ee~~ea~-~~g~d~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~ 138 (169)
T PF01729_consen 67 EEAVKAARQAAPEKKKIEVE--VENLEEAEEAL-EAGADIIMLDNMSPEDLKEAVEELRELNPRVKIEASGGITL 138 (169)
T ss_dssp HHHHHHHHHHSTTTSEEEEE--ESSHHHHHHHH-HTT-SEEEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSST
T ss_pred HHHHHHHHHhCCCCceEEEE--cCCHHHHHHHH-HhCCCEEEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCH
Confidence 46666666642 234443 56788888887 69999999987 66777777643 334455555555443
No 419
>PRK08462 biotin carboxylase; Validated
Probab=21.93 E-value=5.6e+02 Score=25.41 Aligned_cols=80 Identities=8% Similarity=0.035 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEec-----cCCCHHHHHHHHHhcCccEE-----EeCChH
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYG-----RLNNVAEAVYMQHLMGIDGV-----IVDLVQ 329 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w~-----Tvn~~~~~~~~~~~~GVdgI-----~TD~p~ 329 (361)
++..++++++.+++++++.+..+--+..+.+.+.++|+.+..=. ...|...+++++...||... .....+
T Consensus 65 ~~~l~~~~~~~~~D~i~pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~ 144 (445)
T PRK08462 65 IPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYE 144 (445)
T ss_pred HHHHHHHHHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHH
Confidence 45667788888888888776543234566667777887654320 13445555555555665532 223344
Q ss_pred HHHHHHHHhc
Q 040734 330 EITEAVYDMI 339 (361)
Q Consensus 330 ~~~~~l~~~~ 339 (361)
.+.++.++..
T Consensus 145 ~~~~~~~~~g 154 (445)
T PRK08462 145 EAKKIAKEIG 154 (445)
T ss_pred HHHHHHHHcC
Confidence 4555555543
No 420
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=21.87 E-value=5.9e+02 Score=24.52 Aligned_cols=103 Identities=13% Similarity=0.037 Sum_probs=57.8
Q ss_pred HHHHHHHHHHC-CCCCEEEEccCCCccccccccccHHHHHHH---HHhcCCcEEEcCCccc---c--C--------ChHH
Q 040734 226 PDAAVLIRKLQ-STYPVFFLTNGGTEIFYDVRRNSLEEAVKV---CLEGGLQGIVSEVKGV---F--R--------NPGA 288 (361)
Q Consensus 226 ~~~l~~l~~~~-p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~---~~~~~~~~i~~~~~~~---~--~--------~~~~ 288 (361)
.++++.+|+.. +++++++-...... ..+ ..+.++.+++ ....|++.+++...+. . . ...+
T Consensus 191 ~eiv~aIR~~vG~d~~v~iRi~~~D~-~~~--g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~ 267 (353)
T cd02930 191 VEIVRAVRAAVGEDFIIIYRLSMLDL-VEG--GSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWA 267 (353)
T ss_pred HHHHHHHHHHcCCCceEEEEeccccc-CCC--CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHH
Confidence 47788888876 46777643332110 000 0134444444 4456777777642210 0 0 0223
Q ss_pred HHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 289 VTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 289 v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
.+.+++. +++|.+=+.+.+++++++++..-++|+|.--++-.+
T Consensus 268 ~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 268 TAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred HHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 4455553 778877667889999999984344998877665444
No 421
>PRK08999 hypothetical protein; Provisional
Probab=21.74 E-value=2.7e+02 Score=26.12 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=33.8
Q ss_pred HHHHhcCCcEEEcCCccccCChHHHHHHHHcCC-EEEEeccCCCHHHHHHHHHhcCccEEE
Q 040734 265 KVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKL-SLLTYGRLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl-~v~~w~Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
+.+...+++|+|+....+ ..... ++.|. .+... ++++.+++.++. ..|+|.|+
T Consensus 198 ~la~~~~~~GvHl~~~d~--~~~~~---r~~~~~~~ig~-S~h~~~~~~~a~-~~~~dyi~ 251 (312)
T PRK08999 198 ELAEDLGADGVHLTSAQL--AALAA---RPLPAGRWVAA-SCHDAEELARAQ-RLGVDFAV 251 (312)
T ss_pred HHHHhcCCCEEEcChhhc--ChHhh---ccCCCCCEEEE-ecCCHHHHHHHH-hcCCCEEE
Confidence 567788999999875432 22112 22331 23445 578888887775 58999885
No 422
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=21.71 E-value=5.8e+02 Score=25.24 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCC
Q 040734 201 RVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQST 238 (361)
Q Consensus 201 ~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~ 238 (361)
.+++.+-++.... .-.+++.|+|+++++...+...+
T Consensus 85 ~fa~~vk~V~~a~--~~PLIL~~~D~evl~aale~~~~ 120 (386)
T PF03599_consen 85 EFAKAVKKVAEAV--DVPLILCGCDPEVLKAALEACAG 120 (386)
T ss_dssp HHHHHHHHHHHC---SSEEEEESSHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHhCc
Confidence 4444444443333 45789999999999988887653
No 423
>PLN02705 beta-amylase
Probab=21.50 E-value=89 Score=32.64 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=0.0
Q ss_pred EEEEeccCCCHHHHHH---HHHhcCccEEEeC
Q 040734 298 SLLTYGRLNNVAEAVY---MQHLMGIDGVIVD 326 (361)
Q Consensus 298 ~v~~w~Tvn~~~~~~~---~~~~~GVdgI~TD 326 (361)
.|..|+++|++..+.. .++.+|||||+.|
T Consensus 257 ~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvD 288 (681)
T PLN02705 257 IINNFCQLVDPEGVRQELSHMKSLNVDGVVVD 288 (681)
T ss_pred eeccCCcccCHHHHHHHHHHHHHcCCCEEEEe
No 424
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=21.49 E-value=4.2e+02 Score=22.83 Aligned_cols=16 Identities=0% Similarity=0.073 Sum_probs=7.6
Q ss_pred HHHHHHHHcCCEEEEe
Q 040734 287 GAVTKIKESKLSLLTY 302 (361)
Q Consensus 287 ~~v~~~~~~Gl~v~~w 302 (361)
++++.++++|+++.+-
T Consensus 82 ~~L~~L~~~g~~~~i~ 97 (205)
T TIGR01454 82 ELLAELRADGVGTAIA 97 (205)
T ss_pred HHHHHHHHCCCeEEEE
Confidence 4444444445444444
No 425
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=21.38 E-value=7.3e+02 Score=23.84 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=12.5
Q ss_pred cCccEEEeCChHHHHHH
Q 040734 318 MGIDGVIVDLVQEITEA 334 (361)
Q Consensus 318 ~GVdgI~TD~p~~~~~~ 334 (361)
.|.|.++-.+|..+..+
T Consensus 289 ~ga~i~vm~hp~s~~~~ 305 (319)
T PRK04452 289 AGADIFMMRHPESVKTL 305 (319)
T ss_pred hcCcEEEEeCHHHHHHH
Confidence 68888888888776544
No 426
>PRK11596 cyclic-di-GMP phosphodiesterase; Provisional
Probab=21.32 E-value=2e+02 Score=26.19 Aligned_cols=46 Identities=4% Similarity=-0.119 Sum_probs=35.4
Q ss_pred hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEE---eCChHHHHH
Q 040734 286 PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVI---VDLVQEITE 333 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~---TD~p~~~~~ 333 (361)
..++..+|+.|..|++= .|.+.++...+. .+|||.+. --.|....+
T Consensus 199 ~~lv~~a~~~~~~viAe-GVEt~eq~~~l~-~lG~d~~QGy~~~~P~~~~~ 247 (255)
T PRK11596 199 SQLLHLMNRYCRGVIVE-GVETPEEWRDVQ-RSPAFAAQGYFLSRPAPFET 247 (255)
T ss_pred HHHHHHHHHcCCeEEEE-eCCCHHHHHHHH-HCCCCEeecCccCCCCCHHH
Confidence 46688899999999999 699999998875 79999554 444555443
No 427
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=21.26 E-value=4.4e+02 Score=22.57 Aligned_cols=35 Identities=9% Similarity=0.149 Sum_probs=25.8
Q ss_pred hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCcc
Q 040734 286 PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGID 321 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVd 321 (361)
.++++.+|+.|+++.+- |-+....+...+...|++
T Consensus 112 ~~~L~~l~~~g~~~~i~-T~~~~~~~~~~l~~~gl~ 146 (197)
T TIGR01548 112 KGLLRELHRAPKGMAVV-TGRPRKDAAKFLTTHGLE 146 (197)
T ss_pred HHHHHHHHHcCCcEEEE-CCCCHHHHHHHHHHcCch
Confidence 68888999999999888 755555566665556754
No 428
>PF09050 SNN_linker: Stannin unstructured linker; InterPro: IPR015136 This entry represents an unstructured protein region which connects two adjacent stannin helical domains. It contains a conserved CXC metal-binding motif and a putative 14-3-3-zeta binding domain. Upon coordinating dimethytin, considerable structural or dynamic changes in the flexible loop region of SNN may take place, recruiting other binding partners such as 14-3-3-zeta, and thereby initiating the apoptotic cascade []. ; PDB: 1ZZA_A.
Probab=21.16 E-value=72 Score=18.03 Aligned_cols=20 Identities=40% Similarity=0.709 Sum_probs=11.7
Q ss_pred cccccccCcccccCCCCCCC
Q 040734 342 AKVVEKEDNKSLNGEGEDGE 361 (361)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~ 361 (361)
....+.++++|.-|+|+-.|
T Consensus 6 qr~sqsedeesivgegetke 25 (26)
T PF09050_consen 6 QRISQSEDEESIVGEGETKE 25 (26)
T ss_dssp -SS-SS---TTTTTTTSSST
T ss_pred hhhccccchhhcccCCccCC
Confidence 34578899999999998643
No 429
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=21.15 E-value=7.9e+02 Score=24.11 Aligned_cols=96 Identities=14% Similarity=0.295 Sum_probs=63.9
Q ss_pred EcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccc------cCChHHHHHHHH-
Q 040734 222 STFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGV------FRNPGAVTKIKE- 294 (361)
Q Consensus 222 ~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~------~~~~~~v~~~~~- 294 (361)
.+++++.++++|+.. +.|+..= + + .+. +....+.+.|+++|.+.-..- ..+-..+..+.+
T Consensus 209 ~~~tW~di~wlr~~~-~~PiivK--g-------V--~~~-~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~a 275 (367)
T PLN02493 209 RTLSWKDVQWLQTIT-KLPILVK--G-------V--LTG-EDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKA 275 (367)
T ss_pred CCCCHHHHHHHHhcc-CCCEEee--c-------C--CCH-HHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHH
Confidence 457899999999864 4666431 1 1 122 334566789999887654321 011233333333
Q ss_pred --cCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHH
Q 040734 295 --SKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEI 331 (361)
Q Consensus 295 --~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~ 331 (361)
..+.|++-|-|.+..++.+.+ .+|.+++..-+|-..
T Consensus 276 v~~~~~vi~dGGIr~G~Dv~KAL-ALGA~aV~iGr~~l~ 313 (367)
T PLN02493 276 TQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVF 313 (367)
T ss_pred hCCCCeEEEeCCcCcHHHHHHHH-HcCCCEEEEcHHHHH
Confidence 238899998899999999987 699999999988774
No 430
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=21.11 E-value=4.7e+02 Score=26.04 Aligned_cols=80 Identities=11% Similarity=0.088 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEEe--c---cCCCHHHHHHHHHhcCccEE-----EeCChH
Q 040734 260 LEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTY--G---RLNNVAEAVYMQHLMGIDGV-----IVDLVQ 329 (361)
Q Consensus 260 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~w--~---Tvn~~~~~~~~~~~~GVdgI-----~TD~p~ 329 (361)
.+..++++++.+++++++.+..+.-...+...+.+.|+.+..= . ...|...+++++...||... +.+.++
T Consensus 63 ~~~l~~~a~~~~id~I~pg~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~ 142 (449)
T TIGR00514 63 IPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEE 142 (449)
T ss_pred HHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHH
Confidence 4556778888888888876643322445566777788765431 0 24555566666656776532 334555
Q ss_pred HHHHHHHHhc
Q 040734 330 EITEAVYDMI 339 (361)
Q Consensus 330 ~~~~~l~~~~ 339 (361)
.+.++.++..
T Consensus 143 e~~~~~~~ig 152 (449)
T TIGR00514 143 ENVRIAKRIG 152 (449)
T ss_pred HHHHHHHHhC
Confidence 5666665544
No 431
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=21.04 E-value=1.4e+02 Score=27.15 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=28.4
Q ss_pred hHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEe
Q 040734 286 PGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIV 325 (361)
Q Consensus 286 ~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~T 325 (361)
-++++.+|+.++--..| |.+.++...+. ..|+|-|..
T Consensus 146 vemlr~A~~k~l~t~~y--V~s~~eAqa~~-~aGadiiv~ 182 (276)
T COG5564 146 VEMLREAHAKDLLTTPY--VFSFEEAQAMT-KAGADIIVA 182 (276)
T ss_pred HHHHHHHHhccccccce--ecCHHHHHHHH-HcCcceeee
Confidence 48889999999888777 67778887776 588775543
No 432
>PRK05926 hypothetical protein; Provisional
Probab=20.90 E-value=6e+02 Score=24.86 Aligned_cols=27 Identities=4% Similarity=-0.156 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCEEE---EeccCCCHHHHHH
Q 040734 287 GAVTKIKESKLSLL---TYGRLNNVAEAVY 313 (361)
Q Consensus 287 ~~v~~~~~~Gl~v~---~w~Tvn~~~~~~~ 313 (361)
+.++.+|+.|+++. .+|...+.++...
T Consensus 211 ~~i~~a~~~Gi~~~sgmi~G~gEt~edrv~ 240 (370)
T PRK05926 211 EIHKTAHSLGIPSNATMLCYHRETPEDIVT 240 (370)
T ss_pred HHHHHHHHcCCcccCceEEeCCCCHHHHHH
Confidence 67888999999884 4655566655443
No 433
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=20.68 E-value=3.5e+02 Score=25.85 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=43.2
Q ss_pred hHHHHHHHH----c--CCEEEEeccCCCHHHHHHHHHh------cCccEEEeCCh-----------HHHHHHHHHhcCCc
Q 040734 286 PGAVTKIKE----S--KLSLLTYGRLNNVAEAVYMQHL------MGIDGVIVDLV-----------QEITEAVYDMIKPA 342 (361)
Q Consensus 286 ~~~v~~~~~----~--Gl~v~~w~Tvn~~~~~~~~~~~------~GVdgI~TD~p-----------~~~~~~l~~~~~~~ 342 (361)
.+.++.+++ . ..++-+= +++.++..+++ . .|+|.|+-|.. +.+.+++.... ..
T Consensus 187 ~~av~~~r~~~~~~~~~~kIeVE--v~tleea~ea~-~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~-~~ 262 (308)
T PLN02716 187 TNAVQSADKYLEEKGLSMKIEVE--TRTLEEVKEVL-EYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELIN-GR 262 (308)
T ss_pred HHHHHHHHHhhhhcCCCeeEEEE--ECCHHHHHHHH-HhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhC-CC
Confidence 366777776 1 2456665 67889998887 7 89999999876 55677766443 33
Q ss_pred ccccccCcccc
Q 040734 343 KVVEKEDNKSL 353 (361)
Q Consensus 343 ~~~~~~~~~~~ 353 (361)
...+.+|+.-+
T Consensus 263 ~~lEaSGGIt~ 273 (308)
T PLN02716 263 FETEASGNVTL 273 (308)
T ss_pred ceEEEECCCCH
Confidence 44666666543
No 434
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=20.48 E-value=96 Score=26.35 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=6.7
Q ss_pred HHHHhcCccEEE
Q 040734 313 YMQHLMGIDGVI 324 (361)
Q Consensus 313 ~~~~~~GVdgI~ 324 (361)
+++..+|||.++
T Consensus 69 ~~l~~~Gvd~~~ 80 (157)
T PF06574_consen 69 ELLESLGVDYVI 80 (157)
T ss_dssp HHHHHTTESEEE
T ss_pred HHHHHcCCCEEE
Confidence 344457777654
No 435
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=20.38 E-value=2e+02 Score=25.75 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=26.2
Q ss_pred ChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCc
Q 040734 285 NPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGI 320 (361)
Q Consensus 285 ~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GV 320 (361)
+.+.+++++++|+.+..- |-....++..++..+|+
T Consensus 20 ~~~ai~~l~~~G~~~vi~-TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 20 AREALEELKDLGFPIVFV-SSKTRAEQEYYREELGV 54 (225)
T ss_pred HHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHcCC
Confidence 457778888888888888 77877777666556775
No 436
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=20.32 E-value=7.6e+02 Score=23.55 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=29.4
Q ss_pred HHHHHHHHc-CCEEEEeccCCCHHHHHHHHHhcCccEEEeC
Q 040734 287 GAVTKIKES-KLSLLTYGRLNNVAEAVYMQHLMGIDGVIVD 326 (361)
Q Consensus 287 ~~v~~~~~~-Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD 326 (361)
+.+..++++ ++.++.=|-|.+.+++.+++ .+|+++|..=
T Consensus 229 ~~v~~~~~~~~ipIig~GGI~s~~Da~e~l-~aGA~~V~v~ 268 (334)
T PRK07565 229 RWIAILSGRVGADLAATTGVHDAEDVIKML-LAGADVVMIA 268 (334)
T ss_pred HHHHHHHhhcCCCEEEECCCCCHHHHHHHH-HcCCCceeee
Confidence 345555443 68888887899999999998 5999988753
No 437
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.30 E-value=4.3e+02 Score=23.87 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=31.2
Q ss_pred ccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcCCEEEE
Q 040734 258 NSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLT 301 (361)
Q Consensus 258 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~Gl~v~~ 301 (361)
.++++.++.+.+.|+.+|-+.........++.+.+.+.|+.+..
T Consensus 15 ~~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 15 YDFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred CCHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 46888889999999999876542211224666677899999864
No 438
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=20.28 E-value=7.3e+02 Score=23.36 Aligned_cols=110 Identities=14% Similarity=0.188 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCCH-----------HHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHh
Q 040734 201 RVIQAILKIVFEFAENRPIIFSTFQP-----------DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLE 269 (361)
Q Consensus 201 ~~v~~vl~~l~~~~~~~rv~~~Sf~~-----------~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~ 269 (361)
..+..+++.-++.+ .+++++.... .++..+.+. ..+|+++=.+-+. ++ +.+..+.+
T Consensus 29 e~~~avi~AAee~~--sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~-~~VPV~lHLDHg~---------~~-e~i~~Ai~ 95 (284)
T PRK09195 29 ETMQVVVETAAELH--SPVIIAGTPGTFSYAGTEYLLAIVSAAAKQ-YHHPLALHLDHHE---------KF-DDIAQKVR 95 (284)
T ss_pred HHHHHHHHHHHHhC--CCEEEEcChhHHhhCCHHHHHHHHHHHHHH-CCCCEEEECCCCC---------CH-HHHHHHHH
Confidence 35566666665553 4566654321 122223333 3678776554332 23 33555667
Q ss_pred cCCcEEEcCCccc------cCChHHHHHHHHcCCEEEE----e-cc------------CCCHHHHHHHHHhcCccEE
Q 040734 270 GGLQGIVSEVKGV------FRNPGAVTKIKESKLSLLT----Y-GR------------LNNVAEAVYMQHLMGIDGV 323 (361)
Q Consensus 270 ~~~~~i~~~~~~~------~~~~~~v~~~~~~Gl~v~~----w-~T------------vn~~~~~~~~~~~~GVdgI 323 (361)
.|+..+-.+.+.+ ..|.+.++.+|..|+.|=+ = +. .-++++..++....|||.+
T Consensus 96 ~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 172 (284)
T PRK09195 96 SGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSL 172 (284)
T ss_pred cCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEE
Confidence 8999888877653 2467999999999987721 0 00 1267788887766677643
No 439
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=20.19 E-value=3.8e+02 Score=27.41 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=41.6
Q ss_pred HHHHhcCCcEEEcCCccc--cCChHHHHHHHHc--CCEEEEeccCCCHHHHHHHHHhcCccEEE
Q 040734 265 KVCLEGGLQGIVSEVKGV--FRNPGAVTKIKES--KLSLLTYGRLNNVAEAVYMQHLMGIDGVI 324 (361)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~--~~~~~~v~~~~~~--Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~ 324 (361)
....+.|++.+.++...- ...-+.++++++. ++.|.+= +|-+.++.+.++ ++|+|+|.
T Consensus 247 ~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG-~V~t~~~a~~~~-~aGad~I~ 308 (495)
T PTZ00314 247 AALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAG-NVVTADQAKNLI-DAGADGLR 308 (495)
T ss_pred HHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEEC-CcCCHHHHHHHH-HcCCCEEE
Confidence 334467888888765210 0123678899887 5777775 899999998887 69999995
No 440
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=20.03 E-value=6.5e+02 Score=22.64 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=49.0
Q ss_pred cCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCChHHHHHHHHcC-----C
Q 040734 223 TFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESK-----L 297 (361)
Q Consensus 223 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~G-----l 297 (361)
+|..+.++.+++. +.++.+-... .|.. ......++.+.+.|++.+.++... ..+.++.+.+.. .
T Consensus 40 ~~G~~~i~~l~~~--~~~i~~D~Kl-----~Di~-~t~~~~i~~~~~~gad~itvH~~a---g~~~i~~~~~~~~~~~~~ 108 (230)
T PRK00230 40 AGGPQFVRELKQR--GFKVFLDLKL-----HDIP-NTVAKAVRALAKLGVDMVNVHASG---GPRMMKAAREALEPKSRP 108 (230)
T ss_pred hcCHHHHHHHHhc--CCCEEEEeeh-----hhcc-ccHHHHHHHHHHcCCCEEEEcccC---CHHHHHHHHHHhhccCCC
Confidence 6778888888876 2333221111 1111 123344444567888888777642 455555554421 2
Q ss_pred EEEEec--cCCCHHHHH----------------HHHHhcCccEEEeCChH
Q 040734 298 SLLTYG--RLNNVAEAV----------------YMQHLMGIDGVIVDLVQ 329 (361)
Q Consensus 298 ~v~~w~--Tvn~~~~~~----------------~~~~~~GVdgI~TD~p~ 329 (361)
.+...+ |..+..++. +...++|+||+.+....
T Consensus 109 ~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~~ 158 (230)
T PRK00230 109 LLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQE 158 (230)
T ss_pred eEEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChHH
Confidence 233221 223323332 11235799999998655
Done!