Query 040735
Match_columns 779
No_of_seqs 660 out of 4157
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 11:16:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.9E-82 1.5E-86 726.2 46.4 658 26-720 18-693 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.8E-53 1.5E-57 513.6 38.9 484 182-702 181-714 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.5E-43 3.2E-48 371.1 15.6 278 190-474 1-284 (287)
4 KOG0444 Cytoskeletal regulator 99.7 2.1E-18 4.7E-23 181.0 -3.5 226 543-779 55-285 (1255)
5 PLN00113 leucine-rich repeat r 99.6 1.8E-15 3.9E-20 185.5 10.9 149 543-699 93-243 (968)
6 PLN00113 leucine-rich repeat r 99.6 2.2E-15 4.8E-20 184.8 10.4 127 567-699 139-267 (968)
7 KOG0617 Ras suppressor protein 99.6 6.8E-17 1.5E-21 143.6 -4.6 159 560-729 25-184 (264)
8 KOG0444 Cytoskeletal regulator 99.5 5.3E-16 1.1E-20 163.3 -3.4 205 562-777 49-260 (1255)
9 KOG0617 Ras suppressor protein 99.5 2.5E-16 5.4E-21 140.0 -5.1 135 591-729 26-161 (264)
10 PRK04841 transcriptional regul 99.5 1.9E-12 4.2E-17 158.0 24.8 293 185-522 14-332 (903)
11 KOG0472 Leucine-rich repeat pr 99.4 8.1E-14 1.8E-18 140.2 2.1 203 561-778 221-543 (565)
12 PRK00411 cdc6 cell division co 99.4 8.5E-11 1.8E-15 128.9 26.0 302 183-501 28-358 (394)
13 KOG4194 Membrane glycoprotein 99.4 2E-13 4.4E-18 143.4 4.8 198 569-779 126-334 (873)
14 PLN03210 Resistant to P. syrin 99.3 1.3E-11 2.9E-16 151.9 15.8 112 566-686 609-722 (1153)
15 KOG0472 Leucine-rich repeat pr 99.3 1.7E-14 3.7E-19 145.0 -8.1 203 562-778 85-291 (565)
16 TIGR02928 orc1/cdc6 family rep 99.3 2.1E-09 4.5E-14 116.7 28.6 303 184-502 14-351 (365)
17 KOG4194 Membrane glycoprotein 99.3 1.1E-12 2.4E-17 137.9 1.4 221 544-778 174-408 (873)
18 TIGR03015 pepcterm_ATPase puta 99.2 9.7E-10 2.1E-14 113.8 21.1 182 212-399 43-242 (269)
19 COG2909 MalT ATP-dependent tra 99.2 2E-09 4.3E-14 119.7 21.0 298 184-524 18-340 (894)
20 PF01637 Arch_ATPase: Archaeal 99.2 1.6E-10 3.4E-15 117.0 11.5 196 187-394 1-233 (234)
21 KOG0618 Serine/threonine phosp 99.1 1.1E-11 2.3E-16 137.6 1.1 198 541-773 239-487 (1081)
22 PRK00080 ruvB Holliday junctio 99.1 9.3E-10 2E-14 116.8 14.2 280 184-502 24-311 (328)
23 PRK15370 E3 ubiquitin-protein 99.1 7E-11 1.5E-15 136.1 5.9 125 541-686 197-321 (754)
24 PRK15370 E3 ubiquitin-protein 99.1 1.5E-10 3.3E-15 133.4 7.9 183 568-778 199-383 (754)
25 TIGR00635 ruvB Holliday juncti 99.1 5.1E-09 1.1E-13 110.4 18.6 271 185-502 4-290 (305)
26 KOG4237 Extracellular matrix p 99.0 1.4E-11 3.1E-16 124.1 -2.3 186 588-777 80-337 (498)
27 PF14580 LRR_9: Leucine-rich r 99.0 4E-10 8.6E-15 105.9 4.0 132 562-704 13-152 (175)
28 COG3899 Predicted ATPase [Gene 99.0 1.1E-08 2.3E-13 120.6 16.5 311 186-519 1-383 (849)
29 PF05729 NACHT: NACHT domain 99.0 3.1E-09 6.7E-14 101.2 9.9 142 213-361 1-162 (166)
30 PTZ00112 origin recognition co 98.9 1E-07 2.2E-12 107.1 21.7 303 184-502 754-1087(1164)
31 PRK15387 E3 ubiquitin-protein 98.9 2.8E-09 6.1E-14 122.3 9.3 157 598-779 282-439 (788)
32 KOG0532 Leucine-rich repeat (L 98.9 6.2E-11 1.3E-15 124.9 -6.2 155 590-753 90-244 (722)
33 PRK15387 E3 ubiquitin-protein 98.8 6.7E-09 1.4E-13 119.2 9.1 108 568-699 222-329 (788)
34 KOG0618 Serine/threonine phosp 98.8 1.9E-10 4.2E-15 127.9 -3.9 151 598-753 241-417 (1081)
35 COG2256 MGS1 ATPase related to 98.8 4.7E-08 1E-12 100.2 12.7 171 184-391 29-208 (436)
36 KOG4237 Extracellular matrix p 98.8 9.2E-10 2E-14 111.3 -0.9 105 599-704 68-176 (498)
37 COG4886 Leucine-rich repeat (L 98.8 6.2E-09 1.3E-13 114.3 5.1 179 592-777 110-292 (394)
38 PF14580 LRR_9: Leucine-rich r 98.7 3.6E-09 7.8E-14 99.4 2.5 103 596-702 17-123 (175)
39 KOG4658 Apoptotic ATPase [Sign 98.7 5.7E-09 1.2E-13 122.4 4.3 129 596-726 543-676 (889)
40 PRK06893 DNA replication initi 98.7 1.2E-07 2.6E-12 94.9 12.9 155 213-399 40-207 (229)
41 cd00116 LRR_RI Leucine-rich re 98.7 6.3E-09 1.4E-13 110.8 3.5 133 564-702 77-231 (319)
42 PRK13342 recombination factor 98.7 3.8E-07 8.1E-12 100.0 16.6 178 185-397 12-198 (413)
43 KOG0532 Leucine-rich repeat (L 98.6 6.7E-09 1.5E-13 109.9 -0.5 130 563-703 116-245 (722)
44 PLN03150 hypothetical protein; 98.6 4.4E-08 9.6E-13 112.7 6.1 99 599-697 419-520 (623)
45 PLN03150 hypothetical protein; 98.6 6.7E-08 1.5E-12 111.2 7.3 111 569-685 419-532 (623)
46 cd00116 LRR_RI Leucine-rich re 98.6 2.2E-08 4.8E-13 106.6 2.7 85 595-679 133-232 (319)
47 PF13401 AAA_22: AAA domain; P 98.6 1.5E-07 3.3E-12 85.6 7.3 117 212-331 4-125 (131)
48 TIGR03420 DnaA_homol_Hda DnaA 98.5 6.3E-07 1.4E-11 90.1 12.2 170 190-397 22-203 (226)
49 PRK05564 DNA polymerase III su 98.5 2.4E-06 5.1E-11 90.2 16.9 180 185-395 4-190 (313)
50 KOG1259 Nischarin, modulator o 98.5 1.8E-08 3.8E-13 98.4 -0.2 130 621-778 284-415 (490)
51 PRK07003 DNA polymerase III su 98.5 4.1E-06 8.9E-11 94.2 18.2 195 185-396 16-222 (830)
52 KOG1259 Nischarin, modulator o 98.5 1.2E-08 2.6E-13 99.5 -1.4 126 566-702 282-409 (490)
53 PTZ00202 tuzin; Provisional 98.5 3.2E-06 6.9E-11 88.6 16.0 169 181-361 258-433 (550)
54 KOG3207 Beta-tubulin folding c 98.5 4.2E-08 9.1E-13 101.0 2.1 158 563-727 141-310 (505)
55 PRK14961 DNA polymerase III su 98.5 4.3E-06 9.3E-11 89.9 17.7 194 185-394 16-219 (363)
56 PF13855 LRR_8: Leucine rich r 98.5 1.3E-07 2.8E-12 72.9 4.1 57 598-654 1-59 (61)
57 KOG2028 ATPase related to the 98.5 2.4E-06 5.3E-11 86.0 13.9 158 210-390 160-331 (554)
58 PF13191 AAA_16: AAA ATPase do 98.5 4.1E-07 9E-12 88.2 8.4 49 186-237 1-49 (185)
59 cd00009 AAA The AAA+ (ATPases 98.5 1.3E-06 2.7E-11 81.1 10.7 125 188-333 1-131 (151)
60 PRK12402 replication factor C 98.4 3.3E-06 7.2E-11 90.6 15.2 200 185-395 15-226 (337)
61 PF13173 AAA_14: AAA domain 98.4 3.8E-07 8.2E-12 82.4 6.5 119 213-354 3-127 (128)
62 PRK14949 DNA polymerase III su 98.4 4.6E-06 9.9E-11 95.7 16.5 195 185-395 16-220 (944)
63 PRK14963 DNA polymerase III su 98.4 9.3E-07 2E-11 98.1 10.7 199 185-393 14-215 (504)
64 COG3903 Predicted ATPase [Gene 98.4 4E-07 8.7E-12 94.2 7.2 290 211-521 13-313 (414)
65 PRK04195 replication factor C 98.4 9.5E-06 2.1E-10 90.8 18.8 247 185-474 14-271 (482)
66 PRK14960 DNA polymerase III su 98.4 5.4E-06 1.2E-10 92.3 16.3 193 185-394 15-218 (702)
67 PRK12323 DNA polymerase III su 98.4 7.7E-06 1.7E-10 90.8 16.4 197 185-395 16-225 (700)
68 PF13855 LRR_8: Leucine rich r 98.4 2.7E-07 5.9E-12 71.1 3.6 58 621-679 1-60 (61)
69 COG1474 CDC6 Cdc6-related prot 98.4 2.3E-05 5E-10 83.4 19.1 205 186-395 18-238 (366)
70 PF05496 RuvB_N: Holliday junc 98.4 1.2E-05 2.6E-10 77.4 15.3 182 185-400 24-226 (233)
71 COG4886 Leucine-rich repeat (L 98.4 4E-07 8.7E-12 100.0 5.7 146 569-727 141-286 (394)
72 cd01128 rho_factor Transcripti 98.3 7.9E-07 1.7E-11 89.2 6.9 90 213-303 17-114 (249)
73 PLN03025 replication factor C 98.3 9.8E-06 2.1E-10 85.7 15.5 183 185-393 13-198 (319)
74 PRK14957 DNA polymerase III su 98.3 1.2E-05 2.5E-10 89.6 16.4 183 185-395 16-221 (546)
75 PRK08727 hypothetical protein; 98.3 9.2E-06 2E-10 81.5 14.2 148 213-392 42-201 (233)
76 PRK07940 DNA polymerase III su 98.3 1.5E-05 3.2E-10 85.8 16.5 184 185-395 5-213 (394)
77 PRK06645 DNA polymerase III su 98.3 1.6E-05 3.5E-10 87.8 17.2 196 185-393 21-227 (507)
78 TIGR02903 spore_lon_C ATP-depe 98.3 7.1E-06 1.5E-10 93.8 14.7 171 186-363 155-367 (615)
79 PRK00440 rfc replication facto 98.3 1.6E-05 3.6E-10 84.5 16.6 182 185-394 17-202 (319)
80 PRK07471 DNA polymerase III su 98.3 2.3E-05 5E-10 83.5 17.5 199 184-396 18-239 (365)
81 PRK08691 DNA polymerase III su 98.3 1.5E-05 3.3E-10 89.6 16.0 194 185-395 16-220 (709)
82 PRK09112 DNA polymerase III su 98.3 2.9E-05 6.3E-10 82.3 17.1 199 183-396 21-241 (351)
83 PRK14956 DNA polymerase III su 98.3 4.4E-06 9.6E-11 90.4 10.8 197 185-393 18-220 (484)
84 PRK14951 DNA polymerase III su 98.3 2.2E-05 4.7E-10 88.6 16.7 195 185-395 16-225 (618)
85 TIGR02397 dnaX_nterm DNA polym 98.3 3.5E-05 7.6E-10 83.3 17.9 183 185-396 14-219 (355)
86 TIGR00678 holB DNA polymerase 98.3 3E-05 6.4E-10 75.4 15.6 90 291-390 95-186 (188)
87 PRK07994 DNA polymerase III su 98.3 1.6E-05 3.6E-10 89.8 15.5 196 185-396 16-221 (647)
88 PRK13341 recombination factor 98.3 1.5E-05 3.2E-10 92.1 15.4 173 185-391 28-213 (725)
89 PRK09087 hypothetical protein; 98.2 2.1E-05 4.7E-10 78.2 14.4 142 212-396 44-196 (226)
90 PRK05896 DNA polymerase III su 98.2 1.4E-05 3.1E-10 88.9 14.2 196 185-396 16-222 (605)
91 PRK14958 DNA polymerase III su 98.2 2.7E-05 5.8E-10 86.8 16.3 183 185-394 16-219 (509)
92 PRK14964 DNA polymerase III su 98.2 4.8E-05 1E-09 83.5 16.8 182 185-393 13-215 (491)
93 PF12799 LRR_4: Leucine Rich r 98.2 1.7E-06 3.8E-11 61.0 3.7 39 599-637 2-40 (44)
94 PRK08084 DNA replication initi 98.2 3.9E-05 8.6E-10 77.1 15.0 154 213-398 46-212 (235)
95 KOG3207 Beta-tubulin folding c 98.2 3.5E-07 7.5E-12 94.4 0.1 205 565-775 118-339 (505)
96 PRK14962 DNA polymerase III su 98.2 4.3E-05 9.4E-10 84.2 16.4 186 185-398 14-222 (472)
97 PRK09376 rho transcription ter 98.2 3.8E-06 8.3E-11 87.7 7.6 89 213-302 170-266 (416)
98 PRK08903 DnaA regulatory inact 98.2 2.3E-05 5E-10 78.7 13.0 152 212-399 42-203 (227)
99 PRK14955 DNA polymerase III su 98.2 3.7E-05 8.1E-10 83.7 15.3 200 185-394 16-227 (397)
100 PRK14969 DNA polymerase III su 98.2 5E-05 1.1E-09 85.3 16.5 177 185-392 16-217 (527)
101 TIGR01242 26Sp45 26S proteasom 98.1 3E-05 6.5E-10 83.7 12.6 181 183-389 120-328 (364)
102 KOG4579 Leucine-rich repeat (L 98.1 7.3E-07 1.6E-11 77.4 -0.2 94 592-687 47-141 (177)
103 PRK14970 DNA polymerase III su 98.1 0.00013 2.7E-09 79.1 17.0 181 185-392 17-206 (367)
104 PRK09111 DNA polymerase III su 98.0 9.7E-05 2.1E-09 83.6 16.3 199 185-396 24-234 (598)
105 KOG0531 Protein phosphatase 1, 98.0 5.7E-07 1.2E-11 99.0 -1.6 106 592-701 89-195 (414)
106 PRK05642 DNA replication initi 98.0 9.4E-05 2E-09 74.3 14.4 156 212-399 45-212 (234)
107 PF14516 AAA_35: AAA-like doma 98.0 0.00089 1.9E-08 71.0 22.3 202 184-402 10-246 (331)
108 PRK07764 DNA polymerase III su 98.0 0.0001 2.2E-09 86.4 16.4 193 185-393 15-219 (824)
109 PF12799 LRR_4: Leucine Rich r 98.0 3.9E-06 8.4E-11 59.2 2.8 40 621-661 1-40 (44)
110 KOG2227 Pre-initiation complex 98.0 0.00018 3.9E-09 75.6 16.0 178 183-363 148-339 (529)
111 PRK14950 DNA polymerase III su 98.0 7.6E-05 1.7E-09 85.3 14.6 198 185-397 16-223 (585)
112 PF00308 Bac_DnaA: Bacterial d 98.0 8.8E-05 1.9E-09 73.5 13.1 164 211-397 33-210 (219)
113 PRK14959 DNA polymerase III su 98.0 0.00016 3.5E-09 81.1 16.5 199 185-399 16-225 (624)
114 KOG0531 Protein phosphatase 1, 98.0 1.6E-06 3.4E-11 95.5 0.6 106 563-679 90-197 (414)
115 PRK14952 DNA polymerase III su 98.0 0.00021 4.7E-09 80.4 17.4 197 185-397 13-222 (584)
116 PRK14087 dnaA chromosomal repl 98.0 0.00017 3.7E-09 79.4 15.9 169 212-397 141-321 (450)
117 KOG1859 Leucine-rich repeat pr 98.0 2.2E-07 4.7E-12 101.2 -6.7 62 622-686 165-226 (1096)
118 TIGR00767 rho transcription te 98.0 1.7E-05 3.6E-10 83.5 7.3 90 213-303 169-266 (415)
119 PRK07133 DNA polymerase III su 97.9 0.00025 5.4E-09 80.9 17.1 193 185-394 18-218 (725)
120 TIGR02639 ClpA ATP-dependent C 97.9 6.9E-05 1.5E-09 88.2 13.1 156 185-362 182-358 (731)
121 PRK14953 DNA polymerase III su 97.9 0.00042 9.1E-09 76.9 18.3 184 185-396 16-221 (486)
122 PF05621 TniB: Bacterial TniB 97.9 0.00024 5.3E-09 71.9 14.9 200 191-395 43-261 (302)
123 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00011 2.4E-09 87.1 14.4 155 185-361 187-362 (852)
124 PHA02544 44 clamp loader, smal 97.9 0.00031 6.8E-09 74.5 16.5 147 185-359 21-170 (316)
125 PRK14954 DNA polymerase III su 97.9 0.00029 6.4E-09 79.9 16.9 198 185-391 16-224 (620)
126 TIGR02881 spore_V_K stage V sp 97.9 0.00017 3.7E-09 74.0 13.6 161 186-363 7-192 (261)
127 PF05673 DUF815: Protein of un 97.9 0.00035 7.6E-09 68.5 14.8 127 181-335 23-154 (249)
128 CHL00181 cbbX CbbX; Provisiona 97.9 0.00064 1.4E-08 70.3 17.6 134 213-363 60-210 (287)
129 PRK08451 DNA polymerase III su 97.9 0.00055 1.2E-08 76.0 17.6 181 185-396 14-219 (535)
130 KOG0989 Replication factor C, 97.9 0.00013 2.8E-09 72.6 11.3 186 185-392 36-227 (346)
131 PRK03992 proteasome-activating 97.9 0.00013 2.8E-09 79.1 12.4 179 184-388 130-336 (389)
132 PRK14971 DNA polymerase III su 97.8 0.00046 1E-08 78.8 17.2 178 185-394 17-221 (614)
133 PRK06305 DNA polymerase III su 97.8 0.00049 1.1E-08 75.9 16.8 181 185-391 17-218 (451)
134 PRK06620 hypothetical protein; 97.8 0.00014 3E-09 71.8 11.0 137 213-394 45-188 (214)
135 COG2255 RuvB Holliday junction 97.8 0.00047 1E-08 68.0 14.2 179 185-397 26-225 (332)
136 PRK14948 DNA polymerase III su 97.8 0.00057 1.2E-08 78.0 17.2 198 185-396 16-223 (620)
137 PRK05707 DNA polymerase III su 97.8 0.0005 1.1E-08 72.3 15.2 97 291-395 105-203 (328)
138 CHL00095 clpC Clp protease ATP 97.8 0.00015 3.4E-09 86.3 12.6 155 185-360 179-352 (821)
139 KOG2543 Origin recognition com 97.8 0.00016 3.4E-09 74.2 10.5 167 184-361 5-192 (438)
140 KOG4579 Leucine-rich repeat (L 97.8 3.4E-06 7.3E-11 73.4 -1.3 90 567-664 52-142 (177)
141 TIGR02880 cbbX_cfxQ probable R 97.8 0.00041 8.9E-09 71.8 13.8 132 214-362 60-208 (284)
142 PRK14965 DNA polymerase III su 97.7 0.00077 1.7E-08 76.8 16.8 195 185-395 16-221 (576)
143 PRK05563 DNA polymerase III su 97.7 0.0011 2.4E-08 75.1 18.0 193 185-393 16-218 (559)
144 TIGR00362 DnaA chromosomal rep 97.7 0.00061 1.3E-08 74.8 15.4 159 212-393 136-308 (405)
145 PRK11331 5-methylcytosine-spec 97.7 0.00015 3.3E-09 77.8 10.1 109 185-305 175-285 (459)
146 PRK06647 DNA polymerase III su 97.7 0.0013 2.7E-08 74.4 18.0 189 185-395 16-220 (563)
147 PRK12422 chromosomal replicati 97.7 0.0011 2.4E-08 72.8 17.0 155 212-389 141-307 (445)
148 PRK14088 dnaA chromosomal repl 97.7 0.00044 9.5E-09 76.1 13.8 160 212-393 130-303 (440)
149 PRK07399 DNA polymerase III su 97.7 0.0011 2.4E-08 69.4 15.8 199 185-396 4-222 (314)
150 KOG1859 Leucine-rich repeat pr 97.7 1.3E-06 2.7E-11 95.5 -6.5 79 597-679 186-265 (1096)
151 PRK00149 dnaA chromosomal repl 97.6 0.0011 2.3E-08 73.8 15.8 159 212-393 148-320 (450)
152 PRK14086 dnaA chromosomal repl 97.6 0.00083 1.8E-08 75.2 14.3 158 213-393 315-486 (617)
153 PRK11034 clpA ATP-dependent Cl 97.6 0.00016 3.5E-09 84.1 9.1 157 185-362 186-362 (758)
154 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00067 1.5E-08 81.2 14.5 157 185-362 173-349 (852)
155 PRK08116 hypothetical protein; 97.6 0.00028 6E-09 72.2 8.9 104 213-332 115-221 (268)
156 PF00004 AAA: ATPase family as 97.5 0.00014 3.1E-09 65.8 6.0 21 215-235 1-21 (132)
157 PRK10536 hypothetical protein; 97.5 0.0016 3.5E-08 64.7 13.5 136 184-332 54-213 (262)
158 PRK08769 DNA polymerase III su 97.5 0.0024 5.2E-08 66.6 15.3 96 291-396 112-209 (319)
159 COG0593 DnaA ATPase involved i 97.5 0.0013 2.8E-08 70.0 13.4 135 211-365 112-260 (408)
160 KOG3665 ZYG-1-like serine/thre 97.5 6.9E-05 1.5E-09 86.3 4.3 106 621-729 122-231 (699)
161 PRK10865 protein disaggregatio 97.5 0.0015 3.3E-08 78.0 15.4 45 185-235 178-222 (857)
162 KOG3665 ZYG-1-like serine/thre 97.5 9.1E-05 2E-09 85.3 4.3 107 566-679 146-261 (699)
163 TIGR00763 lon ATP-dependent pr 97.4 0.0095 2E-07 70.8 20.9 51 185-235 320-370 (775)
164 PRK08058 DNA polymerase III su 97.4 0.0032 6.9E-08 66.7 15.2 149 186-360 6-180 (329)
165 KOG1644 U2-associated snRNP A' 97.4 0.00018 4E-09 67.2 4.8 105 596-703 40-151 (233)
166 smart00382 AAA ATPases associa 97.4 0.00071 1.5E-08 61.9 8.9 87 213-304 3-90 (148)
167 PRK15386 type III secretion pr 97.4 0.00018 4E-09 76.2 5.2 62 596-662 50-112 (426)
168 TIGR03689 pup_AAA proteasome A 97.4 0.002 4.4E-08 71.2 13.3 167 185-362 182-378 (512)
169 PTZ00454 26S protease regulato 97.4 0.0037 7.9E-08 67.6 15.0 158 184-362 144-329 (398)
170 PTZ00361 26 proteosome regulat 97.4 0.00098 2.1E-08 72.5 10.3 158 185-363 183-368 (438)
171 PF13177 DNA_pol3_delta2: DNA 97.4 0.0021 4.6E-08 60.4 11.4 139 189-350 1-162 (162)
172 TIGR00602 rad24 checkpoint pro 97.3 0.0011 2.5E-08 75.1 11.0 51 184-235 83-133 (637)
173 PRK06871 DNA polymerase III su 97.3 0.01 2.2E-07 62.0 17.2 94 290-392 105-200 (325)
174 PRK15386 type III secretion pr 97.3 0.00023 4.9E-09 75.5 5.0 70 617-691 48-117 (426)
175 COG3267 ExeA Type II secretory 97.3 0.01 2.2E-07 58.2 15.8 181 212-397 51-247 (269)
176 PRK10787 DNA-binding ATP-depen 97.3 0.0089 1.9E-07 70.4 18.5 166 184-362 321-506 (784)
177 KOG2120 SCF ubiquitin ligase, 97.3 1.1E-05 2.3E-10 79.5 -4.9 155 564-727 206-372 (419)
178 PRK06090 DNA polymerase III su 97.3 0.011 2.4E-07 61.6 16.8 93 291-395 107-201 (319)
179 CHL00176 ftsH cell division pr 97.3 0.0031 6.7E-08 72.2 13.5 178 185-388 183-387 (638)
180 KOG2120 SCF ubiquitin ligase, 97.3 1.7E-05 3.7E-10 78.1 -4.1 155 569-730 186-350 (419)
181 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0088 1.9E-07 61.3 15.4 55 192-259 9-63 (262)
182 KOG2004 Mitochondrial ATP-depe 97.2 0.01 2.2E-07 66.0 16.2 105 184-301 410-514 (906)
183 PRK07993 DNA polymerase III su 97.2 0.013 2.9E-07 61.9 16.8 182 192-395 9-204 (334)
184 KOG0991 Replication factor C, 97.2 0.0033 7.2E-08 60.1 10.8 44 185-234 27-70 (333)
185 TIGR01241 FtsH_fam ATP-depende 97.2 0.0044 9.6E-08 69.8 14.0 178 185-388 55-259 (495)
186 COG0466 Lon ATP-dependent Lon 97.2 0.0059 1.3E-07 68.1 14.1 166 184-362 322-508 (782)
187 KOG0741 AAA+-type ATPase [Post 97.1 0.014 3.1E-07 62.5 15.8 149 210-385 536-704 (744)
188 KOG2739 Leucine-rich acidic nu 97.1 0.00018 3.9E-09 70.3 1.7 104 596-703 41-154 (260)
189 PF04665 Pox_A32: Poxvirus A32 97.1 0.00088 1.9E-08 66.3 6.4 36 213-250 14-49 (241)
190 PRK08118 topology modulation p 97.1 0.00022 4.7E-09 67.5 2.0 34 214-247 3-37 (167)
191 COG1373 Predicted ATPase (AAA+ 97.1 0.0056 1.2E-07 66.5 13.1 226 214-501 39-270 (398)
192 COG2607 Predicted ATPase (AAA+ 97.1 0.0022 4.7E-08 61.8 8.5 123 182-332 57-183 (287)
193 PRK06964 DNA polymerase III su 97.1 0.017 3.7E-07 60.9 15.6 94 291-396 131-226 (342)
194 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00056 1.2E-08 71.5 4.5 50 186-235 52-101 (361)
195 PRK08181 transposase; Validate 97.1 0.00071 1.5E-08 68.8 5.1 101 213-332 107-209 (269)
196 TIGR02639 ClpA ATP-dependent C 97.0 0.0046 9.9E-08 73.0 12.5 122 185-318 454-579 (731)
197 PF10443 RNA12: RNA12 protein; 97.0 0.019 4.1E-07 61.1 15.4 209 190-414 1-298 (431)
198 PRK08939 primosomal protein Dn 97.0 0.0025 5.4E-08 66.4 8.7 123 189-332 135-261 (306)
199 PF01695 IstB_IS21: IstB-like 97.0 0.00062 1.3E-08 65.0 3.9 101 213-332 48-150 (178)
200 PRK13531 regulatory ATPase Rav 97.0 0.0014 3E-08 71.2 6.8 41 186-234 21-61 (498)
201 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0018 3.9E-08 77.0 8.2 138 185-331 566-718 (852)
202 KOG1909 Ran GTPase-activating 97.0 0.00019 4.1E-09 72.6 -0.1 177 596-774 90-310 (382)
203 KOG1909 Ran GTPase-activating 96.9 0.00027 5.9E-09 71.5 0.8 204 563-775 25-283 (382)
204 PRK09361 radB DNA repair and r 96.9 0.0042 9.1E-08 62.2 9.3 46 211-259 22-67 (225)
205 PRK10865 protein disaggregatio 96.9 0.0071 1.5E-07 72.3 12.2 137 185-331 568-720 (857)
206 PRK09183 transposase/IS protei 96.9 0.0027 5.9E-08 64.7 7.5 22 213-234 103-124 (259)
207 KOG2123 Uncharacterized conser 96.9 0.00011 2.4E-09 71.9 -2.5 78 596-674 39-123 (388)
208 PRK06526 transposase; Provisio 96.8 0.0018 3.9E-08 65.6 5.5 23 213-235 99-121 (254)
209 PRK12608 transcription termina 96.8 0.0059 1.3E-07 64.2 9.4 102 193-301 119-229 (380)
210 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0047 1E-07 62.3 8.6 90 211-301 18-124 (235)
211 PRK07952 DNA replication prote 96.8 0.0054 1.2E-07 61.5 8.8 104 212-332 99-205 (244)
212 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0063 1.4E-07 73.0 10.9 138 185-331 565-717 (852)
213 PRK06921 hypothetical protein; 96.8 0.0042 9.1E-08 63.5 8.1 37 212-250 117-154 (266)
214 KOG0744 AAA+-type ATPase [Post 96.8 0.015 3.3E-07 58.5 11.5 79 212-301 177-259 (423)
215 COG2812 DnaX DNA polymerase II 96.8 0.0046 9.9E-08 68.0 8.7 190 185-390 16-215 (515)
216 PRK12377 putative replication 96.7 0.0046 9.9E-08 62.2 7.9 102 213-332 102-206 (248)
217 PF07728 AAA_5: AAA domain (dy 96.7 0.00053 1.1E-08 62.9 1.1 85 215-313 2-86 (139)
218 KOG0733 Nuclear AAA ATPase (VC 96.7 0.023 4.9E-07 62.2 13.3 97 185-302 190-292 (802)
219 TIGR02237 recomb_radB DNA repa 96.7 0.0059 1.3E-07 60.4 8.4 49 210-261 10-58 (209)
220 PRK06835 DNA replication prote 96.7 0.0018 3.8E-08 68.1 4.5 103 213-332 184-289 (329)
221 PRK07261 topology modulation p 96.7 0.0045 9.9E-08 58.8 7.0 65 214-302 2-67 (171)
222 COG0542 clpA ATP-binding subun 96.7 0.0038 8.2E-08 71.5 7.4 134 185-331 491-643 (786)
223 COG0470 HolB ATPase involved i 96.6 0.011 2.5E-07 62.8 10.8 143 186-349 2-168 (325)
224 KOG1514 Origin recognition com 96.6 0.097 2.1E-06 58.5 17.6 203 186-395 397-621 (767)
225 PRK11889 flhF flagellar biosyn 96.6 0.013 2.9E-07 61.8 10.6 89 211-303 240-331 (436)
226 PRK08699 DNA polymerase III su 96.6 0.035 7.6E-07 58.5 13.9 71 291-361 112-184 (325)
227 CHL00095 clpC Clp protease ATP 96.6 0.0068 1.5E-07 72.5 9.3 138 185-332 509-662 (821)
228 PRK04296 thymidine kinase; Pro 96.6 0.0035 7.6E-08 60.7 5.7 114 213-333 3-117 (190)
229 PF07693 KAP_NTPase: KAP famil 96.6 0.067 1.4E-06 56.9 15.9 42 192-236 3-44 (325)
230 KOG2982 Uncharacterized conser 96.6 0.0006 1.3E-08 67.4 0.1 59 596-654 95-156 (418)
231 PF13207 AAA_17: AAA domain; P 96.5 0.0017 3.8E-08 57.7 3.0 21 214-234 1-21 (121)
232 KOG2123 Uncharacterized conser 96.5 0.00026 5.6E-09 69.3 -2.7 102 596-700 17-125 (388)
233 COG1222 RPT1 ATP-dependent 26S 96.5 0.04 8.7E-07 56.6 12.6 178 185-389 151-357 (406)
234 CHL00195 ycf46 Ycf46; Provisio 96.5 0.012 2.5E-07 65.3 9.7 181 185-389 228-429 (489)
235 KOG2982 Uncharacterized conser 96.5 0.0027 5.9E-08 63.0 4.2 36 597-632 120-157 (418)
236 COG1223 Predicted ATPase (AAA+ 96.5 0.019 4.1E-07 56.1 9.6 157 185-362 121-297 (368)
237 TIGR02902 spore_lonB ATP-depen 96.5 0.01 2.2E-07 67.1 9.3 43 186-234 66-108 (531)
238 PF00560 LRR_1: Leucine Rich R 96.5 0.0014 2.9E-08 38.4 1.2 20 623-642 2-21 (22)
239 PRK05541 adenylylsulfate kinas 96.5 0.0056 1.2E-07 58.6 6.2 36 211-248 6-41 (176)
240 COG0542 clpA ATP-binding subun 96.5 0.0086 1.9E-07 68.7 8.5 154 185-361 170-345 (786)
241 cd01393 recA_like RecA is a b 96.4 0.024 5.2E-07 56.8 10.9 89 211-302 18-124 (226)
242 PRK06696 uridine kinase; Valid 96.4 0.0039 8.5E-08 62.2 5.1 43 189-234 2-44 (223)
243 cd01133 F1-ATPase_beta F1 ATP 96.4 0.0096 2.1E-07 60.2 7.8 87 213-301 70-172 (274)
244 PF00448 SRP54: SRP54-type pro 96.4 0.012 2.5E-07 57.2 8.1 89 212-302 1-93 (196)
245 PF02562 PhoH: PhoH-like prote 96.4 0.011 2.3E-07 57.3 7.8 129 191-332 6-156 (205)
246 cd00983 recA RecA is a bacter 96.3 0.0076 1.6E-07 62.7 6.7 85 210-301 53-142 (325)
247 TIGR01243 CDC48 AAA family ATP 96.3 0.045 9.8E-07 64.9 14.1 180 184-389 452-657 (733)
248 KOG0733 Nuclear AAA ATPase (VC 96.3 0.041 8.9E-07 60.3 12.0 155 212-389 545-718 (802)
249 KOG1644 U2-associated snRNP A' 96.3 0.0051 1.1E-07 57.8 4.6 87 592-679 58-151 (233)
250 PRK15455 PrkA family serine pr 96.3 0.0028 6.1E-08 69.7 3.4 49 186-234 77-125 (644)
251 cd01394 radB RadB. The archaea 96.3 0.02 4.4E-07 56.9 9.4 43 211-255 18-60 (218)
252 TIGR01243 CDC48 AAA family ATP 96.3 0.026 5.6E-07 67.0 11.5 180 185-390 178-382 (733)
253 PF00158 Sigma54_activat: Sigm 96.2 0.0095 2.1E-07 56.2 6.1 45 187-235 1-45 (168)
254 TIGR02012 tigrfam_recA protein 96.2 0.012 2.6E-07 61.3 7.2 86 210-302 53-143 (321)
255 PF08423 Rad51: Rad51; InterP 96.2 0.013 2.8E-07 59.5 7.3 55 212-267 38-96 (256)
256 TIGR03499 FlhF flagellar biosy 96.2 0.018 3.9E-07 59.5 8.4 87 211-301 193-281 (282)
257 PRK04132 replication factor C 96.2 0.093 2E-06 61.7 15.0 157 220-397 574-733 (846)
258 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.017 3.6E-07 53.5 7.2 117 213-332 3-138 (159)
259 COG1484 DnaC DNA replication p 96.2 0.01 2.3E-07 60.1 6.4 81 212-310 105-185 (254)
260 KOG2228 Origin recognition com 96.1 0.047 1E-06 55.6 10.5 172 186-362 25-219 (408)
261 PLN00020 ribulose bisphosphate 96.1 0.012 2.7E-07 61.2 6.5 26 210-235 146-171 (413)
262 PRK11034 clpA ATP-dependent Cl 96.1 0.017 3.7E-07 67.5 8.4 120 186-317 459-582 (758)
263 PF14532 Sigma54_activ_2: Sigm 96.1 0.0051 1.1E-07 56.2 3.3 108 188-332 1-110 (138)
264 PTZ00494 tuzin-like protein; P 96.0 0.53 1.1E-05 50.2 18.0 168 182-361 368-543 (664)
265 PRK09354 recA recombinase A; P 96.0 0.018 4E-07 60.4 7.4 86 210-302 58-148 (349)
266 PHA02244 ATPase-like protein 96.0 0.061 1.3E-06 56.6 11.1 22 214-235 121-142 (383)
267 cd01120 RecA-like_NTPases RecA 96.0 0.03 6.5E-07 52.5 8.4 40 214-255 1-40 (165)
268 COG2884 FtsE Predicted ATPase 96.0 0.055 1.2E-06 50.6 9.4 62 278-339 141-204 (223)
269 PRK08233 hypothetical protein; 95.9 0.019 4.1E-07 55.2 6.9 24 212-235 3-26 (182)
270 COG4608 AppF ABC-type oligopep 95.9 0.025 5.4E-07 56.4 7.7 124 213-339 40-177 (268)
271 PF05659 RPW8: Arabidopsis bro 95.9 0.13 2.8E-06 47.0 11.7 79 4-86 6-85 (147)
272 COG0572 Udk Uridine kinase [Nu 95.9 0.017 3.7E-07 55.9 6.3 79 210-293 6-85 (218)
273 PRK13695 putative NTPase; Prov 95.9 0.0079 1.7E-07 57.4 4.0 22 214-235 2-23 (174)
274 KOG2739 Leucine-rich acidic nu 95.9 0.0066 1.4E-07 59.6 3.3 83 619-704 41-128 (260)
275 KOG0731 AAA+-type ATPase conta 95.9 0.11 2.3E-06 59.6 13.3 182 185-392 311-521 (774)
276 COG1618 Predicted nucleotide k 95.8 0.008 1.7E-07 54.4 3.4 23 213-235 6-28 (179)
277 KOG1969 DNA replication checkp 95.8 0.021 4.5E-07 63.8 7.2 102 185-305 271-400 (877)
278 COG0563 Adk Adenylate kinase a 95.8 0.016 3.4E-07 55.2 5.6 22 214-235 2-23 (178)
279 KOG0730 AAA+-type ATPase [Post 95.8 0.13 2.8E-06 57.2 13.2 161 183-364 432-617 (693)
280 TIGR02239 recomb_RAD51 DNA rep 95.8 0.04 8.6E-07 57.8 9.1 56 211-267 95-154 (316)
281 KOG0734 AAA+-type ATPase conta 95.8 0.036 7.8E-07 59.6 8.5 52 185-236 304-361 (752)
282 TIGR02238 recomb_DMC1 meiotic 95.8 0.028 6.1E-07 58.8 7.8 58 211-269 95-156 (313)
283 KOG0735 AAA+-type ATPase [Post 95.7 0.019 4.2E-07 63.7 6.5 73 211-302 430-504 (952)
284 cd03214 ABC_Iron-Siderophores_ 95.7 0.075 1.6E-06 51.0 10.0 120 213-335 26-161 (180)
285 TIGR02974 phageshock_pspF psp 95.7 0.071 1.5E-06 56.4 10.6 45 187-235 1-45 (329)
286 cd03247 ABCC_cytochrome_bd The 95.7 0.03 6.5E-07 53.7 7.1 23 213-235 29-51 (178)
287 PRK14722 flhF flagellar biosyn 95.7 0.033 7.2E-07 59.2 7.9 89 212-303 137-226 (374)
288 PLN03187 meiotic recombination 95.7 0.025 5.5E-07 59.6 6.9 58 211-269 125-186 (344)
289 PF00560 LRR_1: Leucine Rich R 95.6 0.0055 1.2E-07 35.9 1.0 22 599-620 1-22 (22)
290 KOG0473 Leucine-rich repeat pr 95.6 0.00089 1.9E-08 63.9 -3.8 86 594-680 38-123 (326)
291 TIGR02236 recomb_radA DNA repa 95.5 0.044 9.6E-07 57.7 8.4 56 211-267 94-153 (310)
292 KOG1051 Chaperone HSP104 and r 95.5 0.055 1.2E-06 63.2 9.5 118 186-316 563-684 (898)
293 TIGR00959 ffh signal recogniti 95.5 0.067 1.5E-06 58.3 9.7 25 210-234 97-121 (428)
294 COG0468 RecA RecA/RadA recombi 95.5 0.061 1.3E-06 54.7 8.8 89 210-301 58-150 (279)
295 PRK04301 radA DNA repair and r 95.5 0.043 9.3E-07 58.0 8.2 56 211-267 101-160 (317)
296 COG1121 ZnuC ABC-type Mn/Zn tr 95.5 0.072 1.6E-06 53.1 9.1 121 213-335 31-202 (254)
297 PRK07667 uridine kinase; Provi 95.5 0.018 4E-07 55.9 4.9 37 194-234 3-39 (193)
298 PF13604 AAA_30: AAA domain; P 95.5 0.028 6.2E-07 54.7 6.2 107 213-332 19-131 (196)
299 PLN03186 DNA repair protein RA 95.5 0.08 1.7E-06 55.9 9.9 57 211-268 122-182 (342)
300 TIGR01817 nifA Nif-specific re 95.5 0.095 2E-06 59.8 11.3 49 183-235 194-242 (534)
301 PRK00771 signal recognition pa 95.4 0.077 1.7E-06 58.0 9.9 89 210-302 93-185 (437)
302 PRK06067 flagellar accessory p 95.4 0.053 1.2E-06 54.6 8.3 88 210-302 23-130 (234)
303 cd01131 PilT Pilus retraction 95.4 0.016 3.5E-07 56.5 4.3 110 213-335 2-112 (198)
304 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.096 2.1E-06 48.1 9.2 104 213-336 27-131 (144)
305 cd03216 ABC_Carb_Monos_I This 95.4 0.05 1.1E-06 51.3 7.4 115 213-335 27-145 (163)
306 COG0464 SpoVK ATPases of the A 95.4 0.15 3.3E-06 57.7 12.7 158 185-363 242-424 (494)
307 PRK05439 pantothenate kinase; 95.4 0.088 1.9E-06 54.6 9.7 82 209-293 83-166 (311)
308 cd03238 ABC_UvrA The excision 95.4 0.084 1.8E-06 50.2 8.9 114 213-336 22-153 (176)
309 PRK12727 flagellar biosynthesi 95.4 0.071 1.5E-06 58.8 9.3 88 211-302 349-438 (559)
310 PF08298 AAA_PrkA: PrkA AAA do 95.3 0.02 4.3E-07 59.5 4.7 50 185-234 61-110 (358)
311 TIGR01650 PD_CobS cobaltochela 95.3 0.41 9E-06 49.8 14.3 40 187-234 47-86 (327)
312 PF13238 AAA_18: AAA domain; P 95.3 0.011 2.5E-07 53.0 2.7 21 215-235 1-21 (129)
313 cd03228 ABCC_MRP_Like The MRP 95.3 0.074 1.6E-06 50.5 8.4 23 213-235 29-51 (171)
314 PF12061 DUF3542: Protein of u 95.3 0.063 1.4E-06 53.8 7.8 74 13-86 298-372 (402)
315 cd02025 PanK Pantothenate kina 95.3 0.062 1.3E-06 53.3 8.0 21 214-234 1-21 (220)
316 PF12775 AAA_7: P-loop contain 95.3 0.021 4.5E-07 58.6 4.7 33 195-234 23-55 (272)
317 PTZ00301 uridine kinase; Provi 95.3 0.022 4.8E-07 55.8 4.7 23 212-234 3-25 (210)
318 PF00485 PRK: Phosphoribulokin 95.3 0.012 2.7E-07 57.2 3.0 81 214-296 1-87 (194)
319 PRK05703 flhF flagellar biosyn 95.3 0.072 1.6E-06 58.3 9.1 88 212-302 221-309 (424)
320 PRK05480 uridine/cytidine kina 95.3 0.015 3.3E-07 57.3 3.6 25 211-235 5-29 (209)
321 KOG2035 Replication factor C, 95.3 0.15 3.2E-06 50.6 10.1 210 187-419 15-262 (351)
322 PF13671 AAA_33: AAA domain; P 95.3 0.014 3.1E-07 53.5 3.2 21 214-234 1-21 (143)
323 TIGR00554 panK_bact pantothena 95.3 0.082 1.8E-06 54.4 8.9 80 210-292 60-141 (290)
324 PRK12724 flagellar biosynthesi 95.2 0.051 1.1E-06 58.3 7.5 24 211-234 222-245 (432)
325 PF01583 APS_kinase: Adenylyls 95.2 0.024 5.3E-07 52.2 4.5 23 212-234 2-24 (156)
326 cd02019 NK Nucleoside/nucleoti 95.2 0.014 3E-07 45.9 2.4 22 214-235 1-22 (69)
327 PRK11608 pspF phage shock prot 95.2 0.05 1.1E-06 57.6 7.4 45 186-234 7-51 (326)
328 TIGR00235 udk uridine kinase. 95.2 0.017 3.7E-07 56.9 3.5 24 211-234 5-28 (207)
329 PRK10733 hflB ATP-dependent me 95.1 0.13 2.8E-06 59.7 11.2 157 185-362 152-335 (644)
330 PRK07132 DNA polymerase III su 95.1 1.1 2.4E-05 46.5 16.8 156 212-394 18-184 (299)
331 PTZ00035 Rad51 protein; Provis 95.1 0.16 3.5E-06 53.8 10.9 57 211-268 117-177 (337)
332 PRK10867 signal recognition pa 95.1 0.067 1.5E-06 58.3 8.1 24 211-234 99-122 (433)
333 cd03222 ABC_RNaseL_inhibitor T 95.1 0.11 2.4E-06 49.5 8.6 22 213-234 26-47 (177)
334 PF00154 RecA: recA bacterial 95.1 0.089 1.9E-06 54.7 8.6 85 210-301 51-140 (322)
335 PRK09270 nucleoside triphospha 95.1 0.1 2.2E-06 52.3 8.9 25 210-234 31-55 (229)
336 KOG0473 Leucine-rich repeat pr 95.1 0.0012 2.7E-08 63.0 -4.5 89 562-657 36-124 (326)
337 PRK14974 cell division protein 95.1 0.13 2.7E-06 54.3 9.8 91 211-304 139-234 (336)
338 COG1136 SalX ABC-type antimicr 95.0 0.17 3.6E-06 49.7 9.8 61 279-339 147-210 (226)
339 cd03115 SRP The signal recogni 95.0 0.072 1.6E-06 50.7 7.4 21 214-234 2-22 (173)
340 cd03223 ABCD_peroxisomal_ALDP 95.0 0.16 3.4E-06 48.0 9.6 23 213-235 28-50 (166)
341 KOG0736 Peroxisome assembly fa 95.0 0.15 3.2E-06 57.7 10.4 101 182-303 669-775 (953)
342 cd01122 GP4d_helicase GP4d_hel 95.0 0.19 4.1E-06 51.9 11.0 52 213-267 31-82 (271)
343 PRK06762 hypothetical protein; 95.0 0.019 4.1E-07 54.3 3.2 23 212-234 2-24 (166)
344 PRK15429 formate hydrogenlyase 95.0 0.085 1.8E-06 62.2 9.2 47 185-235 376-422 (686)
345 cd01121 Sms Sms (bacterial rad 95.0 0.15 3.4E-06 54.6 10.3 83 211-301 81-167 (372)
346 COG5238 RNA1 Ran GTPase-activa 95.0 0.0084 1.8E-07 58.8 0.6 38 642-679 90-131 (388)
347 TIGR00064 ftsY signal recognit 95.0 0.13 2.8E-06 52.8 9.4 90 211-303 71-165 (272)
348 PRK06002 fliI flagellum-specif 94.9 0.062 1.3E-06 58.3 7.1 86 213-301 166-263 (450)
349 TIGR03877 thermo_KaiC_1 KaiC d 94.9 0.18 3.9E-06 50.8 10.0 48 211-262 20-67 (237)
350 PRK06547 hypothetical protein; 94.8 0.025 5.5E-07 53.6 3.6 26 210-235 13-38 (172)
351 TIGR00708 cobA cob(I)alamin ad 94.8 0.13 2.7E-06 48.3 8.0 117 213-332 6-140 (173)
352 COG1875 NYN ribonuclease and A 94.8 0.22 4.7E-06 51.5 10.2 133 188-332 227-388 (436)
353 PF00910 RNA_helicase: RNA hel 94.8 0.016 3.5E-07 50.2 1.9 21 215-235 1-21 (107)
354 COG1126 GlnQ ABC-type polar am 94.8 0.24 5.3E-06 47.6 9.8 22 213-234 29-50 (240)
355 cd03246 ABCC_Protease_Secretio 94.8 0.1 2.2E-06 49.7 7.6 22 213-234 29-50 (173)
356 COG0396 sufC Cysteine desulfur 94.8 0.22 4.7E-06 48.3 9.5 65 280-344 150-216 (251)
357 cd01135 V_A-ATPase_B V/A-type 94.7 0.11 2.4E-06 52.6 7.9 89 213-301 70-175 (276)
358 PRK05022 anaerobic nitric oxid 94.7 0.097 2.1E-06 59.2 8.5 48 184-235 186-233 (509)
359 KOG0728 26S proteasome regulat 94.7 0.63 1.4E-05 45.4 12.5 155 187-362 148-331 (404)
360 PRK12726 flagellar biosynthesi 94.7 0.15 3.2E-06 54.0 9.0 90 211-303 205-296 (407)
361 PRK12723 flagellar biosynthesi 94.7 0.17 3.7E-06 54.4 9.8 89 211-303 173-265 (388)
362 TIGR00382 clpX endopeptidase C 94.7 0.15 3.2E-06 55.3 9.3 51 184-234 76-138 (413)
363 TIGR01360 aden_kin_iso1 adenyl 94.7 0.028 6E-07 54.4 3.5 24 211-234 2-25 (188)
364 TIGR00390 hslU ATP-dependent p 94.6 0.1 2.3E-06 55.8 7.8 51 185-235 12-70 (441)
365 COG1102 Cmk Cytidylate kinase 94.6 0.046 9.9E-07 49.7 4.3 22 214-235 2-23 (179)
366 KOG0739 AAA+-type ATPase [Post 94.6 0.58 1.3E-05 46.9 12.2 96 185-302 133-235 (439)
367 PF00006 ATP-synt_ab: ATP synt 94.6 0.073 1.6E-06 52.2 6.2 83 213-301 16-114 (215)
368 PF08433 KTI12: Chromatin asso 94.6 0.069 1.5E-06 54.6 6.2 23 213-235 2-24 (270)
369 PRK03839 putative kinase; Prov 94.6 0.025 5.5E-07 54.3 2.9 22 214-235 2-23 (180)
370 COG1428 Deoxynucleoside kinase 94.5 0.025 5.5E-07 54.0 2.6 25 212-236 4-28 (216)
371 cd03281 ABC_MSH5_euk MutS5 hom 94.5 0.052 1.1E-06 53.6 5.1 23 212-234 29-51 (213)
372 COG2842 Uncharacterized ATPase 94.5 0.84 1.8E-05 46.2 13.4 120 185-318 72-191 (297)
373 PRK04040 adenylate kinase; Pro 94.5 0.029 6.4E-07 54.1 3.1 22 213-234 3-24 (188)
374 PTZ00185 ATPase alpha subunit; 94.5 0.15 3.2E-06 55.8 8.6 88 213-302 190-299 (574)
375 cd03230 ABC_DR_subfamily_A Thi 94.5 0.2 4.4E-06 47.7 8.8 23 213-235 27-49 (173)
376 KOG0729 26S proteasome regulat 94.4 0.21 4.6E-06 49.0 8.7 55 186-242 178-239 (435)
377 PF03308 ArgK: ArgK protein; 94.4 0.062 1.3E-06 53.3 5.2 63 193-259 14-76 (266)
378 TIGR02858 spore_III_AA stage I 94.4 0.2 4.4E-06 51.1 9.1 116 211-336 110-233 (270)
379 PRK06731 flhF flagellar biosyn 94.4 0.24 5.1E-06 50.5 9.5 89 213-304 76-166 (270)
380 cd02028 UMPK_like Uridine mono 94.3 0.075 1.6E-06 50.9 5.5 22 214-235 1-22 (179)
381 PRK09519 recA DNA recombinatio 94.3 0.11 2.4E-06 60.3 7.8 86 210-302 58-148 (790)
382 PRK10751 molybdopterin-guanine 94.3 0.045 9.7E-07 51.5 3.8 25 211-235 5-29 (173)
383 COG0714 MoxR-like ATPases [Gen 94.3 0.092 2E-06 55.8 6.7 63 186-261 25-87 (329)
384 PF01078 Mg_chelatase: Magnesi 94.3 0.073 1.6E-06 51.3 5.3 42 185-234 3-44 (206)
385 PF07726 AAA_3: ATPase family 94.3 0.024 5.3E-07 49.8 1.9 27 215-243 2-28 (131)
386 PRK10923 glnG nitrogen regulat 94.3 0.46 1E-05 53.4 12.7 46 186-235 139-184 (469)
387 PRK05342 clpX ATP-dependent pr 94.3 0.1 2.3E-06 56.7 7.1 50 185-234 71-130 (412)
388 PF06309 Torsin: Torsin; Inte 94.3 0.078 1.7E-06 46.5 4.9 50 186-235 26-76 (127)
389 PTZ00088 adenylate kinase 1; P 94.3 0.047 1E-06 54.3 4.1 20 215-234 9-28 (229)
390 PRK05986 cob(I)alamin adenolsy 94.2 0.12 2.6E-06 49.2 6.5 119 212-332 22-158 (191)
391 PRK00625 shikimate kinase; Pro 94.2 0.032 7E-07 52.9 2.7 21 214-234 2-22 (173)
392 TIGR00150 HI0065_YjeE ATPase, 94.2 0.07 1.5E-06 47.8 4.7 40 192-235 6-45 (133)
393 PF03969 AFG1_ATPase: AFG1-lik 94.2 0.059 1.3E-06 57.5 4.9 102 211-332 61-167 (362)
394 PRK14723 flhF flagellar biosyn 94.1 0.32 6.9E-06 56.5 10.9 87 212-302 185-273 (767)
395 cd02023 UMPK Uridine monophosp 94.1 0.03 6.6E-07 54.7 2.4 21 214-234 1-21 (198)
396 KOG3347 Predicted nucleotide k 94.1 0.063 1.4E-06 48.0 4.0 70 212-292 7-76 (176)
397 PRK14721 flhF flagellar biosyn 94.1 0.26 5.5E-06 53.5 9.6 24 211-234 190-213 (420)
398 PHA00729 NTP-binding motif con 94.1 0.045 9.7E-07 53.7 3.5 24 211-234 16-39 (226)
399 TIGR02322 phosphon_PhnN phosph 94.1 0.038 8.2E-07 53.0 3.0 23 213-235 2-24 (179)
400 PRK00889 adenylylsulfate kinas 94.1 0.05 1.1E-06 51.9 3.8 25 211-235 3-27 (175)
401 PF07724 AAA_2: AAA domain (Cd 94.1 0.044 9.6E-07 51.9 3.3 23 212-234 3-25 (171)
402 TIGR01359 UMP_CMP_kin_fam UMP- 94.1 0.032 7E-07 53.7 2.4 21 214-234 1-21 (183)
403 TIGR01425 SRP54_euk signal rec 94.0 0.26 5.6E-06 53.5 9.4 25 210-234 98-122 (429)
404 PRK05201 hslU ATP-dependent pr 94.0 0.14 3E-06 54.9 7.1 50 185-234 15-72 (443)
405 PRK00131 aroK shikimate kinase 94.0 0.041 8.9E-07 52.4 3.1 23 212-234 4-26 (175)
406 COG1703 ArgK Putative periplas 94.0 0.076 1.6E-06 53.5 4.9 63 196-262 39-101 (323)
407 TIGR03575 selen_PSTK_euk L-ser 94.0 0.14 2.9E-06 54.0 7.0 21 215-235 2-22 (340)
408 COG1066 Sms Predicted ATP-depe 94.0 0.2 4.3E-06 52.8 8.1 97 193-302 78-178 (456)
409 TIGR03522 GldA_ABC_ATP gliding 94.0 0.29 6.3E-06 51.3 9.6 23 213-235 29-51 (301)
410 cd02024 NRK1 Nicotinamide ribo 94.0 0.035 7.5E-07 53.2 2.4 22 214-235 1-22 (187)
411 cd03217 ABC_FeS_Assembly ABC-t 94.0 0.18 4E-06 49.3 7.6 23 213-235 27-49 (200)
412 PF13504 LRR_7: Leucine rich r 93.9 0.033 7.2E-07 30.2 1.3 13 623-635 3-15 (17)
413 TIGR03878 thermo_KaiC_2 KaiC d 93.9 0.19 4.1E-06 51.3 7.8 40 211-252 35-74 (259)
414 KOG1532 GTPase XAB1, interacts 93.9 0.048 1E-06 53.7 3.2 87 209-295 16-119 (366)
415 PRK08149 ATP synthase SpaL; Va 93.9 0.19 4.2E-06 54.5 8.1 85 213-301 152-250 (428)
416 cd02021 GntK Gluconate kinase 93.9 0.039 8.4E-07 51.2 2.5 22 214-235 1-22 (150)
417 cd01125 repA Hexameric Replica 93.9 0.18 3.8E-06 50.9 7.5 21 214-234 3-23 (239)
418 PRK07276 DNA polymerase III su 93.9 2.2 4.7E-05 44.0 15.3 70 290-360 102-173 (290)
419 PRK04328 hypothetical protein; 93.9 0.16 3.4E-06 51.6 7.1 41 211-253 22-62 (249)
420 PRK12597 F0F1 ATP synthase sub 93.9 0.15 3.3E-06 55.8 7.3 88 213-301 144-246 (461)
421 PRK05917 DNA polymerase III su 93.8 1.4 3E-05 45.3 13.8 59 291-349 94-154 (290)
422 cd00227 CPT Chloramphenicol (C 93.8 0.043 9.4E-07 52.4 2.8 22 213-234 3-24 (175)
423 TIGR03263 guanyl_kin guanylate 93.8 0.047 1E-06 52.4 3.1 22 213-234 2-23 (180)
424 PF00625 Guanylate_kin: Guanyl 93.8 0.062 1.3E-06 51.7 3.9 36 212-249 2-37 (183)
425 PRK06995 flhF flagellar biosyn 93.8 0.37 8E-06 53.2 10.2 87 212-302 256-344 (484)
426 PF13306 LRR_5: Leucine rich r 93.8 0.16 3.6E-06 45.4 6.4 76 596-676 33-111 (129)
427 PF13481 AAA_25: AAA domain; P 93.7 0.28 6E-06 47.6 8.4 41 213-253 33-81 (193)
428 PRK10820 DNA-binding transcrip 93.7 0.16 3.5E-06 57.5 7.6 46 185-234 204-249 (520)
429 COG0467 RAD55 RecA-superfamily 93.7 0.082 1.8E-06 54.2 4.7 42 210-253 21-62 (260)
430 PF03193 DUF258: Protein of un 93.7 0.1 2.2E-06 48.4 4.8 35 192-235 24-58 (161)
431 PRK11823 DNA repair protein Ra 93.6 0.34 7.4E-06 53.6 9.7 83 211-301 79-165 (446)
432 TIGR00416 sms DNA repair prote 93.6 0.37 8.1E-06 53.3 10.0 54 193-252 79-132 (454)
433 cd01136 ATPase_flagellum-secre 93.6 0.26 5.6E-06 51.6 8.2 85 213-301 70-168 (326)
434 PRK06217 hypothetical protein; 93.6 0.049 1.1E-06 52.5 2.7 22 214-235 3-24 (183)
435 COG1936 Predicted nucleotide k 93.6 0.056 1.2E-06 49.9 2.8 20 214-233 2-21 (180)
436 PRK14737 gmk guanylate kinase; 93.6 0.071 1.5E-06 51.3 3.8 25 211-235 3-27 (186)
437 COG4618 ArpD ABC-type protease 93.6 0.52 1.1E-05 51.1 10.4 22 213-234 363-384 (580)
438 PF08477 Miro: Miro-like prote 93.5 0.058 1.2E-06 47.6 2.9 22 215-236 2-23 (119)
439 TIGR03498 FliI_clade3 flagella 93.5 0.26 5.6E-06 53.5 8.3 85 213-301 141-239 (418)
440 COG2019 AdkA Archaeal adenylat 93.5 0.064 1.4E-06 49.0 3.1 23 212-234 4-26 (189)
441 PRK03846 adenylylsulfate kinas 93.5 0.067 1.5E-06 52.2 3.6 24 211-234 23-46 (198)
442 PRK13765 ATP-dependent proteas 93.5 0.14 3E-06 58.7 6.5 75 185-269 31-105 (637)
443 PRK08533 flagellar accessory p 93.5 0.33 7.3E-06 48.5 8.6 48 212-263 24-71 (230)
444 cd00267 ABC_ATPase ABC (ATP-bi 93.5 0.19 4E-06 47.0 6.4 118 213-337 26-145 (157)
445 PRK05922 type III secretion sy 93.5 0.24 5.3E-06 53.7 8.0 85 213-301 158-256 (434)
446 PRK08972 fliI flagellum-specif 93.5 0.16 3.4E-06 55.1 6.5 85 213-301 163-261 (444)
447 cd01134 V_A-ATPase_A V/A-type 93.5 0.34 7.4E-06 50.6 8.7 47 213-263 158-205 (369)
448 PRK05973 replicative DNA helic 93.5 0.36 7.7E-06 48.1 8.6 47 212-262 64-110 (237)
449 KOG2170 ATPase of the AAA+ sup 93.5 0.23 5E-06 50.0 7.1 115 186-317 83-203 (344)
450 PF13504 LRR_7: Leucine rich r 93.4 0.059 1.3E-06 29.2 1.7 17 598-614 1-17 (17)
451 TIGR03881 KaiC_arch_4 KaiC dom 93.4 0.28 6.1E-06 49.1 8.0 41 211-253 19-59 (229)
452 TIGR00764 lon_rel lon-related 93.4 0.21 4.6E-06 57.4 7.8 74 185-269 18-92 (608)
453 PRK00300 gmk guanylate kinase; 93.4 0.065 1.4E-06 52.7 3.3 24 212-235 5-28 (205)
454 cd02020 CMPK Cytidine monophos 93.4 0.056 1.2E-06 49.8 2.6 21 214-234 1-21 (147)
455 PRK13949 shikimate kinase; Pro 93.4 0.057 1.2E-06 51.1 2.7 21 214-234 3-23 (169)
456 PRK13947 shikimate kinase; Pro 93.3 0.056 1.2E-06 51.4 2.7 21 214-234 3-23 (171)
457 COG0529 CysC Adenylylsulfate k 93.3 0.08 1.7E-06 48.9 3.4 24 211-234 22-45 (197)
458 PRK10078 ribose 1,5-bisphospho 93.3 0.067 1.5E-06 51.6 3.2 23 213-235 3-25 (186)
459 PRK12339 2-phosphoglycerate ki 93.3 0.073 1.6E-06 51.6 3.4 24 212-235 3-26 (197)
460 TIGR01069 mutS2 MutS2 family p 93.3 0.059 1.3E-06 63.5 3.2 23 212-234 322-344 (771)
461 PRK08927 fliI flagellum-specif 93.3 0.23 5.1E-06 53.9 7.5 85 213-301 159-257 (442)
462 TIGR03305 alt_F1F0_F1_bet alte 93.3 0.18 3.8E-06 54.9 6.6 88 213-301 139-241 (449)
463 cd03282 ABC_MSH4_euk MutS4 hom 93.3 0.13 2.8E-06 50.3 5.1 118 213-339 30-158 (204)
464 PF13245 AAA_19: Part of AAA d 93.3 0.13 2.8E-06 41.2 4.2 21 213-233 11-31 (76)
465 cd00820 PEPCK_HprK Phosphoenol 93.3 0.079 1.7E-06 45.3 3.1 21 213-233 16-36 (107)
466 PRK15453 phosphoribulokinase; 93.3 0.41 8.8E-06 48.6 8.6 24 211-234 4-27 (290)
467 cd00544 CobU Adenosylcobinamid 93.2 0.5 1.1E-05 44.6 8.8 79 215-301 2-82 (169)
468 PLN02348 phosphoribulokinase 93.2 0.1 2.2E-06 55.4 4.5 25 210-234 47-71 (395)
469 COG4181 Predicted ABC-type tra 93.2 0.59 1.3E-05 43.1 8.7 85 255-340 122-215 (228)
470 cd00071 GMPK Guanosine monopho 93.2 0.062 1.4E-06 48.9 2.6 22 214-235 1-22 (137)
471 PRK09280 F0F1 ATP synthase sub 93.2 0.25 5.5E-06 53.9 7.7 88 213-301 145-247 (463)
472 COG1419 FlhF Flagellar GTP-bin 93.2 0.3 6.5E-06 51.8 7.9 88 212-302 203-291 (407)
473 PF03266 NTPase_1: NTPase; In 93.2 0.063 1.4E-06 50.6 2.7 21 215-235 2-22 (168)
474 COG1124 DppF ABC-type dipeptid 93.2 0.073 1.6E-06 52.0 3.1 22 213-234 34-55 (252)
475 PRK14738 gmk guanylate kinase; 93.2 0.094 2E-06 51.5 4.0 25 210-234 11-35 (206)
476 PF03205 MobB: Molybdopterin g 93.1 0.074 1.6E-06 48.5 3.0 39 213-252 1-39 (140)
477 COG4639 Predicted kinase [Gene 93.1 0.092 2E-06 47.5 3.4 23 212-234 2-24 (168)
478 PRK14530 adenylate kinase; Pro 93.1 0.066 1.4E-06 53.1 2.8 22 213-234 4-25 (215)
479 PRK13948 shikimate kinase; Pro 93.1 0.08 1.7E-06 50.6 3.2 24 211-234 9-32 (182)
480 PRK12678 transcription termina 93.1 0.23 5E-06 55.0 7.1 88 213-301 417-512 (672)
481 cd01132 F1_ATPase_alpha F1 ATP 93.1 0.18 4E-06 51.0 5.9 83 213-301 70-170 (274)
482 PRK06793 fliI flagellum-specif 93.0 0.42 9.1E-06 52.0 8.9 87 213-302 157-256 (432)
483 PF10236 DAP3: Mitochondrial r 93.0 1.6 3.4E-05 45.8 13.0 49 343-392 258-306 (309)
484 cd01129 PulE-GspE PulE/GspE Th 93.0 0.22 4.7E-06 51.0 6.4 81 213-304 81-161 (264)
485 PRK09099 type III secretion sy 92.9 0.3 6.4E-06 53.3 7.7 86 213-301 164-262 (441)
486 TIGR01313 therm_gnt_kin carboh 92.9 0.063 1.4E-06 50.5 2.3 20 215-234 1-20 (163)
487 PRK10416 signal recognition pa 92.9 0.36 7.7E-06 50.7 8.0 25 211-235 113-137 (318)
488 PRK06936 type III secretion sy 92.9 0.29 6.2E-06 53.2 7.4 85 213-301 163-261 (439)
489 TIGR00073 hypB hydrogenase acc 92.9 0.087 1.9E-06 51.8 3.3 25 210-234 20-44 (207)
490 PLN02200 adenylate kinase fami 92.9 0.091 2E-06 52.6 3.4 24 211-234 42-65 (234)
491 COG0194 Gmk Guanylate kinase [ 92.8 0.099 2.1E-06 49.0 3.3 24 212-235 4-27 (191)
492 cd00464 SK Shikimate kinase (S 92.8 0.081 1.7E-06 49.2 2.9 20 215-234 2-21 (154)
493 PRK05800 cobU adenosylcobinami 92.8 0.39 8.4E-06 45.4 7.5 81 214-301 3-85 (170)
494 cd02027 APSK Adenosine 5'-phos 92.8 0.077 1.7E-06 49.1 2.6 21 214-234 1-21 (149)
495 PF03215 Rad17: Rad17 cell cyc 92.8 0.11 2.3E-06 58.2 4.2 49 186-235 20-68 (519)
496 cd00984 DnaB_C DnaB helicase C 92.8 0.59 1.3E-05 47.2 9.4 52 212-266 13-64 (242)
497 PRK07721 fliI flagellum-specif 92.8 0.39 8.5E-06 52.6 8.4 24 212-235 158-181 (438)
498 PRK05057 aroK shikimate kinase 92.7 0.087 1.9E-06 50.1 3.0 23 213-235 5-27 (172)
499 PRK14527 adenylate kinase; Pro 92.7 0.099 2.1E-06 50.7 3.4 24 211-234 5-28 (191)
500 TIGR02915 PEP_resp_reg putativ 92.7 0.85 1.8E-05 50.9 11.3 45 186-234 140-184 (445)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-82 Score=726.22 Aligned_cols=658 Identities=29% Similarity=0.450 Sum_probs=517.5
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhCCCCCCCC
Q 040735 26 ELFTRHEKLRADFIKWKGMLEMIQAVLADAEDRQTKDKAVKKWLDNLQNLAYDAEDVLDELETEALRRELLLQEPPAPYQ 105 (779)
Q Consensus 26 ~~~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~~~~~~~~~~~~~~~~~~~ 105 (779)
.++....++++.+..|++.|..++++++||++++.....+..|...+++++|++||+++.|..+....+..+ .
T Consensus 18 ~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~-------~ 90 (889)
T KOG4658|consen 18 RESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAND-------L 90 (889)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------H
Confidence 344555677889999999999999999999999888888999999999999999999999999877654332 0
Q ss_pred CCccccccccccccccccCCCCchhhhHHHHHHHHHHHHHHHHHHHhhccccccccccCCCccccccCCCCCcccCCCCC
Q 040735 106 PSTSTSKFRKIIPTCCTNFSPRSIQFESKMVSKIEEVTARLQSIISTQKDLLTMKNVISDGKSRINVGQRLPTTSLVNEA 185 (779)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~rl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (779)
. .......+.+.. ..+++..+..+..+.+|+..+ .+....++.............+....+..+.....
T Consensus 91 l-~~~~~~~~~~c~---------~~~~~~~~~~~~~~~~rv~~~-l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (889)
T KOG4658|consen 91 L-STRSVERQRLCL---------CGFCSKNVSDSYKYGKRVSKV-LREVESLGSKGVFEVVGESLDPREKVETRPIQSES 159 (889)
T ss_pred h-hhhHHHHHHHhh---------hhhHhHhhhhhHhHHHHHHHH-HHHHHHhccccceecccccccchhhcccCCCCccc
Confidence 0 000001111111 135667777777777777777 55555555444321111001111223344444444
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc-cccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDR-VQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
. ||.+..++++.+.|..++. .+++|+||||+||||||+.++|+.. ++.+|+.++||+||+.++...++.+|+
T Consensus 160 ~-VG~e~~~~kl~~~L~~d~~------~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il 232 (889)
T KOG4658|consen 160 D-VGLETMLEKLWNRLMEDDV------GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTIL 232 (889)
T ss_pred c-ccHHHHHHHHHHHhccCCC------CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHH
Confidence 4 9999999999999987652 8999999999999999999999987 999999999999999999999999999
Q ss_pred HHhhcCCCC-CcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhhHhh-hcccc
Q 040735 265 NSIASDQCT-DKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGVAET-MRAVS 342 (779)
Q Consensus 265 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~-~~~~~ 342 (779)
+.++..... .....++++..+.+.|++|||+|||||||+. .+|+.+..++|....||+|++|||+..|+.. ++...
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~ 310 (889)
T KOG4658|consen 233 ERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY 310 (889)
T ss_pred HHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc
Confidence 999875442 2333478899999999999999999999997 5799999999999899999999999999988 77788
Q ss_pred cccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhhhhcccc--
Q 040735 343 TKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEFVLNANIWDLQ-- 420 (779)
Q Consensus 343 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~-- 420 (779)
.+++..|+.+|||.||++.++.... ...+.++++|++++++|+|+|||++++|+.|+.+.+..+|+.+.+...+...
T Consensus 311 ~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~ 389 (889)
T KOG4658|consen 311 PIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAAD 389 (889)
T ss_pred cccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCC
Confidence 9999999999999999999987643 3334599999999999999999999999999999999999999988765532
Q ss_pred --cCCCCchHHHHHhhcCCChhhHhHhhhhccCCCCCccCHHHHHHHHHHcCCccCCCCCCCHHHHHHHHHHHHhhCccc
Q 040735 421 --EDKCDIVPALRVSYHFLPPQLKQCFAYFSLFPKDYDFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLV 498 (779)
Q Consensus 421 --~~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~~~ll 498 (779)
...+.+.++|.+||+.||++.|.||+|||+||+||.|+++.|+.+|+||||+.+..++.++++.|..|+.+|++++|+
T Consensus 390 ~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll 469 (889)
T KOG4658|consen 390 FSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLL 469 (889)
T ss_pred CCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHH
Confidence 234678899999999999999999999999999999999999999999999998777889999999999999999999
Q ss_pred cccCC--CCCcEEecccHHHHHHHhhc-----cceEEeecccc--cccccccCCceeEEEEEeccccccccccccccccc
Q 040735 499 QQSSK--NASRFVMHDLINDLSRWAAG-----ELYFRIEDTLA--GENRQKFSQSLRHFSYIHGEYDGKKRLKSVSDVER 569 (779)
Q Consensus 499 ~~~~~--~~~~~~~Hdlv~~~a~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~ 569 (779)
+.... +..+|.|||+|||+|.++++ +++..+.+... ..........+|++++.++.... ...-..+++
T Consensus 470 ~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~ 546 (889)
T KOG4658|consen 470 IEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPK 546 (889)
T ss_pred hhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCCCc
Confidence 98763 45789999999999999999 55544443211 11222244678999998875432 333446668
Q ss_pred ceEecccCcccccccccchHhhhhhc-CCCCccEEEecCC-CCCccCccccCCCccceEecccccccccccccccccccc
Q 040735 570 LRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGY-HISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLH 647 (779)
Q Consensus 570 Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~ 647 (779)
|++|.+..+.. -...++..+| .++.|++|||++| .+.++|..|++|.|||||+|+++.++.+|.++++|..|+
T Consensus 547 L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 547 LRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred cceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 99999988642 1244556666 8999999999987 567999999999999999999999999999999999999
Q ss_pred eeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhcccccc
Q 040735 648 TILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQ 720 (779)
Q Consensus 648 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~ 720 (779)
+|++..+..+..+|..+..|++|++|.+.... ...-...++.+.+|++|..+.+...+...+..+..++.|.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLR 693 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHH
Confidence 99999997777777777779999999987654 1111122445555555544444333332333444444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.8e-53 Score=513.55 Aligned_cols=484 Identities=21% Similarity=0.285 Sum_probs=331.5
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEe---CCC-----
Q 040735 182 VNEAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCV---FED----- 253 (779)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~----- 253 (779)
.+...+|||+.+++++..+|.... +++++|+||||||+||||||+++|+ ++..+|+..+|+.. ...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence 345679999999999999885432 4689999999999999999999998 67778988877642 111
Q ss_pred ------CC-HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEE
Q 040735 254 ------FD-VFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIV 326 (779)
Q Consensus 254 ------~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii 326 (779)
+. ...+...++..+.......... ...+++.++++|+||||||||+. .+|+.+.....+.++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 01 1234455555554332211111 24567788999999999999764 67888877666667899999
Q ss_pred EEcCchhhHhhhcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChh
Q 040735 327 VTHRNQGVAETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLN 406 (779)
Q Consensus 327 vTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~ 406 (779)
||||+..++..++...+|+++.|+.++||+||+++||+.. ..++.+.+++++|+++|+|+|||++++|+.|+++ +..
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 9999999998777778999999999999999999999754 3456788999999999999999999999999987 678
Q ss_pred HHHHHHhhhhcccccCCCCchHHHHHhhcCCCh-hhHhHhhhhccCCCCCccCHHHHHHHHHHcCCccCCCCCCCHHHHH
Q 040735 407 DWEFVLNANIWDLQEDKCDIVPALRVSYHFLPP-QLKQCFAYFSLFPKDYDFQEEEIILLWTAEGFLDQEYNGRKMEDLG 485 (779)
Q Consensus 407 ~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cfl~ls~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~ 485 (779)
+|+.++.++.... +..+..+|++||+.|++ ..|.||+++|+|+.++.++ .+..|.+.+....
T Consensus 406 ~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------- 468 (1153)
T PLN03210 406 DWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------- 468 (1153)
T ss_pred HHHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------
Confidence 9999998876533 34699999999999987 4999999999999987553 4667878765432
Q ss_pred HHHHHHHhhCccccccCCCCCcEEecccHHHHHHHhhccce-------EEeecc-cc-cccccccCCceeEEEEEecccc
Q 040735 486 REFVRELHSRSLVQQSSKNASRFVMHDLINDLSRWAAGELY-------FRIEDT-LA-GENRQKFSQSLRHFSYIHGEYD 556 (779)
Q Consensus 486 ~~~l~~L~~~~ll~~~~~~~~~~~~Hdlv~~~a~~~~~~~~-------~~~~~~-~~-~~~~~~~~~~~r~l~~~~~~~~ 556 (779)
+..++.|++++||+... .++.|||++|++|+.++.++. +..... .. -.....-...++.+++......
T Consensus 469 ~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 469 NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 22388999999998643 479999999999999987653 111000 00 0000112245666665433221
Q ss_pred cc-cccccccccccceEecccCcccccccccchHhhhhhc-----------------------CCCCccEEEecCCCCCc
Q 040735 557 GK-KRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLL-----------------------NLPRLRVFSLHGYHISK 612 (779)
Q Consensus 557 ~~-~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-----------------------~l~~L~~L~l~~n~l~~ 612 (779)
.. .....+.++.+|+.|.+.....-..+.....+|.++. .+.+|+.|++.+|.+..
T Consensus 546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 546 ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEK 625 (1153)
T ss_pred eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccc
Confidence 11 0112356777777776643310000001112222222 34556666666666666
Q ss_pred cCccccCCCccceEeccccc-ccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCC
Q 040735 613 LPNEIGNLKHLRFLNLSRTN-IQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKL 691 (779)
Q Consensus 613 lp~~~~~l~~L~~L~l~~n~-i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L 691 (779)
+|..+..+++|++|+|+++. +..+| .++.+++|++|+|++|..+..+|..++++++|++|++++|..++.+|..+ ++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 66666666666666666543 44555 35666666666666666666666666666666666666665566666554 56
Q ss_pred CCCcccCceee
Q 040735 692 TCLLTLSRFVV 702 (779)
Q Consensus 692 ~~L~~L~~~~~ 702 (779)
++|+.|.+.++
T Consensus 704 ~sL~~L~Lsgc 714 (1153)
T PLN03210 704 KSLYRLNLSGC 714 (1153)
T ss_pred CCCCEEeCCCC
Confidence 66666654433
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.5e-43 Score=371.09 Aligned_cols=278 Identities=35% Similarity=0.620 Sum_probs=226.8
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhc
Q 040735 190 REKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIAS 269 (779)
Q Consensus 190 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 269 (779)
||.++++|.++|.... .+.++|+|+||||+||||||.+++++..++.+|+.++|+.++...+...++..|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998743 367999999999999999999999977788999999999999999999999999999988
Q ss_pred CCCC--CcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhhHhhhcc-cccccC
Q 040735 270 DQCT--DKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGVAETMRA-VSTKTL 346 (779)
Q Consensus 270 ~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~~-~~~~~l 346 (779)
.... ...+.+.....+.+.|.++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7432 4567888999999999999999999999875 5888888888777789999999999998877664 678999
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhhhhccccc---CC
Q 040735 347 KELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEFVLNANIWDLQE---DK 423 (779)
Q Consensus 347 ~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~---~~ 423 (779)
++|+.++|++||.+.++... ...++.+.+.+++|+++|+|+||||+++|++|+.+.+..+|...++........ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 123345567899999999999999999999997766778999998876655432 24
Q ss_pred CCchHHHHHhhcCCChhhHhHhhhhccCCCCCccCHHHHHHHHHHcCCccC
Q 040735 424 CDIVPALRVSYHFLPPQLKQCFAYFSLFPKDYDFQEEEIILLWTAEGFLDQ 474 (779)
Q Consensus 424 ~~i~~~l~~sy~~L~~~~k~cfl~ls~fp~~~~i~~~~li~~W~aeg~i~~ 474 (779)
..+..++.+||+.||++.|.||+|||+||+++.|+++.++++|++||||..
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 568899999999999999999999999999999999999999999999976
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.67 E-value=2.1e-18 Score=180.99 Aligned_cols=226 Identities=22% Similarity=0.248 Sum_probs=165.8
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCc
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKH 622 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~ 622 (779)
.++.|+++.++.... ....++.++.||++.+..++- -..-+|+.+|.+..|++|||++|++.+.|..+..-++
T Consensus 55 qkLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~L-----KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn 127 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNNL-----KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKN 127 (1255)
T ss_pred hhhhhhhhhhhhhHh--hhhhhccchhhHHHhhhcccc-----ccCCCCchhcccccceeeecchhhhhhcchhhhhhcC
Confidence 456778877764422 235678899999999887652 2345799999999999999999999999999999999
Q ss_pred cceEeccccccccccccc-ccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCcee
Q 040735 623 LRFLNLSRTNIQILPESI-NSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFV 701 (779)
Q Consensus 623 L~~L~l~~n~i~~lp~~~-~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~ 701 (779)
+-+|+||+|+|..+|.++ -+|+.|-.|||++| .+..+|+.+..|..|++|.|++|++..---..+..|++|++|...+
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence 999999999999999874 58999999999999 9999999999999999999999983221112344566677766544
Q ss_pred eCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhccCCC----CCCCCeEEEeecCCCCC
Q 040735 702 VGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDMLKP----HQKLEELTIAGYGGTKF 777 (779)
Q Consensus 702 ~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~l~~----~~~L~~L~l~~~~~~~~ 777 (779)
....-...+..+..|.+|+ .++++.+ ++..+++ -.-++.+|..|+.+.+.++.+.- ..+|++|+|+.|+++.+
T Consensus 207 TqRTl~N~Ptsld~l~NL~-dvDlS~N-~Lp~vPe-cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHNLR-DVDLSEN-NLPIVPE-CLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL 283 (1255)
T ss_pred ccchhhcCCCchhhhhhhh-hcccccc-CCCcchH-HHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc
Confidence 4433333445566666666 5555442 2333333 34567777777766666655432 35788888888888777
Q ss_pred CC
Q 040735 778 PT 779 (779)
Q Consensus 778 P~ 779 (779)
|+
T Consensus 284 P~ 285 (1255)
T KOG0444|consen 284 PD 285 (1255)
T ss_pred hH
Confidence 74
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.60 E-value=1.8e-15 Score=185.55 Aligned_cols=149 Identities=20% Similarity=0.316 Sum_probs=70.7
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCC-ccCccccCCC
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHIS-KLPNEIGNLK 621 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~ 621 (779)
..++.+.+..+..........+..+++|+.|.+.++. +.+.+|. ..+++|++|+|++|.++ .+|..+++++
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~------l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN------FTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc------cccccCc--cccCCCCEEECcCCcccccCChHHhcCC
Confidence 3455565555433211111112366777777766543 2222221 13344444444444443 3444455555
Q ss_pred ccceEeccccccc-ccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCc
Q 040735 622 HLRFLNLSRTNIQ-ILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSR 699 (779)
Q Consensus 622 ~L~~L~l~~n~i~-~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~ 699 (779)
+|++|+|++|.+. .+|..++++++|++|++++|...+.+|..++++++|++|++++|...+.+|..++++++|++|++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 5555555555544 44555555555555555555333444555555555555555555544444544555555555443
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.59 E-value=2.2e-15 Score=184.76 Aligned_cols=127 Identities=24% Similarity=0.339 Sum_probs=60.5
Q ss_pred cccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCC-ccCccccCCCccceEeccccccc-cccccccccc
Q 040735 567 VERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHIS-KLPNEIGNLKHLRFLNLSRTNIQ-ILPESINSLY 644 (779)
Q Consensus 567 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~i~-~lp~~~~~L~ 644 (779)
+++|++|.+.++. +.+.+|..+.++++|++|+|++|.+. .+|..|+++++|++|+|++|.+. .+|..+++++
T Consensus 139 l~~L~~L~Ls~n~------~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (968)
T PLN00113 139 IPNLETLDLSNNM------LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212 (968)
T ss_pred cCCCCEEECcCCc------ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence 4445555544432 23334444444555555555555443 34444555555555555555444 3444455555
Q ss_pred ccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCc
Q 040735 645 NLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSR 699 (779)
Q Consensus 645 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~ 699 (779)
+|++|++++|.....+|..++++++|++|++++|...+.+|..++++++|++|.+
T Consensus 213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 5555555554333344444555555555555554433344444444444544443
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=6.8e-17 Score=143.58 Aligned_cols=159 Identities=26% Similarity=0.282 Sum_probs=133.0
Q ss_pred ccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccc
Q 040735 560 RLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPES 639 (779)
Q Consensus 560 ~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~ 639 (779)
.++.+-++++...|.++.+. + ..+|+.+..+.+|.+|++.+|+++++|.+++.|++|+.|++.-|++..+|..
T Consensus 25 ~~~gLf~~s~ITrLtLSHNK------l-~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNK------L-TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred hcccccchhhhhhhhcccCc------e-eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc
Confidence 34555667777777777765 2 4568888899999999999999999999999999999999999999999999
Q ss_pred cccccccceeeccCCcch-hhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhcccc
Q 040735 640 INSLYNLHTILLEDCRRL-KKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMH 718 (779)
Q Consensus 640 ~~~L~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~ 718 (779)
|+.++-|+.|||.+|+.. ..+|..|..++.|+.|+++.|. ..-+|+.+|+|++||.|++..+.. ...+.+++.|+.
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndl--l~lpkeig~lt~ 174 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDLTR 174 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCch--hhCcHHHHHHHH
Confidence 999999999999988432 4579999999999999999999 788999999999999997655443 346778888888
Q ss_pred ccceeEEcccC
Q 040735 719 LQGTLQISKLE 729 (779)
Q Consensus 719 L~~~L~i~~~~ 729 (779)
|+ .|.|.+..
T Consensus 175 lr-elhiqgnr 184 (264)
T KOG0617|consen 175 LR-ELHIQGNR 184 (264)
T ss_pred HH-HHhcccce
Confidence 88 88887643
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=5.3e-16 Score=163.27 Aligned_cols=205 Identities=25% Similarity=0.307 Sum_probs=157.9
Q ss_pred ccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCC--ccCccccCCCccceEecccccccccccc
Q 040735 562 KSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHIS--KLPNEIGNLKHLRFLNLSRTNIQILPES 639 (779)
Q Consensus 562 ~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~n~i~~lp~~ 639 (779)
..++.+.+|..|.+..+. + .++...+..++.||.+++..|++. .+|+.|..|.-|..||||+|++++.|..
T Consensus 49 eEL~~lqkLEHLs~~HN~------L-~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~ 121 (1255)
T KOG0444|consen 49 EELSRLQKLEHLSMAHNQ------L-ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN 121 (1255)
T ss_pred HHHHHHhhhhhhhhhhhh------h-HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh
Confidence 456667777777666554 1 344556678999999999999987 6899999999999999999999999999
Q ss_pred cccccccceeeccCCcchhhchhh-hcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhcccc
Q 040735 640 INSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMH 718 (779)
Q Consensus 640 ~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~ 718 (779)
+..-+++-+|+|++| .+..+|.. +.+|+-|-+|+|++|. +..+|+.+..|.+||+|.++++... ...+..|++++.
T Consensus 122 LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmts 198 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTS 198 (1255)
T ss_pred hhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchh
Confidence 999999999999999 99999987 6799999999999999 8999999999999999987655432 344556677776
Q ss_pred ccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHh----ccCCCCCCCCeEEEeecCCCCC
Q 040735 719 LQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVL----DMLKPHQKLEELTIAGYGGTKF 777 (779)
Q Consensus 719 L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l----~~l~~~~~L~~L~l~~~~~~~~ 777 (779)
|. .|.+++-.......+.....|.+|..++.+.+.+ +.+..+++|+.|+|++|.++++
T Consensus 199 L~-vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 199 LS-VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred hh-hhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee
Confidence 66 6666553322111222334555555555554443 4455678999999999988765
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2.5e-16 Score=139.99 Aligned_cols=135 Identities=27% Similarity=0.307 Sum_probs=112.6
Q ss_pred hhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCcccc
Q 040735 591 LQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKL 670 (779)
Q Consensus 591 ~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L 670 (779)
.+.+++++.++.|.|++|.++.+|+.|..|.+|+.|++++|+|+++|.+++.|++|+.|+++-| .+..+|.+|+.++.|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchh
Confidence 3456788889999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred ceeecCCCccc-ccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccC
Q 040735 671 HHLRNPNVHSL-EEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLE 729 (779)
Q Consensus 671 ~~L~l~~~~~~-~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~ 729 (779)
+.||+..|.+. ..+|..|..|+.|+.|.+..+.. ...+.+.++|++|+ -|.+.+.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lq-il~lrdnd 161 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQ-ILSLRDND 161 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhccee-EEeeccCc
Confidence 99999988732 24787788888888776543322 23456778888887 67766543
No 10
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.50 E-value=1.9e-12 Score=158.00 Aligned_cols=293 Identities=15% Similarity=0.133 Sum_probs=180.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCC-CCCHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFE-DFDVFRVSKLI 263 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i 263 (779)
..+|-|++-.+ .|... ...+++.|.|++|.||||++.++... ++.++|+++.. ..++......+
T Consensus 14 ~~~~~R~rl~~----~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLA----KLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHH----HHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 35667765444 44322 24689999999999999999988752 23689999964 44666677777
Q ss_pred HHHhhcCCCC------------CcccHHHHHHHHHHHhC--CCeEEEEEeCCcCCChhhhhhhc-ccCCCCCCCcEEEEE
Q 040735 264 LNSIASDQCT------------DKDDLNLLQEKLKKQLS--GKKFLVVLDDVWNENYNSWRALS-CPFGAGAFGSKIVVT 328 (779)
Q Consensus 264 l~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~-~~l~~~~~gs~IivT 328 (779)
+..+...... ...+...+...+...+. +.+++|||||+..-+......+. ..+.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7777532111 11222333333333332 68999999999654323333233 223333456789899
Q ss_pred cCchhhH---hhhcccccccCC----CCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcC
Q 040735 329 HRNQGVA---ETMRAVSTKTLK----ELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRG 401 (779)
Q Consensus 329 tR~~~v~---~~~~~~~~~~l~----~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~ 401 (779)
||...-. ..........+. +|+.+|+..+|....... . -.+.+..|.+.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~----~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP----I---EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC----C---CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9984211 110112234455 999999999997653211 1 1255778999999999999999877754
Q ss_pred CCChhHHHHHHhhhhccccc-CCCCchHHHHH-hhcCCChhhHhHhhhhccCCCCCccCHHHHHHHHHHcCCccCCCCCC
Q 040735 402 KDDLNDWEFVLNANIWDLQE-DKCDIVPALRV-SYHFLPPQLKQCFAYFSLFPKDYDFQEEEIILLWTAEGFLDQEYNGR 479 (779)
Q Consensus 402 ~~~~~~w~~~l~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~cfl~ls~fp~~~~i~~~~li~~W~aeg~i~~~~~~~ 479 (779)
...... ... +.+.. ....+...+.- .++.||++.+..+...|+++ .|+.+.+-.. ..
T Consensus 232 ~~~~~~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~------ 290 (903)
T PRK04841 232 NNSSLH--DSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TG------ 290 (903)
T ss_pred CCCchh--hhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cC------
Confidence 422100 000 11111 11234554433 47899999999999999996 3443322211 11
Q ss_pred CHHHHHHHHHHHHhhCccccc-cCCCCCcEEecccHHHHHHHhh
Q 040735 480 KMEDLGREFVRELHSRSLVQQ-SSKNASRFVMHDLINDLSRWAA 522 (779)
Q Consensus 480 ~~e~~~~~~l~~L~~~~ll~~-~~~~~~~~~~Hdlv~~~a~~~~ 522 (779)
.+.+...+++|.+++++.. .+.+...|+.|++++++.+...
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1224678999999999653 3334467899999999998764
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.39 E-value=8.1e-14 Score=140.18 Aligned_cols=203 Identities=23% Similarity=0.276 Sum_probs=131.4
Q ss_pred cccccccccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCccCccccCCCccceEecccccccccccc
Q 040735 561 LKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPES 639 (779)
Q Consensus 561 ~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~ 639 (779)
+++|.+|+.|..|.+..+. -..+|...+ ++++|.+|||+.|++++.|+.++-|++|.+||+|+|.|+.+|.+
T Consensus 221 lPef~gcs~L~Elh~g~N~-------i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 221 LPEFPGCSLLKELHVGENQ-------IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred CCCCCccHHHHHHHhcccH-------HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcc
Confidence 4566677777776665543 134566666 77888888888888888888888888888888888888888877
Q ss_pred cccccccceeeccCCc----------------------------------------------------------------
Q 040735 640 INSLYNLHTILLEDCR---------------------------------------------------------------- 655 (779)
Q Consensus 640 ~~~L~~L~~L~l~~~~---------------------------------------------------------------- 655 (779)
+++| +|+.|-+.||.
T Consensus 294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK 372 (565)
T ss_pred cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence 7777 77777776661
Q ss_pred --------------------------------------------------chhhchhhhcCccccceeecCCCcccccCC
Q 040735 656 --------------------------------------------------RLKKLCKNMGNLMKLHHLRNPNVHSLEEMP 685 (779)
Q Consensus 656 --------------------------------------------------~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p 685 (779)
.+.-.|..++.+++|..|++++|. +..+|
T Consensus 373 qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP 451 (565)
T KOG0472|consen 373 QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLP 451 (565)
T ss_pred ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcc
Confidence 111223334456777777777776 77788
Q ss_pred cccCCCCCCcccCceeeCCCCCCCchhh-hccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHH----hccCCC
Q 040735 686 KGFGKLTCLLTLSRFVVGKDSGSGLREL-KSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRV----LDMLKP 760 (779)
Q Consensus 686 ~~~~~L~~L~~L~~~~~~~~~~~~~~~L-~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~----l~~l~~ 760 (779)
.+++.+..||+|++..+.. ..++.+ -.+..|. .+ +.....+..++.....++.+|..|+...+. +..+..
T Consensus 452 ~e~~~lv~Lq~LnlS~NrF---r~lP~~~y~lq~lE-tl-las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgn 526 (565)
T KOG0472|consen 452 EEMGSLVRLQTLNLSFNRF---RMLPECLYELQTLE-TL-LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGN 526 (565)
T ss_pred hhhhhhhhhheeccccccc---ccchHHHhhHHHHH-HH-HhccccccccChHHhhhhhhcceeccCCCchhhCChhhcc
Confidence 8788887788877544321 122222 2222222 22 222234455556666778888887554443 445667
Q ss_pred CCCCCeEEEeecCCCCCC
Q 040735 761 HQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 761 ~~~L~~L~l~~~~~~~~P 778 (779)
+.||++|.|.||++. .|
T Consensus 527 mtnL~hLeL~gNpfr-~P 543 (565)
T KOG0472|consen 527 MTNLRHLELDGNPFR-QP 543 (565)
T ss_pred ccceeEEEecCCccC-CC
Confidence 899999999999886 55
No 12
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=8.5e-11 Score=128.90 Aligned_cols=302 Identities=13% Similarity=0.065 Sum_probs=176.8
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHH
Q 040735 183 NEAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKL 262 (779)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 262 (779)
.+..++||++++++|...+...-. +.....+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 456799999999999999854321 123456789999999999999999985432221234566777777778889999
Q ss_pred HHHHhhc-CCCCCcccHHHHHHHHHHHhC--CCeEEEEEeCCcCCC----hhhhhhhcccCCCCCCCc--EEEEEcCchh
Q 040735 263 ILNSIAS-DQCTDKDDLNLLQEKLKKQLS--GKKFLVVLDDVWNEN----YNSWRALSCPFGAGAFGS--KIVVTHRNQG 333 (779)
Q Consensus 263 il~~l~~-~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~----~~~~~~l~~~l~~~~~gs--~IivTtR~~~ 333 (779)
++.++.. .......+.+++...+.+.+. +++.+||||+++.-. ...+..+...+.. ..++ .+|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 9999875 222233455667777777764 567899999996521 1222233222221 1232 3566655543
Q ss_pred hHhhhc-------ccccccCCCCChHHHHHHHHHhhcCC--CCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhh--c--
Q 040735 334 VAETMR-------AVSTKTLKELSDDDCLRVLIQHSLGA--RDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL--R-- 400 (779)
Q Consensus 334 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~--~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l--~-- 400 (779)
+..... ....+.+.+++.++..+++..++... ...-.+..++.+++......|..+.|+.++-... +
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 322211 12467899999999999998776322 1112223333334433333556777777664322 1
Q ss_pred -CC--CChhHHHHHHhhhhcccccCCCCchHHHHHhhcCCChhhHhHhhhhccCCC--CCccCHHHHHHH--HHHcCCcc
Q 040735 401 -GK--DDLNDWEFVLNANIWDLQEDKCDIVPALRVSYHFLPPQLKQCFAYFSLFPK--DYDFQEEEIILL--WTAEGFLD 473 (779)
Q Consensus 401 -~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp~--~~~i~~~~li~~--W~aeg~i~ 473 (779)
+. -+.+......+... .....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 23445554444331 123455688999998887766553321 133555555432 23322111
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCcccccc
Q 040735 474 QEYNGRKMEDLGREFVRELHSRSLVQQS 501 (779)
Q Consensus 474 ~~~~~~~~e~~~~~~l~~L~~~~ll~~~ 501 (779)
..-.......|+++|...|+|+..
T Consensus 335 ----~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 ----EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred ----CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 111234566799999999999854
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.39 E-value=2e-13 Score=143.35 Aligned_cols=198 Identities=22% Similarity=0.267 Sum_probs=137.8
Q ss_pred cceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccC-ccccCCCccceEecccccccccc-ccccccccc
Q 040735 569 RLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILP-ESINSLYNL 646 (779)
Q Consensus 569 ~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp-~~~~~L~~L 646 (779)
+|..|.+.++. ++.-....+.-++.|++|||+.|.|+.+| ++|..=.++++|+|++|.|+.+- ..|.+|.+|
T Consensus 126 hl~~L~L~~N~------I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL 199 (873)
T KOG4194|consen 126 HLEKLDLRHNL------ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSL 199 (873)
T ss_pred ceeEEeeeccc------cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchh
Confidence 35555555433 33333344556778888888888888887 56666678888888888888773 457888888
Q ss_pred ceeeccCCcchhhchhh-hcCccccceeecCCCcccccC-CcccCCCCCCcccCce--eeCCCCCCCchhhhccccccce
Q 040735 647 HTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSLEEM-PKGFGKLTCLLTLSRF--VVGKDSGSGLRELKSLMHLQGT 722 (779)
Q Consensus 647 ~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~-p~~~~~L~~L~~L~~~--~~~~~~~~~~~~L~~L~~L~~~ 722 (779)
.+|.|+.| .+..+|.. |.+|++|+.|+|..|. +..+ -..|..|++|+.|.+- .+.......+-.+.++..|.
T Consensus 200 ~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~-- 275 (873)
T KOG4194|consen 200 LTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN-- 275 (873)
T ss_pred eeeecccC-cccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee--
Confidence 88888888 78888765 5668889999888887 5444 2336777888777543 33333445666667776664
Q ss_pred eEEcccCCCCCcchhhhccCCCCCCCchHHHHhccC-----CCCCCCCeEEEeecCCCCCCC
Q 040735 723 LQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDML-----KPHQKLEELTIAGYGGTKFPT 779 (779)
Q Consensus 723 L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~l-----~~~~~L~~L~l~~~~~~~~P~ 779 (779)
|..+.+..+ .....-.|+.|+.|+.+.+.++.+ .-+++|+.|+|++|+++++|.
T Consensus 276 L~~N~l~~v---n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 276 LETNRLQAV---NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred cccchhhhh---hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 555544333 445566788888887777666544 447899999999999998873
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.32 E-value=1.3e-11 Score=151.92 Aligned_cols=112 Identities=25% Similarity=0.366 Sum_probs=91.0
Q ss_pred ccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCC-CCccCccccCCCccceEecccc-cccccccccccc
Q 040735 566 DVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYH-ISKLPNEIGNLKHLRFLNLSRT-NIQILPESINSL 643 (779)
Q Consensus 566 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~~~~l~~L~~L~l~~n-~i~~lp~~~~~L 643 (779)
...+|+.|.+.++. + ..++..+..+++|+.|+|++|. +..+| .++.+++|++|+|++| .+..+|.++++|
T Consensus 609 ~~~~L~~L~L~~s~------l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 609 RPENLVKLQMQGSK------L-EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CccCCcEEECcCcc------c-cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhcc
Confidence 45666766666543 2 3455666689999999999874 66777 4888999999999987 467999999999
Q ss_pred cccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCc
Q 040735 644 YNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPK 686 (779)
Q Consensus 644 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 686 (779)
++|+.|++++|..++.+|..+ ++++|++|++++|..+..+|.
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence 999999999999999999876 789999999999876665553
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=1.7e-14 Score=144.97 Aligned_cols=203 Identities=22% Similarity=0.271 Sum_probs=115.9
Q ss_pred ccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccc
Q 040735 562 KSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESIN 641 (779)
Q Consensus 562 ~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~ 641 (779)
+.+..+..+..+....++ -..+|..+.++..|+.|+.+.|.+..+|++|+.+..|..|+..+|+++.+|++++
T Consensus 85 ~aig~l~~l~~l~vs~n~-------ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~ 157 (565)
T KOG0472|consen 85 AAIGELEALKSLNVSHNK-------LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMV 157 (565)
T ss_pred HHHHHHHHHHHhhcccch-------HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHH
Confidence 344555555555555443 1445666666777777777777777777777777777777777777777777777
Q ss_pred cccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccc
Q 040735 642 SLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQG 721 (779)
Q Consensus 642 ~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~ 721 (779)
++.+|..|++.+| .+..+|+..-+++.|++|+...|- ++.+|+.+|.|.+|.-|++-.+.. ..+++++.+..|.
T Consensus 158 ~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki---~~lPef~gcs~L~- 231 (565)
T KOG0472|consen 158 NLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKI---RFLPEFPGCSLLK- 231 (565)
T ss_pred HHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhccc---ccCCCCCccHHHH-
Confidence 7777777777777 666676665557777777777666 667777777777766665433222 1222333333232
Q ss_pred eeEEcccCCCCCcchhhhccCCCCCCCchHHH----HhccCCCCCCCCeEEEeecCCCCCC
Q 040735 722 TLQISKLENVKDVGDASEAQLNTKPDFKIEIR----VLDMLKPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 722 ~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~----~l~~l~~~~~L~~L~l~~~~~~~~P 778 (779)
.|.+.. +.+...+.+....|..+..|+...+ .++.++-+.+|.+|++++|.++.+|
T Consensus 232 Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 232 ELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred HHHhcc-cHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCC
Confidence 222221 1222223333344444444433222 2233333455666666666555554
No 16
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.29 E-value=2.1e-09 Score=116.67 Aligned_cols=303 Identities=14% Similarity=0.094 Sum_probs=174.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc-ccc---CceEEEEeCCCCCHHHH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQ-RHF---QIKSWTCVFEDFDVFRV 259 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~~~~~~~~~~ 259 (779)
+..++||+.++++|..+|..... +.....+.|+|++|+|||++++.++++.... ... -..+|+.+....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 34799999999999999865321 1234578999999999999999998743211 111 13467887777778889
Q ss_pred HHHHHHHhh---cCCCCCcccHHHHHHHHHHHh--CCCeEEEEEeCCcCCC---hhhhhhhcccC-CCCC--CCcEEEEE
Q 040735 260 SKLILNSIA---SDQCTDKDDLNLLQEKLKKQL--SGKKFLVVLDDVWNEN---YNSWRALSCPF-GAGA--FGSKIVVT 328 (779)
Q Consensus 260 ~~~il~~l~---~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~---~~~~~~l~~~l-~~~~--~gs~IivT 328 (779)
+..|+.++. ........+..+....+.+.+ .+++++||||+++.-. ......+.... .... ....+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999984 222212234445555565655 3568999999995431 11112222110 1111 22344555
Q ss_pred cCchhhHhhhc-------ccccccCCCCChHHHHHHHHHhhcCC-CCCCCChhHHHHHHHHHHHcCCChHHHHHHH-hhh
Q 040735 329 HRNQGVAETMR-------AVSTKTLKELSDDDCLRVLIQHSLGA-RDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG-GLL 399 (779)
Q Consensus 329 tR~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~-~~l 399 (779)
|........+. ....+.+.+.+.++..+++..++-.. ......++..+.+..++..+.|.|-.+..+. ...
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 54333221111 12467899999999999998876311 1112233444455667777788885443322 111
Q ss_pred ----cC---CCChhHHHHHHhhhhcccccCCCCchHHHHHhhcCCChhhHhHhhhhccCC--CCCccCHHHHHHHH--HH
Q 040735 400 ----RG---KDDLNDWEFVLNANIWDLQEDKCDIVPALRVSYHFLPPQLKQCFAYFSLFP--KDYDFQEEEIILLW--TA 468 (779)
Q Consensus 400 ----~~---~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp--~~~~i~~~~li~~W--~a 468 (779)
.. .-+.+......+... .....-++..||.+.+..+..++..- ++..+....+...+ ++
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 11 123333333333221 22344567889999887666554221 33345666665533 12
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHhhCccccccC
Q 040735 469 EGFLDQEYNGRKMEDLGREFVRELHSRSLVQQSS 502 (779)
Q Consensus 469 eg~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~ 502 (779)
+.+ . -..........++..|...|+|+...
T Consensus 322 ~~~-~---~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 322 EDI-G---VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred Hhc-C---CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 211 1 11233577888999999999998643
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.26 E-value=1.1e-12 Score=137.90 Aligned_cols=221 Identities=17% Similarity=0.196 Sum_probs=141.4
Q ss_pred ceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCcc-CccccCCC
Q 040735 544 SLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISKL-PNEIGNLK 621 (779)
Q Consensus 544 ~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~l-p~~~~~l~ 621 (779)
.+.++.+..+.+.... ...+..+.+|.+|.+..+. + ..+|...| +++.|+.|+|..|.|..+ --.|.+|.
T Consensus 174 ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrNr------i-ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~ 245 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRNR------I-TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP 245 (873)
T ss_pred CceEEeeccccccccc-cccccccchheeeecccCc------c-cccCHHHhhhcchhhhhhccccceeeehhhhhcCch
Confidence 4566666665543322 3456666677777776654 2 34566666 588888888888877754 35677888
Q ss_pred ccceEecccccccccccc-cccccccceeeccCCcchhhchhh-hcCccccceeecCCCcccccCCcccCCCCCCcccCc
Q 040735 622 HLRFLNLSRTNIQILPES-INSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSR 699 (779)
Q Consensus 622 ~L~~L~l~~n~i~~lp~~-~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~ 699 (779)
+|+.|.|..|+|..|-++ |..|.++++|+|..| .+..+-++ +.+|++|++|+++.|..-.--+.+..-..+|+.|++
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 888888888888877553 667888888888888 66666554 778888888888888733223344555567777765
Q ss_pred eeeCC--CCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHh--------ccCCCCCCCCeEEE
Q 040735 700 FVVGK--DSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVL--------DMLKPHQKLEELTI 769 (779)
Q Consensus 700 ~~~~~--~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l--------~~l~~~~~L~~L~l 769 (779)
..+.. .....+..|..|..| .+.. +.+.++.+..+..+++|+.|+...+.+ ..+..+++|++|.+
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~L----nLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEEL----NLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred cccccccCChhHHHHHHHhhhh----cccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 44432 223344445555444 3333 223445666777778887774433322 22444678888888
Q ss_pred eecCCCCCC
Q 040735 770 AGYGGTKFP 778 (779)
Q Consensus 770 ~~~~~~~~P 778 (779)
.||++..+|
T Consensus 400 ~gNqlk~I~ 408 (873)
T KOG4194|consen 400 TGNQLKSIP 408 (873)
T ss_pred cCceeeecc
Confidence 888877766
No 18
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=9.7e-10 Score=113.84 Aligned_cols=182 Identities=19% Similarity=0.199 Sum_probs=114.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHH----HHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEK----LKK 287 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~----l~~ 287 (779)
..++.|+|++|+|||||++.+++..... .+ ...|+ +....+..+++..++..++.+.. ..+....... +..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHH
Confidence 3588999999999999999999753321 11 12233 33345777888888888876543 2222222333 333
Q ss_pred Hh-CCCeEEEEEeCCcCCChhhhhhhcccCC---CCCCCcEEEEEcCchhhHhhhc----------ccccccCCCCChHH
Q 040735 288 QL-SGKKFLVVLDDVWNENYNSWRALSCPFG---AGAFGSKIVVTHRNQGVAETMR----------AVSTKTLKELSDDD 353 (779)
Q Consensus 288 ~l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~---~~~~gs~IivTtR~~~v~~~~~----------~~~~~~l~~L~~~~ 353 (779)
.. .+++++||+||+|......++.+..... .......|++|.... ....+. ....+.+++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 22 6788999999998866556665543221 112233456665543 221111 12457899999999
Q ss_pred HHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhh
Q 040735 354 CLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 399 (779)
Q Consensus 354 ~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l 399 (779)
..+++...+..........-..+..+.|++.|+|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999887654322111112334788999999999999999998765
No 19
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.17 E-value=2e-09 Score=119.70 Aligned_cols=298 Identities=18% Similarity=0.197 Sum_probs=190.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCC-CCHHHHHHH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFED-FDVFRVSKL 262 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~ 262 (779)
....|-|.+ +.+.|... .+.|++.|..|+|.|||||+.+... ....=..+.|.++.+. .++......
T Consensus 18 ~~~~v~R~r----L~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccHH----HHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHH
Confidence 344555654 55555433 3579999999999999999998874 1222346899998765 467778888
Q ss_pred HHHHhhcCCCC------------CcccHHHHHHHHHHHhC--CCeEEEEEeCCcCCChhhhh-hhcccCCCCCCCcEEEE
Q 040735 263 ILNSIASDQCT------------DKDDLNLLQEKLKKQLS--GKKFLVVLDDVWNENYNSWR-ALSCPFGAGAFGSKIVV 327 (779)
Q Consensus 263 il~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~-~l~~~l~~~~~gs~Iiv 327 (779)
++..+..-.+. ...+...+...+...+. .++..+||||..-....... .+...+.....+-..||
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 88888744332 23344445555555443 46899999998543222222 23333444556789999
Q ss_pred EcCchhh---HhhhcccccccC----CCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhc
Q 040735 328 THRNQGV---AETMRAVSTKTL----KELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLR 400 (779)
Q Consensus 328 TtR~~~v---~~~~~~~~~~~l----~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~ 400 (779)
|||...- +..--.....++ -.++.+|+-++|..... .+-.+.-.+.+.+..+|-+-|+..++-.++
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-------l~Ld~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-------LPLDAADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-------CCCChHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 9998732 211111223333 34889999999977541 112234578899999999999999998888
Q ss_pred CCCChhHHHHHHhhhhcccccCCCCchH-HHHHhhcCCChhhHhHhhhhccCCCCCccCHHHHHHHHHHcCCccCCCCCC
Q 040735 401 GKDDLNDWEFVLNANIWDLQEDKCDIVP-ALRVSYHFLPPQLKQCFAYFSLFPKDYDFQEEEIILLWTAEGFLDQEYNGR 479 (779)
Q Consensus 401 ~~~~~~~w~~~l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cfl~ls~fp~~~~i~~~~li~~W~aeg~i~~~~~~~ 479 (779)
.+.+.+.-...+.-. ...+.. ...--++.||+++|..++-+|+++.- . +.|+..-
T Consensus 239 ~~~~~~q~~~~LsG~-------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L------------- 294 (894)
T COG2909 239 NNTSAEQSLRGLSGA-------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL------------- 294 (894)
T ss_pred CCCcHHHHhhhccch-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH-------------
Confidence 543333222222110 001111 23345788999999999999998542 1 2333221
Q ss_pred CHHHHHHHHHHHHhhCcccc-ccCCCCCcEEecccHHHHHHHhhcc
Q 040735 480 KMEDLGREFVRELHSRSLVQ-QSSKNASRFVMHDLINDLSRWAAGE 524 (779)
Q Consensus 480 ~~e~~~~~~l~~L~~~~ll~-~~~~~~~~~~~Hdlv~~~a~~~~~~ 524 (779)
+-++.+...+++|.+++|+- +-++....|+.|.++.||-+.-...
T Consensus 295 tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 11345677899999999875 4455678999999999998765543
No 20
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.17 E-value=1.6e-10 Score=117.02 Aligned_cols=196 Identities=21% Similarity=0.216 Sum_probs=99.0
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHH---
Q 040735 187 VYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLI--- 263 (779)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i--- 263 (779)
|+||++++++|.+++.... ...+.|+|+.|+|||+|++.+.+.. ...-...+|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~~-~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNES-SLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhhh-HHHHHHHH
Confidence 7899999999999997543 3689999999999999999998733 2111133444443433222 22222
Q ss_pred -------HHHhhcCCCC---------CcccHHHHHHHHHHHh--CCCeEEEEEeCCcCCC------hhhhhhhcccCCC-
Q 040735 264 -------LNSIASDQCT---------DKDDLNLLQEKLKKQL--SGKKFLVVLDDVWNEN------YNSWRALSCPFGA- 318 (779)
Q Consensus 264 -------l~~l~~~~~~---------~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~------~~~~~~l~~~l~~- 318 (779)
...+...... ...........+.+.+ .+++++||+||+..-. ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 1122211110 1112222223333333 3455999999994432 0111122222222
Q ss_pred -CCCCcEEEEEcCchhhHhh--------hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh
Q 040735 319 -GAFGSKIVVTHRNQGVAET--------MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 389 (779)
Q Consensus 319 -~~~gs~IivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P 389 (779)
......+|++.....+... ......+.+++|+.+++++++....-.. ... +.-.+..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCH
Confidence 1223344455444443322 1223458999999999999998865332 111 223455689999999999
Q ss_pred HHHHH
Q 040735 390 LAAKT 394 (779)
Q Consensus 390 Lai~~ 394 (779)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98864
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.13 E-value=1.1e-11 Score=137.63 Aligned_cols=198 Identities=21% Similarity=0.255 Sum_probs=108.2
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNL 620 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l 620 (779)
.+....++.+.++...... ..+..+.+|..+....+. + ..+|..++...+|+.|++..|.++.+|+...++
T Consensus 239 ~p~nl~~~dis~n~l~~lp--~wi~~~~nle~l~~n~N~------l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~ 309 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLP--EWIGACANLEALNANHNR------L-VALPLRISRITSLVSLSAAYNELEYIPPFLEGL 309 (1081)
T ss_pred ccccceeeecchhhhhcch--HHHHhcccceEecccchh------H-HhhHHHHhhhhhHHHHHhhhhhhhhCCCccccc
Confidence 3455566666665443332 456677778777766544 2 445555666666666666666666666666666
Q ss_pred CccceEecccccccccccc--------------------------------------------------cccccccceee
Q 040735 621 KHLRFLNLSRTNIQILPES--------------------------------------------------INSLYNLHTIL 650 (779)
Q Consensus 621 ~~L~~L~l~~n~i~~lp~~--------------------------------------------------~~~L~~L~~L~ 650 (779)
++|++|+|..|+|..+|+. +.+..+|+.|+
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 6666666666666655532 23344555555
Q ss_pred ccCCcchhhchhh-hcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccC
Q 040735 651 LEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLE 729 (779)
Q Consensus 651 l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~ 729 (779)
|++| .++.+|.. +.++..|++|+++||+ +..+|..+.++..|++|....+. -..++++..|..|+ .++++.++
T Consensus 390 LsyN-rL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~---l~~fPe~~~l~qL~-~lDlS~N~ 463 (1081)
T KOG0618|consen 390 LSYN-RLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQ---LLSFPELAQLPQLK-VLDLSCNN 463 (1081)
T ss_pred eccc-ccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCc---eeechhhhhcCcce-EEecccch
Confidence 5555 55555554 4555555555555555 55555555555555555422111 12233555555555 45444321
Q ss_pred CCCCcchhhhccCCCCCCCchHHHHhccCCCCCCCCeEEEeecC
Q 040735 730 NVKDVGDASEAQLNTKPDFKIEIRVLDMLKPHQKLEELTIAGYG 773 (779)
Q Consensus 730 ~~~~~~~~~~~~L~~l~~L~~~~~~l~~l~~~~~L~~L~l~~~~ 773 (779)
+ ....+....|.++|++|+++||.
T Consensus 464 -L-------------------~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 464 -L-------------------SEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred -h-------------------hhhhhhhhCCCcccceeeccCCc
Confidence 1 11112222334788888888875
No 22
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.10 E-value=9.3e-10 Score=116.83 Aligned_cols=280 Identities=16% Similarity=0.150 Sum_probs=149.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 263 (779)
-.+|+|++..++.+..++..... .......+.|+|++|+|||+||+.+++.. ...+ .++. .........+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~-~~~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITS-GPALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEe-cccccChHHHHHH
Confidence 34699999999999888864321 12345678899999999999999998743 2221 1111 1111222223333
Q ss_pred HHHhhcCCCCCcccH----HHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhhHhhhc
Q 040735 264 LNSIASDQCTDKDDL----NLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGVAETMR 339 (779)
Q Consensus 264 l~~l~~~~~~~~~~~----~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~ 339 (779)
+..+.....--.++. ....+.+...+.+.+..+|+|+..+.. .+...++ +.+-|..|++...+...+.
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l~---~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDLP---PFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecCC---CceEEeecCCcccCCHHHH
Confidence 333322110000111 112233344444555555555542211 1111111 2355666777554433221
Q ss_pred --ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhhhhc
Q 040735 340 --AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEFVLNANIW 417 (779)
Q Consensus 340 --~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~~l~~~~~ 417 (779)
-...+.+++++.++..+++.+.+..... .. ..+.+..|++.|+|.|-.+..+...+. .|........-
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~---~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~~I 238 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGV-EI---DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDGVI 238 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCC-Cc---CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCCCC
Confidence 1246889999999999999987654322 22 235688999999999965555444321 11111100000
Q ss_pred ccccCCCCchHHHHHhhcCCChhhHhHhh-hhccCCCCCccCHHHHHHHHHHcCCccCCCCCCCHHHHHHHHHH-HHhhC
Q 040735 418 DLQEDKCDIVPALRVSYHFLPPQLKQCFA-YFSLFPKDYDFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVR-ELHSR 495 (779)
Q Consensus 418 ~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~ls~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~-~L~~~ 495 (779)
....-......+...+..|++..+..+. .+..|+.+ .+..+.+.... | . + .+.+++.++ .|++.
T Consensus 239 -~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---~--~----~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 239 -TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G---E--E----RDTIEDVYEPYLIQQ 304 (328)
T ss_pred -CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C---C--C----cchHHHHhhHHHHHc
Confidence 0000011223455667888888888775 66777665 56666654332 1 1 1 234454555 78999
Q ss_pred ccccccC
Q 040735 496 SLVQQSS 502 (779)
Q Consensus 496 ~ll~~~~ 502 (779)
+||+...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997544
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.10 E-value=7e-11 Score=136.09 Aligned_cols=125 Identities=19% Similarity=0.296 Sum_probs=67.0
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNL 620 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l 620 (779)
++..++.+.+.++.+.. ++. ...++|+.|.+.++. +. .+|..+. +.|+.|+|++|.+..+|..+.
T Consensus 197 Ip~~L~~L~Ls~N~Lts---LP~-~l~~nL~~L~Ls~N~------Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~-- 261 (754)
T PRK15370 197 IPEQITTLILDNNELKS---LPE-NLQGNIKTLYANSNQ------LT-SIPATLP--DTIQEMELSINRITELPERLP-- 261 (754)
T ss_pred cccCCcEEEecCCCCCc---CCh-hhccCCCEEECCCCc------cc-cCChhhh--ccccEEECcCCccCcCChhHh--
Confidence 34456666666554332 111 122467777666543 21 2333222 256667777776666665553
Q ss_pred CccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCc
Q 040735 621 KHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPK 686 (779)
Q Consensus 621 ~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 686 (779)
.+|++|++++|+++.+|..+. .+|++|++++| .+..+|..+. ++|++|++++|. +..+|.
T Consensus 262 s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~ 321 (754)
T PRK15370 262 SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNS-LTALPE 321 (754)
T ss_pred CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCCc-cccCCc
Confidence 356666676666666666553 35666666666 5555554432 245555555555 334443
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.08 E-value=1.5e-10 Score=133.36 Aligned_cols=183 Identities=16% Similarity=0.203 Sum_probs=120.2
Q ss_pred ccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLH 647 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~ 647 (779)
++|+.|.+.++. +. .+|..++ ++|+.|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|+
T Consensus 199 ~~L~~L~Ls~N~------Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~ 265 (754)
T PRK15370 199 EQITTLILDNNE------LK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQ 265 (754)
T ss_pred cCCcEEEecCCC------CC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCC
Confidence 468888887764 32 4555544 589999999999999997664 479999999999999998775 5899
Q ss_pred eeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcc
Q 040735 648 TILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISK 727 (779)
Q Consensus 648 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~ 727 (779)
+|++++| .+..+|..+. .+|++|++++|. +..+|..+. ++|+.|++..+.... ....+ ..+|+ .|.+.+
T Consensus 266 ~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~--LP~~l--~~sL~-~L~Ls~ 334 (754)
T PRK15370 266 SLDLFHN-KISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTA--LPETL--PPGLK-TLEAGE 334 (754)
T ss_pred EEECcCC-ccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCcccc--CCccc--cccce-eccccC
Confidence 9999988 7888998764 589999999998 778887654 366776654432211 11111 12344 454544
Q ss_pred cCCCCCcchhhhccCCCCCCCchHHHHhccCC--CCCCCCeEEEeecCCCCCC
Q 040735 728 LENVKDVGDASEAQLNTKPDFKIEIRVLDMLK--PHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 728 ~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~l~--~~~~L~~L~l~~~~~~~~P 778 (779)
+. +..++.... ++|+.|....+.+..+. -+++|+.|+|++|.++.+|
T Consensus 335 N~-Lt~LP~~l~---~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 335 NA-LTSLPASLP---PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLP 383 (754)
T ss_pred Cc-cccCChhhc---CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCC
Confidence 32 222332222 34555544433333221 1357777777777777666
No 25
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.08 E-value=5.1e-09 Score=110.45 Aligned_cols=271 Identities=16% Similarity=0.118 Sum_probs=148.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+|+|++..++.+..++..... .......+.++|++|+|||+||+.+.+.. ...+ ..+.... ......+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~-~~~~~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPA-LEKPGDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccch-hcCchhHHHHH
Confidence 3699999999999998864321 12345668899999999999999998742 2221 1111111 11111222233
Q ss_pred HHhhcCCCCCcccH----HHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhhHhhhc-
Q 040735 265 NSIASDQCTDKDDL----NLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGVAETMR- 339 (779)
Q Consensus 265 ~~l~~~~~~~~~~~----~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~- 339 (779)
..+.....--.++. ....+.+...+.+.+..+|+++.... ..+ ...++ +.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~---~~~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSV---RLDLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cce---eecCC---CeEEEEecCCccccCHHHHh
Confidence 33322110000010 12234455555555566666665332 111 11112 2455666777654433221
Q ss_pred -ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcC------C--CChhHHHH
Q 040735 340 -AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRG------K--DDLNDWEF 410 (779)
Q Consensus 340 -~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~------~--~~~~~w~~ 410 (779)
-...+.+.+++.++..+++.+.+..... .. ..+....|++.|+|.|-.+..++..+.. . -+.+....
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~---~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~ 224 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV-EI---EPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK 224 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC-Cc---CHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 1246789999999999999887653222 22 2356788999999999766555543210 0 01111111
Q ss_pred HHhhhhcccccCCCCchHHHHHhhcCCChhhHhHhh-hhccCCCCCccCHHHHHHHHHHcCCccCCCCCCCHHHHHHHHH
Q 040735 411 VLNANIWDLQEDKCDIVPALRVSYHFLPPQLKQCFA-YFSLFPKDYDFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFV 489 (779)
Q Consensus 411 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~ls~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l 489 (779)
....+...|..+++..+..+. .++.++.+ .+..+.+.... | .....++..+
T Consensus 225 ---------------~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~~~ 276 (305)
T TIGR00635 225 ---------------ALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIEDVY 276 (305)
T ss_pred ---------------HHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHHhh
Confidence 122245668888888877666 55666543 45554444332 1 1124566667
Q ss_pred H-HHhhCccccccC
Q 040735 490 R-ELHSRSLVQQSS 502 (779)
Q Consensus 490 ~-~L~~~~ll~~~~ 502 (779)
+ .|++++||+...
T Consensus 277 e~~Li~~~li~~~~ 290 (305)
T TIGR00635 277 EPYLLQIGFLQRTP 290 (305)
T ss_pred hHHHHHcCCcccCC
Confidence 7 699999997544
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.04 E-value=1.4e-11 Score=124.14 Aligned_cols=186 Identities=22% Similarity=0.251 Sum_probs=123.7
Q ss_pred hHhhhhhc-CCCCccEEEecCCCCCcc-CccccCCCccceEeccc-ccccccccc-cccccccceeeccCCcchhhc-hh
Q 040735 588 WSVLQRLL-NLPRLRVFSLHGYHISKL-PNEIGNLKHLRFLNLSR-TNIQILPES-INSLYNLHTILLEDCRRLKKL-CK 662 (779)
Q Consensus 588 ~~~~~~~~-~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~-n~i~~lp~~-~~~L~~L~~L~l~~~~~~~~l-p~ 662 (779)
..+|+..| .+++||.|||++|+|+.| |+.|.+|..|..|-+-+ |+|+.+|.. |++|..|+.|.+.-| .+.-+ ..
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~~ 158 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQD 158 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhHH
Confidence 34566666 788888888888888876 67788887776666655 788888764 677888888887777 44444 34
Q ss_pred hhcCccccceeecCCCcccccCCc-ccCCCCCCcccCceeeC--------------------------------------
Q 040735 663 NMGNLMKLHHLRNPNVHSLEEMPK-GFGKLTCLLTLSRFVVG-------------------------------------- 703 (779)
Q Consensus 663 ~~~~l~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L~~~~~~-------------------------------------- 703 (779)
.+..|++|..|.+..|. ...++. .+..+.+++++.+-...
T Consensus 159 al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~ 237 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN 237 (498)
T ss_pred HHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhc
Confidence 47777777777777776 555554 24444444443110000
Q ss_pred -----------------------CCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc---
Q 040735 704 -----------------------KDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM--- 757 (779)
Q Consensus 704 -----------------------~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~--- 757 (779)
......-.-++.|++|+ +|++.+ +.++.+.++.|..+.+++.|....+.++.
T Consensus 238 q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~-~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~ 315 (498)
T KOG4237|consen 238 QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLR-KLNLSN-NKITRIEDGAFEGAAELQELYLTRNKLEFVSS 315 (498)
T ss_pred ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccce-EeccCC-CccchhhhhhhcchhhhhhhhcCcchHHHHHH
Confidence 00011122367788888 888876 45667788889999999988554444432
Q ss_pred --CCCCCCCCeEEEeecCCCCC
Q 040735 758 --LKPHQKLEELTIAGYGGTKF 777 (779)
Q Consensus 758 --l~~~~~L~~L~l~~~~~~~~ 777 (779)
+..+++|+.|+|.+|+++.+
T Consensus 316 ~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 316 GMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred HhhhccccceeeeecCCeeEEE
Confidence 45678999999999988754
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=4e-10 Score=105.87 Aligned_cols=132 Identities=25% Similarity=0.295 Sum_probs=51.8
Q ss_pred ccccccccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCccCccccCCCccceEeccccccccccccc
Q 040735 562 KSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESI 640 (779)
Q Consensus 562 ~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~ 640 (779)
+.+.+..+++.|.+.++. ......+. .+.+|+.|+|++|.|+.++ .+..+++|++|++++|.|+.+++.+
T Consensus 13 ~~~~n~~~~~~L~L~~n~--------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQ--------ISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccc--------cccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 344455667777777654 22234555 5778889999999888875 5777888999999999998886655
Q ss_pred -ccccccceeeccCCcchhhch--hhhcCccccceeecCCCcccccCCcc----cCCCCCCcccCceeeCC
Q 040735 641 -NSLYNLHTILLEDCRRLKKLC--KNMGNLMKLHHLRNPNVHSLEEMPKG----FGKLTCLLTLSRFVVGK 704 (779)
Q Consensus 641 -~~L~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~~----~~~L~~L~~L~~~~~~~ 704 (779)
..+++|+.|++++| .+..+- ..+..+++|++|++.+|+ +...+.. +..+++|+.|+...+..
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 36888999999888 665543 236678888899998888 4444432 56778888887655543
No 28
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.96 E-value=1.1e-08 Score=120.63 Aligned_cols=311 Identities=16% Similarity=0.173 Sum_probs=176.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc-cccCceEEEEeCCCCC---HHHHHH
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQ-RHFQIKSWTCVFEDFD---VFRVSK 261 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~---~~~~~~ 261 (779)
+++||+.+++.|...+..... +...++.|.|..|||||+|+++|..-..-+ ..|-...+-....... ..+.++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r 77 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFR 77 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHH
Confidence 378999999999999976543 455699999999999999999998732111 1221111111111111 223334
Q ss_pred HHHHHhhcCCCC----------------------------------------CcccHH-----HHHHHHHHHh-CCCeEE
Q 040735 262 LILNSIASDQCT----------------------------------------DKDDLN-----LLQEKLKKQL-SGKKFL 295 (779)
Q Consensus 262 ~il~~l~~~~~~----------------------------------------~~~~~~-----~~~~~l~~~l-~~k~~L 295 (779)
+++.++...... .+...+ ..+..+.... +.++.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 444433111000 000011 1222333333 456999
Q ss_pred EEEeCCcCCChhhhhhhcccCCCCC------CCcEEEEEcCch--hhHhhhcccccccCCCCChHHHHHHHHHhhcCCCC
Q 040735 296 VVLDDVWNENYNSWRALSCPFGAGA------FGSKIVVTHRNQ--GVAETMRAVSTKTLKELSDDDCLRVLIQHSLGARD 367 (779)
Q Consensus 296 lVlDdvw~~~~~~~~~l~~~l~~~~------~gs~IivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 367 (779)
+|+||+.+.+....+-+........ +..-.+.|.+.. .+-........+.|.||+..+...+.........
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~- 236 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK- 236 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc-
Confidence 9999996554444333322211111 011222333322 1112222347899999999999999887653222
Q ss_pred CCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcCC------CChhHHHHHHhhhhcccccCCCCchHHHHHhhcCCChhh
Q 040735 368 FNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGK------DDLNDWEFVLNANIWDLQEDKCDIVPALRVSYHFLPPQL 441 (779)
Q Consensus 368 ~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 441 (779)
....+....|+++..|+|+.+..+-..+... .+...|..-..+.. .....+.+...+..-.+.||...
T Consensus 237 ----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~--~~~~~~~vv~~l~~rl~kL~~~t 310 (849)
T COG3899 237 ----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG--ILATTDAVVEFLAARLQKLPGTT 310 (849)
T ss_pred ----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC--CchhhHHHHHHHHHHHhcCCHHH
Confidence 2234668899999999999999999888774 23334433221111 11111225556889999999999
Q ss_pred HhHhhhhccCCCCCccCHHHHHHHHHHcCCccCCCCCCCHHHHHHHHHHHHhhCccccccCC-----CC--C-cEEeccc
Q 040735 442 KQCFAYFSLFPKDYDFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLVQQSSK-----NA--S-RFVMHDL 513 (779)
Q Consensus 442 k~cfl~ls~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~-----~~--~-~~~~Hdl 513 (779)
+..+...||+.. .|+.+.|...|-. ....++....+.|....++-..+. .. . +-..|+.
T Consensus 311 ~~Vl~~AA~iG~--~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~ 377 (849)
T COG3899 311 REVLKAAACIGN--RFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDR 377 (849)
T ss_pred HHHHHHHHHhCc--cCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHH
Confidence 999999999954 5566666655422 335666666666665555532211 11 1 1135777
Q ss_pred HHHHHH
Q 040735 514 INDLSR 519 (779)
Q Consensus 514 v~~~a~ 519 (779)
+++.|-
T Consensus 378 vqqaaY 383 (849)
T COG3899 378 VQQAAY 383 (849)
T ss_pred HHHHHh
Confidence 777664
No 29
>PF05729 NACHT: NACHT domain
Probab=98.95 E-value=3.1e-09 Score=101.21 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=85.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccc----cCceEEEEeCCCCCHH---HHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRH----FQIKSWTCVFEDFDVF---RVSKLILNSIASDQCTDKDDLNLLQEKL 285 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~~l 285 (779)
|++.|+|.+|+||||+++.++.+...... +...+|++........ .+...+..+.... ...... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES----IAPIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----hhhhHH---HH
Confidence 58999999999999999999875433322 3455666665444332 2333333333221 111111 22
Q ss_pred HHH-hCCCeEEEEEeCCcCCChh-------hhhhhccc-CCC-CCCCcEEEEEcCchhh---HhhhcccccccCCCCChH
Q 040735 286 KKQ-LSGKKFLVVLDDVWNENYN-------SWRALSCP-FGA-GAFGSKIVVTHRNQGV---AETMRAVSTKTLKELSDD 352 (779)
Q Consensus 286 ~~~-l~~k~~LlVlDdvw~~~~~-------~~~~l~~~-l~~-~~~gs~IivTtR~~~v---~~~~~~~~~~~l~~L~~~ 352 (779)
... -..++++||+|++.+-... .+..+... +.. ..+++++|||+|.... .........+.+.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 222 2578999999999542211 12222222 222 2468999999998765 333344467999999999
Q ss_pred HHHHHHHHh
Q 040735 353 DCLRVLIQH 361 (779)
Q Consensus 353 ~~~~lf~~~ 361 (779)
+..+++.+.
T Consensus 154 ~~~~~~~~~ 162 (166)
T PF05729_consen 154 DIKQYLRKY 162 (166)
T ss_pred HHHHHHHHH
Confidence 999988764
No 30
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.93 E-value=1e-07 Score=107.09 Aligned_cols=303 Identities=13% Similarity=0.117 Sum_probs=162.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---ccccC--ceEEEEeCCCCCHHH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRV---QRHFQ--IKSWTCVFEDFDVFR 258 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~~~~~~~~~ 258 (779)
+..+.||++++++|...|...-. +.+...++.|+|++|+|||++++.|.+.... ....+ ..++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45789999999999999865432 1223367889999999999999999864311 11122 346777777778888
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC---CCeEEEEEeCCcCCChhhhhhhcccCCC-CCCCcEEEE--EcCch
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQEKLKKQLS---GKKFLVVLDDVWNENYNSWRALSCPFGA-GAFGSKIVV--THRNQ 332 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~Iiv--TtR~~ 332 (779)
++..|.+++.................+...+. +...+||||++..-....-+.+...+.+ ...+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 88899988854433233333344445544442 2346999999943211111112211111 123455444 33322
Q ss_pred hh--------HhhhcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcCCC-
Q 040735 333 GV--------AETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKD- 403 (779)
Q Consensus 333 ~v--------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~- 403 (779)
.. ...++ ...+...|.+.++..+++..++-.....-.+..++-+|+.++...|-.=.||.++-.+.....
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 21 12221 234677999999999999988753322223344444444444444444556555544433211
Q ss_pred ---ChhHHHHHHhhhhcccccCCCCchHHHHHhhcCCChhhHhHhhhhccCCC---CCccCHHHHHHHH--HHc--C-Cc
Q 040735 404 ---DLNDWEFVLNANIWDLQEDKCDIVPALRVSYHFLPPQLKQCFAYFSLFPK---DYDFQEEEIILLW--TAE--G-FL 472 (779)
Q Consensus 404 ---~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp~---~~~i~~~~li~~W--~ae--g-~i 472 (779)
..++-..+.... ....+.-....||.+.|-.+..+...-+ ...++...+.... +++ | .+
T Consensus 992 skVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~i 1061 (1164)
T PTZ00112 992 QKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYI 1061 (1164)
T ss_pred CccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhc
Confidence 112222222111 0112334456789887765553332211 2234444443322 222 1 11
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhCccccccC
Q 040735 473 DQEYNGRKMEDLGREFVRELHSRSLVQQSS 502 (779)
Q Consensus 473 ~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~ 502 (779)
. .....+ ....|+.+|...|+|-..+
T Consensus 1062 G---v~plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1062 G---MCSNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred C---CCCcHH-HHHHHHHHHHhcCeEEecC
Confidence 1 111223 6777888888888876543
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.91 E-value=2.8e-09 Score=122.29 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=97.8
Q ss_pred CCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCC
Q 040735 598 PRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPN 677 (779)
Q Consensus 598 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 677 (779)
..|+.|++++|.++.+|.. +++|++|+|++|+++.+|... .+|+.|++++| .+..+|.. ..+|++|++++
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~ 351 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLPTL---PSGLQELSVSD 351 (788)
T ss_pred hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCc---ccccccccccC-cccccccc---ccccceEecCC
Confidence 4577788888888777753 467888888888888777633 34667778887 66677742 24788899998
Q ss_pred CcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc
Q 040735 678 VHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM 757 (779)
Q Consensus 678 ~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~ 757 (779)
|. +..+|.... +|+.|.+..+... .+..+ ..+|+ .|.+.++. +..++. ..++|+.|+...+.+..
T Consensus 352 N~-Ls~LP~lp~---~L~~L~Ls~N~L~---~LP~l--~~~L~-~LdLs~N~-Lt~LP~----l~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 352 NQ-LASLPTLPS---ELYKLWAYNNRLT---SLPAL--PSGLK-ELIVSGNR-LTSLPV----LPSELKELMVSGNRLTS 416 (788)
T ss_pred Cc-cCCCCCCCc---ccceehhhccccc---cCccc--ccccc-eEEecCCc-ccCCCC----cccCCCEEEccCCcCCC
Confidence 88 667776443 4445543332211 12222 23455 66665532 222221 23456666655555655
Q ss_pred CCC-CCCCCeEEEeecCCCCCCC
Q 040735 758 LKP-HQKLEELTIAGYGGTKFPT 779 (779)
Q Consensus 758 l~~-~~~L~~L~l~~~~~~~~P~ 779 (779)
+.. +.+|+.|++++|.++.+|.
T Consensus 417 IP~l~~~L~~L~Ls~NqLt~LP~ 439 (788)
T PRK15387 417 LPMLPSGLLSLSVYRNQLTRLPE 439 (788)
T ss_pred CCcchhhhhhhhhccCcccccCh
Confidence 533 3578899999998888873
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.86 E-value=6.2e-11 Score=124.95 Aligned_cols=155 Identities=24% Similarity=0.298 Sum_probs=89.3
Q ss_pred hhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccc
Q 040735 590 VLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMK 669 (779)
Q Consensus 590 ~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~ 669 (779)
+|..++.|-.|..+.|..|.+..+|..+++|..|.||||+.|+++.+|..++.|+ |+.|.+++| +++.+|..++.+..
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~t 167 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPT 167 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchh
Confidence 3444445555666666666666666666666667777777776666666666654 666666666 66666666666666
Q ss_pred cceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCc
Q 040735 670 LHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFK 749 (779)
Q Consensus 670 L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~ 749 (779)
|.+|+.+.|. +..+|..++.|.+|+.|.+..+.. ...+.+|..|. |. .|+.++ +++.. .+..|.+++.|+.|.
T Consensus 168 l~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l--~~lp~El~~Lp-Li-~lDfSc-Nkis~-iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 168 LAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHL--EDLPEELCSLP-LI-RLDFSC-NKISY-LPVDFRKMRHLQVLQ 240 (722)
T ss_pred HHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhh--hhCCHHHhCCc-ee-eeeccc-Cceee-cchhhhhhhhheeee
Confidence 6666666666 556666666666666665332221 23445555554 33 355543 23322 223344455454444
Q ss_pred hHHH
Q 040735 750 IEIR 753 (779)
Q Consensus 750 ~~~~ 753 (779)
++.+
T Consensus 241 LenN 244 (722)
T KOG0532|consen 241 LENN 244 (722)
T ss_pred eccC
Confidence 4333
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.84 E-value=6.7e-09 Score=119.22 Aligned_cols=108 Identities=20% Similarity=0.190 Sum_probs=81.1
Q ss_pred ccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLH 647 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~ 647 (779)
.+|+.|.+.++. +. .+|. .+++|++|+|++|.|+.+|.. .++|+.|++++|.++.+|... .+|+
T Consensus 222 ~~L~~L~L~~N~------Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~ 285 (788)
T PRK15387 222 AHITTLVIPDNN------LT-SLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLC 285 (788)
T ss_pred cCCCEEEccCCc------CC-CCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcC
Confidence 478888777654 22 2332 357899999999999999854 468899999999999988743 5688
Q ss_pred eeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCc
Q 040735 648 TILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSR 699 (779)
Q Consensus 648 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~ 699 (779)
.|++++| .+..+|.. +++|++|++++|. +..+|.... +|+.|.+
T Consensus 286 ~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp~---~L~~L~L 329 (788)
T PRK15387 286 KLWIFGN-QLTSLPVL---PPGLQELSVSDNQ-LASLPALPS---ELCKLWA 329 (788)
T ss_pred EEECcCC-cccccccc---ccccceeECCCCc-cccCCCCcc---ccccccc
Confidence 8999999 78888863 4789999999998 667776433 3445543
No 34
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.82 E-value=1.9e-10 Score=127.86 Aligned_cols=151 Identities=19% Similarity=0.238 Sum_probs=83.9
Q ss_pred CCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCC
Q 040735 598 PRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPN 677 (779)
Q Consensus 598 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 677 (779)
.+|+++++++|+++.+|.+++.+.+|+.|+..+|.++.+|..+...++|+.|.+..| .+..+|+...++++|++|++..
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh
Confidence 345555555555555555555555555555555555555555555555555555555 5555555555555555555555
Q ss_pred CcccccCCccc--------------------------CCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccCCC
Q 040735 678 VHSLEEMPKGF--------------------------GKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENV 731 (779)
Q Consensus 678 ~~~~~~~p~~~--------------------------~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~ 731 (779)
|. +..+|..+ ..++.|+.|.+.++ ..+...+.-|.+..+|+ -|+++.+ .+
T Consensus 320 N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~l~~~~hLK-VLhLsyN-rL 395 (1081)
T KOG0618|consen 320 NN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCFPVLVNFKHLK-VLHLSYN-RL 395 (1081)
T ss_pred cc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccchhhhcccccee-eeeeccc-cc
Confidence 55 44444321 12233444433222 22345566677777777 6777653 33
Q ss_pred CCcchhhhccCCCCCCCchHHH
Q 040735 732 KDVGDASEAQLNTKPDFKIEIR 753 (779)
Q Consensus 732 ~~~~~~~~~~L~~l~~L~~~~~ 753 (779)
..++...+.+|..|++|..+++
T Consensus 396 ~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccc
Confidence 4566777777777777744433
No 35
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.81 E-value=4.7e-08 Score=100.19 Aligned_cols=171 Identities=22% Similarity=0.264 Sum_probs=102.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 263 (779)
+.+++|....+.++++ .+++....+||++|+||||||+.+.. .....| ..++...+-.+-++.+
T Consensus 29 Q~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred hHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHH
Confidence 3455565555554443 23567888999999999999999987 333334 3333333333333333
Q ss_pred HHHhhcCCCCCcccHHHHHHHHH-HHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEE--EcCchhhH---hh
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLK-KQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVV--THRNQGVA---ET 337 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TtR~~~v~---~~ 337 (779)
++ .-+ ....+++.+|++|.|..-+..+-+.+. |....|.-|+| ||.++... ..
T Consensus 93 ~e------------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 93 IE------------------EARKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HH------------------HHHHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHH
Confidence 32 221 223589999999999776555544443 44445666666 77766421 12
Q ss_pred hcccccccCCCCChHHHHHHHHHhhcCCC-CCC--CChhHHHHHHHHHHHcCCChHH
Q 040735 338 MRAVSTKTLKELSDDDCLRVLIQHSLGAR-DFN--IPQSLKEVAEKIVKKCKGLPLA 391 (779)
Q Consensus 338 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~-~~~--~~~~~~~~~~~I~~~c~G~PLa 391 (779)
.....++.+++|+.++...++.+-+.... ... ...-.++....|+..++|---+
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 23457899999999999999988332111 111 0111234666788888887544
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.77 E-value=9.2e-10 Score=111.32 Aligned_cols=105 Identities=26% Similarity=0.381 Sum_probs=90.6
Q ss_pred CccEEEecCCCCCccC-ccccCCCccceEeccccccccc-ccccccccccceeeccCCcchhhchhh-hcCccccceeec
Q 040735 599 RLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQIL-PESINSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRN 675 (779)
Q Consensus 599 ~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l 675 (779)
.-..+.|..|.|+.|| ..|+.+++||.||||+|+|+.| |..|..|.+|..|-+-+|+.++.+|.+ |++|.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3567899999999998 6789999999999999999987 889999999988888886699999987 899999999999
Q ss_pred CCCcccccCCc-ccCCCCCCcccCceeeCC
Q 040735 676 PNVHSLEEMPK-GFGKLTCLLTLSRFVVGK 704 (779)
Q Consensus 676 ~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~ 704 (779)
.-|+ +..++. .+..|++|..|+++.+..
T Consensus 148 Nan~-i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 148 NANH-INCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred Chhh-hcchhHHHHHHhhhcchhcccchhh
Confidence 9988 555554 488899998888776543
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=6.2e-09 Score=114.26 Aligned_cols=179 Identities=26% Similarity=0.317 Sum_probs=131.9
Q ss_pred hhhcCCCCccEEEecCCCCCccCccccCCC-ccceEecccccccccccccccccccceeeccCCcchhhchhhhcCcccc
Q 040735 592 QRLLNLPRLRVFSLHGYHISKLPNEIGNLK-HLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKL 670 (779)
Q Consensus 592 ~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~-~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L 670 (779)
..+..++.+..|++.+|.++.+|+..+.+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L 188 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNL 188 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhh
Confidence 334466789999999999999998888885 999999999999999888999999999999999 889999888788999
Q ss_pred ceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCch
Q 040735 671 HHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKI 750 (779)
Q Consensus 671 ~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~ 750 (779)
+.|++++|. +..+|..++.+..|++|...... ....+..+.++..+. .|.+.+.... . .......+.+++.|..
T Consensus 189 ~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~--~~~~~~~~~~~~~l~-~l~l~~n~~~-~-~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 189 NNLDLSGNK-ISDLPPEIELLSALEELDLSNNS--IIELLSSLSNLKNLS-GLELSNNKLE-D-LPESIGNLSNLETLDL 262 (394)
T ss_pred hheeccCCc-cccCchhhhhhhhhhhhhhcCCc--ceecchhhhhccccc-ccccCCceee-e-ccchhccccccceecc
Confidence 999999999 88898877677778888754432 123444455555555 4443332211 1 0244566666777744
Q ss_pred HHH---HhccCCCCCCCCeEEEeecCCCCC
Q 040735 751 EIR---VLDMLKPHQKLEELTIAGYGGTKF 777 (779)
Q Consensus 751 ~~~---~l~~l~~~~~L~~L~l~~~~~~~~ 777 (779)
..+ .+..+.+..+|+.|+++++.+...
T Consensus 263 s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 263 SNNQISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccccccccccccCccCEEeccCcccccc
Confidence 443 334456778999999999877543
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.75 E-value=3.6e-09 Score=99.45 Aligned_cols=103 Identities=28% Similarity=0.392 Sum_probs=37.7
Q ss_pred CCCCccEEEecCCCCCccCcccc-CCCccceEecccccccccccccccccccceeeccCCcchhhchhhh-cCcccccee
Q 040735 596 NLPRLRVFSLHGYHISKLPNEIG-NLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNM-GNLMKLHHL 673 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp~~~~-~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~L 673 (779)
+...++.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .+..++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 5567899999999999874 565 5889999999999999986 5888999999999999 888887665 468999999
Q ss_pred ecCCCcccccCCc--ccCCCCCCcccCceee
Q 040735 674 RNPNVHSLEEMPK--GFGKLTCLLTLSRFVV 702 (779)
Q Consensus 674 ~l~~~~~~~~~p~--~~~~L~~L~~L~~~~~ 702 (779)
++++|. +..+-. .+..+++|+.|++.++
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-
T ss_pred ECcCCc-CCChHHhHHHHcCCCcceeeccCC
Confidence 999998 544432 2556667766655433
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.74 E-value=5.7e-09 Score=122.42 Aligned_cols=129 Identities=30% Similarity=0.378 Sum_probs=106.9
Q ss_pred CCCCccEEEecCCC--CCccCc-cccCCCccceEecccc-cccccccccccccccceeeccCCcchhhchhhhcCccccc
Q 040735 596 NLPRLRVFSLHGYH--ISKLPN-EIGNLKHLRFLNLSRT-NIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLH 671 (779)
Q Consensus 596 ~l~~L~~L~l~~n~--l~~lp~-~~~~l~~L~~L~l~~n-~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 671 (779)
+.+.|+.|-+.+|. +..++. .|..|++|++|||++| .+.+||.+|++|-+|++|+++++ .+..+|.++++|.+|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 55689999999996 667764 4788999999999977 57799999999999999999998 8999999999999999
Q ss_pred eeecCCCcccccCCcccCCCCCCcccCceeeC-CCCCCCchhhhccccccceeEEc
Q 040735 672 HLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVG-KDSGSGLRELKSLMHLQGTLQIS 726 (779)
Q Consensus 672 ~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~-~~~~~~~~~L~~L~~L~~~L~i~ 726 (779)
||++..+..+..+|..+..|.+|++|.++... ..+...+.++.+|++|+ .+.+.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~ 676 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSIT 676 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheee
Confidence 99999988666666556669999999876654 33455677777888777 66664
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.73 E-value=1.2e-07 Score=94.88 Aligned_cols=155 Identities=18% Similarity=0.167 Sum_probs=94.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
+.+.|+|++|+|||+|++.+++. .......+.|+...... .... .+.+.+. +
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~~----------------------~~~~~~~-~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFSP----------------------AVLENLE-Q 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhhH----------------------HHHhhcc-c
Confidence 57899999999999999999984 22223345566553110 0000 1111122 2
Q ss_pred eEEEEEeCCcCCC-hhhhhh-hcccCCCC-CCCcEEE-EEcCc---------hhhHhhhcccccccCCCCChHHHHHHHH
Q 040735 293 KFLVVLDDVWNEN-YNSWRA-LSCPFGAG-AFGSKIV-VTHRN---------QGVAETMRAVSTKTLKELSDDDCLRVLI 359 (779)
Q Consensus 293 ~~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~gs~Ii-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 359 (779)
.-+||+||+|... ...|.. +...+... ..|..+| +|++. +.+...+.....+++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3499999998632 234543 22222221 1355554 45543 3555666666789999999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhh
Q 040735 360 QHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 399 (779)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l 399 (779)
+.+....- ..+ .++..-|++.+.|..-.+..+-..+
T Consensus 172 ~~a~~~~l-~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGI-ELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 88864322 222 3667888999988876665554433
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.72 E-value=6.3e-09 Score=110.79 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=74.0
Q ss_pred ccccccceEecccCcccccccccchHhhhhhcCC---CCccEEEecCCCCCc-----cCccccCC-CccceEeccccccc
Q 040735 564 VSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNL---PRLRVFSLHGYHISK-----LPNEIGNL-KHLRFLNLSRTNIQ 634 (779)
Q Consensus 564 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l---~~L~~L~l~~n~l~~-----lp~~~~~l-~~L~~L~l~~n~i~ 634 (779)
+..+++|+.|.+.++. +....+..+..+ +.|+.|++++|.++. +...+..+ ++|+.|++++|.++
T Consensus 77 l~~~~~L~~L~l~~~~------~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 77 LTKGCGLQELDLSDNA------LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHhcCceeEEEccCCC------CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 3445677777766544 222222222222 447777777776652 22344555 67777777777766
Q ss_pred -----ccccccccccccceeeccCCcch----hhchhhhcCccccceeecCCCcccc----cCCcccCCCCCCcccCcee
Q 040735 635 -----ILPESINSLYNLHTILLEDCRRL----KKLCKNMGNLMKLHHLRNPNVHSLE----EMPKGFGKLTCLLTLSRFV 701 (779)
Q Consensus 635 -----~lp~~~~~L~~L~~L~l~~~~~~----~~lp~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~L~~L~~L~~~~ 701 (779)
.++..+..+.+|++|++++|... ..++..+..+++|++|++++|.... .++..+..+++|++|++..
T Consensus 151 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 151 GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 33445556667777777777322 1344445555677777777776221 1233355566677666544
Q ss_pred e
Q 040735 702 V 702 (779)
Q Consensus 702 ~ 702 (779)
+
T Consensus 231 n 231 (319)
T cd00116 231 N 231 (319)
T ss_pred C
Confidence 3
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.69 E-value=3.8e-07 Score=99.96 Aligned_cols=178 Identities=18% Similarity=0.227 Sum_probs=105.0
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 185 AEVYGREKDKEA---IVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 185 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
.++||++..+.. +..++... ....+.++|++|+||||||+.+++. .... |+.++........++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHH
Confidence 358888877655 77776432 3457888999999999999999873 2222 233322211111122
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEE--EcCchh--hH-
Q 040735 262 LILNSIASDQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVV--THRNQG--VA- 335 (779)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TtR~~~--v~- 335 (779)
.+++ ..... ..+++.+|++|+++.......+.+...+.. |..++| ||.+.. +.
T Consensus 79 ~ii~------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 79 EVIE------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHH------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccH
Confidence 2222 22111 145788999999987655566666554433 444444 344432 11
Q ss_pred hhhcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 040735 336 ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 397 (779)
Q Consensus 336 ~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 397 (779)
........+.+.+++.++...++.+.+..... ....-..+....|++.|+|.+..+..+..
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11122367899999999999999875432111 00012246677889999999977655443
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.60 E-value=6.7e-09 Score=109.89 Aligned_cols=130 Identities=25% Similarity=0.351 Sum_probs=98.2
Q ss_pred cccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEeccccccccccccccc
Q 040735 563 SVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINS 642 (779)
Q Consensus 563 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~ 642 (779)
.+.++..|..|.+..+. + ..+|..+|.++ |++|-+++|+++.+|..++.+.+|..||.+.|.+..+|..++.
T Consensus 116 ~i~~L~~lt~l~ls~Nq------l-S~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~ 187 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQ------L-SHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGY 187 (722)
T ss_pred hhhhhhHHHHhhhccch------h-hcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhh
Confidence 34455555555555443 1 33566666554 8888888888888888888888888888888888888888888
Q ss_pred ccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeC
Q 040735 643 LYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVG 703 (779)
Q Consensus 643 L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~ 703 (779)
|.+|+.|+++.| .+..+|+.+..| .|..||++.|+ +..+|-.|.+|+.||+|-+-++.
T Consensus 188 l~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 188 LTSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHHHHHHHhhh-hhhhCCHHHhCC-ceeeeecccCc-eeecchhhhhhhhheeeeeccCC
Confidence 888888888888 788888887755 58888888888 77888888888888888654443
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=4.4e-08 Score=112.67 Aligned_cols=99 Identities=22% Similarity=0.309 Sum_probs=78.7
Q ss_pred CccEEEecCCCCC-ccCccccCCCccceEeccccccc-ccccccccccccceeeccCCcchhhchhhhcCccccceeecC
Q 040735 599 RLRVFSLHGYHIS-KLPNEIGNLKHLRFLNLSRTNIQ-ILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNP 676 (779)
Q Consensus 599 ~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~i~-~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~ 676 (779)
.++.|+|++|.+. .+|..|++|++|++|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888887 67888888888888888888887 778888888888888888886666788888888888888888
Q ss_pred CCcccccCCcccCCC-CCCccc
Q 040735 677 NVHSLEEMPKGFGKL-TCLLTL 697 (779)
Q Consensus 677 ~~~~~~~~p~~~~~L-~~L~~L 697 (779)
+|.+.+.+|..++.+ .++..+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCcccccCChHHhhccccCceE
Confidence 888777888777653 234444
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=6.7e-08 Score=111.18 Aligned_cols=111 Identities=20% Similarity=0.292 Sum_probs=95.0
Q ss_pred cceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCC-ccCccccCCCccceEeccccccc-cccccccccccc
Q 040735 569 RLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHIS-KLPNEIGNLKHLRFLNLSRTNIQ-ILPESINSLYNL 646 (779)
Q Consensus 569 ~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~i~-~lp~~~~~L~~L 646 (779)
.++.|.+.++. +.+.+|..+.++++|+.|+|++|.+. .+|..++++++|++|+|++|+++ .+|..+++|++|
T Consensus 419 ~v~~L~L~~n~------L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQG------LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCC------ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 35666666544 66788888889999999999999998 78999999999999999999998 789999999999
Q ss_pred ceeeccCCcchhhchhhhcCc-cccceeecCCCcccccCC
Q 040735 647 HTILLEDCRRLKKLCKNMGNL-MKLHHLRNPNVHSLEEMP 685 (779)
Q Consensus 647 ~~L~l~~~~~~~~lp~~~~~l-~~L~~L~l~~~~~~~~~p 685 (779)
++|+|++|...+.+|..++.+ .++..+++.+|..+...|
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999997778999988764 577889999887655544
No 46
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.58 E-value=2.2e-08 Score=106.57 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=51.5
Q ss_pred cCC-CCccEEEecCCCCC-----ccCccccCCCccceEeccccccc-----ccccccccccccceeeccCCcch----hh
Q 040735 595 LNL-PRLRVFSLHGYHIS-----KLPNEIGNLKHLRFLNLSRTNIQ-----ILPESINSLYNLHTILLEDCRRL----KK 659 (779)
Q Consensus 595 ~~l-~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~l~~n~i~-----~lp~~~~~L~~L~~L~l~~~~~~----~~ 659 (779)
..+ ++|+.|++++|.++ .++..+..+.+|++|++++|.++ .++..+..+++|+.|++++|... ..
T Consensus 133 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 212 (319)
T cd00116 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASA 212 (319)
T ss_pred HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHH
Confidence 344 66777777777666 23344556667777777777665 23444455567777777776321 23
Q ss_pred chhhhcCccccceeecCCCc
Q 040735 660 LCKNMGNLMKLHHLRNPNVH 679 (779)
Q Consensus 660 lp~~~~~l~~L~~L~l~~~~ 679 (779)
++..+..+++|++|++++|.
T Consensus 213 l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 213 LAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHhcccCCCCEEecCCCc
Confidence 34445566677777777766
No 47
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.56 E-value=1.5e-07 Score=85.55 Aligned_cols=117 Identities=16% Similarity=0.150 Sum_probs=79.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccc---cccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQ---RHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQ 288 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 288 (779)
.+++.|+|++|+|||++++.+.++.... ..-..++|+.+....+...+...++.+++.... ...+...+.+.+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-SRQTSDELRSLLIDA 82 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHHHHHHH
Confidence 4789999999999999999998743211 002355799998888999999999999998765 345666777777777
Q ss_pred hCCC-eEEEEEeCCcCC-ChhhhhhhcccCCCCCCCcEEEEEcCc
Q 040735 289 LSGK-KFLVVLDDVWNE-NYNSWRALSCPFGAGAFGSKIVVTHRN 331 (779)
Q Consensus 289 l~~k-~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTtR~ 331 (779)
+... ..+||+|++..- ....++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7544 469999999543 3334444433333 456777777665
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.55 E-value=6.3e-07 Score=90.08 Aligned_cols=170 Identities=18% Similarity=0.159 Sum_probs=98.0
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhc
Q 040735 190 REKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIAS 269 (779)
Q Consensus 190 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 269 (779)
.+..++.+..++.. .....+.|+|++|+|||+||+.+++.. .......+++++..-.+. .
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~~------~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQA------D------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHHh------H------
Confidence 45567777777532 234689999999999999999998732 222233455554322110 0
Q ss_pred CCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChh-hh-hhhcccCCC-CCCCcEEEEEcCchh---------hHhh
Q 040735 270 DQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYN-SW-RALSCPFGA-GAFGSKIVVTHRNQG---------VAET 337 (779)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~IivTtR~~~---------v~~~ 337 (779)
. .+...+.+ .-+||+||+..-... .| ..+...+.. ...+..+|+||+... +...
T Consensus 82 ---------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 0 01111222 238999999653221 22 233332221 122457888887532 1222
Q ss_pred hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 040735 338 MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 397 (779)
Q Consensus 338 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 397 (779)
+.....+++.+++.++...++...+-... ... -.+..+.|++.+.|.|..+..+..
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~---~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRG-LQL---PDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHhccCCHHHHHHHHH
Confidence 22235789999999999998876543211 112 225567777889999987776653
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=2.4e-06 Score=90.23 Aligned_cols=180 Identities=16% Similarity=0.198 Sum_probs=115.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc----ccccccCceEEEEe-CCCCCHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDD----RVQRHFQIKSWTCV-FEDFDVFRV 259 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~-~~~~~~~~~ 259 (779)
.+++|.+..++.+..++..+. -.....++|+.|+||||+|+.++... ....|.+...|... +......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357899999999999986433 24577899999999999999887631 12344554445432 22222222
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchh-hHhhh
Q 040735 260 SKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQG-VAETM 338 (779)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~~ 338 (779)
.+++.+.+.... ..+++-++|+|++...+...++.+...+.....++.+|++|.+.+ +...+
T Consensus 78 ir~~~~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 IRNIIEEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred HHHHHHHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 223333322211 124566778888866666788888888887777888888886653 22222
Q ss_pred -cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 339 -RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 339 -~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
.....+.+.+++.++....+.+...+ .+ .+.+..++..++|.|.-+...
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYND-----IK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 23468899999999998877654311 11 234667889999998755433
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=1.8e-08 Score=98.38 Aligned_cols=130 Identities=22% Similarity=0.219 Sum_probs=70.0
Q ss_pred CccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCce
Q 040735 621 KHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRF 700 (779)
Q Consensus 621 ~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~ 700 (779)
..|..||||+|.|+.+-+++.-++.++.|++++| .+..+.. +..|++|.+||+++|. +.++-.+-.+|-|.++|.+.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence 3467777777777777666666777777777776 4444433 6666777777777776 44443332344445555432
Q ss_pred eeCCCCCCCchhhhccccccc--eeEEcccCCCCCcchhhhccCCCCCCCchHHHHhccCCCCCCCCeEEEeecCCCCCC
Q 040735 701 VVGKDSGSGLRELKSLMHLQG--TLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDMLKPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 701 ~~~~~~~~~~~~L~~L~~L~~--~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~l~~~~~L~~L~l~~~~~~~~P 778 (779)
. ..++.|+.|.+|.. .|++.++ ++ ...+...++..+|+|+.|.|.+|++..+|
T Consensus 361 ~------N~iE~LSGL~KLYSLvnLDl~~N-~I------------------e~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 361 Q------NKIETLSGLRKLYSLVNLDLSSN-QI------------------EELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred h------hhHhhhhhhHhhhhheecccccc-ch------------------hhHHHhcccccccHHHHHhhcCCCccccc
Confidence 2 22333333333320 2222221 00 01122345566777777777777776665
No 51
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=4.1e-06 Score=94.19 Aligned_cols=195 Identities=15% Similarity=0.149 Sum_probs=111.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+.......+. +..+......+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 468999999999999986432 235667999999999999998765321111100 00011111111111
Q ss_pred HH-----hhcCCCCCcccHHHHHHHHHHH----hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch-hh
Q 040735 265 NS-----IASDQCTDKDDLNLLQEKLKKQ----LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ-GV 334 (779)
Q Consensus 265 ~~-----l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v 334 (779)
.. +..... ....++++.+.+... ..++.-++|||++...+...++.++..+-......++|+||.+. .+
T Consensus 84 ~G~h~DviEIDAa-s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 84 EGRFVDYVEMDAA-SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred cCCCceEEEeccc-ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 00 000000 011122222222211 13455689999997766667888877665555567777777664 33
Q ss_pred Hhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh-HHHHHHH
Q 040735 335 AETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP-LAAKTLG 396 (779)
Q Consensus 335 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~~ 396 (779)
...+ .....+.+.+++.++..+.+.+.+-.... . ...+....|++.++|.. -|+..+-
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~---id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-A---FEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3222 23468999999999999988776532221 1 12366778999999866 4554433
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=1.2e-08 Score=99.53 Aligned_cols=126 Identities=21% Similarity=0.255 Sum_probs=83.5
Q ss_pred ccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccc
Q 040735 566 DVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYN 645 (779)
Q Consensus 566 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~ 645 (779)
-...|..+.++.+. + ..+-.+.--.+.+++|++++|.|..+- ++..|.+|+.||||+|.++++-.+-.+|-|
T Consensus 282 TWq~LtelDLS~N~------I-~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 282 TWQELTELDLSGNL------I-TQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGN 353 (490)
T ss_pred hHhhhhhccccccc------h-hhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcC
Confidence 34455666665543 1 122222224567788888888777663 367777888888888877777666667777
Q ss_pred cceeeccCCcchhhchhhhcCccccceeecCCCcccccCC--cccCCCCCCcccCceee
Q 040735 646 LHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMP--KGFGKLTCLLTLSRFVV 702 (779)
Q Consensus 646 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~L~~L~~L~~~~~ 702 (779)
.++|.|++| .+..+ +++++|.+|.+||+++|+ +..+. .+||+|+.|++|.+.++
T Consensus 354 IKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 354 IKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred Eeeeehhhh-hHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCC
Confidence 788888877 66655 457788888888888887 54443 35788888887765443
No 53
>PTZ00202 tuzin; Provisional
Probab=98.51 E-value=3.2e-06 Score=88.59 Aligned_cols=169 Identities=11% Similarity=0.147 Sum_probs=101.1
Q ss_pred CCCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHH
Q 040735 181 LVNEAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVS 260 (779)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 260 (779)
+.+.+.|+||+.++..+...|...+. ...+++.|.|++|+|||||++.+..... + .+++.... +..+++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElL 326 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTL 326 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHH
Confidence 34566899999999999999965442 2456999999999999999999886322 2 13332223 679999
Q ss_pred HHHHHHhhcCCCCCc-ccHHHHHHHHHHHh-C-CCeEEEEEeCCcCCCh-hhhhhhcccCCCCCCCcEEEEEcCchhhHh
Q 040735 261 KLILNSIASDQCTDK-DDLNLLQEKLKKQL-S-GKKFLVVLDDVWNENY-NSWRALSCPFGAGAFGSKIVVTHRNQGVAE 336 (779)
Q Consensus 261 ~~il~~l~~~~~~~~-~~~~~~~~~l~~~l-~-~k~~LlVlDdvw~~~~-~~~~~l~~~l~~~~~gs~IivTtR~~~v~~ 336 (779)
+.++.+|+.+..... +-.+.+.+.+.+.- . +++.+||+-==...+. .-+.+.. .+.....-|+|++---.+.+..
T Consensus 327 r~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 327 RSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcch
Confidence 999999997432111 11233333333322 3 6666666632111111 1122211 2223334577877655443321
Q ss_pred hh---cccccccCCCCChHHHHHHHHHh
Q 040735 337 TM---RAVSTKTLKELSDDDCLRVLIQH 361 (779)
Q Consensus 337 ~~---~~~~~~~l~~L~~~~~~~lf~~~ 361 (779)
.. ..-..|.+++++.++|.....+.
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhc
Confidence 11 12256788999999998876553
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=4.2e-08 Score=100.96 Aligned_cols=158 Identities=18% Similarity=0.155 Sum_probs=104.8
Q ss_pred cccccccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCccCcc--ccCCCccceEeccccccc--ccc
Q 040735 563 SVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISKLPNE--IGNLKHLRFLNLSRTNIQ--ILP 637 (779)
Q Consensus 563 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp~~--~~~l~~L~~L~l~~n~i~--~lp 637 (779)
....|+++|.|.++.+-.+ .+.....+. .|++|+.|+|+.|.+...-++ -..+.+|+.|.|+.|+++ .+-
T Consensus 141 ~~k~~~~v~~LdLS~NL~~-----nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~ 215 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFH-----NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQ 215 (505)
T ss_pred hhhhCCcceeecchhhhHH-----hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHH
Confidence 4567889999988876532 233344555 899999999999988744322 236789999999999988 343
Q ss_pred cccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCC--cccCCCCCCcccCceeeCCCCCCCc-----
Q 040735 638 ESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMP--KGFGKLTCLLTLSRFVVGKDSGSGL----- 710 (779)
Q Consensus 638 ~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~L~~L~~L~~~~~~~~~~~~~----- 710 (779)
.-....++|+.|+|.+|..+..--.....++.|+.|+|++|++ -..+ .-++.|+.|..|++...+..+...+
T Consensus 216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 216 WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccchhhhhccccCcchhcCCCccch
Confidence 3445678999999999853332223345677899999999984 4555 3377888888887655544332111
Q ss_pred hhhhccccccceeEEcc
Q 040735 711 RELKSLMHLQGTLQISK 727 (779)
Q Consensus 711 ~~L~~L~~L~~~L~i~~ 727 (779)
.-...+.+|+ .|.+..
T Consensus 295 ~kt~~f~kL~-~L~i~~ 310 (505)
T KOG3207|consen 295 DKTHTFPKLE-YLNISE 310 (505)
T ss_pred hhhcccccce-eeeccc
Confidence 1134455565 666654
No 55
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=4.3e-06 Score=89.90 Aligned_cols=194 Identities=17% Similarity=0.161 Sum_probs=107.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+..++.+...+.... -...+.++|++|+||||+|+.+.+.......+. ..+......-..+.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 468999999999999886432 235678999999999999999876321110000 00000000001111
Q ss_pred HHhhcC----CCCCcccHHHHHHHHHHH----hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch-hhH
Q 040735 265 NSIASD----QCTDKDDLNLLQEKLKKQ----LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ-GVA 335 (779)
Q Consensus 265 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~ 335 (779)
...... ........++..+.+... ..+++-++|+|++..-....++.+...+.......++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 000000 000001122221111111 12455699999997655556777766665555566667666543 333
Q ss_pred hhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 040735 336 ETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 394 (779)
Q Consensus 336 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 394 (779)
..+ .....+++.+++.++....+...+..... . -..+.+..|++.++|.|-.+..
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~---i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESI-D---TDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 322 22367899999999999888775533221 1 1225677889999998864433
No 56
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.49 E-value=1.3e-07 Score=72.91 Aligned_cols=57 Identities=28% Similarity=0.528 Sum_probs=39.5
Q ss_pred CCccEEEecCCCCCccC-ccccCCCccceEeccccccccccc-ccccccccceeeccCC
Q 040735 598 PRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDC 654 (779)
Q Consensus 598 ~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~ 654 (779)
++|++|++++|.++.+| ..|.++++|++|++++|.++.+|+ .|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35677777777777776 456677777777777777776643 5667777777777766
No 57
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.48 E-value=2.4e-06 Score=85.99 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=101.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL 289 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 289 (779)
.+...+.+||++|+||||||+.+....+... ..||..+....-..-.++|+++-... ..+
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~----------------~~l 219 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE----------------KSL 219 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH----------------Hhh
Confidence 3567889999999999999999987433332 45777776665555556665543211 234
Q ss_pred CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEE--EcCchhhH---hhhcccccccCCCCChHHHHHHHHHhhc-
Q 040735 290 SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVV--THRNQGVA---ETMRAVSTKTLKELSDDDCLRVLIQHSL- 363 (779)
Q Consensus 290 ~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TtR~~~v~---~~~~~~~~~~l~~L~~~~~~~lf~~~a~- 363 (779)
.++|.+|++|.|...+..+-+ .++|...+|.-++| ||.+.... ..+....++.|++|..++...++.+..-
T Consensus 220 ~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 678999999999765433333 34555556776665 77776421 2223456899999999999998887321
Q ss_pred -C-CCC---CCCC---hhHHHHHHHHHHHcCCChH
Q 040735 364 -G-ARD---FNIP---QSLKEVAEKIVKKCKGLPL 390 (779)
Q Consensus 364 -~-~~~---~~~~---~~~~~~~~~I~~~c~G~PL 390 (779)
+ ... .-++ .....+..-++..|+|-.-
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1 111 1111 1234566777888888754
No 58
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.48 E-value=4.1e-07 Score=88.24 Aligned_cols=49 Identities=24% Similarity=0.340 Sum_probs=33.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDR 237 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 237 (779)
+||||+++++++...|... .....+.+.|+|++|+|||+|.++++....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999522 234568999999999999999999987433
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.45 E-value=1.3e-06 Score=81.12 Aligned_cols=125 Identities=17% Similarity=0.091 Sum_probs=71.1
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHh
Q 040735 188 YGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSI 267 (779)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 267 (779)
+|++..++.+...+.... .+.+.|+|++|+|||++++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~------~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP------PKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 478888999988885432 36889999999999999999997432 112344566554433322211111000
Q ss_pred hcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC---hhhhhhhcccCCCC---CCCcEEEEEcCchh
Q 040735 268 ASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN---YNSWRALSCPFGAG---AFGSKIVVTHRNQG 333 (779)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~---~~~~~~l~~~l~~~---~~gs~IivTtR~~~ 333 (779)
............++.++|+||++... ...+......+... ..+..||+||....
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00111122234567899999997431 12222222222221 35778888887653
No 60
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.44 E-value=3.3e-06 Score=90.56 Aligned_cols=200 Identities=14% Similarity=0.107 Sum_probs=106.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC-ceEEEEeCCCCCH--HHHH-
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQ-IKSWTCVFEDFDV--FRVS- 260 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~--~~~~- 260 (779)
..++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+... ...+. ..+.+++++-.+. ..+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 46899999999999988543 234678999999999999999876321 11121 1233333221100 0000
Q ss_pred -HHHHHHhhcCCCCCcccHHHHHHHHHHH---h--CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch-h
Q 040735 261 -KLILNSIASDQCTDKDDLNLLQEKLKKQ---L--SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ-G 333 (779)
Q Consensus 261 -~~il~~l~~~~~~~~~~~~~~~~~l~~~---l--~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~ 333 (779)
......+...........+.....+... . .+.+-+||+||+..-.......+...+......+++|+||... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 0000000000000011122222222221 1 2345589999995443333444444443333456777777543 2
Q ss_pred hHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 334 VAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 334 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
+...+ .....+.+.+++.++...++.+.+..... .. ..+..+.+++.++|.+-.+...
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~~---~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-DY---DDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 22222 22356788999999998888876533221 11 2356778888998887655443
No 61
>PF13173 AAA_14: AAA domain
Probab=98.44 E-value=3.8e-07 Score=82.38 Aligned_cols=119 Identities=20% Similarity=0.157 Sum_probs=76.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
+++.|.|+.|+|||||+++++.+.. ....+++++..+....... ..+ ..+.+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhh-hHHHHHHhhccC
Confidence 6899999999999999999987432 2234556655443221100 000 233333434447
Q ss_pred eEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhhHhhh------cccccccCCCCChHHH
Q 040735 293 KFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGVAETM------RAVSTKTLKELSDDDC 354 (779)
Q Consensus 293 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~------~~~~~~~l~~L~~~~~ 354 (779)
+.+|+||++.. ...|......+.+..+..+|++|+.+......- +....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999944 467877777776665678999999987655321 1234678899887663
No 62
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.6e-06 Score=95.70 Aligned_cols=195 Identities=19% Similarity=0.171 Sum_probs=111.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+++........... .......-..+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~-------pCg~C~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT-------PCGVCSSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC-------CCCCchHHHHHh
Confidence 468999999999999886432 13456899999999999999998632111100000 000000000000
Q ss_pred HH-------hhcCCCCCcccHHHHHHHHHH-HhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCc-hhhH
Q 040735 265 NS-------IASDQCTDKDDLNLLQEKLKK-QLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRN-QGVA 335 (779)
Q Consensus 265 ~~-------l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~ 335 (779)
.. +.........++.++.+.+.. ...+++-++|||++........+.++..+-......++|++|.+ ..+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 00 000000011222223322221 12467779999999877777777777766554445665555544 4444
Q ss_pred hh-hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 336 ET-MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 336 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
.. ......|.+.+|+.++....+.+.+-.... ....+....|++.++|.|--+..+
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 32 223468999999999999988775532211 112356788999999988644433
No 63
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=9.3e-07 Score=98.07 Aligned_cols=199 Identities=18% Similarity=0.155 Sum_probs=112.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++.......+....|.|.+... +..-...-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 368999999999988886532 23567899999999999999987643221222222232221100 000000000
Q ss_pred HHhhcCCCCCcccHHHHHHHHHH-HhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcC-chhhHhhh-ccc
Q 040735 265 NSIASDQCTDKDDLNLLQEKLKK-QLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHR-NQGVAETM-RAV 341 (779)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR-~~~v~~~~-~~~ 341 (779)
..+.........++.++.+.+.. -..+++-++|+|+++......++.+...+......+.+|++|. ...+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 00010100011122222222221 1235667999999977666677777777665444555555554 33333322 224
Q ss_pred ccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 040735 342 STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 393 (779)
Q Consensus 342 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 393 (779)
..+++.+++.++....+.+.+-.... . ...+....|++.++|.+--+.
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi-~---i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGR-E---AEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 67899999999999999886643221 1 123567889999999986553
No 64
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.43 E-value=4e-07 Score=94.22 Aligned_cols=290 Identities=17% Similarity=0.174 Sum_probs=177.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCC-CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDF-DVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL 289 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 289 (779)
..+.+.++|.|||||||++-.+.. +..-|....|+..-.+. +...+.-.....++.... +-+.....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~----~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ----PGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc----cchHHHHHHHHHH
Confidence 358999999999999999977764 56678665554444444 444444444444655432 1223344556666
Q ss_pred CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhhHhhhcccccccCCCCChH-HHHHHHHHhhcCCCC-
Q 040735 290 SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGVAETMRAVSTKTLKELSDD-DCLRVLIQHSLGARD- 367 (779)
Q Consensus 290 ~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~a~~~~~- 367 (779)
.+++.++|+||-..- ...-..+...+..+...-.|+.|+|..... .......+++|+.. ++.++|...+.....
T Consensus 86 ~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 788999999997221 122233444455555566788888876432 34456778888865 788888776643221
Q ss_pred CCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhhhhccccc-------CCCCchHHHHHhhcCCChh
Q 040735 368 FNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEFVLNANIWDLQE-------DKCDIVPALRVSYHFLPPQ 440 (779)
Q Consensus 368 ~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~-------~~~~i~~~l~~sy~~L~~~ 440 (779)
......-.....+|.++.+|.|++|...+...+.-. ..+-...++.....+.. .+....+.+.+||.-|...
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 112233346788999999999999999998887652 22222222221111111 1234678899999999999
Q ss_pred hHhHhhhhccCCCCCccCHHHHHHHHHHcCCccCCCCCCCHHHHHHHHHHHHhhCccccccCC-CCCcEEecccHHHHHH
Q 040735 441 LKQCFAYFSLFPKDYDFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLVQQSSK-NASRFVMHDLINDLSR 519 (779)
Q Consensus 441 ~k~cfl~ls~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~-~~~~~~~Hdlv~~~a~ 519 (779)
.+-.|..++.|...|... ...|.+-|--. ....-....-+..+++.+++...+. +...|+.-+-++.|+.
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999998877554 33454543211 0112233344667788887754332 2334555555555554
Q ss_pred Hh
Q 040735 520 WA 521 (779)
Q Consensus 520 ~~ 521 (779)
.+
T Consensus 312 ae 313 (414)
T COG3903 312 AE 313 (414)
T ss_pred HH
Confidence 44
No 65
>PRK04195 replication factor C large subunit; Provisional
Probab=98.43 E-value=9.5e-06 Score=90.80 Aligned_cols=247 Identities=18% Similarity=0.139 Sum_probs=135.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+..++.+.+|+..... +...+.+.|+|++|+||||+|+.++++.. |+ .+-++.+...+. ..+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHHH
Confidence 4699999999999999975432 12267899999999999999999988431 22 222333332222 2222222
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh----hhhhhhcccCCCCCCCcEEEEEcCchh-hHh-hh
Q 040735 265 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY----NSWRALSCPFGAGAFGSKIVVTHRNQG-VAE-TM 338 (779)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~----~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~-~~ 338 (779)
....... .....++-+||+|++..-.. ..+..+...+.. .+..||+|+.+.. ... .+
T Consensus 86 ~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 86 GEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 2221110 00113678999999965321 223444443332 2345666665431 111 11
Q ss_pred -cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcCC---CChhHHHHHHhh
Q 040735 339 -RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGK---DDLNDWEFVLNA 414 (779)
Q Consensus 339 -~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~---~~~~~w~~~l~~ 414 (779)
.....+.+.+++.++....+.+.+..... ..+ .+....|++.++|..-.+......+... -+.+....+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGI-ECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 22357889999999998888776543222 222 3667889999999877665544444332 12222222211
Q ss_pred hhcccccCCCCchHHHHHhhc-CCChhhHhHhhhhccCCCCCccCHHHHHHHHHHcCCccC
Q 040735 415 NIWDLQEDKCDIVPALRVSYH-FLPPQLKQCFAYFSLFPKDYDFQEEEIILLWTAEGFLDQ 474 (779)
Q Consensus 415 ~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cfl~ls~fp~~~~i~~~~li~~W~aeg~i~~ 474 (779)
......++.++..-+. .-+......+.. ..++. ..+-.|+.|.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1122345666665554 222223222221 22333 34678999998754
No 66
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=5.4e-06 Score=92.25 Aligned_cols=193 Identities=18% Similarity=0.153 Sum_probs=110.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+...+.|..++.... -...+.++|+.|+||||+|+.+.+...... ++.. .+......-+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 468999999999999996443 246778999999999999998875321100 0000 0000000001110
Q ss_pred HHhhc-----CCCCCcccHHHHHHHHHH----HhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch-hh
Q 040735 265 NSIAS-----DQCTDKDDLNLLQEKLKK----QLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ-GV 334 (779)
Q Consensus 265 ~~l~~-----~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v 334 (779)
..-.. ... .....++..+.+.. -..++.-++|+|++..-+....+.+...+.....+..+|++|.+. .+
T Consensus 83 ~g~hpDviEIDAA-s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 83 EGRFIDLIEIDAA-SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred cCCCCceEEeccc-ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 00000 000 01122222222211 123566799999997666566666766665544556777766553 33
Q ss_pred Hhh-hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 040735 335 AET-MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 394 (779)
Q Consensus 335 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 394 (779)
... ......+++.+++.++....+.+.+-.... ....+....|++.++|.+-.+..
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 222 233468899999999999888776533221 12235577889999998855443
No 67
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=7.7e-06 Score=90.84 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=111.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+.+.......-.... + .+........-+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHH
Confidence 468999999999999986543 235678899999999999998865321100000000 0 000000000011110
Q ss_pred H-------HhhcCCCCCcccHHHHHHHHHHH----hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcE-EEEEcCch
Q 040735 265 N-------SIASDQCTDKDDLNLLQEKLKKQ----LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSK-IVVTHRNQ 332 (779)
Q Consensus 265 ~-------~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~-IivTtR~~ 332 (779)
. .+... ....++++.+.+... ..++.-++|||++...+...++.++..+-.-...+. |++||...
T Consensus 89 aG~hpDviEIdAa---s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 89 AGRFVDYIEMDAA---SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred cCCCCcceEeccc---ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 0 00000 111222222222221 145667999999987777777887777655444555 45555555
Q ss_pred hhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 333 GVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 333 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
.+...+ .....+.+..++.++..+.+.+.+-.... .. ..+....|++.++|.|.-...+
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi-~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI-AH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 554333 23468899999999999888765532211 11 1245678899999999655444
No 68
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=2.7e-07 Score=71.07 Aligned_cols=58 Identities=29% Similarity=0.369 Sum_probs=52.0
Q ss_pred CccceEeccccccccccc-ccccccccceeeccCCcchhhchh-hhcCccccceeecCCCc
Q 040735 621 KHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKLCK-NMGNLMKLHHLRNPNVH 679 (779)
Q Consensus 621 ~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 679 (779)
++|++|++++|+++.+|+ .|.++++|++|++++| .+..+|+ .|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999985 6789999999999998 7778865 58999999999999997
No 69
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.3e-05 Score=83.36 Aligned_cols=205 Identities=19% Similarity=0.184 Sum_probs=126.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC--ceEEEEeCCCCCHHHHHHHH
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQ--IKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i 263 (779)
.+.+|+.+++++...|...-. +..+.-+.|+|.+|+|||+.++.+... +..... ..++|++....+..+++..|
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 489999999999998875532 223344899999999999999999984 333321 16889999999999999999
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhC--CCeEEEEEeCCcCCChhhhhhhcccCCCCCC-CcE--EEEEcCchhhHhhh
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLKKQLS--GKKFLVVLDDVWNENYNSWRALSCPFGAGAF-GSK--IVVTHRNQGVAETM 338 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~--IivTtR~~~v~~~~ 338 (779)
+.+++.... ......+..+.+.+.+. ++.+++|||++..-....-+.+...+..... .++ +|..+.+......+
T Consensus 94 ~~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 94 LNKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999974433 45556666777777774 5889999999943111100122222222111 343 33344443333222
Q ss_pred c-------ccccccCCCCChHHHHHHHHHhhcCCC-CCCCChhHHHHHHHHHHHcCC-ChHHHHHH
Q 040735 339 R-------AVSTKTLKELSDDDCLRVLIQHSLGAR-DFNIPQSLKEVAEKIVKKCKG-LPLAAKTL 395 (779)
Q Consensus 339 ~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~-~~~~~~~~~~~~~~I~~~c~G-~PLai~~~ 395 (779)
. ....+..+|-+.+|-..++..++-..- .....+..-+++..++..-+| --.||..+
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 1 113367888999999999988764221 112233333444444444443 33444443
No 70
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.37 E-value=1.2e-05 Score=77.39 Aligned_cols=182 Identities=19% Similarity=0.221 Sum_probs=94.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+|||.+.-++.+.-++..... ..+.+..+.+||++|+||||||.-+.+ .....|. +.+.. ..+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~-~i~--------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGP-AIE--------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECC-C-----------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccch-hhh---------
Confidence 4799999888877655543211 224577899999999999999999988 3444442 22211 111
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCC--------CCCC-----------cEE
Q 040735 265 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGA--------GAFG-----------SKI 325 (779)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~--------~~~g-----------s~I 325 (779)
...++...+.. + +++-+|++|.++.-+..+-+.+...+-+ .+++ +-|
T Consensus 88 ------------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 88 ------------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp ------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred ------------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 11112222211 1 2345677788865443333322221111 1111 234
Q ss_pred EEEcCchhhHhhhccc--ccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhc
Q 040735 326 VVTHRNQGVAETMRAV--STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLR 400 (779)
Q Consensus 326 ivTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~ 400 (779)
=-|||...+...+..- ...+++..+.+|-..+..+.+..-. -+-..+.+.+|+++|.|-|--..-+-+..+
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 5588876555444332 2347999999999999987663322 233457899999999999976555544443
No 71
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.36 E-value=4e-07 Score=99.95 Aligned_cols=146 Identities=30% Similarity=0.369 Sum_probs=100.1
Q ss_pred cceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccce
Q 040735 569 RLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHT 648 (779)
Q Consensus 569 ~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~ 648 (779)
+|+.|.+.++.. ..+|..+..++.|+.|++++|+++.+|...+.+..|+.|++++|++..+|..+..+.+|++
T Consensus 141 nL~~L~l~~N~i-------~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~ 213 (394)
T COG4886 141 NLKELDLSDNKI-------ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEE 213 (394)
T ss_pred hcccccccccch-------hhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhh
Confidence 677777766541 2333455677888888888888888877666777888888888888888877767777888
Q ss_pred eeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcc
Q 040735 649 ILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISK 727 (779)
Q Consensus 649 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~ 727 (779)
|.+++| ....+|..+.++.++..|.+.+|. +..+|..++.+++|++|++...... .+..+..+.+|+ .|.+.+
T Consensus 214 l~~~~N-~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~i~---~i~~~~~~~~l~-~L~~s~ 286 (394)
T COG4886 214 LDLSNN-SIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQIS---SISSLGSLTNLR-ELDLSG 286 (394)
T ss_pred hhhcCC-cceecchhhhhcccccccccCCce-eeeccchhccccccceecccccccc---ccccccccCccC-EEeccC
Confidence 888877 455666667777777777777777 5555666777777777765444332 233355566666 666654
No 72
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.34 E-value=7.9e-07 Score=89.16 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=61.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCC--CCHHHHHHHHHHHhhcCCCCCccc-----HHHHHHHH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFED--FDVFRVSKLILNSIASDQCTDKDD-----LNLLQEKL 285 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~-----~~~~~~~l 285 (779)
..++|+|++|+|||||++.++++.... +|+..+|+++.+. +++.++++.+...+-......+.. .....+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999975544 8999999997776 788999988844333222211110 11122222
Q ss_pred HHH-hCCCeEEEEEeCCcC
Q 040735 286 KKQ-LSGKKFLVVLDDVWN 303 (779)
Q Consensus 286 ~~~-l~~k~~LlVlDdvw~ 303 (779)
... -.+++.++++|++..
T Consensus 96 ~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 96 KRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHCCCCEEEEEECHHH
Confidence 222 258999999999943
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=98.34 E-value=9.8e-06 Score=85.72 Aligned_cols=183 Identities=15% Similarity=0.152 Sum_probs=103.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCc-eEEEEeCCCCCHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQI-KSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i 263 (779)
.+++|.+..++.|..++... +.+.+.++|++|+||||+|+.+++.. ....|.. .+-+..+...... ..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 35889998888888877533 23457799999999999999988632 1112211 1111222211111 22222
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch-hhHhhh-ccc
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ-GVAETM-RAV 341 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~ 341 (779)
+..+..... . .-.++.-++++|++..-.......+...+......+++|+++... .+...+ ...
T Consensus 85 i~~~~~~~~-~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 85 IKMFAQKKV-T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHhccc-c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 222111000 0 002456799999996655444445544443333456777766543 221111 123
Q ss_pred ccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 040735 342 STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 393 (779)
Q Consensus 342 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 393 (779)
..+++.+++.++....+...+-.... ..+ .+....|++.++|..-.+.
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi-~i~---~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKV-PYV---PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHH
Confidence 57899999999999888876643221 122 2557788899998774443
No 74
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.2e-05 Score=89.58 Aligned_cols=183 Identities=20% Similarity=0.149 Sum_probs=109.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc-------------------cccCce
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQ-------------------RHFQIK 245 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 245 (779)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++...-. ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 368999999999999886432 23567899999999999999987521100 012222
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcE
Q 040735 246 SWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSK 324 (779)
Q Consensus 246 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 324 (779)
+++....... ..+...+.+.+... ..+++-++|+|++...+...++.+...+-.....+.
T Consensus 91 ieidaas~~g-------------------vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 91 IEIDAASRTG-------------------VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EEeecccccC-------------------HHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 2222211111 11222233322211 245677999999976666667777776665544555
Q ss_pred EE-EEcCchhhHhh-hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChH-HHHHH
Q 040735 325 IV-VTHRNQGVAET-MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTL 395 (779)
Q Consensus 325 Ii-vTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~ 395 (779)
+| +||....+... ......+++.+++.++....+.+.+-.... ....+....|++.++|.+- |+..+
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55 55554444433 223478999999999988777764432211 1123556778899999764 44444
No 75
>PRK08727 hypothetical protein; Validated
Probab=98.33 E-value=9.2e-06 Score=81.52 Aligned_cols=148 Identities=16% Similarity=0.102 Sum_probs=87.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
..+.|+|++|+|||+|++.+++. .......+.+++..+ ....+. +.+. .+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~------------------~~~~-~l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR------------------DALE-AL-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH------------------HHHH-HH-hc
Confidence 46999999999999999999873 233333445665322 111110 1111 11 12
Q ss_pred eEEEEEeCCcCCC-hhhhhh-hcccCCC-CCCCcEEEEEcCch---------hhHhhhcccccccCCCCChHHHHHHHHH
Q 040735 293 KFLVVLDDVWNEN-YNSWRA-LSCPFGA-GAFGSKIVVTHRNQ---------GVAETMRAVSTKTLKELSDDDCLRVLIQ 360 (779)
Q Consensus 293 ~~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 360 (779)
.-+||+||+.... ...|.. +...+.. ...|..||+|++.. .+...+.....+++++++.++-..++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999995321 122332 2222221 12356799999853 2223333456889999999999999998
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHHcCCChHHH
Q 040735 361 HSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 392 (779)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 392 (779)
.+....- .. -.+....|++.++|..-.+
T Consensus 174 ~a~~~~l-~l---~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGL-AL---DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCC-CC---CHHHHHHHHHhCCCCHHHH
Confidence 7653221 22 2366778888888776555
No 76
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=1.5e-05 Score=85.75 Aligned_cols=184 Identities=14% Similarity=0.082 Sum_probs=106.9
Q ss_pred CccccchhhHHHHHHHHhcCCCC----CCCCcEEEEEEcCCCCcHHHHHHHHhcccccc------------------ccc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSR----ADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQ------------------RHF 242 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F 242 (779)
.+++|-+..++.|..++...... +..-...+.++|++|+|||++|..+.+..--. ..+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35889999999999999754310 01124668899999999999999886521100 001
Q ss_pred CceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCC
Q 040735 243 QIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKK-QLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAF 321 (779)
Q Consensus 243 ~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 321 (779)
+...++......- ...++.++.+.+.. -..+++-++|+|++...+....+.+...+-....
T Consensus 85 pD~~~i~~~~~~i------------------~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 85 PDVRVVAPEGLSI------------------GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CCEEEeccccccC------------------CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 1111221110000 11111222222211 1134556888899976665566666666655445
Q ss_pred CcEEEEEcCc-hhhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 322 GSKIVVTHRN-QGVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 322 gs~IivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
+..+|++|.+ ..+...+ .....+.+.+++.++....+.+.. ..+ .+.+..++..++|.|.....+
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~------~~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD------GVD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc------CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 5666665555 3444332 234688999999999998886432 111 245778899999999755444
No 77
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=1.6e-05 Score=87.85 Aligned_cols=196 Identities=20% Similarity=0.169 Sum_probs=111.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCc-eEEEEeCCCCCHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQI-KSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i 263 (779)
.+++|-+..+..+...+.... -...+.++|++|+||||+|+.+++.......... ..+..+. ....-..+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~----~C~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE----QCTNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC----CChHHHHH
Confidence 368999999998888775432 2357889999999999999999763211110000 0000000 00000011
Q ss_pred HHH-------hhcCCCCCcccHHHHHHHHHH-HhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEE-EEcCchhh
Q 040735 264 LNS-------IASDQCTDKDDLNLLQEKLKK-QLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIV-VTHRNQGV 334 (779)
Q Consensus 264 l~~-------l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~v 334 (779)
... +.........++..+.+.... -+.+++-++|+|+++.-+...++.+...+......+.+| .||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 000 000011011222222222211 124567799999998776677888877666554555655 45555555
Q ss_pred Hhhhc-ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 040735 335 AETMR-AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 393 (779)
Q Consensus 335 ~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 393 (779)
...+. ....+++.+++.++....+...+-.... . -..+....|++.++|.+--+.
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi-~---ie~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENL-K---TDIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 44332 3357889999999999999877643321 1 122556778899999875443
No 78
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.32 E-value=7.1e-06 Score=93.81 Aligned_cols=171 Identities=21% Similarity=0.231 Sum_probs=104.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccc---CceEEEEeCCC---CCHHHH
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHF---QIKSWTCVFED---FDVFRV 259 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~---~~~~~~ 259 (779)
.++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred hceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 5889999999888777432 34579999999999999999998754322222 12345544321 122222
Q ss_pred HHHH---------------HHHhhcCC-----------------CCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChh
Q 040735 260 SKLI---------------LNSIASDQ-----------------CTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYN 307 (779)
Q Consensus 260 ~~~i---------------l~~l~~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~ 307 (779)
...+ +...+... ..+..+ ...+..+.+.+.++++.++-|+.|..+..
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 1111 11111100 001111 23577888888889999998888776666
Q ss_pred hhhhhcccCCCCCCCcEEEE--EcCchhh-Hhhh-cccccccCCCCChHHHHHHHHHhhc
Q 040735 308 SWRALSCPFGAGAFGSKIVV--THRNQGV-AETM-RAVSTKTLKELSDDDCLRVLIQHSL 363 (779)
Q Consensus 308 ~~~~l~~~l~~~~~gs~Iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~ 363 (779)
.|+.+...+....+...+++ ||++... ...+ .....+.+.+++.+|.+.++.+.+-
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 78887766666555555555 5664431 1111 1224678899999999999988653
No 79
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.31 E-value=1.6e-05 Score=84.46 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=103.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEe--CCCCCHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCV--FEDFDVFRVSKL 262 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~ 262 (779)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+.+... ...+. ..++.+ +...... ....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHH
Confidence 45899999999999998543 234579999999999999999987321 11121 112222 1211111 1111
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch-hhHhhh-cc
Q 040735 263 ILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ-GVAETM-RA 340 (779)
Q Consensus 263 il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~-~~ 340 (779)
.+..+..... .....+-++++|++..-.......+...+......+.+|+++... .+.... ..
T Consensus 88 ~i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 88 KIKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 1111111000 001345689999985544334445554444434456777766432 121111 12
Q ss_pred cccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 040735 341 VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 394 (779)
Q Consensus 341 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 394 (779)
...+++.+++.++....+...+..... .. ..+....+++.++|.+--+..
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~-~i---~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGI-EI---TDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 346889999999998888876643221 11 235677889999998865443
No 80
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=2.3e-05 Score=83.50 Aligned_cols=199 Identities=15% Similarity=0.110 Sum_probs=111.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEE---EEeCCCCCHHHHH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSW---TCVFEDFDVFRVS 260 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w---v~~~~~~~~~~~~ 260 (779)
..+++|.+..++.+.+.+..+. -...+.++|+.|+||+|+|..+.+..--......... ............-
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 3568999999999999886543 2356889999999999999877652110000000000 0000000000011
Q ss_pred HHHHHHhhcC---------CC----CCcccHHHHHHHHHHHh-----CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCC
Q 040735 261 KLILNSIASD---------QC----TDKDDLNLLQEKLKKQL-----SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFG 322 (779)
Q Consensus 261 ~~il~~l~~~---------~~----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 322 (779)
+.+...-... .. ...-.++++. .+.+.+ .+++.++|+||+...+......+...+.....+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111000000 00 0111233322 233333 256779999999877777777777776655456
Q ss_pred cEEEEEcCch-hhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 323 SKIVVTHRNQ-GVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 323 s~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
+.+|++|.+. .+...+ .....+.+.+++.++..+++...... ..+ +....++..++|.|.....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 6666666654 343332 23468899999999999999775311 111 222678999999998665553
No 81
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.5e-05 Score=89.58 Aligned_cols=194 Identities=16% Similarity=0.180 Sum_probs=107.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+......... + ........-+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~----~pCg~C~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---G----EPCGVCQSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---C----CCCcccHHHHHHh
Confidence 469999999999999986432 245788999999999999998876311110000 0 0000000000000
Q ss_pred HH-----hhcCCCCCcccHHHHHHHHHHH----hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCc-hhh
Q 040735 265 NS-----IASDQCTDKDDLNLLQEKLKKQ----LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRN-QGV 334 (779)
Q Consensus 265 ~~-----l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v 334 (779)
.. +..... ....++.+.+.+... ..+++-++|+|++...+......+...+-.....+++|++|.+ ..+
T Consensus 84 ~g~~~DvlEidaA-s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 84 AGRYVDLLEIDAA-SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred ccCccceEEEecc-ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 00 000000 111122222222111 2356679999999655544555565555443345566666544 333
Q ss_pred Hhh-hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 335 AET-MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 335 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
... .+....+.+.+++.++....+.+.+-.... . -..+....|++.++|.+.-+..+
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~---id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-A---YEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHHhCCCHHHHHHH
Confidence 322 123357888999999999888776543221 1 12356788999999998554443
No 82
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=2.9e-05 Score=82.31 Aligned_cols=199 Identities=18% Similarity=0.188 Sum_probs=114.4
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc--ccCceEEEEeCCCCCHHHHH
Q 040735 183 NEAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQR--HFQIKSWTCVFEDFDVFRVS 260 (779)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~~~~~~~~~~~ 260 (779)
....++|.+...+.+...+..+. -...+.|+|+.|+||||+|..+.+..--.. .+... ............
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHH
Confidence 34568999999999999986443 245788999999999999998876321100 01100 000111111122
Q ss_pred HHHHHH-------hhcCCC------CCcccHHHHHHHHHHHh-----CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCC
Q 040735 261 KLILNS-------IASDQC------TDKDDLNLLQEKLKKQL-----SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFG 322 (779)
Q Consensus 261 ~~il~~-------l~~~~~------~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 322 (779)
+.+... +..+.. ...-.++++. .+.+.+ .+++-++|+|++...+....+.+...+......
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 222211 100000 0111233332 333333 356779999999776666667776666544334
Q ss_pred cE-EEEEcCchhhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 323 SK-IVVTHRNQGVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 323 s~-IivTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
.. |++|++...+...+ .....+.+.+++.++...++.+..... . ...+....|++.++|.|.....+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44 45554444443222 233689999999999999998743211 1 113456789999999998665544
No 83
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=4.4e-06 Score=90.39 Aligned_cols=197 Identities=17% Similarity=0.074 Sum_probs=111.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+..+..|..++.... -...+.++|++|+||||+|+.+.+..... .... ...+....+-..+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccCC
Confidence 468999999999999886432 12467899999999999999997632111 0000 000000101111111000
Q ss_pred HH---hhcCCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEE-EEcCchhhHhhh-
Q 040735 265 NS---IASDQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIV-VTHRNQGVAETM- 338 (779)
Q Consensus 265 ~~---l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~v~~~~- 338 (779)
.. +.........++.++.+.+... ..++.-++|+|++..-+...++.+...+-.......+| .||....+...+
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 00 0000010122233333333321 24566799999998777777888877665433345544 455544443332
Q ss_pred cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 040735 339 RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 393 (779)
Q Consensus 339 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 393 (779)
.....|.+.+++.++....+.+.+-.... . -..+....|++.++|.+--+.
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi-~---~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENV-Q---YDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCChHHHHH
Confidence 23367899999999998888776533221 1 123567889999999985433
No 84
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.2e-05 Score=88.61 Aligned_cols=195 Identities=17% Similarity=0.174 Sum_probs=109.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccc--CceEEEEeCCCCCHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHF--QIKSWTCVFEDFDVFRVSKL 262 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~ 262 (779)
.++||-+..++.|.+++.... -...+.++|+.|+||||+|+.+.+..-..... ...-. .++.....-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 468999999999999886543 23567899999999999999885421100000 00000 00011111111
Q ss_pred HHH-------HhhcCCCCCcccHHHHHHHHHHH----hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEE-cC
Q 040735 263 ILN-------SIASDQCTDKDDLNLLQEKLKKQ----LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVT-HR 330 (779)
Q Consensus 263 il~-------~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivT-tR 330 (779)
|-. .+... ....+++..+.+... ..++.-++|||+++..+...++.+...+......+.+|++ |.
T Consensus 87 i~~g~h~D~~eldaa---s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 87 IDSGRFVDYTELDAA---SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHcCCCCceeecCcc---cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 100 00000 111222222222211 1244568999999877777777777766654445555554 44
Q ss_pred chhhHhh-hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 331 NQGVAET-MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 331 ~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
...+... ......+++.+++.++....+.+.+...+. .. ..+....|++.++|.+--+..+
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-~i---e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-PA---EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 4444322 233468999999999998888876533221 11 2356778889999988555443
No 85
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.26 E-value=3.5e-05 Score=83.27 Aligned_cols=183 Identities=17% Similarity=0.159 Sum_probs=107.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc--c------------------ccCc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQ--R------------------HFQI 244 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~------------------~F~~ 244 (779)
.+++|.+..++.+..++.... -...+.++|++|+||||+|+.+.....-. . +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 468999999999999886432 23577899999999999998886531100 0 111
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCc
Q 040735 245 KSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGS 323 (779)
Q Consensus 245 ~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 323 (779)
.+++........ .+...+.+.+... ..+++-++|+|++..-.......+...+......+
T Consensus 88 ~~~~~~~~~~~~-------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 88 VIEIDAASNNGV-------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred EEEeeccccCCH-------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 122211111111 1111222221111 12455689999985544445566666654444456
Q ss_pred EEEEEcCchh-hHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 324 KIVVTHRNQG-VAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 324 ~IivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
.+|++|.+.. +...+ .....+++.+++.++....+...+-.... .. -.+.+..+++.++|.|..+....
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i---~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KI---EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCChHHHHHHH
Confidence 6666665443 33222 22357788999999998888876533221 11 13667888999999987665444
No 86
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.26 E-value=3e-05 Score=75.35 Aligned_cols=90 Identities=20% Similarity=0.250 Sum_probs=62.2
Q ss_pred CCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch-hhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCC
Q 040735 291 GKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ-GVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDF 368 (779)
Q Consensus 291 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 368 (779)
+.+-++|+|++..-....++.+...+......+.+|++|++. .+...+ .....+.+.+++.++....+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 566789999996655556677776665544556677666543 332222 23368999999999998888776 1
Q ss_pred CCChhHHHHHHHHHHHcCCChH
Q 040735 369 NIPQSLKEVAEKIVKKCKGLPL 390 (779)
Q Consensus 369 ~~~~~~~~~~~~I~~~c~G~PL 390 (779)
.. .+.+..|++.++|.|.
T Consensus 169 -i~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 -IS---EEAAELLLALAGGSPG 186 (188)
T ss_pred -CC---HHHHHHHHHHcCCCcc
Confidence 11 3568899999999885
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.6e-05 Score=89.76 Aligned_cols=196 Identities=19% Similarity=0.151 Sum_probs=111.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.++||.+..++.|...+.... -...+.++|+.|+||||+|+.+.+..--...+. ..+......-+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 468999999999998886432 234568999999999999999876321110000 00111111111111
Q ss_pred HH-------hhcCCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEE-EcCchhhH
Q 040735 265 NS-------IASDQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVV-THRNQGVA 335 (779)
Q Consensus 265 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~v~ 335 (779)
.. +........++..++.+.+... ..+++-++|+|++...+....+.+...+-......++|+ ||....+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 0000000112222222222211 246677999999977766777777766655444555555 44444444
Q ss_pred hh-hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 336 ET-MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 336 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
.. ......+.+.+++.++....+.+.+-.... ....+....|++.++|.+--+..+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32 223468999999999999888775422211 1123556789999999886544443
No 88
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.25 E-value=1.5e-05 Score=92.08 Aligned_cols=173 Identities=23% Similarity=0.261 Sum_probs=96.7
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 185 AEVYGREKDKE---AIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 185 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
.+|+|.+..+. .+...+.. .+...+.++|++|+||||||+.+++. ...+| +.+.....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f-----~~lna~~~------ 88 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHF-----SSLNAVLA------ 88 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcc-----eeehhhhh------
Confidence 35889887764 45555533 23457789999999999999999873 33333 11111000
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHh--CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEE--EcCchh--hH
Q 040735 262 LILNSIASDQCTDKDDLNLLQEKLKKQL--SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVV--THRNQG--VA 335 (779)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TtR~~~--v~ 335 (779)
...+...........+ .+++.+|||||++.-....++.+...+. .|+.++| ||.+.. +.
T Consensus 89 ------------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 89 ------------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred ------------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 0001111122222222 2467899999997655555666654333 2455555 344431 21
Q ss_pred hhh-cccccccCCCCChHHHHHHHHHhhcCCC---CCCCChhHHHHHHHHHHHcCCChHH
Q 040735 336 ETM-RAVSTKTLKELSDDDCLRVLIQHSLGAR---DFNIPQSLKEVAEKIVKKCKGLPLA 391 (779)
Q Consensus 336 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~---~~~~~~~~~~~~~~I~~~c~G~PLa 391 (779)
... .....+.+++++.++...++.+.+-... ......-..+....|++.+.|..-.
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 111 1235789999999999999887553100 0001112235667788888887543
No 89
>PRK09087 hypothetical protein; Validated
Probab=98.24 E-value=2.1e-05 Score=78.19 Aligned_cols=142 Identities=17% Similarity=0.166 Sum_probs=86.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSG 291 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 291 (779)
.+.+.|+|++|+|||+|++.++.... ..+++.. .....++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~----------------------~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA----------------------AAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh----------------------hhc
Confidence 36789999999999999998886321 1122221 111111111 111
Q ss_pred CeEEEEEeCCcCC--ChhhhhhhcccCCCCCCCcEEEEEcCc---------hhhHhhhcccccccCCCCChHHHHHHHHH
Q 040735 292 KKFLVVLDDVWNE--NYNSWRALSCPFGAGAFGSKIVVTHRN---------QGVAETMRAVSTKTLKELSDDDCLRVLIQ 360 (779)
Q Consensus 292 k~~LlVlDdvw~~--~~~~~~~l~~~l~~~~~gs~IivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 360 (779)
-+|++||+... +...+-.+...+.. .|..||+|++. +.+...+.....+++++++.++-..++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 27888999432 12222222222222 36679998873 33444555667899999999999999998
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 361 HSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
.+-... ...+ +++..-|++.+.|..-++..+.
T Consensus 165 ~~~~~~-~~l~---~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 165 LFADRQ-LYVD---PHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHcC-CCCC---HHHHHHHHHHhhhhHHHHHHHH
Confidence 774321 1222 3677788888888877766543
No 90
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=1.4e-05 Score=88.86 Aligned_cols=196 Identities=15% Similarity=0.170 Sum_probs=107.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|++..++.+..++.... -...+.++|+.|+||||+|+.+.+...- .-|... .........+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C------~~~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINC------LNPKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcC------CCCCCC-CCCcccHHHHHHH
Confidence 468999999999999885433 2357889999999999999998763211 111110 0111111111111
Q ss_pred HHh-------hcCCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEc-CchhhH
Q 040735 265 NSI-------ASDQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTH-RNQGVA 335 (779)
Q Consensus 265 ~~l-------~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~v~ 335 (779)
... .........+++.+...+... ..+++-++|+|++..-+...+..+...+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 110 000000111122222222111 12344579999997655566667766655443445555444 444443
Q ss_pred hh-hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChH-HHHHHH
Q 040735 336 ET-MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLG 396 (779)
Q Consensus 336 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~ 396 (779)
.. ......+++.+++.++....+...+-.... ..+ .+.+..+++.++|.+- |+..+-
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is---~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIE---DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 32 223468899999999999888876532221 111 2557788999999765 444433
No 91
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.7e-05 Score=86.82 Aligned_cols=183 Identities=15% Similarity=0.101 Sum_probs=106.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc-------------------cccCce
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQ-------------------RHFQIK 245 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 245 (779)
.++||-+..++.|..++.... -...+.++|++|+||||+|+.+.+..--. +.|...
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999996443 23467899999999999999887532111 111112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEE
Q 040735 246 SWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKI 325 (779)
Q Consensus 246 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I 325 (779)
+.+.......+.++ +++++.+.. .-..++.-++|+|++..-+....+.+...+......+++
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~-----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPY-----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhh-----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 22222211111111 122221111 011356668999999776666777776666554445666
Q ss_pred EEEc-CchhhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 040735 326 VVTH-RNQGVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 394 (779)
Q Consensus 326 ivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 394 (779)
|++| ....+...+ .....+++.+++.++....+...+-.... .. ..+....|++.++|.+--+..
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~~---~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV-EF---ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHHHH
Confidence 6554 433433222 23367889999999887766655432221 11 124566788899998855443
No 92
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=4.8e-05 Score=83.48 Aligned_cols=182 Identities=16% Similarity=0.117 Sum_probs=108.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc------cc-------------ccccCce
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDD------RV-------------QRHFQIK 245 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~------~~-------------~~~F~~~ 245 (779)
.++||.+..++.+...+..+. -...+.++|+.|+||||+|+.+.... .. ...+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999998888888875432 23478899999999999998886411 00 0111222
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEE
Q 040735 246 SWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKI 325 (779)
Q Consensus 246 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I 325 (779)
+.++.+....+.+ .+.+++..... -..++.-++|+|++..-+....+.+...+-...+.+.+
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~-----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL-----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc-----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 3333322222211 11222211100 01345668999999665555666776666555555666
Q ss_pred EEEc-CchhhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 040735 326 VVTH-RNQGVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 393 (779)
Q Consensus 326 ivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 393 (779)
|++| ....+...+ .....+.+.+++.++....+.+.+..... . -..+....|++.++|.+-.+.
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~---i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-E---HDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 6555 444444333 23467899999999999888876643222 1 123556788999998875443
No 93
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=1.7e-06 Score=60.95 Aligned_cols=39 Identities=36% Similarity=0.521 Sum_probs=25.4
Q ss_pred CccEEEecCCCCCccCccccCCCccceEecccccccccc
Q 040735 599 RLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILP 637 (779)
Q Consensus 599 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp 637 (779)
+|++|++++|+|+.+|+.+++|++|++|++++|.|+++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566777777777777666677777777777777666554
No 94
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.18 E-value=3.9e-05 Score=77.09 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=89.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
+.+.|+|++|+|||+|++.+++.. ...-..+.++.+..... ...+..+.+ ..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~---------------------~~~~~~~~~----~~- 97 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW---------------------FVPEVLEGM----EQ- 97 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh---------------------hhHHHHHHh----hh-
Confidence 578999999999999999988732 22222344555432100 001111111 11
Q ss_pred eEEEEEeCCcCCC-hhhhhhhc-ccCCCC-CCC-cEEEEEcCch---------hhHhhhcccccccCCCCChHHHHHHHH
Q 040735 293 KFLVVLDDVWNEN-YNSWRALS-CPFGAG-AFG-SKIVVTHRNQ---------GVAETMRAVSTKTLKELSDDDCLRVLI 359 (779)
Q Consensus 293 ~~LlVlDdvw~~~-~~~~~~l~-~~l~~~-~~g-s~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 359 (779)
--+|++||+.... ...|.... ..+... ..| .++|+||+.. .+...+....++++.+++.++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2378999995421 13343321 222211 123 4789999854 233445555789999999999999988
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhh
Q 040735 360 QHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGL 398 (779)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 398 (779)
+++.... ... -+++..-|++.+.|..-.+..+-..
T Consensus 178 ~~a~~~~-~~l---~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 178 LRARLRG-FEL---PEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHcC-CCC---CHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 7664321 122 2367788888888877665554433
No 95
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3.5e-07 Score=94.38 Aligned_cols=205 Identities=16% Similarity=0.071 Sum_probs=124.5
Q ss_pred cccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCcc---CccccCCCccceEecccccccccccc--
Q 040735 565 SDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKL---PNEIGNLKHLRFLNLSRTNIQILPES-- 639 (779)
Q Consensus 565 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l---p~~~~~l~~L~~L~l~~n~i~~lp~~-- 639 (779)
.++++||...+.+... +..... ...-.|++++.|||++|-+... -.-...|++|+.|+|+.|++...-.+
T Consensus 118 sn~kkL~~IsLdn~~V---~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV---EDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred hhHHhhhheeecCccc---cccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 4778888887776541 111000 1233799999999999977643 24457899999999999998744332
Q ss_pred cccccccceeeccCCcchh-hchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhcccc
Q 040735 640 INSLYNLHTILLEDCRRLK-KLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMH 718 (779)
Q Consensus 640 ~~~L~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~ 718 (779)
-..+.+|+.|.|++|.... .+-.....+++|..|++..|.....--.....+..|++|++..++..+.....-...|+.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 2367899999999994332 223334577899999999995232222223456778888877666554433333344444
Q ss_pred cccee--EEcccCCCCCcch---hhhccCCCCCCCchHHH------HhccCCCCCCCCeEEEeecCCC
Q 040735 719 LQGTL--QISKLENVKDVGD---ASEAQLNTKPDFKIEIR------VLDMLKPHQKLEELTIAGYGGT 775 (779)
Q Consensus 719 L~~~L--~i~~~~~~~~~~~---~~~~~L~~l~~L~~~~~------~l~~l~~~~~L~~L~l~~~~~~ 775 (779)
|+ .| ..+++..+...+- .....+.+|++|+...+ .+..+..++||+.|.+.++.+.
T Consensus 273 L~-~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 273 LN-QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hh-hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 44 33 3333333322111 12345667777744333 3344455677888777776554
No 96
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=4.3e-05 Score=84.22 Aligned_cols=186 Identities=18% Similarity=0.209 Sum_probs=104.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc--c-----------------Cce
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRH--F-----------------QIK 245 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F-----------------~~~ 245 (779)
.++||.+.....|...+..+. -...+.++|++|+||||+|+.+.+....... + ...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468999988888888775432 2356789999999999999998763211100 0 011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcE
Q 040735 246 SWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKK-QLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSK 324 (779)
Q Consensus 246 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 324 (779)
..+..+..... .+...+.+.+.. -..+++-++|+|++..-.....+.+...+........
T Consensus 89 ~el~aa~~~gi-------------------d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 89 IELDAASNRGI-------------------DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred EEEeCcccCCH-------------------HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 11111111111 111111111111 1234667999999965444455556555544333444
Q ss_pred EEEEcCc-hhhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCC-hHHHHHHHhh
Q 040735 325 IVVTHRN-QGVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL-PLAAKTLGGL 398 (779)
Q Consensus 325 IivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~~~ 398 (779)
+|++|.+ ..+...+ .....+.+.+++.++....+.+.+..... .. ..+....|++.++|. +.++..+-.+
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i---~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EI---DREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4444433 3343332 23467889999999998888876643221 11 235567788878654 5666666543
No 97
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.17 E-value=3.8e-06 Score=87.73 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=59.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCC--CHHHHHHHHHHHhhcCCCCCcccHH-----HHHHHH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDF--DVFRVSKLILNSIASDQCTDKDDLN-----LLQEKL 285 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~-----~~~~~l 285 (779)
.-..|+|++|+||||||+++|++.... +|+..+||.+.+.. ++.++++.+...+-..+........ ...+.-
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999965544 89999999999887 6777777776332222221111111 111111
Q ss_pred HHH-hCCCeEEEEEeCCc
Q 040735 286 KKQ-LSGKKFLVVLDDVW 302 (779)
Q Consensus 286 ~~~-l~~k~~LlVlDdvw 302 (779)
... -.+++++|++|++.
T Consensus 249 e~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 249 KRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHcCCCEEEEEEChH
Confidence 111 26899999999994
No 98
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.17 E-value=2.3e-05 Score=78.70 Aligned_cols=152 Identities=18% Similarity=0.102 Sum_probs=85.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSG 291 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 291 (779)
.+.+.|+|++|+|||+||+.+++... ...+ ...+++..... .. + ... .
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~----~-------------------~~~-~ 89 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA----F-------------------DFD-P 89 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH----H-------------------hhc-c
Confidence 46789999999999999999987421 1111 23344332210 00 0 011 2
Q ss_pred CeEEEEEeCCcCCChhhhhhhcccCCCC-CCCc-EEEEEcCchhhH--------hhhcccccccCCCCChHHHHHHHHHh
Q 040735 292 KKFLVVLDDVWNENYNSWRALSCPFGAG-AFGS-KIVVTHRNQGVA--------ETMRAVSTKTLKELSDDDCLRVLIQH 361 (779)
Q Consensus 292 k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~IivTtR~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf~~~ 361 (779)
..-+||+||+..-....-..+...+... ..+. .+|+|++..... ..+.....+.+.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2347899999543222222333333221 1233 466666643211 12222367899999998877777654
Q ss_pred hcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhh
Q 040735 362 SLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 399 (779)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l 399 (779)
+-... ... -++....+++.+.|.+..+..+...+
T Consensus 170 ~~~~~-v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERG-LQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcC-CCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 32211 122 23667788889999998887776654
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.7e-05 Score=83.70 Aligned_cols=200 Identities=14% Similarity=0.128 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEE-eCCCCCHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTC-VFEDFDVFRVSKLI 263 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i 263 (779)
.+++|.+..++.|..++..+. -...+.++|++|+||||+|..+.+...-...+....|.. ...+......-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468999999999988885432 234578899999999999998876321111111001110 00111111111111
Q ss_pred HHHhhcC----CCCCcccHHHHHHHHHHHh-----CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEc-Cchh
Q 040735 264 LNSIASD----QCTDKDDLNLLQEKLKKQL-----SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTH-RNQG 333 (779)
Q Consensus 264 l~~l~~~----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~ 333 (779)
....... ........+++.+. .+.+ .+++-++|+|++..-....++.+...+......+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1100000 00011112333322 2222 3456689999996655567777777666554566665554 4444
Q ss_pred hHhhhc-ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 040735 334 VAETMR-AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 394 (779)
Q Consensus 334 v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 394 (779)
+...+. ....+++.+++.++....+...+-.... .-..+.+..|++.++|.+--+..
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 443322 2357889999999988887765532111 12236688899999998854443
No 100
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5e-05 Score=85.26 Aligned_cols=177 Identities=16% Similarity=0.146 Sum_probs=104.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc-------------------cccCce
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQ-------------------RHFQIK 245 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 245 (779)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+....-.. +.|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 368999999999999986433 23566799999999999999886532110 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH----hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCC
Q 040735 246 SWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQ----LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAF 321 (779)
Q Consensus 246 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 321 (779)
+++..+.. ...+++.+.+... ..+++-++|+|++...+....+.+...+.....
T Consensus 91 ~ei~~~~~----------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~ 148 (527)
T PRK14969 91 IEVDAASN----------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (527)
T ss_pred eEeecccc----------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCC
Confidence 22221111 1122222211111 135667999999976555556666666655444
Q ss_pred CcEEEEEc-CchhhHhh-hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHH
Q 040735 322 GSKIVVTH-RNQGVAET-MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 392 (779)
Q Consensus 322 gs~IivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 392 (779)
.+.+|++| ....+... ......+++.+++.++....+.+.+-.... . ...+....|++.++|.+--+
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~---~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-P---FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHH
Confidence 55555544 44333322 122367899999999998877765432211 1 12255678889999987533
No 101
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.08 E-value=3e-05 Score=83.71 Aligned_cols=181 Identities=15% Similarity=0.123 Sum_probs=98.8
Q ss_pred CCCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC
Q 040735 183 NEAEVYGREKDKEAIVELLLRDDS-------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD 255 (779)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 255 (779)
...++.|++..+++|.+.+...-. -+-..++-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 345789999999999988743211 01123456899999999999999999873 33333 22211
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC-----------hh---hhhhhcccCCC--C
Q 040735 256 VFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN-----------YN---SWRALSCPFGA--G 319 (779)
Q Consensus 256 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-----------~~---~~~~l~~~l~~--~ 319 (779)
..+. .... ..........+...-...+.+|+||+++.-. .. .+..+...+.. .
T Consensus 190 -~~l~----~~~~------g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SELV----RKYI------GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHHH----HHhh------hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111 1100 0011111222222223567899999985310 01 12222222211 1
Q ss_pred CCCcEEEEEcCchhhHh-hh----cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh
Q 040735 320 AFGSKIVVTHRNQGVAE-TM----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 389 (779)
Q Consensus 320 ~~gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P 389 (779)
..+..||.||....... .+ .-...+.++..+.++..++|...+...... ..-. ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 23567888887543221 11 123568899999999999998876443211 1112 355667777664
No 102
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.06 E-value=7.3e-07 Score=77.42 Aligned_cols=94 Identities=22% Similarity=0.246 Sum_probs=75.3
Q ss_pred hhhcCCCCccEEEecCCCCCccCccccC-CCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCcccc
Q 040735 592 QRLLNLPRLRVFSLHGYHISKLPNEIGN-LKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKL 670 (779)
Q Consensus 592 ~~~~~l~~L~~L~l~~n~l~~lp~~~~~-l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L 670 (779)
..+.....|+..+|++|.+.++|+.|.. .+.++.|+|++|.|+.+|..+..++.|+.|+++.| .+...|.-+..|.+|
T Consensus 47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKL 125 (177)
T ss_pred HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhH
Confidence 3344666788888999998888877754 45888899999999999988888899999999988 777788888888888
Q ss_pred ceeecCCCcccccCCcc
Q 040735 671 HHLRNPNVHSLEEMPKG 687 (779)
Q Consensus 671 ~~L~l~~~~~~~~~p~~ 687 (779)
-+|+..+|. ...+|-.
T Consensus 126 ~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 126 DMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHhcCCCCc-cccCcHH
Confidence 888888887 5566644
No 103
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00013 Score=79.14 Aligned_cols=181 Identities=14% Similarity=0.160 Sum_probs=101.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc------ccccCceE-EEEeCCCCCHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRV------QRHFQIKS-WTCVFEDFDVF 257 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~~-wv~~~~~~~~~ 257 (779)
.+++|.+..++.+...+.... -...+.++|++|+||||+|+.+.+.... ...|...+ -+........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 358999999999999986432 2468889999999999999988663211 01121111 1110000001
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEc-CchhhHh
Q 040735 258 RVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTH-RNQGVAE 336 (779)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~v~~ 336 (779)
+..+.+++.+... -..+++-++++|++.......+..+...+......+.+|++| ....+..
T Consensus 91 ~~i~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 91 DDIRNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred HHHHHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 1111112111100 112455689999985544445666655443333345555555 3333322
Q ss_pred h-hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHH
Q 040735 337 T-MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 392 (779)
Q Consensus 337 ~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 392 (779)
. ......+++.+++.++....+...+..... .. ..+....|++.++|.+-.+
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i---~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KF---EDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHhCCCCHHHH
Confidence 2 123357889999999998888876643221 11 1366778888899876543
No 104
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=9.7e-05 Score=83.63 Aligned_cols=199 Identities=16% Similarity=0.140 Sum_probs=111.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCc--eEEEEeCCCCCHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQI--KSWTCVFEDFDVFRVSKL 262 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~ 262 (779)
.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.......... ..+ ........-+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 468999999999999986443 2356889999999999999998763211110000 000 00000111111
Q ss_pred HHHHhhc-------CCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEE-EcCchh
Q 040735 263 ILNSIAS-------DQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVV-THRNQG 333 (779)
Q Consensus 263 il~~l~~-------~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~ 333 (779)
|...... .......++.++.+.++.. ..+++-++|+|++...+....+.+...+-.....+.+|+ |+....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111110 0000122222233222211 134556899999966555566667666655444566655 444444
Q ss_pred hHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 334 VAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 334 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
+...+ .....+.+.+++.++....+.+.+-.... .. ..+....|++.++|.+.-+....
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i---~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EV---EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 43332 23467899999999999888876532221 11 22567888999999986655443
No 105
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.04 E-value=5.7e-07 Score=98.97 Aligned_cols=106 Identities=22% Similarity=0.272 Sum_probs=85.5
Q ss_pred hhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccc
Q 040735 592 QRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLH 671 (779)
Q Consensus 592 ~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 671 (779)
..+..+++|..|++.+|.|..+...+..+.+|++|+|++|.|+.+. .+..|..|+.|++.+| .+..++ ++..+++|+
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDIS-GLESLKSLK 165 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhcc-CCccchhhh
Confidence 3356889999999999999988766888999999999999999884 4778888999999999 777664 366689999
Q ss_pred eeecCCCcccccCCcc-cCCCCCCcccCcee
Q 040735 672 HLRNPNVHSLEEMPKG-FGKLTCLLTLSRFV 701 (779)
Q Consensus 672 ~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~ 701 (779)
.+++++|. +..++.. +..+.+|+.+.+..
T Consensus 166 ~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 166 LLDLSYNR-IVDIENDELSELISLEELDLGG 195 (414)
T ss_pred cccCCcch-hhhhhhhhhhhccchHHHhccC
Confidence 99999998 5555542 46677777776433
No 106
>PRK05642 DNA replication initiation factor; Validated
Probab=98.04 E-value=9.4e-05 Score=74.28 Aligned_cols=156 Identities=21% Similarity=0.206 Sum_probs=90.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSG 291 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 291 (779)
...+.|+|..|+|||.|++.+++.. ...-..++|++..+ +... .. .+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~---------------~~----~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR---------------GP----ELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh---------------hH----HHHHhhhh
Confidence 3678999999999999999998632 22223445665421 1110 01 12222222
Q ss_pred CeEEEEEeCCcCC-Chhhhhh-hcccCCC-CCCCcEEEEEcCchh---------hHhhhcccccccCCCCChHHHHHHHH
Q 040735 292 KKFLVVLDDVWNE-NYNSWRA-LSCPFGA-GAFGSKIVVTHRNQG---------VAETMRAVSTKTLKELSDDDCLRVLI 359 (779)
Q Consensus 292 k~~LlVlDdvw~~-~~~~~~~-l~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 359 (779)
-. +||+||+... ....|.. +...+.. ...|..||+|++... +.+.+....++++++++.++-..++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 6889999532 1234433 3333322 123667899887532 22233334678899999999999998
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhh
Q 040735 360 QHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 399 (779)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l 399 (779)
.++.... ...+ .++...|++.+.|..-.+..+-..|
T Consensus 177 ~ka~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRG-LHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6664321 1222 3777888888888876655544433
No 107
>PF14516 AAA_35: AAA-like domain
Probab=98.03 E-value=0.00089 Score=70.99 Aligned_cols=202 Identities=13% Similarity=0.105 Sum_probs=116.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCC-----CCHHH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFED-----FDVFR 258 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~ 258 (779)
.+..|.|...-+++.+.+...+ ..+.|.|+-.+|||+|...+.+..+.. .| ..+++++..- .+...
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHH
Confidence 3446788866777777775433 589999999999999999988743322 33 3456666542 24555
Q ss_pred HHHHHHHHhhcCCCC----------CcccHHHHHHHHHHHh---CCCeEEEEEeCCcCCC--hhhhhhhcccCC---CC-
Q 040735 259 VSKLILNSIASDQCT----------DKDDLNLLQEKLKKQL---SGKKFLVVLDDVWNEN--YNSWRALSCPFG---AG- 319 (779)
Q Consensus 259 ~~~~il~~l~~~~~~----------~~~~~~~~~~~l~~~l---~~k~~LlVlDdvw~~~--~~~~~~l~~~l~---~~- 319 (779)
.++.++..+...-.. ...........+.+++ .+++.+|+||++..-. ....+++...+. ..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 555555555433211 1112233344454443 2689999999994311 011111111111 11
Q ss_pred C----CC-cE-EEEEcCchhhH-hh----hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCC
Q 040735 320 A----FG-SK-IVVTHRNQGVA-ET----MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL 388 (779)
Q Consensus 320 ~----~g-s~-IivTtR~~~v~-~~----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~ 388 (779)
. .. -+ |++.+...... +. ......+.|++++.+|...|....-.. ..+ ...++|...++|+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~---~~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQ---EQLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCH---HHHHHHHHHHCCC
Confidence 0 01 11 22222111111 11 111257889999999999998776321 111 2388899999999
Q ss_pred hHHHHHHHhhhcCC
Q 040735 389 PLAAKTLGGLLRGK 402 (779)
Q Consensus 389 PLai~~~~~~l~~~ 402 (779)
|.-+..++..+...
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999764
No 108
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.0001 Score=86.38 Aligned_cols=193 Identities=15% Similarity=0.071 Sum_probs=108.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+.......... ..+.....-+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 368999999999999986432 2346789999999999999988653211110000 0000000000000
Q ss_pred HH---------hhcCCCCCcccHHHHHHHHH-HHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEE-EcCchh
Q 040735 265 NS---------IASDQCTDKDDLNLLQEKLK-KQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVV-THRNQG 333 (779)
Q Consensus 265 ~~---------l~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~ 333 (779)
.. +........+++.++.+.+. .-..++.-++|||++...+...++.|+..+..-...+.+|+ |+....
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 00000001122222222211 11245666899999977777777777777766544555554 444444
Q ss_pred hHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 040735 334 VAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 393 (779)
Q Consensus 334 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 393 (779)
+...+ .....|++.+++.++....+.+.+-.... . ...+....|++.++|.+..+.
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~---id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-P---VEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 54433 23468899999999988888765422211 1 122456778999999885443
No 109
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=3.9e-06 Score=59.18 Aligned_cols=40 Identities=33% Similarity=0.470 Sum_probs=28.1
Q ss_pred CccceEecccccccccccccccccccceeeccCCcchhhch
Q 040735 621 KHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLC 661 (779)
Q Consensus 621 ~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp 661 (779)
++|++|++++|+|+.+|+.+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 3677888888888888777778888888888877 555544
No 110
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=0.00018 Score=75.63 Aligned_cols=178 Identities=17% Similarity=0.146 Sum_probs=110.8
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHH
Q 040735 183 NEAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKL 262 (779)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 262 (779)
.+..++||+.+++.+..|+...-. ....+.+-|.|.+|.|||.+...++.+..-...=..++++.+..-.....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 456799999999999999976542 234578889999999999999999985432222234567777666677788888
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHHhCC--CeEEEEEeCCcCCChhhhhhhcccCCC-CCCCcEEEEEcCchh--hHh-
Q 040735 263 ILNSIASDQCTDKDDLNLLQEKLKKQLSG--KKFLVVLDDVWNENYNSWRALSCPFGA-GAFGSKIVVTHRNQG--VAE- 336 (779)
Q Consensus 263 il~~l~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~IivTtR~~~--v~~- 336 (779)
|...+.......... .+..+.+.++..+ +.+|+|+|.+..-....-..+...|.+ .-+++++|+.--... ...
T Consensus 226 I~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 888773222211222 4556666666644 368999999832111111122222222 234666655432221 111
Q ss_pred ---hh-----cccccccCCCCChHHHHHHHHHhhc
Q 040735 337 ---TM-----RAVSTKTLKELSDDDCLRVLIQHSL 363 (779)
Q Consensus 337 ---~~-----~~~~~~~l~~L~~~~~~~lf~~~a~ 363 (779)
.+ .....+...|-+.++..++|..+.-
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 11 1235677899999999999998764
No 111
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=7.6e-05 Score=85.31 Aligned_cols=198 Identities=15% Similarity=0.122 Sum_probs=110.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+......... ...........+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 468999999999988886432 235678999999999999999876321100000 001111122222222
Q ss_pred HHhhcCC---C-CCcccHHHH---HHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCc-hhhH
Q 040735 265 NSIASDQ---C-TDKDDLNLL---QEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRN-QGVA 335 (779)
Q Consensus 265 ~~l~~~~---~-~~~~~~~~~---~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~ 335 (779)
....... . ......+++ .+.+... ..+++-++|+|++..-.....+.+...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 2111100 0 011122222 2222111 1245679999999655545566666555444445566655543 3333
Q ss_pred hhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 040735 336 ETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 397 (779)
Q Consensus 336 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 397 (779)
..+ .....+.+.+++.++....+...+..... .. ..+.+..|++.++|.+..+.....
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i---~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NL---EPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 322 22357888999999988888776543221 11 235678899999999865554433
No 112
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.00 E-value=8.8e-05 Score=73.53 Aligned_cols=164 Identities=15% Similarity=0.187 Sum_probs=93.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccC--ceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQ--IKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQ 288 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 288 (779)
....+.|+|..|+|||.|.+++++. .....+ .++++ +..+....+...+... ... .+++.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~------~~~~f~~~~~~~~~~~------~~~----~~~~~ 94 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYL------SAEEFIREFADALRDG------EIE----EFKDR 94 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEE------EHHHHHHHHHHHHHTT------SHH----HHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceee------cHHHHHHHHHHHHHcc------cch----hhhhh
Confidence 3456899999999999999999984 333222 23444 3445555565555432 122 23333
Q ss_pred hCCCeEEEEEeCCcCCCh-hhhhh-hcccCCC-CCCCcEEEEEcCch---------hhHhhhcccccccCCCCChHHHHH
Q 040735 289 LSGKKFLVVLDDVWNENY-NSWRA-LSCPFGA-GAFGSKIVVTHRNQ---------GVAETMRAVSTKTLKELSDDDCLR 356 (779)
Q Consensus 289 l~~k~~LlVlDdvw~~~~-~~~~~-l~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 356 (779)
+.+ -=+|++||++.-.. ..|.. +...+.. ...|.+||+|++.. .+.+.+...-.+++.+++.++...
T Consensus 95 ~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 95 LRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp HCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHH
T ss_pred hhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHH
Confidence 442 34889999954221 22322 2222211 12366899999653 233344455689999999999999
Q ss_pred HHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 040735 357 VLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 397 (779)
Q Consensus 357 lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 397 (779)
++.+.+....- . --++++.-|++.+.+..-.+..+-.
T Consensus 174 il~~~a~~~~~-~---l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 174 ILQKKAKERGI-E---LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHHhCC-C---CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 99988753222 2 2236677788888776655554443
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00016 Score=81.13 Aligned_cols=199 Identities=17% Similarity=0.162 Sum_probs=111.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+..++.|.+.+.... -...+.++|+.|+||||+|+.+.+..-...... ...+.....-+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHh
Confidence 368899988888888885432 235778899999999999998876321110000 00011111111111
Q ss_pred HHhhc-------CCCCCcccHHHHHHHHHH-HhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCc-hhhH
Q 040735 265 NSIAS-------DQCTDKDDLNLLQEKLKK-QLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRN-QGVA 335 (779)
Q Consensus 265 ~~l~~-------~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~ 335 (779)
..... .......+...+.+.+.. -..+++-++|+|++........+.+...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 11000 000011112222222211 12356679999999766556667777666543334555555544 4444
Q ss_pred hhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh-HHHHHHHhhh
Q 040735 336 ETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP-LAAKTLGGLL 399 (779)
Q Consensus 336 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~~~~l 399 (779)
..+ .....+++.+++.++....+...+..... . -..+.+..|++.++|.+ .|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-D---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 322 23357899999999999888775543221 1 12356778889999965 6776665544
No 114
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.99 E-value=1.6e-06 Score=95.49 Aligned_cols=106 Identities=24% Similarity=0.296 Sum_probs=84.6
Q ss_pred cccccccceEecccCcccccccccchHhhhh-hcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccc
Q 040735 563 SVSDVERLRTFLPVNLSDYRRNYLAWSVLQR-LLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESIN 641 (779)
Q Consensus 563 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~ 641 (779)
.+..+.+|..|.+.++. + .-... +..+++|++|++++|.|+.+ ..+..+..|+.|++++|.|+.++. +.
T Consensus 90 ~l~~~~~l~~l~l~~n~------i--~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~-~~ 159 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNK------I--EKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISG-LE 159 (414)
T ss_pred ccccccceeeeeccccc------h--hhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccC-Cc
Confidence 36677788888877765 1 12233 55789999999999999988 457778889999999999998854 56
Q ss_pred cccccceeeccCCcchhhchhh-hcCccccceeecCCCc
Q 040735 642 SLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVH 679 (779)
Q Consensus 642 ~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 679 (779)
.+.+|+.+++++| .+..++.. ...+.+|+.+.+.+|.
T Consensus 160 ~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 160 SLKSLKLLDLSYN-RIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cchhhhcccCCcc-hhhhhhhhhhhhccchHHHhccCCc
Confidence 6999999999999 77777654 5788999999999988
No 115
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00021 Score=80.42 Aligned_cols=197 Identities=14% Similarity=0.100 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.....-..... + .+......-+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 468999999999999986432 234578999999999999998876321100000 0 0000000011110
Q ss_pred HH---------hhcCCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEE-EEcCchh
Q 040735 265 NS---------IASDQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIV-VTHRNQG 333 (779)
Q Consensus 265 ~~---------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~ 333 (779)
.. +........+++.++.+.+... ..+++-++|+|++..-+....+.+...+......+.+| +||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 0000000122222333222211 13556699999997766677777776666544455555 4555554
Q ss_pred hHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChH-HHHHHHh
Q 040735 334 VAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLGG 397 (779)
Q Consensus 334 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~~ 397 (779)
+...+ .....+.+.+++.++..+.+.+.+..... .. ..+....|++.++|.+- ++..+-.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i---~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VV---DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44332 23468899999999988888765532221 11 12456778899999874 4444433
No 116
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.97 E-value=0.00017 Score=79.41 Aligned_cols=169 Identities=11% Similarity=0.081 Sum_probs=99.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSG 291 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 291 (779)
...+.|+|..|+|||+|++++.+.......-..++++ +..++...+...+.... ...+.+++.+..
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~--------~~~~~~~~~~~~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH--------KEIEQFKNEICQ 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh--------hHHHHHHHHhcc
Confidence 3568999999999999999998732111111122333 33456666666654311 112233344443
Q ss_pred CeEEEEEeCCcCCCh-hhh-hhhcccCCCC-CCCcEEEEEcCch---------hhHhhhcccccccCCCCChHHHHHHHH
Q 040735 292 KKFLVVLDDVWNENY-NSW-RALSCPFGAG-AFGSKIVVTHRNQ---------GVAETMRAVSTKTLKELSDDDCLRVLI 359 (779)
Q Consensus 292 k~~LlVlDdvw~~~~-~~~-~~l~~~l~~~-~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 359 (779)
.-+||+||+..... ..+ +.+...+... ..|..||+|+... .+...+...-++.+.+++.++-..++.
T Consensus 207 -~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 207 -NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred -CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 44888999954321 122 2333322221 2345788887643 222333445678899999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 040735 360 QHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 397 (779)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 397 (779)
+++-.... . ..--.++...|++.+.|.|-.+.-+..
T Consensus 286 ~~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 286 KEIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 88743211 0 122347788999999999987766553
No 117
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.95 E-value=2.2e-07 Score=101.21 Aligned_cols=62 Identities=26% Similarity=0.360 Sum_probs=44.1
Q ss_pred ccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCc
Q 040735 622 HLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPK 686 (779)
Q Consensus 622 ~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 686 (779)
.|.+.+.++|.+..+-.++.-++.|+.|||++| .+.... .+..|++|+|||++.|. +..+|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~ 226 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQ 226 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccch-hccccc
Confidence 366667777777777777777777888888877 555554 56777778888888777 666664
No 118
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.95 E-value=1.7e-05 Score=83.49 Aligned_cols=90 Identities=17% Similarity=0.191 Sum_probs=61.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCC--CCHHHHHHHHHHHhhcCCCCCcccH-----HHHHHHH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFED--FDVFRVSKLILNSIASDQCTDKDDL-----NLLQEKL 285 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~-----~~~~~~l 285 (779)
..++|+|++|+|||||++.+++..... +|+..+||.+.+. .++.++++.++..+-.......... ....+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 578999999999999999999864433 7998999999866 7888998888654433332111111 1111122
Q ss_pred HHH-hCCCeEEEEEeCCcC
Q 040735 286 KKQ-LSGKKFLVVLDDVWN 303 (779)
Q Consensus 286 ~~~-l~~k~~LlVlDdvw~ 303 (779)
... -.+++++|++|++..
T Consensus 248 e~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHcCCCeEEEEEChhH
Confidence 222 268999999999943
No 119
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00025 Score=80.91 Aligned_cols=193 Identities=16% Similarity=0.177 Sum_probs=107.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc---c-CceEEE-EeCCCCCHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRH---F-QIKSWT-CVFEDFDVFRV 259 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~wv-~~~~~~~~~~~ 259 (779)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+....-.... + .|..-. +....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 468999999999999986543 2356778999999999999988652110000 0 000000 000000000
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcE-EEEEcCchhhHhh
Q 040735 260 SKLILNSIASDQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSK-IVVTHRNQGVAET 337 (779)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~-IivTtR~~~v~~~ 337 (779)
.+.........+++++.+.+... ..+++-++|+|++.......+..+...+-.....+. |++|++...+...
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00000000111223333332211 235667999999976655667777666554433444 4555555555433
Q ss_pred -hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 040735 338 -MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 394 (779)
Q Consensus 338 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 394 (779)
......+.+.+++.++....+...+-.... . ...+.+..|++.++|.+--+..
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~---id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENI-S---YEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 223468999999999998888765432221 1 1124577899999997754433
No 120
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.94 E-value=6.9e-05 Score=88.21 Aligned_cols=156 Identities=15% Similarity=0.217 Sum_probs=84.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc---ccccc-CceEEEEeCCCCCHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDR---VQRHF-QIKSWTCVFEDFDVFRVS 260 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~~~~~~~~~~~ 260 (779)
.+++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ ...+|. + +...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH-
Confidence 368999999999999886543 23467999999999999999887321 11111 233332 1 11111
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHh-CCCeEEEEEeCCcCCC---------hhhhhhhcccCCCCCCCcEEEEEcC
Q 040735 261 KLILNSIASDQCTDKDDLNLLQEKLKKQL-SGKKFLVVLDDVWNEN---------YNSWRALSCPFGAGAFGSKIVVTHR 330 (779)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~---------~~~~~~l~~~l~~~~~gs~IivTtR 330 (779)
+. ... ...+.+.....+.+.+ ..++.+|++|++..-. .+.-+.+...+.. + .-++|-+|.
T Consensus 250 ---~a---~~~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt 319 (731)
T TIGR02639 250 ---LA---GTK--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTT 319 (731)
T ss_pred ---hh---hcc--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecC
Confidence 10 000 1112222222222222 3468999999995210 1111223322222 1 234555554
Q ss_pred chhhHhh-------hcccccccCCCCChHHHHHHHHHhh
Q 040735 331 NQGVAET-------MRAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 331 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
..+.... ......+.+++++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4222111 1123578999999999999998644
No 121
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00042 Score=76.90 Aligned_cols=184 Identities=15% Similarity=0.123 Sum_probs=105.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---cc----------------ccCce
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRV---QR----------------HFQIK 245 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~----------------~F~~~ 245 (779)
.+++|.+..+..+..++.... -...+.++|+.|+||||+|+.+.....- .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 368899999999999986432 2345678999999999999987652110 00 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcE
Q 040735 246 SWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSK 324 (779)
Q Consensus 246 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 324 (779)
+++..+... ...+...+.+.+... ..+++-++|+|++..-.....+.+...+........
T Consensus 91 ~eidaas~~-------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 91 IEIDAASNR-------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEeCccCC-------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 111111100 111122222222111 135677999999965555556666655554444445
Q ss_pred EEE-EcCchhhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 325 IVV-THRNQGVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 325 Iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
+|+ ||+...+...+ .....+.+.+++.++....+...+-.... . ...+.+..|++.++|.+-.+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~---id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-E---YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 554 44443333222 23357889999999988888776532221 1 122556778889999876554444
No 122
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.93 E-value=0.00024 Score=71.86 Aligned_cols=200 Identities=17% Similarity=0.120 Sum_probs=119.1
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc----ccCceEEEEeCCCCCHHHHHHHHHHH
Q 040735 191 EKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQR----HFQIKSWTCVFEDFDVFRVSKLILNS 266 (779)
Q Consensus 191 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~ 266 (779)
.+.++++.+++..+. ..+..-+.|+|.+|.|||++++.+....-... .--.++.|......+...+...|+.+
T Consensus 43 ~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 43 KEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 345666777776543 35667899999999999999999986421111 11145677778888999999999999
Q ss_pred hhcCCCCCcccHHHHHHHHHHHhCC-CeEEEEEeCCcCCC------hhhhhhhcccCCCCCCCcEEEEEcCchhhHhh--
Q 040735 267 IASDQCTDKDDLNLLQEKLKKQLSG-KKFLVVLDDVWNEN------YNSWRALSCPFGAGAFGSKIVVTHRNQGVAET-- 337 (779)
Q Consensus 267 l~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw~~~------~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~-- 337 (779)
++.+.. .......+.......++. +--+||+|.+.+-- ....-.....+.+.-.=+-|.|-|+.---+-.
T Consensus 120 lgaP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D 198 (302)
T PF05621_consen 120 LGAPYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTD 198 (302)
T ss_pred hCcccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccC
Confidence 998875 444555555555555543 45699999995511 11111122223232233456666654322111
Q ss_pred ---hcccccccCCCCChH-HHHHHHHHh--hcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 338 ---MRAVSTKTLKELSDD-DCLRVLIQH--SLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 338 ---~~~~~~~~l~~L~~~-~~~~lf~~~--a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
.....++.++....+ +...|+... .++-.. ..+-...++++.|...++|+.=-+..+
T Consensus 199 ~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 199 PQLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 112346666666543 444454332 122222 222345688999999999997544433
No 123
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.92 E-value=0.00011 Score=87.11 Aligned_cols=155 Identities=15% Similarity=0.186 Sum_probs=84.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---ccc-cCceEE-EEeCCCCCHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRV---QRH-FQIKSW-TCVFEDFDVFRV 259 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~-F~~~~w-v~~~~~~~~~~~ 259 (779)
.+++||+.++++++..|.... ..-+.++|++|+||||+|+.+.+...- ... ....+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 468999999999999986543 235569999999999999998873211 111 112232 22111
Q ss_pred HHHHHHHhhcCCCCCcccH-HHHHHHHHHHh-CCCeEEEEEeCCcCCC-------hhhhhhhcccCCCCCCCcEEEEEcC
Q 040735 260 SKLILNSIASDQCTDKDDL-NLLQEKLKKQL-SGKKFLVVLDDVWNEN-------YNSWRALSCPFGAGAFGSKIVVTHR 330 (779)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~-~~~~~~l~~~l-~~k~~LlVlDdvw~~~-------~~~~~~l~~~l~~~~~gs~IivTtR 330 (779)
+..... ...+. +.+...+.+.- .+++.+|++|++..-. ..+...+..+....+ .-++|-||.
T Consensus 254 -------l~ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT 324 (852)
T TIGR03345 254 -------LQAGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATT 324 (852)
T ss_pred -------hhcccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecC
Confidence 000000 01111 12222222221 2468999999985421 111111222222221 345666666
Q ss_pred chhhHhhh-------cccccccCCCCChHHHHHHHHHh
Q 040735 331 NQGVAETM-------RAVSTKTLKELSDDDCLRVLIQH 361 (779)
Q Consensus 331 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 361 (779)
..+....+ .....+.+++++.++...++...
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 54332111 23368999999999999997544
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.92 E-value=0.00031 Score=74.45 Aligned_cols=147 Identities=15% Similarity=0.158 Sum_probs=81.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+...+.+..++..+. -..++.++|++|+|||++|+.+++.. ... ...++.+. .. ....+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~-~~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CR-IDFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-cc-HHHHHHHH
Confidence 468999999999999986432 34677789999999999999998732 211 22333333 11 11111111
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCC-ChhhhhhhcccCCCCCCCcEEEEEcCchh-hHhhh-ccc
Q 040735 265 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNE-NYNSWRALSCPFGAGAFGSKIVVTHRNQG-VAETM-RAV 341 (779)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~~-~~~ 341 (779)
....... .+.+.+-++|+||+... .......+...+.....++++|+||.... +...+ ...
T Consensus 89 ~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 01234568999999543 22222333333433345678888886542 11111 122
Q ss_pred ccccCCCCChHHHHHHHH
Q 040735 342 STKTLKELSDDDCLRVLI 359 (779)
Q Consensus 342 ~~~~l~~L~~~~~~~lf~ 359 (779)
..+.+...+.++...++.
T Consensus 153 ~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred eEEEeCCCCHHHHHHHHH
Confidence 355666666776665544
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00029 Score=79.92 Aligned_cols=198 Identities=16% Similarity=0.134 Sum_probs=106.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEE-eCCCCCHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTC-VFEDFDVFRVSKLI 263 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i 263 (779)
.+++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+.+..-....+....|.. +..+......-+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999999999999885432 234578999999999999988865321111110001110 00111111111111
Q ss_pred HHHhhcC----CCCCcccHHHHHHHHHHH----hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEE-EEcCchhh
Q 040735 264 LNSIASD----QCTDKDDLNLLQEKLKKQ----LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIV-VTHRNQGV 334 (779)
Q Consensus 264 l~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~v 334 (779)
...-... .......++++.+.+... ..+++-++|+|++........+.+...+......+.+| +|++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1100000 000111123333222221 23456688999996655556666766665544445554 45444444
Q ss_pred Hhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHH
Q 040735 335 AETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLA 391 (779)
Q Consensus 335 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 391 (779)
...+ .....+++.+++.++....+.+.+-.... .. ..+.+..|++.++|..--
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I---~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QI---DADALQLIARKAQGSMRD 224 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHhCCCHHH
Confidence 4332 33468999999999988877765432211 11 235678899999996653
No 126
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.90 E-value=0.00017 Score=73.97 Aligned_cols=161 Identities=11% Similarity=0.102 Sum_probs=79.3
Q ss_pred ccccchhhHHHHHHHHhc---------CCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCH
Q 040735 186 EVYGREKDKEAIVELLLR---------DDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDV 256 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 256 (779)
.++|.+..++.|.+.... ..-...+....+.++|++|+||||+|+.+++...-........++.+...
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478888777666543211 11112334567889999999999999998763210111111223333221
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC--------hhhhhhhcccCCCCCCCcEEEEE
Q 040735 257 FRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN--------YNSWRALSCPFGAGAFGSKIVVT 328 (779)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~IivT 328 (779)
++ ....- ........+.+... . ..+|++|++..-. ....+.+...+........+|++
T Consensus 84 -~l----~~~~~------g~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 84 -DL----VGEYI------GHTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred -Hh----hhhhc------cchHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 11 11110 01112222222222 2 3489999995311 12233343333333333455555
Q ss_pred cCchhhHh------hh-cc-cccccCCCCChHHHHHHHHHhhc
Q 040735 329 HRNQGVAE------TM-RA-VSTKTLKELSDDDCLRVLIQHSL 363 (779)
Q Consensus 329 tR~~~v~~------~~-~~-~~~~~l~~L~~~~~~~lf~~~a~ 363 (779)
+....... .+ .. ...+.+++++.++..+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 54332211 01 11 24578899999998888877653
No 127
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.90 E-value=0.00035 Score=68.46 Aligned_cols=127 Identities=22% Similarity=0.240 Sum_probs=72.3
Q ss_pred CCCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHH
Q 040735 181 LVNEAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVS 260 (779)
Q Consensus 181 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 260 (779)
.+.-..++|.+.+++.|++-...--. .....-+.+||..|+|||++++++.+...-.. .--|.+...
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~------- 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE------- 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH-------
Confidence 34456799999999988875533211 12345677899999999999999887322111 111222111
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcC-CChhhhhhhcccCCCC----CCCcEEEEEcCchhhH
Q 040735 261 KLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWN-ENYNSWRALSCPFGAG----AFGSKIVVTHRNQGVA 335 (779)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~----~~gs~IivTtR~~~v~ 335 (779)
+..++..+.+.++. ...||+|++||+.- .....+..++..+..+ .....|..||..+++.
T Consensus 90 -------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 -------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 22333444444442 45799999999842 2234455555544332 2234455555555544
No 128
>CHL00181 cbbX CbbX; Provisional
Probab=97.89 E-value=0.00064 Score=70.29 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=70.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
..+.++|++|+||||+|+.++........-...-|+.++.. + +...+.... .......+.+. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~----l~~~~~g~~------~~~~~~~l~~a-~-- 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----D----LVGQYIGHT------APKTKEVLKKA-M-- 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----H----HHHHHhccc------hHHHHHHHHHc-c--
Confidence 45788999999999999999763211111112224544411 2 222221111 11122223222 2
Q ss_pred eEEEEEeCCcCC---------ChhhhhhhcccCCCCCCCcEEEEEcCchhhHhhh--------cccccccCCCCChHHHH
Q 040735 293 KFLVVLDDVWNE---------NYNSWRALSCPFGAGAFGSKIVVTHRNQGVAETM--------RAVSTKTLKELSDDDCL 355 (779)
Q Consensus 293 ~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~ 355 (779)
.-+|++|++..- ..+....+...+.....+.+||.++......... .-...+.+++++.++..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 349999999531 1122223333343344456777777544332111 11246889999999998
Q ss_pred HHHHHhhc
Q 040735 356 RVLIQHSL 363 (779)
Q Consensus 356 ~lf~~~a~ 363 (779)
+++...+-
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 88877653
No 129
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00055 Score=76.03 Aligned_cols=181 Identities=14% Similarity=0.096 Sum_probs=108.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc--ccc----------------cC-ce
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRV--QRH----------------FQ-IK 245 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~----------------F~-~~ 245 (779)
.+++|-+...+.+...+.... -..++.++|+.|+||||+|+.+.+..-- ... +. ..
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 468999999999999885432 2356689999999999999987652100 000 00 11
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH----hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCC
Q 040735 246 SWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQ----LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAF 321 (779)
Q Consensus 246 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 321 (779)
+.+.... ....+.+.+.+... ..+++-++|+|++...+....+.+...+-....
T Consensus 89 ~eldaas----------------------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 89 IEMDAAS----------------------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEecccc----------------------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 1111110 01122333222211 124566999999977666666777666655444
Q ss_pred CcEEEEEcCch-hhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 322 GSKIVVTHRNQ-GVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 322 gs~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
.+.+|++|.+. .+...+ .....+++.+++.++....+...+-..+. .. ..+.+..|++.++|.+--+....
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i---~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-SY---EPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 56666666543 222221 22468899999999998888765533221 11 23567889999999985554443
No 130
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.86 E-value=0.00013 Score=72.61 Aligned_cols=186 Identities=16% Similarity=0.133 Sum_probs=111.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEE-EEeCCCCCHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSW-TCVFEDFDVFRVSKLI 263 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~~~~~~~~~~~~~i 263 (779)
.+++|.+..+..+.+.+... ...+...+|++|.|||+-|..+....--.+.|++++- .+++..-... +.+.-
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh
Confidence 46899999999999998652 3578899999999999999888764333345665543 2333222111 11110
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHh--CCCe-EEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCc-hhhHhhh-
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLKKQL--SGKK-FLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRN-QGVAETM- 338 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~- 338 (779)
.. +...+........ ..++ -++|||++.....+.|..++..+......++.|..+.. ..+...+
T Consensus 109 ik-----------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 109 IK-----------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred hc-----------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 00 0011000000000 1134 48899999888889999998877765555665544443 3222211
Q ss_pred cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHH
Q 040735 339 RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 392 (779)
Q Consensus 339 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 392 (779)
....-+..++|.+++...-+...+-..+... ..+..+.|++.++|.---.
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~----d~~al~~I~~~S~GdLR~A 227 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDI----DDDALKLIAKISDGDLRRA 227 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCcHHHH
Confidence 1224678899999999888887764433222 2355777888888865433
No 131
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.86 E-value=0.00013 Score=79.14 Aligned_cols=179 Identities=14% Similarity=0.129 Sum_probs=95.5
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDS-------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDV 256 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 256 (779)
..++.|++..++++.+.+...-. -+-..++-|.++|++|+|||++|+.+++. .... |+.+..
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 35689999999999887642110 01234567899999999999999999873 2222 232221
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCC-----------ChhhhhhhcccC---CC--CC
Q 040735 257 FRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNE-----------NYNSWRALSCPF---GA--GA 320 (779)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-----------~~~~~~~l~~~l---~~--~~ 320 (779)
.++ ..... ......+...+...-...+.+|+|||+..- +......+...+ .. ..
T Consensus 199 ~~l----~~~~~------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SEL----VQKFI------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HHH----hHhhc------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 111 11110 011111222222222356789999999431 001111121111 11 12
Q ss_pred CCcEEEEEcCchhhHh-hh----cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCC
Q 040735 321 FGSKIVVTHRNQGVAE-TM----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL 388 (779)
Q Consensus 321 ~gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~ 388 (779)
.+..||.||....... .+ .-...+.+++.+.++-.++|..+...... ...-. ...+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCC
Confidence 3566777777543221 11 11356889999999999999876543221 11112 34566666664
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00046 Score=78.82 Aligned_cols=178 Identities=16% Similarity=0.136 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---------------------ccccC
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRV---------------------QRHFQ 243 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~ 243 (779)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+...... ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 368999999999999986432 2356789999999999999887652110 01121
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH----hCCCeEEEEEeCCcCCChhhhhhhcccCCCC
Q 040735 244 IKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQ----LSGKKFLVVLDDVWNENYNSWRALSCPFGAG 319 (779)
Q Consensus 244 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~ 319 (779)
. ..+...... ..+++.+.+.+. ..+++-++|+|++..-+...++.+...+...
T Consensus 92 ~-~~ld~~~~~----------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 92 I-HELDAASNN----------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred e-EEecccccC----------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 1 111111111 122222222111 1245568899999776666677777766654
Q ss_pred CCCcEEEE-EcCchhhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 040735 320 AFGSKIVV-THRNQGVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 394 (779)
Q Consensus 320 ~~gs~Iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 394 (779)
...+.+|+ |++...+...+ .....+++.+++.++....+.+.+-.... .. ..+.+..|++.++|..--+..
T Consensus 149 p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i---~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TA---EPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 44556555 54544444332 23468999999999999888775533221 11 125678899999997754433
No 133
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00049 Score=75.86 Aligned_cols=181 Identities=14% Similarity=0.149 Sum_probs=102.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc----ccCce--------------E
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQR----HFQIK--------------S 246 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~--------------~ 246 (779)
.+++|.+..++.+..++.... -...+.++|++|+||||+|+.+.+..--.. .-.|. -
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999986432 235678899999999999998865211100 00000 0
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEE
Q 040735 247 WTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKK-QLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKI 325 (779)
Q Consensus 247 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I 325 (779)
|+.+.... .....+..++.+.+.- -..+++-++|+|++........+.+...+......+.+
T Consensus 92 ~~~i~g~~-----------------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 92 VLEIDGAS-----------------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred eEEeeccc-----------------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 11111000 0011112222221111 11356678999998554444555565555544445566
Q ss_pred EEEcC-chhhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHH
Q 040735 326 VVTHR-NQGVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLA 391 (779)
Q Consensus 326 ivTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 391 (779)
|++|. ...+...+ .....+++.+++.++....+...+-.... . -..+.+..|++.++|.+--
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~---i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-E---TSREALLPIARAAQGSLRD 218 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHH
Confidence 66553 33333222 23457899999999998888765532211 1 1235678899999997643
No 134
>PRK06620 hypothetical protein; Validated
Probab=97.83 E-value=0.00014 Score=71.80 Aligned_cols=137 Identities=13% Similarity=0.108 Sum_probs=78.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
+.+.|+|++|+|||+|++.+++... . .++. ..+. . + +.++ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~---------------------~-~-------~~~~-~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF---------------------N-E-------EILE-K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh---------------------c-h-------hHHh-c
Confidence 6789999999999999998876431 1 1111 0000 0 0 0111 2
Q ss_pred eEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchh-------hHhhhcccccccCCCCChHHHHHHHHHhhcCC
Q 040735 293 KFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQG-------VAETMRAVSTKTLKELSDDDCLRVLIQHSLGA 365 (779)
Q Consensus 293 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 365 (779)
.-++++||+........-.+...+. ..|..||+|++... +.+.+...-++++++++.++-..++.+.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3478899995321111112222222 23668999988532 22333444589999999999888887765421
Q ss_pred CCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 040735 366 RDFNIPQSLKEVAEKIVKKCKGLPLAAKT 394 (779)
Q Consensus 366 ~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 394 (779)
....+ +++..-|++.+.|.--.+.-
T Consensus 164 -~l~l~---~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 164 -SVTIS---RQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred -CCCCC---HHHHHHHHHHccCCHHHHHH
Confidence 11222 36677788888776554443
No 135
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.83 E-value=0.00047 Score=68.04 Aligned_cols=179 Identities=17% Similarity=0.165 Sum_probs=100.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+|+|.++-++.+.-.+..... .++.+--+.++|++|.||||||.-+.+. ....+. ++-.....-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHH
Confidence 4799999999888877765443 4556788999999999999999999883 333321 11111111111222223
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccC--------CCCCCCc-----------EE
Q 040735 265 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPF--------GAGAFGS-----------KI 325 (779)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l--------~~~~~gs-----------~I 325 (779)
..+.. .=++++|.++.-....-+-+..++ -..++++ -|
T Consensus 99 t~Le~-----------------------~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 99 TNLEE-----------------------GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred hcCCc-----------------------CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 22222 224445555332211111111100 0112222 34
Q ss_pred EEEcCchhhHhhhcc--cccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 040735 326 VVTHRNQGVAETMRA--VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 397 (779)
Q Consensus 326 ivTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 397 (779)
=-|||.-.+.+.+.. ..+.+++--+.+|-.++..+.+..-.. +-..+.+.+|+++..|-|--..-+-+
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 458887655443332 245678888889988888877632221 12236688999999999965444443
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00057 Score=78.03 Aligned_cols=198 Identities=15% Similarity=0.150 Sum_probs=108.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+++..-.. ...... ..........+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHh
Confidence 468899999999999886432 23467899999999999999987632111 000000 01111111222221
Q ss_pred HHhhcCC----CCCcccHHHHHHHHHHH----hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEE-EcCchhhH
Q 040735 265 NSIASDQ----CTDKDDLNLLQEKLKKQ----LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVV-THRNQGVA 335 (779)
Q Consensus 265 ~~l~~~~----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~v~ 335 (779)
....... .......+.+.+.+... ..+++-++|+|++.......++.+...+-.....+.+|+ |+....+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 1111100 00112222332222211 124566899999976555667777666654434455554 44433333
Q ss_pred hhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 336 ETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 336 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
..+ .....+.+.+++.++....+...+..... ... .+.+..|++.++|.+..+....
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~is---~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-EIE---PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 322 23356788899998888777665532211 111 2557789999999886554443
No 137
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.0005 Score=72.31 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=65.6
Q ss_pred CCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch-hhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCC
Q 040735 291 GKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ-GVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDF 368 (779)
Q Consensus 291 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 368 (779)
+++-++|+|++...+....+.+...+-.-..++.+|+||.+. .+..++ .....+.+.+++.+++.+.+...... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C--
Confidence 344556789998777777788877776555567777777665 344332 33467899999999999888764311 1
Q ss_pred CCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 369 NIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 369 ~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
..+.+..++..++|.|+.+..+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233567788999999765554
No 138
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.78 E-value=0.00015 Score=86.34 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=84.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc---ccccc-CceEEEEeCCCCCHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDR---VQRHF-QIKSWTCVFEDFDVFRVS 260 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~~~~~~~~~~~ 260 (779)
.+++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... ...+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 358999999999999996543 23456999999999999999877421 11111 233442 1 111111
Q ss_pred HHHHHHhhcCCCCCcccHHH-HHHHHHHHhCCCeEEEEEeCCcCC-------ChhhhhhhcccCCCCCCCcEEEEEcCch
Q 040735 261 KLILNSIASDQCTDKDDLNL-LQEKLKKQLSGKKFLVVLDDVWNE-------NYNSWRALSCPFGAGAFGSKIVVTHRNQ 332 (779)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdvw~~-------~~~~~~~l~~~l~~~~~gs~IivTtR~~ 332 (779)
.+... ..+.++ +...+.+.-..++.+|++|++..- ...+...+..+....+ .-++|.+|...
T Consensus 248 -------ag~~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ 317 (821)
T CHL00095 248 -------AGTKY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLD 317 (821)
T ss_pred -------ccCCC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHH
Confidence 11111 112222 222332222457899999999421 0011112222221121 24566666655
Q ss_pred hhHhh-------hcccccccCCCCChHHHHHHHHH
Q 040735 333 GVAET-------MRAVSTKTLKELSDDDCLRVLIQ 360 (779)
Q Consensus 333 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~ 360 (779)
..... ......+.+.+.+.++...++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 43221 12335678888899998888764
No 139
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.77 E-value=0.00016 Score=74.15 Aligned_cols=167 Identities=18% Similarity=0.185 Sum_probs=101.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 263 (779)
++.|.+|+.++..+..++...+. .-+..|.|.|..|.|||.+.+.+.+.. .. ..+|+++.+.++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHH
Confidence 45688999999999998865442 235566899999999999999999854 22 24899999999999999999
Q ss_pred HHHhh-cCCCCCc-----ccHHHHHHHHHH--Hh--CCCeEEEEEeCCcCCChhhhhhhc-cc---CCC--CCCCcEEEE
Q 040735 264 LNSIA-SDQCTDK-----DDLNLLQEKLKK--QL--SGKKFLVVLDDVWNENYNSWRALS-CP---FGA--GAFGSKIVV 327 (779)
Q Consensus 264 l~~l~-~~~~~~~-----~~~~~~~~~l~~--~l--~~k~~LlVlDdvw~~~~~~~~~l~-~~---l~~--~~~gs~Iiv 327 (779)
+.+.. ....... ......+..+.+ .. +++.++||||++.. ..+.+... .. +.. ..+ .-.|+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~--lrD~~a~ll~~l~~L~el~~~~-~i~ii 153 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA--LRDMDAILLQCLFRLYELLNEP-TIVII 153 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh--hhccchHHHHHHHHHHHHhCCC-ceEEE
Confidence 99985 2221111 112222333333 11 24689999999943 22222211 10 110 112 22334
Q ss_pred EcCchhhH---hhhccc--ccccCCCCChHHHHHHHHHh
Q 040735 328 THRNQGVA---ETMRAV--STKTLKELSDDDCLRVLIQH 361 (779)
Q Consensus 328 TtR~~~v~---~~~~~~--~~~~l~~L~~~~~~~lf~~~ 361 (779)
++-..... ..++.. .++..+.-+.+|...++.+.
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 43322111 112322 34567778888988888653
No 140
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.77 E-value=3.4e-06 Score=73.37 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=75.8
Q ss_pred cccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccc
Q 040735 567 VERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYN 645 (779)
Q Consensus 567 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~ 645 (779)
...|....+.++. -.++|+.+. .++.++.|+|++|.|+++|..+..++.|+.|+++.|.+...|.-|..|.+
T Consensus 52 ~~el~~i~ls~N~-------fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 52 GYELTKISLSDNG-------FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIK 124 (177)
T ss_pred CceEEEEecccch-------hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHh
Confidence 3445555555543 145677777 88899999999999999999999999999999999999999999999999
Q ss_pred cceeeccCCcchhhchhhh
Q 040735 646 LHTILLEDCRRLKKLCKNM 664 (779)
Q Consensus 646 L~~L~l~~~~~~~~lp~~~ 664 (779)
|-.|+..+| ...++|..+
T Consensus 125 l~~Lds~~n-a~~eid~dl 142 (177)
T KOG4579|consen 125 LDMLDSPEN-ARAEIDVDL 142 (177)
T ss_pred HHHhcCCCC-ccccCcHHH
Confidence 999999998 777787764
No 141
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.76 E-value=0.00041 Score=71.75 Aligned_cols=132 Identities=13% Similarity=0.064 Sum_probs=69.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCe
Q 040735 214 VISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKK 293 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 293 (779)
-+.++|++|+|||++|+.+.............-|+.++. .+ ++..+.... .......+.+. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~------~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT------APKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc------hHHHHHHHHHc---cC
Confidence 578999999999999977765221111111223444442 11 222221111 11222223322 23
Q ss_pred EEEEEeCCcCC---------ChhhhhhhcccCCCCCCCcEEEEEcCchhhHhhhc--------ccccccCCCCChHHHHH
Q 040735 294 FLVVLDDVWNE---------NYNSWRALSCPFGAGAFGSKIVVTHRNQGVAETMR--------AVSTKTLKELSDDDCLR 356 (779)
Q Consensus 294 ~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~--------~~~~~~l~~L~~~~~~~ 356 (779)
-+|+||++..- ....+..+...+.....+.+||.++.......... -...+.+++++.+|...
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 68999999521 11223334444444444567777765432221111 12468899999999999
Q ss_pred HHHHhh
Q 040735 357 VLIQHS 362 (779)
Q Consensus 357 lf~~~a 362 (779)
++...+
T Consensus 203 I~~~~l 208 (284)
T TIGR02880 203 IAGLML 208 (284)
T ss_pred HHHHHH
Confidence 887765
No 142
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00077 Score=76.79 Aligned_cols=195 Identities=17% Similarity=0.157 Sum_probs=105.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+..--..... ..+......-+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999886432 235668999999999999998875321100000 00000000000000
Q ss_pred HH-------hhcCCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEE-EEcCchhhH
Q 040735 265 NS-------IASDQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIV-VTHRNQGVA 335 (779)
Q Consensus 265 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~v~ 335 (779)
.. +.........++.++.+.+... ..+++-++|+|++...+....+.+...+-.....+.+| +||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000000111222222222211 13455689999996655556666766665444455555 455555554
Q ss_pred hhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh-HHHHHH
Q 040735 336 ETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP-LAAKTL 395 (779)
Q Consensus 336 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~ 395 (779)
..+ .....+++.+++.++....+...+-.... . -..+....|++.++|.. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~---i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI-S---ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 332 23467889999999988877665432211 1 12355778889999876 444444
No 143
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.0011 Score=75.09 Aligned_cols=193 Identities=16% Similarity=0.133 Sum_probs=105.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+...+.+..++.... -...+.++|+.|+||||+|+.+....-....-+ ..+.+....-+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999986543 235677899999999999998865211000000 00111111111111
Q ss_pred HHhh-------cCCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEE-EEcCchhhH
Q 040735 265 NSIA-------SDQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIV-VTHRNQGVA 335 (779)
Q Consensus 265 ~~l~-------~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~v~ 335 (779)
.... ........++.++.+.+... ..++.-++|+|++..-....+..+...+........+| .||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 1000 00000111122222222211 24566788999997655566777766554433344444 455444443
Q ss_pred hhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 040735 336 ETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 393 (779)
Q Consensus 336 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 393 (779)
..+ .....+.+.+++.++....+...+-.... .. ..+....|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i---~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGI-EY---EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHH
Confidence 332 23356888999999988888776532221 11 12557778889998876544
No 144
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.73 E-value=0.00061 Score=74.78 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=90.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccC--ceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQ--IKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL 289 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 289 (779)
...+.|+|++|+|||+|++++++. +..... .+++++ ..+....+...+... ..+.. .+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~------~~~~~----~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS------SEKFTNDFVNALRNN------KMEEF----KEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE------HHHHHHHHHHHHHcC------CHHHH----HHHH
Confidence 456899999999999999999984 322221 334553 233444455544322 12222 2233
Q ss_pred CCCeEEEEEeCCcCCChh-hh-hhhcccCCCC-CCCcEEEEEcCch-h--------hHhhhcccccccCCCCChHHHHHH
Q 040735 290 SGKKFLVVLDDVWNENYN-SW-RALSCPFGAG-AFGSKIVVTHRNQ-G--------VAETMRAVSTKTLKELSDDDCLRV 357 (779)
Q Consensus 290 ~~k~~LlVlDdvw~~~~~-~~-~~l~~~l~~~-~~gs~IivTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~l 357 (779)
.+ .-+|||||+...... .+ +.+...+... ..|..+|+|+... . +...+.....+.+.+.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 22 348999999542111 11 1222222111 1245688887642 1 122222335688999999999999
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 040735 358 LIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 393 (779)
Q Consensus 358 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 393 (779)
+.+.+..... ..+ .++...|++.+.|..-.+.
T Consensus 277 l~~~~~~~~~-~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGL-ELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHH
Confidence 9888744221 222 3667788888888765443
No 145
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.73 E-value=0.00015 Score=77.76 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=71.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.++++.+...+.+...|... +.+.++|++|+|||++|+.+++.......|..+.||++...++..+.+..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788899999999998643 4678899999999999999987544445677888999999888766653221
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHh--CCCeEEEEEeCCcCCC
Q 040735 265 NSIASDQCTDKDDLNLLQEKLKKQL--SGKKFLVVLDDVWNEN 305 (779)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~ 305 (779)
.....-.....-..+.+.... .+++++||+|++...+
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 110000000111222222222 2478999999995544
No 146
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.0013 Score=74.40 Aligned_cols=189 Identities=16% Similarity=0.095 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc---ccCceEEEEeCCCCCHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQR---HFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~~~~~~~~~~~~ 261 (779)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+.+..-... .++|. .. ..-+
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~------~C----~~C~ 80 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG------EC----SSCK 80 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc------cc----hHHH
Confidence 468999999999999996533 245688999999999999999876321110 01110 00 0001
Q ss_pred HHHHH-------hhcCCCCCcccHHHHHHHH---HH-HhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcC
Q 040735 262 LILNS-------IASDQCTDKDDLNLLQEKL---KK-QLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHR 330 (779)
Q Consensus 262 ~il~~-------l~~~~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR 330 (779)
.|... +.+. .....+++.+.. .. -..+++-++|+|++...+...++.+...+......+.+|++|.
T Consensus 81 ~i~~~~~~dv~~idga---s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 81 SIDNDNSLDVIEIDGA---SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred HHHcCCCCCeEEecCc---ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecC
Confidence 11100 0000 011222222221 11 1235666899999976666667777766665444556655554
Q ss_pred -chhhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 331 -NQGVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 331 -~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
...+...+ .....+++.+++.++....+.+.+..... . -..+.+..|++.++|.+-.+...
T Consensus 158 e~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~---id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 158 EVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-K---YEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred ChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 33443322 22356889999999998888776543221 1 12356777889999988544433
No 147
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.0011 Score=72.82 Aligned_cols=155 Identities=13% Similarity=0.108 Sum_probs=85.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSG 291 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 291 (779)
...+.|+|++|+|||+|++.+.+.. ...-..+++++ ...+...+...+... . .+.++..+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~------~~~f~~~~~~~l~~~------~----~~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVR------SELFTEHLVSAIRSG------E----MQRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEee------HHHHHHHHHHHHhcc------h----HHHHHHHcc-
Confidence 4568899999999999999999843 22222334443 233444444444321 1 122333333
Q ss_pred CeEEEEEeCCcCCChhhh--hhhcccCCCC-CCCcEEEEEcCch---------hhHhhhcccccccCCCCChHHHHHHHH
Q 040735 292 KKFLVVLDDVWNENYNSW--RALSCPFGAG-AFGSKIVVTHRNQ---------GVAETMRAVSTKTLKELSDDDCLRVLI 359 (779)
Q Consensus 292 k~~LlVlDdvw~~~~~~~--~~l~~~l~~~-~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 359 (779)
+.-+|++||+.......+ +.+...+... ..|..||+||... .+...+.....+.+.+++.++...++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 344888999854221111 1222222110 1255788888642 122233344678899999999999998
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHcCCCh
Q 040735 360 QHSLGARDFNIPQSLKEVAEKIVKKCKGLP 389 (779)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P 389 (779)
+++-... ...+ .++..-|+..+.|.-
T Consensus 282 ~k~~~~~-~~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALS-IRIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcC-CCCC---HHHHHHHHHhcCCCH
Confidence 8774322 1222 255555666666443
No 148
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.00044 Score=76.14 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=91.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccc-C-ceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHF-Q-IKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL 289 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 289 (779)
...+.|+|++|+|||+|++.+++. +...+ . .++|++. .+....+...+... ..+. +++.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~----f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNE----FREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHH----HHHHH
Confidence 446999999999999999999984 33332 2 3455543 34555555555321 1222 22333
Q ss_pred CCCeEEEEEeCCcCCC-hhhh-hhhcccCCC-CCCCcEEEEEcC-chhh--------HhhhcccccccCCCCChHHHHHH
Q 040735 290 SGKKFLVVLDDVWNEN-YNSW-RALSCPFGA-GAFGSKIVVTHR-NQGV--------AETMRAVSTKTLKELSDDDCLRV 357 (779)
Q Consensus 290 ~~k~~LlVlDdvw~~~-~~~~-~~l~~~l~~-~~~gs~IivTtR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~l 357 (779)
..+.-+|++||+.... ...+ +.+...+.. ...|..||+||. ...- ...+.....+.+.+.+.+.-..+
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 3345689999995321 1111 122222211 112457888885 3221 12223345778999999999999
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 040735 358 LIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 393 (779)
Q Consensus 358 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 393 (779)
+.+.+.... ...+ .++...|++.+.|.--.+.
T Consensus 272 L~~~~~~~~-~~l~---~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 272 ARKMLEIEH-GELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHhcC-CCCC---HHHHHHHHhccccCHHHHH
Confidence 988764322 1222 3667788888887654433
No 149
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0011 Score=69.36 Aligned_cols=199 Identities=16% Similarity=0.112 Sum_probs=112.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-------------ccccCceEEEEeC
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRV-------------QRHFQIKSWTCVF 251 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~~~ 251 (779)
.+++|.+..++.+...+..+. -.....++|+.|+||+++|..+.+..-- ...++...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 368899999999999986543 2368889999999999999877542100 1223344554321
Q ss_pred CCCCHHHHHHHHHHHhhcCCC-CCcccHHHHHHHHHHHh-----CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEE
Q 040735 252 EDFDVFRVSKLILNSIASDQC-TDKDDLNLLQEKLKKQL-----SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKI 325 (779)
Q Consensus 252 ~~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I 325 (779)
...+-..+...-++..+.... ...-.+++. +.+.+.+ .+++-++|+|++...+......+...+-......-|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 100000011111111110000 011122222 2233333 356679999999766666666776666444333445
Q ss_pred EEEcCchhhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 326 VVTHRNQGVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 326 ivTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
++|+....+..++ .....+.+.+++.++..+.+.+...... .......++..++|.|..+....
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHHH
Confidence 5555544444433 3347899999999999999987642111 01113578899999997665443
No 150
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=1.3e-06 Score=95.47 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=39.2
Q ss_pred CCCccEEEecCCCCCccCccccCCCccceEecccccccccccc-cccccccceeeccCCcchhhchhhhcCccccceeec
Q 040735 597 LPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPES-INSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRN 675 (779)
Q Consensus 597 l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 675 (779)
++.|+.|+|++|++++.- .+..|.+|++|||++|.+..+|.- ...+ +|+.|++++| .+.++ .++.+|.+|++||+
T Consensus 186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhh-hhHHhhhhhhccch
Confidence 344555555555555442 445555555555555555555431 1122 2555555555 44444 23555555555555
Q ss_pred CCCc
Q 040735 676 PNVH 679 (779)
Q Consensus 676 ~~~~ 679 (779)
+.|-
T Consensus 262 syNl 265 (1096)
T KOG1859|consen 262 SYNL 265 (1096)
T ss_pred hHhh
Confidence 5554
No 151
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.64 E-value=0.0011 Score=73.79 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=91.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccC--ceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQ--IKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL 289 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 289 (779)
...+.|+|++|+|||+|++.+.+. ....++ .+++++. .++...+...+... ..+ .+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~----~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN------TME----EFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC------cHH----HHHHHH
Confidence 456899999999999999999984 333332 2344433 23334444444321 122 223333
Q ss_pred CCCeEEEEEeCCcCCChhh--hhhhcccCCC-CCCCcEEEEEcCchh---------hHhhhcccccccCCCCChHHHHHH
Q 040735 290 SGKKFLVVLDDVWNENYNS--WRALSCPFGA-GAFGSKIVVTHRNQG---------VAETMRAVSTKTLKELSDDDCLRV 357 (779)
Q Consensus 290 ~~k~~LlVlDdvw~~~~~~--~~~l~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 357 (779)
+ +.-+|||||+....... .+.+...+.. ...|..||+||.... +...+.....+.+.+.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 24489999995421111 1222222211 112456888886531 223333445789999999999999
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 040735 358 LIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 393 (779)
Q Consensus 358 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 393 (779)
+.+.+-... ...+ .++...|++.+.|..-.+.
T Consensus 289 l~~~~~~~~-~~l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEG-IDLP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcC-CCCC---HHHHHHHHcCcCCCHHHHH
Confidence 998875321 1222 3668888888888876443
No 152
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.00083 Score=75.20 Aligned_cols=158 Identities=15% Similarity=0.182 Sum_probs=90.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccc--CceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHF--QIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLS 290 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 290 (779)
..+.|+|..|+|||.|++.+++. ....+ ..+++++ ..++..++...+... ..+ .+++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~------~~~----~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDG------KGD----SFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhc------cHH----HHHHHhh
Confidence 45899999999999999999984 32222 1234443 233444444443221 111 2333333
Q ss_pred CCeEEEEEeCCcCCCh-hhhh-hhcccCCCC-CCCcEEEEEcCch---------hhHhhhcccccccCCCCChHHHHHHH
Q 040735 291 GKKFLVVLDDVWNENY-NSWR-ALSCPFGAG-AFGSKIVVTHRNQ---------GVAETMRAVSTKTLKELSDDDCLRVL 358 (779)
Q Consensus 291 ~k~~LlVlDdvw~~~~-~~~~-~l~~~l~~~-~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 358 (779)
+ .=+|||||+..... ..|. .+...+... ..|..|||||+.. .+...+...-++.|.+.+.+.-..++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 34888999954321 2222 222222211 2355688888752 23334445568899999999999999
Q ss_pred HHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 040735 359 IQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 393 (779)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 393 (779)
.+++.... ...+ .++..-|++.+.+..-.+.
T Consensus 456 ~kka~~r~-l~l~---~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 456 RKKAVQEQ-LNAP---PEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHhcC-CCCC---HHHHHHHHHhccCCHHHHH
Confidence 98874332 1222 3667777777776654433
No 153
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00016 Score=84.10 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=85.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc---cc-cCceEEEEeCCCCCHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQ---RH-FQIKSWTCVFEDFDVFRVS 260 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~-F~~~~wv~~~~~~~~~~~~ 260 (779)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++..... .. ..+.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-
Confidence 358999999999999997632 1344689999999999999988632111 11 13334421 11111
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHh-CCCeEEEEEeCCcCC--------ChhhhhhhcccCCCCCCCcEEEEEcCc
Q 040735 261 KLILNSIASDQCTDKDDLNLLQEKLKKQL-SGKKFLVVLDDVWNE--------NYNSWRALSCPFGAGAFGSKIVVTHRN 331 (779)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~gs~IivTtR~ 331 (779)
+ .+.. ...+.+.....+.+.+ +.++.+|++|++..- ...+...+..++...+ .-++|-+|..
T Consensus 254 ---l---aG~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~ 324 (758)
T PRK11034 254 ---L---AGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTY 324 (758)
T ss_pred ---h---cccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCCh
Confidence 1 0111 0112222222222222 346789999999421 1122222333332222 3455555554
Q ss_pred hhhHhh-------hcccccccCCCCChHHHHHHHHHhh
Q 040735 332 QGVAET-------MRAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 332 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
.+.... ......+.+++++.++...++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 443211 1233578999999999999988643
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.62 E-value=0.00067 Score=81.24 Aligned_cols=157 Identities=14% Similarity=0.127 Sum_probs=83.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc---c-cCceEEEEeCCCCCHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQR---H-FQIKSWTCVFEDFDVFRVS 260 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~~~~~~~~~~~~ 260 (779)
.+++||+.++++++..|.... ..-+.++|++|+|||++|+.+.....-.. . ....+|.. +...+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGAL- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHH-
Confidence 459999999999999996543 24456899999999999998876321110 0 11223321 11111
Q ss_pred HHHHHHhhcCCCCCcccHH-HHHHHHHHHhC-CCeEEEEEeCCcCCC-------hhhhhhhcccCCCCCCCcEEEEEcCc
Q 040735 261 KLILNSIASDQCTDKDDLN-LLQEKLKKQLS-GKKFLVVLDDVWNEN-------YNSWRALSCPFGAGAFGSKIVVTHRN 331 (779)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~-~~~~~l~~~l~-~k~~LlVlDdvw~~~-------~~~~~~l~~~l~~~~~gs~IivTtR~ 331 (779)
+. ... ...+.+ .+...+...-+ +++.+|++|++..-. ..+...+..+....+ .-++|-+|..
T Consensus 241 ---~a---~~~--~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~ 311 (852)
T TIGR03346 241 ---IA---GAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTL 311 (852)
T ss_pred ---hh---cch--hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcH
Confidence 10 000 011122 22222222222 468999999995311 011112222222222 2445555554
Q ss_pred hhhHhh-------hcccccccCCCCChHHHHHHHHHhh
Q 040735 332 QGVAET-------MRAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 332 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
...... ......+.++..+.++...++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 433211 1223567889999999999887653
No 155
>PRK08116 hypothetical protein; Validated
Probab=97.56 E-value=0.00028 Score=72.20 Aligned_cols=104 Identities=21% Similarity=0.200 Sum_probs=58.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
..+.++|.+|+|||.||.++++.. ...-..+++++ ..+++..+....... ...+... +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~---~~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSS---GKEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhcc---ccccHHH----HHHHhcCC
Confidence 458899999999999999999843 22223345554 334444444443321 1112222 22334433
Q ss_pred eEEEEEeCCcCCChhhhhh--hcccCCCC-CCCcEEEEEcCch
Q 040735 293 KFLVVLDDVWNENYNSWRA--LSCPFGAG-AFGSKIVVTHRNQ 332 (779)
Q Consensus 293 ~~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~IivTtR~~ 332 (779)
. ||||||+..+...+|.. +...+... ..+..+||||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3 89999996544445543 22222211 2456799999754
No 156
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.55 E-value=0.00014 Score=65.82 Aligned_cols=21 Identities=48% Similarity=0.566 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 040735 215 ISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 215 v~I~G~gGiGKTtLa~~v~~~ 235 (779)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 578999999999999999984
No 157
>PRK10536 hypothetical protein; Provisional
Probab=97.54 E-value=0.0016 Score=64.70 Aligned_cols=136 Identities=13% Similarity=0.139 Sum_probs=74.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEE----eCC-----CC
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTC----VFE-----DF 254 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----~~~-----~~ 254 (779)
...+.++......+..++... .++.+.|++|+|||+||.++..+.-..+.|..++-+. ..+ +-
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCC
Confidence 345678888888888888532 4899999999999999988776322233344332221 111 01
Q ss_pred CHHH----HHHHHHHHhhcCCCCCcccHHHHHH--------HHHHHhCCCeE---EEEEeCCcCCChhhhhhhcccCCCC
Q 040735 255 DVFR----VSKLILNSIASDQCTDKDDLNLLQE--------KLKKQLSGKKF---LVVLDDVWNENYNSWRALSCPFGAG 319 (779)
Q Consensus 255 ~~~~----~~~~il~~l~~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdvw~~~~~~~~~l~~~l~~~ 319 (779)
+..+ .+..+...+..-. .....+.... .-..+++|+.+ +||+|.+.+-+..+...+.. ..
T Consensus 126 ~~~eK~~p~~~pi~D~L~~~~--~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~ 200 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVLVRRL--GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RL 200 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hc
Confidence 1111 1122222221110 0011111100 00235566655 99999997766555544443 34
Q ss_pred CCCcEEEEEcCch
Q 040735 320 AFGSKIVVTHRNQ 332 (779)
Q Consensus 320 ~~gs~IivTtR~~ 332 (779)
+.+|++|+|--..
T Consensus 201 g~~sk~v~~GD~~ 213 (262)
T PRK10536 201 GENVTVIVNGDIT 213 (262)
T ss_pred CCCCEEEEeCChh
Confidence 5689999987654
No 158
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0024 Score=66.64 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=64.9
Q ss_pred CCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCc-hhhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCC
Q 040735 291 GKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRN-QGVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDF 368 (779)
Q Consensus 291 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 368 (779)
+++-++|+|++...+...-..+...+-.-..++.+|++|.+ ..+..++ .....+.+.+++.+++...+.+..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 45679999999766666666677666655556766666664 3444333 234678899999999988886531
Q ss_pred CCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 369 NIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 369 ~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
.+ ...+..++..++|.|+.+..+.
T Consensus 186 -~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 -VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1235678999999998765544
No 159
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.52 E-value=0.0013 Score=70.05 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=82.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLS 290 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 290 (779)
....+.|+|..|.|||.|++++.+ ......+....+.+ +.+.....++..+... -.+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~----~se~f~~~~v~a~~~~----------~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL----TSEDFTNDFVKALRDN----------EMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec----cHHHHHHHHHHHHHhh----------hHHHHHHhh-
Confidence 467899999999999999999998 34444443333333 2333444444444321 123444444
Q ss_pred CCeEEEEEeCCcCCCh-hhhh-h---hcccCCCCCCCcEEEEEcCch---------hhHhhhcccccccCCCCChHHHHH
Q 040735 291 GKKFLVVLDDVWNENY-NSWR-A---LSCPFGAGAFGSKIVVTHRNQ---------GVAETMRAVSTKTLKELSDDDCLR 356 (779)
Q Consensus 291 ~k~~LlVlDdvw~~~~-~~~~-~---l~~~l~~~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 356 (779)
.-=++++||++.-.. +.|. . +...+... |-.||+|++.. .+...+...-++.+.+.+.+....
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 334889999954211 1222 2 22333333 44899999642 334455556789999999999999
Q ss_pred HHHHhhcCC
Q 040735 357 VLIQHSLGA 365 (779)
Q Consensus 357 lf~~~a~~~ 365 (779)
++.+++...
T Consensus 252 iL~kka~~~ 260 (408)
T COG0593 252 ILRKKAEDR 260 (408)
T ss_pred HHHHHHHhc
Confidence 999876443
No 160
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=6.9e-05 Score=86.26 Aligned_cols=106 Identities=21% Similarity=0.290 Sum_probs=67.0
Q ss_pred CccceEeccccccc--ccccccc-cccccceeeccCCcc-hhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcc
Q 040735 621 KHLRFLNLSRTNIQ--ILPESIN-SLYNLHTILLEDCRR-LKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLT 696 (779)
Q Consensus 621 ~~L~~L~l~~n~i~--~lp~~~~-~L~~L~~L~l~~~~~-~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~ 696 (779)
.+|++|+++|...- .-|..++ -|++|++|.+++-.. ..++-.-..++++|..||+++++ +..+ .++++|++||.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 45666666664322 2333443 467777777776311 11222334567788888888877 5555 67888888888
Q ss_pred cCceeeCCCCCCCchhhhccccccceeEEcccC
Q 040735 697 LSRFVVGKDSGSGLRELKSLMHLQGTLQISKLE 729 (779)
Q Consensus 697 L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~ 729 (779)
|...+....+...+.+|=+|++|+ .|+++.-.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~-vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLR-VLDISRDK 231 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCC-eeeccccc
Confidence 877766665556677777788887 78777643
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.51 E-value=0.0015 Score=77.95 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.+++||+.+++++++.|.... ..-+.++|++|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999996543 245668999999999999988763
No 162
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=9.1e-05 Score=85.31 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=80.1
Q ss_pred ccccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCccCccccCCCccceEecccccccccc--ccccc
Q 040735 566 DVERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILP--ESINS 642 (779)
Q Consensus 566 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp--~~~~~ 642 (779)
.+++|++|.+.+-. +...-...++ ++++|+.||+++++++.+ ..+++|++|+.|.+++=.+..-+ ..+.+
T Consensus 146 ~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred hCcccceEEecCce------ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence 57889999888754 2233345566 999999999999999988 77899999999999887766433 35788
Q ss_pred ccccceeeccCCcchhh--chh----hhcCccccceeecCCCc
Q 040735 643 LYNLHTILLEDCRRLKK--LCK----NMGNLMKLHHLRNPNVH 679 (779)
Q Consensus 643 L~~L~~L~l~~~~~~~~--lp~----~~~~l~~L~~L~l~~~~ 679 (779)
|++|++||+|....... +.. .-..|++|+.||.+++.
T Consensus 219 L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 99999999997532211 111 12358899999999876
No 163
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.44 E-value=0.0095 Score=70.83 Aligned_cols=51 Identities=31% Similarity=0.436 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..++|.+..+++|.+++.........+..++.++|++|+|||++|+.+.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999988765321111223358899999999999999999873
No 164
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0032 Score=66.73 Aligned_cols=149 Identities=8% Similarity=0.049 Sum_probs=88.6
Q ss_pred cccc-chhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc-------------------ccCce
Q 040735 186 EVYG-REKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQR-------------------HFQIK 245 (779)
Q Consensus 186 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 245 (779)
.++| -+..++.+...+..+. -.....++|+.|+||||+|..+.+..--.. .++..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 4566 6667777877775432 245678999999999999988855211000 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH----hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCC
Q 040735 246 SWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQ----LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAF 321 (779)
Q Consensus 246 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 321 (779)
.++.... ....++++.+.+... ..+++-++|+|++...+....+.+...+-....
T Consensus 81 ~~i~~~~---------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~ 139 (329)
T PRK08058 81 HLVAPDG---------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSG 139 (329)
T ss_pred EEecccc---------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCC
Confidence 1111100 111223332222211 234566899999976666666777777766556
Q ss_pred CcEEEEEcCch-hhHhhh-cccccccCCCCChHHHHHHHHH
Q 040735 322 GSKIVVTHRNQ-GVAETM-RAVSTKTLKELSDDDCLRVLIQ 360 (779)
Q Consensus 322 gs~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~ 360 (779)
++.+|++|.+. .+...+ .....+++.+++.++....+..
T Consensus 140 ~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 140 GTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 67777776654 333333 2346889999999999888865
No 165
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00018 Score=67.22 Aligned_cols=105 Identities=24% Similarity=0.264 Sum_probs=77.1
Q ss_pred CCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccc-cccccceeeccCCcchhhchh--hhcCccccce
Q 040735 596 NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESIN-SLYNLHTILLEDCRRLKKLCK--NMGNLMKLHH 672 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~-~L~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~ 672 (779)
-+.....+||++|.+..++ .|..+..|.+|.|.+|+|+.+-+.+. .+++|++|.|.+| .+.++-. .+..+++|++
T Consensus 40 ~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccce
Confidence 3456778899999888763 57778889999999999998866665 4567999999988 6666533 2567788999
Q ss_pred eecCCCcccccCCcc----cCCCCCCcccCceeeC
Q 040735 673 LRNPNVHSLEEMPKG----FGKLTCLLTLSRFVVG 703 (779)
Q Consensus 673 L~l~~~~~~~~~p~~----~~~L~~L~~L~~~~~~ 703 (779)
|.+-+|+ ...-+.- +..+++|++|+...+.
T Consensus 118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 9888887 4443322 6778888888754443
No 166
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.41 E-value=0.00071 Score=61.85 Aligned_cols=87 Identities=20% Similarity=0.049 Sum_probs=45.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC-
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSG- 291 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~- 291 (779)
..+.|+|++|+||||+++.++.... ......+++.............. ........ ...........+.+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL--LIIVGGKK-ASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH--hhhhhccC-CCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999987422 22123444544433322221111 11111111 112222223333333333
Q ss_pred CeEEEEEeCCcCC
Q 040735 292 KKFLVVLDDVWNE 304 (779)
Q Consensus 292 k~~LlVlDdvw~~ 304 (779)
+..+|++|++...
T Consensus 78 ~~~viiiDei~~~ 90 (148)
T smart00382 78 KPDVLILDEITSL 90 (148)
T ss_pred CCCEEEEECCccc
Confidence 3489999999654
No 167
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.40 E-value=0.00018 Score=76.24 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=33.8
Q ss_pred CCCCccEEEecCCCCCccCccccCCCccceEeccc-ccccccccccccccccceeeccCCcchhhchh
Q 040735 596 NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSR-TNIQILPESINSLYNLHTILLEDCRRLKKLCK 662 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~-n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~ 662 (779)
.+.+++.|++++|.++.+|. + ..+|+.|.+++ +.++.+|..+. .+|+.|++++|..+..+|.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 34556666666666666651 1 23466666654 34445554442 3566666666655555554
No 168
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.39 E-value=0.002 Score=71.21 Aligned_cols=167 Identities=11% Similarity=0.116 Sum_probs=88.5
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc---cccCceEEEEeCCCC
Q 040735 185 AEVYGREKDKEAIVELLLRDDS-------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQ---RHFQIKSWTCVFEDF 254 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~~~~~ 254 (779)
.++.|.+..+++|.+.+...-. -+-..++-+.++|++|+|||++|+.+++..... ..+....|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4578899999998887642110 011234568899999999999999999843211 01122344444331
Q ss_pred CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh-CCCeEEEEEeCCcCCC-------hhh-----hhhhcccCCCC--
Q 040735 255 DVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL-SGKKFLVVLDDVWNEN-------YNS-----WRALSCPFGAG-- 319 (779)
Q Consensus 255 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~-------~~~-----~~~l~~~l~~~-- 319 (779)
+ ++...... .......+.+..++.. .+++++|+||+++.-. ..+ ...+...+...
T Consensus 261 ---e----Ll~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 ---E----LLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred ---h----hcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 1 11110000 0111122222222222 3578999999995310 001 11222222211
Q ss_pred CCCcEEEEEcCchhhHh-hh----cccccccCCCCChHHHHHHHHHhh
Q 040735 320 AFGSKIVVTHRNQGVAE-TM----RAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 320 ~~gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
..+..||.||....... .+ .-+..+.++..+.++..++|..+.
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13455666665543322 11 113468999999999999998875
No 169
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.38 E-value=0.0037 Score=67.64 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=86.1
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDS-------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDV 256 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 256 (779)
-.++.|.+..+++|.+.+...-. -+-..++-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----
Confidence 34688999888888876632100 01234577889999999999999999873 22222 22211
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC-----------hh---hhhhhcccCCC--CC
Q 040735 257 FRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN-----------YN---SWRALSCPFGA--GA 320 (779)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-----------~~---~~~~l~~~l~~--~~ 320 (779)
..+ ..... ......+.+.+.......+.+|+||++..-. .. .+..+...+.. ..
T Consensus 213 s~l----~~k~~------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 SEF----VQKYL------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HHH----HHHhc------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111 11111 0111222233333335678999999974210 00 11122222211 12
Q ss_pred CCcEEEEEcCchhhHhh-h----cccccccCCCCChHHHHHHHHHhh
Q 040735 321 FGSKIVVTHRNQGVAET-M----RAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 321 ~gs~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
.+..||+||........ + .-...+.++..+.++...+|....
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 35678888876543221 1 123567888888888888887654
No 170
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.35 E-value=0.00098 Score=72.54 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=87.0
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDS-------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVF 257 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 257 (779)
.++.|.+..+++|.+.+.-.-. -+-...+-+.++|++|+|||++|+.+++. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 4578999999988887742110 01123456889999999999999999983 33333 222111
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC-----------hh---hhhhhcccCCC--CCC
Q 040735 258 RVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN-----------YN---SWRALSCPFGA--GAF 321 (779)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-----------~~---~~~~l~~~l~~--~~~ 321 (779)
++ ..... ......+...+.....+.+.+|+||++..-. .. ....+...+.. ...
T Consensus 252 eL----~~k~~------Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 252 EL----IQKYL------GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred hh----hhhhc------chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 11 11110 1111122223333334678899999973210 00 01111111111 123
Q ss_pred CcEEEEEcCchhhHhh-h----cccccccCCCCChHHHHHHHHHhhc
Q 040735 322 GSKIVVTHRNQGVAET-M----RAVSTKTLKELSDDDCLRVLIQHSL 363 (779)
Q Consensus 322 gs~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~ 363 (779)
+..||+||........ + .-...+.+...+.++..++|..+..
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 5678888876543322 1 1235788999999999999987653
No 171
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.35 E-value=0.0021 Score=60.39 Aligned_cols=139 Identities=15% Similarity=0.133 Sum_probs=77.4
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc---cc---------------cccCceEEEEe
Q 040735 189 GREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDR---VQ---------------RHFQIKSWTCV 250 (779)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~---------------~~F~~~~wv~~ 250 (779)
|-+...+.+...+.... -...+.++|+.|+||+++|..+.+..- .. ...+...|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 55667777777775443 235678999999999999988765211 00 12333344433
Q ss_pred CCC---CCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEE
Q 040735 251 FED---FDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVV 327 (779)
Q Consensus 251 ~~~---~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv 327 (779)
... ...+++ +.+...+..... .++.=++|+||+.......+..++..+-.....+.+|+
T Consensus 76 ~~~~~~i~i~~i-r~i~~~~~~~~~-----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 76 DKKKKSIKIDQI-REIIEFLSLSPS-----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp TTSSSSBSHHHH-HHHHHHCTSS-T-----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred ccccchhhHHHH-HHHHHHHHHHHh-----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 222 122222 233333222211 34567999999988777888888888777667888888
Q ss_pred EcCchh-hHhhh-cccccccCCCCC
Q 040735 328 THRNQG-VAETM-RAVSTKTLKELS 350 (779)
Q Consensus 328 TtR~~~-v~~~~-~~~~~~~l~~L~ 350 (779)
+|++.. +...+ .....+.+.++|
T Consensus 138 ~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 138 ITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EES-GGGS-HHHHTTSEEEEE----
T ss_pred EECChHHChHHHHhhceEEecCCCC
Confidence 888764 33332 223455555543
No 172
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.34 E-value=0.0011 Score=75.13 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=40.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
-.+++|.++.++++..|+..... .....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35699999999999999875432 1223468999999999999999999863
No 173
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.01 Score=62.03 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=65.5
Q ss_pred CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch-hhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCC
Q 040735 290 SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ-GVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARD 367 (779)
Q Consensus 290 ~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 367 (779)
.+++-++|+|++...+......+...+-....++.+|++|.+. .+..++ .....+.+.+++.++..+.+.....
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~---- 180 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS---- 180 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc----
Confidence 3566788899998777777788887777666667777776654 444333 3346889999999999988876531
Q ss_pred CCCChhHHHHHHHHHHHcCCChHHH
Q 040735 368 FNIPQSLKEVAEKIVKKCKGLPLAA 392 (779)
Q Consensus 368 ~~~~~~~~~~~~~I~~~c~G~PLai 392 (779)
. .. ..+...+..++|.|+.+
T Consensus 181 -~-~~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 181 -A-EI---SEILTALRINYGRPLLA 200 (325)
T ss_pred -c-Ch---HHHHHHHHHcCCCHHHH
Confidence 1 11 12556678899999644
No 174
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.33 E-value=0.00023 Score=75.54 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=56.3
Q ss_pred ccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCC
Q 040735 617 IGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKL 691 (779)
Q Consensus 617 ~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L 691 (779)
+..+.++++|++++|.++.+|. -..+|+.|.+++|..+..+|..+. .+|++|++++|..+..+|.++..|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccceE
Confidence 4557899999999999999983 234699999999989988987663 689999999996577888764433
No 175
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.01 Score=58.18 Aligned_cols=181 Identities=17% Similarity=0.178 Sum_probs=104.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEe-CCCCCHHHHHHHHHHHhhcCCCC-CcccHHHHHHHHHHHh
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCV-FEDFDVFRVSKLILNSIASDQCT-DKDDLNLLQEKLKKQL 289 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l 289 (779)
.+++.++|.-|.|||.+++...... .+ +.++-+.+ ....+...+...++..+..+... -....++..+.+....
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~--~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASL--NE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhc--CC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 4699999999999999999544311 11 11111333 34456677777888877763221 1112333334444443
Q ss_pred -CCCe-EEEEEeCCcCCChhhhhhhcccCCCCCCCc---EEEEEcCch--------hhHhhhccccc-ccCCCCChHHHH
Q 040735 290 -SGKK-FLVVLDDVWNENYNSWRALSCPFGAGAFGS---KIVVTHRNQ--------GVAETMRAVST-KTLKELSDDDCL 355 (779)
Q Consensus 290 -~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs---~IivTtR~~--------~v~~~~~~~~~-~~l~~L~~~~~~ 355 (779)
++++ ..+++|+..+......+.++........++ +|+..-..+ .....-..... |++.|++.++..
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~ 206 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETG 206 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHH
Confidence 5666 899999997766556655544332211122 233322211 11111111234 899999999888
Q ss_pred HHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 040735 356 RVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 397 (779)
Q Consensus 356 ~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 397 (779)
.++..+.-+... ..+---.+....|..+..|.|.+|..++.
T Consensus 207 ~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 207 LYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 888776544322 22222335677889999999999987764
No 176
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.32 E-value=0.0089 Score=70.43 Aligned_cols=166 Identities=20% Similarity=0.204 Sum_probs=86.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 263 (779)
+.+.+|.++.+++|.++|............++.++|++|+||||+|+.+.. .....| .-++.+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccch
Confidence 346899999999999888632211122346799999999999999999986 233233 223333333332221111
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhh----hhhhcccCCC---------------CCCCcE
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNS----WRALSCPFGA---------------GAFGSK 324 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~----~~~l~~~l~~---------------~~~gs~ 324 (779)
-... ......+.+.+... ....-+++||.+..-.... ...+...+.. .-...-
T Consensus 396 ~~~~-------g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYI-------GSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccC-------CCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 0001 11112333333332 2234478899985422111 1222222211 012333
Q ss_pred EEEEcCchhhHhh-hcccccccCCCCChHHHHHHHHHhh
Q 040735 325 IVVTHRNQGVAET-MRAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 325 IivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
+|.|+....+... .....++.+.+++.++-.++..++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4445544322211 1223578888898888877776654
No 177
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=1.1e-05 Score=79.49 Aligned_cols=155 Identities=21% Similarity=0.120 Sum_probs=70.6
Q ss_pred ccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCC-CCCcc--CccccCCCccceEeccccccc-cc---
Q 040735 564 VSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGY-HISKL--PNEIGNLKHLRFLNLSRTNIQ-IL--- 636 (779)
Q Consensus 564 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l--p~~~~~l~~L~~L~l~~n~i~-~l--- 636 (779)
+..|.+|+.|.+.++. +...+-..+.+-..|+.|+|+++ .++.. .--+.+++.|..|+|++|.+. +.
T Consensus 206 Ls~C~kLk~lSlEg~~------LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv 279 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLR------LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV 279 (419)
T ss_pred HHHHHhhhhccccccc------cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH
Confidence 3455555555555543 33444444445555666666655 33321 122455556666666665433 11
Q ss_pred -ccccccccccceeeccCCcch---hhchhhhcCccccceeecCCCccccc-CCcccCCCCCCcccCceeeCCCCCCCch
Q 040735 637 -PESINSLYNLHTILLEDCRRL---KKLCKNMGNLMKLHHLRNPNVHSLEE-MPKGFGKLTCLLTLSRFVVGKDSGSGLR 711 (779)
Q Consensus 637 -p~~~~~L~~L~~L~l~~~~~~---~~lp~~~~~l~~L~~L~l~~~~~~~~-~p~~~~~L~~L~~L~~~~~~~~~~~~~~ 711 (779)
-..++ .+|..|+|+||... ..+..-..++++|.+||++.|..+.. .-..|.+++.|++|+++.+....+..+-
T Consensus 280 ~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~ 357 (419)
T KOG2120|consen 280 AVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLL 357 (419)
T ss_pred HHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHee
Confidence 11111 24555555554221 11111123455566666655542221 1122445555555555554444444444
Q ss_pred hhhccccccceeEEcc
Q 040735 712 ELKSLMHLQGTLQISK 727 (779)
Q Consensus 712 ~L~~L~~L~~~L~i~~ 727 (779)
++.....|. .|++.+
T Consensus 358 ~l~s~psl~-yLdv~g 372 (419)
T KOG2120|consen 358 ELNSKPSLV-YLDVFG 372 (419)
T ss_pred eeccCcceE-EEEecc
Confidence 455555554 454443
No 178
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.011 Score=61.63 Aligned_cols=93 Identities=18% Similarity=0.136 Sum_probs=65.5
Q ss_pred CCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch-hhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCC
Q 040735 291 GKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ-GVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDF 368 (779)
Q Consensus 291 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 368 (779)
++.-++|+|++...+....+.+...+-.-..++.+|++|.+. .+..++ .....+.+.+++.+++.+.+....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~------ 180 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG------ 180 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC------
Confidence 455689999997777777888887776666667666665554 444443 344688999999999998886531
Q ss_pred CCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 369 NIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 369 ~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
.. .+..++..++|.|+.+..+
T Consensus 181 -~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 181 -IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 01 1346788999999876555
No 179
>CHL00176 ftsH cell division protein; Validated
Probab=97.27 E-value=0.0031 Score=72.24 Aligned_cols=178 Identities=15% Similarity=0.212 Sum_probs=94.9
Q ss_pred CccccchhhHHHHHHHH---hcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHH
Q 040735 185 AEVYGREKDKEAIVELL---LRDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFR 258 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 258 (779)
.+++|.++.++++.+.+ ..... -+....+-|.++|++|+|||+||+.++... ... |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccHH----H
Confidence 45788877666655544 22211 012234668999999999999999998732 222 2333211 1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC----------hhh----hhhhcccCCC--CCCC
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN----------YNS----WRALSCPFGA--GAFG 322 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~----~~~l~~~l~~--~~~g 322 (779)
+. .... ......+...+.......+++|++||+..-. ... +..+...+.. ...+
T Consensus 252 f~----~~~~------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 252 FV----EMFV------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HH----HHhh------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 10 1000 0112233344455556788999999994210 011 1222222211 2245
Q ss_pred cEEEEEcCchhhHh-hh----cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCC
Q 040735 323 SKIVVTHRNQGVAE-TM----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL 388 (779)
Q Consensus 323 s~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~ 388 (779)
..||.||....... .+ .-...+.+...+.++-.++++.++.... .. .......+++.+.|.
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~--~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LS--PDVSLELIARRTPGF 387 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cc--hhHHHHHHHhcCCCC
Confidence 56777776644322 11 1235678888888888888887663311 11 123356677777773
No 180
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=1.7e-05 Score=78.08 Aligned_cols=155 Identities=19% Similarity=0.170 Sum_probs=92.8
Q ss_pred cceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCc-cCccccCCCccceEecccc-ccccc--ccccccc
Q 040735 569 RLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISK-LPNEIGNLKHLRFLNLSRT-NIQIL--PESINSL 643 (779)
Q Consensus 569 ~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n-~i~~l--p~~~~~L 643 (779)
+|+.+.+++.. ++......+. .+++|+-|.|.|+.+.+ +-..|.+=.+|+.|+|+.+ ++++- ---+.++
T Consensus 186 Rlq~lDLS~s~------it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSV------ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhh------eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence 35555555433 4444455554 77888888888888873 4456666778888888875 45532 2235678
Q ss_pred cccceeeccCCcchhhchhh-hcC-ccccceeecCCCccc---ccCCcccCCCCCCcccCceeeCCCCCCCchhhhcccc
Q 040735 644 YNLHTILLEDCRRLKKLCKN-MGN-LMKLHHLRNPNVHSL---EEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMH 718 (779)
Q Consensus 644 ~~L~~L~l~~~~~~~~lp~~-~~~-l~~L~~L~l~~~~~~---~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~ 718 (779)
+.|+.|+|+.|....+.-.. +.. =.+|..|+++|+... ..+..-....++|..|++..........+..+-+++.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 88888888888443332111 111 136777888877521 0111112456677777776665555556666777777
Q ss_pred ccceeEEcccCC
Q 040735 719 LQGTLQISKLEN 730 (779)
Q Consensus 719 L~~~L~i~~~~~ 730 (779)
|+ .|+++.+=.
T Consensus 340 L~-~lSlsRCY~ 350 (419)
T KOG2120|consen 340 LQ-HLSLSRCYD 350 (419)
T ss_pred he-eeehhhhcC
Confidence 76 677665533
No 181
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.24 E-value=0.0088 Score=61.26 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=34.7
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHH
Q 040735 192 KDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRV 259 (779)
Q Consensus 192 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 259 (779)
+-++++..++... ..|.+.|++|+|||+||+.+.. .... ..+++++....+..++
T Consensus 9 ~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHH
Confidence 3445566665432 3567899999999999999986 2222 2345555555554444
No 182
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.01 Score=66.01 Aligned_cols=105 Identities=25% Similarity=0.290 Sum_probs=68.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 263 (779)
+.+.+|.++-+++|.+++.-..-.+..+-+++..+|++|||||.+|+.++. .....| +-++++.-.|..++--.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGH- 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGH- 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhccc-
Confidence 456789999999999998644332344568999999999999999999987 444555 23566666665544211
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCC
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDV 301 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 301 (779)
..+. -..-...+++.|+.. +...-|+.||.|
T Consensus 484 -----RRTY-VGAMPGkiIq~LK~v-~t~NPliLiDEv 514 (906)
T KOG2004|consen 484 -----RRTY-VGAMPGKIIQCLKKV-KTENPLILIDEV 514 (906)
T ss_pred -----ceee-eccCChHHHHHHHhh-CCCCceEEeehh
Confidence 0111 112233445555443 445668888988
No 183
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.013 Score=61.86 Aligned_cols=182 Identities=16% Similarity=0.121 Sum_probs=100.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---ccccCce-----EEEEeCCCCCHHHHHHHH
Q 040735 192 KDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRV---QRHFQIK-----SWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 192 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~F~~~-----~wv~~~~~~~~~~~~~~i 263 (779)
..-+++...+..+. -...+.+.|+.|+||+++|..+....-- ...-.|. .++.....+|...+
T Consensus 9 ~~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (334)
T PRK07993 9 PDYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL---- 79 (334)
T ss_pred HHHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE----
Confidence 34556666664432 2457789999999999999887542100 0000000 00111111111000
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHH----hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCc-hhhHhhh
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLKKQ----LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRN-QGVAETM 338 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~ 338 (779)
........-.+++..+..... ..+++-++|+|++...+......+...+-.-..++.+|++|.+ ..+..++
T Consensus 80 ----~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 80 ----TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL 155 (334)
T ss_pred ----ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 000000112233333222211 1356779999999776667777787777665566666666665 4455443
Q ss_pred -cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 339 -RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 339 -~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
.....+.+.+++.+++...+.... ..+ .+.+..++..++|.|.....+
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~~------~~~---~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSREV------TMS---QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHcc------CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 334678999999999988876532 111 133667889999999654333
No 184
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.22 E-value=0.0033 Score=60.08 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=35.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++||-++.++++.-.-.++ +.+-+.|.||+|+||||-+..+.+
T Consensus 27 ~dIVGNe~tv~rl~via~~g------nmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG------NMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCceEeeCCCCCchhhHHHHHHH
Confidence 46899999999887776443 457889999999999998877765
No 185
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.21 E-value=0.0044 Score=69.83 Aligned_cols=178 Identities=12% Similarity=0.140 Sum_probs=91.9
Q ss_pred CccccchhhHHHHHHHHh---cCC---CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHH
Q 040735 185 AEVYGREKDKEAIVELLL---RDD---SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFR 258 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~---~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 258 (779)
.+++|.+..++++.+++. ... ..+....+-+.++|++|+|||+||+.++... ... ++.++.. +
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~~----~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISGS----D 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccHH----H
Confidence 468898877766665443 110 0012234568899999999999999998732 222 2222211 1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC----------hhhhhh----hcccCC--CCCCC
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN----------YNSWRA----LSCPFG--AGAFG 322 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~----l~~~l~--~~~~g 322 (779)
+ ..... ......+...+.......+.+|+||++..-. ...+.. +...+. ....+
T Consensus 124 ~----~~~~~------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 124 F----VEMFV------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred H----HHHHh------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 1 11110 1112233334444445678999999994310 011111 111111 11234
Q ss_pred cEEEEEcCchhhH-hhh----cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCC
Q 040735 323 SKIVVTHRNQGVA-ETM----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL 388 (779)
Q Consensus 323 s~IivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~ 388 (779)
..||.||...... ..+ .-...+.++..+.++-.++|......... ... .....+++.+.|.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~----~~l~~la~~t~G~ 259 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APD----VDLKAVARRTPGF 259 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccc----hhHHHHHHhCCCC
Confidence 5566677654321 111 12356788888888888888776532211 111 1234677778774
No 186
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0059 Score=68.10 Aligned_cols=166 Identities=20% Similarity=0.206 Sum_probs=91.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 263 (779)
+.+.+|-++.+++|++.|.-..-...-.-.++.++|+||+|||+|++.++. .....| +-++++.-.|..++--.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGH- 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGH- 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhccc-
Confidence 456789999999999998633211223447999999999999999999997 555666 33455555444433110
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh----hhhhhhcccCCC-CC------------CCcE-E
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY----NSWRALSCPFGA-GA------------FGSK-I 325 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~----~~~~~l~~~l~~-~~------------~gs~-I 325 (779)
..+. -..=+..+.+.+++. +.+.-+++||.+.-... +.-..+..-|.+ .+ -=|. +
T Consensus 396 -----RRTY-IGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 396 -----RRTY-IGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred -----cccc-cccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 0111 111123344444333 55677899999832110 011111111111 00 0122 3
Q ss_pred EEEcCch-h-h-HhhhcccccccCCCCChHHHHHHHHHhh
Q 040735 326 VVTHRNQ-G-V-AETMRAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 326 ivTtR~~-~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
.|||-+. + + +.-+....++++.+-+.+|-.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4444332 2 1 1223345688888888888777666554
No 187
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.014 Score=62.46 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=89.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL 289 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 289 (779)
.+...+.+.|++|+|||+||..+.. ...|+.+--++- +++ ++.. +......+.....+..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSp------e~m-------iG~s---EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISP------EDM-------IGLS---ESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeCh------HHc-------cCcc---HHHHHHHHHHHHHHhh
Confidence 4577788999999999999998885 345664332221 111 0100 2222333444455555
Q ss_pred CCCeEEEEEeCCcCCChhhhhhhccc---------------CCCCCCCcEEEEEcCchhhHhhhcc----cccccCCCCC
Q 040735 290 SGKKFLVVLDDVWNENYNSWRALSCP---------------FGAGAFGSKIVVTHRNQGVAETMRA----VSTKTLKELS 350 (779)
Q Consensus 290 ~~k~~LlVlDdvw~~~~~~~~~l~~~---------------l~~~~~gs~IivTtR~~~v~~~~~~----~~~~~l~~L~ 350 (779)
+..--.||+||+ +...+|-.+... .|+.+..--|+-||....+...|+- ...|.++.++
T Consensus 596 kS~lsiivvDdi--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDI--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcch--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 677789999999 434455444332 2222233345667777888887763 3578888888
Q ss_pred h-HHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHc
Q 040735 351 D-DDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKC 385 (779)
Q Consensus 351 ~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c 385 (779)
. ++..+.++..-. -.+.+.+.++++...+|
T Consensus 674 ~~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccC-----CCcchhHHHHHHHhccc
Confidence 7 777777766421 12334455666666666
No 188
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.14 E-value=0.00018 Score=70.27 Aligned_cols=104 Identities=22% Similarity=0.227 Sum_probs=50.5
Q ss_pred CCCCccEEEecCCCCCccCccccCCCccceEecccc--ccc-ccccccccccccceeeccCCcchhh---chhhhcCccc
Q 040735 596 NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRT--NIQ-ILPESINSLYNLHTILLEDCRRLKK---LCKNMGNLMK 669 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n--~i~-~lp~~~~~L~~L~~L~l~~~~~~~~---lp~~~~~l~~ 669 (779)
.+..|..|++.+..++.+ ..+..|++|++|.++.| ++. .++....++++|++|++++| .+.. +++ +..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch-hhhhcc
Confidence 344444444544444433 23334556666666666 333 44444445566666666666 3332 111 345555
Q ss_pred cceeecCCCcccccCCcc----cCCCCCCcccCceeeC
Q 040735 670 LHHLRNPNVHSLEEMPKG----FGKLTCLLTLSRFVVG 703 (779)
Q Consensus 670 L~~L~l~~~~~~~~~p~~----~~~L~~L~~L~~~~~~ 703 (779)
|..|++.+|.. ..+-.. +.-|++|.+|+...+.
T Consensus 118 L~~Ldl~n~~~-~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLFNCSV-TNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcccCCc-cccccHHHHHHHHhhhhccccccccC
Confidence 66666666552 222211 3445566666554443
No 189
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.13 E-value=0.00088 Score=66.26 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=28.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEe
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCV 250 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 250 (779)
--++|+|..|+|||||+..+.. .....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3578999999999999999886 35667877766654
No 190
>PRK08118 topology modulation protein; Reviewed
Probab=97.13 E-value=0.00022 Score=67.48 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccc-cccCceEE
Q 040735 214 VISIKGLGGVGKTTLAQLVYQDDRVQ-RHFQIKSW 247 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 247 (779)
-|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999854433 34666665
No 191
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.12 E-value=0.0056 Score=66.48 Aligned_cols=226 Identities=15% Similarity=0.064 Sum_probs=120.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCe
Q 040735 214 VISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKK 293 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 293 (779)
++.|.|+-++||||+++.+... ..+. .+++...+......-+.+.+ ..+.+.-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~------------------~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLL------------------RAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHH------------------HHHHHhhccCC
Confidence 9999999999999999776652 1111 44444332211111111111 11111112277
Q ss_pred EEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhhHhh------hcccccccCCCCChHHHHHHHHHhhcCCCC
Q 040735 294 FLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGVAET------MRAVSTKTLKELSDDDCLRVLIQHSLGARD 367 (779)
Q Consensus 294 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~------~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 367 (779)
..|+||.|.. ...|......+.+.++. +|++|+-+...... .+....+.+.||+-.|...+....+
T Consensus 96 ~yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----- 167 (398)
T COG1373 96 SYIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----- 167 (398)
T ss_pred ceEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc-----
Confidence 8999999954 57888887777776655 88888887654321 1234678899999998876532000
Q ss_pred CCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhhhhcccccCCCCchHHHHHhhcCCChhhHhHhhh
Q 040735 368 FNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEFVLNANIWDLQEDKCDIVPALRVSYHFLPPQLKQCFAY 447 (779)
Q Consensus 368 ~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~ 447 (779)
....... .-.-.-..||.|.++..-...-+ ..+....++.......... .. +...+..+.+
T Consensus 168 --~~~~~~~-~f~~Yl~~GGfP~~v~~~~~~~~---~~~~~~~~~~~Di~~~~~~------------~~-~~~~k~i~~~ 228 (398)
T COG1373 168 --EPSKLEL-LFEKYLETGGFPESVKADLSEKK---LKEYLDTILKRDIIERGKI------------EN-ADLMKRILRF 228 (398)
T ss_pred --chhHHHH-HHHHHHHhCCCcHHHhCcchhhH---HHHHHHHHHHHHHHHHcCc------------cc-HHHHHHHHHH
Confidence 0001111 22223457899987654332111 1122222222221111110 00 1235555555
Q ss_pred hccCCCCCccCHHHHHHHHHHcCCccCCCCCCCHHHHHHHHHHHHhhCcccccc
Q 040735 448 FSLFPKDYDFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLVQQS 501 (779)
Q Consensus 448 ls~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~ 501 (779)
++... +..+....+.+.+- ....+....|++-|.+.-++...
T Consensus 229 l~~~~-g~~~s~~~la~~l~-----------~is~~Ti~~Yl~~le~~fll~~~ 270 (398)
T COG1373 229 LASNI-GSPISYSSLARELK-----------GISKDTIRKYLSYLEDAFLLFLV 270 (398)
T ss_pred HHhhc-CCccCHHHHHHHHh-----------ccchHHHHHHHHHHHHhhheEEe
Confidence 55443 33456666665542 01156778888888888777643
No 192
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.11 E-value=0.0022 Score=61.84 Aligned_cols=123 Identities=21% Similarity=0.257 Sum_probs=71.9
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 182 VNEAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
++-..++|-+...+.+++-...--. +....-|.+||.-|+|||+|++++.+ .+....-. -|.|...
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~-------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE-------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH--------
Confidence 4445789999998888775432211 11234678999999999999999987 33333322 2222111
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcC-CChhhhhhhcccCCCC---CCCcEEEEEcCch
Q 040735 262 LILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWN-ENYNSWRALSCPFGAG---AFGSKIVVTHRNQ 332 (779)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~---~~gs~IivTtR~~ 332 (779)
+..+...+.+.|+. ..+||+|..||+.- +....+..+...+..+ .+...++..|.++
T Consensus 123 ------------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ------------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ------------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11122222333322 46899999999943 3345666676666543 3444555555554
No 193
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.017 Score=60.93 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=64.3
Q ss_pred CCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCc-hhhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCC
Q 040735 291 GKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRN-QGVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDF 368 (779)
Q Consensus 291 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 368 (779)
++.-++|+|++...+...++.+...+-.-.+++.+|++|.+ ..+..++ .....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 45668999999887778888888877766666665555554 4454333 334688999999999998887641 1
Q ss_pred CCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 369 NIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 369 ~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
++ ...++..++|.|+.+..+.
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1235778899997655443
No 194
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.06 E-value=0.00056 Score=71.47 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=41.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+++|.++.++++++++.......+...+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999997654322345689999999999999999999874
No 195
>PRK08181 transposase; Validated
Probab=97.06 E-value=0.00071 Score=68.84 Aligned_cols=101 Identities=19% Similarity=0.078 Sum_probs=53.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
.-+.++|++|+|||.||..+.+. .......++|++ ..+++..+..... ....+..... +. +
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~------~~~L~~~l~~a~~------~~~~~~~l~~----l~-~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTR------TTDLVQKLQVARR------ELQLESAIAK----LD-K 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeee------HHHHHHHHHHHHh------CCcHHHHHHH----Hh-c
Confidence 35899999999999999999863 222223344543 2344444432211 1122222222 22 3
Q ss_pred eEEEEEeCCcCCChhhhh--hhcccCCCCCCCcEEEEEcCch
Q 040735 293 KFLVVLDDVWNENYNSWR--ALSCPFGAGAFGSKIVVTHRNQ 332 (779)
Q Consensus 293 ~~LlVlDdvw~~~~~~~~--~l~~~l~~~~~gs~IivTtR~~ 332 (779)
.-||||||+.......|. .+...+.....+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 459999999543333332 2233222211123588888764
No 196
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.04 E-value=0.0046 Score=73.03 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=68.4
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
..++|.+..++.+...+..... .......++.++|++|+|||+||+.+... . +...+.++.++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 3578999999988888764321 01123456889999999999999999862 2 22234444443222111
Q ss_pred HHHHHhhcCCC-CCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCC
Q 040735 262 LILNSIASDQC-TDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGA 318 (779)
Q Consensus 262 ~il~~l~~~~~-~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~ 318 (779)
+...++.+.. .+......+.+.++ ....-+++||++...+.+.++.+...+..
T Consensus 526 -~~~lig~~~gyvg~~~~~~l~~~~~---~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLLTEAVR---KHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -HHHHhcCCCCCcccchhhHHHHHHH---hCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111222211 01112222333332 13345999999987777777766665543
No 197
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.02 E-value=0.019 Score=61.06 Aligned_cols=209 Identities=13% Similarity=0.163 Sum_probs=119.7
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHH-HHHhcccccccccCceEEEEeCCCC---CHHHHHHHHHH
Q 040735 190 REKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLA-QLVYQDDRVQRHFQIKSWTCVFEDF---DVFRVSKLILN 265 (779)
Q Consensus 190 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~~~~~---~~~~~~~~il~ 265 (779)
|.+..++|..||..... ..|.|.||-|+||+.|+ .++..+.+. ++.++|.+-. +-...+..+..
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 56778999999976554 69999999999999999 777664322 3444443211 12222333333
Q ss_pred Hhh-----------------------cCCCCCcccH-HHHHHHH-------HH-------------------Hh---CCC
Q 040735 266 SIA-----------------------SDQCTDKDDL-NLLQEKL-------KK-------------------QL---SGK 292 (779)
Q Consensus 266 ~l~-----------------------~~~~~~~~~~-~~~~~~l-------~~-------------------~l---~~k 292 (779)
+++ +....-..+. .++...+ ++ +| ..+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 322 1111001111 1111111 11 11 123
Q ss_pred eEEEEEeCCcCCC---------hhhhhhhcccCCCCCCCcEEEEEcCchhhHhhhc------ccccccCCCCChHHHHHH
Q 040735 293 KFLVVLDDVWNEN---------YNSWRALSCPFGAGAFGSKIVVTHRNQGVAETMR------AVSTKTLKELSDDDCLRV 357 (779)
Q Consensus 293 ~~LlVlDdvw~~~---------~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~------~~~~~~l~~L~~~~~~~l 357 (779)
+-+||+|+.-... ..+|..... ..+=.+||+.|-+......+. ..+.+.|.-.+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 6699999984321 123443221 123457888888765443322 346788999999999999
Q ss_pred HHHhhcCCCCC------------CC----ChhHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhH-HHHHHhh
Q 040735 358 LIQHSLGARDF------------NI----PQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLND-WEFVLNA 414 (779)
Q Consensus 358 f~~~a~~~~~~------------~~----~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~-w~~~l~~ 414 (779)
...+.-..... .. ......-....++.+||--.-+..+++.++...++.+ -+.+.++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 88876432110 00 0123344566788999999999999999998865543 3344433
No 198
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.00 E-value=0.0025 Score=66.40 Aligned_cols=123 Identities=16% Similarity=0.134 Sum_probs=69.8
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhh
Q 040735 189 GREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIA 268 (779)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 268 (779)
++........+++..-.. ....+-+.|+|..|+|||.||.++++... ..=..+.++++ .+++..+-....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEH------HHHHHHHHHHHh
Confidence 455555555666653321 12346789999999999999999998432 22223445544 244444444432
Q ss_pred cCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhh--hcccC-CCC-CCCcEEEEEcCch
Q 040735 269 SDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRA--LSCPF-GAG-AFGSKIVVTHRNQ 332 (779)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~--l~~~l-~~~-~~gs~IivTtR~~ 332 (779)
.. .... .+.. +. +-=||||||+..+....|.. +...+ ... ..+-.+|+||.-.
T Consensus 205 ~~------~~~~---~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 205 DG------SVKE---KIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred cC------cHHH---HHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 11 1222 2222 22 45689999997766667753 44433 221 2355688888743
No 199
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.00 E-value=0.00062 Score=65.01 Aligned_cols=101 Identities=19% Similarity=0.271 Sum_probs=49.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
.-+.++|.+|+|||.||..+.+..- ...+ .+.|+.. .+ ++..+.... .....+..... +. +
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~-~~g~-~v~f~~~------~~----L~~~l~~~~--~~~~~~~~~~~----l~-~ 108 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAI-RKGY-SVLFITA------SD----LLDELKQSR--SDGSYEELLKR----LK-R 108 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEEH------HH----HHHHHHCCH--CCTTHCHHHHH----HH-T
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhc-cCCc-ceeEeec------Cc----eeccccccc--cccchhhhcCc----cc-c
Confidence 5689999999999999999987321 2222 3455543 33 333333321 11122222222 22 2
Q ss_pred eEEEEEeCCcCCChhhhhh--hcccCCCCCCCcEEEEEcCch
Q 040735 293 KFLVVLDDVWNENYNSWRA--LSCPFGAGAFGSKIVVTHRNQ 332 (779)
Q Consensus 293 ~~LlVlDdvw~~~~~~~~~--l~~~l~~~~~gs~IivTtR~~ 332 (779)
-=||||||+.......|.. +...+........+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 3588899997654445433 111111111122588888754
No 200
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.99 E-value=0.0014 Score=71.17 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=36.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++||++.++.+...+..+. -|.|.|++|+|||++|+.+..
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHH
Confidence 47899999999999887654 588999999999999999986
No 201
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.97 E-value=0.0018 Score=77.05 Aligned_cols=138 Identities=20% Similarity=0.162 Sum_probs=74.3
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
..++|.+..++.+.+.+..... .......++.++|++|+|||.||+.+... +-......+-++++.-.+. .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----h
Confidence 4689999999999998864311 12234567899999999999999988652 1111111122222211111 0
Q ss_pred HHHHHhhcCCCC-CcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCC-----------CCcEEEEEc
Q 040735 262 LILNSIASDQCT-DKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGA-----------FGSKIVVTH 329 (779)
Q Consensus 262 ~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTt 329 (779)
.+..-++.+..- +......+.+.+++ ...-+|+||++...+...++.+...+..+. ..+-||+||
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Confidence 111111221110 11111223333332 455699999997666666666655554332 345577777
Q ss_pred Cc
Q 040735 330 RN 331 (779)
Q Consensus 330 R~ 331 (779)
..
T Consensus 717 Nl 718 (852)
T TIGR03345 717 NA 718 (852)
T ss_pred CC
Confidence 64
No 202
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.95 E-value=0.00019 Score=72.63 Aligned_cols=177 Identities=15% Similarity=0.114 Sum_probs=82.3
Q ss_pred CCCCccEEEecCCCCC-c-cC---ccccCCCccceEecccccccccc--------------cccccccccceeeccCCcc
Q 040735 596 NLPRLRVFSLHGYHIS-K-LP---NEIGNLKHLRFLNLSRTNIQILP--------------ESINSLYNLHTILLEDCRR 656 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~-~-lp---~~~~~l~~L~~L~l~~n~i~~lp--------------~~~~~L~~L~~L~l~~~~~ 656 (779)
..+.|++||||.|-+. . ++ .-+.++..|+.|.|.+|.+...- .-+.+-++|+++....| .
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-r 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-R 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-c
Confidence 5556666666666554 1 11 22445566666666666554211 11233345666666665 3
Q ss_pred hhhch-----hhhcCccccceeecCCCccccc----CCcccCCCCCCcccCceeeCCCCC---CCchhhhccccccceeE
Q 040735 657 LKKLC-----KNMGNLMKLHHLRNPNVHSLEE----MPKGFGKLTCLLTLSRFVVGKDSG---SGLRELKSLMHLQGTLQ 724 (779)
Q Consensus 657 ~~~lp-----~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~L~~L~~L~~~~~~~~~~---~~~~~L~~L~~L~~~L~ 724 (779)
+..-+ ..+...+.|+.+.+..|..-.. +-..+..+++|+.|++..+..... ..-..|+.+++|+ .|+
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~-El~ 247 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR-ELN 247 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe-eec
Confidence 33222 2344445666666665541100 112245566666665544332211 0112244444454 444
Q ss_pred EcccCC----CCCcchhhhccCCCCCCCchHHH---------HhccCCCCCCCCeEEEeecCC
Q 040735 725 ISKLEN----VKDVGDASEAQLNTKPDFKIEIR---------VLDMLKPHQKLEELTIAGYGG 774 (779)
Q Consensus 725 i~~~~~----~~~~~~~~~~~L~~l~~L~~~~~---------~l~~l~~~~~L~~L~l~~~~~ 774 (779)
++++.- ...+..+.....++|+.|....+ ....+...+.|.+|+|++|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 444311 11222333344555555521111 111223367899999999876
No 203
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.93 E-value=0.00027 Score=71.55 Aligned_cols=204 Identities=18% Similarity=0.171 Sum_probs=119.4
Q ss_pred cccccccceEecccCcccccccccchH----hhhhhcCCCCccEEEecCCCC----CccCc-------cccCCCccceEe
Q 040735 563 SVSDVERLRTFLPVNLSDYRRNYLAWS----VLQRLLNLPRLRVFSLHGYHI----SKLPN-------EIGNLKHLRFLN 627 (779)
Q Consensus 563 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~n~l----~~lp~-------~~~~l~~L~~L~ 627 (779)
.+..+..+..+.++++. +... +-+.+.+.+.|+.-++++--. ..+|+ .+-..++|++||
T Consensus 25 ~~~~~~s~~~l~lsgnt------~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNT------FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred HhcccCceEEEeccCCc------hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 34455666677666654 3222 222333667788888876521 13443 344567899999
Q ss_pred ccccccc-cccc----ccccccccceeeccCCcchhhchh--------------hhcCccccceeecCCCcccccCCc--
Q 040735 628 LSRTNIQ-ILPE----SINSLYNLHTILLEDCRRLKKLCK--------------NMGNLMKLHHLRNPNVHSLEEMPK-- 686 (779)
Q Consensus 628 l~~n~i~-~lp~----~~~~L~~L~~L~l~~~~~~~~lp~--------------~~~~l~~L~~L~l~~~~~~~~~p~-- 686 (779)
||+|-+. .-++ -+.+++.|+.|.|.+| .++..-. -+..-++|+.+...+|. +..-+.
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~ 176 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATA 176 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHH
Confidence 9999876 3333 3567889999999999 5432211 13445789999988888 555442
Q ss_pred ---ccCCCCCCcccCceeeCCCCCC---CchhhhccccccceeEEcccCCCCCcchh---hhccCCCCCCCchH------
Q 040735 687 ---GFGKLTCLLTLSRFVVGKDSGS---GLRELKSLMHLQGTLQISKLENVKDVGDA---SEAQLNTKPDFKIE------ 751 (779)
Q Consensus 687 ---~~~~L~~L~~L~~~~~~~~~~~---~~~~L~~L~~L~~~L~i~~~~~~~~~~~~---~~~~L~~l~~L~~~------ 751 (779)
.+...+.|+.+.+..++..... ....+..+++|+ .|++.++........+ .+..++.|+.|+..
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Le-vLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLE-VLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcce-eeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 2555667777765554443322 234577788888 8888765332211111 23444444444221
Q ss_pred ---HHHhccCC-CCCCCCeEEEeecCCC
Q 040735 752 ---IRVLDMLK-PHQKLEELTIAGYGGT 775 (779)
Q Consensus 752 ---~~~l~~l~-~~~~L~~L~l~~~~~~ 775 (779)
..+.+.+. ..|+|+.|.+.+|.++
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhH
Confidence 12233332 2678999999888654
No 204
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.92 E-value=0.0042 Score=62.19 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=34.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRV 259 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 259 (779)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4579999999999999999998763 22334567898887 5555443
No 205
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.88 E-value=0.0071 Score=72.31 Aligned_cols=137 Identities=15% Similarity=0.123 Sum_probs=73.4
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
..++|.+..++.+...+..... ..+....++.++|++|+|||++|+.+.+.. ...-...+.+.++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-h----
Confidence 3588999999998888864321 011223578899999999999999988621 11111223333332111 1
Q ss_pred HHHHHhhcCCCC-CcccHHHHHHHHHHHhCC-CeEEEEEeCCcCCChhhhhhhcccCCCC----C-------CCcEEEEE
Q 040735 262 LILNSIASDQCT-DKDDLNLLQEKLKKQLSG-KKFLVVLDDVWNENYNSWRALSCPFGAG----A-------FGSKIVVT 328 (779)
Q Consensus 262 ~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw~~~~~~~~~l~~~l~~~----~-------~gs~IivT 328 (779)
.....+.+.... ...+.. ..+.+.++. ..-+|+||++...+...+..+...+..+ + ..+-||+|
T Consensus 641 ~~~~~LiG~~pgy~g~~~~---g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred hhHHHHhCCCCcccccchh---HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 111222221110 111111 112233322 3359999999766767777666555332 1 12337778
Q ss_pred cCc
Q 040735 329 HRN 331 (779)
Q Consensus 329 tR~ 331 (779)
|..
T Consensus 718 SN~ 720 (857)
T PRK10865 718 SNL 720 (857)
T ss_pred CCc
Confidence 875
No 206
>PRK09183 transposase/IS protein; Provisional
Probab=96.87 E-value=0.0027 Score=64.66 Aligned_cols=22 Identities=41% Similarity=0.422 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+.|+|++|+|||+||..+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4677999999999999999875
No 207
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.00011 Score=71.85 Aligned_cols=78 Identities=28% Similarity=0.354 Sum_probs=51.0
Q ss_pred CCCCccEEEecCCCCCccCccccCCCccceEeccccccccccc--ccccccccceeeccCCcchhhchhh-----hcCcc
Q 040735 596 NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPE--SINSLYNLHTILLEDCRRLKKLCKN-----MGNLM 668 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~--~~~~L~~L~~L~l~~~~~~~~lp~~-----~~~l~ 668 (779)
+++.|.+|.|+-|.|+.+ ..+..++.|+.|+|+.|.|..+-+ -+.+|++|++|.|..|.-.+.-+.. +.-|+
T Consensus 39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 777777777777777776 346677777777777777776533 3456777777777776444443332 34566
Q ss_pred ccceee
Q 040735 669 KLHHLR 674 (779)
Q Consensus 669 ~L~~L~ 674 (779)
+|+.||
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 666665
No 208
>PRK06526 transposase; Provisional
Probab=96.80 E-value=0.0018 Score=65.57 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.-+.|+|++|+|||+||..+...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 46899999999999999998763
No 209
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.80 E-value=0.0059 Score=64.25 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=61.5
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccc-Cc-eEEEEeCCC-CCHHHHHHHHHHHhhc
Q 040735 193 DKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHF-QI-KSWTCVFED-FDVFRVSKLILNSIAS 269 (779)
Q Consensus 193 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~~~~~-~~~~~~~~~il~~l~~ 269 (779)
-..++++.+..-.. -.-+.|+|.+|+|||||++.+.+. +.... +. .+|+.+.+. .++.++.+.+...+..
T Consensus 119 ~~~RvID~l~PiGk-----GQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIGK-----GQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecCC-----CceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 33457777764321 134589999999999999998873 22222 33 367666654 4677788888776665
Q ss_pred CCCCCccc----HHHHHHHHHHHh--CCCeEEEEEeCC
Q 040735 270 DQCTDKDD----LNLLQEKLKKQL--SGKKFLVVLDDV 301 (779)
Q Consensus 270 ~~~~~~~~----~~~~~~~l~~~l--~~k~~LlVlDdv 301 (779)
........ .......+.+++ .+++++||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 43211111 111111222222 589999999999
No 210
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.79 E-value=0.0047 Score=62.34 Aligned_cols=90 Identities=23% Similarity=0.166 Sum_probs=53.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccc----cCceEEEEeCCCCCHHHHHHHHHHHhhcCCC-----------CCc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRH----FQIKSWTCVFEDFDVFRVSKLILNSIASDQC-----------TDK 275 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----------~~~ 275 (779)
.-.++.|+|++|+|||+||.+++........ -..++|++....++...+ .++++..+.... ...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 4579999999999999999998743222221 357899998887775444 333333322110 011
Q ss_pred ccHHHHHHHHHHHh-CC-CeEEEEEeCC
Q 040735 276 DDLNLLQEKLKKQL-SG-KKFLVVLDDV 301 (779)
Q Consensus 276 ~~~~~~~~~l~~~l-~~-k~~LlVlDdv 301 (779)
.+.......+...+ +. +.-+||+|.+
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 12223334444444 23 5668888887
No 211
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.79 E-value=0.0054 Score=61.47 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=55.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSG 291 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 291 (779)
...+.++|.+|+|||+||..+++... ..-..+++++ ..++...+-.... . .....+. +.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~-~---~~~~~~~----~l~~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFS-N---SETSEEQ----LLNDLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHh-h---ccccHHH----HHHHhc-
Confidence 35788999999999999999988432 2223344553 3334433333221 1 1112222 223344
Q ss_pred CeEEEEEeCCcCCChhhhhh--hcccCCCC-CCCcEEEEEcCch
Q 040735 292 KKFLVVLDDVWNENYNSWRA--LSCPFGAG-AFGSKIVVTHRNQ 332 (779)
Q Consensus 292 k~~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~IivTtR~~ 332 (779)
+.=+||+||+.......|.. +...+... ...-.+||||...
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 34488899997655555653 22222111 1234578888643
No 212
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.79 E-value=0.0063 Score=73.00 Aligned_cols=138 Identities=18% Similarity=0.203 Sum_probs=76.0
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
..++|.+..++.+...+..... .......++.++|++|+|||++|+.+... ....-...+.++.+.-.+...+ .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-A 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH-H
Confidence 4589999999999999875321 01123467889999999999999998862 1111112233343332221111 1
Q ss_pred HHHHHhhcCCC-CCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCC-----------CCcEEEEEc
Q 040735 262 LILNSIASDQC-TDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGA-----------FGSKIVVTH 329 (779)
Q Consensus 262 ~il~~l~~~~~-~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTt 329 (779)
. -++.+.. .+......+...++. ....+|+||++...+...+..+...+..+. ..+-||+||
T Consensus 642 ~---l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 642 R---LIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred H---hcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 1 1122111 011112223333322 233499999998777777777766654331 233477777
Q ss_pred Cc
Q 040735 330 RN 331 (779)
Q Consensus 330 R~ 331 (779)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 64
No 213
>PRK06921 hypothetical protein; Provisional
Probab=96.78 E-value=0.0042 Score=63.48 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=27.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccc-cCceEEEEe
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRH-FQIKSWTCV 250 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~ 250 (779)
...+.++|.+|+|||+||.++++. +... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 467899999999999999999884 3332 234556653
No 214
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.015 Score=58.53 Aligned_cols=79 Identities=16% Similarity=0.261 Sum_probs=48.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccc--cccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDR--VQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL 289 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 289 (779)
-|+|.++||||.|||+|.+++++... ..+.|....-+.+... .+....... ...-+..+-+.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsE---SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSE---SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhh---hhhHHHHHHHHHHHHH
Confidence 48899999999999999999998753 3455655554444321 122222211 2334455556666666
Q ss_pred CCCe--EEEEEeCC
Q 040735 290 SGKK--FLVVLDDV 301 (779)
Q Consensus 290 ~~k~--~LlVlDdv 301 (779)
.++. +.+.+|.|
T Consensus 246 ~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEV 259 (423)
T ss_pred hCCCcEEEEEeHHH
Confidence 6554 34557888
No 215
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.0046 Score=67.99 Aligned_cols=190 Identities=18% Similarity=0.157 Sum_probs=107.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
+++||-+.-...|...+.... -.......|+-|+||||+|+.+....-... | ....++.....-+.|-
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 357999999999999886543 123455789999999999988764211110 0 0111111111111221
Q ss_pred HH-------hhcCCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEE-EcCchhhH
Q 040735 265 NS-------IASDQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVV-THRNQGVA 335 (779)
Q Consensus 265 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~v~ 335 (779)
.. +........++++++.+.+.-. ..++.=+.|+|.|.-.+...|..+...+-.-......|. ||....+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11 0111111233333333333211 134555999999977777888888877765544555555 55444444
Q ss_pred hh-hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChH
Q 040735 336 ET-MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL 390 (779)
Q Consensus 336 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PL 390 (779)
.. ......|.+..++.++-...+...+-..... ...+...-|++..+|..-
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~----~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN----IEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCc----cCHHHHHHHHHHcCCChh
Confidence 33 3345789999999998888887765433221 122445556666666543
No 216
>PRK12377 putative replication protein; Provisional
Probab=96.75 E-value=0.0046 Score=62.16 Aligned_cols=102 Identities=18% Similarity=0.084 Sum_probs=55.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
..+.++|.+|+|||+||.++++. .......++++++. +++..+-..... ....... + +.+ .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~-----~~~~~~~---l-~~l-~~ 163 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN-----GQSGEKF---L-QEL-CK 163 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc-----cchHHHH---H-HHh-cC
Confidence 57899999999999999999984 33333344565542 334433333211 1111122 2 222 34
Q ss_pred eEEEEEeCCcCCChhhhhh--hcccCCCC-CCCcEEEEEcCch
Q 040735 293 KFLVVLDDVWNENYNSWRA--LSCPFGAG-AFGSKIVVTHRNQ 332 (779)
Q Consensus 293 ~~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~IivTtR~~ 332 (779)
--||||||+.......|.. +...+... ...-.+||||...
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 5699999995543344543 22222221 1223478887643
No 217
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.74 E-value=0.00053 Score=62.86 Aligned_cols=85 Identities=20% Similarity=0.071 Sum_probs=45.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeE
Q 040735 215 ISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKF 294 (779)
Q Consensus 215 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 294 (779)
|.++|++|+|||+||+.++.. ... ...-+.++...+..++....--. ..........+...++ +..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~----~~~~~~~~~~l~~a~~-----~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPS----NGQFEFKDGPLVRAMR-----KGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET-----TTTTCEEE-CCCTTHH-----EEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeec----cccccccccccccccc-----cee
Confidence 679999999999999999862 211 12335666767766654322111 0001111111111111 789
Q ss_pred EEEEeCCcCCChhhhhhhc
Q 040735 295 LVVLDDVWNENYNSWRALS 313 (779)
Q Consensus 295 LlVlDdvw~~~~~~~~~l~ 313 (779)
++|||++.......+..+.
T Consensus 68 il~lDEin~a~~~v~~~L~ 86 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLL 86 (139)
T ss_dssp EEEESSCGG--HHHHHTTH
T ss_pred EEEECCcccCCHHHHHHHH
Confidence 9999999654444444443
No 218
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.023 Score=62.18 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=63.8
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSR------ADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFR 258 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 258 (779)
.++=|.++.+.++.+++.....+ +-..++=|.++|++|+|||.||+++.++ ..-.| +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch-----
Confidence 45778898888888877642211 2234577889999999999999999984 33233 333322
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCc
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVW 302 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw 302 (779)
+|+..+ .....+.+.+...+.-..-++++++|++.
T Consensus 258 ---eivSGv------SGESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ---EIVSGV------SGESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ---hhhccc------CcccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 222222 23344555555566667789999999994
No 219
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.71 E-value=0.0059 Score=60.36 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=36.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
..-.++.|+|++|+|||+++.++... ....-..++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 34589999999999999999988763 223346788998876 66555443
No 220
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.67 E-value=0.0018 Score=68.07 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=53.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
..+.++|.+|+|||+||..+++.. ...-..++++++. +++..+...-. . ...+.... + +.+. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~------~l~~~l~~~~~-~---~~~~~~~~---~-~~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTAD------ELIEILREIRF-N---NDKELEEV---Y-DLLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHH------HHHHHHHHHHh-c---cchhHHHH---H-HHhc-c
Confidence 569999999999999999998843 2222244555432 23322222111 1 11111111 2 2222 2
Q ss_pred eEEEEEeCCcCCChhhhhh--hcccCCCC-CCCcEEEEEcCch
Q 040735 293 KFLVVLDDVWNENYNSWRA--LSCPFGAG-AFGSKIVVTHRNQ 332 (779)
Q Consensus 293 ~~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~IivTtR~~ 332 (779)
-=||||||+.......|.. +...+... ..+-.+||||...
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 2489999996554344432 22222221 1245688888753
No 221
>PRK07261 topology modulation protein; Provisional
Probab=96.67 E-value=0.0045 Score=58.79 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=39.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccc-cccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 214 VISIKGLGGVGKTTLAQLVYQDDRVQ-RHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
-|.|+|++|+||||||+.+.....+. -+.+...|-... ...+.++....+.+.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 59 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW----------------------QERDDDDMIADISNFLLKH 59 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc----------------------ccCCHHHHHHHHHHHHhCC
Confidence 47899999999999999987632211 123444442110 1223445556666666666
Q ss_pred eEEEEEeCCc
Q 040735 293 KFLVVLDDVW 302 (779)
Q Consensus 293 ~~LlVlDdvw 302 (779)
+ .|+|+..
T Consensus 60 ~--wIidg~~ 67 (171)
T PRK07261 60 D--WIIDGNY 67 (171)
T ss_pred C--EEEcCcc
Confidence 6 6788874
No 222
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0038 Score=71.47 Aligned_cols=134 Identities=19% Similarity=0.265 Sum_probs=78.8
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccc---CceEEEEeCCCCCHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHF---QIKSWTCVFEDFDVFR 258 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~~~~~~ 258 (779)
..++|.+..++.+.+.+..... .......+...+|+.|||||.||+.+... -| +..+-++.|+--..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~Ek-- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYMEK-- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHHH--
Confidence 4689999999999998865432 12344567788999999999999988751 23 22233332222111
Q ss_pred HHHHHHHHhhcCCCC-CcccHHHHHHHHHHHhCCCeE-EEEEeCCcCCChhhhhhhcccCCCCC----C-------CcEE
Q 040735 259 VSKLILNSIASDQCT-DKDDLNLLQEKLKKQLSGKKF-LVVLDDVWNENYNSWRALSCPFGAGA----F-------GSKI 325 (779)
Q Consensus 259 ~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~~----~-------gs~I 325 (779)
..+-+-++.+..- +-..-. .|-+..+.++| +|.||.+.-.+++-.+-+...|..+. . .+-|
T Consensus 564 --HsVSrLIGaPPGYVGyeeGG----~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiI 637 (786)
T COG0542 564 --HSVSRLIGAPPGYVGYEEGG----QLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTII 637 (786)
T ss_pred --HHHHHHhCCCCCCceecccc----chhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEE
Confidence 1112222332211 111222 33444566777 88899998777777777776665431 2 3446
Q ss_pred EEEcCc
Q 040735 326 VVTHRN 331 (779)
Q Consensus 326 ivTtR~ 331 (779)
|+||..
T Consensus 638 ImTSN~ 643 (786)
T COG0542 638 IMTSNA 643 (786)
T ss_pred EEeccc
Confidence 777754
No 223
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.65 E-value=0.011 Score=62.77 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=81.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc-------------------ccCceE
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQR-------------------HFQIKS 246 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 246 (779)
.++|-+....++..+...... ....+.++|++|+||||+|..+.+..--.. .++...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 356777788888888864331 223589999999999999998876321110 112333
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCc
Q 040735 247 WTCVFEDFD---VFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGS 323 (779)
Q Consensus 247 wv~~~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 323 (779)
.+.-+.... ..+..+.+.+....... .++.-++++|++...+.+.-..+...+-.....+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 333333332 12222333222221110 3567899999996655555566666665555677
Q ss_pred EEEEEcCch-hhHhhhc-ccccccCCCC
Q 040735 324 KIVVTHRNQ-GVAETMR-AVSTKTLKEL 349 (779)
Q Consensus 324 ~IivTtR~~-~v~~~~~-~~~~~~l~~L 349 (779)
.+|++|... .+...+. ....+.+.+.
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCc
Confidence 888888743 3333222 2245566653
No 224
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.64 E-value=0.097 Score=58.54 Aligned_cols=203 Identities=16% Similarity=0.115 Sum_probs=112.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc---cc---cccCceEEEEeCCCCCHHHH
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDR---VQ---RHFQIKSWTCVFEDFDVFRV 259 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~---~~F~~~~wv~~~~~~~~~~~ 259 (779)
.+-+|+.+..+|.+.+...-.. .+.-+.+-|.|.+|+|||+.+..|.+... -+ ..|+ .+.++...-..+.++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 4668999999999988754331 23345899999999999999999987422 11 2232 344555566678999
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhC-----CCeEEEEEeCCcCCChhhhhhhcccCCC-CCCCcEEEEEcCch-
Q 040735 260 SKLILNSIASDQCTDKDDLNLLQEKLKKQLS-----GKKFLVVLDDVWNENYNSWRALSCPFGA-GAFGSKIVVTHRNQ- 332 (779)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~IivTtR~~- 332 (779)
...|..++.+... ......+.+..+.. .++.++++|++..--...-+-+-..|.+ ..++|+++|-+=..
T Consensus 475 Y~~I~~~lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 475 YEKIWEALSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHhcccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 9999999987543 23334444444443 4568888888722100011122333333 34577766654321
Q ss_pred -hhHhh-hc-------ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 333 -GVAET-MR-------AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 333 -~v~~~-~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
.+... +. ....+...|-+.++-.++...+..+.. .-.+...+-+++.++.-.|-.-.|+.+.
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 11110 00 113455566666666666555443321 1222334444444444444444444433
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.013 Score=61.80 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=48.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC--HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD--VFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQ 288 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 288 (779)
+.++|+|+|++|+||||++..++.... ...+ .+..++. +.+. ..+-++...+.++.+.. ...+...+.+.+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~a-Dt~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~l 315 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITT-DHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYF 315 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEec-CCcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHHH
Confidence 458999999999999999999876322 1112 2333443 2222 22233333334443322 234555565555444
Q ss_pred hCC-CeEEEEEeCCcC
Q 040735 289 LSG-KKFLVVLDDVWN 303 (779)
Q Consensus 289 l~~-k~~LlVlDdvw~ 303 (779)
-.. +.=++++|-...
T Consensus 316 k~~~~~DvVLIDTaGR 331 (436)
T PRK11889 316 KEEARVDYILIDTAGK 331 (436)
T ss_pred HhccCCCEEEEeCccc
Confidence 221 234777887744
No 226
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.63 E-value=0.035 Score=58.45 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=44.2
Q ss_pred CCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch-hhHhhhc-ccccccCCCCChHHHHHHHHHh
Q 040735 291 GKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ-GVAETMR-AVSTKTLKELSDDDCLRVLIQH 361 (779)
Q Consensus 291 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 361 (779)
+++-++|+|++..-+...-..+...+.....++.+|++|.+. .+...+. ....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344456678886655555555555554433455566666654 3443322 3467889999999998888653
No 227
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.60 E-value=0.0068 Score=72.55 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=74.8
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
..++|.+..++.+...+..... ..+....++.++|+.|+|||+||+.+... +-..-...+-++.+.-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHH-
Confidence 4689999999999888863221 11223456778999999999999988752 11111122333333222211111
Q ss_pred HHHHHhhcCC-CCCcccHHHHHHHHHHHhCCCe-EEEEEeCCcCCChhhhhhhcccCCCC-----------CCCcEEEEE
Q 040735 262 LILNSIASDQ-CTDKDDLNLLQEKLKKQLSGKK-FLVVLDDVWNENYNSWRALSCPFGAG-----------AFGSKIVVT 328 (779)
Q Consensus 262 ~il~~l~~~~-~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivT 328 (779)
.-++.+. ..+......+ .+.++.++ .+++||++...+...++.+...+..+ -..+-||+|
T Consensus 586 ---~l~g~~~gyvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 586 ---KLIGSPPGYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred ---HhcCCCCcccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 1112111 1011122223 33344444 58999999777777777766665543 124556777
Q ss_pred cCch
Q 040735 329 HRNQ 332 (779)
Q Consensus 329 tR~~ 332 (779)
|...
T Consensus 659 sn~g 662 (821)
T CHL00095 659 SNLG 662 (821)
T ss_pred CCcc
Confidence 7643
No 228
>PRK04296 thymidine kinase; Provisional
Probab=96.59 E-value=0.0035 Score=60.72 Aligned_cols=114 Identities=11% Similarity=-0.035 Sum_probs=61.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC-CcccHHHHHHHHHHHhCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCT-DKDDLNLLQEKLKKQLSG 291 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~ 291 (779)
.++.|+|+.|.||||+|..+... ...+-..++.+. ..++.......++.+++..... .....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999887763 222222233331 1112222233344555432210 12234455555554 334
Q ss_pred CeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchh
Q 040735 292 KKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQG 333 (779)
Q Consensus 292 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 333 (779)
+.-+||+|.+.--+.++..++...+. ..|..||+|.++..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 55699999994432222333333222 34778999998754
No 229
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.57 E-value=0.067 Score=56.92 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=31.9
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 040735 192 KDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDD 236 (779)
Q Consensus 192 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 236 (779)
.-.+.|.+.+...+. ....+|+|.|.=|+|||++.+.+....
T Consensus 3 ~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 3 PYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred HHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345567777765431 467899999999999999999987743
No 230
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.0006 Score=67.44 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=26.8
Q ss_pred CCCCccEEEecCCCCCccCccc-cCCCccceEeccccccc--ccccccccccccceeeccCC
Q 040735 596 NLPRLRVFSLHGYHISKLPNEI-GNLKHLRFLNLSRTNIQ--ILPESINSLYNLHTILLEDC 654 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp~~~-~~l~~L~~L~l~~n~i~--~lp~~~~~L~~L~~L~l~~~ 654 (779)
++|.|++|+|+.|.+..--++. -.+++|++|-|.++.+. ..-..+..++.++.|.++.|
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 5555555555555444211112 23445555555554433 33333444555555555544
No 231
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.53 E-value=0.0017 Score=57.74 Aligned_cols=21 Identities=48% Similarity=0.607 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+|+|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 232
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.00026 Score=69.29 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=80.8
Q ss_pred CCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchh--hhcCcccccee
Q 040735 596 NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCK--NMGNLMKLHHL 673 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L 673 (779)
.+.+.+.|++.||.+++| .-+.+|+.|++|.|+-|+|+.|- .+..+++|+.|.|+.| .+..+.+ -+.+|++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 355678889999999887 34567999999999999999983 4789999999999998 6766654 36899999999
Q ss_pred ecCCCcccccCCcc-----cCCCCCCcccCce
Q 040735 674 RNPNVHSLEEMPKG-----FGKLTCLLTLSRF 700 (779)
Q Consensus 674 ~l~~~~~~~~~p~~-----~~~L~~L~~L~~~ 700 (779)
-|..|+-.+.-+.. +.-|++|+.|+..
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 99988855555543 5667888888643
No 233
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.04 Score=56.65 Aligned_cols=178 Identities=13% Similarity=0.119 Sum_probs=97.3
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDS-------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVF 257 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 257 (779)
.++=|-++.+++|.+...-+-. -+-..++=|.++|++|.|||-||++|++ +....| +.+...
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH----
Confidence 3456788888888887643211 0234567789999999999999999998 344444 333221
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC-CCeEEEEEeCCcC-------C----C---hhhhhhhcccCCCC--C
Q 040735 258 RVSKLILNSIASDQCTDKDDLNLLQEKLKKQLS-GKKFLVVLDDVWN-------E----N---YNSWRALSCPFGAG--A 320 (779)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~-------~----~---~~~~~~l~~~l~~~--~ 320 (779)
++.+..-+. -..++..+.+.-+ ..+.+|++|.+.. . + +-..-++...+..+ .
T Consensus 220 ----ElVqKYiGE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 ----ELVQKYIGE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ----HHHHHHhcc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 222222111 1234444444443 5689999999832 0 0 01122233333222 2
Q ss_pred CCcEEEEEcCchhhHhhh--c---ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh
Q 040735 321 FGSKIVVTHRNQGVAETM--R---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 389 (779)
Q Consensus 321 ~gs~IivTtR~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P 389 (779)
...|||..|...+..... . -+..++++.-+.+.-.++|.-++..-.. ...-+ .+.|++.|.|.-
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-ADDVD----LELLARLTEGFS 357 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-ccCcC----HHHHHHhcCCCc
Confidence 357899988766544321 1 2356777755555556677666532221 11122 344566666664
No 234
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.50 E-value=0.012 Score=65.32 Aligned_cols=181 Identities=12% Similarity=0.026 Sum_probs=88.4
Q ss_pred CccccchhhHHHHHHHHhcC----CCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRD----DSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVS 260 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~----~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 260 (779)
.++.|.+..++.+......- ..-+-..++-|.++|++|+|||.+|+.+.+.. ...| +-+..+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhHH--------
Confidence 35777776666555432110 00011345678999999999999999998732 2222 1111111
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh--h------hh----hhhcccCCCCCCCcEEEEE
Q 040735 261 KLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY--N------SW----RALSCPFGAGAFGSKIVVT 328 (779)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--~------~~----~~l~~~l~~~~~gs~IivT 328 (779)
+.. .. .......+.+.+...-...+++|++|++..-.. . .- ..+...+.....+.-||.|
T Consensus 295 --l~~----~~--vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 --LFG----GI--VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred --hcc----cc--cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 110 00 111122223333322245789999999942100 0 00 0111112222334456667
Q ss_pred cCchhh-Hhhh----cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh
Q 040735 329 HRNQGV-AETM----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 389 (779)
Q Consensus 329 tR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P 389 (779)
|..... -..+ .-+..+.++.-+.++-.++|..+.......... ......+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~---~~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK---KYDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc---ccCHHHHHhhcCCCC
Confidence 765432 1111 123567788888888888888765332110000 112345666666654
No 235
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.0027 Score=62.95 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=17.7
Q ss_pred CCCccEEEecCCCCC--ccCccccCCCccceEeccccc
Q 040735 597 LPRLRVFSLHGYHIS--KLPNEIGNLKHLRFLNLSRTN 632 (779)
Q Consensus 597 l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~n~ 632 (779)
+.+|++|-|.|..+. ..-..+..++.++.|.++.|+
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 445566666555544 222334445555555555543
No 236
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.48 E-value=0.019 Score=56.06 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=83.6
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 185 AEVYGREKDKE---AIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 185 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
.+++|.+..+. -|.+.|..+..=++--++-|..+|++|.|||.+|+++.+... ..| +.+. ...
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~-----l~vk-------at~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPL-----LLVK-------ATE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cce-----EEec-------hHH
Confidence 46889876654 456666544322334578899999999999999999998433 222 1111 111
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC------------hhhhhhhcccCC--CCCCCcEEEE
Q 040735 262 LILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN------------YNSWRALSCPFG--AGAFGSKIVV 327 (779)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~------------~~~~~~l~~~l~--~~~~gs~Iiv 327 (779)
-|-+.++. ...++.+.....-+.-++++++|.+..-. .+..+.+..-+. ..+.|...|-
T Consensus 187 liGehVGd-------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 LIGEHVGD-------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHhhh-------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 12222221 11122222222224578999999883210 011112222221 1235666666
Q ss_pred EcCchhhHhhh-cc--cccccCCCCChHHHHHHHHHhh
Q 040735 328 THRNQGVAETM-RA--VSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 328 TtR~~~v~~~~-~~--~~~~~l~~L~~~~~~~lf~~~a 362 (779)
.|......... .+ ...++..--+++|-..++...+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 67665544321 11 2345556667788888887765
No 237
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.47 E-value=0.01 Score=67.12 Aligned_cols=43 Identities=35% Similarity=0.454 Sum_probs=35.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+++|.+..++.+...+.... ...+.|+|++|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~~------~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN------PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHH
Confidence 58999999999988764332 34678999999999999999875
No 238
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.47 E-value=0.0014 Score=38.45 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=11.1
Q ss_pred cceEeccccccccccccccc
Q 040735 623 LRFLNLSRTNIQILPESINS 642 (779)
Q Consensus 623 L~~L~l~~n~i~~lp~~~~~ 642 (779)
|++|+|++|+++.+|++|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55556665555555555443
No 239
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.47 E-value=0.0056 Score=58.62 Aligned_cols=36 Identities=36% Similarity=0.538 Sum_probs=27.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEE
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWT 248 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 248 (779)
...+|.+.|++|+||||+|+.++. .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999987 344445555554
No 240
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0086 Score=68.67 Aligned_cols=154 Identities=17% Similarity=0.211 Sum_probs=82.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC-----ceEEEEeCCCCCHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQ-----IKSWTCVFEDFDVFRV 259 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----~~~wv~~~~~~~~~~~ 259 (779)
.+++||++|++++++.|..... +- -.++|.+|||||++|.-++... +.+.-+ ..++ +
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NN--PvLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~-s---------- 231 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NN--PVLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIY-S---------- 231 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CC--CeEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEE-E----------
Confidence 4689999999999999976542 11 2467999999999987766521 111111 1111 0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHh-CCCeEEEEEeCCcCC---------ChhhhhhhcccCCCCCCCcEEEEEc
Q 040735 260 SKLILNSIASDQCTDKDDLNLLQEKLKKQL-SGKKFLVVLDDVWNE---------NYNSWRALSCPFGAGAFGSKIVVTH 329 (779)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivTt 329 (779)
-++..-+.+.. -..+.++....+.+.+ +.++.+|++|.++.- ..+.-+-+..+|..+ .--.|--||
T Consensus 232 -LD~g~LvAGak--yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT 307 (786)
T COG0542 232 -LDLGSLVAGAK--YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATT 307 (786)
T ss_pred -ecHHHHhcccc--ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEecc
Confidence 01111111111 2223333333333333 445899999998431 011112222223222 222344455
Q ss_pred CchhhHhhh-------cccccccCCCCChHHHHHHHHHh
Q 040735 330 RNQGVAETM-------RAVSTKTLKELSDDDCLRVLIQH 361 (779)
Q Consensus 330 R~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 361 (779)
-++ .-+.+ ...+.+.+...+.+++..+++-.
T Consensus 308 ~~E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDE-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHH-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 443 22221 23468889999999999988754
No 241
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.44 E-value=0.024 Score=56.76 Aligned_cols=89 Identities=20% Similarity=0.064 Sum_probs=54.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccc------CceEEEEeCCCCCHHHHHHHHHHHhhcCCC--------CCcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHF------QIKSWTCVFEDFDVFRVSKLILNSIASDQC--------TDKD 276 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~ 276 (779)
.-.++.|+|++|+|||+||.+++... ...- ..++|++....++...+. .+......... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 45799999999999999999887532 1122 456888887777765443 33333221100 0223
Q ss_pred cHHHHHHHHHHHhC----CCeEEEEEeCCc
Q 040735 277 DLNLLQEKLKKQLS----GKKFLVVLDDVW 302 (779)
Q Consensus 277 ~~~~~~~~l~~~l~----~k~~LlVlDdvw 302 (779)
+.+++...+..... .+.-++|+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 45555555554442 355589999883
No 242
>PRK06696 uridine kinase; Validated
Probab=96.43 E-value=0.0039 Score=62.20 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=35.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 189 GREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.|.+-+++|.+.+.... .++..+|+|.|.+|+||||||+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 36677888888887543 24678999999999999999999986
No 243
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.43 E-value=0.0096 Score=60.22 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=50.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccC-ceEEEEeCCCCC-HHHHHHHHHHHhhcC------CCCCcccHH-----
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQ-IKSWTCVFEDFD-VFRVSKLILNSIASD------QCTDKDDLN----- 279 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~il~~l~~~------~~~~~~~~~----- 279 (779)
.-++|.|.+|+|||||++.+++. +..+|. .++++-+.+... ..++...+...=... ...+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 46799999999999999999983 444554 455666665543 344444444321100 000111111
Q ss_pred HHHHHHHHHh--C-CCeEEEEEeCC
Q 040735 280 LLQEKLKKQL--S-GKKFLVVLDDV 301 (779)
Q Consensus 280 ~~~~~l~~~l--~-~k~~LlVlDdv 301 (779)
...-.+.+++ + ++.+|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122234444 3 89999999998
No 244
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.42 E-value=0.012 Score=57.21 Aligned_cols=89 Identities=19% Similarity=0.100 Sum_probs=49.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCC-CCCHHHHHHHHHHHhhcCCCC--CcccHHH-HHHHHHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFE-DFDVFRVSKLILNSIASDQCT--DKDDLNL-LQEKLKK 287 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~--~~~~~~~-~~~~l~~ 287 (779)
++++.++|+.|+||||.+..++.....+ -..+..++... .....+-++...+.++.+... ...+... +.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4799999999999999998887643322 23345555432 224556667777777755321 1222333 3333433
Q ss_pred HhCCCeEEEEEeCCc
Q 040735 288 QLSGKKFLVVLDDVW 302 (779)
Q Consensus 288 ~l~~k~~LlVlDdvw 302 (779)
.-..+-=++++|=..
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322223367777663
No 245
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.42 E-value=0.011 Score=57.26 Aligned_cols=129 Identities=19% Similarity=0.216 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCC----CC-----CHHH---
Q 040735 191 EKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFE----DF-----DVFR--- 258 (779)
Q Consensus 191 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~----~~-----~~~~--- 258 (779)
..+-....+.|.. ..++.+.|++|.|||.||-+..-+.-..+.|+..+++.-.- .. +..+
T Consensus 6 ~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~ 77 (205)
T PF02562_consen 6 NEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKME 77 (205)
T ss_dssp SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------
T ss_pred CHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHH
Confidence 3444556666652 24899999999999999987765443446777666653211 11 0000
Q ss_pred -HHHHHHHHhhcCCCCCcccHHHHHHHH------HHHhCCC---eEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEE
Q 040735 259 -VSKLILNSIASDQCTDKDDLNLLQEKL------KKQLSGK---KFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVT 328 (779)
Q Consensus 259 -~~~~il~~l~~~~~~~~~~~~~~~~~l------~~~l~~k---~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivT 328 (779)
....+...+..-. .....+.+.+.= ..+++|+ ..+||+|++.+....++..+... .+.||+||++
T Consensus 78 p~~~p~~d~l~~~~--~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~ 152 (205)
T PF02562_consen 78 PYLRPIYDALEELF--GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIIT 152 (205)
T ss_dssp TTTHHHHHHHTTTS---TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEE
T ss_pred HHHHHHHHHHHHHh--ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEe
Confidence 1111222221110 111222222100 1233443 46999999988777777766554 4568999998
Q ss_pred cCch
Q 040735 329 HRNQ 332 (779)
Q Consensus 329 tR~~ 332 (779)
--..
T Consensus 153 GD~~ 156 (205)
T PF02562_consen 153 GDPS 156 (205)
T ss_dssp E---
T ss_pred cCce
Confidence 7654
No 246
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.35 E-value=0.0076 Score=62.73 Aligned_cols=85 Identities=22% Similarity=0.172 Sum_probs=54.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCC----CCcccHHHHHHHH
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQC----TDKDDLNLLQEKL 285 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l 285 (779)
+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.+++. .+++++.... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 34578999999999999999988753 22333567888887776653 2233322110 0333455566666
Q ss_pred HHHhC-CCeEEEEEeCC
Q 040735 286 KKQLS-GKKFLVVLDDV 301 (779)
Q Consensus 286 ~~~l~-~k~~LlVlDdv 301 (779)
...++ +..-+||+|.+
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55553 45669999998
No 247
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.34 E-value=0.045 Score=64.94 Aligned_cols=180 Identities=13% Similarity=0.112 Sum_probs=93.4
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDS-------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDV 256 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 256 (779)
-.++.|.+..++.|.+.+.-.-. -+-...+-+.++|++|+|||++|+.+.+. ....| +.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH---
Confidence 34578888888877776542110 01123456889999999999999999973 22222 222211
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCC--------Chh----hhhhhcccCCC--CCCC
Q 040735 257 FRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNE--------NYN----SWRALSCPFGA--GAFG 322 (779)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~--------~~~----~~~~l~~~l~~--~~~g 322 (779)
+++... .......+...+...-...+.+|+||++..- ... ...++...+.. ...+
T Consensus 522 -----~l~~~~------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 -----EILSKW------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred -----HHhhcc------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 111111 1111222333333333567899999998421 000 01112222221 1234
Q ss_pred cEEEEEcCchhhHhh-h----cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh
Q 040735 323 SKIVVTHRNQGVAET-M----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 389 (779)
Q Consensus 323 s~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P 389 (779)
.-||.||........ + .-...+.++..+.++-.++|......... ...-+ ...+++.|.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHcCCCC
Confidence 456667765543221 1 12356778888888888888765422111 11112 345667777654
No 248
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.041 Score=60.25 Aligned_cols=155 Identities=16% Similarity=0.227 Sum_probs=86.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSG 291 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 291 (779)
+.=|.+||++|+|||-||++|+|. .+-+| ++|-.+ +++...- ........+...+.-..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP--------ELlNkYV------GESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP--------ELLNKYV------GESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH--------HHHHHHh------hhHHHHHHHHHHHhhcC
Confidence 456789999999999999999994 44444 555443 2222211 11223333444444456
Q ss_pred CeEEEEEeCCcCC-----Chhhh------hhhcccCCC--CCCCcEEEEEcCchhhHhh--hc---ccccccCCCCChHH
Q 040735 292 KKFLVVLDDVWNE-----NYNSW------RALSCPFGA--GAFGSKIVVTHRNQGVAET--MR---AVSTKTLKELSDDD 353 (779)
Q Consensus 292 k~~LlVlDdvw~~-----~~~~~------~~l~~~l~~--~~~gs~IivTtR~~~v~~~--~~---~~~~~~l~~L~~~~ 353 (779)
-+++|+||.+..- +...| .++..-+.. ...|.-||-.|...++... +. -+...-++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 8999999998431 00111 222222221 2346667777765544321 11 23566778888888
Q ss_pred HHHHHHHhhcCCCCC-CCChhHHHHHHHHHHHcCCCh
Q 040735 354 CLRVLIQHSLGARDF-NIPQSLKEVAEKIVKKCKGLP 389 (779)
Q Consensus 354 ~~~lf~~~a~~~~~~-~~~~~~~~~~~~I~~~c~G~P 389 (779)
-..+++...-....+ ...-.+.++++. .+|.|.-
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 888888776431111 222345555553 4666654
No 249
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.31 E-value=0.0051 Score=57.80 Aligned_cols=87 Identities=24% Similarity=0.319 Sum_probs=61.5
Q ss_pred hhhcCCCCccEEEecCCCCCccCccccC-CCccceEeccccccccccc--ccccccccceeeccCCcchhhchh----hh
Q 040735 592 QRLLNLPRLRVFSLHGYHISKLPNEIGN-LKHLRFLNLSRTNIQILPE--SINSLYNLHTILLEDCRRLKKLCK----NM 664 (779)
Q Consensus 592 ~~~~~l~~L~~L~l~~n~l~~lp~~~~~-l~~L~~L~l~~n~i~~lp~--~~~~L~~L~~L~l~~~~~~~~lp~----~~ 664 (779)
+.+..++.|..|.|++|.|+.+-+.+.. +++|..|.|.+|+|.++-+ .+..++.|++|.+-+| .....+. -+
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl 136 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVL 136 (233)
T ss_pred ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeEEE
Confidence 3445778888888888888887655544 4568888888888876532 3566778888888887 4444432 25
Q ss_pred cCccccceeecCCCc
Q 040735 665 GNLMKLHHLRNPNVH 679 (779)
Q Consensus 665 ~~l~~L~~L~l~~~~ 679 (779)
.++++|+.||..+-.
T Consensus 137 ~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKVT 151 (233)
T ss_pred EecCcceEeehhhhh
Confidence 678888888877643
No 250
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.30 E-value=0.0028 Score=69.72 Aligned_cols=49 Identities=27% Similarity=0.385 Sum_probs=39.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+++|.++.+++|++.|.......+.+-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999433211233557999999999999999999986
No 251
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.30 E-value=0.02 Score=56.90 Aligned_cols=43 Identities=16% Similarity=0.055 Sum_probs=31.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD 255 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 255 (779)
.-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4589999999999999999998763 222223567777655543
No 252
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.26 E-value=0.026 Score=66.97 Aligned_cols=180 Identities=15% Similarity=0.125 Sum_probs=91.4
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDS-------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVF 257 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 257 (779)
.++.|.+..++++.+++...-. -+-...+-+.++|++|+|||+||+.+++. ....| +.+...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH----
Confidence 4588999999998887642100 01123467889999999999999999873 22222 222211
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh-----------hhhhhhcccCCCC-CCCcEE
Q 040735 258 RVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY-----------NSWRALSCPFGAG-AFGSKI 325 (779)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~~-~~gs~I 325 (779)
++ .... .......+...+.......+.+|+||++..-.. .....+...+... ..+..+
T Consensus 247 ~i----~~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 EI----MSKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred HH----hccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 1000 111122333334444456778999999833100 0111222222211 123334
Q ss_pred EE-EcCchh-hHhhhc----ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChH
Q 040735 326 VV-THRNQG-VAETMR----AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL 390 (779)
Q Consensus 326 iv-TtR~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PL 390 (779)
|| ||.... +...+. -...+.+...+.++-.+++....-.... ... .....+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccc----cCHHHHHHhCCCCCH
Confidence 44 454332 211111 1245677777888888888754321111 111 124567778877653
No 253
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.22 E-value=0.0095 Score=56.23 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=32.0
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 187 VYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
++|....+.++.+.+..... ....|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 46777778888777754332 2256779999999999999999873
No 254
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.19 E-value=0.012 Score=61.26 Aligned_cols=86 Identities=21% Similarity=0.161 Sum_probs=54.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCC----CCcccHHHHHHHH
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQC----TDKDDLNLLQEKL 285 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l 285 (779)
+.-+++-|+|++|+||||||.++... ....-..++|++..+.++.. .+++++.... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35589999999999999999887763 22233456788777666653 2333332211 0334455556666
Q ss_pred HHHhC-CCeEEEEEeCCc
Q 040735 286 KKQLS-GKKFLVVLDDVW 302 (779)
Q Consensus 286 ~~~l~-~k~~LlVlDdvw 302 (779)
....+ +..-++|+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456799999983
No 255
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.17 E-value=0.013 Score=59.54 Aligned_cols=55 Identities=20% Similarity=0.126 Sum_probs=38.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccc----ccCceEEEEeCCCCCHHHHHHHHHHHh
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQR----HFQIKSWTCVFEDFDVFRVSKLILNSI 267 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l 267 (779)
-.+.=|+|++|+|||.|+.+++-...+.. .=..++|++-...|+...+. +|++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 35888999999999999987764322221 12357999998989887764 455544
No 256
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.17 E-value=0.018 Score=59.54 Aligned_cols=87 Identities=18% Similarity=0.087 Sum_probs=46.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccc-cccCceEEEEeCCCC-CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQ-RHFQIKSWTCVFEDF-DVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQ 288 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 288 (779)
+.+++.|+|++|+||||++..+....... ..+ .+..++..... ...+.+....+.++.+.. ...+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHHc
Confidence 45799999999999999999887633222 112 33445433211 122233333333343332 233444555555433
Q ss_pred hCCCeEEEEEeCC
Q 040735 289 LSGKKFLVVLDDV 301 (779)
Q Consensus 289 l~~k~~LlVlDdv 301 (779)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 33 347777753
No 257
>PRK04132 replication factor C small subunit; Provisional
Probab=96.16 E-value=0.093 Score=61.70 Aligned_cols=157 Identities=11% Similarity=0.036 Sum_probs=94.4
Q ss_pred CCCCcHHHHHHHHhcccccccccC-ceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEE
Q 040735 220 LGGVGKTTLAQLVYQDDRVQRHFQ-IKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVL 298 (779)
Q Consensus 220 ~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVl 298 (779)
|.++||||+|..++++. ..+.+. ..+-++.+...... ..++++..+..... . -..+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~-~--------------~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKP-I--------------GGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC-c--------------CCCCCEEEEE
Confidence 67899999999998742 112221 24555666544443 33444433322111 0 0124579999
Q ss_pred eCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch-hhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHH
Q 040735 299 DDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ-GVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKE 376 (779)
Q Consensus 299 Ddvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~ 376 (779)
|++...+......+...+-.....+++|.+|.+. .+...+ .....+.+.+++.++....+...+-... ...+ .+
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i~---~e 712 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LELT---EE 712 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCCC---HH
Confidence 9998776667777777666544456666666554 333332 2346889999999998887776543221 1111 35
Q ss_pred HHHHHHHHcCCChHHHHHHHh
Q 040735 377 VAEKIVKKCKGLPLAAKTLGG 397 (779)
Q Consensus 377 ~~~~I~~~c~G~PLai~~~~~ 397 (779)
....|++.|+|.+-.+..+..
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 678899999999865544433
No 258
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.16 E-value=0.017 Score=53.53 Aligned_cols=117 Identities=18% Similarity=0.108 Sum_probs=59.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCC---CCHHHHHHHHHHHh-----hcCC----CCCcc---c
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFED---FDVFRVSKLILNSI-----ASDQ----CTDKD---D 277 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~il~~l-----~~~~----~~~~~---~ 277 (779)
..|-|++..|.||||+|....- +...+=..+.++..-.. ......++.+ ..+ +... ..... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4788889999999999976654 22222112333333222 2333333222 000 0000 00001 1
Q ss_pred HHHHHHHHHHHhCC-CeEEEEEeCCcC---CChhhhhhhcccCCCCCCCcEEEEEcCch
Q 040735 278 LNLLQEKLKKQLSG-KKFLVVLDDVWN---ENYNSWRALSCPFGAGAFGSKIVVTHRNQ 332 (779)
Q Consensus 278 ~~~~~~~l~~~l~~-k~~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 332 (779)
.....+..++.+.. +-=|+|||++-. -...+.+.+...+.....+..+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11223334444444 444999999832 12234455666665566678899999985
No 259
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.15 E-value=0.01 Score=60.08 Aligned_cols=81 Identities=22% Similarity=0.204 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSG 291 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 291 (779)
..-+.++|.+|+|||.||.++.+..- ..=..+.+++ ..+++.++-...... .....+.+.+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~------~~el~~~Lk~~~~~~---------~~~~~l~~~l~- 166 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFIT------APDLLSKLKAAFDEG---------RLEEKLLRELK- 166 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhcC---------chHHHHHHHhh-
Confidence 35789999999999999999988433 2222344443 334444444443321 11122222111
Q ss_pred CeEEEEEeCCcCCChhhhh
Q 040735 292 KKFLVVLDDVWNENYNSWR 310 (779)
Q Consensus 292 k~~LlVlDdvw~~~~~~~~ 310 (779)
+-=||||||+.......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2349999999665444444
No 260
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.11 E-value=0.047 Score=55.59 Aligned_cols=172 Identities=18% Similarity=0.133 Sum_probs=90.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc-cccccccCceEEEEeCCCCCHHH-HHHHH
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD-DRVQRHFQIKSWTCVFEDFDVFR-VSKLI 263 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~~~~~~~~~-~~~~i 263 (779)
.++|-.++...+..++...-- -+.-..|.|+|+.|.|||+|......+ .++.++| +-|...+....++ .++.|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 578888888888888754211 112246789999999999999877765 1233333 4444544443322 34555
Q ss_pred HHHhhcCCCC---CcccHHHHHHHHHHHhC------CCeEEEEEeCCcCCChh-----hhhhhcccCCCCCCCcEEEEEc
Q 040735 264 LNSIASDQCT---DKDDLNLLQEKLKKQLS------GKKFLVVLDDVWNENYN-----SWRALSCPFGAGAFGSKIVVTH 329 (779)
Q Consensus 264 l~~l~~~~~~---~~~~~~~~~~~l~~~l~------~k~~LlVlDdvw~~~~~-----~~~~l~~~l~~~~~gs~IivTt 329 (779)
..++...-.. ...+..+....+-..|+ +-++++|+|.+.-.... -+.-+...-....+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 5555332111 11222233334444442 23678888877321110 0111111111234567788999
Q ss_pred CchhhH-------hhhcccccccCCCCChHHHHHHHHHhh
Q 040735 330 RNQGVA-------ETMRAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 330 R~~~v~-------~~~~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
|-.... ..+.-..++-+++++-++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 965322 222222345556677777777776654
No 261
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.07 E-value=0.012 Score=61.22 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..++.++|||++|+|||.+|+.++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999984
No 262
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.05 E-value=0.017 Score=67.51 Aligned_cols=120 Identities=16% Similarity=0.156 Sum_probs=65.9
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHH
Q 040735 186 EVYGREKDKEAIVELLLRDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKL 262 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 262 (779)
.++|.+..++.+...+..... ........+.++|++|+|||++|+.+... .... .+.++.++-.....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~~---~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGIE---LLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCCC---cEEeechhhccccc----
Confidence 478999999999988864211 01223457889999999999999998763 2222 23344333221111
Q ss_pred HHHHhhcCCCCCcc-cHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCC
Q 040735 263 ILNSIASDQCTDKD-DLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFG 317 (779)
Q Consensus 263 il~~l~~~~~~~~~-~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~ 317 (779)
+..-++.+...... ....+.+.++ +....+|+||++...+.+.+..+...+.
T Consensus 530 ~~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred HHHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 11112222110111 1112222222 2344699999997766666666655443
No 263
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.05 E-value=0.0051 Score=56.21 Aligned_cols=108 Identities=17% Similarity=0.113 Sum_probs=59.1
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-ccccCceEEEEeCCCCCHHHHHHHHHHH
Q 040735 188 YGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRV-QRHFQIKSWTCVFEDFDVFRVSKLILNS 266 (779)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~il~~ 266 (779)
||+...++++.+.+..-.. ....|.|.|.+|+||+++|+.++..... ...|... .+..
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC--------------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh--------------
Confidence 4666667777666654321 2356889999999999999988764322 1122110 0000
Q ss_pred hhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCC-CCCcEEEEEcCch
Q 040735 267 IASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAG-AFGSKIVVTHRNQ 332 (779)
Q Consensus 267 l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~IivTtR~~ 332 (779)
.+ .+.+.. . +.--|+|+|+..-+......+...+... ....|+|.||+..
T Consensus 60 ---------~~----~~~l~~-a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 60 ---------LP----AELLEQ-A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------TC----HHHHHH-C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------Cc----HHHHHH-c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 00 111111 1 4446779999665555555555555422 4578999999864
No 264
>PTZ00494 tuzin-like protein; Provisional
Probab=96.03 E-value=0.53 Score=50.23 Aligned_cols=168 Identities=12% Similarity=0.102 Sum_probs=100.1
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 182 VNEAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
.....+|.|+.+-..+.+.|..-+. .+++++.+.|.-|.||++|.+.....+.. ..++|.+....| -++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~ED---tLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTED---TLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCcc---hHH
Confidence 4456799999999988888876553 57899999999999999999887763322 356788876654 467
Q ss_pred HHHHHhhcCCCCC-cccHHHHHHHH---HHHhCCCeEEEEEeCCcCCC-hhhhhhhcccCCCCCCCcEEEEEcCchhhHh
Q 040735 262 LILNSIASDQCTD-KDDLNLLQEKL---KKQLSGKKFLVVLDDVWNEN-YNSWRALSCPFGAGAFGSKIVVTHRNQGVAE 336 (779)
Q Consensus 262 ~il~~l~~~~~~~-~~~~~~~~~~l---~~~l~~k~~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~ 336 (779)
.+.++++.+.... .+-++-+.+.. +....++.-+||+-==...+ ..-+.+.. .|.....-|+|++---.+.+..
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhch
Confidence 7888887764321 11122222222 22234555566653211111 11122211 2222334567777555443321
Q ss_pred hh---cccccccCCCCChHHHHHHHHHh
Q 040735 337 TM---RAVSTKTLKELSDDDCLRVLIQH 361 (779)
Q Consensus 337 ~~---~~~~~~~l~~L~~~~~~~lf~~~ 361 (779)
.. ..-..|.+++++.++|.+...+.
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhcc
Confidence 11 12256889999999998876554
No 265
>PRK09354 recA recombinase A; Provisional
Probab=95.98 E-value=0.018 Score=60.41 Aligned_cols=86 Identities=21% Similarity=0.161 Sum_probs=56.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCC----CCcccHHHHHHHH
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQC----TDKDDLNLLQEKL 285 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l 285 (779)
+.-+++-|+|++|+||||||.+++.. ....=..++|++....++.. .+++++.... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35589999999999999999988753 22333567898888777753 2333332210 0233455666666
Q ss_pred HHHhC-CCeEEEEEeCCc
Q 040735 286 KKQLS-GKKFLVVLDDVW 302 (779)
Q Consensus 286 ~~~l~-~k~~LlVlDdvw 302 (779)
...++ +..-+||+|-+-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55553 456699999983
No 266
>PHA02244 ATPase-like protein
Probab=95.98 E-value=0.061 Score=56.59 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
-|.|+|++|+|||+||++++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999873
No 267
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.98 E-value=0.03 Score=52.53 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC
Q 040735 214 VISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD 255 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 255 (779)
++.|+|++|+||||++..+.... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36799999999999999987632 22234566777665543
No 268
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.95 E-value=0.055 Score=50.63 Aligned_cols=62 Identities=10% Similarity=0.203 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeCCcC--CChhhhhhhcccCCCCCCCcEEEEEcCchhhHhhhc
Q 040735 278 LNLLQEKLKKQLSGKKFLVVLDDVWN--ENYNSWRALSCPFGAGAFGSKIVVTHRNQGVAETMR 339 (779)
Q Consensus 278 ~~~~~~~l~~~l~~k~~LlVlDdvw~--~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~ 339 (779)
-++..-.+.+.+-+++-+|+-|.--. +....|+-+.-.-.-+..|..||++|-+..+.+.+.
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 34444556666778888998886421 112344433222222345899999999998776653
No 269
>PRK08233 hypothetical protein; Provisional
Probab=95.94 E-value=0.019 Score=55.24 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999863
No 270
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.93 E-value=0.025 Score=56.38 Aligned_cols=124 Identities=11% Similarity=0.090 Sum_probs=69.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCC-----CCCHHHHHHHHHHHhhcCCCC------CcccHHHH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFE-----DFDVFRVSKLILNSIASDQCT------DKDDLNLL 281 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~il~~l~~~~~~------~~~~~~~~ 281 (779)
.+++|+|..|+||||+++.+.. ....-...+++.-.+ .....+...++++.++..... +-..-+..
T Consensus 40 e~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 5899999999999999999986 222222333333211 222334456667766643311 22222233
Q ss_pred HHHHHHHhCCCeEEEEEeCCcCC-ChhhhhhhcccCCC--CCCCcEEEEEcCchhhHhhhc
Q 040735 282 QEKLKKQLSGKKFLVVLDDVWNE-NYNSWRALSCPFGA--GAFGSKIVVTHRNQGVAETMR 339 (779)
Q Consensus 282 ~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~IivTtR~~~v~~~~~ 339 (779)
.-.+.+.|.-++-++|.|..-+. +...-.++...+.. ...|-..+..|-+-.++..++
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 34456677888999999987432 11111222222221 123556777777777766654
No 271
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.93 E-value=0.13 Score=47.00 Aligned_cols=79 Identities=13% Similarity=0.291 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhccc-CcHHHHHHHHHHHHHHHhhhhh
Q 040735 4 IGEAVLTVSVELLIEKLASEGLELFTRHEKLRADFIKWKGMLEMIQAVLADAEDRQT-KDKAVKKWLDNLQNLAYDAEDV 82 (779)
Q Consensus 4 ~~~~~~s~~v~~l~~~l~s~~~~~~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~~~-~~~~~~~Wl~~lr~~ayd~eD~ 82 (779)
+++|++.++++.++..+ .........++.-+++|...++.|..++++.+.... -|..-+.-++++.+..-+++++
T Consensus 6 ~~gaalG~~~~eLlk~v----~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 6 VGGAALGAVFGELLKAV----IDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 45555555555555444 444555556778899999999999999999988543 2333377889999999999999
Q ss_pred hhhh
Q 040735 83 LDEL 86 (779)
Q Consensus 83 lD~~ 86 (779)
++.|
T Consensus 82 V~k~ 85 (147)
T PF05659_consen 82 VEKC 85 (147)
T ss_pred HHHh
Confidence 9987
No 272
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.017 Score=55.87 Aligned_cols=79 Identities=24% Similarity=0.260 Sum_probs=43.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCC-CCCcccHHHHHHHHHHH
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQ-CTDKDDLNLLQEKLKKQ 288 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~-~~~~~~~~~~~~~l~~~ 288 (779)
.++.+|+|.|.+|+||||+|+.++. .+...+.. -++. ..+-...-.....+...... .....+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~~~--~I~~-D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEKVV--VISL-DDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCcce--Eeec-cccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 3568999999999999999999987 33322111 1111 11111000011111111110 11556777888888888
Q ss_pred hCCCe
Q 040735 289 LSGKK 293 (779)
Q Consensus 289 l~~k~ 293 (779)
+.+++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 273
>PRK13695 putative NTPase; Provisional
Probab=95.90 E-value=0.0079 Score=57.44 Aligned_cols=22 Identities=45% Similarity=0.505 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
-++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 274
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.88 E-value=0.0066 Score=59.59 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=56.5
Q ss_pred CCCccceEecccccccccccccccccccceeeccCC--cchhhchhhhcCccccceeecCCCcccccCCcc---cCCCCC
Q 040735 619 NLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDC--RRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKG---FGKLTC 693 (779)
Q Consensus 619 ~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~---~~~L~~ 693 (779)
.+..|+.|++.+..++.+ ..+-.|++|++|.++.| .....++.-..++++|++|++++|+ +.. +.. +..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhcc
Confidence 345566666666555544 22446889999999999 5566677667778999999999998 433 333 445566
Q ss_pred CcccCceeeCC
Q 040735 694 LLTLSRFVVGK 704 (779)
Q Consensus 694 L~~L~~~~~~~ 704 (779)
|..|.++.+..
T Consensus 118 L~~Ldl~n~~~ 128 (260)
T KOG2739|consen 118 LKSLDLFNCSV 128 (260)
T ss_pred hhhhhcccCCc
Confidence 66666665543
No 275
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.11 Score=59.56 Aligned_cols=182 Identities=13% Similarity=0.100 Sum_probs=97.4
Q ss_pred CccccchhhH---HHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHH
Q 040735 185 AEVYGREKDK---EAIVELLLRDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFR 258 (779)
Q Consensus 185 ~~~vGr~~~~---~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 258 (779)
.++.|-++.+ +++++.|..+.. -+..-++=+.++|++|+|||-||++++....+ . |++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV--P-----F~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV--P-----FFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC--c-----eeeechH-----
Confidence 4678877554 455555544321 12344677889999999999999999984322 2 3444432
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCC---------------hhhhhhhcccCCCCCC-
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNEN---------------YNSWRALSCPFGAGAF- 321 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~---------------~~~~~~l~~~l~~~~~- 321 (779)
+.++.+... +. ..++.+... =...++++.+|++.... ....+++..-+.....
T Consensus 379 ---EFvE~~~g~---~a----srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ---EFVEMFVGV---GA----SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ---HHHHHhccc---ch----HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 222222211 11 112222222 23568899988873211 1122333322222222
Q ss_pred -CcEEEEEcCchhhHhhh--c---ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHH
Q 040735 322 -GSKIVVTHRNQGVAETM--R---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 392 (779)
Q Consensus 322 -gs~IivTtR~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 392 (779)
+.-++-+|+..++.... . -+..+.+..-+.....++|..++-.... ..+..++++ |+...-|.+=|.
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 22233345544443221 1 2356777777888888889887744332 244556666 888888887543
No 276
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.008 Score=54.43 Aligned_cols=23 Identities=43% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
--|+|.|++|+||||+++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 46899999999999999999873
No 277
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.82 E-value=0.021 Score=63.79 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=66.5
Q ss_pred CccccchhhHHHHHHHHhcCCC----------------------------CCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 040735 185 AEVYGREKDKEAIVELLLRDDS----------------------------RADDGFSVISIKGLGGVGKTTLAQLVYQDD 236 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~----------------------------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 236 (779)
.+++|-+.--..+..||...+. ...+.-+++.++|++|+||||||+-++.+.
T Consensus 271 tdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 271 TDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred HHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHhc
Confidence 3467777777777777743110 123456899999999999999999888632
Q ss_pred ccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC
Q 040735 237 RVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN 305 (779)
Q Consensus 237 ~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~ 305 (779)
- | .++=+..|+.-+...+-..|...+......+ ..+++..||+|.+....
T Consensus 351 G----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~--------------adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 351 G----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD--------------ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred C----c-eEEEecccccccHHHHHHHHHHHHhhccccc--------------cCCCcceEEEecccCCc
Confidence 1 2 2455677777776666666665554432200 02678899999996544
No 278
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.016 Score=55.22 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
-|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 279
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.13 Score=57.19 Aligned_cols=161 Identities=12% Similarity=0.064 Sum_probs=80.9
Q ss_pred CCCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC
Q 040735 183 NEAEVYGREKDKEAIVELLLRDDS-------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD 255 (779)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 255 (779)
...++=|-++-+.+|.+...-+.. -+-..++-|..+|+||+|||++|+++.+ ..+-.| +++..+
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp-- 502 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP-- 502 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH--
Confidence 334455577666666654432110 0224567889999999999999999998 333334 333322
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh-----------hhhhhhcccCCCCCC--C
Q 040735 256 VFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY-----------NSWRALSCPFGAGAF--G 322 (779)
Q Consensus 256 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~~~~--g 322 (779)
+++... -......+.+..++.=+--+++|.||.+..-.. .-..++..-+..... +
T Consensus 503 ------EL~sk~------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 ------ELFSKY------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred ------HHHHHh------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 111111 111222333333333344578999998833100 001112122222111 2
Q ss_pred cEEEEEcCchhhH-hh-hc---ccccccCCCCChHHHHHHHHHhhcC
Q 040735 323 SKIVVTHRNQGVA-ET-MR---AVSTKTLKELSDDDCLRVLIQHSLG 364 (779)
Q Consensus 323 s~IivTtR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~a~~ 364 (779)
.-||-.|...+.. .. +. -+..+.++.-+.+.-.++|+.++-.
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 2233333332222 11 12 3466777777788888899887743
No 280
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.81 E-value=0.04 Score=57.83 Aligned_cols=56 Identities=18% Similarity=0.008 Sum_probs=38.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc----ccCceEEEEeCCCCCHHHHHHHHHHHh
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQR----HFQIKSWTCVFEDFDVFRVSKLILNSI 267 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l 267 (779)
.-.++.|+|.+|+|||+|+..++....... .-..++|++....++...+ ..+.+.+
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 457999999999999999998864221111 1135689998888887753 3444444
No 281
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.036 Score=59.64 Aligned_cols=52 Identities=29% Similarity=0.323 Sum_probs=37.6
Q ss_pred Cccccch---hhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 040735 185 AEVYGRE---KDKEAIVELLLRDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQDD 236 (779)
Q Consensus 185 ~~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 236 (779)
.++-|-| .|+++|++.|.++.. -+..=++=|.++|++|.|||-||+++....
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3466765 467788888865431 122336778999999999999999999743
No 282
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.77 E-value=0.028 Score=58.76 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=40.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccc----cccCceEEEEeCCCCCHHHHHHHHHHHhhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQ----RHFQIKSWTCVFEDFDVFRVSKLILNSIAS 269 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 269 (779)
.-+++-|+|++|+|||+|+.+++-..... ..=..++|++....|+++.+. ++++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 45788899999999999998876322211 111367899999988888765 45555543
No 283
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.019 Score=63.75 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=47.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCC--CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDF--DVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQ 288 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 288 (779)
...-|.|.|+.|+|||+||+++++... ++..-.+.+|+++.-. ..+.+++.+ .....+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l------------------~~vfse~ 490 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL------------------NNVFSEA 490 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH------------------HHHHHHH
Confidence 346788999999999999999998544 4444455666665432 222222222 2233455
Q ss_pred hCCCeEEEEEeCCc
Q 040735 289 LSGKKFLVVLDDVW 302 (779)
Q Consensus 289 l~~k~~LlVlDdvw 302 (779)
+...+-+|||||+.
T Consensus 491 ~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLD 504 (952)
T ss_pred HhhCCcEEEEcchh
Confidence 66789999999993
No 284
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.72 E-value=0.075 Score=51.01 Aligned_cols=120 Identities=14% Similarity=0.087 Sum_probs=61.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeC--CCCCHHHHH------HHHHHHhhcCC-----CCCcccHH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVF--EDFDVFRVS------KLILNSIASDQ-----CTDKDDLN 279 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~------~~il~~l~~~~-----~~~~~~~~ 279 (779)
.+++|+|+.|.|||||.+.+.... ......+++.-. ...+..... .++++.++... ...-..-+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 589999999999999999998732 223333433211 111221111 11344433221 00111122
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCcCC-ChhhhhhhcccCCCCC-C-CcEEEEEcCchhhH
Q 040735 280 LLQEKLKKQLSGKKFLVVLDDVWNE-NYNSWRALSCPFGAGA-F-GSKIVVTHRNQGVA 335 (779)
Q Consensus 280 ~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~-~-gs~IivTtR~~~v~ 335 (779)
...-.+...+-..+-++++|+--.. +......+...+.... . +..||++|.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2233344556667889999997431 2233333333333221 2 56788888776544
No 285
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.71 E-value=0.071 Score=56.43 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=33.1
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 187 VYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
++|....+.++.+.+..... .-..|.|.|..|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 36777777777766654332 2356899999999999999998763
No 286
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.68 E-value=0.03 Score=53.66 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.+++|.|+.|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999763
No 287
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.68 E-value=0.033 Score=59.23 Aligned_cols=89 Identities=18% Similarity=0.098 Sum_probs=48.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCC-CCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFE-DFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLS 290 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 290 (779)
..++.++|+.|+||||++..+............+..++... .....+-++...+.++.+.. ...+..++...+. .+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-AVKDGGDLQLALA-ELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-ecCCcccHHHHHH-Hhc
Confidence 36899999999999999999886322111112344444322 12334455555555554432 2223333333333 334
Q ss_pred CCeEEEEEeCCcC
Q 040735 291 GKKFLVVLDDVWN 303 (779)
Q Consensus 291 ~k~~LlVlDdvw~ 303 (779)
++ -++++|....
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 4566898843
No 288
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.67 E-value=0.025 Score=59.62 Aligned_cols=58 Identities=16% Similarity=0.050 Sum_probs=41.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccc----ccccCceEEEEeCCCCCHHHHHHHHHHHhhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRV----QRHFQIKSWTCVFEDFDVFRVSKLILNSIAS 269 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 269 (779)
.-.+.-|+|++|+|||+|+.+++-.... ...-..++|++....|++.++.. +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4578889999999999999888632222 11124679999999999887654 5555543
No 289
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.61 E-value=0.0055 Score=35.87 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=18.7
Q ss_pred CccEEEecCCCCCccCccccCC
Q 040735 599 RLRVFSLHGYHISKLPNEIGNL 620 (779)
Q Consensus 599 ~L~~L~l~~n~l~~lp~~~~~l 620 (779)
+|++|||++|+++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 290
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.56 E-value=0.00089 Score=63.91 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=70.1
Q ss_pred hcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCcccccee
Q 040735 594 LLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHL 673 (779)
Q Consensus 594 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 673 (779)
+..+...++||++.|++..+-..|+.+..|..|+++.|.+.-+|..++.+..+..+++..| ....+|.++++++.++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 4467778888888888877777777888888888888888888888888888888888777 778888888888888888
Q ss_pred ecCCCcc
Q 040735 674 RNPNVHS 680 (779)
Q Consensus 674 ~l~~~~~ 680 (779)
++.+|.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 8887773
No 291
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.55 E-value=0.044 Score=57.75 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=39.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc----ccCceEEEEeCCCCCHHHHHHHHHHHh
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQR----HFQIKSWTCVFEDFDVFRVSKLILNSI 267 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l 267 (779)
...++-|+|++|+|||+++.+++....... .=..++||+....|+...+. ++++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 457889999999999999998875422211 11268999998888877654 444443
No 292
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.055 Score=63.22 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=68.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCC--CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHH
Q 040735 186 EVYGREKDKEAIVELLLRDDSRAD--DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 263 (779)
.++|.++.+..|.+.+.....+.. .....+.+.|+.|+|||.||+++.. -+-+..+..+-++.++- .. +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~------~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEF------QE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhh------hh-h
Confidence 478888888888888876543212 2467778999999999999999875 22222233343433321 11 2
Q ss_pred HHHhhcCCC-CCcccHHHHHHHHHHHhCCCeE-EEEEeCCcCCChhhhhhhcccC
Q 040735 264 LNSIASDQC-TDKDDLNLLQEKLKKQLSGKKF-LVVLDDVWNENYNSWRALSCPF 316 (779)
Q Consensus 264 l~~l~~~~~-~~~~~~~~~~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l 316 (779)
.+.++.+.. .+.. ....|.+.++.++| +|+||||.-.+......+...+
T Consensus 634 skligsp~gyvG~e----~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 634 SKLIGSPPGYVGKE----EGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred hhccCCCcccccch----hHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 222233221 1112 23356666677776 7778999766655555444443
No 293
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.52 E-value=0.067 Score=58.28 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=21.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+.++.++|++|+||||+|..++.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3468999999999999999887765
No 294
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.51 E-value=0.061 Score=54.72 Aligned_cols=89 Identities=22% Similarity=0.155 Sum_probs=56.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHH-hhcCCCCCcccHHHH---HHHH
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNS-IASDQCTDKDDLNLL---QEKL 285 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~-l~~~~~~~~~~~~~~---~~~l 285 (779)
+.-+++=|+|+.|.||||+|.+++-. .+..-..++|++.-..+++..+.. +... +..-......+.++. ++.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 45688889999999999999887753 333344789999999999876643 3333 221111123333333 3333
Q ss_pred HHHhCCCeEEEEEeCC
Q 040735 286 KKQLSGKKFLVVLDDV 301 (779)
Q Consensus 286 ~~~l~~k~~LlVlDdv 301 (779)
......+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 3333334569999988
No 295
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.51 E-value=0.043 Score=57.97 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=39.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccc----cCceEEEEeCCCCCHHHHHHHHHHHh
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRH----FQIKSWTCVFEDFDVFRVSKLILNSI 267 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~il~~l 267 (779)
...++-|+|++|+|||+++.+++........ =..++|++..+.+++..+. ++++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHc
Confidence 4578899999999999999988753221111 1368999998888877664 334444
No 296
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.51 E-value=0.072 Score=53.08 Aligned_cols=121 Identities=13% Similarity=0.171 Sum_probs=65.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccc-----cc---c---cc---CceEEEEeCCCC------CH----------------
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDR-----VQ---R---HF---QIKSWTCVFEDF------DV---------------- 256 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~-----~~---~---~F---~~~~wv~~~~~~------~~---------------- 256 (779)
..++|+|+.|.|||||.+.+..-.. +. . .+ ..+.||.=...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6999999999999999999976211 00 0 01 123343211111 11
Q ss_pred ------HHHHHHHHHHhhcCCCC----Cccc-HHHHHHHHHHHhCCCeEEEEEeCCcC----CChhhhhhhcccCCCCCC
Q 040735 257 ------FRVSKLILNSIASDQCT----DKDD-LNLLQEKLKKQLSGKKFLVVLDDVWN----ENYNSWRALSCPFGAGAF 321 (779)
Q Consensus 257 ------~~~~~~il~~l~~~~~~----~~~~-~~~~~~~l~~~l~~k~~LlVlDdvw~----~~~~~~~~l~~~l~~~~~ 321 (779)
.+...+.++.++..... ..-+ -+...-.+.+.|..++=|++||.--. ......-++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 13344444544432110 1222 22333455677888999999998522 2223333444444444
Q ss_pred CcEEEEEcCchhhH
Q 040735 322 GSKIVVTHRNQGVA 335 (779)
Q Consensus 322 gs~IivTtR~~~v~ 335 (779)
|..||+.|-+-...
T Consensus 189 g~tIl~vtHDL~~v 202 (254)
T COG1121 189 GKTVLMVTHDLGLV 202 (254)
T ss_pred CCEEEEEeCCcHHh
Confidence 78888888876543
No 297
>PRK07667 uridine kinase; Provisional
Probab=95.50 E-value=0.018 Score=55.89 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 194 KEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 194 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455666664433 3458999999999999999999886
No 298
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.49 E-value=0.028 Score=54.66 Aligned_cols=107 Identities=14% Similarity=0.118 Sum_probs=52.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh---
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL--- 289 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l--- 289 (779)
+++.|.|++|+||||+++.+.......+ ..+.+......-. ..+.+..+.. ...+..........-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~Aa----~~L~~~~~~~----a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNKAA----KELREKTGIE----AQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHHHH----HHHHHHHTS-----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHHH----HHHHHhhCcc----hhhHHHHHhcCCcccccc
Confidence 5888999999999999998876322221 2223332222112 2222222211 111111110000000
Q ss_pred ---CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch
Q 040735 290 ---SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ 332 (779)
Q Consensus 290 ---~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 332 (779)
..++-+||+|+++--+...+..+...... .|+++|+.--..
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12335999999976665666666665554 367888765444
No 299
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.48 E-value=0.08 Score=55.94 Aligned_cols=57 Identities=18% Similarity=0.048 Sum_probs=40.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc----ccCceEEEEeCCCCCHHHHHHHHHHHhh
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQR----HFQIKSWTCVFEDFDVFRVSKLILNSIA 268 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~ 268 (779)
.-.++-|+|.+|+|||+|+..++-...... .-..++|++....|+++++ .+|++.++
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 457888999999999999987764222111 1126899999999988776 45555554
No 300
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.47 E-value=0.095 Score=59.85 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=38.6
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 183 NEAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
....++|....+.++.+.+..... ....|.|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHh
Confidence 345799999999988888764321 2346789999999999999999874
No 301
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.45 E-value=0.077 Score=58.00 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=47.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC--HHHHHHHHHHHhhcCCCC--CcccHHHHHHHH
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD--VFRVSKLILNSIASDQCT--DKDDLNLLQEKL 285 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~--~~~~~~~~~~~l 285 (779)
..+.+|.++|.+|+||||+|..++....- ..+ .+..|++. .+. ..+.++.+..+++.+... ...+........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D-~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~a 169 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAAD-TYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEG 169 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCC-CCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 35789999999999999999988763321 122 23333332 222 234455555555443221 112323322222
Q ss_pred HHHhCCCeEEEEEeCCc
Q 040735 286 KKQLSGKKFLVVLDDVW 302 (779)
Q Consensus 286 ~~~l~~k~~LlVlDdvw 302 (779)
.+.+.+. -++|+|..-
T Consensus 170 l~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 170 LEKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHHhhcC-CEEEEECCC
Confidence 2333333 567788773
No 302
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.45 E-value=0.053 Score=54.56 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=53.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCC-----------------
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQC----------------- 272 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----------------- 272 (779)
+.-+++.|+|.+|+|||++|.++.... . ..=..++|++..+. ..++.+.+ .+++-...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~-~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-L-KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-H-hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 345799999999999999999985421 1 12245678887654 34444432 22221100
Q ss_pred --CCcccHHHHHHHHHHHhCC-CeEEEEEeCCc
Q 040735 273 --TDKDDLNLLQEKLKKQLSG-KKFLVVLDDVW 302 (779)
Q Consensus 273 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw 302 (779)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0122345666667666653 56689999974
No 303
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.44 E-value=0.016 Score=56.54 Aligned_cols=110 Identities=14% Similarity=0.171 Sum_probs=57.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHH-HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVF-RVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSG 291 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 291 (779)
.+|.|+|+.|+||||++..+... ........++. +.++.... .-...++.+. . ...+.....+.++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~----~-vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQR----E-VGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeec----c-cCCCccCHHHHHHHHhcC
Confidence 47899999999999999987653 22222233332 22221110 0000111110 0 111223455667777777
Q ss_pred CeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhhH
Q 040735 292 KKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGVA 335 (779)
Q Consensus 292 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~ 335 (779)
.+=++++|.+.+. +......... ..|..++.|+-...+.
T Consensus 74 ~pd~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 7889999999543 3333332222 2355577776655443
No 304
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.43 E-value=0.096 Score=48.14 Aligned_cols=104 Identities=18% Similarity=0.132 Sum_probs=53.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
.+++|+|..|.|||||++.+..... .....+|+.-.. .+.--. +-..-+...-.+...+-.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~--~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE--QLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc--cCCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999986322 222333332100 000000 0011112222334455556
Q ss_pred eEEEEEeCCcCC-ChhhhhhhcccCCCCCCCcEEEEEcCchhhHh
Q 040735 293 KFLVVLDDVWNE-NYNSWRALSCPFGAGAFGSKIVVTHRNQGVAE 336 (779)
Q Consensus 293 ~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~ 336 (779)
+-++++|+--.. +......+...+... +..||++|.+.....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 778899987431 223333333333322 246777777665443
No 305
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.42 E-value=0.05 Score=51.27 Aligned_cols=115 Identities=15% Similarity=0.027 Sum_probs=58.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCC--CCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFED--FDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLS 290 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 290 (779)
.+++|+|+.|.|||||.+.+.... ......+++.-... .+..+..+ ..++... +-..-+...-.+...+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~--qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY--QLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE--ecCHHHHHHHHHHHHHh
Confidence 589999999999999999998632 22333444322111 11111111 1111100 11112222333445556
Q ss_pred CCeEEEEEeCCcCC-ChhhhhhhcccCCCC-CCCcEEEEEcCchhhH
Q 040735 291 GKKFLVVLDDVWNE-NYNSWRALSCPFGAG-AFGSKIVVTHRNQGVA 335 (779)
Q Consensus 291 ~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTtR~~~v~ 335 (779)
.++-++++|+--.. +......+...+... ..|..||++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 67788899997432 223333333333221 2366788888876543
No 306
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.15 Score=57.66 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=84.5
Q ss_pred CccccchhhHHHHHHHHh---cCCC----CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHH
Q 040735 185 AEVYGREKDKEAIVELLL---RDDS----RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVF 257 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~---~~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 257 (779)
.++.|.+...+.+.+.+. .... .+-...+.+.++|++|.|||.||+++.+ ....+| +.+...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH----
Confidence 345566655555544432 2111 0123556899999999999999999998 333334 222221
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcC-----CCh------hhhhhhcccCC--CCCCCcE
Q 040735 258 RVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWN-----ENY------NSWRALSCPFG--AGAFGSK 324 (779)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~-----~~~------~~~~~l~~~l~--~~~~gs~ 324 (779)
.++... .......+.+......+..++.|++|.+.. ... ....++...+. ....+..
T Consensus 311 ----~l~sk~------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 311 ----ELLSKW------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred ----HHhccc------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE
Confidence 111110 112223333444444467899999999932 000 11222222232 1223334
Q ss_pred EEEEcCchhhHhhh-----cccccccCCCCChHHHHHHHHHhhc
Q 040735 325 IVVTHRNQGVAETM-----RAVSTKTLKELSDDDCLRVLIQHSL 363 (779)
Q Consensus 325 IivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~ 363 (779)
+|-||......... .-...+.+.+-+.++..+.|..+..
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 55555544332211 1235788888999999999988764
No 307
>PRK05439 pantothenate kinase; Provisional
Probab=95.40 E-value=0.088 Score=54.63 Aligned_cols=82 Identities=21% Similarity=0.105 Sum_probs=44.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcccccccc--cCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 040735 209 DDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRH--FQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLK 286 (779)
Q Consensus 209 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~ 286 (779)
.+.+-+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+...+.+..- ..+......+..+.+.+.+.|.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHH
Confidence 34678999999999999999998875 22211 1123333333322222222110 0111111114567777777777
Q ss_pred HHhCCCe
Q 040735 287 KQLSGKK 293 (779)
Q Consensus 287 ~~l~~k~ 293 (779)
....++.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 7766664
No 308
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.40 E-value=0.084 Score=50.22 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=58.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc---cccccc---cC--ceEEEEeCCCCCHHHHHHHHHHHhhcCCC---C--Cccc-H
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD---DRVQRH---FQ--IKSWTCVFEDFDVFRVSKLILNSIASDQC---T--DKDD-L 278 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~---~~~~~~---F~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~---~--~~~~-~ 278 (779)
.+++|+|+.|+|||||.+.+..+ ..+... |. ...|+ .+ .+.+..++.... . ...+ -
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 58999999999999999988632 111111 11 12222 21 345555553211 0 1111 1
Q ss_pred HHHHHHHHHHhCCC--eEEEEEeCCcCC-ChhhhhhhcccCCCC-CCCcEEEEEcCchhhHh
Q 040735 279 NLLQEKLKKQLSGK--KFLVVLDDVWNE-NYNSWRALSCPFGAG-AFGSKIVVTHRNQGVAE 336 (779)
Q Consensus 279 ~~~~~~l~~~l~~k--~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTtR~~~v~~ 336 (779)
+...-.+...+-.+ +-++++|+--.. +......+...+... ..|..||++|.+.....
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22222334444455 678888987332 222333333333221 13667888888776553
No 309
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.071 Score=58.77 Aligned_cols=88 Identities=18% Similarity=0.052 Sum_probs=45.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC--HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD--VFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQ 288 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 288 (779)
...+++|+|++|+||||++..+............+..++.. .+. ..+.++.....++.... ...+...+...+.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~-~a~d~~~L~~aL~~l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVH-EADSAESLLDLLERL 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeE-ecCcHHHHHHHHHHh
Confidence 35799999999999999998887522111111233344332 221 22223322233332221 223344455544433
Q ss_pred hCCCeEEEEEeCCc
Q 040735 289 LSGKKFLVVLDDVW 302 (779)
Q Consensus 289 l~~k~~LlVlDdvw 302 (779)
. ..-+|++|...
T Consensus 427 -~-~~DLVLIDTaG 438 (559)
T PRK12727 427 -R-DYKLVLIDTAG 438 (559)
T ss_pred -c-cCCEEEecCCC
Confidence 3 34588888874
No 310
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.35 E-value=0.02 Score=59.45 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=43.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..|+|.++.++++++.+.......+.+-+++.++|+.|.||||||..+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999876554566789999999999999999998875
No 311
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.34 E-value=0.41 Score=49.82 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=28.8
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 187 VYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
++=.......+..++... +.|.|.|++|+||||+|+.+..
T Consensus 47 y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH
Confidence 333334455566666432 4689999999999999999986
No 312
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.34 E-value=0.011 Score=52.95 Aligned_cols=21 Identities=43% Similarity=0.661 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 040735 215 ISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 215 v~I~G~gGiGKTtLa~~v~~~ 235 (779)
|+|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998873
No 313
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.074 Score=50.54 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.+++|+|+.|.|||||.+.++.-
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999999863
No 314
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.33 E-value=0.063 Score=53.76 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=53.1
Q ss_pred HHHHHHHHhhhHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhc-ccCcHHHHHHHHHHHHHHHhhhhhhhhh
Q 040735 13 VELLIEKLASEGLELFTRHEKLRADFIKWKGMLEMIQAVLADAEDR-QTKDKAVKKWLDNLQNLAYDAEDVLDEL 86 (779)
Q Consensus 13 v~~l~~~l~s~~~~~~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~Wl~~lr~~ayd~eD~lD~~ 86 (779)
++-+++.|....-...-...-++..++-++.+++.+|.||+..... ............++-..||++|+++|-+
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehh
Confidence 3445555554422222222336889999999999999999987443 3333448899999999999999999986
No 315
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.32 E-value=0.062 Score=53.32 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 316
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.30 E-value=0.021 Score=58.55 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 195 EAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 195 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+++.+.... +-+.++|+.|+|||++++....
T Consensus 23 ~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhc
Confidence 45566665443 5789999999999999998875
No 317
>PTZ00301 uridine kinase; Provisional
Probab=95.29 E-value=0.022 Score=55.84 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998875
No 318
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.29 E-value=0.012 Score=57.20 Aligned_cols=81 Identities=27% Similarity=0.252 Sum_probs=42.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccC---ceEEEEeCCCCCHHHHHHHHHHHhhcC---CCCCcccHHHHHHHHHH
Q 040735 214 VISIKGLGGVGKTTLAQLVYQDDRVQRHFQ---IKSWTCVFEDFDVFRVSKLILNSIASD---QCTDKDDLNLLQEKLKK 287 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~~~~~~~~~~~~~~il~~l~~~---~~~~~~~~~~~~~~l~~ 287 (779)
||+|.|++|+||||+|+.+...... ..+. .....+. ..+.........-...... ......+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSL-DDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEG-GGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEee-cccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 6999999999999999999863211 1122 1222222 2222211111111111111 11145677788888877
Q ss_pred HhCCCeEEE
Q 040735 288 QLSGKKFLV 296 (779)
Q Consensus 288 ~l~~k~~Ll 296 (779)
...++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 767766444
No 319
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.28 E-value=0.072 Score=58.32 Aligned_cols=88 Identities=15% Similarity=0.013 Sum_probs=46.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCC-CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDF-DVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLS 290 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 290 (779)
.+++.++|++|+||||++..+.........-..+..|+....- ...+.++...+.++.+.. ...+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~-~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE-VVYDPKELAKALEQL-R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-ccCCHHhHHHHHHHh-C
Confidence 4699999999999999998876532201122334555543211 112223333333433322 233344555555443 3
Q ss_pred CCeEEEEEeCCc
Q 040735 291 GKKFLVVLDDVW 302 (779)
Q Consensus 291 ~k~~LlVlDdvw 302 (779)
..=+|++|...
T Consensus 299 -~~DlVlIDt~G 309 (424)
T PRK05703 299 -DCDVILIDTAG 309 (424)
T ss_pred -CCCEEEEeCCC
Confidence 34578889763
No 320
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.27 E-value=0.015 Score=57.34 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999873
No 321
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.27 E-value=0.15 Score=50.60 Aligned_cols=210 Identities=15% Similarity=0.164 Sum_probs=112.5
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc----cccccccCceEEEEeCCC---------
Q 040735 187 VYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD----DRVQRHFQIKSWTCVFED--------- 253 (779)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~~~~~--------- 253 (779)
+.++++.-..+..... .+...-..++|+.|.||-|.+..+.+. --.+-.-+...|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666666543 234678899999999999887655442 111112233444443322
Q ss_pred -C-----------CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeE-EEEEeCCcCCChhhhhhhcccCCCCC
Q 040735 254 -F-----------DVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKF-LVVLDDVWNENYNSWRALSCPFGAGA 320 (779)
Q Consensus 254 -~-----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~~ 320 (779)
+ .-+-+.+++++.+...... +.-..+.| ++|+-.+.+-..+.-..++...-.-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi-------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI-------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch-------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 1233445555554433210 00112345 55565554433344444544433334
Q ss_pred CCcEEEEEcCchh--hHhhhcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhh
Q 040735 321 FGSKIVVTHRNQG--VAETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGL 398 (779)
Q Consensus 321 ~gs~IivTtR~~~--v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 398 (779)
..+|+|+...+.. +...-...-.+++...+++|....+++.+-...- ..+ .+++..|+++++|.---...+...
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHHHHHHHHHH
Confidence 4677777544321 1111112246788999999999999887643322 222 588999999999885433333332
Q ss_pred hcCC----------CChhHHHHHHhhhhccc
Q 040735 399 LRGK----------DDLNDWEFVLNANIWDL 419 (779)
Q Consensus 399 l~~~----------~~~~~w~~~l~~~~~~~ 419 (779)
++-+ -..-+|+..+.+.....
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i 262 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIARVI 262 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHHHHH
Confidence 2221 12457888877655443
No 322
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.27 E-value=0.014 Score=53.49 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999885
No 323
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.25 E-value=0.082 Score=54.41 Aligned_cols=80 Identities=24% Similarity=0.137 Sum_probs=42.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccc-C-ceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHF-Q-IKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKK 287 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 287 (779)
..+.+|+|.|..|+||||+|+.+..- ..... . .+..++...-....+..... ..+.........+.+.+.+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~~-g~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKER-NLMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHHc-CCccccCCChhccHHHHHHHHHH
Confidence 45789999999999999999876541 11111 1 23333333322222222211 00101111155667777777777
Q ss_pred HhCCC
Q 040735 288 QLSGK 292 (779)
Q Consensus 288 ~l~~k 292 (779)
.-.++
T Consensus 137 Lk~g~ 141 (290)
T TIGR00554 137 LKSGK 141 (290)
T ss_pred HHCCC
Confidence 66554
No 324
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.051 Score=58.33 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...++.++|++|+||||++..+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999875
No 325
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.23 E-value=0.024 Score=52.19 Aligned_cols=23 Identities=48% Similarity=0.547 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|.|.|.+|+||||||+++..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~ 24 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER 24 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 326
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.20 E-value=0.014 Score=45.88 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+|+|.|.+|+||||+++.+...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988863
No 327
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.19 E-value=0.05 Score=57.60 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=35.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++|+...+.++.+.+..... ...-|.|.|..|+||+++|+.++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHH
Confidence 588999888888887765432 234688999999999999999875
No 328
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.15 E-value=0.017 Score=56.89 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+|+|+|++|+|||||++.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999986
No 329
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.15 E-value=0.13 Score=59.74 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=79.5
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDS------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFR 258 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 258 (779)
.++.|.+..++++.+.+.-... ....-.+-|.++|++|+|||++|+.+... ....| +.++.. +
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f-----~~is~~----~ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS----D 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE-----EEEehH----H
Confidence 3567777666666554432110 00112345899999999999999999873 22222 222211 1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC----------hhhhhh----hcccCCC--CCCC
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN----------YNSWRA----LSCPFGA--GAFG 322 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~----l~~~l~~--~~~g 322 (779)
+. ... .......+...+.......+++|++|+++.-. ...+.. +...+.. ...+
T Consensus 221 ~~----~~~------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 221 FV----EMF------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred hH----Hhh------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 10 100 01111223333333344578999999984310 011111 1111111 1234
Q ss_pred cEEEEEcCchhhHhhh-----cccccccCCCCChHHHHHHHHHhh
Q 040735 323 SKIVVTHRNQGVAETM-----RAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 323 s~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
.-+|.||...+..... .-...+.+...+.++-.+++..+.
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 4566677765533211 123567788788777778777665
No 330
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.12 E-value=1.1 Score=46.47 Aligned_cols=156 Identities=11% Similarity=-0.004 Sum_probs=86.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc---c-----cccccCceEEEEe-CCCCCHHHHHHHHHHHhhcCCCCCcccHHHHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDD---R-----VQRHFQIKSWTCV-FEDFDVFRVSKLILNSIASDQCTDKDDLNLLQ 282 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~---~-----~~~~F~~~~wv~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~ 282 (779)
..+..++|..|.||+++|..+.+.. . ...|-+...++.. .......++ +.+.+.+.....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~~---------- 86 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSSF---------- 86 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCCc----------
Confidence 3566799999999999999886531 0 0111112222221 111111111 122222211110
Q ss_pred HHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEc-CchhhHhh-hcccccccCCCCChHHHHHHHHH
Q 040735 283 EKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTH-RNQGVAET-MRAVSTKTLKELSDDDCLRVLIQ 360 (779)
Q Consensus 283 ~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~ 360 (779)
-.+++-++|+|++..........+...+-.....+.+|++| ....+..+ ......+++.+++.++....+..
T Consensus 87 ------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 87 ------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred ------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 01477789999986655556667777776655666666655 44444443 33457899999999999887765
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 040735 361 HSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 394 (779)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 394 (779)
.. .++ +.+..++...+|.--|+..
T Consensus 161 ~~-------~~~---~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 161 KN-------KEK---EYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred cC-------CCh---hHHHHHHHHcCCHHHHHHH
Confidence 31 111 3355566666663344444
No 331
>PTZ00035 Rad51 protein; Provisional
Probab=95.11 E-value=0.16 Score=53.80 Aligned_cols=57 Identities=16% Similarity=0.032 Sum_probs=38.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccc----cccCceEEEEeCCCCCHHHHHHHHHHHhh
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQ----RHFQIKSWTCVFEDFDVFRVSKLILNSIA 268 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 268 (779)
.-.++.|+|.+|+|||+|+..++-..... ..=..++|++....+++..+ ..+.+.++
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 45799999999999999998886432211 11124578888887777664 34444443
No 332
>PRK10867 signal recognition particle protein; Provisional
Probab=95.09 E-value=0.067 Score=58.31 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+.+|.++|++|+||||.+..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877654
No 333
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.09 E-value=0.11 Score=49.51 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 5999999999999999999886
No 334
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.08 E-value=0.089 Score=54.69 Aligned_cols=85 Identities=24% Similarity=0.155 Sum_probs=51.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHH
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCT----DKDDLNLLQEKL 285 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 285 (779)
+.-+++-|+|+.|+||||||.++.. ..+..-..++|++....+++... ++++..... .+...++..+.+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHH
Confidence 3457999999999999999998876 33334456789999888776433 333332211 233445555666
Q ss_pred HHHhC-CCeEEEEEeCC
Q 040735 286 KKQLS-GKKFLVVLDDV 301 (779)
Q Consensus 286 ~~~l~-~k~~LlVlDdv 301 (779)
...++ +.--++|+|-|
T Consensus 124 e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHTTSESEEEEE-C
T ss_pred HHHhhcccccEEEEecC
Confidence 66664 34458899998
No 335
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.07 E-value=0.1 Score=52.28 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
++..+++|.|++|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998886
No 336
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.07 E-value=0.0012 Score=62.98 Aligned_cols=89 Identities=12% Similarity=0.064 Sum_probs=67.1
Q ss_pred ccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccc
Q 040735 562 KSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESIN 641 (779)
Q Consensus 562 ~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~ 641 (779)
..+..+++.+.|.++.+.. .++-..+..+..|..|+++.|.+..+|..++.+..++.+++..|+.+.+|.+++
T Consensus 36 ~ei~~~kr~tvld~~s~r~-------vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRL-------VNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred hhhhccceeeeehhhhhHH-------HhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc
Confidence 3455666677776665541 122223335566788899999999999999999999999999999999999999
Q ss_pred cccccceeeccCCcch
Q 040735 642 SLYNLHTILLEDCRRL 657 (779)
Q Consensus 642 ~L~~L~~L~l~~~~~~ 657 (779)
.+++++++++.+|...
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 9999999999988543
No 337
>PRK14974 cell division protein FtsY; Provisional
Probab=95.07 E-value=0.13 Score=54.29 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=46.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC--HHHHHHHHHHHhhcCCCC--CcccHHH-HHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD--VFRVSKLILNSIASDQCT--DKDDLNL-LQEKL 285 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~--~~~~~~~-~~~~l 285 (779)
++.+|.++|++|+||||++..++.... ...+. ++.+. .+.+. ..+-++.....++.+... ...+... ..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGFS-VVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCe-EEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998887775322 11232 22333 22222 223345555555543221 1222222 22333
Q ss_pred HHHhCCCeEEEEEeCCcCC
Q 040735 286 KKQLSGKKFLVVLDDVWNE 304 (779)
Q Consensus 286 ~~~l~~k~~LlVlDdvw~~ 304 (779)
...-....=++++|-....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 3222222238889988543
No 338
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.04 E-value=0.17 Score=49.69 Aligned_cols=61 Identities=8% Similarity=0.091 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEeCCcC-CChhhhhhhcccCCCC--CCCcEEEEEcCchhhHhhhc
Q 040735 279 NLLQEKLKKQLSGKKFLVVLDDVWN-ENYNSWRALSCPFGAG--AFGSKIVVTHRNQGVAETMR 339 (779)
Q Consensus 279 ~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~v~~~~~ 339 (779)
++..-.+.+.|-..+-+|+-|+=-. -+...-+.+...+... ..|..||+.|-+..+|..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 3444556667777888888887421 1222223333333322 34778999999999988654
No 339
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.04 E-value=0.072 Score=50.75 Aligned_cols=21 Identities=52% Similarity=0.597 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999998876
No 340
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.04 E-value=0.16 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.+++|+|+.|.|||||++.+..-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 341
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.15 Score=57.67 Aligned_cols=101 Identities=23% Similarity=0.199 Sum_probs=61.6
Q ss_pred CCCCccccchhhHHHHHHHHhcCC------CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC
Q 040735 182 VNEAEVYGREKDKEAIVELLLRDD------SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD 255 (779)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 255 (779)
+.-.++=|-++.+.+|.+-+.-+- +.+-.+..=|.++|++|.|||-+|++|+..-. ..|++|-.+
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP-- 739 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP-- 739 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH--
Confidence 334556678888888888764310 00112345678999999999999999997322 234666554
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcC
Q 040735 256 VFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWN 303 (779)
Q Consensus 256 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~ 303 (779)
+++...-+ ...+.+.+...+.=..++|+|+||.+.+
T Consensus 740 ------ELLNMYVG------qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ------ELLNMYVG------QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ------HHHHHHhc------chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 22222211 1223344444444456899999999954
No 342
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.01 E-value=0.19 Score=51.86 Aligned_cols=52 Identities=25% Similarity=0.195 Sum_probs=34.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHh
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSI 267 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 267 (779)
.++.|.|.+|+||||++.++..... ..+=..++|++... +..++...+...+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 5888999999999999998876322 11124567887655 3455555555443
No 343
>PRK06762 hypothetical protein; Provisional
Probab=95.00 E-value=0.019 Score=54.34 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+.+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999886
No 344
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.98 E-value=0.085 Score=62.17 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..++|+...+..+.+.+..... ....|.|+|..|+|||++|+.++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHh
Confidence 3689999888888776653321 2357889999999999999999874
No 345
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.95 E-value=0.15 Score=54.60 Aligned_cols=83 Identities=23% Similarity=0.184 Sum_probs=46.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCT----DKDDLNLLQEKLK 286 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 286 (779)
.-.++.|.|.+|+|||||+.+++... ...-..++|++..+. ..++ +.-+..++..... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 34799999999999999999887632 222245667765433 3332 2223344332111 1223444444432
Q ss_pred HHhCCCeEEEEEeCC
Q 040735 287 KQLSGKKFLVVLDDV 301 (779)
Q Consensus 287 ~~l~~k~~LlVlDdv 301 (779)
..+.-++|+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235667888887
No 346
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.95 E-value=0.0084 Score=58.82 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=17.6
Q ss_pred cccccceeeccCCcchhhchhh----hcCccccceeecCCCc
Q 040735 642 SLYNLHTILLEDCRRLKKLCKN----MGNLMKLHHLRNPNVH 679 (779)
Q Consensus 642 ~L~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~L~l~~~~ 679 (779)
++++|++.+||.|..-...|+. |++-+.|.||.+++|.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 4455555555555333333332 3344455555555554
No 347
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.95 E-value=0.13 Score=52.75 Aligned_cols=90 Identities=17% Similarity=0.119 Sum_probs=47.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCH--HHHHHHHHHHhhcCCC--CCcccHHH-HHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDV--FRVSKLILNSIASDQC--TDKDDLNL-LQEKL 285 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~--~~~~~~~~-~~~~l 285 (779)
+.+++.++|++|+||||++..+.... ...-..+.+++.. .+.. .+-+....+..+.+.. ....+... ....+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 46899999999999999998887532 2221234445433 2322 2333334444442211 01222222 23344
Q ss_pred HHHhCCCeEEEEEeCCcC
Q 040735 286 KKQLSGKKFLVVLDDVWN 303 (779)
Q Consensus 286 ~~~l~~k~~LlVlDdvw~ 303 (779)
........=++++|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 443334445788887743
No 348
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.91 E-value=0.062 Score=58.33 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=47.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCC-----CCCcccHH-----HHH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQ-----CTDKDDLN-----LLQ 282 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~-----~~~ 282 (779)
..++|+|..|+|||||++.+..... ....++++.-.+..++.++....+....... ..+..... ...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5789999999999999998876321 2223444433344455554444444321110 00111111 111
Q ss_pred HHHHHHh--CCCeEEEEEeCC
Q 040735 283 EKLKKQL--SGKKFLVVLDDV 301 (779)
Q Consensus 283 ~~l~~~l--~~k~~LlVlDdv 301 (779)
-.+.+++ +++.+|+++||+
T Consensus 243 ~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHcCCCEEEeccch
Confidence 2223333 589999999999
No 349
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.86 E-value=0.18 Score=50.78 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=33.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKL 262 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 262 (779)
.-.++.|.|.+|+|||++|.++.... . ..-..++||+..+ ++.++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 45899999999999999998875421 1 2335678887755 44444443
No 350
>PRK06547 hypothetical protein; Provisional
Probab=94.85 E-value=0.025 Score=53.59 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999763
No 351
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.83 E-value=0.13 Score=48.35 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=60.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCce--EEEEeCCCCCHHHHHHHHHHHhh-----cC--C--CCCcc---cH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIK--SWTCVFEDFDVFRVSKLILNSIA-----SD--Q--CTDKD---DL 278 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~--~wv~~~~~~~~~~~~~~il~~l~-----~~--~--~~~~~---~~ 278 (779)
..|-|++..|.||||.|-.+.-.. ....+.+. -|+--.........+..+ .+. .. . ..... ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHH
Confidence 578888889999999997665421 11122211 122222122333333332 111 00 0 00011 12
Q ss_pred HHHHHHHHHHhCCCeE-EEEEeCCcC---CChhhhhhhcccCCCCCCCcEEEEEcCch
Q 040735 279 NLLQEKLKKQLSGKKF-LVVLDDVWN---ENYNSWRALSCPFGAGAFGSKIVVTHRNQ 332 (779)
Q Consensus 279 ~~~~~~l~~~l~~k~~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 332 (779)
....+..++.+...+| |+|||.+-. ....+.+++...+.....+..+|+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2233444555554444 999999821 12234445666665566678999999986
No 352
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.81 E-value=0.22 Score=51.53 Aligned_cols=133 Identities=23% Similarity=0.236 Sum_probs=68.6
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc-cccccccCceE----EEEeCCCCC-----HH
Q 040735 188 YGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD-DRVQRHFQIKS----WTCVFEDFD-----VF 257 (779)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~----wv~~~~~~~-----~~ 257 (779)
-+|..+-.--.++|+.+ .+..|.+.|.+|.|||.||-+..-. ...++.|..++ -+.+.+... .+
T Consensus 227 ~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 34556666666777654 4689999999999999999654321 11223333222 122222211 11
Q ss_pred -------HHHHHHHHHhhcCCCCCcccHHHHHHHH---------HHHhCCC---eEEEEEeCCcCCChhhhhhhcccCCC
Q 040735 258 -------RVSKLILNSIASDQCTDKDDLNLLQEKL---------KKQLSGK---KFLVVLDDVWNENYNSWRALSCPFGA 318 (779)
Q Consensus 258 -------~~~~~il~~l~~~~~~~~~~~~~~~~~l---------~~~l~~k---~~LlVlDdvw~~~~~~~~~l~~~l~~ 318 (779)
.-.-+=++.+....... .+.+...+ ..+.+|+ +-++|+|...+-.+.+... .+..
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~---~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikT---iltR 374 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPG---DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKT---ILTR 374 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccc---hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHH---HHHh
Confidence 11122233333322111 11222211 1222343 4589999997755444433 4445
Q ss_pred CCCCcEEEEEcCch
Q 040735 319 GAFGSKIVVTHRNQ 332 (779)
Q Consensus 319 ~~~gs~IivTtR~~ 332 (779)
.+.||||+.|--..
T Consensus 375 ~G~GsKIVl~gd~a 388 (436)
T COG1875 375 AGEGSKIVLTGDPA 388 (436)
T ss_pred ccCCCEEEEcCCHH
Confidence 67899999887543
No 353
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.78 E-value=0.016 Score=50.15 Aligned_cols=21 Identities=48% Similarity=0.630 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 040735 215 ISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 215 v~I~G~gGiGKTtLa~~v~~~ 235 (779)
|.|+|++|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999998763
No 354
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.78 E-value=0.24 Score=47.57 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.|++|+|++|+|||||.+.+..
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 5999999999999999998864
No 355
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.77 E-value=0.1 Score=49.66 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|.|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 356
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.22 Score=48.33 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCcCC-ChhhhhhhcccCCC-CCCCcEEEEEcCchhhHhhhcccccc
Q 040735 280 LLQEKLKKQLSGKKFLVVLDDVWNE-NYNSWRALSCPFGA-GAFGSKIVVTHRNQGVAETMRAVSTK 344 (779)
Q Consensus 280 ~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~IivTtR~~~v~~~~~~~~~~ 344 (779)
.....+.+.+-=++-+.|||...+- +.+....+...+.. ...|+.+++.|-.+.++....++.++
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3344455555556789999998542 22233322222211 12366677778888888877655443
No 357
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.75 E-value=0.11 Score=52.59 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=51.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccc--ccccCceEEEEeCCCCC-HHHHHHHHHHHhhcCC------CCCcccHH----
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRV--QRHFQIKSWTCVFEDFD-VFRVSKLILNSIASDQ------CTDKDDLN---- 279 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~~------~~~~~~~~---- 279 (779)
.-++|.|..|+|||+|+..+.++..+ +.+-+.++++-+.+... ..++..++...=.... ..+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 35799999999999999998875331 12245678888876654 4445554444211100 00111111
Q ss_pred -HHHHHHHHHh---CCCeEEEEEeCC
Q 040735 280 -LLQEKLKKQL---SGKKFLVVLDDV 301 (779)
Q Consensus 280 -~~~~~l~~~l---~~k~~LlVlDdv 301 (779)
...-.+.+++ .++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1122234444 378999999999
No 358
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.73 E-value=0.097 Score=59.21 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=38.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
...++|+...++++.+.+..... ....|.|.|..|+|||++|+.++..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 34689999999888888865432 3357889999999999999999874
No 359
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.63 Score=45.40 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=81.4
Q ss_pred cccc-hhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHH
Q 040735 187 VYGR-EKDKEAIVELLLRDDS-------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFR 258 (779)
Q Consensus 187 ~vGr-~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 258 (779)
++|. ++.+.+|.+.+.-+-. -+-.+++-+.++|++|.|||-||++|+++ ...-|+.|+.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 5554 6666666665532110 12345677899999999999999999963 23445666553 2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC--------------hhhhhhhcccCCCC--CCC
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN--------------YNSWRALSCPFGAG--AFG 322 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~--------------~~~~~~l~~~l~~~--~~g 322 (779)
+.+..+ +. +..-..++.-.-+ ..-+-+|+.|.+.+-. +...-++...+... .+.
T Consensus 217 lvqk~i---ge----gsrmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 217 LVQKYI---GE----GSRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHHHHh---hh----hHHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 221111 11 1111111111112 3457788888874310 00111222222221 245
Q ss_pred cEEEEEcCchhhHhhh-----cccccccCCCCChHHHHHHHHHhh
Q 040735 323 SKIVVTHRNQGVAETM-----RAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 323 s~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
-+||+.|..-++.... .-+..++.++-+.+.-.++++-+.
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 6788877655443221 223567788888777777776554
No 360
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.71 E-value=0.15 Score=53.99 Aligned_cols=90 Identities=14% Similarity=0.031 Sum_probs=52.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCC-CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDF-DVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL 289 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 289 (779)
+.+++.|+|+.|+||||++..+..... ..-..+.+++..... ...+-++...+.++.+.. ...+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~--~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL--KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHHH
Confidence 468999999999999999988875321 111234555553221 224445555555554332 2345566655554432
Q ss_pred C-CCeEEEEEeCCcC
Q 040735 290 S-GKKFLVVLDDVWN 303 (779)
Q Consensus 290 ~-~k~~LlVlDdvw~ 303 (779)
. +..=+|++|-...
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3345788888744
No 361
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.71 E-value=0.17 Score=54.43 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=50.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc--ccCceEEEEeCCCCCH--HHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQR--HFQIKSWTCVFEDFDV--FRVSKLILNSIASDQCTDKDDLNLLQEKLK 286 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~~l~ 286 (779)
..++|.++|+.|+||||.+..+........ +=..+..++.. .+.. ..-++...+.++.+.. .....+.+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHH
Confidence 357999999999999999988875322211 11233344433 3322 2235555555554432 3334455555554
Q ss_pred HHhCCCeEEEEEeCCcC
Q 040735 287 KQLSGKKFLVVLDDVWN 303 (779)
Q Consensus 287 ~~l~~k~~LlVlDdvw~ 303 (779)
+. .+.-++++|-...
T Consensus 251 ~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 251 QS--KDFDLVLVDTIGK 265 (388)
T ss_pred Hh--CCCCEEEEcCCCC
Confidence 43 3456888898854
No 362
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.70 E-value=0.15 Score=55.25 Aligned_cols=51 Identities=29% Similarity=0.339 Sum_probs=35.6
Q ss_pred CCccccchhhHHHHHHHHhc------C--CCCCC----CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 184 EAEVYGREKDKEAIVELLLR------D--DSRAD----DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~------~--~~~~~----~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+..++|.++.++.+...+.. . ....+ -....+.++|++|+|||++|+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 34689999999888765521 0 00000 1135789999999999999999985
No 363
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.65 E-value=0.028 Score=54.38 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999875
No 364
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.62 E-value=0.1 Score=55.78 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 185 AEVYGREKDKEAIVELLLRD--------DSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..++|.++.++.+.-.+... .-.....++-|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889988888887666532 0001123467899999999999999999873
No 365
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.046 Score=49.68 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+|.|-|++|+||||+|+.+.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6899999999999999999874
No 366
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.58 Score=46.95 Aligned_cols=96 Identities=21% Similarity=0.250 Sum_probs=58.5
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDS------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFR 258 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 258 (779)
.++-|-+..++.|.+...-+-. ......+-|.++|++|.||+-||++|..... .. |++|+..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--ST-----FFSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--ST-----FFSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cc-----eEEeehH-----
Confidence 4567888888887776532110 1123468899999999999999999997322 22 3444432
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHh-CCCeEEEEEeCCc
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQEKLKKQL-SGKKFLVVLDDVW 302 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw 302 (779)
+++....+ ..+.++..|.+.. .+|+-+|++|.+.
T Consensus 201 ---DLvSKWmG-------ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 ---DLVSKWMG-------ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred ---HHHHHHhc-------cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 12222111 1234444454444 4689999999984
No 367
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.59 E-value=0.073 Score=52.25 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=48.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCC-CHHHHHHHHHHHhhc-------CCCCCcccH------
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDF-DVFRVSKLILNSIAS-------DQCTDKDDL------ 278 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~-------~~~~~~~~~------ 278 (779)
.-++|.|.+|+|||+|+.++.+... -+..+++.+.+.. ...++..++...-.. ....+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4678999999999999999987431 2334777776553 344444444332000 011011101
Q ss_pred --HHHHHHHHHHhCCCeEEEEEeCC
Q 040735 279 --NLLQEKLKKQLSGKKFLVVLDDV 301 (779)
Q Consensus 279 --~~~~~~l~~~l~~k~~LlVlDdv 301 (779)
-...+.++. +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 112233333 799999999998
No 368
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.59 E-value=0.069 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+.|.|.|.||+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999998863
No 369
>PRK03839 putative kinase; Provisional
Probab=94.58 E-value=0.025 Score=54.30 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 370
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.53 E-value=0.025 Score=53.99 Aligned_cols=25 Identities=44% Similarity=0.519 Sum_probs=22.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDD 236 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~ 236 (779)
..+|+|-||-|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 3689999999999999999998743
No 371
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.53 E-value=0.052 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999998863
No 372
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.52 E-value=0.84 Score=46.22 Aligned_cols=120 Identities=15% Similarity=0.118 Sum_probs=76.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
+.|+|-... .++..++.... ..-+.+.|+|+.|+|||+-++.+++. .+....+..+..++...+...+.
T Consensus 72 ~~~l~tkt~-r~~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~ 140 (297)
T COG2842 72 PDFLETKTV-RRIFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIIC 140 (297)
T ss_pred ccccccchh-HhHhhhhhhhh----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHH
Confidence 356665442 33444443222 12248889999999999999999872 23334455666666666666666
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCC
Q 040735 265 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGA 318 (779)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~ 318 (779)
....... ..........+...+.+..-+++.|....-.....+.++.....
T Consensus 141 ~~~~~~~---~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 141 AAAFGAT---DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred HHHhccc---chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 6665543 33445566666777788889999999866555666666554433
No 373
>PRK04040 adenylate kinase; Provisional
Probab=94.49 E-value=0.029 Score=54.05 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999886
No 374
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.48 E-value=0.15 Score=55.79 Aligned_cols=88 Identities=19% Similarity=0.206 Sum_probs=51.6
Q ss_pred EEEEEEcCCCCcHHHHH-HHHhcccccc-----cccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC-----Cccc--H-
Q 040735 213 SVISIKGLGGVGKTTLA-QLVYQDDRVQ-----RHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCT-----DKDD--L- 278 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-----~~~~--~- 278 (779)
.-++|.|..|+|||+|| ..+.+...+. ++-..++++.+.+......-+.+.++.-+.-... ...+ .
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 45789999999999997 5566643221 2334678888887765444344444443311100 1111 1
Q ss_pred --------HHHHHHHHHHhCCCeEEEEEeCCc
Q 040735 279 --------NLLQEKLKKQLSGKKFLVVLDDVW 302 (779)
Q Consensus 279 --------~~~~~~l~~~l~~k~~LlVlDdvw 302 (779)
-...+.+++ +++.+|+|+||+-
T Consensus 270 r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLT 299 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMN--RGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCEEEEEcCch
Confidence 122333332 5899999999993
No 375
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.47 E-value=0.2 Score=47.67 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.+++|+|+.|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 376
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.21 Score=48.99 Aligned_cols=55 Identities=25% Similarity=0.205 Sum_probs=38.2
Q ss_pred ccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccc
Q 040735 186 EVYGREKDKEAIVELLLRDDS-------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHF 242 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 242 (779)
++=|-.+.++++.+...-+-- -+-..++-|.++|++|.|||-+|++|.| +....|
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 455677788887776532210 0223457788999999999999999998 554445
No 377
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.42 E-value=0.062 Score=53.30 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=35.9
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHH
Q 040735 193 DKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRV 259 (779)
Q Consensus 193 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 259 (779)
+..++.+.+.... ++..+|+|.|+||+|||||...+....+-.++=-.++=|+-+.+++--.+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 3445566665432 35689999999999999999988764433333233444555555554333
No 378
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.39 E-value=0.2 Score=51.11 Aligned_cols=116 Identities=17% Similarity=0.053 Sum_probs=58.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhc-CCCC-----Cc-ccHHHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIAS-DQCT-----DK-DDLNLLQE 283 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~-~~~~-----~~-~~~~~~~~ 283 (779)
+..-++|+|+.|+|||||.+.+..... .....+++.-.. ....+...++...... +... +. +.... ..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~ 184 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK-AE 184 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEE-eecchhHHHHHHHhcccccccccccccccccchH-HH
Confidence 346899999999999999999987322 222233321110 0000111222222111 0000 00 11111 11
Q ss_pred HHHHHh-CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhhHh
Q 040735 284 KLKKQL-SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGVAE 336 (779)
Q Consensus 284 ~l~~~l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~ 336 (779)
-+...+ ...+-++++|.+.. .+.+..+...+. .|..+|+||-+..+..
T Consensus 185 ~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 222222 25788999999843 344555544442 4778999998765543
No 379
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.37 E-value=0.24 Score=50.54 Aligned_cols=89 Identities=13% Similarity=0.083 Sum_probs=46.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCC-CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC-
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDF-DVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLS- 290 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~- 290 (779)
.+++++|.+|+||||++..+.... ...=..+.+++..... ....-++...+.++.+.. ...+...+.+.+...-.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE-ecCCHHHHHHHHHHHHhc
Confidence 689999999999999998876522 1111233445443221 122222333333332221 22344555554443322
Q ss_pred CCeEEEEEeCCcCC
Q 040735 291 GKKFLVVLDDVWNE 304 (779)
Q Consensus 291 ~k~~LlVlDdvw~~ 304 (779)
++.=++++|..-..
T Consensus 153 ~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 153 ARVDYILIDTAGKN 166 (270)
T ss_pred CCCCEEEEECCCCC
Confidence 24468888988543
No 380
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.34 E-value=0.075 Score=50.88 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998863
No 381
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.33 E-value=0.11 Score=60.31 Aligned_cols=86 Identities=22% Similarity=0.142 Sum_probs=56.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHH
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCT----DKDDLNLLQEKL 285 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 285 (779)
+.-+++-|.|++|+|||||+.+++.. ....=..++|++..+.++.. .+++++..... .....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 34588899999999999999876642 22222456888887777743 45555543211 233445555666
Q ss_pred HHHhC-CCeEEEEEeCCc
Q 040735 286 KKQLS-GKKFLVVLDDVW 302 (779)
Q Consensus 286 ~~~l~-~k~~LlVlDdvw 302 (779)
...+. ++.-|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 66554 466799999984
No 382
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.31 E-value=0.045 Score=51.53 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999998863
No 383
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.31 E-value=0.092 Score=55.84 Aligned_cols=63 Identities=24% Similarity=0.159 Sum_probs=46.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
.++|+++.+..+...+.... -+.+.|++|+|||+||+.+.. ..... ..+|.+.......+++-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~--~l~~~---~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALAR--ALGLP---FVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHH--HhCCC---eEEEecCCCCCHHHhcC
Confidence 37888888888877776543 588999999999999999987 23322 35666777766666543
No 384
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.30 E-value=0.073 Score=51.31 Aligned_cols=42 Identities=26% Similarity=0.342 Sum_probs=31.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|.+..+..+.-...+. .-+.++|++|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--------h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--------HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC--------CCeEEECCCCCCHHHHHHHHHH
Confidence 46889888888777766532 4688999999999999998854
No 385
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.30 E-value=0.024 Score=49.82 Aligned_cols=27 Identities=37% Similarity=0.631 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcccccccccC
Q 040735 215 ISIKGLGGVGKTTLAQLVYQDDRVQRHFQ 243 (779)
Q Consensus 215 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 243 (779)
|.|+|.+|+|||++|+.+.. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67899999999999999987 4555564
No 386
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.30 E-value=0.46 Score=53.42 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=35.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.++|+...+.++...+.... .....|.|.|.+|+|||++|+.++..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58898888887777664322 12356889999999999999998874
No 387
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.29 E-value=0.1 Score=56.69 Aligned_cols=50 Identities=28% Similarity=0.270 Sum_probs=34.8
Q ss_pred CccccchhhHHHHHHHHhc----CCC------CCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 185 AEVYGREKDKEAIVELLLR----DDS------RADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~----~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..++|.+..++.+...+.. ... ...-..+.+.++|++|+|||++|+.+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4589999988887655421 000 0011235688999999999999999985
No 388
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.27 E-value=0.078 Score=46.55 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=33.1
Q ss_pred ccccchhhHHHHHHHHhcCC-CCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 186 EVYGREKDKEAIVELLLRDD-SRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.++|..-..+.+.+.+.+-- .....++-|++.+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 35565555555555443211 113456789999999999999999887764
No 389
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.25 E-value=0.047 Score=54.32 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 040735 215 ISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 215 v~I~G~gGiGKTtLa~~v~~ 234 (779)
|.|.|++|+||||+|+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999876
No 390
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.23 E-value=0.12 Score=49.24 Aligned_cols=119 Identities=17% Similarity=0.078 Sum_probs=60.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCC---CCCHHHHHHHH--HHH--hhcC--CC--CCcc---c
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFE---DFDVFRVSKLI--LNS--IASD--QC--TDKD---D 277 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~i--l~~--l~~~--~~--~~~~---~ 277 (779)
...|-|+|..|-||||.|..+.- +...+=..+..+..-. .......+..+ +.. .+.. .. .... .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 36899999999999999976654 2111111122222222 22333333221 000 0000 00 0011 1
Q ss_pred HHHHHHHHHHHhCCCe-EEEEEeCCcC---CChhhhhhhcccCCCCCCCcEEEEEcCch
Q 040735 278 LNLLQEKLKKQLSGKK-FLVVLDDVWN---ENYNSWRALSCPFGAGAFGSKIVVTHRNQ 332 (779)
Q Consensus 278 ~~~~~~~l~~~l~~k~-~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 332 (779)
.....+..++.+...+ =|+|||.+-. ....+.+++...+.....+..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1223344455554444 4999999822 22234556666666666678999999975
No 391
>PRK00625 shikimate kinase; Provisional
Probab=94.23 E-value=0.032 Score=52.88 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999976
No 392
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.22 E-value=0.07 Score=47.79 Aligned_cols=40 Identities=33% Similarity=0.278 Sum_probs=28.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 192 KDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 192 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
++.+++.+.|...- ..-.+|.+.|.-|+||||+++.++..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555554321 12358999999999999999999874
No 393
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.20 E-value=0.059 Score=57.51 Aligned_cols=102 Identities=21% Similarity=0.224 Sum_probs=55.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccc----ccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRV----QRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLK 286 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~ 286 (779)
.++=+-|||..|.|||.|...+|+...+ +-||. +...++-+.+..-.. ....+.. +.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~-~~~~l~~----va 121 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRG-QDDPLPQ----VA 121 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhC-CCccHHH----HH
Confidence 4678899999999999999999986433 22332 223333333332211 2233333 33
Q ss_pred HHhCCCeEEEEEeCCcCCChhhhhhhcccCCC-CCCCcEEEEEcCch
Q 040735 287 KQLSGKKFLVVLDDVWNENYNSWRALSCPFGA-GAFGSKIVVTHRNQ 332 (779)
Q Consensus 287 ~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~IivTtR~~ 332 (779)
+.+.++..||.||.+.-.+..+-.-+...|.. ...|. +||+|.|.
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 44456677999999855444332222222221 12355 55555554
No 394
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.14 E-value=0.32 Score=56.48 Aligned_cols=87 Identities=21% Similarity=0.161 Sum_probs=48.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC--HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD--VFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL 289 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 289 (779)
.+++.++|+.|+||||++..+............+..++.. .+. ..+-++...+.++.+.. ...+..++.+.+.+ +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~-~~~~~~~l~~al~~-~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH-AVKDAADLRFALAA-L 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc-ccCCHHHHHHHHHH-h
Confidence 4799999999999999998887633211111233344332 222 33445555555554433 33355555555543 3
Q ss_pred CCCeEEEEEeCCc
Q 040735 290 SGKKFLVVLDDVW 302 (779)
Q Consensus 290 ~~k~~LlVlDdvw 302 (779)
+++ =+|++|=.-
T Consensus 262 ~~~-D~VLIDTAG 273 (767)
T PRK14723 262 GDK-HLVLIDTVG 273 (767)
T ss_pred cCC-CEEEEeCCC
Confidence 443 366677664
No 395
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.14 E-value=0.03 Score=54.70 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+|+|.|++|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 396
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.13 E-value=0.063 Score=47.98 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=39.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSG 291 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 291 (779)
..-|.|.|-||+||||++.++..... | -|+++++-.....+... ....-.....+.+.+.+.|...+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~----~---~~i~isd~vkEn~l~~g----yDE~y~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG----L---EYIEISDLVKENNLYEG----YDEEYKCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC----C---ceEehhhHHhhhcchhc----ccccccCccccHHHHHHHHHHHHhc
Confidence 34578999999999999999885211 1 35555543222222211 1111111345666677777666654
Q ss_pred C
Q 040735 292 K 292 (779)
Q Consensus 292 k 292 (779)
.
T Consensus 76 G 76 (176)
T KOG3347|consen 76 G 76 (176)
T ss_pred C
Confidence 3
No 397
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.12 E-value=0.26 Score=53.52 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999987765
No 398
>PHA00729 NTP-binding motif containing protein
Probab=94.11 E-value=0.045 Score=53.71 Aligned_cols=24 Identities=46% Similarity=0.498 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+...|.|.|.+|+||||||..+.+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999887
No 399
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.11 E-value=0.038 Score=53.01 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.++.|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 400
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.09 E-value=0.05 Score=51.95 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
...+|+|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999873
No 401
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.06 E-value=0.044 Score=51.87 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..++.+.|+.|+|||.||+.+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~ 25 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE 25 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH
Confidence 46888999999999999999876
No 402
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.06 E-value=0.032 Score=53.73 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 403
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.03 E-value=0.26 Score=53.51 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+.+|.++|++|+||||++..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999988865
No 404
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.03 E-value=0.14 Score=54.94 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 185 AEVYGREKDKEAIVELLLRD--------DSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..++|.+..++.+..++... ..........|.++|++|+|||+||+.+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 45889999999888887531 000111246789999999999999999876
No 405
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.03 E-value=0.041 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...|.|+|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 406
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.01 E-value=0.076 Score=53.46 Aligned_cols=63 Identities=21% Similarity=0.149 Sum_probs=42.4
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHH
Q 040735 196 AIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKL 262 (779)
Q Consensus 196 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 262 (779)
+++..+... .++..+|+|.|.||+|||||...+.....-..+--.++=|+-|.+++--.++-+
T Consensus 39 ~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 39 ELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 444444433 246689999999999999999988775444444445566666777765555443
No 407
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.00 E-value=0.14 Score=53.99 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 040735 215 ISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 215 v~I~G~gGiGKTtLa~~v~~~ 235 (779)
+.+.|++|+||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999998863
No 408
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.2 Score=52.76 Aligned_cols=97 Identities=24% Similarity=0.197 Sum_probs=57.8
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCC
Q 040735 193 DKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQC 272 (779)
Q Consensus 193 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 272 (779)
...++-..|-..- -.-.+|.|-|-+|||||||.-++..+ ....- .+++|+-.+. ..++ +--...++....
T Consensus 78 g~~EldRVLGGG~----V~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~ 147 (456)
T COG1066 78 GIEELDRVLGGGL----VPGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEES--LQQI-KLRADRLGLPTN 147 (456)
T ss_pred ChHHHHhhhcCCc----ccccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcC--HHHH-HHHHHHhCCCcc
Confidence 3445555564322 13478999999999999999999874 33332 5566654443 3332 223445553332
Q ss_pred C----CcccHHHHHHHHHHHhCCCeEEEEEeCCc
Q 040735 273 T----DKDDLNLLQEKLKKQLSGKKFLVVLDDVW 302 (779)
Q Consensus 273 ~----~~~~~~~~~~~l~~~l~~k~~LlVlDdvw 302 (779)
. ...+.+...+.+.+ .++-++|+|-+.
T Consensus 148 ~l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred ceEEehhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 1 23445555555444 588899999983
No 409
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.98 E-value=0.29 Score=51.30 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.+++|+|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999753
No 410
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.97 E-value=0.035 Score=53.23 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 411
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.97 E-value=0.18 Score=49.25 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 59999999999999999998774
No 412
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.94 E-value=0.033 Score=30.18 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=4.0
Q ss_pred cceEecccccccc
Q 040735 623 LRFLNLSRTNIQI 635 (779)
Q Consensus 623 L~~L~l~~n~i~~ 635 (779)
|+.|+|++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3344444443333
No 413
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.91 E-value=0.19 Score=51.33 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=29.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCC
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFE 252 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 252 (779)
.-+++.|.|++|+|||++|.++..... ..=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence 457999999999999999998765321 1223667788764
No 414
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.91 E-value=0.048 Score=53.69 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=48.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceE-------EEEeCCCCCHHHH--HHHHHHHhhcCCCCCc----
Q 040735 209 DDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKS-------WTCVFEDFDVFRV--SKLILNSIASDQCTDK---- 275 (779)
Q Consensus 209 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-------wv~~~~~~~~~~~--~~~il~~l~~~~~~~~---- 275 (779)
..++..|.++||+|.||||..+.++.+..-+..-+.++ -+......++++. .++.+++.......+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 34567888999999999999999987533222211111 1112233455554 3566777665544322
Q ss_pred ----ccHHHHHHHHHHHhCCCeEE
Q 040735 276 ----DDLNLLQEKLKKQLSGKKFL 295 (779)
Q Consensus 276 ----~~~~~~~~~l~~~l~~k~~L 295 (779)
...++....+.+.-..-.|.
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~ 119 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYV 119 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEE
Confidence 23445555555544333343
No 415
>PRK08149 ATP synthase SpaL; Validated
Probab=93.90 E-value=0.19 Score=54.47 Aligned_cols=85 Identities=16% Similarity=0.284 Sum_probs=47.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCC-CCCHHHHHHHHHHHhhcCC------CCCcccHH-----H
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFE-DFDVFRVSKLILNSIASDQ------CTDKDDLN-----L 280 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~------~~~~~~~~-----~ 280 (779)
..++|+|..|+|||||++.++.... -+..+...+.. ..+..++....+....... ..+..... .
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 5789999999999999999987322 12223333433 3344555555554322110 00111111 1
Q ss_pred HHHHHHHHh--CCCeEEEEEeCC
Q 040735 281 LQEKLKKQL--SGKKFLVVLDDV 301 (779)
Q Consensus 281 ~~~~l~~~l--~~k~~LlVlDdv 301 (779)
....+.+++ +++++||++||+
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccch
Confidence 122233333 589999999999
No 416
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.89 E-value=0.039 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999998873
No 417
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.89 E-value=0.18 Score=50.95 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+-.|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999988865
No 418
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.87 E-value=2.2 Score=43.99 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=46.6
Q ss_pred CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch-hhHhhhc-ccccccCCCCChHHHHHHHHH
Q 040735 290 SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ-GVAETMR-AVSTKTLKELSDDDCLRVLIQ 360 (779)
Q Consensus 290 ~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~~ 360 (779)
.+++-++|+||+.......++.+...+-....++.+|++|.+. .+..++. ....+.+.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 3566799999998777778888888877666666666666554 4544433 335667766 66666666643
No 419
>PRK04328 hypothetical protein; Provisional
Probab=93.86 E-value=0.16 Score=51.59 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=30.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCC
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFED 253 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 253 (779)
.-.++.|.|.+|+|||+||.++... ....-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 4579999999999999999987653 1122356788887664
No 420
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.86 E-value=0.15 Score=55.82 Aligned_cols=88 Identities=18% Similarity=0.149 Sum_probs=51.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCC-CHHHHHHHHHHHhhcCC------CCCcccHH-----H
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDF-DVFRVSKLILNSIASDQ------CTDKDDLN-----L 280 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~-----~ 280 (779)
.-++|.|.+|+|||||+.++.+.... .+-+.++++-+.+.. ...++...+...-.... ..+..... .
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 46899999999999999888864322 244666777666554 34445444443211100 00111111 1
Q ss_pred HHHHHHHHh---CCCeEEEEEeCC
Q 040735 281 LQEKLKKQL---SGKKFLVVLDDV 301 (779)
Q Consensus 281 ~~~~l~~~l---~~k~~LlVlDdv 301 (779)
..-.+.+++ .++++|+++||+
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 222334554 379999999999
No 421
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.85 E-value=1.4 Score=45.32 Aligned_cols=59 Identities=8% Similarity=0.027 Sum_probs=38.1
Q ss_pred CCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCc-hhhHhhh-cccccccCCCC
Q 040735 291 GKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRN-QGVAETM-RAVSTKTLKEL 349 (779)
Q Consensus 291 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~-~~~~~~~l~~L 349 (779)
++.-++|+|++...+...+..+...+-....++.+|++|.+ ..+..++ .....+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 55668899999877778888888877665556666555555 4454332 22345555554
No 422
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.84 E-value=0.043 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 423
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.84 E-value=0.047 Score=52.37 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999987
No 424
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.83 E-value=0.062 Score=51.74 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=27.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEE
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTC 249 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 249 (779)
.+++.|+|+.|+|||||++.+.. .....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 37899999999999999999987 3445564444443
No 425
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.80 E-value=0.37 Score=53.21 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=44.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCC--CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDF--DVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL 289 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 289 (779)
..|++++|+.|+||||++..++........-..+..++.. .+ ...+-++...+.++.... ...+..+....+ ..+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~D-t~RigA~EQLr~~AeilGVpv~-~~~~~~Dl~~aL-~~L 332 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD-SYRIGGHEQLRIYGKILGVPVH-AVKDAADLRLAL-SEL 332 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCC-ccchhHHHHHHHHHHHhCCCee-ccCCchhHHHHH-Hhc
Confidence 4799999999999999999988633222111123344432 22 223334444444443322 112222222222 233
Q ss_pred CCCeEEEEEeCCc
Q 040735 290 SGKKFLVVLDDVW 302 (779)
Q Consensus 290 ~~k~~LlVlDdvw 302 (779)
.++ ..+++|-..
T Consensus 333 ~d~-d~VLIDTaG 344 (484)
T PRK06995 333 RNK-HIVLIDTIG 344 (484)
T ss_pred cCC-CeEEeCCCC
Confidence 444 466777764
No 426
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.77 E-value=0.16 Score=45.37 Aligned_cols=76 Identities=17% Similarity=0.343 Sum_probs=30.6
Q ss_pred CCCCccEEEecCCCCCccC-ccccCCCccceEeccccccccccc-ccccccccceeeccCCcchhhchhh-hcCccccce
Q 040735 596 NLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHH 672 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~ 672 (779)
+++.|+.+.+.++ +..++ ..|.++..|+++.+.+ .+..++. .+..+.+|+.+++..+ +..++.. +.+. +|+.
T Consensus 33 ~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~ 107 (129)
T PF13306_consen 33 NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKE 107 (129)
T ss_dssp T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--E
T ss_pred ccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEchhhhcCC-CceE
Confidence 4555666666553 44443 3345555566666644 3444433 2334555666655432 3344333 3343 5555
Q ss_pred eecC
Q 040735 673 LRNP 676 (779)
Q Consensus 673 L~l~ 676 (779)
+.+.
T Consensus 108 i~~~ 111 (129)
T PF13306_consen 108 INIP 111 (129)
T ss_dssp EE-T
T ss_pred EEEC
Confidence 5544
No 427
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.73 E-value=0.28 Score=47.59 Aligned_cols=41 Identities=27% Similarity=0.252 Sum_probs=27.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccc--------CceEEEEeCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHF--------QIKSWTCVFED 253 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~~~~ 253 (779)
.++.|.|++|+||||++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488899999999999998887644332222 25567766555
No 428
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.71 E-value=0.16 Score=57.46 Aligned_cols=46 Identities=20% Similarity=0.117 Sum_probs=34.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..++|....+.++.+.+..... .-..|.|+|..|+||+++|+.++.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHH
Confidence 3689998888877776643221 123578999999999999999875
No 429
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.69 E-value=0.082 Score=54.17 Aligned_cols=42 Identities=26% Similarity=0.168 Sum_probs=34.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCC
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFED 253 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 253 (779)
+.-+++.|.|.+|+|||+++.++.. ........++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 3558999999999999999999876 44455788999988765
No 430
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.67 E-value=0.1 Score=48.36 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 192 KDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 192 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..+++|.++|.. +++.++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhh
Confidence 456778888832 68999999999999999999874
No 431
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.61 E-value=0.34 Score=53.56 Aligned_cols=83 Identities=20% Similarity=0.155 Sum_probs=46.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCT----DKDDLNLLQEKLK 286 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 286 (779)
.-.++.|.|.+|+|||||+.++..... ..-..++|++..+. ..++.. -++.++..... ...+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 346999999999999999999876322 22235677775443 333322 23344321110 1233444444443
Q ss_pred HHhCCCeEEEEEeCC
Q 040735 287 KQLSGKKFLVVLDDV 301 (779)
Q Consensus 287 ~~l~~k~~LlVlDdv 301 (779)
+ .+.-++|+|.+
T Consensus 154 ~---~~~~lVVIDSI 165 (446)
T PRK11823 154 E---EKPDLVVIDSI 165 (446)
T ss_pred h---hCCCEEEEech
Confidence 2 35557888887
No 432
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.61 E-value=0.37 Score=53.30 Aligned_cols=54 Identities=22% Similarity=0.041 Sum_probs=34.6
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCC
Q 040735 193 DKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFE 252 (779)
Q Consensus 193 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 252 (779)
-+..+-+.|..+- ..-.++.|.|.+|+|||||+.++..... ..-..++|++..+
T Consensus 79 Gi~~LD~vLgGGi----~~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EE 132 (454)
T TIGR00416 79 GFGELDRVLGGGI----VPGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEE 132 (454)
T ss_pred CcHHHHHHhcCCc----cCCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcC
Confidence 3445555553322 2447999999999999999998865322 1113467776544
No 433
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.59 E-value=0.26 Score=51.58 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=46.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeC-CCCCHHHHHHHHHHHhhcCC------CCCcccHH-----H
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVF-EDFDVFRVSKLILNSIASDQ------CTDKDDLN-----L 280 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~il~~l~~~~------~~~~~~~~-----~ 280 (779)
..++|+|..|+|||||.+.+..... -+..+...+. +..+..+.....+..-.... ..+..... .
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999999887422 1233334443 33344444444443321110 00111111 1
Q ss_pred HHHHHHHHh--CCCeEEEEEeCC
Q 040735 281 LQEKLKKQL--SGKKFLVVLDDV 301 (779)
Q Consensus 281 ~~~~l~~~l--~~k~~LlVlDdv 301 (779)
..-.+.+++ +++.+|+++||+
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccc
Confidence 111223333 589999999998
No 434
>PRK06217 hypothetical protein; Validated
Probab=93.58 E-value=0.049 Score=52.45 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
-|.|.|.+|+||||+|+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 435
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.57 E-value=0.056 Score=49.89 Aligned_cols=20 Identities=50% Similarity=0.788 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040735 214 VISIKGLGGVGKTTLAQLVY 233 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~ 233 (779)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998876
No 436
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.56 E-value=0.071 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+.++|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4589999999999999999999863
No 437
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.56 E-value=0.52 Score=51.05 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|++|.||||||+.+..
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999999854
No 438
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.55 E-value=0.058 Score=47.60 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhccc
Q 040735 215 ISIKGLGGVGKTTLAQLVYQDD 236 (779)
Q Consensus 215 v~I~G~gGiGKTtLa~~v~~~~ 236 (779)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998643
No 439
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.54 E-value=0.26 Score=53.51 Aligned_cols=85 Identities=21% Similarity=0.247 Sum_probs=45.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCC-CCCHHHHHHHHHHHhhcCC------CCCcccHHH-----
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFE-DFDVFRVSKLILNSIASDQ------CTDKDDLNL----- 280 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~------~~~~~~~~~----- 280 (779)
..++|+|..|+|||||++.+..... . +..+.+.+.+ .-...++....+..-.... ..+......
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999998886322 1 2222233333 3334444444333211110 001111111
Q ss_pred HHHHHHHHh--CCCeEEEEEeCC
Q 040735 281 LQEKLKKQL--SGKKFLVVLDDV 301 (779)
Q Consensus 281 ~~~~l~~~l--~~k~~LlVlDdv 301 (779)
..-.+.+++ +++++|+++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 112234444 589999999999
No 440
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.53 E-value=0.064 Score=49.00 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999987765
No 441
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.53 E-value=0.067 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+..+|+|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 442
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.50 E-value=0.14 Score=58.75 Aligned_cols=75 Identities=16% Similarity=0.063 Sum_probs=53.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+..++.|...+... +.+.++|++|+||||+|+.+.... ...+|+..+|..- ...+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 46899999988888877432 368899999999999999988632 2234567778665 3346666677776
Q ss_pred HHhhc
Q 040735 265 NSIAS 269 (779)
Q Consensus 265 ~~l~~ 269 (779)
..++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 65543
No 443
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.50 E-value=0.33 Score=48.50 Aligned_cols=48 Identities=23% Similarity=0.158 Sum_probs=30.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 263 (779)
..++.|.|++|+||||+|.++.... .+.. ..+++++.. .+..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCC--CCHHHHHHHH
Confidence 4699999999999999986665422 1122 344666633 3445555554
No 444
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.49 E-value=0.19 Score=47.00 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=58.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
.+++|+|..|.|||||++.+.... ......+++......... .......+.-.. +-..-+...-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~--qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLP--LEELRRRIGYVP--QLSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCC--HHHHHhceEEEe--eCCHHHHHHHHHHHHHhcC
Confidence 589999999999999999998732 223333443321111100 001111111100 0111122223344455556
Q ss_pred eEEEEEeCCcCC-ChhhhhhhcccCCCC-CCCcEEEEEcCchhhHhh
Q 040735 293 KFLVVLDDVWNE-NYNSWRALSCPFGAG-AFGSKIVVTHRNQGVAET 337 (779)
Q Consensus 293 ~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTtR~~~v~~~ 337 (779)
+-++++|+.-.. +......+...+... ..+..+|++|-+......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 789999998432 222333333333221 124568888877665544
No 445
>PRK05922 type III secretion system ATPase; Validated
Probab=93.49 E-value=0.24 Score=53.72 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=46.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCC-CHHHHHHHHHHHhhcCCCC------CcccHH-----H
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDF-DVFRVSKLILNSIASDQCT------DKDDLN-----L 280 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~------~~~~~~-----~ 280 (779)
..++|+|..|+|||||.+.+.... ..+....+.+.+.. ...+.+.+........... +..... .
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999998632 12333443343332 3334443333322211100 111111 1
Q ss_pred HHHHHHHHh--CCCeEEEEEeCC
Q 040735 281 LQEKLKKQL--SGKKFLVVLDDV 301 (779)
Q Consensus 281 ~~~~l~~~l--~~k~~LlVlDdv 301 (779)
..-.+.+++ +++++|+++||+
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122233444 589999999999
No 446
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.49 E-value=0.16 Score=55.06 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=48.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC-HHHHHHHHHHHhhcCC------CCCcccHH-----H
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD-VFRVSKLILNSIASDQ------CTDKDDLN-----L 280 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~~------~~~~~~~~-----~ 280 (779)
..++|+|..|+|||||++.+.... ..+.++.+-+.+... ..++...++..-.... ..+..... .
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 578999999999999999998632 124455566655543 3444444433211110 00111111 1
Q ss_pred HHHHHHHHh--CCCeEEEEEeCC
Q 040735 281 LQEKLKKQL--SGKKFLVVLDDV 301 (779)
Q Consensus 281 ~~~~l~~~l--~~k~~LlVlDdv 301 (779)
..-.+.+++ +++++|+++||+
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCh
Confidence 112233444 689999999999
No 447
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.49 E-value=0.34 Score=50.61 Aligned_cols=47 Identities=21% Similarity=0.157 Sum_probs=34.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC-HHHHHHHH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD-VFRVSKLI 263 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i 263 (779)
..++|.|..|+|||+|++++.+.. +-+.++++-+.+... +.+++.++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 478999999999999999998742 234677777776543 44455544
No 448
>PRK05973 replicative DNA helicase; Provisional
Probab=93.49 E-value=0.36 Score=48.14 Aligned_cols=47 Identities=13% Similarity=0.002 Sum_probs=30.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKL 262 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 262 (779)
-.++.|.|.+|+|||++|.++..... ..=..+++++.... ..++...
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHH
Confidence 36889999999999999998865321 22234566666554 3444433
No 449
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.46 E-value=0.23 Score=50.00 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=63.4
Q ss_pred ccccchhhHHHHHHHHhcCC-CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 186 EVYGREKDKEAIVELLLRDD-SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.++|..-..+.|+..+.+-- .+...++-+++.+|.+|+||.-+++.+.++..-..- .........
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl--------------~S~~V~~fv 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGL--------------RSPFVHHFV 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccc--------------cchhHHHhh
Confidence 46777766677766665321 113467889999999999999999988764211100 000111122
Q ss_pred HHhhcCCCCCcccHH----HHHHHHHHHh-CCCeEEEEEeCCcCCChhhhhhhcccCC
Q 040735 265 NSIASDQCTDKDDLN----LLQEKLKKQL-SGKKFLVVLDDVWNENYNSWRALSCPFG 317 (779)
Q Consensus 265 ~~l~~~~~~~~~~~~----~~~~~l~~~l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~ 317 (779)
....-+ ....++ ++...++..+ .-++-|+|+|++.-....-.+.+...+.
T Consensus 149 at~hFP---~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 149 ATLHFP---HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhccCC---ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 222211 222222 3333343333 3478999999996554444555544443
No 450
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.43 E-value=0.059 Score=29.18 Aligned_cols=17 Identities=35% Similarity=0.755 Sum_probs=11.5
Q ss_pred CCccEEEecCCCCCccC
Q 040735 598 PRLRVFSLHGYHISKLP 614 (779)
Q Consensus 598 ~~L~~L~l~~n~l~~lp 614 (779)
++|+.|+|++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998876
No 451
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.43 E-value=0.28 Score=49.12 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=29.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCC
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFED 253 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 253 (779)
.-.++.|.|.+|+|||++|.++.... ...-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccCC
Confidence 44799999999999999998876421 122345678876443
No 452
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.38 E-value=0.21 Score=57.37 Aligned_cols=74 Identities=16% Similarity=0.084 Sum_probs=47.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc-ccCceEEEEeCCCCCHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQR-HFQIKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~i 263 (779)
.+++|.++.++.+...+... +.+.++|++|+||||+|+.+.+. +.. .|...+++.- ...+...+++.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n-~~~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPN-PEDPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeC-CCCCchHHHHHH
Confidence 46899998888888777532 24559999999999999999863 322 2333333322 223444556666
Q ss_pred HHHhhc
Q 040735 264 LNSIAS 269 (779)
Q Consensus 264 l~~l~~ 269 (779)
...++.
T Consensus 87 ~~~~g~ 92 (608)
T TIGR00764 87 PAGEGR 92 (608)
T ss_pred HHhhch
Confidence 665543
No 453
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.37 E-value=0.065 Score=52.67 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..+|+|+|++|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999873
No 454
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.36 E-value=0.056 Score=49.77 Aligned_cols=21 Identities=43% Similarity=0.757 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+|.|.|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999886
No 455
>PRK13949 shikimate kinase; Provisional
Probab=93.36 E-value=0.057 Score=51.12 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
-|.|+|++|+||||+++.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999886
No 456
>PRK13947 shikimate kinase; Provisional
Probab=93.35 E-value=0.056 Score=51.36 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999986
No 457
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.33 E-value=0.08 Score=48.95 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+..+|.+.|.+|.||||+|.+++.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 458
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.30 E-value=0.067 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999763
No 459
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.28 E-value=0.073 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998873
No 460
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.28 E-value=0.059 Score=63.53 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++.|+|+.|.||||+.+.+..
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHH
Confidence 47899999999999999998864
No 461
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.27 E-value=0.23 Score=53.91 Aligned_cols=85 Identities=20% Similarity=0.217 Sum_probs=47.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC-HHHHHHHHHHHhhcCC------CCCcccHH-----H
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD-VFRVSKLILNSIASDQ------CTDKDDLN-----L 280 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~~------~~~~~~~~-----~ 280 (779)
..++|+|..|+|||||++.+++... .+..+++-+.+... ..+.....+..-+... ..+..... .
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~ 234 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAY 234 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999999987332 23445555655443 3344433433211100 00111111 1
Q ss_pred HHHHHHHHh--CCCeEEEEEeCC
Q 040735 281 LQEKLKKQL--SGKKFLVVLDDV 301 (779)
Q Consensus 281 ~~~~l~~~l--~~k~~LlVlDdv 301 (779)
..-.+.+++ +++.+|+++||+
T Consensus 235 ~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCc
Confidence 112233444 589999999999
No 462
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.27 E-value=0.18 Score=54.95 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=51.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC-HHHHHHHHHHHhhcCC------CCCcccHH-----H
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD-VFRVSKLILNSIASDQ------CTDKDDLN-----L 280 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~~------~~~~~~~~-----~ 280 (779)
.-++|.|.+|+|||+|+.++..... +.+-+.++++-+.+... ..++...+...=.... ..+..... .
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 4689999999999999999876422 22336778887776653 3445544443211100 00111111 1
Q ss_pred HHHHHHHHh---CCCeEEEEEeCC
Q 040735 281 LQEKLKKQL---SGKKFLVVLDDV 301 (779)
Q Consensus 281 ~~~~l~~~l---~~k~~LlVlDdv 301 (779)
..-.+.+++ +++++|+++||+
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecCh
Confidence 222334554 468999999999
No 463
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.26 E-value=0.13 Score=50.33 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=57.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC--C----cccHHHHHHHHH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCT--D----KDDLNLLQEKLK 286 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~----~~~~~~~~~~l~ 286 (779)
+++.|.|+.|.||||+.+.+....-.. ....+|.... ....+...|...++..... . ..+..++... .
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i-l 103 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI-L 103 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHH-H
Confidence 789999999999999998886421110 1111111110 0011122222222221110 0 0011122111 1
Q ss_pred HHhCCCeEEEEEeCCcCCC-hhh----hhhhcccCCCCCCCcEEEEEcCchhhHhhhc
Q 040735 287 KQLSGKKFLVVLDDVWNEN-YNS----WRALSCPFGAGAFGSKIVVTHRNQGVAETMR 339 (779)
Q Consensus 287 ~~l~~k~~LlVlDdvw~~~-~~~----~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~ 339 (779)
. +..++-|+++|...... ..+ ...+...+.. .|+.+|++|-..+++..+.
T Consensus 104 ~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 D-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred H-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 1 23567899999974321 111 1122222322 2778999999988776554
No 464
>PF13245 AAA_19: Part of AAA domain
Probab=93.26 E-value=0.13 Score=41.20 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 040735 213 SVISIKGLGGVGKTTLAQLVY 233 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~ 233 (779)
+++.|.|++|.|||+++.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578889999999995554443
No 465
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.26 E-value=0.079 Score=45.34 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 040735 213 SVISIKGLGGVGKTTLAQLVY 233 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~ 233 (779)
..++|+|+.|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 689999999999999998876
No 466
>PRK15453 phosphoribulokinase; Provisional
Probab=93.25 E-value=0.41 Score=48.61 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+..+|+|.|.+|+||||+|+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998875
No 467
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.24 E-value=0.5 Score=44.60 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=43.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHH--hhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 215 ISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNS--IASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 215 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~--l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
+.|.|.+|+|||++|.++... .....+++.-.+.++.+ +...|... ..............+.+.+.+. + +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 678999999999999988753 22355677666666543 33333322 2222111122223333333222 2 2
Q ss_pred eEEEEEeCC
Q 040735 293 KFLVVLDDV 301 (779)
Q Consensus 293 ~~LlVlDdv 301 (779)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347999997
No 468
>PLN02348 phosphoribulokinase
Probab=93.22 E-value=0.1 Score=55.45 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++.+|+|.|.+|+||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998886
No 469
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.21 E-value=0.59 Score=43.13 Aligned_cols=85 Identities=12% Similarity=0.135 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHhhcCCCC-----CcccHHHHHHHHHHHhCCCeEEEEEeCCcC----CChhhhhhhcccCCCCCCCcEE
Q 040735 255 DVFRVSKLILNSIASDQCT-----DKDDLNLLQEKLKKQLSGKKFLVVLDDVWN----ENYNSWRALSCPFGAGAFGSKI 325 (779)
Q Consensus 255 ~~~~~~~~il~~l~~~~~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~----~~~~~~~~l~~~l~~~~~gs~I 325 (779)
+.....+..+.+++..... +-..-++..-.|.+.+...+-+++-|.--. ..-....++.-.+. ...|+..
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln-re~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN-RERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-hhcCceE
Confidence 4556677788887765321 223344555566777888888888886421 11223333333333 2357888
Q ss_pred EEEcCchhhHhhhcc
Q 040735 326 VVTHRNQGVAETMRA 340 (779)
Q Consensus 326 ivTtR~~~v~~~~~~ 340 (779)
|+-|-++.+|..|..
T Consensus 201 VlVTHD~~LA~Rc~R 215 (228)
T COG4181 201 VLVTHDPQLAARCDR 215 (228)
T ss_pred EEEeCCHHHHHhhhh
Confidence 888889999887653
No 470
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.21 E-value=0.062 Score=48.86 Aligned_cols=22 Identities=36% Similarity=0.675 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.++|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999873
No 471
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.21 E-value=0.25 Score=53.91 Aligned_cols=88 Identities=20% Similarity=0.198 Sum_probs=50.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCC-CHHHHHHHHHHHhhcCC------CCCcccHH-----H
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDF-DVFRVSKLILNSIASDQ------CTDKDDLN-----L 280 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~-----~ 280 (779)
.-++|.|.+|+|||||+.++....... +=+.++++-+.+.. ...++...++..=.... ..+..... .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999886532211 11345666666554 34555555554211100 00111111 1
Q ss_pred HHHHHHHHh---CCCeEEEEEeCC
Q 040735 281 LQEKLKKQL---SGKKFLVVLDDV 301 (779)
Q Consensus 281 ~~~~l~~~l---~~k~~LlVlDdv 301 (779)
..-.+.+++ +++++||++||+
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecch
Confidence 122344555 679999999999
No 472
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.18 E-value=0.3 Score=51.83 Aligned_cols=88 Identities=15% Similarity=0.029 Sum_probs=46.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCC-CCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFED-FDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLS 290 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 290 (779)
.++|.++|+.||||||-...++........=..+..++...- ....+-++...+-++.+.. ...+..++...+... +
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE-VVYSPKELAEAIEAL-R 280 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-EecCHHHHHHHHHHh-h
Confidence 689999999999998644443331111111223444544321 2334444555555555544 455566666655443 3
Q ss_pred CCeEEEEEeCCc
Q 040735 291 GKKFLVVLDDVW 302 (779)
Q Consensus 291 ~k~~LlVlDdvw 302 (779)
+. =+|.+|=+.
T Consensus 281 ~~-d~ILVDTaG 291 (407)
T COG1419 281 DC-DVILVDTAG 291 (407)
T ss_pred cC-CEEEEeCCC
Confidence 33 355556654
No 473
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.18 E-value=0.063 Score=50.64 Aligned_cols=21 Identities=52% Similarity=0.669 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 040735 215 ISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 215 v~I~G~gGiGKTtLa~~v~~~ 235 (779)
|.|.|.+|+|||||++.++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999998864
No 474
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.16 E-value=0.073 Score=52.04 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|..|+|||||++.+..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 5899999999999999999865
No 475
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.16 E-value=0.094 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+.+.|+|++|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3568899999999999999999875
No 476
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.13 E-value=0.074 Score=48.49 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=26.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFE 252 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 252 (779)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999998842 223455555555544
No 477
>COG4639 Predicted kinase [General function prediction only]
Probab=93.10 E-value=0.092 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=19.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|.+.|.+|.||+|.|+.-+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~ 24 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFL 24 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCC
Confidence 36889999999999999988544
No 478
>PRK14530 adenylate kinase; Provisional
Probab=93.09 E-value=0.066 Score=53.07 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+.|.|+|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 479
>PRK13948 shikimate kinase; Provisional
Probab=93.08 E-value=0.08 Score=50.62 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+.|.++|+.|+||||+++.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 480
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.07 E-value=0.23 Score=54.96 Aligned_cols=88 Identities=19% Similarity=0.147 Sum_probs=44.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceE-EEEeCCCCC-HHHHHHHHHHHhhcCCCCCccc----HHHHHHHHH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKS-WTCVFEDFD-VFRVSKLILNSIASDQCTDKDD----LNLLQEKLK 286 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~~~~~~-~~~~~~~il~~l~~~~~~~~~~----~~~~~~~l~ 286 (779)
.-..|+|++|+|||||++.+.+.... .+-++.+ .+-|.+... +.++.+.+-..+-..+...... ...+.-.+.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999873211 1223333 333444332 2222222200111111101111 112222233
Q ss_pred HHh--CCCeEEEEEeCC
Q 040735 287 KQL--SGKKFLVVLDDV 301 (779)
Q Consensus 287 ~~l--~~k~~LlVlDdv 301 (779)
+++ .++.+||++|++
T Consensus 496 e~fre~G~dVlillDSl 512 (672)
T PRK12678 496 KRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHcCCCEEEEEeCc
Confidence 444 689999999998
No 481
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.06 E-value=0.18 Score=50.99 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=45.4
Q ss_pred EEEEEEcCCCCcHHHHH-HHHhcccccccccCce-EEEEeCCCCC-HHHHHHHHHHHhhcCC------CCCcccHH----
Q 040735 213 SVISIKGLGGVGKTTLA-QLVYQDDRVQRHFQIK-SWTCVFEDFD-VFRVSKLILNSIASDQ------CTDKDDLN---- 279 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~~~~~~-~~~~~~~il~~l~~~~------~~~~~~~~---- 279 (779)
.-++|.|.+|+|||+|| ..+.+.. .-+.. +++-+.+... ..++...+...=.... ..+.....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 36799999999999996 5565421 22333 5566665543 4445444443211100 00111111
Q ss_pred -----HHHHHHHHHhCCCeEEEEEeCC
Q 040735 280 -----LLQEKLKKQLSGKKFLVVLDDV 301 (779)
Q Consensus 280 -----~~~~~l~~~l~~k~~LlVlDdv 301 (779)
...+.++. +++.+|+++||+
T Consensus 146 ~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 146 PYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 22333333 589999999999
No 482
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.00 E-value=0.42 Score=51.98 Aligned_cols=87 Identities=17% Similarity=0.136 Sum_probs=47.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcC-------CCCCccc----HHHH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASD-------QCTDKDD----LNLL 281 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~-------~~~~~~~----~~~~ 281 (779)
..++|+|..|+|||||++.++..... ...++...-.+.....+.+...+..-+.. ....+.. ....
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~ 233 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKL 233 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHH
Confidence 57899999999999999999874321 11223222223355555555444432111 0001111 1112
Q ss_pred HHHHHHHh--CCCeEEEEEeCCc
Q 040735 282 QEKLKKQL--SGKKFLVVLDDVW 302 (779)
Q Consensus 282 ~~~l~~~l--~~k~~LlVlDdvw 302 (779)
...+.+++ ++++.||++||+-
T Consensus 234 a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 234 ATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHcCCcEEEEecchH
Confidence 22233333 5899999999994
No 483
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.99 E-value=1.6 Score=45.82 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=33.0
Q ss_pred cccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHH
Q 040735 343 TKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 392 (779)
Q Consensus 343 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 392 (779)
++++++++.+|+..++....-...- ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999876533221 111233455667777779998643
No 484
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.99 E-value=0.22 Score=50.97 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=44.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGK 292 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 292 (779)
.+|.|.|+.|.||||++..+... +.. .... -+.+.++.... +.. ..++..... .. ....+.++..++..
T Consensus 81 GlilisG~tGSGKTT~l~all~~--i~~-~~~~-iitiEdp~E~~--~~~-~~q~~v~~~-~~---~~~~~~l~~~lR~~ 149 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSE--LNT-PEKN-IITVEDPVEYQ--IPG-INQVQVNEK-AG---LTFARGLRAILRQD 149 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhh--hCC-CCCe-EEEECCCceec--CCC-ceEEEeCCc-CC---cCHHHHHHHHhccC
Confidence 58999999999999999987652 211 1111 12232221110 000 011111110 11 13456677778888
Q ss_pred eEEEEEeCCcCC
Q 040735 293 KFLVVLDDVWNE 304 (779)
Q Consensus 293 ~~LlVlDdvw~~ 304 (779)
+=.|+++++.+.
T Consensus 150 PD~i~vgEiR~~ 161 (264)
T cd01129 150 PDIIMVGEIRDA 161 (264)
T ss_pred CCEEEeccCCCH
Confidence 889999999553
No 485
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.93 E-value=0.3 Score=53.31 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=46.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCC------CCCcccHH-----HH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQ------CTDKDDLN-----LL 281 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~------~~~~~~~~-----~~ 281 (779)
..++|.|..|+|||||++.+....... ..+++..-.+.....++...+...-.... ..+..... ..
T Consensus 164 q~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~ 240 (441)
T PRK09099 164 QRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYV 240 (441)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 588999999999999999998643211 12333333333344444444433211100 00111111 11
Q ss_pred HHHHHHHh--CCCeEEEEEeCC
Q 040735 282 QEKLKKQL--SGKKFLVVLDDV 301 (779)
Q Consensus 282 ~~~l~~~l--~~k~~LlVlDdv 301 (779)
.-.+.+++ +++.+|+++||+
T Consensus 241 a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 241 ATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 12233444 589999999999
No 486
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.88 E-value=0.063 Score=50.55 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 040735 215 ISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 215 v~I~G~gGiGKTtLa~~v~~ 234 (779)
|.|+|++|+||||+|+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999886
No 487
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.87 E-value=0.36 Score=50.72 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
...++.++|++|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999988763
No 488
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.87 E-value=0.29 Score=53.19 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=48.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC-HHHHHHHHHHHhhcCC------CCCcccHHH-----
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD-VFRVSKLILNSIASDQ------CTDKDDLNL----- 280 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~~------~~~~~~~~~----- 280 (779)
..++|.|..|+|||||.+.+++... -+.++++-+.+... ..++....+..-+... ..+......
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGF 238 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999999997432 24566676665543 3333333222211000 001111111
Q ss_pred HHHHHHHHh--CCCeEEEEEeCC
Q 040735 281 LQEKLKKQL--SGKKFLVVLDDV 301 (779)
Q Consensus 281 ~~~~l~~~l--~~k~~LlVlDdv 301 (779)
..-.+.+++ +++++|+++||+
T Consensus 239 ~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 239 VATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 111233333 589999999999
No 489
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.86 E-value=0.087 Score=51.84 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++++|+++|+.|+|||||..++..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999886
No 490
>PLN02200 adenylate kinase family protein
Probab=92.86 E-value=0.091 Score=52.63 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+.+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998875
No 491
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.84 E-value=0.099 Score=49.02 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..++.|.|++|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368899999999999999999974
No 492
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.84 E-value=0.081 Score=49.19 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 040735 215 ISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 215 v~I~G~gGiGKTtLa~~v~~ 234 (779)
|.|+|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999976
No 493
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.82 E-value=0.39 Score=45.41 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=42.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCC--CCCcccHHHHHHHHHHHhCC
Q 040735 214 VISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQ--CTDKDDLNLLQEKLKKQLSG 291 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~--~~~~~~~~~~~~~l~~~l~~ 291 (779)
++.|.|.+|+||||+|..+.... .. ..+++.-...++ .+....|-....... .........+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 68999999999999999887531 11 123343333333 334444433332221 11111222344444443333
Q ss_pred CeEEEEEeCC
Q 040735 292 KKFLVVLDDV 301 (779)
Q Consensus 292 k~~LlVlDdv 301 (779)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337889987
No 494
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.79 E-value=0.077 Score=49.08 Aligned_cols=21 Identities=43% Similarity=0.694 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 495
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.78 E-value=0.11 Score=58.21 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=37.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+++--.+.++++..||...-. +....+++.+.|++|+||||.++.+++.
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 455556788899999975432 2234579999999999999999998873
No 496
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.78 E-value=0.59 Score=47.21 Aligned_cols=52 Identities=15% Similarity=0.050 Sum_probs=34.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNS 266 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~ 266 (779)
-.++.|.|.+|+|||+++.++..+..... =..++|++... +..++...++..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHHH
Confidence 36899999999999999998865432221 23456666544 455666655543
No 497
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=92.77 E-value=0.39 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
-..++|+|..|+|||||++.+...
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 368899999999999999988863
No 498
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.72 E-value=0.087 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..|.|+|+.|+||||+++.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999999863
No 499
>PRK14527 adenylate kinase; Provisional
Probab=92.70 E-value=0.099 Score=50.73 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+|.|+|++|+||||+|+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999875
No 500
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=92.67 E-value=0.85 Score=50.86 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=32.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++|....++++...+..... .. ..|.|.|..|+||+++|+.+..
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~---~~-~~vli~Ge~GtGK~~lA~~ih~ 184 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAP---SD-ITVLLLGESGTGKEVLARALHQ 184 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhC---CC-CCEEEECCCCcCHHHHHHHHHH
Confidence 477887777777776653221 12 3456999999999999999976
Done!