Query 040735
Match_columns 779
No_of_seqs 660 out of 4157
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 18:14:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8E-48 2.7E-52 437.2 25.2 317 188-527 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.8E-39 1.3E-43 368.5 20.8 286 187-519 130-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1E-37 3.6E-42 392.1 25.9 312 182-525 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 7.3E-35 2.5E-39 336.0 24.2 306 184-523 123-450 (591)
5 4fcg_A Uncharacterized protein 99.7 1E-18 3.6E-23 185.0 7.1 222 542-777 80-316 (328)
6 4fcg_A Uncharacterized protein 99.7 3.1E-18 1.1E-22 181.3 10.1 199 542-753 103-311 (328)
7 1ogq_A PGIP-2, polygalacturona 99.7 5.2E-18 1.8E-22 178.5 7.7 222 543-775 50-281 (313)
8 1w5s_A Origin recognition comp 99.7 5.8E-16 2E-20 169.8 18.4 313 184-514 21-387 (412)
9 3qfl_A MLA10; coiled-coil, (CC 99.7 7.5E-17 2.6E-21 140.0 7.5 80 12-91 2-83 (115)
10 3zyj_A Leucine-rich repeat-con 99.7 2E-16 7E-21 174.9 12.9 222 541-774 62-291 (440)
11 2qen_A Walker-type ATPase; unk 99.7 2.1E-15 7.2E-20 161.4 20.1 292 183-519 10-349 (350)
12 3zyi_A Leucine-rich repeat-con 99.7 2.1E-16 7.1E-21 175.5 12.4 222 541-774 73-302 (452)
13 1ogq_A PGIP-2, polygalacturona 99.7 6.6E-17 2.3E-21 170.0 6.6 201 568-778 50-261 (313)
14 2z66_A Variable lymphocyte rec 99.6 3.4E-16 1.2E-20 164.2 9.4 225 541-775 26-261 (306)
15 1h6u_A Internalin H; cell adhe 99.6 6.4E-16 2.2E-20 162.0 11.1 170 596-778 61-233 (308)
16 3rgz_A Protein brassinosteroid 99.6 8.7E-16 3E-20 181.9 12.5 119 564-688 438-558 (768)
17 2ft3_A Biglycan; proteoglycan, 99.6 3E-15 1E-19 159.0 14.9 221 541-777 52-279 (332)
18 3zyi_A Leucine-rich repeat-con 99.6 1.1E-15 3.9E-20 169.5 12.2 199 568-778 75-282 (452)
19 4eco_A Uncharacterized protein 99.6 7.9E-16 2.7E-20 178.0 11.1 195 542-748 248-462 (636)
20 3zyj_A Leucine-rich repeat-con 99.6 1.3E-15 4.4E-20 168.5 11.7 199 568-778 64-271 (440)
21 1xku_A Decorin; proteoglycan, 99.6 3.1E-15 1.1E-19 158.6 13.9 223 541-778 50-279 (330)
22 2z80_A TOLL-like receptor 2, v 99.6 6.1E-16 2.1E-20 165.8 8.3 177 541-728 50-232 (353)
23 2fna_A Conserved hypothetical 99.6 3E-14 1E-18 152.8 21.5 292 183-518 11-356 (357)
24 2z66_A Variable lymphocyte rec 99.6 5.5E-16 1.9E-20 162.6 7.6 200 568-777 28-238 (306)
25 3rgz_A Protein brassinosteroid 99.6 9.7E-16 3.3E-20 181.5 10.3 151 543-700 394-546 (768)
26 4eco_A Uncharacterized protein 99.6 4.8E-16 1.6E-20 179.8 6.7 225 542-778 205-473 (636)
27 4ecn_A Leucine-rich repeat pro 99.6 2.1E-15 7.3E-20 177.8 12.0 152 542-702 490-654 (876)
28 2id5_A Lingo-1, leucine rich r 99.6 1.8E-15 6.2E-20 169.2 10.9 226 541-777 30-287 (477)
29 3o6n_A APL1; leucine-rich repe 99.6 6.3E-15 2.1E-19 160.2 14.5 223 543-778 45-311 (390)
30 3oja_B Anopheles plasmodium-re 99.6 4.1E-15 1.4E-19 171.0 13.4 223 543-778 51-317 (597)
31 4ecn_A Leucine-rich repeat pro 99.6 1.4E-15 4.9E-20 179.3 8.9 201 566-778 489-713 (876)
32 1ozn_A Reticulon 4 receptor; N 99.6 2.8E-15 9.4E-20 155.5 10.0 175 542-727 31-210 (285)
33 3v47_A TOLL-like receptor 5B a 99.6 4.2E-15 1.4E-19 165.3 11.7 87 543-636 79-169 (455)
34 1p9a_G Platelet glycoprotein I 99.6 5.6E-15 1.9E-19 153.3 11.1 123 568-699 31-155 (290)
35 4fmz_A Internalin; leucine ric 99.6 1.4E-14 5E-19 154.7 14.3 173 594-778 106-281 (347)
36 2id5_A Lingo-1, leucine rich r 99.6 8.8E-15 3E-19 163.7 12.6 202 568-778 32-240 (477)
37 3v47_A TOLL-like receptor 5B a 99.6 5.2E-15 1.8E-19 164.5 10.5 131 541-679 28-165 (455)
38 3vq2_A TLR4, TOLL-like recepto 99.6 2.7E-15 9.3E-20 173.2 7.8 203 564-775 346-558 (606)
39 4fmz_A Internalin; leucine ric 99.5 2.4E-14 8.1E-19 153.0 14.0 211 543-776 88-301 (347)
40 2o6q_A Variable lymphocyte rec 99.5 2E-14 6.8E-19 147.7 12.3 177 568-774 37-217 (270)
41 3vq2_A TLR4, TOLL-like recepto 99.5 6.3E-15 2.2E-19 170.2 9.5 147 541-695 30-180 (606)
42 1ozn_A Reticulon 4 receptor; N 99.5 2.2E-14 7.6E-19 148.6 12.6 198 567-775 31-238 (285)
43 3rfs_A Internalin B, repeat mo 99.5 4.5E-15 1.5E-19 152.7 6.7 191 543-756 41-235 (272)
44 1p9a_G Platelet glycoprotein I 99.5 3.5E-14 1.2E-18 147.3 12.7 198 563-775 5-208 (290)
45 1wwl_A Monocyte differentiatio 99.5 2.3E-15 8E-20 158.2 3.9 199 566-776 93-310 (312)
46 2z62_A TOLL-like receptor 4, v 99.5 1.2E-14 4.1E-19 149.9 9.0 178 594-775 48-237 (276)
47 2z81_A CD282 antigen, TOLL-lik 99.5 7E-15 2.4E-19 167.6 7.7 150 541-697 24-177 (549)
48 3o6n_A APL1; leucine-rich repe 99.5 1.5E-14 5.3E-19 157.2 9.8 199 566-778 43-288 (390)
49 2ft3_A Biglycan; proteoglycan, 99.5 3.8E-14 1.3E-18 150.4 12.6 197 567-779 53-258 (332)
50 1xku_A Decorin; proteoglycan, 99.5 4E-14 1.4E-18 150.1 12.4 197 568-779 52-257 (330)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 5.3E-14 1.8E-18 160.7 14.3 104 542-654 51-156 (562)
52 1wwl_A Monocyte differentiatio 99.5 2.6E-15 9E-20 157.8 3.0 182 596-779 93-291 (312)
53 3oja_B Anopheles plasmodium-re 99.5 1.4E-14 4.9E-19 166.5 9.4 200 566-778 49-294 (597)
54 2z7x_B TOLL-like receptor 1, v 99.5 3.6E-14 1.2E-18 160.6 11.7 103 543-654 21-125 (520)
55 3t6q_A CD180 antigen; protein- 99.5 2.3E-14 8E-19 165.4 10.3 225 543-777 278-515 (606)
56 2xwt_C Thyrotropin receptor; s 99.5 1.2E-14 4.2E-19 146.3 6.5 191 569-772 32-236 (239)
57 3bz5_A Internalin-J, INLJ; leu 99.5 2.8E-14 9.6E-19 157.9 9.9 207 542-778 41-249 (457)
58 2z80_A TOLL-like receptor 2, v 99.5 1.4E-14 4.8E-19 155.1 7.2 196 568-774 52-261 (353)
59 1h6u_A Internalin H; cell adhe 99.5 3.4E-14 1.2E-18 148.9 9.7 170 596-778 39-211 (308)
60 3bz5_A Internalin-J, INLJ; leu 99.5 1.2E-13 4.1E-18 152.8 14.2 204 542-776 63-268 (457)
61 1h6t_A Internalin B; cell adhe 99.5 5.3E-14 1.8E-18 146.0 10.5 148 563-728 41-188 (291)
62 2z62_A TOLL-like receptor 4, v 99.5 4E-14 1.4E-18 146.0 9.5 177 598-778 28-216 (276)
63 3t6q_A CD180 antigen; protein- 99.5 7.5E-14 2.6E-18 161.1 12.8 226 543-778 301-539 (606)
64 1o6v_A Internalin A; bacterial 99.5 1.9E-13 6.4E-18 152.3 14.8 141 543-699 68-228 (466)
65 2z63_A TOLL-like receptor 4, v 99.5 3.4E-14 1.1E-18 162.8 8.7 146 541-694 26-175 (570)
66 1ziw_A TOLL-like receptor 3; i 99.5 4.3E-14 1.5E-18 165.5 9.7 152 541-700 23-179 (680)
67 1o6v_A Internalin A; bacterial 99.5 1.4E-13 4.7E-18 153.3 13.1 212 543-778 46-281 (466)
68 3j0a_A TOLL-like receptor 5; m 99.5 1.1E-13 3.8E-18 165.6 13.1 107 541-654 22-133 (844)
69 2qby_B CDC6 homolog 3, cell di 99.5 4.2E-12 1.4E-16 137.5 23.9 292 185-502 20-340 (384)
70 3oja_A Leucine-rich immune mol 99.5 2E-14 6.9E-19 160.5 5.6 212 543-775 34-250 (487)
71 2z81_A CD282 antigen, TOLL-lik 99.5 4.1E-14 1.4E-18 161.3 8.1 177 568-754 26-207 (549)
72 3oja_A Leucine-rich immune mol 99.5 4.8E-14 1.6E-18 157.4 8.2 99 593-699 53-151 (487)
73 2v1u_A Cell division control p 99.5 4.1E-12 1.4E-16 137.7 23.2 293 185-501 19-351 (387)
74 2ast_B S-phase kinase-associat 99.5 1.2E-14 4.2E-19 154.5 3.0 206 564-776 89-307 (336)
75 3rfs_A Internalin B, repeat mo 99.5 3E-13 1E-17 139.0 12.8 103 594-699 59-164 (272)
76 2o6q_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 138.7 12.8 177 541-729 35-216 (270)
77 1m9s_A Internalin B; cell inva 99.4 1.2E-13 4E-18 157.4 9.5 147 563-727 60-206 (605)
78 3o53_A Protein LRIM1, AGAP0063 99.4 4.2E-14 1.4E-18 148.9 5.0 211 543-775 34-250 (317)
79 4ezg_A Putative uncharacterize 99.4 3E-13 1E-17 131.6 10.7 148 566-727 42-190 (197)
80 1fnn_A CDC6P, cell division co 99.4 9.1E-12 3.1E-16 135.1 22.9 298 185-502 17-352 (389)
81 2z63_A TOLL-like receptor 4, v 99.4 1.2E-13 4E-18 158.3 8.2 217 544-775 305-531 (570)
82 3j0a_A TOLL-like receptor 5; m 99.4 4.4E-13 1.5E-17 160.5 12.8 132 644-778 266-397 (844)
83 2xwt_C Thyrotropin receptor; s 99.4 2.2E-13 7.7E-18 137.0 8.7 194 541-748 29-231 (239)
84 4glp_A Monocyte differentiatio 99.4 5.2E-13 1.8E-17 140.0 11.8 198 544-776 92-308 (310)
85 4ezg_A Putative uncharacterize 99.4 4.9E-13 1.7E-17 130.2 10.5 146 543-702 44-191 (197)
86 3g06_A SSPH2 (leucine-rich rep 99.4 6.9E-13 2.4E-17 151.3 13.2 101 541-663 59-159 (622)
87 1ziw_A TOLL-like receptor 3; i 99.4 8.4E-13 2.9E-17 154.5 14.0 185 591-778 398-600 (680)
88 3m19_A Variable lymphocyte rec 99.4 7E-13 2.4E-17 134.5 11.5 147 569-728 15-165 (251)
89 3m19_A Variable lymphocyte rec 99.4 7.4E-13 2.5E-17 134.3 11.2 128 564-699 55-186 (251)
90 2ast_B S-phase kinase-associat 99.4 8.9E-14 3E-18 147.8 3.8 179 543-728 93-282 (336)
91 2z7x_B TOLL-like receptor 1, v 99.4 6.4E-13 2.2E-17 150.2 11.1 151 618-775 321-481 (520)
92 1h6t_A Internalin B; cell adhe 99.4 1E-12 3.6E-17 136.2 11.6 164 544-728 47-210 (291)
93 2je0_A Acidic leucine-rich nuc 99.4 3.2E-13 1.1E-17 125.0 6.9 124 567-699 16-147 (149)
94 2ell_A Acidic leucine-rich nuc 99.4 5.6E-13 1.9E-17 126.1 8.3 126 568-702 24-157 (168)
95 2qby_A CDC6 homolog 1, cell di 99.4 1.1E-11 3.9E-16 134.1 19.2 295 184-501 19-348 (386)
96 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 8.3E-13 2.8E-17 150.8 10.6 151 618-775 350-510 (562)
97 3o53_A Protein LRIM1, AGAP0063 99.4 6.2E-13 2.1E-17 139.9 8.1 194 565-778 31-230 (317)
98 1jl5_A Outer protein YOPM; leu 99.4 5.4E-13 1.8E-17 147.4 7.7 74 598-679 91-164 (454)
99 1xeu_A Internalin C; cellular 99.4 2.3E-12 7.7E-17 131.5 11.4 145 564-727 37-181 (263)
100 4g8a_A TOLL-like receptor 4; l 99.3 1.3E-12 4.3E-17 151.6 10.4 128 568-702 52-183 (635)
101 1a9n_A U2A', U2A'; complex (nu 99.3 8.2E-13 2.8E-17 126.0 7.2 130 562-702 13-150 (176)
102 3e6j_A Variable lymphocyte rec 99.3 1.5E-12 5.3E-17 129.8 9.2 127 568-702 40-169 (229)
103 4glp_A Monocyte differentiatio 99.3 8.9E-13 3E-17 138.3 7.8 177 596-778 89-288 (310)
104 1xeu_A Internalin C; cellular 99.3 1.8E-12 6.2E-17 132.2 9.6 143 543-703 41-183 (263)
105 1jl5_A Outer protein YOPM; leu 99.3 3.4E-12 1.2E-16 140.9 12.5 116 568-701 131-246 (454)
106 3g06_A SSPH2 (leucine-rich rep 99.3 4.5E-12 1.5E-16 144.6 13.7 120 541-686 79-198 (622)
107 1m9s_A Internalin B; cell inva 99.3 1.9E-12 6.6E-17 147.4 9.9 144 542-702 64-207 (605)
108 4ay9_X Follicle-stimulating ho 99.3 2.2E-12 7.6E-17 137.7 9.3 221 541-771 28-255 (350)
109 2v9t_B SLIT homolog 2 protein 99.3 3.1E-12 1.1E-16 126.7 9.3 127 568-702 32-162 (220)
110 2ca6_A RAN GTPase-activating p 99.3 2.5E-13 8.5E-18 147.3 1.0 228 543-776 32-317 (386)
111 3e6j_A Variable lymphocyte rec 99.3 5.6E-12 1.9E-16 125.7 10.6 128 598-729 40-170 (229)
112 2v70_A SLIT-2, SLIT homolog 2 99.3 3.1E-12 1.1E-16 126.7 8.5 126 569-701 33-162 (220)
113 4b8c_D Glucose-repressible alc 99.3 2.2E-12 7.5E-17 150.7 8.2 107 594-702 220-326 (727)
114 2v9t_B SLIT homolog 2 protein 99.3 6.7E-12 2.3E-16 124.3 10.5 128 598-728 32-162 (220)
115 2je0_A Acidic leucine-rich nuc 99.3 1.7E-12 5.7E-17 120.1 5.5 126 596-725 15-147 (149)
116 2ell_A Acidic leucine-rich nuc 99.3 5.6E-12 1.9E-16 119.1 9.1 137 541-687 22-165 (168)
117 2ca6_A RAN GTPase-activating p 99.3 6.3E-13 2.2E-17 144.1 2.3 131 564-700 28-195 (386)
118 3cvr_A Invasion plasmid antige 99.3 5.5E-12 1.9E-16 142.1 9.7 169 544-748 60-235 (571)
119 1njg_A DNA polymerase III subu 99.3 5.4E-11 1.9E-15 119.7 15.9 198 185-399 23-231 (250)
120 4b8c_D Glucose-repressible alc 99.3 4.9E-13 1.7E-17 156.3 0.8 118 563-688 219-336 (727)
121 4g8a_A TOLL-like receptor 4; l 99.3 4.9E-12 1.7E-16 146.6 9.2 147 541-696 50-201 (635)
122 2o6s_A Variable lymphocyte rec 99.2 1.4E-11 4.9E-16 120.8 9.7 125 568-701 28-157 (208)
123 2v70_A SLIT-2, SLIT homolog 2 99.2 1.9E-11 6.5E-16 121.0 10.6 134 541-681 30-166 (220)
124 2o6s_A Variable lymphocyte rec 99.2 2.6E-11 8.8E-16 119.0 10.9 148 597-756 27-178 (208)
125 1dce_A Protein (RAB geranylger 99.2 1E-11 3.6E-16 140.5 8.3 99 599-701 442-542 (567)
126 2xot_A Amphoterin-induced prot 99.2 2.3E-11 8E-16 130.3 9.5 103 596-700 62-171 (361)
127 1dce_A Protein (RAB geranylger 99.2 2.6E-11 8.8E-16 137.3 9.9 118 569-697 442-565 (567)
128 3cvr_A Invasion plasmid antige 99.2 3.4E-11 1.2E-15 135.6 10.4 175 568-776 59-244 (571)
129 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-11 5.1E-16 117.2 6.2 129 594-727 15-149 (176)
130 1w8a_A SLIT protein; signaling 99.2 2.5E-11 8.6E-16 117.3 7.8 102 599-701 30-135 (192)
131 2xot_A Amphoterin-induced prot 99.2 5.5E-11 1.9E-15 127.4 11.0 135 590-728 33-173 (361)
132 2chg_A Replication factor C sm 99.2 2.8E-10 9.7E-15 112.7 15.0 186 185-397 17-205 (226)
133 2wfh_A SLIT homolog 2 protein 99.2 4.9E-11 1.7E-15 115.3 8.9 102 598-701 31-135 (193)
134 1w8a_A SLIT protein; signaling 99.2 6.2E-11 2.1E-15 114.6 9.6 124 601-730 11-138 (192)
135 2wfh_A SLIT homolog 2 protein 99.1 1.2E-10 4.1E-15 112.6 10.6 122 601-728 13-136 (193)
136 3goz_A Leucine-rich repeat-con 99.1 1.6E-11 5.3E-16 131.8 4.5 225 541-775 20-297 (362)
137 1ds9_A Outer arm dynein; leuci 99.1 9.3E-13 3.2E-17 128.3 -5.0 104 593-700 43-148 (198)
138 1ds9_A Outer arm dynein; leuci 99.1 2.2E-12 7.6E-17 125.6 -3.9 128 563-700 43-182 (198)
139 1z7x_W Ribonuclease inhibitor; 99.1 2.1E-11 7E-16 135.6 1.9 151 621-775 142-326 (461)
140 2r9u_A Variable lymphocyte rec 99.1 1.9E-10 6.6E-15 109.0 8.2 81 598-679 33-116 (174)
141 1z7x_W Ribonuclease inhibitor; 99.1 1.4E-11 4.9E-16 136.9 0.1 224 543-774 28-296 (461)
142 3g39_A Variable lymphocyte rec 99.1 2.5E-10 8.5E-15 107.9 8.1 95 601-699 12-109 (170)
143 2r9u_A Variable lymphocyte rec 99.0 1.9E-10 6.4E-15 109.1 7.0 100 600-703 14-116 (174)
144 4ay9_X Follicle-stimulating ho 99.0 1.8E-10 6.1E-15 122.9 7.5 200 568-778 30-240 (350)
145 3goz_A Leucine-rich repeat-con 99.0 5.6E-11 1.9E-15 127.4 2.7 200 566-775 20-266 (362)
146 1hqc_A RUVB; extended AAA-ATPa 99.0 5.3E-10 1.8E-14 117.8 9.1 268 185-500 12-324 (324)
147 2o6r_A Variable lymphocyte rec 99.0 5.8E-10 2E-14 106.1 8.3 102 598-701 28-133 (177)
148 2o6r_A Variable lymphocyte rec 99.0 8.1E-10 2.8E-14 105.2 9.0 108 567-682 27-138 (177)
149 1sxj_B Activator 1 37 kDa subu 99.0 4E-09 1.4E-13 111.0 14.3 185 185-396 21-210 (323)
150 3g39_A Variable lymphocyte rec 99.0 1E-09 3.4E-14 103.7 8.2 88 590-680 24-114 (170)
151 3ogk_B Coronatine-insensitive 98.9 1.6E-09 5.6E-14 124.3 6.4 216 544-770 113-350 (592)
152 3ogk_B Coronatine-insensitive 98.8 4.1E-10 1.4E-14 129.4 0.7 172 596-771 218-412 (592)
153 2ifg_A High affinity nerve gro 98.8 7.1E-09 2.4E-13 110.3 8.3 89 589-679 23-114 (347)
154 1iqp_A RFCS; clamp loader, ext 98.8 2.7E-08 9.1E-13 104.8 12.4 188 185-399 25-215 (327)
155 2p1m_B Transport inhibitor res 98.8 1.4E-09 4.8E-14 124.9 2.2 149 543-697 105-270 (594)
156 2p1m_B Transport inhibitor res 98.7 2.9E-09 9.9E-14 122.3 0.9 199 565-771 102-347 (594)
157 1jr3_A DNA polymerase III subu 98.7 1.9E-07 6.5E-12 100.2 14.5 196 185-396 16-221 (373)
158 2ifg_A High affinity nerve gro 98.6 2.9E-08 1E-12 105.5 7.7 85 564-654 27-113 (347)
159 2chq_A Replication factor C sm 98.6 2.9E-07 9.9E-12 96.4 14.6 182 185-396 17-204 (319)
160 3te6_A Regulatory protein SIR3 98.6 2E-07 6.9E-12 95.9 12.6 172 186-362 21-211 (318)
161 3sb4_A Hypothetical leucine ri 98.6 1.9E-08 6.4E-13 106.1 3.1 107 544-653 26-157 (329)
162 1jbk_A CLPB protein; beta barr 98.5 5.6E-07 1.9E-11 86.3 10.3 45 185-235 22-66 (195)
163 1sxj_D Activator 1 41 kDa subu 98.4 1.9E-06 6.4E-11 91.6 14.2 196 185-396 37-235 (353)
164 3bos_A Putative DNA replicatio 98.4 3.6E-07 1.2E-11 91.3 7.8 174 185-396 28-217 (242)
165 3pfi_A Holliday junction ATP-d 98.4 6.5E-06 2.2E-10 86.8 16.7 178 185-396 29-227 (338)
166 3sb4_A Hypothetical leucine ri 98.3 4.6E-07 1.6E-11 95.3 7.3 56 567-630 100-157 (329)
167 2z4s_A Chromosomal replication 98.3 5E-06 1.7E-10 90.7 15.4 161 212-394 130-304 (440)
168 3pvs_A Replication-associated 98.3 5.1E-06 1.7E-10 90.5 14.0 180 185-396 26-215 (447)
169 3un9_A NLR family member X1; l 98.3 9.3E-08 3.2E-12 102.2 0.0 152 542-702 71-249 (372)
170 3h4m_A Proteasome-activating n 98.3 5.2E-06 1.8E-10 85.2 12.6 186 184-395 16-230 (285)
171 4fdw_A Leucine rich hypothetic 98.2 3E-06 1E-10 91.3 9.7 169 596-777 178-360 (401)
172 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1.3E-05 4.5E-10 81.0 14.0 188 185-396 6-222 (262)
173 3un9_A NLR family member X1; l 98.2 7E-07 2.4E-11 95.3 4.4 130 543-680 101-251 (372)
174 1sxj_A Activator 1 95 kDa subu 98.2 8.3E-06 2.8E-10 91.1 13.3 195 185-396 39-253 (516)
175 3uk6_A RUVB-like 2; hexameric 98.2 1.6E-05 5.6E-10 84.8 14.8 197 185-396 44-303 (368)
176 1d2n_A N-ethylmaleimide-sensit 98.2 4.1E-05 1.4E-09 77.9 17.1 171 186-388 34-229 (272)
177 1a5t_A Delta prime, HOLB; zinc 98.2 3E-05 1E-09 81.4 16.4 172 191-396 8-205 (334)
178 1sxj_E Activator 1 40 kDa subu 98.2 1E-05 3.5E-10 85.9 12.5 196 185-396 14-237 (354)
179 3u61_B DNA polymerase accessor 98.1 1.8E-05 6E-10 82.9 13.8 179 185-394 26-214 (324)
180 3syl_A Protein CBBX; photosynt 98.1 1E-05 3.6E-10 84.0 10.9 159 186-363 32-218 (309)
181 2p65_A Hypothetical protein PF 98.0 5.8E-06 2E-10 78.6 6.6 45 185-235 22-66 (187)
182 3eie_A Vacuolar protein sortin 98.0 0.00016 5.3E-09 75.5 17.7 186 184-396 17-228 (322)
183 1l8q_A Chromosomal replication 98.0 6.5E-05 2.2E-09 78.6 14.8 155 212-391 37-203 (324)
184 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.0003 1E-08 73.2 19.1 190 184-397 11-224 (322)
185 1sxj_C Activator 1 40 kDa subu 98.0 6.8E-05 2.3E-09 79.0 14.0 184 185-395 25-211 (340)
186 4fdw_A Leucine rich hypothetic 97.9 2.6E-05 8.7E-10 84.0 10.3 192 562-772 174-380 (401)
187 3n70_A Transport activator; si 97.9 1.4E-05 4.9E-10 72.6 7.0 114 186-332 2-116 (145)
188 2qp9_X Vacuolar protein sortin 97.9 0.00024 8.4E-09 75.0 17.2 187 185-396 51-261 (355)
189 3rw6_A Nuclear RNA export fact 97.9 8.1E-06 2.8E-10 81.8 5.4 78 596-674 168-257 (267)
190 3d8b_A Fidgetin-like protein 1 97.9 0.00022 7.4E-09 75.5 16.1 188 185-397 84-296 (357)
191 2gno_A DNA polymerase III, gam 97.9 8.2E-05 2.8E-09 76.5 12.0 149 189-362 1-152 (305)
192 3ec2_A DNA replication protein 97.8 2.1E-05 7.3E-10 74.4 6.9 122 190-332 19-143 (180)
193 3pxg_A Negative regulator of g 97.8 7.2E-05 2.5E-09 82.2 11.7 149 185-362 180-338 (468)
194 1io0_A Tropomodulin; LRR prote 97.8 7.7E-06 2.6E-10 77.9 3.4 83 596-679 34-134 (185)
195 1io0_A Tropomodulin; LRR prote 97.8 1.6E-05 5.3E-10 75.7 5.4 109 564-679 32-162 (185)
196 3b9p_A CG5977-PA, isoform A; A 97.8 0.0005 1.7E-08 70.7 16.7 184 185-396 21-233 (297)
197 2zan_A Vacuolar protein sortin 97.7 0.00043 1.5E-08 75.5 16.2 189 184-396 133-345 (444)
198 3cf0_A Transitional endoplasmi 97.7 0.00046 1.6E-08 71.1 15.6 180 185-390 15-222 (301)
199 3vfd_A Spastin; ATPase, microt 97.7 0.00059 2E-08 73.2 16.9 188 184-396 114-326 (389)
200 3rw6_A Nuclear RNA export fact 97.7 1.5E-05 5.2E-10 79.9 4.0 98 603-702 148-261 (267)
201 1qvr_A CLPB protein; coiled co 97.7 4.5E-05 1.5E-09 90.6 8.7 155 185-361 170-344 (854)
202 2w58_A DNAI, primosome compone 97.7 3.6E-05 1.2E-09 74.4 6.0 120 192-332 36-159 (202)
203 2ra8_A Uncharacterized protein 97.6 7.7E-05 2.6E-09 78.8 8.0 15 620-634 251-265 (362)
204 3e4g_A ATP synthase subunit S, 97.6 3.8E-05 1.3E-09 71.3 4.4 85 598-682 61-153 (176)
205 2ra8_A Uncharacterized protein 97.6 3.8E-05 1.3E-09 81.2 5.1 128 596-727 170-316 (362)
206 3hu3_A Transitional endoplasmi 97.6 0.00044 1.5E-08 75.9 13.7 185 185-395 204-414 (489)
207 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00063 2.2E-08 79.9 15.8 156 185-362 186-362 (758)
208 3co5_A Putative two-component 97.6 3.2E-05 1.1E-09 70.0 3.6 46 186-235 5-50 (143)
209 1in4_A RUVB, holliday junction 97.6 0.0022 7.7E-08 67.0 17.9 178 185-396 25-223 (334)
210 3pxi_A Negative regulator of g 97.5 0.00029 9.9E-09 82.6 11.6 149 185-362 180-338 (758)
211 4fcw_A Chaperone protein CLPB; 97.5 0.00057 1.9E-08 70.8 12.2 49 186-234 18-69 (311)
212 2bjv_A PSP operon transcriptio 97.4 0.00033 1.1E-08 70.8 9.3 46 186-235 7-52 (265)
213 4b4t_J 26S protease regulatory 97.4 0.00097 3.3E-08 70.3 12.8 180 184-389 147-354 (405)
214 1ojl_A Transcriptional regulat 97.4 0.00045 1.5E-08 71.2 9.5 45 186-234 3-47 (304)
215 2r62_A Cell division protease 97.4 0.00015 5E-09 73.5 5.5 51 185-235 11-67 (268)
216 2c9o_A RUVB-like 1; hexameric 97.3 0.00071 2.4E-08 74.1 11.2 99 294-396 297-410 (456)
217 3e4g_A ATP synthase subunit S, 97.3 6.8E-05 2.3E-09 69.6 2.4 91 612-702 52-149 (176)
218 4b4t_L 26S protease subunit RP 97.3 0.0013 4.3E-08 70.6 12.1 181 183-389 179-387 (437)
219 1ofh_A ATP-dependent HSL prote 97.2 0.00089 3.1E-08 69.2 10.0 50 185-234 15-72 (310)
220 2kjq_A DNAA-related protein; s 97.2 0.00012 3.9E-09 66.7 2.8 23 213-235 37-59 (149)
221 4b4t_K 26S protease regulatory 97.2 0.0012 4.2E-08 70.5 10.1 52 183-234 170-228 (428)
222 2ce7_A Cell division protein F 97.2 0.0033 1.1E-07 68.4 13.6 179 185-389 16-221 (476)
223 3pxi_A Negative regulator of g 97.2 0.0013 4.4E-08 77.2 11.1 155 185-361 491-674 (758)
224 1lv7_A FTSH; alpha/beta domain 97.1 0.0061 2.1E-07 60.9 14.6 183 185-393 12-222 (257)
225 4b4t_M 26S protease regulatory 97.1 0.00087 3E-08 71.8 7.9 179 183-388 179-386 (434)
226 2cvh_A DNA repair and recombin 97.0 0.0026 9E-08 61.8 10.4 85 212-302 20-115 (220)
227 3m6a_A ATP-dependent protease 97.0 0.0016 5.5E-08 72.8 9.7 50 185-234 81-130 (543)
228 4b4t_H 26S protease regulatory 97.0 0.0035 1.2E-07 67.0 11.5 179 185-389 209-415 (467)
229 2r44_A Uncharacterized protein 97.0 0.0024 8.3E-08 66.7 10.2 151 186-363 28-199 (331)
230 4b4t_I 26S protease regulatory 97.0 0.0018 6.2E-08 68.5 8.9 181 183-389 180-388 (437)
231 3cf2_A TER ATPase, transitiona 96.8 0.016 5.3E-07 67.0 15.9 179 185-389 204-407 (806)
232 2qgz_A Helicase loader, putati 96.8 0.0006 2.1E-08 70.3 3.8 43 190-235 133-175 (308)
233 3nbx_X ATPase RAVA; AAA+ ATPas 96.8 0.0065 2.2E-07 66.6 11.7 42 186-235 23-64 (500)
234 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00089 3E-08 68.1 4.5 67 212-301 123-191 (331)
235 1qvr_A CLPB protein; coiled co 96.6 0.0049 1.7E-07 73.1 10.3 49 186-234 559-610 (854)
236 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0062 2.1E-07 71.4 9.6 50 185-234 458-510 (758)
237 3t15_A Ribulose bisphosphate c 96.3 0.0029 9.9E-08 64.7 4.9 26 210-235 34-59 (293)
238 3hr8_A Protein RECA; alpha and 96.3 0.0087 3E-07 62.4 8.3 85 211-302 60-149 (356)
239 1ypw_A Transitional endoplasmi 96.2 0.025 8.6E-07 66.2 12.9 158 184-362 203-385 (806)
240 2dhr_A FTSH; AAA+ protein, hex 96.1 0.034 1.2E-06 60.8 12.3 176 184-389 30-236 (499)
241 3rfe_A Platelet glycoprotein I 96.0 0.0074 2.5E-07 53.1 5.5 53 601-655 11-66 (130)
242 1v5w_A DMC1, meiotic recombina 96.0 0.02 6.7E-07 59.9 9.7 90 211-301 121-228 (343)
243 2x8a_A Nuclear valosin-contain 96.0 0.029 9.9E-07 56.5 10.5 48 185-235 10-67 (274)
244 3io5_A Recombination and repai 96.0 0.019 6.5E-07 58.1 8.8 82 214-302 30-121 (333)
245 1n0w_A DNA repair protein RAD5 95.9 0.014 4.8E-07 57.6 7.7 89 212-301 24-128 (243)
246 1xp8_A RECA protein, recombina 95.9 0.018 6.1E-07 60.5 8.7 83 212-301 74-161 (366)
247 1g5t_A COB(I)alamin adenosyltr 95.8 0.0054 1.9E-07 57.6 3.9 114 213-332 29-163 (196)
248 1rz3_A Hypothetical protein rb 95.8 0.01 3.5E-07 56.8 5.8 43 189-234 2-44 (201)
249 2z43_A DNA repair and recombin 95.7 0.025 8.5E-07 58.6 8.7 89 212-301 107-212 (324)
250 2zr9_A Protein RECA, recombina 95.7 0.022 7.6E-07 59.5 8.3 84 212-302 61-149 (349)
251 2b8t_A Thymidine kinase; deoxy 95.6 0.006 2E-07 59.1 3.2 113 212-332 12-126 (223)
252 1odf_A YGR205W, hypothetical 3 95.4 0.066 2.3E-06 54.2 10.6 82 210-291 29-117 (290)
253 3rfe_A Platelet glycoprotein I 95.4 0.012 4.2E-07 51.7 4.3 53 624-679 11-66 (130)
254 2i1q_A DNA repair and recombin 95.4 0.028 9.5E-07 58.2 7.8 90 211-301 97-213 (322)
255 1u94_A RECA protein, recombina 95.4 0.027 9.4E-07 58.8 7.7 83 212-301 63-150 (356)
256 2px0_A Flagellar biosynthesis 95.2 0.037 1.3E-06 56.4 7.8 24 211-234 104-127 (296)
257 1jr3_D DNA polymerase III, del 95.0 0.17 5.8E-06 52.7 12.7 157 212-395 18-184 (343)
258 4fs7_A Uncharacterized protein 95.0 0.022 7.6E-07 60.9 5.9 122 640-772 249-376 (394)
259 4gt6_A Cell surface protein; l 95.0 0.034 1.2E-06 59.4 7.3 79 596-678 286-367 (394)
260 4a74_A DNA repair and recombin 94.9 0.066 2.3E-06 52.1 8.6 45 212-256 25-73 (231)
261 1pzn_A RAD51, DNA repair and r 94.9 0.049 1.7E-06 56.9 7.8 91 211-302 130-241 (349)
262 1gvn_B Zeta; postsegregational 94.8 0.029 9.8E-07 56.9 5.8 42 192-234 14-55 (287)
263 3lw7_A Adenylate kinase relate 94.8 0.014 4.8E-07 54.2 3.2 20 213-232 2-21 (179)
264 1zp6_A Hypothetical protein AT 94.8 0.017 5.9E-07 54.5 3.8 24 212-235 9-32 (191)
265 3c8u_A Fructokinase; YP_612366 94.8 0.022 7.7E-07 54.7 4.6 38 193-234 7-44 (208)
266 1qhx_A CPT, protein (chloramph 94.8 0.014 4.9E-07 54.4 3.1 22 213-234 4-25 (178)
267 3kb2_A SPBC2 prophage-derived 94.7 0.015 5E-07 53.9 2.9 22 213-234 2-23 (173)
268 4fs7_A Uncharacterized protein 94.6 0.036 1.2E-06 59.2 6.3 96 596-698 274-372 (394)
269 1ly1_A Polynucleotide kinase; 94.6 0.017 5.9E-07 53.9 3.3 22 213-234 3-24 (181)
270 3tqc_A Pantothenate kinase; bi 94.6 0.034 1.2E-06 57.1 5.7 46 187-234 69-114 (321)
271 3bh0_A DNAB-like replicative h 94.5 0.13 4.3E-06 52.9 9.9 51 212-266 68-118 (315)
272 3vaa_A Shikimate kinase, SK; s 94.5 0.018 6.2E-07 54.9 3.1 22 213-234 26-47 (199)
273 1kgd_A CASK, peripheral plasma 94.4 0.022 7.4E-07 53.4 3.5 22 213-234 6-27 (180)
274 1ex7_A Guanylate kinase; subst 94.4 0.016 5.5E-07 54.4 2.5 22 213-234 2-23 (186)
275 3hws_A ATP-dependent CLP prote 94.4 0.03 1E-06 59.1 4.9 49 186-234 16-73 (363)
276 3lda_A DNA repair protein RAD5 94.4 0.079 2.7E-06 56.2 8.1 56 212-268 178-237 (400)
277 2p5t_B PEZT; postsegregational 94.4 0.032 1.1E-06 55.5 4.8 42 192-234 13-54 (253)
278 4gt6_A Cell surface protein; l 94.4 0.19 6.5E-06 53.5 11.3 124 639-772 260-388 (394)
279 3uie_A Adenylyl-sulfate kinase 94.4 0.026 8.9E-07 53.9 4.0 23 212-234 25-47 (200)
280 3ice_A Transcription terminati 94.3 0.033 1.1E-06 57.8 4.8 53 196-254 163-216 (422)
281 4h09_A Hypothetical leucine ri 94.3 0.11 3.8E-06 55.0 9.0 98 596-698 238-339 (379)
282 1kag_A SKI, shikimate kinase I 94.2 0.019 6.5E-07 53.2 2.6 22 213-234 5-26 (173)
283 2rhm_A Putative kinase; P-loop 94.2 0.026 8.7E-07 53.4 3.5 24 211-234 4-27 (193)
284 1knq_A Gluconate kinase; ALFA/ 94.2 0.033 1.1E-06 51.7 4.1 23 212-234 8-30 (175)
285 3trf_A Shikimate kinase, SK; a 94.1 0.022 7.7E-07 53.4 2.9 23 212-234 5-27 (185)
286 1ixz_A ATP-dependent metallopr 94.1 0.045 1.5E-06 54.4 5.2 51 185-235 16-72 (254)
287 2w0m_A SSO2452; RECA, SSPF, un 94.1 0.09 3.1E-06 51.1 7.4 22 213-234 24-45 (235)
288 3tau_A Guanylate kinase, GMP k 94.1 0.028 9.5E-07 54.0 3.5 24 212-235 8-31 (208)
289 4eun_A Thermoresistant glucoki 94.1 0.027 9.3E-07 53.7 3.4 23 212-234 29-51 (200)
290 3t61_A Gluconokinase; PSI-biol 94.0 0.023 7.8E-07 54.3 2.8 23 212-234 18-40 (202)
291 4gp7_A Metallophosphoesterase; 94.0 0.026 9E-07 52.3 3.1 23 212-234 9-31 (171)
292 3tr0_A Guanylate kinase, GMP k 94.0 0.031 1E-06 53.4 3.5 22 213-234 8-29 (205)
293 1nks_A Adenylate kinase; therm 93.9 0.028 9.4E-07 53.1 3.2 22 213-234 2-23 (194)
294 2qt1_A Nicotinamide riboside k 93.9 0.041 1.4E-06 52.7 4.3 24 211-234 20-43 (207)
295 3dm5_A SRP54, signal recogniti 93.9 0.16 5.4E-06 54.3 9.1 24 211-234 99-122 (443)
296 2ga8_A Hypothetical 39.9 kDa p 93.9 0.058 2E-06 55.7 5.6 45 188-234 2-46 (359)
297 3umf_A Adenylate kinase; rossm 93.9 0.038 1.3E-06 53.2 4.0 25 210-234 27-51 (217)
298 3a00_A Guanylate kinase, GMP k 93.9 0.025 8.6E-07 53.2 2.7 22 213-234 2-23 (186)
299 2bdt_A BH3686; alpha-beta prot 93.8 0.033 1.1E-06 52.5 3.5 22 213-234 3-24 (189)
300 1g8p_A Magnesium-chelatase 38 93.8 0.023 7.8E-07 59.6 2.5 44 185-234 24-67 (350)
301 1vma_A Cell division protein F 93.8 0.12 4.2E-06 52.6 7.9 89 211-302 103-196 (306)
302 1ukz_A Uridylate kinase; trans 93.8 0.039 1.3E-06 52.7 3.9 24 211-234 14-37 (203)
303 2xxa_A Signal recognition part 93.8 0.29 9.8E-06 52.5 11.0 42 193-234 78-122 (433)
304 3asz_A Uridine kinase; cytidin 93.7 0.036 1.2E-06 53.2 3.6 24 211-234 5-28 (211)
305 1uf9_A TT1252 protein; P-loop, 93.7 0.036 1.2E-06 52.9 3.5 25 210-234 6-30 (203)
306 3iij_A Coilin-interacting nucl 93.7 0.031 1E-06 52.2 3.0 23 212-234 11-33 (180)
307 2qor_A Guanylate kinase; phosp 93.7 0.028 9.5E-07 53.8 2.7 23 212-234 12-34 (204)
308 4h09_A Hypothetical leucine ri 93.7 0.11 3.8E-06 55.0 7.7 104 564-678 236-343 (379)
309 1tev_A UMP-CMP kinase; ploop, 93.7 0.034 1.2E-06 52.5 3.3 23 212-234 3-25 (196)
310 2j41_A Guanylate kinase; GMP, 93.7 0.037 1.3E-06 52.9 3.5 22 213-234 7-28 (207)
311 1y63_A LMAJ004144AAA protein; 93.7 0.038 1.3E-06 51.9 3.5 23 212-234 10-32 (184)
312 1ye8_A Protein THEP1, hypothet 93.6 0.036 1.2E-06 51.7 3.3 22 214-235 2-23 (178)
313 1kht_A Adenylate kinase; phosp 93.6 0.033 1.1E-06 52.4 3.0 22 213-234 4-25 (192)
314 2c95_A Adenylate kinase 1; tra 93.6 0.035 1.2E-06 52.5 3.1 23 212-234 9-31 (196)
315 2ze6_A Isopentenyl transferase 93.5 0.039 1.3E-06 54.8 3.5 22 213-234 2-23 (253)
316 1jjv_A Dephospho-COA kinase; P 93.5 0.042 1.4E-06 52.6 3.6 22 213-234 3-24 (206)
317 1sky_E F1-ATPase, F1-ATP synth 93.4 0.15 5E-06 54.8 7.9 40 214-254 153-192 (473)
318 1iy2_A ATP-dependent metallopr 93.4 0.069 2.4E-06 53.9 5.2 52 184-235 39-96 (278)
319 1qf9_A UMP/CMP kinase, protein 93.4 0.049 1.7E-06 51.3 3.9 23 212-234 6-28 (194)
320 1via_A Shikimate kinase; struc 93.4 0.03 1E-06 52.0 2.3 21 214-234 6-26 (175)
321 2yvu_A Probable adenylyl-sulfa 93.4 0.054 1.9E-06 50.8 4.1 25 211-235 12-36 (186)
322 1lvg_A Guanylate kinase, GMP k 93.4 0.033 1.1E-06 53.0 2.6 22 213-234 5-26 (198)
323 2jaq_A Deoxyguanosine kinase; 93.4 0.038 1.3E-06 52.7 3.0 21 214-234 2-22 (205)
324 3kl4_A SRP54, signal recogniti 93.4 0.23 7.9E-06 53.0 9.3 25 211-235 96-120 (433)
325 2cdn_A Adenylate kinase; phosp 93.4 0.045 1.5E-06 52.2 3.5 24 211-234 19-42 (201)
326 3a4m_A L-seryl-tRNA(SEC) kinas 93.4 0.046 1.6E-06 54.6 3.7 23 212-234 4-26 (260)
327 3ney_A 55 kDa erythrocyte memb 93.3 0.05 1.7E-06 51.4 3.6 24 211-234 18-41 (197)
328 1xjc_A MOBB protein homolog; s 93.3 0.045 1.5E-06 50.3 3.2 24 211-234 3-26 (169)
329 2bbw_A Adenylate kinase 4, AK4 93.3 0.043 1.5E-06 54.3 3.4 23 212-234 27-49 (246)
330 1zuh_A Shikimate kinase; alpha 93.3 0.042 1.4E-06 50.6 3.0 24 211-234 6-29 (168)
331 2if2_A Dephospho-COA kinase; a 93.2 0.04 1.4E-06 52.6 2.9 22 213-234 2-23 (204)
332 2plr_A DTMP kinase, probable t 93.2 0.047 1.6E-06 52.4 3.5 22 213-234 5-26 (213)
333 3cm0_A Adenylate kinase; ATP-b 93.2 0.051 1.7E-06 51.0 3.6 22 213-234 5-26 (186)
334 1um8_A ATP-dependent CLP prote 93.2 0.067 2.3E-06 56.7 4.9 22 213-234 73-94 (376)
335 1cke_A CK, MSSA, protein (cyti 93.2 0.044 1.5E-06 53.3 3.3 22 213-234 6-27 (227)
336 3aez_A Pantothenate kinase; tr 93.2 0.052 1.8E-06 55.7 3.9 24 211-234 89-112 (312)
337 1uj2_A Uridine-cytidine kinase 93.2 0.048 1.6E-06 54.1 3.5 25 210-234 20-44 (252)
338 3tlx_A Adenylate kinase 2; str 93.1 0.069 2.4E-06 52.6 4.6 24 211-234 28-51 (243)
339 2iyv_A Shikimate kinase, SK; t 93.1 0.033 1.1E-06 52.2 2.1 22 213-234 3-24 (184)
340 1pgv_A TMD-1, tropomodulin TMD 93.1 0.11 3.6E-06 49.0 5.5 82 596-678 39-136 (197)
341 1pgv_A TMD-1, tropomodulin TMD 93.1 0.082 2.8E-06 49.8 4.7 110 565-679 38-168 (197)
342 2bwj_A Adenylate kinase 5; pho 93.1 0.043 1.5E-06 52.1 2.9 22 213-234 13-34 (199)
343 4a1f_A DNAB helicase, replicat 93.0 0.22 7.5E-06 51.4 8.3 51 213-267 47-97 (338)
344 1znw_A Guanylate kinase, GMP k 93.0 0.053 1.8E-06 52.0 3.4 22 213-234 21-42 (207)
345 2jeo_A Uridine-cytidine kinase 93.0 0.06 2.1E-06 53.2 3.9 23 212-234 25-47 (245)
346 3cmu_A Protein RECA, recombina 93.0 0.13 4.6E-06 64.7 7.7 84 211-301 1426-1514(2050)
347 1e6c_A Shikimate kinase; phosp 93.0 0.038 1.3E-06 51.1 2.3 22 213-234 3-24 (173)
348 2vli_A Antibiotic resistance p 92.9 0.033 1.1E-06 52.1 1.8 23 212-234 5-27 (183)
349 2grj_A Dephospho-COA kinase; T 92.9 0.06 2E-06 50.8 3.5 24 211-234 11-34 (192)
350 1htw_A HI0065; nucleotide-bind 92.9 0.068 2.3E-06 48.6 3.8 22 213-234 34-55 (158)
351 2pez_A Bifunctional 3'-phospho 92.9 0.064 2.2E-06 50.0 3.7 23 212-234 5-27 (179)
352 1aky_A Adenylate kinase; ATP:A 92.9 0.051 1.8E-06 52.6 3.1 23 212-234 4-26 (220)
353 3cf2_A TER ATPase, transitiona 92.9 0.22 7.4E-06 57.5 8.7 99 183-302 475-580 (806)
354 3jvv_A Twitching mobility prot 92.8 0.063 2.2E-06 56.1 3.9 111 213-336 124-235 (356)
355 1rj9_A FTSY, signal recognitio 92.8 0.063 2.2E-06 54.8 3.8 24 211-234 101-124 (304)
356 1nn5_A Similar to deoxythymidy 92.8 0.055 1.9E-06 52.1 3.2 23 212-234 9-31 (215)
357 1z6g_A Guanylate kinase; struc 92.8 0.049 1.7E-06 52.7 2.8 22 213-234 24-45 (218)
358 2pt5_A Shikimate kinase, SK; a 92.8 0.055 1.9E-06 49.7 3.0 21 214-234 2-22 (168)
359 2wwf_A Thymidilate kinase, put 92.7 0.054 1.9E-06 52.0 3.1 23 212-234 10-32 (212)
360 1s96_A Guanylate kinase, GMP k 92.7 0.061 2.1E-06 52.0 3.4 23 212-234 16-38 (219)
361 2pbr_A DTMP kinase, thymidylat 92.7 0.056 1.9E-06 51.0 3.1 21 214-234 2-22 (195)
362 1tue_A Replication protein E1; 92.7 0.084 2.9E-06 49.8 4.1 38 193-235 44-81 (212)
363 2f6r_A COA synthase, bifunctio 92.7 0.07 2.4E-06 53.9 3.9 23 211-233 74-96 (281)
364 1fx0_B ATP synthase beta chain 92.6 0.34 1.2E-05 52.1 9.2 52 213-265 166-218 (498)
365 2hf9_A Probable hydrogenase ni 92.5 0.1 3.6E-06 50.5 4.9 25 211-235 37-61 (226)
366 3zvl_A Bifunctional polynucleo 92.5 0.32 1.1E-05 52.1 9.1 24 211-234 257-280 (416)
367 3fwy_A Light-independent proto 92.5 0.071 2.4E-06 54.7 3.7 25 210-234 46-70 (314)
368 4e22_A Cytidylate kinase; P-lo 92.4 0.07 2.4E-06 52.9 3.5 22 213-234 28-49 (252)
369 1zd8_A GTP:AMP phosphotransfer 92.4 0.064 2.2E-06 52.2 3.1 23 212-234 7-29 (227)
370 1sq5_A Pantothenate kinase; P- 92.4 0.15 5.1E-06 52.2 6.0 24 211-234 79-102 (308)
371 2z0h_A DTMP kinase, thymidylat 92.3 0.066 2.2E-06 50.7 3.1 21 214-234 2-22 (197)
372 2ffh_A Protein (FFH); SRP54, s 92.3 0.28 9.4E-06 52.3 8.1 23 212-234 98-120 (425)
373 2v54_A DTMP kinase, thymidylat 92.3 0.068 2.3E-06 50.9 3.1 22 213-234 5-26 (204)
374 2ged_A SR-beta, signal recogni 92.3 0.11 3.7E-06 48.8 4.5 26 210-235 46-71 (193)
375 1m7g_A Adenylylsulfate kinase; 92.3 0.079 2.7E-06 50.9 3.5 23 212-234 25-47 (211)
376 1zak_A Adenylate kinase; ATP:A 92.2 0.059 2E-06 52.3 2.6 23 212-234 5-27 (222)
377 3fb4_A Adenylate kinase; psych 92.2 0.068 2.3E-06 51.5 3.1 21 214-234 2-22 (216)
378 2wsm_A Hydrogenase expression/ 92.2 0.1 3.6E-06 50.3 4.3 40 190-235 14-53 (221)
379 3l0o_A Transcription terminati 92.0 0.21 7.1E-06 51.9 6.4 36 195-235 163-198 (427)
380 3dl0_A Adenylate kinase; phosp 92.0 0.074 2.5E-06 51.3 3.1 21 214-234 2-22 (216)
381 1gtv_A TMK, thymidylate kinase 92.0 0.041 1.4E-06 52.9 1.2 21 214-234 2-22 (214)
382 1vht_A Dephospho-COA kinase; s 92.0 0.094 3.2E-06 50.6 3.8 23 212-234 4-26 (218)
383 2ehv_A Hypothetical protein PH 91.9 0.081 2.8E-06 52.2 3.3 22 213-234 31-52 (251)
384 1g41_A Heat shock protein HSLU 91.9 0.15 5.3E-06 54.5 5.5 50 185-234 15-72 (444)
385 2ck3_D ATP synthase subunit be 91.8 0.35 1.2E-05 51.8 8.1 65 196-266 142-207 (482)
386 2i3b_A HCR-ntpase, human cance 91.8 0.076 2.6E-06 50.0 2.7 22 214-235 3-24 (189)
387 2j37_W Signal recognition part 91.8 1.2 4E-05 48.7 12.5 41 194-234 80-123 (504)
388 3k1j_A LON protease, ATP-depen 91.8 0.11 3.8E-06 58.8 4.6 43 185-235 41-83 (604)
389 3be4_A Adenylate kinase; malar 91.8 0.069 2.3E-06 51.6 2.5 22 213-234 6-27 (217)
390 3lnc_A Guanylate kinase, GMP k 91.8 0.057 2E-06 52.7 1.9 22 213-234 28-50 (231)
391 2onk_A Molybdate/tungstate ABC 91.8 0.089 3E-06 51.6 3.3 22 213-234 25-46 (240)
392 1ls1_A Signal recognition part 91.7 0.39 1.3E-05 48.7 8.2 24 212-235 98-121 (295)
393 2f1r_A Molybdopterin-guanine d 91.7 0.058 2E-06 49.8 1.8 22 213-234 3-24 (171)
394 3b9q_A Chloroplast SRP recepto 91.7 0.1 3.5E-06 53.1 3.8 24 211-234 99-122 (302)
395 3tif_A Uncharacterized ABC tra 91.7 0.089 3.1E-06 51.5 3.2 22 213-234 32-53 (235)
396 1np6_A Molybdopterin-guanine d 91.6 0.1 3.5E-06 48.3 3.4 25 211-235 5-29 (174)
397 3sr0_A Adenylate kinase; phosp 91.6 0.09 3.1E-06 50.2 3.1 21 214-234 2-22 (206)
398 2pcj_A ABC transporter, lipopr 91.6 0.09 3.1E-06 51.1 3.1 22 213-234 31-52 (224)
399 3gfo_A Cobalt import ATP-bindi 91.5 0.13 4.4E-06 51.5 4.2 22 213-234 35-56 (275)
400 3e70_C DPA, signal recognition 91.5 0.12 4E-06 53.3 4.0 24 211-234 128-151 (328)
401 3nwj_A ATSK2; P loop, shikimat 91.4 0.081 2.8E-06 52.2 2.6 22 213-234 49-70 (250)
402 4akg_A Glutathione S-transfera 91.3 1.6 5.6E-05 57.1 15.0 76 213-301 1268-1345(2695)
403 2qe7_A ATP synthase subunit al 91.3 0.23 7.7E-06 53.5 6.0 85 213-301 163-263 (502)
404 3d3q_A TRNA delta(2)-isopenten 91.3 0.11 3.8E-06 53.4 3.5 22 213-234 8-29 (340)
405 3r20_A Cytidylate kinase; stru 91.3 0.11 3.7E-06 50.6 3.2 23 212-234 9-31 (233)
406 3p32_A Probable GTPase RV1496/ 91.3 0.21 7E-06 52.4 5.7 37 194-234 65-101 (355)
407 3ake_A Cytidylate kinase; CMP 91.3 0.1 3.5E-06 49.8 3.1 21 214-234 4-24 (208)
408 4g1u_C Hemin import ATP-bindin 91.3 0.16 5.5E-06 50.7 4.6 22 213-234 38-59 (266)
409 3a8t_A Adenylate isopentenyltr 91.2 0.13 4.6E-06 52.7 4.0 23 212-234 40-62 (339)
410 1b0u_A Histidine permease; ABC 91.1 0.11 3.7E-06 51.8 3.2 22 213-234 33-54 (262)
411 2cbz_A Multidrug resistance-as 91.0 0.12 4.2E-06 50.6 3.4 23 213-235 32-54 (237)
412 2xb4_A Adenylate kinase; ATP-b 91.0 0.11 3.7E-06 50.4 3.0 21 214-234 2-22 (223)
413 1ak2_A Adenylate kinase isoenz 91.0 0.12 4E-06 50.6 3.3 23 212-234 16-38 (233)
414 3b85_A Phosphate starvation-in 91.0 0.086 2.9E-06 50.5 2.2 22 213-234 23-44 (208)
415 2wji_A Ferrous iron transport 91.0 0.14 4.9E-06 46.7 3.7 23 213-235 4-26 (165)
416 1e4v_A Adenylate kinase; trans 90.9 0.11 3.7E-06 50.0 3.0 21 214-234 2-22 (214)
417 2zej_A Dardarin, leucine-rich 90.9 0.11 3.9E-06 48.4 3.0 22 214-235 4-25 (184)
418 1ji0_A ABC transporter; ATP bi 90.9 0.12 4E-06 50.8 3.2 22 213-234 33-54 (240)
419 3exa_A TRNA delta(2)-isopenten 90.9 0.13 4.5E-06 52.0 3.5 23 212-234 3-25 (322)
420 1g6h_A High-affinity branched- 90.8 0.12 4.1E-06 51.4 3.2 22 213-234 34-55 (257)
421 2r6a_A DNAB helicase, replicat 90.8 0.56 1.9E-05 50.8 8.9 49 213-264 204-252 (454)
422 1yrb_A ATP(GTP)binding protein 90.8 0.16 5.4E-06 50.5 4.1 25 210-234 12-36 (262)
423 3crm_A TRNA delta(2)-isopenten 90.8 0.12 4.2E-06 52.7 3.3 23 212-234 5-27 (323)
424 1j8m_F SRP54, signal recogniti 90.8 0.46 1.6E-05 48.2 7.5 23 212-234 98-120 (297)
425 1sgw_A Putative ABC transporte 90.8 0.1 3.5E-06 50.1 2.6 22 213-234 36-57 (214)
426 3hjn_A DTMP kinase, thymidylat 90.8 0.33 1.1E-05 45.9 6.1 22 214-235 2-23 (197)
427 4eaq_A DTMP kinase, thymidylat 90.8 0.23 7.9E-06 48.3 5.2 25 211-235 25-49 (229)
428 2og2_A Putative signal recogni 90.8 0.14 4.9E-06 53.3 3.8 24 211-234 156-179 (359)
429 2d2e_A SUFC protein; ABC-ATPas 90.7 0.13 4.4E-06 50.9 3.3 22 213-234 30-51 (250)
430 1ltq_A Polynucleotide kinase; 90.7 0.13 4.3E-06 52.6 3.3 22 213-234 3-24 (301)
431 2olj_A Amino acid ABC transpor 90.7 0.13 4.6E-06 51.1 3.4 22 213-234 51-72 (263)
432 1mv5_A LMRA, multidrug resista 90.7 0.15 5.1E-06 50.2 3.7 22 213-234 29-50 (243)
433 2pze_A Cystic fibrosis transme 90.7 0.13 4.4E-06 50.2 3.2 22 213-234 35-56 (229)
434 3foz_A TRNA delta(2)-isopenten 90.7 0.16 5.3E-06 51.4 3.8 24 211-234 9-32 (316)
435 2ff7_A Alpha-hemolysin translo 90.6 0.13 4.4E-06 50.8 3.2 22 213-234 36-57 (247)
436 2r9v_A ATP synthase subunit al 90.6 0.34 1.2E-05 52.2 6.6 85 213-301 176-276 (515)
437 1vpl_A ABC transporter, ATP-bi 90.6 0.13 4.5E-06 51.0 3.2 22 213-234 42-63 (256)
438 1oix_A RAS-related protein RAB 90.6 0.14 4.6E-06 48.3 3.2 24 212-235 29-52 (191)
439 3cmu_A Protein RECA, recombina 90.5 0.38 1.3E-05 60.7 7.9 86 211-303 382-472 (2050)
440 2zu0_C Probable ATP-dependent 90.5 0.13 4.6E-06 51.3 3.3 22 213-234 47-68 (267)
441 2vp4_A Deoxynucleoside kinase; 90.5 0.15 5E-06 49.7 3.5 24 211-234 19-42 (230)
442 1a7j_A Phosphoribulokinase; tr 90.5 0.068 2.3E-06 54.2 1.1 24 211-234 4-27 (290)
443 2wjg_A FEOB, ferrous iron tran 90.4 0.21 7.1E-06 46.6 4.3 25 211-235 6-30 (188)
444 3e1s_A Exodeoxyribonuclease V, 90.4 0.34 1.2E-05 54.2 6.6 105 213-331 205-315 (574)
445 2ixe_A Antigen peptide transpo 90.4 0.14 4.8E-06 51.3 3.2 22 213-234 46-67 (271)
446 2qi9_C Vitamin B12 import ATP- 90.3 0.14 4.8E-06 50.5 3.2 22 213-234 27-48 (249)
447 2f9l_A RAB11B, member RAS onco 90.2 0.14 4.9E-06 48.4 3.0 24 212-235 5-28 (199)
448 3vr4_D V-type sodium ATPase su 90.2 0.22 7.6E-06 53.0 4.7 87 214-301 153-257 (465)
449 2ghi_A Transport protein; mult 90.2 0.16 5.3E-06 50.6 3.4 22 213-234 47-68 (260)
450 1zu4_A FTSY; GTPase, signal re 90.2 0.18 6E-06 51.9 3.8 24 211-234 104-127 (320)
451 2nq2_C Hypothetical ABC transp 90.2 0.15 5.1E-06 50.5 3.1 22 213-234 32-53 (253)
452 2yz2_A Putative ABC transporte 90.1 0.15 5.1E-06 50.9 3.2 22 213-234 34-55 (266)
453 2dyk_A GTP-binding protein; GT 90.1 0.18 6E-06 45.6 3.4 23 213-235 2-24 (161)
454 2ihy_A ABC transporter, ATP-bi 90.1 0.15 5.1E-06 51.3 3.2 22 213-234 48-69 (279)
455 2v9p_A Replication protein E1; 90.1 0.16 5.5E-06 51.6 3.4 22 213-234 127-148 (305)
456 3cmw_A Protein RECA, recombina 90.1 0.36 1.2E-05 60.2 7.0 82 213-301 384-470 (1706)
457 1q57_A DNA primase/helicase; d 90.0 0.88 3E-05 50.1 9.6 53 212-267 242-294 (503)
458 2eyu_A Twitching motility prot 90.0 0.19 6.5E-06 50.0 3.8 22 213-234 26-47 (261)
459 2qmh_A HPR kinase/phosphorylas 90.0 0.17 5.7E-06 47.5 3.1 22 213-234 35-56 (205)
460 2dr3_A UPF0273 protein PH0284; 89.9 0.21 7.3E-06 48.9 4.2 38 213-252 24-61 (247)
461 3mfy_A V-type ATP synthase alp 89.9 0.44 1.5E-05 51.8 6.7 57 197-262 217-274 (588)
462 2lkc_A Translation initiation 89.8 0.24 8.3E-06 45.5 4.2 25 211-235 7-31 (178)
463 1svm_A Large T antigen; AAA+ f 89.8 0.17 6E-06 53.1 3.5 23 212-234 169-191 (377)
464 2yhs_A FTSY, cell division pro 89.8 0.19 6.5E-06 54.3 3.8 25 210-234 291-315 (503)
465 3llm_A ATP-dependent RNA helic 89.7 0.48 1.7E-05 46.1 6.5 90 213-303 77-187 (235)
466 1nlf_A Regulatory protein REPA 89.7 0.15 5.3E-06 51.3 2.9 22 213-234 31-52 (279)
467 1q3t_A Cytidylate kinase; nucl 89.7 0.19 6.5E-06 49.1 3.5 25 210-234 14-38 (236)
468 2v3c_C SRP54, signal recogniti 89.7 0.2 6.9E-06 53.7 3.9 42 194-235 78-122 (432)
469 2q6t_A DNAB replication FORK h 89.7 1 3.5E-05 48.6 9.6 52 212-266 200-251 (444)
470 3oaa_A ATP synthase subunit al 89.7 0.6 2.1E-05 50.1 7.5 82 214-301 164-263 (513)
471 3sop_A Neuronal-specific septi 89.6 0.17 5.9E-06 50.6 3.2 21 214-234 4-24 (270)
472 1cr0_A DNA primase/helicase; R 89.6 0.17 5.8E-06 51.4 3.2 23 213-235 36-58 (296)
473 3gqb_B V-type ATP synthase bet 89.4 0.18 6E-06 53.7 3.2 87 214-301 149-260 (464)
474 4edh_A DTMP kinase, thymidylat 89.4 0.55 1.9E-05 45.0 6.4 24 212-235 6-29 (213)
475 2ocp_A DGK, deoxyguanosine kin 89.4 0.2 6.7E-06 49.2 3.4 23 212-234 2-24 (241)
476 2ce2_X GTPase HRAS; signaling 89.3 0.18 6.1E-06 45.6 2.8 22 214-235 5-26 (166)
477 3ld9_A DTMP kinase, thymidylat 89.3 0.49 1.7E-05 45.6 6.0 25 211-235 20-44 (223)
478 1u0j_A DNA replication protein 89.3 0.35 1.2E-05 47.7 5.0 37 194-234 90-126 (267)
479 2pjz_A Hypothetical protein ST 89.2 0.19 6.6E-06 49.9 3.2 22 213-234 31-52 (263)
480 2gj8_A MNME, tRNA modification 89.1 0.2 7E-06 46.1 3.0 23 213-235 5-27 (172)
481 1svi_A GTP-binding protein YSX 88.9 0.26 9E-06 46.2 3.8 25 211-235 22-46 (195)
482 2nzj_A GTP-binding protein REM 88.9 0.28 9.6E-06 44.9 3.9 24 212-235 4-27 (175)
483 3q85_A GTP-binding protein REM 88.9 0.22 7.5E-06 45.3 3.1 22 213-234 3-24 (169)
484 1z2a_A RAS-related protein RAB 88.9 0.26 8.8E-06 44.7 3.6 24 212-235 5-28 (168)
485 3q72_A GTP-binding protein RAD 88.8 0.2 6.8E-06 45.5 2.8 22 214-235 4-25 (166)
486 2erx_A GTP-binding protein DI- 88.8 0.22 7.7E-06 45.3 3.1 23 213-235 4-26 (172)
487 2c61_A A-type ATP synthase non 88.8 0.23 7.9E-06 53.2 3.5 88 214-301 154-258 (469)
488 2ck3_A ATP synthase subunit al 88.7 0.49 1.7E-05 51.0 6.0 100 197-301 152-271 (510)
489 1z08_A RAS-related protein RAB 88.7 0.24 8.1E-06 45.1 3.2 24 212-235 6-29 (170)
490 3nh6_A ATP-binding cassette SU 88.7 0.19 6.6E-06 51.1 2.8 22 213-234 81-102 (306)
491 1fzq_A ADP-ribosylation factor 88.7 0.28 9.7E-06 45.5 3.8 25 211-235 15-39 (181)
492 1u8z_A RAS-related protein RAL 88.6 0.22 7.6E-06 45.1 2.9 23 213-235 5-27 (168)
493 2hxs_A RAB-26, RAS-related pro 88.5 0.36 1.2E-05 44.3 4.4 25 211-235 5-29 (178)
494 1nij_A Hypothetical protein YJ 88.5 0.21 7E-06 51.4 2.9 25 211-235 3-27 (318)
495 3fvq_A Fe(3+) IONS import ATP- 88.5 0.23 7.8E-06 51.6 3.2 22 213-234 31-52 (359)
496 2bbs_A Cystic fibrosis transme 88.5 0.24 8.2E-06 50.0 3.3 23 213-235 65-87 (290)
497 3end_A Light-independent proto 88.5 0.27 9.1E-06 50.3 3.7 25 210-234 39-63 (307)
498 1nrj_B SR-beta, signal recogni 88.5 0.26 8.7E-06 47.3 3.4 25 211-235 11-35 (218)
499 3con_A GTPase NRAS; structural 88.5 0.23 8E-06 46.3 3.0 23 213-235 22-44 (190)
500 2www_A Methylmalonic aciduria 88.4 0.27 9.4E-06 51.2 3.8 24 211-234 73-96 (349)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=8e-48 Score=437.25 Aligned_cols=317 Identities=16% Similarity=0.224 Sum_probs=257.9
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc--ccccccccCceEEEEeCCCC--CHHHHHHHH
Q 040735 188 YGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ--DDRVQRHFQIKSWTCVFEDF--DVFRVSKLI 263 (779)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i 263 (779)
|||+.++++|.++|.... ++..++|+|+||||+||||||+++|+ +.++..+|+.++||++++.. +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 24579999999999999999999998 67899999999999999885 889999999
Q ss_pred HHHhhcCCC------CCcccHHHHHHHHHHHhCCC-eEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhhHh
Q 040735 264 LNSIASDQC------TDKDDLNLLQEKLKKQLSGK-KFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGVAE 336 (779)
Q Consensus 264 l~~l~~~~~------~~~~~~~~~~~~l~~~l~~k-~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~ 336 (779)
+.+++.... ....+.+.+...+++.|+++ ||||||||||+.....|... +||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHHH
Confidence 999986521 12335667889999999996 99999999998532234322 6899999999999998
Q ss_pred hhc-ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhhh
Q 040735 337 TMR-AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEFVLNAN 415 (779)
Q Consensus 337 ~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~~l~~~ 415 (779)
.++ ...+|+|++|+.++||+||.+.++... .++.+.+++++|+++|+|+||||+++|+.|+.+ ++ .|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHH
Confidence 776 336799999999999999999987643 246788999999999999999999999999876 32 333444443
Q ss_pred hcccccCCCCchHHHHHhhcCCChhhHhHhh-----------hhccCCCCCccCHHHHHHHHHHc--CCccCCCCCCCHH
Q 040735 416 IWDLQEDKCDIVPALRVSYHFLPPQLKQCFA-----------YFSLFPKDYDFQEEEIILLWTAE--GFLDQEYNGRKME 482 (779)
Q Consensus 416 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~ls~fp~~~~i~~~~li~~W~ae--g~i~~~~~~~~~e 482 (779)
.+.. ....+..+|.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.....+.+.+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3322 2456889999999999999999999 999999999999 8899999 9998754466778
Q ss_pred HHHHHHHHHHhhCccccccCC-CCCcEEecccHHHHHHHhhccceE
Q 040735 483 DLGREFVRELHSRSLVQQSSK-NASRFVMHDLINDLSRWAAGELYF 527 (779)
Q Consensus 483 ~~~~~~l~~L~~~~ll~~~~~-~~~~~~~Hdlv~~~a~~~~~~~~~ 527 (779)
++++ ||++|+++||+++... ...+|+|||+||+||+.++.++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 9999999999998654 346899999999999998877654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.8e-39 Score=368.52 Aligned_cols=286 Identities=21% Similarity=0.289 Sum_probs=231.0
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCc-eEEEEeCCCCCHHHHHHHHHH
Q 040735 187 VYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQI-KSWTCVFEDFDVFRVSKLILN 265 (779)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~il~ 265 (779)
.|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.++..+|+. ++|+++++.++...++..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999997532 3689999999999999999999988788899986 899999999998888888877
Q ss_pred HhhcCC---CCC-------cccHHHHHHHHHHHh---CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch
Q 040735 266 SIASDQ---CTD-------KDDLNLLQEKLKKQL---SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ 332 (779)
Q Consensus 266 ~l~~~~---~~~-------~~~~~~~~~~l~~~l---~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 332 (779)
.+.... ... ..+.+.+.+.+++.| .++|+||||||||+ ...|+.+. +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHHH-------SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhhC-------CCeEEEEeccCh
Confidence 544321 101 123455667777766 78999999999998 46676542 589999999999
Q ss_pred hhHhhhcccccccCC------CCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcCCC-Ch
Q 040735 333 GVAETMRAVSTKTLK------ELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKD-DL 405 (779)
Q Consensus 333 ~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~-~~ 405 (779)
.++..+.....+.++ +|+.+|||+||++.. +.. . .++..+| |+|+||||+++|+.|+.+. +.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 988655444467777 999999999999883 221 1 1233333 9999999999999999874 67
Q ss_pred hHHHHHHhhhhcccccCCCCchHHHHHhhcCCChhh-HhHhhhhccCCCCCccCHHHHHHHHHHcCCccCCCCCCCHHHH
Q 040735 406 NDWEFVLNANIWDLQEDKCDIVPALRVSYHFLPPQL-KQCFAYFSLFPKDYDFQEEEIILLWTAEGFLDQEYNGRKMEDL 484 (779)
Q Consensus 406 ~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~ls~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~ 484 (779)
..|... ....+..+|.+||+.||++. |.||+|||+||+++.|+.+.++.+|+++| ++.
T Consensus 345 eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eed 403 (1221)
T 1vt4_I 345 DNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSD 403 (1221)
T ss_dssp HHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHH
T ss_pred HHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHH
Confidence 788653 23468999999999999999 99999999999999999999999998876 145
Q ss_pred HHHHHHHHhhCccccccCCCCCcEEecccHHHHHH
Q 040735 485 GREFVRELHSRSLVQQSSKNASRFVMHDLINDLSR 519 (779)
Q Consensus 485 ~~~~l~~L~~~~ll~~~~~~~~~~~~Hdlv~~~a~ 519 (779)
++.+|++|+++|||+... +..+|+|||++++++.
T Consensus 404 Ae~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHhc
Confidence 889999999999999842 4568999999999663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-37 Score=392.05 Aligned_cols=312 Identities=21% Similarity=0.331 Sum_probs=249.0
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-cccc-CceEEEEeCCCCC--HH
Q 040735 182 VNEAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRV-QRHF-QIKSWTCVFEDFD--VF 257 (779)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~--~~ 257 (779)
.....||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997543 35799999999999999999999997543 4556 4667999988544 34
Q ss_pred HHHHHHHHHhhcCCC---CCcccHHHHHHHHHHHhCCC--eEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch
Q 040735 258 RVSKLILNSIASDQC---TDKDDLNLLQEKLKKQLSGK--KFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ 332 (779)
Q Consensus 258 ~~~~~il~~l~~~~~---~~~~~~~~~~~~l~~~l~~k--~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 332 (779)
..+..++..+..... ....+.+.+.+.++..+.++ |+||||||+|+. .+|..+ .+||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCH
Confidence 446667777765432 13467788999999999877 999999999864 455443 4689999999999
Q ss_pred hhHhh-hcccccccCCC-CChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHH
Q 040735 333 GVAET-MRAVSTKTLKE-LSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEF 410 (779)
Q Consensus 333 ~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~ 410 (779)
.++.. +.....+.+.+ |+.+++++||...++.. .+...+.+++|+++|+|+||||+++|++|+.++ ..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 98854 44557889996 99999999999888432 233446789999999999999999999998875 35777
Q ss_pred HHhhhhccccc--------CCCCchHHHHHhhcCCChhhHhHhhhhccCCCCCccCHHHHHHHHHHcCCccCCCCCCCHH
Q 040735 411 VLNANIWDLQE--------DKCDIVPALRVSYHFLPPQLKQCFAYFSLFPKDYDFQEEEIILLWTAEGFLDQEYNGRKME 482 (779)
Q Consensus 411 ~l~~~~~~~~~--------~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e 482 (779)
.++........ ....+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ +
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~ 408 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------T 408 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------H
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------H
Confidence 66654322211 113588999999999999999999999999999999999999999654 4
Q ss_pred HHHHHHHHHHhhCccccccCCC-CCcEEecccHHHHHHHhhccc
Q 040735 483 DLGREFVRELHSRSLVQQSSKN-ASRFVMHDLINDLSRWAAGEL 525 (779)
Q Consensus 483 ~~~~~~l~~L~~~~ll~~~~~~-~~~~~~Hdlv~~~a~~~~~~~ 525 (779)
+.+++++++|+++||++....+ ..+|+||+++|+|++..+.++
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 7789999999999999976532 346999999999999987765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=7.3e-35 Score=336.00 Aligned_cols=306 Identities=23% Similarity=0.354 Sum_probs=234.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-ccccC-ceEEEEeCCCCCHHHHHH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRV-QRHFQ-IKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~~~~~~~~~~~~~ 261 (779)
...||||+.++++|.++|.... ++.++|+|+||||+||||||.+++++.++ ..+|+ .++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 3469999999999999997532 35689999999999999999999997665 78895 7899999876 3333333
Q ss_pred HH---HHHhhcCC---CCCcccHHHHHHHHHHHhCC--CeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchh
Q 040735 262 LI---LNSIASDQ---CTDKDDLNLLQEKLKKQLSG--KKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQG 333 (779)
Q Consensus 262 ~i---l~~l~~~~---~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 333 (779)
.+ +..++... .....+.+.+...++..+.+ +++||||||+|+. ..+.. + .+|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~~----l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLKA----F---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHHT----T---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHHH----h---cCCCeEEEECCCcH
Confidence 33 34444211 11345677788888888865 7899999999863 33332 2 45899999999998
Q ss_pred hHhhhcccccccC---CCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHH
Q 040735 334 VAETMRAVSTKTL---KELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEF 410 (779)
Q Consensus 334 v~~~~~~~~~~~l---~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~ 410 (779)
++..+. ...+.+ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||+++|+.++... ..|..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~ 340 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY 340 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence 876543 233443 6899999999999987542 122235688999999999999999999998774 36777
Q ss_pred HHhhhhcccc--------cCCCCchHHHHHhhcCCChhhHhHhhhhccCCCCCccCHHHHHHHHHHcCCccCCCCCCCHH
Q 040735 411 VLNANIWDLQ--------EDKCDIVPALRVSYHFLPPQLKQCFAYFSLFPKDYDFQEEEIILLWTAEGFLDQEYNGRKME 482 (779)
Q Consensus 411 ~l~~~~~~~~--------~~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e 482 (779)
.+........ .....+..++..||+.||++.|.||++||+||+++.|+.+.++..|.++ .
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~ 408 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------T 408 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------H
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------H
Confidence 7665432211 1123578899999999999999999999999999999999999999543 3
Q ss_pred HHHHHHHHHHhhCccccccCC-CCCcEEecccHHHHHHHhhc
Q 040735 483 DLGREFVRELHSRSLVQQSSK-NASRFVMHDLINDLSRWAAG 523 (779)
Q Consensus 483 ~~~~~~l~~L~~~~ll~~~~~-~~~~~~~Hdlv~~~a~~~~~ 523 (779)
+.+..++++|+++||++.... ...+|+||++++++++....
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 457889999999999986543 23579999999999998743
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=1e-18 Score=184.97 Aligned_cols=222 Identities=15% Similarity=0.118 Sum_probs=171.1
Q ss_pred CCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCC
Q 040735 542 SQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLK 621 (779)
Q Consensus 542 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~ 621 (779)
...++.+.+.++..... ...+..+++|+.|.+.++. +. .+|..+.++++|++|+|++|.++.+|..+++++
T Consensus 80 ~~~l~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~n~------l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQF--PDQAFRLSHLQHMTIDAAG------LM-ELPDTMQQFAGLETLTLARNPLRALPASIASLN 150 (328)
T ss_dssp STTCCEEEEESSCCSSC--CSCGGGGTTCSEEEEESSC------CC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCT
T ss_pred ccceeEEEccCCCchhc--ChhhhhCCCCCEEECCCCC------cc-chhHHHhccCCCCEEECCCCccccCcHHHhcCc
Confidence 45678888887765422 3446778999999988765 44 567777789999999999999999999999999
Q ss_pred ccceEeccccccc-cccccccc---------ccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCC
Q 040735 622 HLRFLNLSRTNIQ-ILPESINS---------LYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKL 691 (779)
Q Consensus 622 ~L~~L~l~~n~i~-~lp~~~~~---------L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L 691 (779)
+|++|+|++|++. .+|..++. +++|++|++++| .+..+|..++++++|++|++++|. +..+|..++.+
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l 228 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHL 228 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGC
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccC
Confidence 9999999997544 78887765 999999999999 777999999999999999999999 66888889999
Q ss_pred CCCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHH-----HhccCCCCCCCCe
Q 040735 692 TCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIR-----VLDMLKPHQKLEE 766 (779)
Q Consensus 692 ~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~-----~l~~l~~~~~L~~ 766 (779)
++|++|++..+.. .+.....+.++++|+ .|.+.++......+. .+..+++|+.|+...+ .++.+..+++|+.
T Consensus 229 ~~L~~L~Ls~n~~-~~~~p~~~~~l~~L~-~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 229 PKLEELDLRGCTA-LRNYPPIFGGRAPLK-RLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp TTCCEEECTTCTT-CCBCCCCTTCCCCCC-EEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred CCCCEEECcCCcc-hhhhHHHhcCCCCCC-EEECCCCCchhhcch-hhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 9999998665443 334455677888888 888887666554443 4578888888855543 2344555788888
Q ss_pred EEEeecCCCCC
Q 040735 767 LTIAGYGGTKF 777 (779)
Q Consensus 767 L~l~~~~~~~~ 777 (779)
+.+..+....+
T Consensus 306 l~l~~~~~~~l 316 (328)
T 4fcg_A 306 ILVPPHLQAQL 316 (328)
T ss_dssp EECCGGGSCC-
T ss_pred EeCCHHHHHHH
Confidence 88877655443
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=3.1e-18 Score=181.33 Aligned_cols=199 Identities=22% Similarity=0.240 Sum_probs=156.5
Q ss_pred CCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCC-ccCccccC-
Q 040735 542 SQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHIS-KLPNEIGN- 619 (779)
Q Consensus 542 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~- 619 (779)
...++++.+.++.+. .....+..+++|+.|.+.++. +. .+|..+.++++|++|++++|.+. .+|..++.
T Consensus 103 l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~------l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNP------LR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp GTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCC------CC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred CCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCc------cc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence 346788888877654 223457788999999988765 44 56777779999999999997554 67776654
Q ss_pred --------CCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCC
Q 040735 620 --------LKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKL 691 (779)
Q Consensus 620 --------l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L 691 (779)
+++|++|+|++|.++.+|..++++++|++|++++| .+..+|..++.+++|++|++++|...+.+|..++.+
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 99999999999999999999999999999999999 777888889999999999999988888899889999
Q ss_pred CCCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHH
Q 040735 692 TCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIR 753 (779)
Q Consensus 692 ~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~ 753 (779)
++|++|++..+.. .+.....+.++++|+ .|++.++.....++ ..+.+|++++.+....+
T Consensus 253 ~~L~~L~L~~n~~-~~~~p~~~~~l~~L~-~L~L~~n~~~~~iP-~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 253 APLKRLILKDCSN-LLTLPLDIHRLTQLE-KLDLRGCVNLSRLP-SLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCEEECTTCTT-CCBCCTTGGGCTTCC-EEECTTCTTCCCCC-GGGGGSCTTCEEECCGG
T ss_pred CCCCEEECCCCCc-hhhcchhhhcCCCCC-EEeCCCCCchhhcc-HHHhhccCceEEeCCHH
Confidence 9999997655443 344555678888888 89998876666554 45677888777754433
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=5.2e-18 Score=178.47 Aligned_cols=222 Identities=15% Similarity=0.129 Sum_probs=141.4
Q ss_pred CceeEEEEEecccccc-cccccccccccceEecccC-cccccccccchHhhhhhcCCCCccEEEecCCCCC-ccCccccC
Q 040735 543 QSLRHFSYIHGEYDGK-KRLKSVSDVERLRTFLPVN-LSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHIS-KLPNEIGN 619 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~-~~~~~~~~~~~Lr~l~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~ 619 (779)
..++++.+.++..... .....+..+++|+.|.+.+ +. +.+.+|..+.++++|++|+|++|.++ .+|..|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN------LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT------EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc------ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 4567777776654321 1234567778888887764 33 44556666677888888888888887 67777888
Q ss_pred CCccceEeccccccc-ccccccccccccceeeccCCcchhhchhhhcCcc-ccceeecCCCcccccCCcccCCCCCCccc
Q 040735 620 LKHLRFLNLSRTNIQ-ILPESINSLYNLHTILLEDCRRLKKLCKNMGNLM-KLHHLRNPNVHSLEEMPKGFGKLTCLLTL 697 (779)
Q Consensus 620 l~~L~~L~l~~n~i~-~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 697 (779)
+++|++|+|++|.++ .+|..+.++++|++|++++|...+.+|..++.++ +|++|++++|.+.+.+|..++.++ |++|
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 888888888888887 6777788888888888888844447777787777 788888888875556777777766 7766
Q ss_pred CceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHh-----ccCCCCCCCCeEEEeec
Q 040735 698 SRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVL-----DMLKPHQKLEELTIAGY 772 (779)
Q Consensus 698 ~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l-----~~l~~~~~L~~L~l~~~ 772 (779)
++..+.. .+.....+.++++|+ .|.+.++..... .. .+..+++|+.|....+.+ ..+..+++|++|+|++|
T Consensus 203 ~Ls~N~l-~~~~~~~~~~l~~L~-~L~L~~N~l~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 203 DLSRNML-EGDASVLFGSDKNTQ-KIHLAKNSLAFD-LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp ECCSSEE-EECCGGGCCTTSCCS-EEECCSSEECCB-GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred ECcCCcc-cCcCCHHHhcCCCCC-EEECCCCceeee-cC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 5443322 122334455566666 666655432211 11 144556666664333322 22344566777777776
Q ss_pred CCC
Q 040735 773 GGT 775 (779)
Q Consensus 773 ~~~ 775 (779)
.++
T Consensus 279 ~l~ 281 (313)
T 1ogq_A 279 NLC 281 (313)
T ss_dssp EEE
T ss_pred ccc
Confidence 554
No 8
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.68 E-value=5.8e-16 Score=169.80 Aligned_cols=313 Identities=14% Similarity=0.049 Sum_probs=187.0
Q ss_pred CCccccchhhHHHHHHHH-hcCCCCCCCCcEEEEE--EcCCCCcHHHHHHHHhcccccc---cccC-ceEEEEeCCCCCH
Q 040735 184 EAEVYGREKDKEAIVELL-LRDDSRADDGFSVISI--KGLGGVGKTTLAQLVYQDDRVQ---RHFQ-IKSWTCVFEDFDV 256 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~~~~~~~~ 256 (779)
+..|+||+.+++.+.+++ ...........+.+.| +|++|+||||||+.+++..... ..|. ..+|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 357999999999999998 4321100012356666 9999999999999998743211 0122 3577887777788
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC--CCeEEEEEeCCcCCC------hhhhhhhcccCCCC---C--CCc
Q 040735 257 FRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLS--GKKFLVVLDDVWNEN------YNSWRALSCPFGAG---A--FGS 323 (779)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~------~~~~~~l~~~l~~~---~--~gs 323 (779)
..++..++.+++........+...+...+.+.+. +++++|||||+|.-. ...+..+...+... + ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 8999999999876533223345566666666664 789999999996521 23333332222211 2 345
Q ss_pred EEEEEcCchhhHhhhc--------c-cccccCCCCChHHHHHHHHHhh---cCCCCCCCChhHHHHHHHHHHHcC-----
Q 040735 324 KIVVTHRNQGVAETMR--------A-VSTKTLKELSDDDCLRVLIQHS---LGARDFNIPQSLKEVAEKIVKKCK----- 386 (779)
Q Consensus 324 ~IivTtR~~~v~~~~~--------~-~~~~~l~~L~~~~~~~lf~~~a---~~~~~~~~~~~~~~~~~~I~~~c~----- 386 (779)
.+|+||+...+...+. . ...+.+.+++.++++++|...+ +... ..+ .+....|++.|+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~---~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWE---PRHLELISDVYGEDKGG 255 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCC---HHHHHHHHHHHCGGGTS
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCC---hHHHHHHHHHHHHhccC
Confidence 5888887654332111 1 1238999999999999997653 2211 112 356778889999
Q ss_pred -CChHHHHHHHhhhc------CC--CChhHHHHHHhhhhcccccCCCCchHHHHHhhcCCChhhHhHhhhhccCC--CCC
Q 040735 387 -GLPLAAKTLGGLLR------GK--DDLNDWEFVLNANIWDLQEDKCDIVPALRVSYHFLPPQLKQCFAYFSLFP--KDY 455 (779)
Q Consensus 387 -G~PLai~~~~~~l~------~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp--~~~ 455 (779)
|.|..+..+..... .. -+...+......... ...+.-++..||++.+.++..++.+. .+.
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 99976655543221 11 123333333322110 23345567889999999999888754 233
Q ss_pred ccCHHHHHHHHH--H-cCCccCCCCCCCHHHHHHHHHHHHhhCccccccCC---CCCcEEecccH
Q 040735 456 DFQEEEIILLWT--A-EGFLDQEYNGRKMEDLGREFVRELHSRSLVQQSSK---NASRFVMHDLI 514 (779)
Q Consensus 456 ~i~~~~li~~W~--a-eg~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~---~~~~~~~Hdlv 514 (779)
.+....+...+. + +-+ . ...........++++|+..++|..... ...+|++|.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMY-N---VKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHS-C---CCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CccHHHHHHHHHHHHHhhc-C---CCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 555555554442 2 110 0 011123556789999999999987542 23456666655
No 9
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.67 E-value=7.5e-17 Score=139.95 Aligned_cols=80 Identities=26% Similarity=0.359 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhhHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhc--ccCcHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 040735 12 SVELLIEKLASEGLELFTRHEKLRADFIKWKGMLEMIQAVLADAEDR--QTKDKAVKKWLDNLQNLAYDAEDVLDELETE 89 (779)
Q Consensus 12 ~v~~l~~~l~s~~~~~~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~~~ 89 (779)
+|+.+++||.+.+..|+.+..+|++++++|+++|++|++||.+|+.+ +..|++++.|++|||++|||+|||||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678889999988999999999999999999999999999999997 5689999999999999999999999999998
Q ss_pred HH
Q 040735 90 AL 91 (779)
Q Consensus 90 ~~ 91 (779)
..
T Consensus 82 ~~ 83 (115)
T 3qfl_A 82 VD 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 74
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=174.89 Aligned_cols=222 Identities=19% Similarity=0.239 Sum_probs=173.0
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCc-cccC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPN-EIGN 619 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~ 619 (779)
++..++.+.+..+.+.... ...+.++++|+.|.+.++. +....+..+.++++|++|+|++|.++.+|. .|.+
T Consensus 62 ~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNH------IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp CCTTCSEEECCSCCCCEEC-TTTTSSCSSCCEEECCSSC------CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred CCCCCcEEEccCCcCCeeC-HHHhhCCCCCCEEECCCCc------CCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 5567888888877554332 3567889999999998865 433334455599999999999999998875 6899
Q ss_pred CCccceEeccccccccccc-ccccccccceeeccCCcchhhchh-hhcCccccceeecCCCcccccCCcccCCCCCCccc
Q 040735 620 LKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKLCK-NMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTL 697 (779)
Q Consensus 620 l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 697 (779)
+++|++|+|++|.++.+|. .+.++++|++|++++|..+..+|. .+.++++|++|++++|. +..+| .+..+++|++|
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L 212 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDEL 212 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCCEE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-ccCCCcccCEE
Confidence 9999999999999998866 688999999999999878888877 48899999999999998 77887 48889999998
Q ss_pred CceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc-----CCCCCCCCeEEEeec
Q 040735 698 SRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM-----LKPHQKLEELTIAGY 772 (779)
Q Consensus 698 ~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~-----l~~~~~L~~L~l~~~ 772 (779)
++..+.. .......+.++++|+ .|.+.++ .+.......+..+++|+.|+...+.+.. +..+++|+.|+|++|
T Consensus 213 ~Ls~N~l-~~~~~~~~~~l~~L~-~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 213 DLSGNHL-SAIRPGSFQGLMHLQ-KLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp ECTTSCC-CEECTTTTTTCTTCC-EEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred ECCCCcc-CccChhhhccCccCC-EEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 7654432 222345567778888 8888764 3445556667888899988766665544 345789999999998
Q ss_pred CC
Q 040735 773 GG 774 (779)
Q Consensus 773 ~~ 774 (779)
++
T Consensus 290 p~ 291 (440)
T 3zyj_A 290 PW 291 (440)
T ss_dssp CE
T ss_pred Cc
Confidence 75
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.66 E-value=2.1e-15 Score=161.37 Aligned_cols=292 Identities=14% Similarity=0.158 Sum_probs=177.9
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCC------CH
Q 040735 183 NEAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDF------DV 256 (779)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~------~~ 256 (779)
.+..|+||+++++.|.+++... +++.|+|++|+|||||++++++.. . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 4457999999999999998531 589999999999999999998732 1 6677765432 45
Q ss_pred HHHHHHHHHHhhc-----------------CCCCCcccHHHHHHHHHHHhCC-CeEEEEEeCCcCCCh-------hhhhh
Q 040735 257 FRVSKLILNSIAS-----------------DQCTDKDDLNLLQEKLKKQLSG-KKFLVVLDDVWNENY-------NSWRA 311 (779)
Q Consensus 257 ~~~~~~il~~l~~-----------------~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw~~~~-------~~~~~ 311 (779)
..++..+...+.. .......+...+.+.+.+.... ++++|||||++.-.. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 5566666555432 0000123456666666665543 389999999965321 11222
Q ss_pred hcccCCCCCCCcEEEEEcCchhhHhhh-----------cc-cccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHH
Q 040735 312 LSCPFGAGAFGSKIVVTHRNQGVAETM-----------RA-VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAE 379 (779)
Q Consensus 312 l~~~l~~~~~gs~IivTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~ 379 (779)
+.... ...++.++|+|++...+...+ +. ...+.+.+|+.+|+.+++......... ... .+.+.
T Consensus 155 L~~~~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~---~~~~~ 229 (350)
T 2qen_A 155 FAYAY-DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVP---ENEIE 229 (350)
T ss_dssp HHHHH-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHH
T ss_pred HHHHH-HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHH
Confidence 22221 112467899998876432211 11 236889999999999999764321111 111 25678
Q ss_pred HHHHHcCCChHHHHHHHhhhcCCCChhHHHH-HHhhhhcccccCCCCchHHHHHhhcCC---ChhhHhHhhhhccCCCCC
Q 040735 380 KIVKKCKGLPLAAKTLGGLLRGKDDLNDWEF-VLNANIWDLQEDKCDIVPALRVSYHFL---PPQLKQCFAYFSLFPKDY 455 (779)
Q Consensus 380 ~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cfl~ls~fp~~~ 455 (779)
.|++.|+|+|+++..++..+....+...+.. ..+. +...+.-.+..+ ++..+..+..+|+ +
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~~~~~~~~~~l~~la~---g- 294 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-----------AKGLIMGELEELRRRSPRYVDILRAIAL---G- 294 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH-----------HHHHHHHHHHHHHhCChhHHHHHHHHHh---C-
Confidence 8999999999999999876432212222211 1111 111111112222 7889999999988 2
Q ss_pred ccCHHHHHHHHHHcCCccCCCCCCCHHHHHHHHHHHHhhCccccccCCCCCcEEe-cccHHHHHH
Q 040735 456 DFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLVQQSSKNASRFVM-HDLINDLSR 519 (779)
Q Consensus 456 ~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~-Hdlv~~~a~ 519 (779)
.++...+.....+.. ++. .......+++.|.+.++|.... ..|.+ |++++++.+
T Consensus 295 ~~~~~~l~~~~~~~~------~~~-~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 295 YNRWSLIRDYLAVKG------TKI-PEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp CCSHHHHHHHHHHTT------CCC-CHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh------CCC-CHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 245555554432211 011 1356778999999999998752 35655 677777653
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=2.1e-16 Score=175.46 Aligned_cols=222 Identities=16% Similarity=0.191 Sum_probs=172.0
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCc-cccC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPN-EIGN 619 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~ 619 (779)
++..++.+.+.++.+... ....+.++++|+.|.+.++. +....+..+.++++|++|+|++|.++.+|. .|.+
T Consensus 73 ~~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNS------IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp CCTTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred CCCCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCc------cCCcChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 556788998887765432 23457789999999998865 444334455589999999999999998875 4889
Q ss_pred CCccceEeccccccccccc-ccccccccceeeccCCcchhhchhh-hcCccccceeecCCCcccccCCcccCCCCCCccc
Q 040735 620 LKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTL 697 (779)
Q Consensus 620 l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 697 (779)
+++|++|+|++|.++.+|. .+.++++|++|++++|..+..+|.. +.++++|++|++++|. +..+| .+..+++|++|
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L 223 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEEL 223 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-cccccccccEE
Confidence 9999999999999998876 6889999999999998788888775 8899999999999998 67776 48889999998
Q ss_pred CceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc-----CCCCCCCCeEEEeec
Q 040735 698 SRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM-----LKPHQKLEELTIAGY 772 (779)
Q Consensus 698 ~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~-----l~~~~~L~~L~l~~~ 772 (779)
++..+.. .......+.++++|+ .|.+.+. .+.......+..+++|+.|+...+.+.. +..+++|+.|+|++|
T Consensus 224 ~Ls~N~l-~~~~~~~~~~l~~L~-~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 224 EMSGNHF-PEIRPGSFHGLSSLK-KLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp ECTTSCC-SEECGGGGTTCTTCC-EEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred ECcCCcC-cccCcccccCccCCC-EEEeCCC-cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 7654433 233345677888888 8888764 3444555667888888888665555444 345789999999998
Q ss_pred CC
Q 040735 773 GG 774 (779)
Q Consensus 773 ~~ 774 (779)
+.
T Consensus 301 p~ 302 (452)
T 3zyi_A 301 PW 302 (452)
T ss_dssp CE
T ss_pred Cc
Confidence 64
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.65 E-value=6.6e-17 Score=170.02 Aligned_cols=201 Identities=16% Similarity=0.212 Sum_probs=159.5
Q ss_pred ccceEecccCcccccccccch--HhhhhhcCCCCccEEEecC-CCCC-ccCccccCCCccceEeccccccc-cccccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAW--SVLQRLLNLPRLRVFSLHG-YHIS-KLPNEIGNLKHLRFLNLSRTNIQ-ILPESINS 642 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~-n~l~-~lp~~~~~l~~L~~L~l~~n~i~-~lp~~~~~ 642 (779)
.+++.|.+.++. +.+ .+|..+.++++|++|++++ |.+. .+|..|+++++|++|+|++|.++ .+|..+++
T Consensus 50 ~~l~~L~L~~~~------l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLN------LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCC------CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCC------ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 578888887765 555 6788888999999999995 8887 78999999999999999999999 88999999
Q ss_pred ccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCC-CCcccCceeeCCCCCCCchhhhccccccc
Q 040735 643 LYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLT-CLLTLSRFVVGKDSGSGLRELKSLMHLQG 721 (779)
Q Consensus 643 L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~-~L~~L~~~~~~~~~~~~~~~L~~L~~L~~ 721 (779)
+++|++|++++|...+.+|..+..+++|++|++++|.+.+.+|..+++++ +|++|++..+.. .+.....+..++ |+
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l-~~~~~~~~~~l~-L~- 200 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL-TGKIPPTFANLN-LA- 200 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE-EEECCGGGGGCC-CS-
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee-eccCChHHhCCc-cc-
Confidence 99999999999955558899999999999999999996668999999998 999987654332 223445566666 87
Q ss_pred eeEEcccCCCCCcchhhhccCCCCCCCchHHHHh----ccCCCCCCCCeEEEeecCCC-CCC
Q 040735 722 TLQISKLENVKDVGDASEAQLNTKPDFKIEIRVL----DMLKPHQKLEELTIAGYGGT-KFP 778 (779)
Q Consensus 722 ~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l----~~l~~~~~L~~L~l~~~~~~-~~P 778 (779)
.|++.++... ......+..+++|+.|....+.+ ..+..+++|++|+|++|.++ .+|
T Consensus 201 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 201 FVDLSRNMLE-GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp EEECCSSEEE-ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC
T ss_pred EEECcCCccc-CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC
Confidence 8888764322 23445667888888885544332 33566789999999999886 455
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=3.4e-16 Score=164.23 Aligned_cols=225 Identities=16% Similarity=0.118 Sum_probs=169.6
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccc--hHhhhhhcCCCCccEEEecCCCCCccCcccc
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLA--WSVLQRLLNLPRLRVFSLHGYHISKLPNEIG 618 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~ 618 (779)
++..++++.+.++...... ...+..+++|+.|.+.++. +. +..+..+.++++|++|++++|.+..+|..+.
T Consensus 26 ~~~~l~~L~L~~n~l~~i~-~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~ 98 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNG------LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 98 (306)
T ss_dssp CCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC------CCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEE
T ss_pred CCCCCCEEECCCCccCccC-HhHhhccccCCEEECCCCc------cCcccCcccccccccccCEEECCCCccccChhhcC
Confidence 4567888888776554221 1236788999999998765 22 2224555689999999999999999998899
Q ss_pred CCCccceEeccccccccccc--ccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccc-cCCcccCCCCCCc
Q 040735 619 NLKHLRFLNLSRTNIQILPE--SINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLE-EMPKGFGKLTCLL 695 (779)
Q Consensus 619 ~l~~L~~L~l~~n~i~~lp~--~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~L~~L~ 695 (779)
++++|++|++++|.++.+|. .+..+++|++|++++|......|..+..+++|++|++++|...+ .+|..++.+++|+
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 99999999999999998875 78999999999999995545556678999999999999998443 4788899999999
Q ss_pred ccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc-----CCCC-CCCCeEEE
Q 040735 696 TLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM-----LKPH-QKLEELTI 769 (779)
Q Consensus 696 ~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~-----l~~~-~~L~~L~l 769 (779)
+|++..+.. .......+.++++|+ .|.+.+.. +...+...+..+++|+.|+...+.+.. +..+ ++|++|+|
T Consensus 179 ~L~Ls~n~l-~~~~~~~~~~l~~L~-~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 179 FLDLSQCQL-EQLSPTAFNSLSSLQ-VLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp EEECTTSCC-CEECTTTTTTCTTCC-EEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred EEECCCCCc-CCcCHHHhcCCCCCC-EEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 997654432 222344567778888 88887753 334445556788889888666655543 3344 58999999
Q ss_pred eecCCC
Q 040735 770 AGYGGT 775 (779)
Q Consensus 770 ~~~~~~ 775 (779)
++|++.
T Consensus 256 ~~N~~~ 261 (306)
T 2z66_A 256 TQNDFA 261 (306)
T ss_dssp TTCCEE
T ss_pred cCCCee
Confidence 998764
No 15
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=6.4e-16 Score=162.00 Aligned_cols=170 Identities=22% Similarity=0.236 Sum_probs=74.6
Q ss_pred CCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeec
Q 040735 596 NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRN 675 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 675 (779)
.+++|++|+|++|.++.+|. +.++++|++|+|++|.++.+| .+..+++|++|++++| .+..+|. +..+++|++|++
T Consensus 61 ~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYL 136 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEEC
T ss_pred ccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEEC
Confidence 44444444444444444443 444444444444444444443 3444444444444444 3333432 444444444444
Q ss_pred CCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHh
Q 040735 676 PNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVL 755 (779)
Q Consensus 676 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l 755 (779)
++|. +..+|. ++.+++|++|++..+.. ..+..+..+++|+ .|.+.++. +...+. +..+++|++|....+.+
T Consensus 137 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l---~~~~~l~~l~~L~-~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 137 DLNQ-ITNISP-LAGLTNLQYLSIGNAQV---SDLTPLANLSKLT-TLKADDNK-ISDISP--LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CSSC-CCCCGG-GGGCTTCCEEECCSSCC---CCCGGGTTCTTCC-EEECCSSC-CCCCGG--GGGCTTCCEEECTTSCC
T ss_pred CCCc-cCcCcc-ccCCCCccEEEccCCcC---CCChhhcCCCCCC-EEECCCCc-cCcChh--hcCCCCCCEEEccCCcc
Confidence 4444 333332 44444444443322211 1122233444444 44443321 111111 33444444443322222
Q ss_pred c---cCCCCCCCCeEEEeecCCCCCC
Q 040735 756 D---MLKPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 756 ~---~l~~~~~L~~L~l~~~~~~~~P 778 (779)
. .+..+++|+.|+|++|+++..|
T Consensus 208 ~~~~~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 208 SDVSPLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CBCGGGTTCTTCCEEEEEEEEEECCC
T ss_pred CccccccCCCCCCEEEccCCeeecCC
Confidence 1 2345677888888887665544
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.62 E-value=8.7e-16 Score=181.90 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=76.6
Q ss_pred ccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCC-ccCccccCCCccceEeccccccc-ccccccc
Q 040735 564 VSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHIS-KLPNEIGNLKHLRFLNLSRTNIQ-ILPESIN 641 (779)
Q Consensus 564 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~i~-~lp~~~~ 641 (779)
+..+++|+.|.+.++. +.+.+|..+..+++|++|++++|.++ .+|..++++++|++|+|++|.++ .+|..++
T Consensus 438 l~~l~~L~~L~L~~n~------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNM------LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp GGGCTTCCEEECCSSC------CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred HhcCCCCCEEECCCCc------ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 4445555555555443 44455555556667777777777666 45666777777777777777766 5666777
Q ss_pred cccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCccc
Q 040735 642 SLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGF 688 (779)
Q Consensus 642 ~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~ 688 (779)
.+++|++|++++|...+.+|..++.+++|++|++++|.+.+.+|..+
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 77777777777775555667777777777777777776555555443
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.62 E-value=3e-15 Score=158.95 Aligned_cols=221 Identities=17% Similarity=0.181 Sum_probs=129.5
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNL 620 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l 620 (779)
+...++.+.+.++.+.... ...+.++++|+.|.+.++. +....|..+.++++|++|++++|.++.+|..+.
T Consensus 52 ~~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-- 122 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNK------ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-- 122 (332)
T ss_dssp CCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC------CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--
T ss_pred CCCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCc------cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--
Confidence 3456778887766543221 2357788889998888765 444445556688999999999998888887665
Q ss_pred CccceEecccccccccccc-cccccccceeeccCCcch--hhchhhhcCccccceeecCCCcccccCCcccCCCCCCccc
Q 040735 621 KHLRFLNLSRTNIQILPES-INSLYNLHTILLEDCRRL--KKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTL 697 (779)
Q Consensus 621 ~~L~~L~l~~n~i~~lp~~-~~~L~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 697 (779)
++|++|++++|.++.+|.. +.++++|++|++++|... ...|..+..+ +|++|++++|. +..+|..+. ++|++|
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L 198 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNEL 198 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEE
Confidence 7888888888888888654 788888888888888331 2345556666 67777776666 445555443 455555
Q ss_pred CceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc----CCCCCCCCeEEEeecC
Q 040735 698 SRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM----LKPHQKLEELTIAGYG 773 (779)
Q Consensus 698 ~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~----l~~~~~L~~L~l~~~~ 773 (779)
++..+.. .......+.++++|+ .|.+.+. .+.......+..+++|+.|....+.+.. +..+++|+.|+|++|.
T Consensus 199 ~l~~n~i-~~~~~~~l~~l~~L~-~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 199 HLDHNKI-QAIELEDLLRYSKLY-RLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp BCCSSCC-CCCCTTSSTTCTTCS-CCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred ECCCCcC-CccCHHHhcCCCCCC-EEECCCC-cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence 4333221 111222334444444 4444432 2222233334455555555333222222 2234455555555555
Q ss_pred CCCC
Q 040735 774 GTKF 777 (779)
Q Consensus 774 ~~~~ 777 (779)
++.+
T Consensus 276 l~~~ 279 (332)
T 2ft3_A 276 ITKV 279 (332)
T ss_dssp CCBC
T ss_pred CCcc
Confidence 5444
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.62 E-value=1.1e-15 Score=169.49 Aligned_cols=199 Identities=18% Similarity=0.226 Sum_probs=160.2
Q ss_pred ccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccC-ccccCCCccceEecccccccccccc-cccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPES-INSLYN 645 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~ 645 (779)
++++.|.+.++. +....+..+.++++|++|+|++|.++.++ ..|.++++|++|+|++|.++.+|.. +..+++
T Consensus 75 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMENN------IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCccEEECcCCc------CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 678999888765 44444555669999999999999999775 7899999999999999999998765 889999
Q ss_pred cceeeccCCcchhhchh-hhcCccccceeecCCCcccccCCcc-cCCCCCCcccCceeeCCCCCCCchhhhcccccccee
Q 040735 646 LHTILLEDCRRLKKLCK-NMGNLMKLHHLRNPNVHSLEEMPKG-FGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTL 723 (779)
Q Consensus 646 L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L 723 (779)
|++|+|++| .+..+|. .+.++++|++|++++|..++.+|.. +..+++|++|++..+.. ..+..+..+.+|+ .|
T Consensus 149 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~l~~L~-~L 223 (452)
T 3zyi_A 149 LRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI---KDMPNLTPLVGLE-EL 223 (452)
T ss_dssp CCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC---SSCCCCTTCTTCC-EE
T ss_pred CCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc---ccccccccccccc-EE
Confidence 999999999 6777776 5899999999999997768888764 88899999987654433 3345677788888 88
Q ss_pred EEcccCCCCCcchhhhccCCCCCCCchHHHHhc-----cCCCCCCCCeEEEeecCCCCCC
Q 040735 724 QISKLENVKDVGDASEAQLNTKPDFKIEIRVLD-----MLKPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 724 ~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~-----~l~~~~~L~~L~l~~~~~~~~P 778 (779)
++.++ .+.......+..+++|+.|....+.+. .+..+++|+.|+|++|.++.+|
T Consensus 224 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 224 EMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp ECTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ECcCC-cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 88775 344455667788999998866555443 3556789999999999998876
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.61 E-value=7.9e-16 Score=178.04 Aligned_cols=195 Identities=9% Similarity=0.123 Sum_probs=138.4
Q ss_pred CCceeEEEEEecccccccccccccccccceEecccCcccccccccch-HhhhhhcCC------CCccEEEecCCCCCccC
Q 040735 542 SQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAW-SVLQRLLNL------PRLRVFSLHGYHISKLP 614 (779)
Q Consensus 542 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~-~~~~~~~~l------~~L~~L~l~~n~l~~lp 614 (779)
...++++.+.++..... ....+.++++|+.|.+.++.. +++ .+|..+.++ ++|++|++++|.++.+|
T Consensus 248 l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~-----l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip 321 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRG-----ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321 (636)
T ss_dssp CTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECTTCTT-----SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC
T ss_pred cCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECcCCCC-----CccccchHHHHhhhccccCCCCCEEECCCCcCCccC
Confidence 35678888887654332 235677889999998887631 455 677777665 89999999999999998
Q ss_pred c--cccCCCccceEeccccccc-ccccccccccccceeeccCCcchhhchhhhcCccc-cceeecCCCcccccCCcccCC
Q 040735 615 N--EIGNLKHLRFLNLSRTNIQ-ILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMK-LHHLRNPNVHSLEEMPKGFGK 690 (779)
Q Consensus 615 ~--~~~~l~~L~~L~l~~n~i~-~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~-L~~L~l~~~~~~~~~p~~~~~ 690 (779)
. .++++++|++|++++|.++ .+| .++.+++|++|++++| .+..+|..+.++++ |++|++++|. +..+|..++.
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~ 398 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDA 398 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCT
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-Ccccchhhhh
Confidence 8 8999999999999999999 888 8899999999999998 66688988999988 9999999998 5588887766
Q ss_pred CC--CCcccCceeeCCCCCCCchhhh-------ccccccceeEEcccCCCCCcchhhhccCCCCCCC
Q 040735 691 LT--CLLTLSRFVVGKDSGSGLRELK-------SLMHLQGTLQISKLENVKDVGDASEAQLNTKPDF 748 (779)
Q Consensus 691 L~--~L~~L~~~~~~~~~~~~~~~L~-------~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L 748 (779)
++ +|++|++..+.. .+.....+. .+.+|+ .|.+.++. +..++...+..+++|+.|
T Consensus 399 ~~l~~L~~L~Ls~N~l-~~~~p~~l~~~~~~~~~~~~L~-~L~Ls~N~-l~~lp~~~~~~l~~L~~L 462 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEI-GSVDGKNFDPLDPTPFKGINVS-SINLSNNQ-ISKFPKELFSTGSPLSSI 462 (636)
T ss_dssp TCSSCEEEEECCSSCT-TTTTTCSSCTTCSSCCCCCCEE-EEECCSSC-CCSCCTHHHHTTCCCSEE
T ss_pred cccCccCEEECcCCcC-CCcchhhhcccccccccCCCCC-EEECcCCc-cCcCCHHHHccCCCCCEE
Confidence 54 777776544332 122222233 344454 55554432 223444444445555555
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=168.45 Aligned_cols=199 Identities=17% Similarity=0.229 Sum_probs=160.0
Q ss_pred ccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccC-ccccCCCccceEeccccccccccc-ccccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPE-SINSLYN 645 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~-~~~~L~~ 645 (779)
++++.|.+.++. +....+..+.++++|++|+|++|.++.++ ..|.++++|++|+|++|+++.+|. .|..+++
T Consensus 64 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQ------IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCC------CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCcEEEccCCc------CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 678888888765 43433455669999999999999999876 779999999999999999999976 5899999
Q ss_pred cceeeccCCcchhhchh-hhcCccccceeecCCCcccccCCc-ccCCCCCCcccCceeeCCCCCCCchhhhcccccccee
Q 040735 646 LHTILLEDCRRLKKLCK-NMGNLMKLHHLRNPNVHSLEEMPK-GFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTL 723 (779)
Q Consensus 646 L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L 723 (779)
|++|++++| .+..+|. .+.++++|++|++++|..++.+|. .+.++++|++|++..+.. ..+..+..+++|+ .|
T Consensus 138 L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~l~~L~-~L 212 (440)
T 3zyj_A 138 LKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL---REIPNLTPLIKLD-EL 212 (440)
T ss_dssp CCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC---SSCCCCTTCSSCC-EE
T ss_pred CceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC---ccccccCCCcccC-EE
Confidence 999999999 6777766 589999999999999776888776 488899999987654433 3455677888888 88
Q ss_pred EEcccCCCCCcchhhhccCCCCCCCchHHHHhc-----cCCCCCCCCeEEEeecCCCCCC
Q 040735 724 QISKLENVKDVGDASEAQLNTKPDFKIEIRVLD-----MLKPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 724 ~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~-----~l~~~~~L~~L~l~~~~~~~~P 778 (779)
++.++ .+.......+..+++|+.|....+.+. .+..+++|+.|+|++|.++.+|
T Consensus 213 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 213 DLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp ECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred ECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 88875 444555667788899998866555443 3556789999999999998876
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.61 E-value=3.1e-15 Score=158.65 Aligned_cols=223 Identities=16% Similarity=0.170 Sum_probs=148.3
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNL 620 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l 620 (779)
++..++.+.+.++.+.... ...+.++++|+.|.+.++. +....|..+.++++|++|++++|.++.+|..+.
T Consensus 50 ~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-- 120 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNK------ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-- 120 (330)
T ss_dssp CCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--
T ss_pred CCCCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCc------CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--
Confidence 4456777877766543321 2246788889999888765 444345566688999999999999888887665
Q ss_pred CccceEeccccccccccc-ccccccccceeeccCCcch--hhchhhhcCccccceeecCCCcccccCCcccCCCCCCccc
Q 040735 621 KHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRL--KKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTL 697 (779)
Q Consensus 621 ~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 697 (779)
++|++|++++|.++.+|. .+.++++|++|++++|... ...|..+.++++|++|++++|. +..+|..+. ++|++|
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTEL 197 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEE
Confidence 688888888888887754 4788888888888888332 2446667888888888888887 666776553 667776
Q ss_pred CceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHh----ccCCCCCCCCeEEEeecC
Q 040735 698 SRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVL----DMLKPHQKLEELTIAGYG 773 (779)
Q Consensus 698 ~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l----~~l~~~~~L~~L~l~~~~ 773 (779)
++..+.. .......+..+++|+ .|.+.+.. +.......+..+++|+.|....+.+ ..+..+++|++|+|++|.
T Consensus 198 ~l~~n~l-~~~~~~~~~~l~~L~-~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 198 HLDGNKI-TKVDAASLKGLNNLA-KLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp ECTTSCC-CEECTGGGTTCTTCC-EEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred ECCCCcC-CccCHHHhcCCCCCC-EEECCCCc-CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc
Confidence 5433322 122234566666776 77776542 3333444556677777774443333 234456778888888877
Q ss_pred CCCCC
Q 040735 774 GTKFP 778 (779)
Q Consensus 774 ~~~~P 778 (779)
++.+|
T Consensus 275 i~~~~ 279 (330)
T 1xku_A 275 ISAIG 279 (330)
T ss_dssp CCCCC
T ss_pred CCccC
Confidence 77665
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=6.1e-16 Score=165.83 Aligned_cols=177 Identities=15% Similarity=0.152 Sum_probs=133.6
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCcc-ccC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNE-IGN 619 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~ 619 (779)
+...++++.+.++.+.... ...+.++++|+.|.+.++. +....+..+.++++|++|++++|.++.+|.. |++
T Consensus 50 ~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 122 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNG------INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122 (353)
T ss_dssp CCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred ccccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCc------cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence 4457888888776544321 2247788999999998765 4443344566899999999999999998865 899
Q ss_pred CCccceEeccccccccccc--ccccccccceeeccCCcchhhc-hhhhcCccccceeecCCCcccccCCcccCCCCCCcc
Q 040735 620 LKHLRFLNLSRTNIQILPE--SINSLYNLHTILLEDCRRLKKL-CKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLT 696 (779)
Q Consensus 620 l~~L~~L~l~~n~i~~lp~--~~~~L~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~ 696 (779)
+++|++|++++|.++.+|. .+.++++|++|++++|..+..+ |..+.++++|++|++++|...+..|..++++++|++
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 9999999999999999987 6889999999999998656666 456899999999999999855555778999999999
Q ss_pred cCceeeCCCCCCCch--hhhccccccceeEEccc
Q 040735 697 LSRFVVGKDSGSGLR--ELKSLMHLQGTLQISKL 728 (779)
Q Consensus 697 L~~~~~~~~~~~~~~--~L~~L~~L~~~L~i~~~ 728 (779)
|++..+.. ..+. .+..+++|+ .|++.++
T Consensus 203 L~l~~n~l---~~~~~~~~~~~~~L~-~L~L~~n 232 (353)
T 2z80_A 203 LILHMKQH---ILLLEIFVDVTSSVE-CLELRDT 232 (353)
T ss_dssp EEEECSCS---TTHHHHHHHHTTTEE-EEEEESC
T ss_pred ecCCCCcc---ccchhhhhhhccccc-EEECCCC
Confidence 87654432 1222 133456666 6766654
No 23
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=3e-14 Score=152.77 Aligned_cols=292 Identities=14% Similarity=0.104 Sum_probs=172.0
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCC-----CCHH
Q 040735 183 NEAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFED-----FDVF 257 (779)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~ 257 (779)
.+..|+||+++++.|.+ +.. +++.|+|++|+|||+|++++.+.. .. ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 44579999999999999 731 589999999999999999998742 21 2578877643 3444
Q ss_pred HHHHHHHHHhhc-------------CC-----CC----------CcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh---
Q 040735 258 RVSKLILNSIAS-------------DQ-----CT----------DKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY--- 306 (779)
Q Consensus 258 ~~~~~il~~l~~-------------~~-----~~----------~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--- 306 (779)
.....+.+.+.. .. .. .......+.+.+.+... ++++|||||++.-+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 444444443311 00 00 02234555555554333 499999999965221
Q ss_pred hhhhhhcccCCCCCCCcEEEEEcCchhhHhhh----------c-c-cccccCCCCChHHHHHHHHHhhcCCCCCCCChhH
Q 040735 307 NSWRALSCPFGAGAFGSKIVVTHRNQGVAETM----------R-A-VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSL 374 (779)
Q Consensus 307 ~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~----------~-~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~ 374 (779)
..+..+...+.....+.++|+|++.......+ . . ...+.+.+|+.+++.+++......... .. ..
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~-~~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DF-KD- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CC-CC-
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CC-Cc-
Confidence 12222222222222367899999976532211 1 1 246889999999999999874321111 11 11
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHH-HhhhhcccccCCCCchHHHH-Hhh--cCCChhhHhHhhhhcc
Q 040735 375 KEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEFV-LNANIWDLQEDKCDIVPALR-VSY--HFLPPQLKQCFAYFSL 450 (779)
Q Consensus 375 ~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~~-l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~cfl~ls~ 450 (779)
...|++.|+|+|+++..++..+....+...|... .+.... .+..-+. +.+ ..||+..+..+..+|+
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK-------LILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------HHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH-------HHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 1789999999999999998776433233333211 111000 0111111 111 1688899999999998
Q ss_pred CCCCCccCHHHHHHHHH-HcCCccCCCCCCCHHHHHHHHHHHHhhCccccccCCCCCcEE-ecccHHHHH
Q 040735 451 FPKDYDFQEEEIILLWT-AEGFLDQEYNGRKMEDLGREFVRELHSRSLVQQSSKNASRFV-MHDLINDLS 518 (779)
Q Consensus 451 fp~~~~i~~~~li~~W~-aeg~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~-~Hdlv~~~a 518 (779)
+. +...+..... ..|. .........+++.|++.++|.... ..|. .|++++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred ---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 21 4444433211 1121 011345778999999999998653 3566 477887653
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.60 E-value=5.5e-16 Score=162.63 Aligned_cols=200 Identities=16% Similarity=0.100 Sum_probs=155.5
Q ss_pred ccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCcc---CccccCCCccceEecccccccccccccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISKL---PNEIGNLKHLRFLNLSRTNIQILPESINSL 643 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~l---p~~~~~l~~L~~L~l~~n~i~~lp~~~~~L 643 (779)
++|+.|.+.++. +. .+|..++ ++++|++|+|++|.++.+ |..+..+++|++|+|++|.++.+|..+..+
T Consensus 28 ~~l~~L~L~~n~------l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESNK------LQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCSSC------CC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCEEECCCCc------cC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence 688999888765 33 4566655 999999999999999865 677788999999999999999999999999
Q ss_pred cccceeeccCCcchhhchh--hhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccc
Q 040735 644 YNLHTILLEDCRRLKKLCK--NMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQG 721 (779)
Q Consensus 644 ~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~ 721 (779)
++|++|++++| .+..+|. .+..+++|++|++++|......|..++.+++|++|++..+..........+..+++|+
T Consensus 101 ~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~- 178 (306)
T 2z66_A 101 EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT- 178 (306)
T ss_dssp TTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-
T ss_pred CCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC-
Confidence 99999999999 7777764 6899999999999999955556666889999999876443322112234466777787
Q ss_pred eeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc-----CCCCCCCCeEEEeecCCCCC
Q 040735 722 TLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM-----LKPHQKLEELTIAGYGGTKF 777 (779)
Q Consensus 722 ~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~-----l~~~~~L~~L~l~~~~~~~~ 777 (779)
.|++.+. .+.......+..+++|+.|....+.+.. +..+++|+.|+|++|.+...
T Consensus 179 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 179 FLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp EEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred EEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 8888764 3344445567788889988666555443 34578999999999987653
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=9.7e-16 Score=181.49 Aligned_cols=151 Identities=22% Similarity=0.264 Sum_probs=128.6
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCC-ccCccccCCC
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHIS-KLPNEIGNLK 621 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~ 621 (779)
..++.+.+..+.... .....+..+++|+.|.+.++. +.+.+|..+.++++|+.|++++|.++ .+|..++.++
T Consensus 394 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 394 NTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNY------LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp CCCCEEECCSSEEEE-ECCGGGGGCTTCCEEECCSSE------EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CCccEEECCCCcccc-ccCHHHhcCCCCCEEECcCCc------ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 457777776654332 123457788999999988865 66677777889999999999999998 6789999999
Q ss_pred ccceEeccccccc-ccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCce
Q 040735 622 HLRFLNLSRTNIQ-ILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRF 700 (779)
Q Consensus 622 ~L~~L~l~~n~i~-~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~ 700 (779)
+|++|++++|.++ .+|..++++++|++|++++|...+.+|..++.+++|++|++++|.+.+.+|..++++++|+.|++.
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 9999999999999 779999999999999999996666899999999999999999999777899999999999988654
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.60 E-value=4.8e-16 Score=179.85 Aligned_cols=225 Identities=15% Similarity=0.148 Sum_probs=169.4
Q ss_pred CCceeEEEEEecccccc----------------ccccccc--ccccceEecccCcccccccccchHhhhhhcCCCCccEE
Q 040735 542 SQSLRHFSYIHGEYDGK----------------KRLKSVS--DVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVF 603 (779)
Q Consensus 542 ~~~~r~l~~~~~~~~~~----------------~~~~~~~--~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 603 (779)
...++.+.+..+.+.+. ..+..+. ++++|+.|.+.++. +.+.+|..+.++++|++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~------l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP------NLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT------TCSSCCTTTTTCSSCCEE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc------CCccChHHHhcCCCCCEE
Confidence 45788888888765441 0234566 89999999998865 567788888899999999
Q ss_pred EecCCC-CCc--cCccccCC------CccceEeccccccccccc--ccccccccceeeccCCcchhhchhhhcCccccce
Q 040735 604 SLHGYH-ISK--LPNEIGNL------KHLRFLNLSRTNIQILPE--SINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHH 672 (779)
Q Consensus 604 ~l~~n~-l~~--lp~~~~~l------~~L~~L~l~~n~i~~lp~--~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 672 (779)
++++|. ++. +|..++++ ++|++|++++|.++.+|. .++++++|++|++++|...+.+| .++.+++|++
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 999998 884 89888877 999999999999999999 99999999999999995444999 8999999999
Q ss_pred eecCCCcccccCCcccCCCCC-CcccCceeeCCCCCCCchhhhcc--ccccceeEEcccCCCCCcchhhhc-------cC
Q 040735 673 LRNPNVHSLEEMPKGFGKLTC-LLTLSRFVVGKDSGSGLRELKSL--MHLQGTLQISKLENVKDVGDASEA-------QL 742 (779)
Q Consensus 673 L~l~~~~~~~~~p~~~~~L~~-L~~L~~~~~~~~~~~~~~~L~~L--~~L~~~L~i~~~~~~~~~~~~~~~-------~L 742 (779)
|++++|. +..+|..++++++ |++|++..+... .....+..+ .+|+ .|.+.++..... .+..+. .+
T Consensus 358 L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~-~L~Ls~N~l~~~-~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 358 LNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMS-AIDFSYNEIGSV-DGKNFDPLDPTPFKG 432 (636)
T ss_dssp EECCSSE-EEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEE-EEECCSSCTTTT-TTCSSCTTCSSCCCC
T ss_pred EECCCCc-cccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccC-EEECcCCcCCCc-chhhhcccccccccC
Confidence 9999999 6699999999999 999986655432 222233333 3677 777776543322 222223 55
Q ss_pred CCCCCCchHHHHhccCC-----CCCCCCeEEEeecCCCCCC
Q 040735 743 NTKPDFKIEIRVLDMLK-----PHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 743 ~~l~~L~~~~~~l~~l~-----~~~~L~~L~l~~~~~~~~P 778 (779)
.+|+.|....+.+..+. .+++|++|+|++|.++.+|
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC
Confidence 57777755544444443 2577888888888777666
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=2.1e-15 Score=177.78 Aligned_cols=152 Identities=10% Similarity=0.160 Sum_probs=122.7
Q ss_pred CCceeEEEEEecccccccccccccccccceEecccCcccccccccch-Hhhhhhc-------CCCCccEEEecCCCCCcc
Q 040735 542 SQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAW-SVLQRLL-------NLPRLRVFSLHGYHISKL 613 (779)
Q Consensus 542 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~-~~~~~~~-------~l~~L~~L~l~~n~l~~l 613 (779)
...++.+.+..+..... .+..+.++++|+.|.+.++.. +++ .+|..+. .+++|+.|+|++|.++.+
T Consensus 490 L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~N~~-----lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i 563 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRG-----ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563 (876)
T ss_dssp CTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTTCTT-----SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC
T ss_pred CCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcCCCC-----cccccchHHHHhhhhcccccCCccEEEeeCCcCCcc
Confidence 35678888887654332 235678899999999987641 445 5666544 455999999999999999
Q ss_pred Cc--cccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccc-cceeecCCCcccccCCcccCC
Q 040735 614 PN--EIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMK-LHHLRNPNVHSLEEMPKGFGK 690 (779)
Q Consensus 614 p~--~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~-L~~L~l~~~~~~~~~p~~~~~ 690 (779)
|. .|+++++|++|+|++|.++.+| .++++++|+.|++++| .+..+|..+.++++ |++|++++|. +..+|..++.
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~ 640 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNA 640 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCT
T ss_pred CChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCchhhhc
Confidence 98 8999999999999999999999 8999999999999999 66699999999999 9999999999 6688887776
Q ss_pred CCC--CcccCceee
Q 040735 691 LTC--LLTLSRFVV 702 (779)
Q Consensus 691 L~~--L~~L~~~~~ 702 (779)
++. |+.|++..+
T Consensus 641 ~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 641 KSVYVMGSVDFSYN 654 (876)
T ss_dssp TCSSCEEEEECCSS
T ss_pred cccCCCCEEECcCC
Confidence 654 777765443
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=169.24 Aligned_cols=226 Identities=19% Similarity=0.218 Sum_probs=147.3
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCc-cccC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPN-EIGN 619 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~ 619 (779)
++..++.+.+.++.+.... ...+.++++|+.|.+.++. +....|..+.++++|++|+|++|.++.+|. .|.+
T Consensus 30 ~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENI------VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp CCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred CCCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCc------cCEeChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence 4567788888776544321 2456788888888888764 434445555688888888888888888874 4688
Q ss_pred CCccceEeccccccccc-ccccccccccceeeccCCcchhhc-hhhhcCccccceeecCCCcccccCCc-ccCCCCCCcc
Q 040735 620 LKHLRFLNLSRTNIQIL-PESINSLYNLHTILLEDCRRLKKL-CKNMGNLMKLHHLRNPNVHSLEEMPK-GFGKLTCLLT 696 (779)
Q Consensus 620 l~~L~~L~l~~n~i~~l-p~~~~~L~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~ 696 (779)
+++|++|+|++|.++.+ |..+.++++|++|++++| .+..+ |..+.++++|++|++++|. +..+|. .++++++|+.
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIV 180 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcE
Confidence 88888888888888865 556788888888888888 44444 5567888888888888887 555554 3777777777
Q ss_pred cCceeeCCCCCCCchhhhccccccceeEEcccC-----------------------CCCCcchhhhccCCCCCCCchHHH
Q 040735 697 LSRFVVGKDSGSGLRELKSLMHLQGTLQISKLE-----------------------NVKDVGDASEAQLNTKPDFKIEIR 753 (779)
Q Consensus 697 L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~-----------------------~~~~~~~~~~~~L~~l~~L~~~~~ 753 (779)
|++..+.... .....+.++++|+ .|.+.++. .+..++...+..+++|+.|....+
T Consensus 181 L~l~~n~i~~-~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 181 LRLRHLNINA-IRDYSFKRLYRLK-VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp EEEESCCCCE-ECTTCSCSCTTCC-EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred EeCCCCcCcE-eChhhcccCcccc-eeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 7654432211 1111233333443 44443322 233344455667777777754444
Q ss_pred Hhc-----cCCCCCCCCeEEEeecCCCCC
Q 040735 754 VLD-----MLKPHQKLEELTIAGYGGTKF 777 (779)
Q Consensus 754 ~l~-----~l~~~~~L~~L~l~~~~~~~~ 777 (779)
.+. .+..+++|++|+|++|.+..+
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred cCCccChhhccccccCCEEECCCCccceE
Confidence 332 245567888888888876543
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.59 E-value=6.3e-15 Score=160.23 Aligned_cols=223 Identities=12% Similarity=0.112 Sum_probs=139.6
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccC-ccccCCC
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLP-NEIGNLK 621 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~ 621 (779)
..++.+.+..+...... ...+..+++|+.|.+.++. +....+..+.++++|++|+|++|.++.+| ..|++++
T Consensus 45 ~~l~~l~l~~~~l~~l~-~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp CCCSEEEEESCEESEEC-THHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCceEEEecCCchhhCC-hhHhcccccCcEEECCCCc------ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 56777777765432211 1125677888888887764 33322334558888888888888888775 5578888
Q ss_pred ccceEecccccccccccc-cccccccceeeccCCcchhhc-hhhhcCccccceeecCCCcccccCCcccCCCCCCcccCc
Q 040735 622 HLRFLNLSRTNIQILPES-INSLYNLHTILLEDCRRLKKL-CKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSR 699 (779)
Q Consensus 622 ~L~~L~l~~n~i~~lp~~-~~~L~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~ 699 (779)
+|++|+|++|.++.+|.. +.++++|++|++++| .+..+ |..+.++++|++|++++|. +..++ ++.+++|+.|++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L~l 193 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANV 193 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEEEC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCc-CCccc--cccccccceeec
Confidence 888888888888888876 478888888888888 55555 4458888888888888887 44443 233333333211
Q ss_pred e-------------------------------------eeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccC
Q 040735 700 F-------------------------------------VVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQL 742 (779)
Q Consensus 700 ~-------------------------------------~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L 742 (779)
. .........+..+.++++|+ .|++.+.. +.......+..+
T Consensus 194 ~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~-~L~Ls~n~-l~~~~~~~~~~l 271 (390)
T 3o6n_A 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV-EVDLSYNE-LEKIMYHPFVKM 271 (390)
T ss_dssp CSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCS-EEECCSSC-CCEEESGGGTTC
T ss_pred ccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCcc-EEECCCCc-CCCcChhHcccc
Confidence 1 01111112234456666676 77776642 333344556667
Q ss_pred CCCCCCchHHHHhcc----CCCCCCCCeEEEeecCCCCCC
Q 040735 743 NTKPDFKIEIRVLDM----LKPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 743 ~~l~~L~~~~~~l~~----l~~~~~L~~L~l~~~~~~~~P 778 (779)
++|+.|....+.+.. ..++++|+.|+|++|.+..+|
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~ 311 (390)
T 3o6n_A 272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE 311 (390)
T ss_dssp SSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCG
T ss_pred ccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecC
Confidence 777777444433322 234567777777777766655
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=4.1e-15 Score=170.95 Aligned_cols=223 Identities=12% Similarity=0.112 Sum_probs=135.2
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccC-ccccCCC
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLP-NEIGNLK 621 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~ 621 (779)
..++.+.+..+...... ...+..+++|+.|.+.++. +....+..+.++++|++|+|++|.++.+| ..|++++
T Consensus 51 ~~l~~l~l~~~~l~~lp-~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp CCCSEEEESSCEESEEC-THHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCceEEEeeCCCCCCcC-HHHHccCCCCcEEECCCCC------CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 34555655544322211 1124567778888777654 33333334557888888888888887765 4467888
Q ss_pred ccceEecccccccccccc-cccccccceeeccCCcchhhc-hhhhcCccccceeecCCCcccccCCcccCCCCCCcccCc
Q 040735 622 HLRFLNLSRTNIQILPES-INSLYNLHTILLEDCRRLKKL-CKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSR 699 (779)
Q Consensus 622 ~L~~L~l~~n~i~~lp~~-~~~L~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~ 699 (779)
+|++|+|++|.++.+|+. |+++++|++|++++| .+..+ |..++++++|++|++++|. +..+| ++.+++|+.|++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l 199 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANV 199 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhc
Confidence 888888888888877766 477888888888888 44444 4457788888888888877 44443 223333333211
Q ss_pred e-------------------------------------eeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccC
Q 040735 700 F-------------------------------------VVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQL 742 (779)
Q Consensus 700 ~-------------------------------------~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L 742 (779)
. .+..+....+..+..+++|+ .|++.++. +.......+..+
T Consensus 200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~-~L~Ls~N~-l~~~~~~~~~~l 277 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV-EVDLSYNE-LEKIMYHPFVKM 277 (597)
T ss_dssp CSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCS-EEECCSSC-CCEEESGGGTTC
T ss_pred ccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCC-EEECCCCc-cCCCCHHHhcCc
Confidence 1 01111112234566677777 77776643 333445556677
Q ss_pred CCCCCCchHHHHhcc----CCCCCCCCeEEEeecCCCCCC
Q 040735 743 NTKPDFKIEIRVLDM----LKPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 743 ~~l~~L~~~~~~l~~----l~~~~~L~~L~l~~~~~~~~P 778 (779)
++|+.|....+.+.+ +.++++|+.|+|++|.+..+|
T Consensus 278 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~ 317 (597)
T 3oja_B 278 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE 317 (597)
T ss_dssp SSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCG
T ss_pred cCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccC
Confidence 777777555444433 234677888888887777665
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1.4e-15 Score=179.28 Aligned_cols=201 Identities=14% Similarity=0.160 Sum_probs=108.0
Q ss_pred ccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCC-CCc--cCccccCCC-------ccceEecccccccc
Q 040735 566 DVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYH-ISK--LPNEIGNLK-------HLRFLNLSRTNIQI 635 (779)
Q Consensus 566 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~--lp~~~~~l~-------~L~~L~l~~n~i~~ 635 (779)
++++|+.|.+.++. +.+.+|..+.++++|+.|+|++|. ++. +|..++++. +|++|+|++|.++.
T Consensus 489 ~L~~L~~L~Ls~N~------l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCP------NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562 (876)
T ss_dssp GCTTCCEEEEESCT------TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB
T ss_pred cCCCCCEEECcCCC------CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc
Confidence 56666666665543 344555555566666666666665 553 555444443 66666666666666
Q ss_pred ccc--ccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCC-CcccCceeeCCCCCCCchh
Q 040735 636 LPE--SINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTC-LLTLSRFVVGKDSGSGLRE 712 (779)
Q Consensus 636 lp~--~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~-L~~L~~~~~~~~~~~~~~~ 712 (779)
+|. .++++++|++|++++| .+..+| .++++++|++|++++|. +..+|..++++++ |++|++..+... .....
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~ 637 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNI 637 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCC--SCCSC
T ss_pred cCChhhhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCC--cCchh
Confidence 666 6666666666666666 444666 56666666666666666 4466666666666 666654433321 11122
Q ss_pred hhccc--cccceeEEcccCCCCCcch--hhh--ccCCCCCCCchHHHHhccCC-----CCCCCCeEEEeecCCCCCC
Q 040735 713 LKSLM--HLQGTLQISKLENVKDVGD--ASE--AQLNTKPDFKIEIRVLDMLK-----PHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 713 L~~L~--~L~~~L~i~~~~~~~~~~~--~~~--~~L~~l~~L~~~~~~l~~l~-----~~~~L~~L~l~~~~~~~~P 778 (779)
+..+. +|+ .|.+.++.....++. ... ..+.+|+.|....+.+..+. .+++|+.|+|++|.+..+|
T Consensus 638 ~~~~~~~~L~-~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 638 FNAKSVYVMG-SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp CCTTCSSCEE-EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred hhccccCCCC-EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccC
Confidence 22222 244 555544322211110 000 12234555544433333332 3567888888888777766
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=2.8e-15 Score=155.50 Aligned_cols=175 Identities=20% Similarity=0.195 Sum_probs=87.4
Q ss_pred CCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCC-CCcc-CccccC
Q 040735 542 SQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYH-ISKL-PNEIGN 619 (779)
Q Consensus 542 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l-p~~~~~ 619 (779)
+..++++.+.++.+.... ...+..+++|+.|.+.++. +....+..+.++++|++|++++|. +..+ |..|.+
T Consensus 31 ~~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNV------LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp CTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCc------cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 345555555544332211 1234455566666555543 222223334455666666666664 5554 445556
Q ss_pred CCccceEeccccccccc-ccccccccccceeeccCCcchhhchhh-hcCccccceeecCCCcccccCCcc-cCCCCCCcc
Q 040735 620 LKHLRFLNLSRTNIQIL-PESINSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSLEEMPKG-FGKLTCLLT 696 (779)
Q Consensus 620 l~~L~~L~l~~n~i~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~ 696 (779)
+++|++|++++|.++.+ |..+.++++|++|++++| .+..+|.. +.++++|++|++++|. +..+|.. ++.+++|++
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDR 181 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCE
Confidence 66666666666666544 344555666666666665 44444433 5556666666666665 4444432 555555655
Q ss_pred cCceeeCCCCCCCchhhhccccccceeEEcc
Q 040735 697 LSRFVVGKDSGSGLRELKSLMHLQGTLQISK 727 (779)
Q Consensus 697 L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~ 727 (779)
|++..+.. .......+.++++|+ .|++.+
T Consensus 182 L~l~~n~l-~~~~~~~~~~l~~L~-~L~l~~ 210 (285)
T 1ozn_A 182 LLLHQNRV-AHVHPHAFRDLGRLM-TLYLFA 210 (285)
T ss_dssp EECCSSCC-CEECTTTTTTCTTCC-EEECCS
T ss_pred EECCCCcc-cccCHhHccCccccc-EeeCCC
Confidence 54433221 111223344445555 555544
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.58 E-value=4.2e-15 Score=165.26 Aligned_cols=87 Identities=17% Similarity=0.259 Sum_probs=51.2
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhh--hcCCCCccEEEecCCCCCcc-Ccc-cc
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQR--LLNLPRLRVFSLHGYHISKL-PNE-IG 618 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l-p~~-~~ 618 (779)
..++++.+.++.+... ....+.++++|+.|.+.++. +.+..+.. +.++++|++|+|++|.++.+ |.. ++
T Consensus 79 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 151 (455)
T 3v47_A 79 SSLIILKLDYNQFLQL-ETGAFNGLANLEVLTLTQCN------LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151 (455)
T ss_dssp TTCCEEECTTCTTCEE-CTTTTTTCTTCCEEECTTSC------CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG
T ss_pred ccCCEEeCCCCccCcc-ChhhccCcccCCEEeCCCCC------CCccccCcccccCcccCCEEECCCCccCccCcccccC
Confidence 3455555544433211 12345556666666666544 44444443 44777777777777777765 443 67
Q ss_pred CCCccceEeccccccccc
Q 040735 619 NLKHLRFLNLSRTNIQIL 636 (779)
Q Consensus 619 ~l~~L~~L~l~~n~i~~l 636 (779)
++++|++|++++|.++.+
T Consensus 152 ~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp GCTTCCEEECTTCCBSCC
T ss_pred CCCcccEEeCCCCccccc
Confidence 777777777777777644
No 34
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=5.6e-15 Score=153.28 Aligned_cols=123 Identities=25% Similarity=0.239 Sum_probs=64.8
Q ss_pred ccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLH 647 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~ 647 (779)
++++.|.+.++. +....+..+.++++|++|+|++|.++.+|.. +.+++|++|+|++|.++.+|..+..+++|+
T Consensus 31 ~~l~~L~L~~N~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 103 (290)
T 1p9a_G 31 KDTTILHLSENL------LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALT 103 (290)
T ss_dssp TTCCEEECTTSC------CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCC
T ss_pred CCCCEEEcCCCc------CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCC
Confidence 345555555443 2222233344555666666666655555432 455556666666666665555555556666
Q ss_pred eeeccCCcchhhch-hhhcCccccceeecCCCcccccCCcc-cCCCCCCcccCc
Q 040735 648 TILLEDCRRLKKLC-KNMGNLMKLHHLRNPNVHSLEEMPKG-FGKLTCLLTLSR 699 (779)
Q Consensus 648 ~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~ 699 (779)
+|++++| .+..+| ..+.++++|++|++++|. +..+|.+ +..+++|+.|++
T Consensus 104 ~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 104 VLDVSFN-RLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp EEECCSS-CCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCC-cCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEEC
Confidence 6666655 444444 235555666666666655 3344433 345555555543
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.57 E-value=1.4e-14 Score=154.68 Aligned_cols=173 Identities=20% Similarity=0.290 Sum_probs=91.3
Q ss_pred hcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCcccccee
Q 040735 594 LLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHL 673 (779)
Q Consensus 594 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 673 (779)
+.++++|++|++++|.++.+|. +.++++|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|++|
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L 182 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSL 182 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEE
T ss_pred HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh-hccCCCCCEE
Confidence 3355555555555555555443 55555555555555533322333555555555555555 3444433 5555556666
Q ss_pred ecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHH
Q 040735 674 RNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIR 753 (779)
Q Consensus 674 ~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~ 753 (779)
++++|. +..++. +..+++|+.|++..+.. ..+..+..+++|+ .|.+.++.. ...+. +..+++|+.|....+
T Consensus 183 ~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l---~~~~~~~~~~~L~-~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 183 SLNYNQ-IEDISP-LASLTSLHYFTAYVNQI---TDITPVANMTRLN-SLKIGNNKI-TDLSP--LANLSQLTWLEIGTN 253 (347)
T ss_dssp ECTTSC-CCCCGG-GGGCTTCCEEECCSSCC---CCCGGGGGCTTCC-EEECCSSCC-CCCGG--GTTCTTCCEEECCSS
T ss_pred EccCCc-cccccc-ccCCCccceeecccCCC---CCCchhhcCCcCC-EEEccCCcc-CCCcc--hhcCCCCCEEECCCC
Confidence 666555 444443 55555555554333221 1222355666666 676665432 22222 566677777644333
Q ss_pred Hh---ccCCCCCCCCeEEEeecCCCCCC
Q 040735 754 VL---DMLKPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 754 ~l---~~l~~~~~L~~L~l~~~~~~~~P 778 (779)
.+ +.+..+++|++|++++|.++.+|
T Consensus 254 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 281 (347)
T 4fmz_A 254 QISDINAVKDLTKLKMLNVGSNQISDIS 281 (347)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred ccCCChhHhcCCCcCEEEccCCccCCCh
Confidence 22 34556778888888888776654
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.56 E-value=8.8e-15 Score=163.68 Aligned_cols=202 Identities=19% Similarity=0.193 Sum_probs=145.6
Q ss_pred ccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCcc-CccccCCCccceEecccccccccccc-cccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKL-PNEIGNLKHLRFLNLSRTNIQILPES-INSLYN 645 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~ 645 (779)
.+++.|.+.++. +....+..+.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+|.. |.++++
T Consensus 32 ~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKNR------IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECCSSC------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCcEEECCCCc------cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 578889888765 4443345566999999999999999977 78899999999999999999999875 789999
Q ss_pred cceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEE
Q 040735 646 LHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQI 725 (779)
Q Consensus 646 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i 725 (779)
|++|+|++|......|..+.++++|++|++++|......|..++.+++|++|++..+.. .......+.++++|+ .|.+
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~-~L~l 183 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLI-VLRL 183 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCCHHHHTTCTTCC-EEEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccChhHhcccCCCc-EEeC
Confidence 99999999944444466799999999999999995444556799999999998665533 223334577888888 8888
Q ss_pred cccCCCCCcchhhhccCCCCCCCchHHHH-h----ccCCCCCCCCeEEEeecCCCCCC
Q 040735 726 SKLENVKDVGDASEAQLNTKPDFKIEIRV-L----DMLKPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 726 ~~~~~~~~~~~~~~~~L~~l~~L~~~~~~-l----~~l~~~~~L~~L~l~~~~~~~~P 778 (779)
.++. +.......+..+++|+.|...... + .......+|++|+|++|.++.+|
T Consensus 184 ~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 240 (477)
T 2id5_A 184 RHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240 (477)
T ss_dssp ESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred CCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence 7643 334445556677777776432211 1 11111235555555555554444
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.56 E-value=5.2e-15 Score=164.49 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=69.3
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhh-hcCCCCccEEEecCCCCCcc-Ccccc
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQR-LLNLPRLRVFSLHGYHISKL-PNEIG 618 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l-p~~~~ 618 (779)
.+..++++.+.++.+... ....+.++++|+.|.+.++. +...+++. +.++++|++|+|++|.++.+ |..|+
T Consensus 28 l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~------~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQT------PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp CCTTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCS------TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CCCccCEEEecCCccCcC-ChhHhccCccccEEECcCCc------ccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 345666776666544321 12345566666666666543 22233222 23566666666666666544 45556
Q ss_pred CCCccceEecccccccc-cccc--cccccccceeeccCCcchhhc-hhh-hcCccccceeecCCCc
Q 040735 619 NLKHLRFLNLSRTNIQI-LPES--INSLYNLHTILLEDCRRLKKL-CKN-MGNLMKLHHLRNPNVH 679 (779)
Q Consensus 619 ~l~~L~~L~l~~n~i~~-lp~~--~~~L~~L~~L~l~~~~~~~~l-p~~-~~~l~~L~~L~l~~~~ 679 (779)
++++|++|+|++|.++. +|.. ++++++|++|++++| .+..+ |.. +.++++|++|++++|.
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCc
Confidence 66666666666666553 3333 555566666666655 33333 333 4555555555555554
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.55 E-value=2.7e-15 Score=173.23 Aligned_cols=203 Identities=14% Similarity=0.093 Sum_probs=133.3
Q ss_pred ccccccceEecccCcccccccccchH--hhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccc--cc
Q 040735 564 VSDVERLRTFLPVNLSDYRRNYLAWS--VLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILP--ES 639 (779)
Q Consensus 564 ~~~~~~Lr~l~~~~~~~~~~~~~~~~--~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp--~~ 639 (779)
+..+++|+.|.+.++. +... .+..+.++++|+.|++++|.++.+|..+.++++|++|++++|.+..++ ..
T Consensus 346 ~~~l~~L~~L~ls~n~------l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNA------LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp CCCCTTCCEEECCSSC------EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred hccCCCCCEEECcCCc------cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhh
Confidence 3455556666555543 2221 244455777888888888887777777788888888888888877654 36
Q ss_pred cccccccceeeccCCcchhhchhhhcCccccceeecCCCccccc-CCcccCCCCCCcccCceeeCCCCCCCchhhhcccc
Q 040735 640 INSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEE-MPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMH 718 (779)
Q Consensus 640 ~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~ 718 (779)
+.++++|++|++++|......|..+.++++|++|++++|...+. +|..++.+++|++|++..+.. .+.....+.++++
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL-EQISWGVFDTLHR 498 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-CEECTTTTTTCTT
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC-CccChhhhccccc
Confidence 77888888888888855555667778888888888888874442 566778888888876544432 2223344666777
Q ss_pred ccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhccC----CCCC-CCCeEEEeecCCC
Q 040735 719 LQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDML----KPHQ-KLEELTIAGYGGT 775 (779)
Q Consensus 719 L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~l----~~~~-~L~~L~l~~~~~~ 775 (779)
|+ .|.+.++ .+....+..+..+++|+.|+...+.+..+ ..++ +|++|++++|++.
T Consensus 499 L~-~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 499 LQ-LLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CC-EEECCSS-CCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CC-EEECCCC-cCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence 77 7777765 33444455667777777775555444332 2333 6888888887764
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.55 E-value=2.4e-14 Score=153.02 Aligned_cols=211 Identities=15% Similarity=0.217 Sum_probs=137.7
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCc
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKH 622 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~ 622 (779)
..++.+.+.++.... ++.+..+++|+.|.+.++. +.. ++. +.++++|+.|++++|.....+..+..+++
T Consensus 88 ~~L~~L~L~~n~i~~---~~~~~~l~~L~~L~l~~n~------i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~ 156 (347)
T 4fmz_A 88 VKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDN------ISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTG 156 (347)
T ss_dssp TTCCEEECCSSCCCC---CGGGTTCTTCSEEECTTSC------CCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTT
T ss_pred CcCCEEEccCCcccC---chHHcCCCcCCEEECcCCc------ccC-chh-hccCCceeEEECCCCCCcccccchhhCCC
Confidence 445666665543322 3456667777777776654 221 222 55788888888888855544455788888
Q ss_pred cceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceee
Q 040735 623 LRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVV 702 (779)
Q Consensus 623 L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~ 702 (779)
|++|++++|.+..++. +..+++|++|++++| .+..+|. +..+++|++|++++|. +..++. ++.+++|++|++..+
T Consensus 157 L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 157 LNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNN 231 (347)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS
T ss_pred CcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCC
Confidence 8888888888887766 778888888888888 6666665 7788888888888887 555554 777788888765444
Q ss_pred CCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHh---ccCCCCCCCCeEEEeecCCCC
Q 040735 703 GKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVL---DMLKPHQKLEELTIAGYGGTK 776 (779)
Q Consensus 703 ~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l---~~l~~~~~L~~L~l~~~~~~~ 776 (779)
... .+..+..+++|+ .|.+.++. +... ..+..+++|+.|....+.+ ..+..+++|+.|+|++|.+..
T Consensus 232 ~l~---~~~~~~~l~~L~-~L~l~~n~-l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 232 KIT---DLSPLANLSQLT-WLEIGTNQ-ISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp CCC---CCGGGTTCTTCC-EEECCSSC-CCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCG
T ss_pred ccC---CCcchhcCCCCC-EEECCCCc-cCCC--hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCC
Confidence 322 233366677777 77776642 2222 2356677777774443333 234456788888888887654
No 40
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=2e-14 Score=147.68 Aligned_cols=177 Identities=25% Similarity=0.310 Sum_probs=103.9
Q ss_pred ccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCcc-ccCCCccceEecccccccccccc-cccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNE-IGNLKHLRFLNLSRTNIQILPES-INSLYN 645 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~ 645 (779)
++++.|.+.++. +....+..+.++++|++|+|++|.++.+|.. |.++++|++|+|++|.++.+|.. +.++++
T Consensus 37 ~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQSNK------LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110 (270)
T ss_dssp TTCSEEECCSSC------CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSS
T ss_pred CCCCEEECcCCC------CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccC
Confidence 456677666554 2222122344677777777777777776644 46677777777777777766543 467777
Q ss_pred cceeeccCCcchhhchh-hhcCccccceeecCCCcccccCCcc-cCCCCCCcccCceeeCCCCCCCchhhhcccccccee
Q 040735 646 LHTILLEDCRRLKKLCK-NMGNLMKLHHLRNPNVHSLEEMPKG-FGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTL 723 (779)
Q Consensus 646 L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L 723 (779)
|++|++++| .+..+|. .+..+++|++|++++|. +..+|.. ++.+++|++|++..+... ......+.++++|+ .|
T Consensus 111 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L 186 (270)
T 2o6q_A 111 LAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELK-TL 186 (270)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCC-EE
T ss_pred CCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcC-EE
Confidence 777777777 4555543 36677777777777776 5555554 566777777665433221 11222345556666 66
Q ss_pred EEcccCCCCCcchhhhccCCCCCCCchHHHHhccCCCCCCCCeEEEeecCC
Q 040735 724 QISKLENVKDVGDASEAQLNTKPDFKIEIRVLDMLKPHQKLEELTIAGYGG 774 (779)
Q Consensus 724 ~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~l~~~~~L~~L~l~~~~~ 774 (779)
++.+. .+..++.. .+..+++|+.|+|++|++
T Consensus 187 ~L~~N-~l~~~~~~-------------------~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 187 KLDNN-QLKRVPEG-------------------AFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp ECCSS-CCSCCCTT-------------------TTTTCTTCCEEECCSSCB
T ss_pred ECCCC-cCCcCCHH-------------------HhccccCCCEEEecCCCe
Confidence 66543 22222221 233456777777777754
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.54 E-value=6.3e-15 Score=170.17 Aligned_cols=147 Identities=18% Similarity=0.100 Sum_probs=114.7
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCcc-CccccC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKL-PNEIGN 619 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~ 619 (779)
++..++++.+.++...... ...+.++++|+.|.+.++. +....|..+.++++|++|+|++|.++.+ |..|++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCCCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 5577888888776554322 2357789999999988765 4343344556899999999999999977 788999
Q ss_pred CCccceEecccccccccc-cccccccccceeeccCCcchh--hchhhhcCccccceeecCCCcccccCCcccCCCCCCc
Q 040735 620 LKHLRFLNLSRTNIQILP-ESINSLYNLHTILLEDCRRLK--KLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLL 695 (779)
Q Consensus 620 l~~L~~L~l~~n~i~~lp-~~~~~L~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~ 695 (779)
+++|++|+|++|.++.+| ..++++++|++|++++| .+. .+|..++++++|++|++++|...+..|..++.+++|+
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 999999999999999876 67999999999999999 544 5789999999999999999984443444566665554
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.54 E-value=2.2e-14 Score=148.63 Aligned_cols=198 Identities=19% Similarity=0.219 Sum_probs=141.2
Q ss_pred cccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCcc-CccccCCCccceEeccccc-cccc-ccccccc
Q 040735 567 VERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKL-PNEIGNLKHLRFLNLSRTN-IQIL-PESINSL 643 (779)
Q Consensus 567 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~-i~~l-p~~~~~L 643 (779)
.++|+.|.+.++. +....+..+.++++|++|++++|.++.+ |..|.++++|++|++++|. ++.+ |..+..+
T Consensus 31 ~~~l~~L~l~~n~------i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 31 PAASQRIFLHGNR------ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp CTTCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred CCCceEEEeeCCc------CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence 4678888887765 3332233345889999999999998876 6788889999999999997 8877 6678889
Q ss_pred cccceeeccCCcchhhc-hhhhcCccccceeecCCCcccccCCcc-cCCCCCCcccCceeeCCCCCCCchhhhccccccc
Q 040735 644 YNLHTILLEDCRRLKKL-CKNMGNLMKLHHLRNPNVHSLEEMPKG-FGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQG 721 (779)
Q Consensus 644 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~ 721 (779)
++|++|++++| .+..+ |..+.++++|++|++++|. +..+|.. ++.+++|++|++..+... ......+..+++|+
T Consensus 105 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~- 180 (285)
T 1ozn_A 105 GRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLD- 180 (285)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCC-
T ss_pred cCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccC-
Confidence 99999999998 55555 5668889999999999998 5566654 788888888876544321 11222366677777
Q ss_pred eeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc-----CCCCCCCCeEEEeecCCC
Q 040735 722 TLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM-----LKPHQKLEELTIAGYGGT 775 (779)
Q Consensus 722 ~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~-----l~~~~~L~~L~l~~~~~~ 775 (779)
.|.+.+.. +.......+..+++|+.|....+.+.. +..+++|++|+|++|++.
T Consensus 181 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 181 RLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred EEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 77777643 334445556777888887554443332 345788999999988653
No 43
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=4.5e-15 Score=152.69 Aligned_cols=191 Identities=22% Similarity=0.245 Sum_probs=135.9
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCc-cccCCC
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPN-EIGNLK 621 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~ 621 (779)
..++.+.+..+.. ..++.+..+++|+.|.+.++. +.. ++.+.++++|++|++++|.++.+|. .+++++
T Consensus 41 ~~L~~L~l~~~~i---~~~~~l~~l~~L~~L~l~~n~------l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 41 NSIDQIIANNSDI---KSVQGIQYLPNVRYLALGGNK------LHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp TTCCEEECTTSCC---CCCTTGGGCTTCCEEECTTSC------CCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cceeeeeeCCCCc---ccccccccCCCCcEEECCCCC------CCC--chhhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 4567777665543 334567788899999888765 222 3456688999999999999988764 468899
Q ss_pred ccceEecccccccccccc-cccccccceeeccCCcchhhchhh-hcCccccceeecCCCcccccCCcc-cCCCCCCcccC
Q 040735 622 HLRFLNLSRTNIQILPES-INSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSLEEMPKG-FGKLTCLLTLS 698 (779)
Q Consensus 622 ~L~~L~l~~n~i~~lp~~-~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~ 698 (779)
+|++|++++|.++.+|+. ++++++|++|++++| .+..+|.. +..+++|++|++++|. +..+|.. ++.+++|++|+
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEE
Confidence 999999999999988665 788999999999998 66677655 6889999999999998 5566554 68889999887
Q ss_pred ceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhc
Q 040735 699 RFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLD 756 (779)
Q Consensus 699 ~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~ 756 (779)
+..+.. .+.....+.++++|+ .|.+.++... ..+++++.|....+.+.
T Consensus 188 L~~N~l-~~~~~~~~~~l~~L~-~L~l~~N~~~--------~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 188 LYQNQL-KSVPDGVFDRLTSLQ-YIWLHDNPWD--------CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp CCSSCC-SCCCTTTTTTCTTCC-EEECCSSCBC--------CCTTTTHHHHHHHHHTG
T ss_pred CCCCcC-CccCHHHHhCCcCCC-EEEccCCCcc--------ccCcHHHHHHHHHHhCC
Confidence 655433 222333467777787 7887764322 23445555544444433
No 44
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=3.5e-14 Score=147.26 Aligned_cols=198 Identities=17% Similarity=0.063 Sum_probs=153.3
Q ss_pred cccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCcc-CccccCCCccceEecccccccccccccc
Q 040735 563 SVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKL-PNEIGNLKHLRFLNLSRTNIQILPESIN 641 (779)
Q Consensus 563 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~i~~lp~~~~ 641 (779)
.+.++++++.+.+.++. + ..+|..+. +.|+.|+|++|.++.+ |..|.++++|++|+|++|.++.+|.. +
T Consensus 5 ~~~~l~~l~~l~~~~~~------l-~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~ 74 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRN------L-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-G 74 (290)
T ss_dssp EEECSTTCCEEECTTSC------C-SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-S
T ss_pred cccccCCccEEECCCCC------C-CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-C
Confidence 35577888888877654 2 23454443 6899999999999977 47799999999999999999999875 8
Q ss_pred cccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCC-cccCCCCCCcccCceeeCCCCCCCchhhhcccccc
Q 040735 642 SLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMP-KGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQ 720 (779)
Q Consensus 642 ~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~ 720 (779)
.+++|++|++++| .+..+|..+..+++|++|++++|. +..+| ..|+.+++|++|++..+... ......+..+++|+
T Consensus 75 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLE 151 (290)
T ss_dssp CCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC
T ss_pred CCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCC
Confidence 9999999999999 888999999999999999999999 66776 45899999999976554332 22233366778888
Q ss_pred ceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhccC----CCCCCCCeEEEeecCCC
Q 040735 721 GTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDML----KPHQKLEELTIAGYGGT 775 (779)
Q Consensus 721 ~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~l----~~~~~L~~L~l~~~~~~ 775 (779)
.|.+.++ .+..++...+..+++|+.|....+.+..+ ...++|+.|+|++|+..
T Consensus 152 -~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 152 -KLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -EEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred -EEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 8888764 34556666778888998886655554443 34568999999998764
No 45
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=2.3e-15 Score=158.17 Aligned_cols=199 Identities=17% Similarity=0.151 Sum_probs=96.6
Q ss_pred ccccceEecccCcccccccccchHhhhhh--cCCCCccEEEecCCCCCccCccccCC-----CccceEecccccccccc-
Q 040735 566 DVERLRTFLPVNLSDYRRNYLAWSVLQRL--LNLPRLRVFSLHGYHISKLPNEIGNL-----KHLRFLNLSRTNIQILP- 637 (779)
Q Consensus 566 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~lp~~~~~l-----~~L~~L~l~~n~i~~lp- 637 (779)
++++|+.|.+.++. +.+.+|..+ ..+++|++|+|++|.++.+|..++++ ++|++|+|++|.++.+|
T Consensus 93 ~l~~L~~L~L~~n~------l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLE------VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEB------CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred CcCCccEEEccCCc------ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence 34555555555433 333444443 35556666666666655555555544 55666666666655543
Q ss_pred cccccccccceeeccCCcchhh--chhhh--cCccccceeecCCCcccccCC---cc-cCCCCCCcccCceeeCCCCCCC
Q 040735 638 ESINSLYNLHTILLEDCRRLKK--LCKNM--GNLMKLHHLRNPNVHSLEEMP---KG-FGKLTCLLTLSRFVVGKDSGSG 709 (779)
Q Consensus 638 ~~~~~L~~L~~L~l~~~~~~~~--lp~~~--~~l~~L~~L~l~~~~~~~~~p---~~-~~~L~~L~~L~~~~~~~~~~~~ 709 (779)
..++++++|++|++++|...+. +|..+ .++++|++|++++|. +..+| .. +.++++|++|++..+.......
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 4555566666666665533322 23333 555566666666655 33222 11 2345555555443332211111
Q ss_pred chhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc---CCCCCCCCeEEEeecCCCC
Q 040735 710 LRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM---LKPHQKLEELTIAGYGGTK 776 (779)
Q Consensus 710 ~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~---l~~~~~L~~L~l~~~~~~~ 776 (779)
...+..+++|+ .|++.++. +..++...+ ++|+.|+...+.+.. +..+++|++|+|++|+++.
T Consensus 246 ~~~~~~l~~L~-~L~Ls~N~-l~~ip~~~~---~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 246 APSCDWPSQLN-SLNLSFTG-LKQVPKGLP---AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSCCCCCTTCC-EEECTTSC-CSSCCSSCC---SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred hhhhhhcCCCC-EEECCCCc-cChhhhhcc---CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence 22333344454 55554432 122222221 344444333332222 4456788899999887754
No 46
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=1.2e-14 Score=149.88 Aligned_cols=178 Identities=20% Similarity=0.255 Sum_probs=87.9
Q ss_pred hcCCCCccEEEecCCCCCccC-ccccCCCccceEecccccccccc-cccccccccceeeccCCcchhhchh-hhcCcccc
Q 040735 594 LLNLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILP-ESINSLYNLHTILLEDCRRLKKLCK-NMGNLMKL 670 (779)
Q Consensus 594 ~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp-~~~~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L 670 (779)
+.++++|++|++++|.++.++ ..|.++++|++|+|++|.++.+| ..+.++++|++|++++| .+..++. .+.++++|
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTC
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC-CccccCchhcccCCCC
Confidence 335666666666666665554 34556666666666666666553 34556666666666665 4444433 35566666
Q ss_pred ceeecCCCccccc--CCcccCCCCCCcccCceeeCCCC--CCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCC
Q 040735 671 HHLRNPNVHSLEE--MPKGFGKLTCLLTLSRFVVGKDS--GSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKP 746 (779)
Q Consensus 671 ~~L~l~~~~~~~~--~p~~~~~L~~L~~L~~~~~~~~~--~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~ 746 (779)
++|++++|. +.. +|..++++++|++|++..+.... ...+..+.+|+.|.-.|.+.+. .+...+...+. ..+|+
T Consensus 127 ~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~-~~~L~ 203 (276)
T 2z62_A 127 KELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFK-EIRLK 203 (276)
T ss_dssp CEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSC-SCCEE
T ss_pred CEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC-cccccCccccC-CCccc
Confidence 666666665 332 45556666666665543322211 1123333333333212333322 11222222221 22444
Q ss_pred CCchHHHHhcc-----CCCCCCCCeEEEeecCCC
Q 040735 747 DFKIEIRVLDM-----LKPHQKLEELTIAGYGGT 775 (779)
Q Consensus 747 ~L~~~~~~l~~-----l~~~~~L~~L~l~~~~~~ 775 (779)
.|....+.+.. +..+++|++|+|++|++.
T Consensus 204 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred EEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 44333222222 344678888888888665
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.52 E-value=7e-15 Score=167.61 Aligned_cols=150 Identities=15% Similarity=0.232 Sum_probs=115.7
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCcc-ccC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNE-IGN 619 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~ 619 (779)
+...++++.+.++.+.... ...+.++++|+.|.+.++. +....+..+.++++|++|+|++|.++.+|+. |++
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSR------INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp CCTTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred CCCCccEEECcCCccCccC-hhhhhcCCcccEEECCCCC------cCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 3467888888877554321 2457788999999988865 4443445566899999999999999988754 899
Q ss_pred CCccceEecccccccc--cccccccccccceeeccCCcchhhchh-hhcCccccceeecCCCcccccCCcccCCCCCCcc
Q 040735 620 LKHLRFLNLSRTNIQI--LPESINSLYNLHTILLEDCRRLKKLCK-NMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLT 696 (779)
Q Consensus 620 l~~L~~L~l~~n~i~~--lp~~~~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~ 696 (779)
+++|++|++++|.++. +|..++++++|++|++++|..++.+|. .+.++++|++|++++|...+..|..++++++|++
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 9999999999999984 467889999999999999865777874 6889999999999998855556777766555554
Q ss_pred c
Q 040735 697 L 697 (779)
Q Consensus 697 L 697 (779)
|
T Consensus 177 L 177 (549)
T 2z81_A 177 L 177 (549)
T ss_dssp E
T ss_pred E
Confidence 4
No 48
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.52 E-value=1.5e-14 Score=157.15 Aligned_cols=199 Identities=19% Similarity=0.216 Sum_probs=142.7
Q ss_pred ccccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCccC-ccccCCCccceEeccccccccccc-cccc
Q 040735 566 DVERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPE-SINS 642 (779)
Q Consensus 566 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~-~~~~ 642 (779)
.+.+++.|.+.++. + ..+|..++ ++++|++|++++|.++.+| ..|+++++|++|+|++|.++.+|+ .+++
T Consensus 43 ~l~~l~~l~l~~~~------l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNST------M-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGCCCSEEEEESCE------E-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCceEEEecCCc------h-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 56788888887754 2 34566655 8999999999999999876 589999999999999999998854 5899
Q ss_pred ccccceeeccCCcchhhchhh-hcCccccceeecCCCcccccC-CcccCCCCCCcccCceeeCCCCCCCchhhhccc---
Q 040735 643 LYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSLEEM-PKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLM--- 717 (779)
Q Consensus 643 L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~-p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~--- 717 (779)
+++|++|++++| .+..+|.. +.++++|++|++++|. +..+ |..++.+++|++|++..+... ...+..+++|.
T Consensus 116 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~L~~L~ 192 (390)
T 3o6n_A 116 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHAN 192 (390)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS-BCCGGGCTTCSEEE
T ss_pred CCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC-ccccccccccceee
Confidence 999999999999 78889887 5899999999999999 4455 455899999999976554332 12223333322
Q ss_pred ----------------------------------cccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHh-----ccC
Q 040735 718 ----------------------------------HLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVL-----DML 758 (779)
Q Consensus 718 ----------------------------------~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l-----~~l 758 (779)
+|+ .|.+.+.. +.. ...+..+++|+.|....+.+ ..+
T Consensus 193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~-~L~l~~n~-l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT-ILKLQHNN-LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp CCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCC-EEECCSSC-CCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cccccccccCCCCcceEEECCCCeeeecccccccccc-EEECCCCC-Ccc--cHHHcCCCCccEEECCCCcCCCcChhHc
Confidence 222 33333221 111 13456677777774444332 345
Q ss_pred CCCCCCCeEEEeecCCCCCC
Q 040735 759 KPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 759 ~~~~~L~~L~l~~~~~~~~P 778 (779)
..+++|++|+|++|.++.+|
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~ 288 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVALN 288 (390)
T ss_dssp TTCSSCCEEECCSSCCCEEE
T ss_pred cccccCCEEECCCCcCcccC
Confidence 56788999999988776544
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.52 E-value=3.8e-14 Score=150.41 Aligned_cols=197 Identities=16% Similarity=0.165 Sum_probs=145.7
Q ss_pred cccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCcc-CccccCCCccceEecccccccccccccccccc
Q 040735 567 VERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKL-PNEIGNLKHLRFLNLSRTNIQILPESINSLYN 645 (779)
Q Consensus 567 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~ 645 (779)
.++|+.|.+.++. +....+..+.++++|++|++++|.++.+ |..|+++++|++|+|++|.++.+|..+. ++
T Consensus 53 ~~~l~~L~l~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~ 124 (332)
T 2ft3_A 53 SPDTTLLDLQNND------ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SS 124 (332)
T ss_dssp CTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TT
T ss_pred CCCCeEEECCCCc------CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--cc
Confidence 3688898888765 3333344566999999999999999977 6789999999999999999999998876 79
Q ss_pred cceeeccCCcchhhchhh-hcCccccceeecCCCccc--ccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccce
Q 040735 646 LHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSL--EEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGT 722 (779)
Q Consensus 646 L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~--~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~ 722 (779)
|++|++++| .+..+|.. +.++++|++|++++|... +..|..++.+ +|++|++..+.... ....+. ++|+ .
T Consensus 125 L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~--l~~~~~--~~L~-~ 197 (332)
T 2ft3_A 125 LVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG--IPKDLP--ETLN-E 197 (332)
T ss_dssp CCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--CCSSSC--SSCS-C
T ss_pred CCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--cCcccc--CCCC-E
Confidence 999999999 67777664 899999999999999842 2455667777 88888765443221 111111 4555 6
Q ss_pred eEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc-----CCCCCCCCeEEEeecCCCCCCC
Q 040735 723 LQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM-----LKPHQKLEELTIAGYGGTKFPT 779 (779)
Q Consensus 723 L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~-----l~~~~~L~~L~l~~~~~~~~P~ 779 (779)
|.+.+. .+.......+..+++|+.|....+.+.. +..+++|++|+|++|.++.+|.
T Consensus 198 L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 258 (332)
T 2ft3_A 198 LHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258 (332)
T ss_dssp CBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT
T ss_pred EECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh
Confidence 666553 3334444567788899988665554443 3447899999999999988874
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.52 E-value=4e-14 Score=150.08 Aligned_cols=197 Identities=19% Similarity=0.165 Sum_probs=147.5
Q ss_pred ccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCcc-CccccCCCccceEeccccccccccccccccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKL-PNEIGNLKHLRFLNLSRTNIQILPESINSLYNL 646 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L 646 (779)
++++.|.+.++. +....+..+.++++|++|+|++|.++.+ |..|+++++|++|++++|.++.+|..+. ++|
T Consensus 52 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNK------ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL 123 (330)
T ss_dssp TTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred CCCeEEECCCCc------CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence 678888888765 3332233456999999999999999977 7889999999999999999999998776 799
Q ss_pred ceeeccCCcchhhchh-hhcCccccceeecCCCccc--ccCCcccCCCCCCcccCceeeCCCCCCCchhhhcccccccee
Q 040735 647 HTILLEDCRRLKKLCK-NMGNLMKLHHLRNPNVHSL--EEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTL 723 (779)
Q Consensus 647 ~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~--~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L 723 (779)
++|++++| .+..+|. .+.++++|++|++++|... +..|..++++++|++|++..+.... ....+ ..+|+ .|
T Consensus 124 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~--~~~L~-~L 197 (330)
T 1xku_A 124 QELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQGL--PPSLT-EL 197 (330)
T ss_dssp CEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCSSC--CTTCS-EE
T ss_pred cEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCccc--cccCC-EE
Confidence 99999999 6666654 5899999999999999842 2456678889999998765443221 11111 15666 77
Q ss_pred EEcccCCCCCcchhhhccCCCCCCCchHHHHhc-----cCCCCCCCCeEEEeecCCCCCCC
Q 040735 724 QISKLENVKDVGDASEAQLNTKPDFKIEIRVLD-----MLKPHQKLEELTIAGYGGTKFPT 779 (779)
Q Consensus 724 ~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~-----~l~~~~~L~~L~l~~~~~~~~P~ 779 (779)
.+.+.. +.......+..+++|+.|....+.+. .+..+++|++|+|++|.++.+|.
T Consensus 198 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 257 (330)
T 1xku_A 198 HLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257 (330)
T ss_dssp ECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred ECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence 777643 44444566778888988865554443 34457899999999999988874
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.52 E-value=5.3e-14 Score=160.68 Aligned_cols=104 Identities=15% Similarity=0.209 Sum_probs=61.5
Q ss_pred CCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCC
Q 040735 542 SQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLK 621 (779)
Q Consensus 542 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~ 621 (779)
+..++++.+.++.+.... ...+.++++|+.|.+.++. +....|..+.++++|++|+|++|.++.+|.. .++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 121 (562)
T 3a79_B 51 PPRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNR------IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMA 121 (562)
T ss_dssp CTTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCC------CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCT
T ss_pred CCCcCEEECCCCCccccC-hhhhccCCCccEEECCCCC------CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccc
Confidence 356667766665443221 2345667777777776654 3333334444666677777777766666654 566
Q ss_pred ccceEecccccccccc--cccccccccceeeccCC
Q 040735 622 HLRFLNLSRTNIQILP--ESINSLYNLHTILLEDC 654 (779)
Q Consensus 622 ~L~~L~l~~n~i~~lp--~~~~~L~~L~~L~l~~~ 654 (779)
+|++|+|++|.++.+| ..++++++|++|++++|
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred cCCEEECCCCCccccCchHhhcccCcccEEecCCC
Confidence 6666666666666543 45666666666666555
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=2.6e-15 Score=157.76 Aligned_cols=182 Identities=15% Similarity=0.156 Sum_probs=137.8
Q ss_pred CCCCccEEEecCCCCC-ccCccc--cCCCccceEecccccccccccccccc-----cccceeeccCCcchhhch-hhhcC
Q 040735 596 NLPRLRVFSLHGYHIS-KLPNEI--GNLKHLRFLNLSRTNIQILPESINSL-----YNLHTILLEDCRRLKKLC-KNMGN 666 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~-~lp~~~--~~l~~L~~L~l~~n~i~~lp~~~~~L-----~~L~~L~l~~~~~~~~lp-~~~~~ 666 (779)
++++|++|+|++|.++ .+|..+ +.+++|++|+|++|.++.+|..++.+ ++|++|++++| .+..+| ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhcc
Confidence 7899999999999998 678776 89999999999999999889888888 99999999999 556665 77999
Q ss_pred ccccceeecCCCccccc--CCccc--CCCCCCcccCceeeCCCCC-CCc-hhhhccccccceeEEcccCCCCCcchhhhc
Q 040735 667 LMKLHHLRNPNVHSLEE--MPKGF--GKLTCLLTLSRFVVGKDSG-SGL-RELKSLMHLQGTLQISKLENVKDVGDASEA 740 (779)
Q Consensus 667 l~~L~~L~l~~~~~~~~--~p~~~--~~L~~L~~L~~~~~~~~~~-~~~-~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~ 740 (779)
+++|++|++++|...+. +|..+ +.+++|++|++..+..... ... .-+.++++|+ .|++.++......+...+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ-GLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS-EEECTTSCCCSSCCCSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC-EEECCCCcCCcccchhhhh
Confidence 99999999999985544 34455 8899999997654432210 111 1234667888 8888875433322234456
Q ss_pred cCCCCCCCchHHHHhccCCC--CCCCCeEEEeecCCCCCCC
Q 040735 741 QLNTKPDFKIEIRVLDMLKP--HQKLEELTIAGYGGTKFPT 779 (779)
Q Consensus 741 ~L~~l~~L~~~~~~l~~l~~--~~~L~~L~l~~~~~~~~P~ 779 (779)
.+++|+.|....+.+..+.. .++|++|+|++|.++.+|.
T Consensus 251 ~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp CCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCCC
T ss_pred hcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCChh
Confidence 67888888766665554422 2689999999999988773
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=1.4e-14 Score=166.47 Aligned_cols=200 Identities=19% Similarity=0.191 Sum_probs=143.3
Q ss_pred ccccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCccC-ccccCCCccceEeccccccccccc-cccc
Q 040735 566 DVERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPE-SINS 642 (779)
Q Consensus 566 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~-~~~~ 642 (779)
.+.+++.+.+.++. + ..+|+.++ ++++|++|+|++|.++.+| ..|+++++|++|+|++|.++.+|+ .|++
T Consensus 49 ~l~~l~~l~l~~~~------l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNST------M-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSCE------E-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCCC------C-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 46778888777654 2 44566665 8999999999999999876 589999999999999999998865 4799
Q ss_pred ccccceeeccCCcchhhchhh-hcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhcccc---
Q 040735 643 LYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMH--- 718 (779)
Q Consensus 643 L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~--- 718 (779)
+++|++|+|++| .+..+|.. ++++++|++|++++|.+.+..|..++.+++|++|++..+... +..+..+++|..
T Consensus 122 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L~~L~l 199 (597)
T 3oja_B 122 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANV 199 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCCGGGCTTCSEEEC
T ss_pred CCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcChhhhhhhhhhhc
Confidence 999999999999 78888887 589999999999999954444556999999999976544332 222233333221
Q ss_pred ----------------------------------ccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHh-----ccCC
Q 040735 719 ----------------------------------LQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVL-----DMLK 759 (779)
Q Consensus 719 ----------------------------------L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l-----~~l~ 759 (779)
|+ .|.+.++. +.. ...+..+++|+.|....+.+ ..+.
T Consensus 200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~-~L~L~~n~-l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT-ILKLQHNN-LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp CSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCC-EEECCSSC-CCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ccCccccccCCchhheeeccCCcccccccccCCCCC-EEECCCCC-CCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 22 23332221 111 23456677777775444433 3455
Q ss_pred CCCCCCeEEEeecCCCCCC
Q 040735 760 PHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 760 ~~~~L~~L~l~~~~~~~~P 778 (779)
.+++|+.|+|++|.++.+|
T Consensus 276 ~l~~L~~L~Ls~N~l~~l~ 294 (597)
T 3oja_B 276 KMQRLERLYISNNRLVALN 294 (597)
T ss_dssp TCSSCCEEECTTSCCCEEE
T ss_pred CccCCCEEECCCCCCCCCC
Confidence 6788999999998876654
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=160.57 Aligned_cols=103 Identities=12% Similarity=0.130 Sum_probs=57.7
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCc
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKH 622 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~ 622 (779)
..++++.+.++.+.... ...+..+++|+.|.+.++. +....|..+.++++|++|+|++|.++.+|.. .+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNYISELW-TSDILSLSKLRILIISHNR------IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVN 91 (520)
T ss_dssp TTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSC------CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred ccccEEECCCCcccccC-hhhccccccccEEecCCCc------cCCcChHHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence 55666666655433211 1245566666766666654 3333344444666666666666666666544 5666
Q ss_pred cceEecccccccc--cccccccccccceeeccCC
Q 040735 623 LRFLNLSRTNIQI--LPESINSLYNLHTILLEDC 654 (779)
Q Consensus 623 L~~L~l~~n~i~~--lp~~~~~L~~L~~L~l~~~ 654 (779)
|++|+|++|.++. +|..++++++|++|++++|
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCc
Confidence 6666666666653 3455555555555555554
No 55
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.51 E-value=2.3e-14 Score=165.39 Aligned_cols=225 Identities=16% Similarity=0.108 Sum_probs=155.0
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCC-ccCc-cccCC
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHIS-KLPN-EIGNL 620 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~-~~~~l 620 (779)
..++.+.+.++.... -...+..+++|+.|.+.++. +....+..+.++++|+.|++++|.+. .+|. .++++
T Consensus 278 ~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 278 SGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANK------FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCC------CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred cCCCEEeccCCccCC--CChhhcccccCCEEECccCC------cCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 456677766654432 12346677888888877764 43444455568888888888888877 5654 47888
Q ss_pred CccceEeccccccccc---ccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcc-cCCCCCCcc
Q 040735 621 KHLRFLNLSRTNIQIL---PESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKG-FGKLTCLLT 696 (779)
Q Consensus 621 ~~L~~L~l~~n~i~~l---p~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~ 696 (779)
++|++|++++|.++.+ |..+..+++|++|++++|......|..+..+++|++|++++|...+..|.. ++.+++|++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 8999999999888865 567888899999999988444444667888899999999988854444444 788888888
Q ss_pred cCceeeCCCCCCCchhhhccccccceeEEcccCCCCC--cchhhhccCCCCCCCchHHHHh-----ccCCCCCCCCeEEE
Q 040735 697 LSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKD--VGDASEAQLNTKPDFKIEIRVL-----DMLKPHQKLEELTI 769 (779)
Q Consensus 697 L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~--~~~~~~~~L~~l~~L~~~~~~l-----~~l~~~~~L~~L~l 769 (779)
|++..+.. .......+..+++|+ .|.+.++..... .....+..+++|+.|....+.+ ..+..+++|+.|+|
T Consensus 430 L~l~~n~l-~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 430 LNLSHSLL-DISSEQLFDGLPALQ-HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp EECTTCCC-BTTCTTTTTTCTTCC-EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EECCCCcc-CCcCHHHHhCCCCCC-EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 87654432 233344566777787 888876543211 1124467788888885554433 34556789999999
Q ss_pred eecCCCCC
Q 040735 770 AGYGGTKF 777 (779)
Q Consensus 770 ~~~~~~~~ 777 (779)
++|.++.+
T Consensus 508 s~N~l~~~ 515 (606)
T 3t6q_A 508 SHNRLTSS 515 (606)
T ss_dssp CSSCCCGG
T ss_pred CCCccCcC
Confidence 99987653
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.50 E-value=1.2e-14 Score=146.32 Aligned_cols=191 Identities=14% Similarity=0.168 Sum_probs=113.3
Q ss_pred cceEecccCcccccccccchHhhh-hhcCCCCccEEEecCCC-CCccCc-cccCCCccceEeccc-cccccccc-ccccc
Q 040735 569 RLRTFLPVNLSDYRRNYLAWSVLQ-RLLNLPRLRVFSLHGYH-ISKLPN-EIGNLKHLRFLNLSR-TNIQILPE-SINSL 643 (779)
Q Consensus 569 ~Lr~l~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~lp~-~~~~l~~L~~L~l~~-n~i~~lp~-~~~~L 643 (779)
+|+.|.+.++. +. .+++ .+.++++|++|++++|. ++.+|. .|.++++|++|++++ |.++.+|. .|.++
T Consensus 32 ~l~~L~l~~n~------l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 32 STQTLKLIETH------LR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp TCCEEEEESCC------CS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred cccEEEEeCCc------ce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence 56666665543 22 2233 33367777777777775 766653 567777777777776 77776653 46677
Q ss_pred cccceeeccCCcchhhchhhhcCccccc---eeecCCC-cccccCCcc-cCCCCCCc-ccCceeeCCCCCCCchhhhccc
Q 040735 644 YNLHTILLEDCRRLKKLCKNMGNLMKLH---HLRNPNV-HSLEEMPKG-FGKLTCLL-TLSRFVVGKDSGSGLRELKSLM 717 (779)
Q Consensus 644 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~---~L~l~~~-~~~~~~p~~-~~~L~~L~-~L~~~~~~~~~~~~~~~L~~L~ 717 (779)
++|++|++++| .+..+|. +..+++|+ +|++++| . +..+|.. ++.+++|+ +|++..+.... -....+.. .
T Consensus 105 ~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~-l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~-~ 179 (239)
T 2xwt_C 105 PLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPY-MTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNG-T 179 (239)
T ss_dssp TTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTT-CCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTT-C
T ss_pred CCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcc-hhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCC-C
Confidence 77777777777 5566665 66666666 7777777 4 5566544 66677777 66543322210 00111122 4
Q ss_pred cccceeEEcccCCCCCcchhhhccC-CCCCCCchHHHHhccCC--CCCCCCeEEEeec
Q 040735 718 HLQGTLQISKLENVKDVGDASEAQL-NTKPDFKIEIRVLDMLK--PHQKLEELTIAGY 772 (779)
Q Consensus 718 ~L~~~L~i~~~~~~~~~~~~~~~~L-~~l~~L~~~~~~l~~l~--~~~~L~~L~l~~~ 772 (779)
+|+ .|.+.+...+..++...+..+ ++|+.|+...+.+..+. .+++|+.|+++++
T Consensus 180 ~L~-~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 180 KLD-AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp EEE-EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred CCC-EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 555 666665433444455555566 66666655555554443 2567888887765
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.50 E-value=2.8e-14 Score=157.87 Aligned_cols=207 Identities=13% Similarity=0.102 Sum_probs=157.0
Q ss_pred CCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCC
Q 040735 542 SQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLK 621 (779)
Q Consensus 542 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~ 621 (779)
...++++.+.++.+.. ++.+..+++|+.|.+.++. +.. ++ +.++++|++|++++|.++.+| +++++
T Consensus 41 l~~L~~L~Ls~n~l~~---~~~l~~l~~L~~L~Ls~n~------l~~-~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~ 106 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD---MTGIEKLTGLTKLICTSNN------ITT-LD--LSQNTNLTYLACDSNKLTNLD--VTPLT 106 (457)
T ss_dssp HTTCCEEECCSSCCCC---CTTGGGCTTCSEEECCSSC------CSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred cCCCCEEEccCCCccc---ChhhcccCCCCEEEccCCc------CCe-Ec--cccCCCCCEEECcCCCCceee--cCCCC
Confidence 3567888887765543 3467888999999988865 333 22 568999999999999999885 88999
Q ss_pred ccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCcee
Q 040735 622 HLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFV 701 (779)
Q Consensus 622 ~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~ 701 (779)
+|++|++++|.++.+| ++.+++|++|++++| .+..+| ++.+++|++|++++|..++.+ .++.+++|++|++..
T Consensus 107 ~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp TCCEEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred cCCEEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 9999999999999886 899999999999999 666675 889999999999999767776 478899999987655
Q ss_pred eCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc--CCCCCCCCeEEEeecCCCCCC
Q 040735 702 VGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM--LKPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 702 ~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~--l~~~~~L~~L~l~~~~~~~~P 778 (779)
+.... +. +..+++|+ .|.+.+.. +... .+..+++|+.|....+.+.+ +..+++|+.|++++|.++.+|
T Consensus 180 n~l~~---l~-l~~l~~L~-~L~l~~N~-l~~~---~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 180 NKITE---LD-VSQNKLLN-RLNCDTNN-ITKL---DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SCCCC---CC-CTTCTTCC-EEECCSSC-CSCC---CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC
T ss_pred Cccce---ec-cccCCCCC-EEECcCCc-CCee---ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcC
Confidence 43322 22 66677777 77776643 2222 25677888888555444443 456789999999999887765
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.50 E-value=1.4e-14 Score=155.13 Aligned_cols=196 Identities=19% Similarity=0.200 Sum_probs=141.1
Q ss_pred ccceEecccCcccccccccchHhhh-hhcCCCCccEEEecCCCCCccC-ccccCCCccceEecccccccccccc-ccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQ-RLLNLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPES-INSLY 644 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~ 644 (779)
++|+.|.+.++. +.. ++. .+.++++|++|++++|.++.++ ..|+++++|++|+|++|.++.+|.. +++++
T Consensus 52 ~~L~~L~l~~n~------i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNR------ITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSC------CCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred ccCcEEECCCCc------Ccc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 578888888765 333 333 4558899999999999998774 6688999999999999999988876 78899
Q ss_pred ccceeeccCCcchhhchh--hhcCccccceeecCCCcccccCC-cccCCCCCCcccCceeeCCCCCCCchhhhccccccc
Q 040735 645 NLHTILLEDCRRLKKLCK--NMGNLMKLHHLRNPNVHSLEEMP-KGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQG 721 (779)
Q Consensus 645 ~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~ 721 (779)
+|++|++++| .+..+|. .+.++++|++|++++|..++.++ ..++++++|++|++..+.. .+.....+.++++|+
T Consensus 125 ~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~- 201 (353)
T 2z80_A 125 SLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVS- 201 (353)
T ss_dssp TCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEE-
T ss_pred cCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc-CccCHHHHhccccCC-
Confidence 9999999998 7778877 58889999999999885455654 5688888999887665443 223345566777777
Q ss_pred eeEEcccCCCCCcchhhhccCCCCCCCchHHHHhccC--------CCCCCCCeEEEeecCC
Q 040735 722 TLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDML--------KPHQKLEELTIAGYGG 774 (779)
Q Consensus 722 ~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~l--------~~~~~L~~L~l~~~~~ 774 (779)
.|.+.+.. +...+...+..+++|+.|....+.+..+ ...+.++.++|+++.+
T Consensus 202 ~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 202 HLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp EEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred eecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 77777643 3455555556677777775444433332 2245677777777654
No 59
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=3.4e-14 Score=148.86 Aligned_cols=170 Identities=19% Similarity=0.246 Sum_probs=137.7
Q ss_pred CCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeec
Q 040735 596 NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRN 675 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 675 (779)
.+++|+.|++++|.++.+| .+..+++|++|+|++|.++.+|. +..+++|++|++++| .+..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEEC
Confidence 5678999999999999987 68999999999999999999988 999999999999999 677776 6999999999999
Q ss_pred CCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHh
Q 040735 676 PNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVL 755 (779)
Q Consensus 676 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l 755 (779)
++|. +..+|. ++.+++|++|++..+.. ..+..+..+++|+ .|.+.++. +..... +..+++|+.|....+.+
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l---~~~~~l~~l~~L~-~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQI---TNISPLAGLTNLQ-YLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSSCC---CCCGGGGGCTTCC-EEECCSSC-CCCCGG--GTTCTTCCEEECCSSCC
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCCcc---CcCccccCCCCcc-EEEccCCc-CCCChh--hcCCCCCCEEECCCCcc
Confidence 9999 667775 89999999997655433 2344477888888 88887753 333333 67888888885554444
Q ss_pred cc---CCCCCCCCeEEEeecCCCCCC
Q 040735 756 DM---LKPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 756 ~~---l~~~~~L~~L~l~~~~~~~~P 778 (779)
.. +..+++|++|+|++|.+..+|
T Consensus 186 ~~~~~l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 186 SDISPLASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp CCCGGGGGCTTCCEEECTTSCCCBCG
T ss_pred CcChhhcCCCCCCEEEccCCccCccc
Confidence 33 445789999999999887664
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.49 E-value=1.2e-13 Score=152.77 Aligned_cols=204 Identities=16% Similarity=0.150 Sum_probs=153.6
Q ss_pred CCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCC
Q 040735 542 SQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLK 621 (779)
Q Consensus 542 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~ 621 (779)
...++++.+.++..... .+..+++|+.|.+.++. +.. + .+.++++|++|++++|.++.+| +++++
T Consensus 63 l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~------l~~-~--~~~~l~~L~~L~L~~N~l~~l~--~~~l~ 127 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNK------LTN-L--DVTPLTKLTYLNCDTNKLTKLD--VSQNP 127 (457)
T ss_dssp CTTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSC------CSC-C--CCTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred cCCCCEEEccCCcCCeE----ccccCCCCCEEECcCCC------Cce-e--ecCCCCcCCEEECCCCcCCeec--CCCCC
Confidence 46788888887765442 37788999999998865 333 2 2568999999999999999886 89999
Q ss_pred ccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCcee
Q 040735 622 HLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFV 701 (779)
Q Consensus 622 ~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~ 701 (779)
+|++|++++|.++.+| ++.+++|++|++++|..++.+ .++.+++|++|++++|. +..+| ++.+++|+.|.+..
T Consensus 128 ~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 128 LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDT 200 (457)
T ss_dssp TCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC--CTTCTTCCEEECCS
T ss_pred cCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec--cccCCCCCEEECcC
Confidence 9999999999999885 889999999999999777777 47899999999999998 66787 88899999987654
Q ss_pred eCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhccCC--CCCCCCeEEEeecCCCC
Q 040735 702 VGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDMLK--PHQKLEELTIAGYGGTK 776 (779)
Q Consensus 702 ~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~l~--~~~~L~~L~l~~~~~~~ 776 (779)
+.... + .+..+++|+ .|++.+... ..++ +..+++|+.|....+.+.++. .+++|+.|+++++.+..
T Consensus 201 N~l~~---~-~l~~l~~L~-~L~Ls~N~l-~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~ 268 (457)
T 3bz5_A 201 NNITK---L-DLNQNIQLT-FLDCSSNKL-TEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLE 268 (457)
T ss_dssp SCCSC---C-CCTTCTTCS-EEECCSSCC-SCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CcCCe---e-ccccCCCCC-EEECcCCcc-cccC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCE
Confidence 43322 2 366777777 788876433 3333 567788888866555555432 35677777666655544
No 61
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=5.3e-14 Score=146.03 Aligned_cols=148 Identities=24% Similarity=0.334 Sum_probs=109.3
Q ss_pred cccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEeccccccccccccccc
Q 040735 563 SVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINS 642 (779)
Q Consensus 563 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~ 642 (779)
....+++|+.|.+.++. +. .+ +.+..+++|+.|++++|.++.++. ++++++|++|++++|.++.+|. +..
T Consensus 41 ~~~~l~~L~~L~l~~~~------i~-~~-~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~ 110 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSD------IK-SV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKD 110 (291)
T ss_dssp CHHHHHTCCEEECTTSC------CC-CC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTT
T ss_pred chhhcCcccEEEccCCC------cc-cC-hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hcc
Confidence 34567788888877654 21 11 345578889999999998888876 8888899999999988888765 888
Q ss_pred ccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccce
Q 040735 643 LYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGT 722 (779)
Q Consensus 643 L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~ 722 (779)
+++|++|++++| .+..+| .+..+++|++|++++|. +..+ ..++.+++|++|++..+... .+..+..+++|+ .
T Consensus 111 l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~---~~~~l~~l~~L~-~ 182 (291)
T 1h6t_A 111 LKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQ-N 182 (291)
T ss_dssp CTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCC---CCGGGTTCTTCC-E
T ss_pred CCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccc---cchhhcCCCccC-E
Confidence 888999999888 666664 57888889999998888 5566 46788888888876544332 233367777777 7
Q ss_pred eEEccc
Q 040735 723 LQISKL 728 (779)
Q Consensus 723 L~i~~~ 728 (779)
|.+.++
T Consensus 183 L~L~~N 188 (291)
T 1h6t_A 183 LYLSKN 188 (291)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 777653
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=4e-14 Score=145.99 Aligned_cols=177 Identities=19% Similarity=0.240 Sum_probs=135.2
Q ss_pred CCccEEEecCCCCCccCc-cccCCCccceEeccccccccccc-ccccccccceeeccCCcchhhch-hhhcCccccceee
Q 040735 598 PRLRVFSLHGYHISKLPN-EIGNLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKLC-KNMGNLMKLHHLR 674 (779)
Q Consensus 598 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~ 674 (779)
+.|++|++++|.++.++. .|.++++|++|++++|.++.+|. .+.++++|++|++++| .+..+| ..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 469999999999998865 79999999999999999998865 7899999999999999 566665 5699999999999
Q ss_pred cCCCcccccCCc-ccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCC----Cc
Q 040735 675 NPNVHSLEEMPK-GFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPD----FK 749 (779)
Q Consensus 675 l~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~----L~ 749 (779)
+++|. +..++. .++++++|++|++..+..........+.++++|+ .|++.++. +.......+..+.+++. |.
T Consensus 107 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~-~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECCSSC-CCEECGGGGHHHHTCTTCCEEEE
T ss_pred CCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC-EEECCCCC-CCcCCHHHhhhhhhccccceeee
Confidence 99999 555554 6899999999987655443223355688888888 88887743 33444455566666663 33
Q ss_pred hHHHHhccC----CCCCCCCeEEEeecCCCCCC
Q 040735 750 IEIRVLDML----KPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 750 ~~~~~l~~l----~~~~~L~~L~l~~~~~~~~P 778 (779)
...+.+..+ ....+|++|+|++|.++.+|
T Consensus 184 ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 184 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP 216 (276)
T ss_dssp CCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC
T ss_pred cCCCcccccCccccCCCcccEEECCCCceeecC
Confidence 333333322 22448999999999988876
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.49 E-value=7.5e-14 Score=161.12 Aligned_cols=226 Identities=19% Similarity=0.139 Sum_probs=128.8
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhh-hcCCCCccEEEecCCCCCcc---Ccccc
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQR-LLNLPRLRVFSLHGYHISKL---PNEIG 618 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l---p~~~~ 618 (779)
..++++.+.++..... ....+..+++|+.|.+.++. +.+.++.. +.++++|++|++++|.++.+ |..++
T Consensus 301 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 301 STLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNT------KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp TTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCS------SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred ccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCC------cccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence 3566666655543321 12345667777777776654 33334444 33677777777777777654 45667
Q ss_pred CCCccceEeccccccccc-ccccccccccceeeccCCcchhhchhh-hcCccccceeecCCCcccccCCcccCCCCCCcc
Q 040735 619 NLKHLRFLNLSRTNIQIL-PESINSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLT 696 (779)
Q Consensus 619 ~l~~L~~L~l~~n~i~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~ 696 (779)
++++|++|++++|.+..+ |..+.++++|++|++++|......|.. +..+++|++|++++|......|..++.+++|++
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 777777777777777644 556677777777777777333333333 667777777777777744444555667777777
Q ss_pred cCceeeCCCCC--CCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHH-----HhccCCCCCCCCeEEE
Q 040735 697 LSRFVVGKDSG--SGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIR-----VLDMLKPHQKLEELTI 769 (779)
Q Consensus 697 L~~~~~~~~~~--~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~-----~l~~l~~~~~L~~L~l 769 (779)
|++..+..... .....+..+++|+ .|++.++. +.......+..+++|+.|....+ .++.+..+++| .|+|
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~-~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLE-ILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCC-EEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred EECCCCCCCccccccchhhccCCCcc-EEECCCCc-cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 65443332110 1123355566666 66665542 23333444556666666633222 23344455666 6666
Q ss_pred eecCCCCCC
Q 040735 770 AGYGGTKFP 778 (779)
Q Consensus 770 ~~~~~~~~P 778 (779)
++|.++.+|
T Consensus 531 ~~N~l~~~~ 539 (606)
T 3t6q_A 531 ASNHISIIL 539 (606)
T ss_dssp CSSCCCCCC
T ss_pred cCCcccccC
Confidence 666665543
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=1.9e-13 Score=152.27 Aligned_cols=141 Identities=21% Similarity=0.338 Sum_probs=75.3
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCc
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKH 622 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~ 622 (779)
..++++.+.++.... ++.+..+++|+.|.+.++. +.. +++ +.++++|++|++++|.++.+|. ++++++
T Consensus 68 ~~L~~L~Ls~n~l~~---~~~~~~l~~L~~L~l~~n~------l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~ 135 (466)
T 1o6v_A 68 NNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQ------IAD-ITP-LANLTNLTGLTLFNNQITDIDP-LKNLTN 135 (466)
T ss_dssp TTCCEEECCSSCCCC---CGGGTTCTTCCEEECCSSC------CCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred cCCCEEECCCCccCC---chhhhccccCCEEECCCCc------ccc-Chh-hcCCCCCCEEECCCCCCCCChH-HcCCCC
Confidence 455666665544332 2235666677777666544 222 122 4466777777777776666654 666667
Q ss_pred cceEeccccccccccc--------------------ccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccc
Q 040735 623 LRFLNLSRTNIQILPE--------------------SINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLE 682 (779)
Q Consensus 623 L~~L~l~~n~i~~lp~--------------------~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 682 (779)
|++|++++|.++.+|. .+.++++|++|++++| .+..++. +..+++|++|++++|. +.
T Consensus 136 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~ 212 (466)
T 1o6v_A 136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV-LAKLTNLESLIATNNQ-IS 212 (466)
T ss_dssp CSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECCSSC-CC
T ss_pred CCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh-hccCCCCCEEEecCCc-cc
Confidence 7777776666665542 1334455555555555 3444332 4555555555555555 33
Q ss_pred cCCcccCCCCCCcccCc
Q 040735 683 EMPKGFGKLTCLLTLSR 699 (779)
Q Consensus 683 ~~p~~~~~L~~L~~L~~ 699 (779)
.++. ++.+++|++|++
T Consensus 213 ~~~~-~~~l~~L~~L~l 228 (466)
T 1o6v_A 213 DITP-LGILTNLDELSL 228 (466)
T ss_dssp CCGG-GGGCTTCCEEEC
T ss_pred cccc-ccccCCCCEEEC
Confidence 3322 444555555543
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.48 E-value=3.4e-14 Score=162.78 Aligned_cols=146 Identities=18% Similarity=0.144 Sum_probs=114.1
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccC-ccccC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLP-NEIGN 619 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~ 619 (779)
++..++++.+.++...... ...+.++++|+.|.+.++. +....+..+.++++|++|+|++|.++.+| ..|++
T Consensus 26 l~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SCSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccccEEEccCCccCccC-hhHhhCCCCceEEECCCCc------CCccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 5667888888776554322 2357789999999998865 33322334558999999999999998775 67899
Q ss_pred CCccceEeccccccccccc-ccccccccceeeccCCcchh--hchhhhcCccccceeecCCCcccccCCcccCCCCCC
Q 040735 620 LKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLK--KLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCL 694 (779)
Q Consensus 620 l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L 694 (779)
+++|++|++++|.++.+|. .++++++|++|++++| .+. .+|..++++++|++|++++|......|..++.+++|
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 9999999999999998876 6899999999999999 554 478899999999999999998443344557777777
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.48 E-value=4.3e-14 Score=165.51 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=112.5
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCc-cccC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPN-EIGN 619 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~ 619 (779)
++..++++.+.++.+.... ...+.++++|+.|.+.++. +....|..+.++++|++|+|++|.++.+|. .|++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNT------ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp SCTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSC------CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCc------cCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 4567888888876554322 2347788999999888764 444444455588999999999999988875 5889
Q ss_pred CCccceEecccccccccc-cccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcc-c--CCCCCCc
Q 040735 620 LKHLRFLNLSRTNIQILP-ESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKG-F--GKLTCLL 695 (779)
Q Consensus 620 l~~L~~L~l~~n~i~~lp-~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-~--~~L~~L~ 695 (779)
+++|++|+|++|.++.+| ..|+++++|++|++++|......|..++++++|++|++++|. +..++.. + ..+++|+
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLK 174 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEES
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcccccccc
Confidence 999999999999988876 568899999999999984444445668888999999998888 4444432 3 2456777
Q ss_pred ccCce
Q 040735 696 TLSRF 700 (779)
Q Consensus 696 ~L~~~ 700 (779)
+|++.
T Consensus 175 ~L~L~ 179 (680)
T 1ziw_A 175 KLELS 179 (680)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 77543
No 67
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.47 E-value=1.4e-13 Score=153.30 Aligned_cols=212 Identities=20% Similarity=0.239 Sum_probs=134.4
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCc
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKH 622 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~ 622 (779)
..++.+.+..+... .++.+..+++|+.|.+.++. +.. +++ +.++++|++|++++|.++.++. ++++++
T Consensus 46 ~~l~~L~l~~~~i~---~l~~~~~l~~L~~L~Ls~n~------l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQ------LTD-ITP-LKNLTKLVDILMNNNQIADITP-LANLTN 113 (466)
T ss_dssp HTCCEEECCSSCCC---CCTTGGGCTTCCEEECCSSC------CCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred ccccEEecCCCCCc---cCcchhhhcCCCEEECCCCc------cCC-chh-hhccccCCEEECCCCccccChh-hcCCCC
Confidence 45777777665433 34567788999999998865 322 233 6699999999999999998877 999999
Q ss_pred cceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceee---------------------cCCCccc
Q 040735 623 LRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLR---------------------NPNVHSL 681 (779)
Q Consensus 623 L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~---------------------l~~~~~~ 681 (779)
|++|++++|.++.+|. +.++++|++|++++| .+..+|. +..+++|++|+ +++|. +
T Consensus 114 L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l 189 (466)
T 1o6v_A 114 LTGLTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-V 189 (466)
T ss_dssp CCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-C
T ss_pred CCEEECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-C
Confidence 9999999999999976 999999999999999 6666653 55555555554 44444 3
Q ss_pred ccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc---C
Q 040735 682 EEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM---L 758 (779)
Q Consensus 682 ~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~---l 758 (779)
..++ .+.++++|++|++..+.. ..+..+..+++|+ .|.+.+.. +... ..+..+++|+.|....+.+.. +
T Consensus 190 ~~~~-~l~~l~~L~~L~l~~n~l---~~~~~~~~l~~L~-~L~l~~n~-l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~ 261 (466)
T 1o6v_A 190 SDIS-VLAKLTNLESLIATNNQI---SDITPLGILTNLD-ELSLNGNQ-LKDI--GTLASLTNLTDLDLANNQISNLAPL 261 (466)
T ss_dssp CCCG-GGGGCTTCSEEECCSSCC---CCCGGGGGCTTCC-EEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCCCGGG
T ss_pred CCCh-hhccCCCCCEEEecCCcc---cccccccccCCCC-EEECCCCC-cccc--hhhhcCCCCCEEECCCCccccchhh
Confidence 3332 244444444444332221 1122244444555 55554432 1111 234455566665333322222 3
Q ss_pred CCCCCCCeEEEeecCCCCCC
Q 040735 759 KPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 759 ~~~~~L~~L~l~~~~~~~~P 778 (779)
..+++|++|++++|.+..+|
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCG
T ss_pred hcCCCCCEEECCCCccCccc
Confidence 45667777777777666544
No 68
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=165.60 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=45.6
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHh-hhhhcCCCCccEEEecCCCCCcc-Ccccc
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSV-LQRLLNLPRLRVFSLHGYHISKL-PNEIG 618 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~l-p~~~~ 618 (779)
.+..++++.+..+.+... ....+.++++|+.|.+.++. ....+ |..+.++++|++|+|++|.++.+ |..|+
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~------~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQY------TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTC------CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCC------CccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 344555555555433221 12334455555555554432 11222 22222444444444444444433 34444
Q ss_pred CCCccceEecccccccc-cccc--cccccccceeeccCC
Q 040735 619 NLKHLRFLNLSRTNIQI-LPES--INSLYNLHTILLEDC 654 (779)
Q Consensus 619 ~l~~L~~L~l~~n~i~~-lp~~--~~~L~~L~~L~l~~~ 654 (779)
++++|++|+|++|.++. +|.. +++|++|++|++++|
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC
Confidence 44444444444444442 2322 444444444444444
No 69
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=4.2e-12 Score=137.50 Aligned_cols=292 Identities=12% Similarity=-0.021 Sum_probs=179.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc----cc--cCceEEEEeCCCC-CHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQ----RH--FQIKSWTCVFEDF-DVF 257 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~~~~~~-~~~ 257 (779)
..++||+.+++.+..++..... ....+.+.|+|++|+|||+||+.+++...-. .. ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 5799999999999988864211 1234689999999999999999998742111 01 2345778777766 788
Q ss_pred HHHHHHHHHhhcCCC-CCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChh----h-hhhhcccCCCCCCCcEEEEEcCc
Q 040735 258 RVSKLILNSIASDQC-TDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYN----S-WRALSCPFGAGAFGSKIVVTHRN 331 (779)
Q Consensus 258 ~~~~~il~~l~~~~~-~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~----~-~~~l~~~l~~~~~gs~IivTtR~ 331 (779)
.++..++..+..... ............+.+.+..++.+|||||++.-... . ...+.... .+..||+||+.
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~ 173 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSS
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECC
Confidence 888888888843321 12334466677778888776669999999542211 1 22222222 57789999987
Q ss_pred hhhH----hhh--cccccccCCCCChHHHHHHHHHhhcC-CCCCCCChhHHHHHHHHHHHcC---CChH-HHHHHHhhh-
Q 040735 332 QGVA----ETM--RAVSTKTLKELSDDDCLRVLIQHSLG-ARDFNIPQSLKEVAEKIVKKCK---GLPL-AAKTLGGLL- 399 (779)
Q Consensus 332 ~~v~----~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~-~~~~~~~~~~~~~~~~I~~~c~---G~PL-ai~~~~~~l- 399 (779)
.... ... .-...+.+++++.++..++|...+.. ......++ +..+.|++.|+ |.|. ++..+-...
T Consensus 174 ~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 5321 111 11238899999999999999987431 11111222 44566777777 9887 333332222
Q ss_pred -c---CCCChhHHHHHHhhhhcccccCCCCchHHHHHhhcCCChhhHhHhhhhccCCCCCccCHHHHHHHHHHcCCccCC
Q 040735 400 -R---GKDDLNDWEFVLNANIWDLQEDKCDIVPALRVSYHFLPPQLKQCFAYFSLFPKDYDFQEEEIILLWTAEGFLDQE 475 (779)
Q Consensus 400 -~---~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp~~~~i~~~~li~~W~aeg~i~~~ 475 (779)
. ..-+.+.+...+.... ...+.-++..|+++.+..+..++....+-.+. .......-..| +
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~--- 315 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q--- 315 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C---
T ss_pred HhcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C---
Confidence 1 1235566666655432 13466778899998888887777611101111 11111111222 1
Q ss_pred CCCCCHHHHHHHHHHHHhhCccccccC
Q 040735 476 YNGRKMEDLGREFVRELHSRSLVQQSS 502 (779)
Q Consensus 476 ~~~~~~e~~~~~~l~~L~~~~ll~~~~ 502 (779)
.........+++..|...|+++...
T Consensus 316 --~~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 316 --KPLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp --CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred --CCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 1123466778999999999998643
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=2e-14 Score=160.45 Aligned_cols=212 Identities=14% Similarity=0.047 Sum_probs=150.3
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCc
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKH 622 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~ 622 (779)
..++.+.+.++.+... ....+..+++|+.|.+.++. +.+..+ +.++++|++|+|++|.++.+|. .++
T Consensus 34 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~------l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~ 100 (487)
T 3oja_A 34 WNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNV------LYETLD--LESLSTLRTLDLNNNYVQELLV----GPS 100 (487)
T ss_dssp GGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSC------CEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTT
T ss_pred CCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCC------CCCCcc--cccCCCCCEEEecCCcCCCCCC----CCC
Confidence 3677888777654432 12456788888888888765 333222 5588888888888888877663 378
Q ss_pred cceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccC-CCCCCcccCcee
Q 040735 623 LRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFG-KLTCLLTLSRFV 701 (779)
Q Consensus 623 L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~-~L~~L~~L~~~~ 701 (779)
|++|++++|.++.+|.. .+++|++|++++|......|..++.+++|++|++++|.+.+..|..+. .+++|++|++..
T Consensus 101 L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 101 IETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 88888888888877653 568899999999944444466789999999999999995555666665 789999987654
Q ss_pred eCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc----CCCCCCCCeEEEeecCCC
Q 040735 702 VGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM----LKPHQKLEELTIAGYGGT 775 (779)
Q Consensus 702 ~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~----l~~~~~L~~L~l~~~~~~ 775 (779)
+.. ..+..+..+++|+ .|+++++. +..++.. +..+++|+.|+...+.+.+ +..+++|+.|++++|++.
T Consensus 179 N~l---~~~~~~~~l~~L~-~L~Ls~N~-l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 179 NFI---YDVKGQVVFAKLK-TLDLSSNK-LAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SCC---CEEECCCCCTTCC-EEECCSSC-CCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred Ccc---ccccccccCCCCC-EEECCCCC-CCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 433 2234444577787 88887753 3334443 6788889888666555443 445689999999999775
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.47 E-value=4.1e-14 Score=161.28 Aligned_cols=177 Identities=19% Similarity=0.197 Sum_probs=133.7
Q ss_pred ccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccC-ccccCCCccceEecccccccccccc-cccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPES-INSLYN 645 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~ 645 (779)
++|+.|.+.++. +....|..+.++++|++|+|++|.++.++ ..|+++++|++|+|++|.++.+|+. ++++++
T Consensus 26 ~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNK------ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSC------CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCc------cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 689999988865 44444556669999999999999999775 6799999999999999999988765 999999
Q ss_pred cceeeccCCcchhh--chhhhcCccccceeecCCCcccccCC-cccCCCCCCcccCceeeCCCCCCCchhhhccccccce
Q 040735 646 LHTILLEDCRRLKK--LCKNMGNLMKLHHLRNPNVHSLEEMP-KGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGT 722 (779)
Q Consensus 646 L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~ 722 (779)
|++|++++| .+.. +|..++++++|++|++++|..++.+| ..++++++|++|++..+.. .+.....+.++++|+ .
T Consensus 100 L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~-~ 176 (549)
T 2z81_A 100 LKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIH-H 176 (549)
T ss_dssp CCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEE-E
T ss_pred CcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc-cccChhhhhccccCc-e
Confidence 999999999 5553 46789999999999999998677777 4689999999998765543 233444566666666 6
Q ss_pred eEEcccCCCCCcchhhhccCCCCCCCchHHHH
Q 040735 723 LQISKLENVKDVGDASEAQLNTKPDFKIEIRV 754 (779)
Q Consensus 723 L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~ 754 (779)
|.+..... ...+...+..+++|+.|....+.
T Consensus 177 L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 177 LTLHLSES-AFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEECSBS-TTHHHHHHHSTTTBSEEEEESCB
T ss_pred EecccCcc-cccchhhHhhcccccEEEccCCc
Confidence 66655432 33344444556677766444333
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=4.8e-14 Score=157.41 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=47.2
Q ss_pred hhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccce
Q 040735 593 RLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHH 672 (779)
Q Consensus 593 ~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 672 (779)
.+.++++|++|+|++|.++.+++ ++.+++|++|+|++|.++.+|.. ++|++|++++| .+..+|.. .+++|++
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N-~l~~~~~~--~l~~L~~ 124 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANN-NISRVSCS--RGQGKKN 124 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSS-CCCCEEEC--CCSSCEE
T ss_pred HHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCC-cCCCCCcc--ccCCCCE
Confidence 33355555555555555544333 55555555555555555544422 45555555555 33333321 3345555
Q ss_pred eecCCCcccccCCcccCCCCCCcccCc
Q 040735 673 LRNPNVHSLEEMPKGFGKLTCLLTLSR 699 (779)
Q Consensus 673 L~l~~~~~~~~~p~~~~~L~~L~~L~~ 699 (779)
|++++|.+.+..|..++++++|++|++
T Consensus 125 L~L~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 125 IYLANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp EECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred EECCCCCCCCCCchhhcCCCCCCEEEC
Confidence 555555532222334455555555543
No 73
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.46 E-value=4.1e-12 Score=137.73 Aligned_cols=293 Identities=15% Similarity=0.063 Sum_probs=180.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc---c-cCceEEEEeCCCCCHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQR---H-FQIKSWTCVFEDFDVFRVS 260 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~~~~~~~~~~~~ 260 (779)
..++||+.+++.+..++...-. ....+.+.|+|++|+||||+|+.+++...... . -...+|+++....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 5799999999999999854311 12456889999999999999999987421110 0 1235778888888888999
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHh--CCCeEEEEEeCCcCCChh--hhhhh---cccCCCC--CCCcEEEEEcCc
Q 040735 261 KLILNSIASDQCTDKDDLNLLQEKLKKQL--SGKKFLVVLDDVWNENYN--SWRAL---SCPFGAG--AFGSKIVVTHRN 331 (779)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~~~--~~~~l---~~~l~~~--~~gs~IivTtR~ 331 (779)
..++.+++............+...+...+ .+++.+||||+++.-... ..+.+ ....... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 99999987654433444666667777776 456899999999542211 11222 2211111 345678888876
Q ss_pred hhh--------HhhhcccccccCCCCChHHHHHHHHHhhc---CCCCCCCChhHHHHHHHHHHHcC---CChHHH-HHHH
Q 040735 332 QGV--------AETMRAVSTKTLKELSDDDCLRVLIQHSL---GARDFNIPQSLKEVAEKIVKKCK---GLPLAA-KTLG 396 (779)
Q Consensus 332 ~~v--------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~---~~~~~~~~~~~~~~~~~I~~~c~---G~PLai-~~~~ 396 (779)
... ...+ ....+.+++++.++...++...+. ... ..++ +..+.+++.++ |.|-.+ ..+.
T Consensus 177 ~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 177 LGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPG--VLDP---DVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp STTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTT--TBCS---SHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred CchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCC--CCCH---HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 532 1111 114789999999999999987742 211 1222 34566777777 999433 3322
Q ss_pred hhhc-----C--CCChhHHHHHHhhhhcccccCCCCchHHHHHhhcCCChhhHhHhhhhc-cCCCCCccCHHHHHHHH--
Q 040735 397 GLLR-----G--KDDLNDWEFVLNANIWDLQEDKCDIVPALRVSYHFLPPQLKQCFAYFS-LFPKDYDFQEEEIILLW-- 466 (779)
Q Consensus 397 ~~l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~ls-~fp~~~~i~~~~li~~W-- 466 (779)
.... + .-+.+.+...+.... ...+.-++..||++.+..+..++ ++.....+....+.+..
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 2211 1 124555555554432 12456678899999888777666 44322244444333322
Q ss_pred --HHcCCccCCCCCCCHHHHHHHHHHHHhhCcccccc
Q 040735 467 --TAEGFLDQEYNGRKMEDLGREFVRELHSRSLVQQS 501 (779)
Q Consensus 467 --~aeg~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~ 501 (779)
-..| + .......+..+++.|...|+++..
T Consensus 321 ~~~~~~-~-----~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTLG-L-----EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHTT-C-----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcC-C-----CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 1222 1 122346778899999999999874
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=1.2e-14 Score=154.50 Aligned_cols=206 Identities=18% Similarity=0.137 Sum_probs=105.7
Q ss_pred ccccccceEecccCcccccccccchH-hhhhhcCCCCccEEEecCCCCC-ccCccccCCCccceEecccc-ccc--cccc
Q 040735 564 VSDVERLRTFLPVNLSDYRRNYLAWS-VLQRLLNLPRLRVFSLHGYHIS-KLPNEIGNLKHLRFLNLSRT-NIQ--ILPE 638 (779)
Q Consensus 564 ~~~~~~Lr~l~~~~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n-~i~--~lp~ 638 (779)
+..+++|+.|.+.++. +... ++..+.++++|+.|+|++|.++ ..|..++++++|++|+|++| .++ .+|.
T Consensus 89 ~~~~~~L~~L~L~~~~------l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~ 162 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSV------IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 162 (336)
T ss_dssp CCCCBCCCEEECTTCE------ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred hccCCCCCEEEccCCC------cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH
Confidence 3345666666665543 3333 3333446666666666666655 34555666666666666666 455 2555
Q ss_pred ccccccccceeeccCCcchhh--chhhhcCcc-ccceeecCCCc-cc--ccCCcccCCCCCCcccCceeeCCCCCCCchh
Q 040735 639 SINSLYNLHTILLEDCRRLKK--LCKNMGNLM-KLHHLRNPNVH-SL--EEMPKGFGKLTCLLTLSRFVVGKDSGSGLRE 712 (779)
Q Consensus 639 ~~~~L~~L~~L~l~~~~~~~~--lp~~~~~l~-~L~~L~l~~~~-~~--~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~ 712 (779)
.+.++++|++|++++|..+.. +|..+..++ +|++|++++|. .+ ..+|..++++++|++|++..+...+...+..
T Consensus 163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 566666666666666622322 455556666 66666666663 01 3344445556666666554443222334445
Q ss_pred hhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhc-cCCCC-CCCCeEEEeecCCCC
Q 040735 713 LKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLD-MLKPH-QKLEELTIAGYGGTK 776 (779)
Q Consensus 713 L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~-~l~~~-~~L~~L~l~~~~~~~ 776 (779)
+.++++|+ .|++.++..+.......+.++++|+.|.......+ .+..+ .+|+.|++++|.++.
T Consensus 243 l~~l~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 243 FFQLNYLQ-HLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp GGGCTTCC-EEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCCCSCC
T ss_pred HhCCCCCC-EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhCcceEEecccCcc
Confidence 55556666 66665544332211123445555555533322111 01111 236666676666554
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.45 E-value=3e-13 Score=138.97 Aligned_cols=103 Identities=30% Similarity=0.523 Sum_probs=49.8
Q ss_pred hcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccc-cccccccceeeccCCcchhhchhh-hcCccccc
Q 040735 594 LLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPES-INSLYNLHTILLEDCRRLKKLCKN-MGNLMKLH 671 (779)
Q Consensus 594 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~ 671 (779)
+..+++|++|++++|.++.++ .++++++|++|+|++|.++.+|+. ++++++|++|++++| .+..+|.. +..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCC
Confidence 334555555555555555442 445555555555555555544332 345555555555555 33333332 44555555
Q ss_pred eeecCCCcccccCCcc-cCCCCCCcccCc
Q 040735 672 HLRNPNVHSLEEMPKG-FGKLTCLLTLSR 699 (779)
Q Consensus 672 ~L~l~~~~~~~~~p~~-~~~L~~L~~L~~ 699 (779)
+|++++|. +..+|.. ++.+++|++|++
T Consensus 137 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 137 YLNLAHNQ-LQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCc-cCccCHHHhccCccCCEEEC
Confidence 55555554 3333332 344555555543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.45 E-value=3.2e-13 Score=138.66 Aligned_cols=177 Identities=24% Similarity=0.294 Sum_probs=138.2
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCccC-cccc
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISKLP-NEIG 618 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp-~~~~ 618 (779)
++..++++.+.++.+.... ...+..+++|+.|.+.++. +. .++..++ ++++|++|++++|.++.+| ..|.
T Consensus 35 ~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~------l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 106 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNK------LQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106 (270)
T ss_dssp CCTTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSC------CS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCc------cC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcc
Confidence 4567889998877554322 2357789999999998765 32 4555655 8999999999999999887 4578
Q ss_pred CCCccceEeccccccccccc-ccccccccceeeccCCcchhhchhh-hcCccccceeecCCCcccccCCcc-cCCCCCCc
Q 040735 619 NLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSLEEMPKG-FGKLTCLL 695 (779)
Q Consensus 619 ~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~~L~ 695 (779)
++++|++|++++|.++.+|. .+..+++|++|++++| .+..+|.. +..+++|++|++++|. +..+|.. +.++++|+
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELK 184 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCC
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcC
Confidence 99999999999999998865 4789999999999999 77788776 7899999999999998 6667654 88899999
Q ss_pred ccCceeeCCCCCCCchhhhccccccceeEEcccC
Q 040735 696 TLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLE 729 (779)
Q Consensus 696 ~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~ 729 (779)
+|++..+.. .......+..+++|+ .|.+.++.
T Consensus 185 ~L~L~~N~l-~~~~~~~~~~l~~L~-~L~l~~N~ 216 (270)
T 2o6q_A 185 TLKLDNNQL-KRVPEGAFDSLEKLK-MLQLQENP 216 (270)
T ss_dssp EEECCSSCC-SCCCTTTTTTCTTCC-EEECCSSC
T ss_pred EEECCCCcC-CcCCHHHhccccCCC-EEEecCCC
Confidence 997655433 222223466777787 78887653
No 77
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=1.2e-13 Score=157.42 Aligned_cols=147 Identities=22% Similarity=0.278 Sum_probs=72.1
Q ss_pred cccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEeccccccccccccccc
Q 040735 563 SVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINS 642 (779)
Q Consensus 563 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~ 642 (779)
.+..+++|+.|.+.++. +.. +++ +.++++|+.|+|++|.++.+| .++.|++|++|+|++|.+..+| .+..
T Consensus 60 ~l~~l~~L~~L~Ls~N~------l~~-~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~ 129 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNK------LTD-IKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVH 129 (605)
T ss_dssp TGGGCTTCCEEECTTSC------CCC-CGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGG
T ss_pred HHccCCCCCEEEeeCCC------CCC-Chh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccC
Confidence 44455555555555443 211 111 345555555555555555544 4555555555555555555543 3555
Q ss_pred ccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccce
Q 040735 643 LYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGT 722 (779)
Q Consensus 643 L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~ 722 (779)
|++|+.|+|++| .+..+ ..+..|++|++|+|++|. +..+++ ++.+++|+.|++..+.. ..+..+..|++|+ .
T Consensus 130 l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~i---~~l~~l~~l~~L~-~ 201 (605)
T 1m9s_A 130 LPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHI---SDLRALAGLKNLD-V 201 (605)
T ss_dssp CTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC---CBCGGGTTCTTCS-E
T ss_pred CCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCCC---CCChHHccCCCCC-E
Confidence 555555555555 44444 335555555555555555 333333 55555555554433222 1123444444454 4
Q ss_pred eEEcc
Q 040735 723 LQISK 727 (779)
Q Consensus 723 L~i~~ 727 (779)
|.+.+
T Consensus 202 L~L~~ 206 (605)
T 1m9s_A 202 LELFS 206 (605)
T ss_dssp EECCS
T ss_pred EEccC
Confidence 44443
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.44 E-value=4.2e-14 Score=148.90 Aligned_cols=211 Identities=15% Similarity=0.076 Sum_probs=139.1
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCc
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKH 622 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~ 622 (779)
..++++.+.++.+... ....+..+++|+.|.+.++. +... + .+.++++|++|++++|.++.+|. +++
T Consensus 34 ~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~------l~~~-~-~~~~l~~L~~L~Ls~n~l~~l~~----~~~ 100 (317)
T 3o53_A 34 WNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNV------LYET-L-DLESLSTLRTLDLNNNYVQELLV----GPS 100 (317)
T ss_dssp GGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSC------CEEE-E-EETTCTTCCEEECCSSEEEEEEE----CTT
T ss_pred CCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCc------CCcc-h-hhhhcCCCCEEECcCCccccccC----CCC
Confidence 3566777666544322 12345677777777777654 2222 1 14577778888888887776552 367
Q ss_pred cceEecccccccccccccccccccceeeccCCcchhhch-hhhcCccccceeecCCCcccccCCccc-CCCCCCcccCce
Q 040735 623 LRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLC-KNMGNLMKLHHLRNPNVHSLEEMPKGF-GKLTCLLTLSRF 700 (779)
Q Consensus 623 L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~L~~L~~L~~~ 700 (779)
|++|++++|.++.+|.. .+++|++|++++| .+..++ ..+..+++|++|++++|......|..+ +.+++|++|++.
T Consensus 101 L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 101 IETLHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CCEEECCSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred cCEEECCCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 78888888887776543 3678999999998 555564 468889999999999998443334445 468888888754
Q ss_pred eeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhc----cCCCCCCCCeEEEeecCCC
Q 040735 701 VVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLD----MLKPHQKLEELTIAGYGGT 775 (779)
Q Consensus 701 ~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~----~l~~~~~L~~L~l~~~~~~ 775 (779)
.+.. ..+.....+++|+ .|++.++. +...+.. +..+++|+.|....+.+. .+..+++|+.|+|++|++.
T Consensus 178 ~N~l---~~~~~~~~l~~L~-~L~Ls~N~-l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 178 YNFI---YDVKGQVVFAKLK-TLDLSSNK-LAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TSCC---CEEECCCCCTTCC-EEECCSSC-CCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CCcC---cccccccccccCC-EEECCCCc-CCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 4332 2233344577777 78887643 3333333 677888888865555443 3455789999999998775
No 79
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=3e-13 Score=131.60 Aligned_cols=148 Identities=12% Similarity=0.186 Sum_probs=88.5
Q ss_pred ccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccc-ccccccccc
Q 040735 566 DVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQI-LPESINSLY 644 (779)
Q Consensus 566 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~-lp~~~~~L~ 644 (779)
.+++|+.|.+.++. +. .++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .|..++.++
T Consensus 42 ~l~~L~~L~l~~n~------i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 42 QMNSLTYITLANIN------VT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHHTCCEEEEESSC------CS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred hcCCccEEeccCCC------cc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 45556666555543 21 222 3446667777777777665543 56667777777777777663 566677777
Q ss_pred ccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeE
Q 040735 645 NLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQ 724 (779)
Q Consensus 645 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~ 724 (779)
+|++|++++|......|..+..+++|++|++++|..++.+| .++.+++|++|++..+... .+..+..+++|+ .|+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~---~~~~l~~l~~L~-~L~ 187 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH---DYRGIEDFPKLN-QLY 187 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC---CCTTGGGCSSCC-EEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc---ChHHhccCCCCC-EEE
Confidence 77777777774434456666777777777777775455555 4666666666654433322 233455556666 666
Q ss_pred Ecc
Q 040735 725 ISK 727 (779)
Q Consensus 725 i~~ 727 (779)
+.+
T Consensus 188 l~~ 190 (197)
T 4ezg_A 188 AFS 190 (197)
T ss_dssp ECB
T ss_pred eeC
Confidence 654
No 80
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.43 E-value=9.1e-12 Score=135.11 Aligned_cols=298 Identities=12% Similarity=0.049 Sum_probs=184.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccc-CceEEEEeCCCCCHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHF-QIKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i 263 (779)
..++||+.+++.+..++........+..+.+.|+|++|+||||||+.+++.. .... ...+|+.+....+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH--hhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 5799999999999999865311011223489999999999999999998732 2221 245677777777888899999
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhC--CCeEEEEEeCCcCCChhhhhhhcccCCCCC----CCcEEEEEcCchhhHhh
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLKKQLS--GKKFLVVLDDVWNENYNSWRALSCPFGAGA----FGSKIVVTHRNQGVAET 337 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~IivTtR~~~v~~~ 337 (779)
+..++............+.+.+...+. +++.+||||+++.-+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 988866433233345566666666553 678999999997654455555544443211 36678888876643322
Q ss_pred hc-------ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHc---------CCChHHHHHHHhhhc-
Q 040735 338 MR-------AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKC---------KGLPLAAKTLGGLLR- 400 (779)
Q Consensus 338 ~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c---------~G~PLai~~~~~~l~- 400 (779)
+. ....+.+.+++.++..+++...+..... ...-..+..+.|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 21 1136899999999999999876532100 0011235677888888 788765544433221
Q ss_pred -----CC--CChhHHHHHHhhhhcccccCCCCchHHHHHhhcCCChhhHhHhhhhccCC---CCCccCHHHHHHHHHH--
Q 040735 401 -----GK--DDLNDWEFVLNANIWDLQEDKCDIVPALRVSYHFLPPQLKQCFAYFSLFP---KDYDFQEEEIILLWTA-- 468 (779)
Q Consensus 401 -----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp---~~~~i~~~~li~~W~a-- 468 (779)
+. -+.+.......... ...+.-.+..||++.+.++..++.+. .+-.+....+...+..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 11 22233333322211 11123346678899888888777654 2224555666554433
Q ss_pred --cCCccCCCCCCCHHHHHHHHHHHHhhCccccccC
Q 040735 469 --EGFLDQEYNGRKMEDLGREFVRELHSRSLVQQSS 502 (779)
Q Consensus 469 --eg~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~ 502 (779)
.|.. .-.......++.+|...++|....
T Consensus 323 ~~~~~~------~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 323 EEYGER------PRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHTTCC------CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHcCCC------CCCHHHHHHHHHHHHhCCCeEEee
Confidence 2211 112356778999999999998754
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=158.25 Aligned_cols=217 Identities=14% Similarity=0.150 Sum_probs=137.6
Q ss_pred ceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCcc---CccccCC
Q 040735 544 SLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKL---PNEIGNL 620 (779)
Q Consensus 544 ~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l---p~~~~~l 620 (779)
.++++.+..+... .++. ..+++|+.|.+.++. .....+ ...+++|+.|++++|.++.+ |..+.++
T Consensus 305 ~L~~L~l~~n~~~---~l~~-~~l~~L~~L~l~~n~------~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 372 (570)
T 2z63_A 305 GWQHLELVNCKFG---QFPT-LKLKSLKRLTFTSNK------GGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372 (570)
T ss_dssp CCSEEEEESCBCS---SCCB-CBCSSCCEEEEESCB------SCCBCC--CCBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred CccEEeeccCccc---ccCc-ccccccCEEeCcCCc------cccccc--cccCCCCCEEeCcCCccCcccccccccccc
Confidence 4555665554332 1222 356666766666543 111111 14677788888888877754 5667778
Q ss_pred CccceEecccccccccccccccccccceeeccCCcchhhc-h-hhhcCccccceeecCCCcccccCCcccCCCCCCcccC
Q 040735 621 KHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKL-C-KNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLS 698 (779)
Q Consensus 621 ~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~l-p-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~ 698 (779)
++|++|++++|.+..+|..+..+++|++|++++| .+..+ | ..+..+++|++|++++|...+..|..++.+++|++|+
T Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451 (570)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CccCEEECCCCccccccccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence 8888888888888877777888888888888887 44444 3 2577788888888888875555666677788888776
Q ss_pred ceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhc-----cCCCCCCCCeEEEeecC
Q 040735 699 RFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLD-----MLKPHQKLEELTIAGYG 773 (779)
Q Consensus 699 ~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~-----~l~~~~~L~~L~l~~~~ 773 (779)
+..+....+.....+..+++|+ .|++.++. +.......+..+++|+.|....+.+. .+..+++|+.|+|++|+
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~-~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLT-FLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCC-EEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCcCccccchhhhhcccCCC-EEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 5443321112234456666676 77776643 33333445566777777754443333 34557899999999987
Q ss_pred CC
Q 040735 774 GT 775 (779)
Q Consensus 774 ~~ 775 (779)
+.
T Consensus 530 ~~ 531 (570)
T 2z63_A 530 WD 531 (570)
T ss_dssp BC
T ss_pred cc
Confidence 65
No 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.42 E-value=4.4e-13 Score=160.46 Aligned_cols=132 Identities=11% Similarity=0.048 Sum_probs=74.1
Q ss_pred cccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhcccccccee
Q 040735 644 YNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTL 723 (779)
Q Consensus 644 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L 723 (779)
.+|++|++++|......|..+..+++|++|++++|...+..|..++.+++|++|++..+.. .......+..+++|+ .|
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~-~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVA-YI 343 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC-SCCCSCSCSSCTTCC-EE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC-CccCHHHhcCCCCCC-EE
Confidence 4566666666632222344466666777777776663333344566666666665543322 122233445555555 56
Q ss_pred EEcccCCCCCcchhhhccCCCCCCCchHHHHhccCCCCCCCCeEEEeecCCCCCC
Q 040735 724 QISKLENVKDVGDASEAQLNTKPDFKIEIRVLDMLKPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 724 ~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~l~~~~~L~~L~l~~~~~~~~P 778 (779)
.+.++ .+..++...+..+++|+.|....+.+..+..+++|+.|++++|.++.+|
T Consensus 344 ~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~ 397 (844)
T 3j0a_A 344 DLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397 (844)
T ss_dssp ECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCC
T ss_pred ECCCC-CCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccc
Confidence 66553 2333444455666666666665555666655667777777777666655
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.42 E-value=2.2e-13 Score=137.03 Aligned_cols=194 Identities=12% Similarity=0.137 Sum_probs=142.0
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhh-hcCCCCccEEEecC-CCCCccC-ccc
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQR-LLNLPRLRVFSLHG-YHISKLP-NEI 617 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~-n~l~~lp-~~~ 617 (779)
++..++.+.+.++...... ...+.++++|+.|.+.++.. + ..+++. +.++++|++|++++ |.++.+| ..|
T Consensus 29 ~~~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~-----l-~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVT-----L-QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CCTTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSS-----C-CEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CCCcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCC-----c-ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 5567889998887654332 23477899999999987631 1 234443 44899999999998 9999887 578
Q ss_pred cCCCccceEecccccccccccccccccccc---eeeccCCcchhhchhh-hcCccccc-eeecCCCcccccCCcccCCCC
Q 040735 618 GNLKHLRFLNLSRTNIQILPESINSLYNLH---TILLEDCRRLKKLCKN-MGNLMKLH-HLRNPNVHSLEEMPKGFGKLT 692 (779)
Q Consensus 618 ~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~---~L~l~~~~~~~~lp~~-~~~l~~L~-~L~l~~~~~~~~~p~~~~~L~ 692 (779)
.++++|++|++++|.++.+|. +..+.+|+ +|++++|..+..+|.. +.++++|+ +|++++|. +..+|......+
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~ 179 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGT 179 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTC
T ss_pred CCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCC
Confidence 999999999999999999997 88888888 9999998667777765 88999999 99999998 668888765558
Q ss_pred CCcccCceeeCCCCCCCchhhhcc-ccccceeEEcccCCCCCcchhhhccCCCCCCC
Q 040735 693 CLLTLSRFVVGKDSGSGLRELKSL-MHLQGTLQISKLENVKDVGDASEAQLNTKPDF 748 (779)
Q Consensus 693 ~L~~L~~~~~~~~~~~~~~~L~~L-~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L 748 (779)
+|+.|++..+..........+..+ .+|+ .|++.+. .+..++.. .+.+|+.|
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~-~L~l~~N-~l~~l~~~---~~~~L~~L 231 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPS-LLDVSQT-SVTALPSK---GLEHLKEL 231 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCS-EEECTTC-CCCCCCCT---TCTTCSEE
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCc-EEECCCC-ccccCChh---HhccCcee
Confidence 888887654421122222345666 7777 7888763 33344433 34455544
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=5.2e-13 Score=140.04 Aligned_cols=198 Identities=15% Similarity=0.091 Sum_probs=115.9
Q ss_pred ceeEEEEEecccccccccccc--cccccceEecccCcccccccccchHhh----hhhcCCCCccEEEecCCCCCccC-cc
Q 040735 544 SLRHFSYIHGEYDGKKRLKSV--SDVERLRTFLPVNLSDYRRNYLAWSVL----QRLLNLPRLRVFSLHGYHISKLP-NE 616 (779)
Q Consensus 544 ~~r~l~~~~~~~~~~~~~~~~--~~~~~Lr~l~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~lp-~~ 616 (779)
.++++.+.++...... ...+ ..+++|+.|.+.++. +....+ ..+..+++|++|+|++|.+..+| ..
T Consensus 92 ~L~~L~l~~n~l~~~~-~~~~~~~~~~~L~~L~Ls~n~------i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 164 (310)
T 4glp_A 92 RLKELTLEDLKITGTM-PPLPLEATGLALSSLRLRNVS------WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ 164 (310)
T ss_dssp CCCEEEEESCCCBSCC-CCCSSSCCCBCCSSCEEESCC------CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS
T ss_pred ceeEEEeeCCEeccch-hhhhhhccCCCCCEEEeeccc------ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH
Confidence 3666666665443221 1222 567777777776654 222111 22346777888888888877654 56
Q ss_pred ccCCCccceEecccccccc---cccc--cccccccceeeccCCcchhhchhh----hcCccccceeecCCCcccccCCcc
Q 040735 617 IGNLKHLRFLNLSRTNIQI---LPES--INSLYNLHTILLEDCRRLKKLCKN----MGNLMKLHHLRNPNVHSLEEMPKG 687 (779)
Q Consensus 617 ~~~l~~L~~L~l~~n~i~~---lp~~--~~~L~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~L~l~~~~~~~~~p~~ 687 (779)
|+++++|++|+|++|++.. +|.. ++.+++|++|++++| .+..+|.. +..+++|++|++++|.+.+..|..
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 7778888888888887653 4332 357777888888877 55555442 456778888888888744434666
Q ss_pred cCCC---CCCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhccCCCCCCC
Q 040735 688 FGKL---TCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDMLKPHQKL 764 (779)
Q Consensus 688 ~~~L---~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~l~~~~~L 764 (779)
++.+ ++|++|++..+... .....+. ++|+ .|+++++... . +..+..+++|
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~-~L~Ls~N~l~-~---------------------~~~~~~l~~L 296 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLR-VLDLSSNRLN-R---------------------APQPDELPEV 296 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCS-CEECCSCCCC-S---------------------CCCTTSCCCC
T ss_pred HHhccCcCcCCEEECCCCCCC--chhhhhc--CCCC-EEECCCCcCC-C---------------------CchhhhCCCc
Confidence 6665 46666654433221 1111221 4455 5555442111 1 0112346889
Q ss_pred CeEEEeecCCCC
Q 040735 765 EELTIAGYGGTK 776 (779)
Q Consensus 765 ~~L~l~~~~~~~ 776 (779)
+.|+|++|+++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999998753
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.41 E-value=4.9e-13 Score=130.15 Aligned_cols=146 Identities=16% Similarity=0.203 Sum_probs=121.9
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCc-cCccccCCC
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISK-LPNEIGNLK 621 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~ 621 (779)
..++++.+.++.+. .++.+..+++|+.|.+.++. ...++.+.++++|++|++++|.++. .|..+++++
T Consensus 44 ~~L~~L~l~~n~i~---~l~~l~~l~~L~~L~l~~n~--------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 44 NSLTYITLANINVT---DLTGIEYAHNIKDLTINNIH--------ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HTCCEEEEESSCCS---CCTTGGGCTTCSEEEEESCC--------CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred CCccEEeccCCCcc---ChHHHhcCCCCCEEEccCCC--------CCcchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 45778888776543 34467888999999998864 2234466799999999999999985 688899999
Q ss_pred ccceEecccccccc-cccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCce
Q 040735 622 HLRFLNLSRTNIQI-LPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRF 700 (779)
Q Consensus 622 ~L~~L~l~~n~i~~-lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~ 700 (779)
+|++|++++|.++. .|..++.+++|++|++++|..+..+| .+..+++|++|++++|. +..+| .+..+++|++|++.
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEEC
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEee
Confidence 99999999999994 68889999999999999995588888 69999999999999999 66777 68899999998764
Q ss_pred ee
Q 040735 701 VV 702 (779)
Q Consensus 701 ~~ 702 (779)
.+
T Consensus 190 ~N 191 (197)
T 4ezg_A 190 SQ 191 (197)
T ss_dssp BC
T ss_pred Cc
Confidence 43
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.41 E-value=6.9e-13 Score=151.26 Aligned_cols=101 Identities=19% Similarity=0.149 Sum_probs=75.1
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNL 620 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l 620 (779)
++..++.+.+.++.+.. ++. .+++|+.|.+.++. +. .+|. .+++|++|+|++|.++.+|. .+
T Consensus 59 l~~~L~~L~L~~N~l~~---lp~--~l~~L~~L~Ls~N~------l~-~lp~---~l~~L~~L~Ls~N~l~~l~~---~l 120 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTS---LPA--LPPELRTLEVSGNQ------LT-SLPV---LPPGLLELSIFSNPLTHLPA---LP 120 (622)
T ss_dssp CCTTCSEEEECSCCCSC---CCC--CCTTCCEEEECSCC------CS-CCCC---CCTTCCEEEECSCCCCCCCC---CC
T ss_pred hCCCCcEEEecCCCCCC---CCC--cCCCCCEEEcCCCc------CC-cCCC---CCCCCCEEECcCCcCCCCCC---CC
Confidence 44678888888775542 333 56889999888765 22 2333 67889999999999998887 56
Q ss_pred CccceEecccccccccccccccccccceeeccCCcchhhchhh
Q 040735 621 KHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKN 663 (779)
Q Consensus 621 ~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~ 663 (779)
.+|++|++++|+++.+|.. +++|++|++++| .+..+|..
T Consensus 121 ~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~ 159 (622)
T 3g06_A 121 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL 159 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCC
T ss_pred CCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCc
Confidence 7889999999998888875 478888888888 66666653
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.41 E-value=8.4e-13 Score=154.51 Aligned_cols=185 Identities=18% Similarity=0.148 Sum_probs=106.5
Q ss_pred hhhhcCCCCccEEEecCCCCC-ccC-ccccCCCccceEeccccccccc-ccccccccccceeeccCCcc--hhhchhhhc
Q 040735 591 LQRLLNLPRLRVFSLHGYHIS-KLP-NEIGNLKHLRFLNLSRTNIQIL-PESINSLYNLHTILLEDCRR--LKKLCKNMG 665 (779)
Q Consensus 591 ~~~~~~l~~L~~L~l~~n~l~-~lp-~~~~~l~~L~~L~l~~n~i~~l-p~~~~~L~~L~~L~l~~~~~--~~~lp~~~~ 665 (779)
+..+.++++|++|++++|.+. .+| ..+.++++|++|++++|.+..+ |..+..+++|+.|++++|.. +..+|..+.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 334446777777777777775 344 5667777777777777776654 34566666666666666632 134566677
Q ss_pred CccccceeecCCCcccccCCcc-cCCCCCCcccCceeeCCCC-------CCCchhhhccccccceeEEcccCCCCCcchh
Q 040735 666 NLMKLHHLRNPNVHSLEEMPKG-FGKLTCLLTLSRFVVGKDS-------GSGLRELKSLMHLQGTLQISKLENVKDVGDA 737 (779)
Q Consensus 666 ~l~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~-------~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~ 737 (779)
.+++|++|++++|. +..+|.. ++.+++|++|++..+.... +.....+.++++|+ .|++.++ .+..++..
T Consensus 478 ~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~N-~l~~i~~~ 554 (680)
T 1ziw_A 478 PLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH-ILNLESN-GFDEIPVE 554 (680)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC-EEECCSS-CCCCCCTT
T ss_pred cCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC-EEECCCC-CCCCCCHH
Confidence 77777777777776 4445443 6667777766544332211 00112245555665 6666553 23344444
Q ss_pred hhccCCCCCCCchHHHHhccC-----CCCCCCCeEEEeecCCCCCC
Q 040735 738 SEAQLNTKPDFKIEIRVLDML-----KPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 738 ~~~~L~~l~~L~~~~~~l~~l-----~~~~~L~~L~l~~~~~~~~P 778 (779)
.+..+++|+.|....+.+..+ ..+++|+.|+|++|.++.+|
T Consensus 555 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred HcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 556666666664444433332 23466777777766665544
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.41 E-value=7e-13 Score=134.47 Aligned_cols=147 Identities=24% Similarity=0.255 Sum_probs=108.1
Q ss_pred cceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccC-ccccCCCccceEeccccccccccc-cccccccc
Q 040735 569 RLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPE-SINSLYNL 646 (779)
Q Consensus 569 ~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~-~~~~L~~L 646 (779)
..+.+.+.+.. + ..+|..+. +.|+.|+|++|.++.++ ..|+++++|++|+|++|.++.+|+ .+.++++|
T Consensus 15 ~~~~l~~~~~~------l-~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 85 (251)
T 3m19_A 15 GKKEVDCQGKS------L-DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85 (251)
T ss_dssp GGTEEECTTCC------C-SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCeEEecCCCC------c-cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC
Confidence 45555555443 1 23444333 57899999999999775 568999999999999999997755 47899999
Q ss_pred ceeeccCCcchhhchh-hhcCccccceeecCCCcccccCCcc-cCCCCCCcccCceeeCCCCCCCchhhhccccccceeE
Q 040735 647 HTILLEDCRRLKKLCK-NMGNLMKLHHLRNPNVHSLEEMPKG-FGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQ 724 (779)
Q Consensus 647 ~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~ 724 (779)
++|++++| .+..+|. .+..+++|++|++++|. +..+|.. ++.+++|++|++..+... ......+..+++|+ .|+
T Consensus 86 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~-~L~ 161 (251)
T 3m19_A 86 GTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQ-TLS 161 (251)
T ss_dssp CEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEE
T ss_pred CEEECCCC-cccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCC-EEE
Confidence 99999999 6667765 47899999999999998 6677765 688899998876554332 22223466777777 787
Q ss_pred Eccc
Q 040735 725 ISKL 728 (779)
Q Consensus 725 i~~~ 728 (779)
+.++
T Consensus 162 L~~N 165 (251)
T 3m19_A 162 LSTN 165 (251)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7664
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.40 E-value=7.4e-13 Score=134.30 Aligned_cols=128 Identities=20% Similarity=0.289 Sum_probs=61.1
Q ss_pred ccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccC-ccccCCCccceEecccccccccccc-cc
Q 040735 564 VSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPES-IN 641 (779)
Q Consensus 564 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~~-~~ 641 (779)
+..+++|+.|.+.++. +....+..+.++++|++|+|++|.++.+| ..|.++++|++|+|++|.++.+|.. +.
T Consensus 55 ~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 128 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQ------LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128 (251)
T ss_dssp TTTCTTCCEEECTTSC------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred hcCcccCCEEECCCCc------CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhc
Confidence 4445555555554433 22222222235555555555555555443 3345555555555555555555443 34
Q ss_pred cccccceeeccCCcchhhchh-hhcCccccceeecCCCcccccCCc-ccCCCCCCcccCc
Q 040735 642 SLYNLHTILLEDCRRLKKLCK-NMGNLMKLHHLRNPNVHSLEEMPK-GFGKLTCLLTLSR 699 (779)
Q Consensus 642 ~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L~~ 699 (779)
++++|++|++++| .+..+|. .+..+++|++|++++|. +..+|. .+..+++|++|++
T Consensus 129 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 129 RLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred cCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEe
Confidence 5555555555555 4444443 34555555555555555 333332 3444555555443
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.39 E-value=8.9e-14 Score=147.80 Aligned_cols=179 Identities=20% Similarity=0.178 Sum_probs=141.9
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCC-CCC--ccCccccC
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGY-HIS--KLPNEIGN 619 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~--~lp~~~~~ 619 (779)
..++++.+.++..........+..+++|+.|.+.++. +....+..+.++++|++|++++| .++ .+|..+.+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR------LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB------CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc------cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 5677777766543222122346788999999998865 66777888889999999999999 687 36777889
Q ss_pred CCccceEecccc-cccc--ccccccccc-ccceeeccCCc-ch--hhchhhhcCccccceeecCCCc-ccccCCcccCCC
Q 040735 620 LKHLRFLNLSRT-NIQI--LPESINSLY-NLHTILLEDCR-RL--KKLCKNMGNLMKLHHLRNPNVH-SLEEMPKGFGKL 691 (779)
Q Consensus 620 l~~L~~L~l~~n-~i~~--lp~~~~~L~-~L~~L~l~~~~-~~--~~lp~~~~~l~~L~~L~l~~~~-~~~~~p~~~~~L 691 (779)
+++|++|++++| .++. +|..+..++ +|++|++++|. .+ ..+|..+.++++|++|++++|. .....+..++++
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence 999999999999 8884 788899999 99999999993 22 6678888899999999999998 345677789999
Q ss_pred CCCcccCceeeCCCCCCCchhhhccccccceeEEccc
Q 040735 692 TCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKL 728 (779)
Q Consensus 692 ~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~ 728 (779)
++|++|++..+.......+..+.++++|+ .|++.++
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~ 282 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLELGEIPTLK-TLQVFGI 282 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGGGCTTCC-EEECTTS
T ss_pred CCCCEeeCCCCCCCCHHHHHHHhcCCCCC-EEeccCc
Confidence 99999987666543444555688888998 8998875
No 91
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.39 E-value=6.4e-13 Score=150.23 Aligned_cols=151 Identities=16% Similarity=0.179 Sum_probs=74.6
Q ss_pred cCCCccceEecccccccc-cccccccccccceeeccCCcchh---hchhhhcCccccceeecCCCcccccCCcc-cCCCC
Q 040735 618 GNLKHLRFLNLSRTNIQI-LPESINSLYNLHTILLEDCRRLK---KLCKNMGNLMKLHHLRNPNVHSLEEMPKG-FGKLT 692 (779)
Q Consensus 618 ~~l~~L~~L~l~~n~i~~-lp~~~~~L~~L~~L~l~~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~ 692 (779)
..+++|++|++++|.++. +|..++++++|++|++++| .+. .+|..+..+++|++|++++|...+.+|.. +..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 344555556666665553 4555566666666666665 333 34445566666666666666533225543 45555
Q ss_pred CCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc-----CCCCCCCCeE
Q 040735 693 CLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM-----LKPHQKLEEL 767 (779)
Q Consensus 693 ~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~-----l~~~~~L~~L 767 (779)
+|++|++..+.. .+..+..+. ++|+ .|++.++ .+..++.... .+++|+.|....+.+.. +..+++|++|
T Consensus 400 ~L~~L~Ls~N~l-~~~~~~~l~--~~L~-~L~Ls~N-~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 400 SLLSLNMSSNIL-TDTIFRCLP--PRIK-VLDLHSN-KIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp TCCEEECCSSCC-CGGGGGSCC--TTCC-EEECCSS-CCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCEEECcCCCC-Ccchhhhhc--ccCC-EEECCCC-cccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence 555554433221 111122221 3444 5555543 2223333333 56666666443333322 3335567777
Q ss_pred EEeecCCC
Q 040735 768 TIAGYGGT 775 (779)
Q Consensus 768 ~l~~~~~~ 775 (779)
+|++|++.
T Consensus 474 ~l~~N~~~ 481 (520)
T 2z7x_B 474 WLHTNPWD 481 (520)
T ss_dssp ECCSSCBC
T ss_pred ECcCCCCc
Confidence 77766543
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=1e-12 Score=136.21 Aligned_cols=164 Identities=20% Similarity=0.261 Sum_probs=119.4
Q ss_pred ceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCcc
Q 040735 544 SLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHL 623 (779)
Q Consensus 544 ~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L 623 (779)
.++.+.+..+... .++.+..+++|+.|.+.++. +.. +++ +.++++|++|++++|.++.+|. ++++++|
T Consensus 47 ~L~~L~l~~~~i~---~~~~~~~l~~L~~L~L~~n~------l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 114 (291)
T 1h6t_A 47 SIDQIIANNSDIK---SVQGIQYLPNVTKLFLNGNK------LTD-IKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKL 114 (291)
T ss_dssp TCCEEECTTSCCC---CCTTGGGCTTCCEEECCSSC------CCC-CGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTC
T ss_pred cccEEEccCCCcc---cChhHhcCCCCCEEEccCCc------cCC-Ccc-cccCCCCCEEECCCCcCCCChh-hccCCCC
Confidence 4566666554332 23456778888888888765 322 222 6688889999999998888754 8888899
Q ss_pred ceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeC
Q 040735 624 RFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVG 703 (779)
Q Consensus 624 ~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~ 703 (779)
++|++++|.++.+| .+..+++|++|++++| .+..+ ..+..+++|++|++++|. +..++. ++.+++|+.|++..+.
T Consensus 115 ~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 115 KSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCc
Confidence 99999999888874 5888888999999988 66666 468888899999998888 666665 8888888888765443
Q ss_pred CCCCCCchhhhccccccceeEEccc
Q 040735 704 KDSGSGLRELKSLMHLQGTLQISKL 728 (779)
Q Consensus 704 ~~~~~~~~~L~~L~~L~~~L~i~~~ 728 (779)
. ..+..+..+++|+ .|.+.++
T Consensus 190 i---~~l~~l~~l~~L~-~L~l~~n 210 (291)
T 1h6t_A 190 I---SDLRALAGLKNLD-VLELFSQ 210 (291)
T ss_dssp C---CBCGGGTTCTTCS-EEEEEEE
T ss_pred C---CCChhhccCCCCC-EEECcCC
Confidence 3 2344567777777 7777654
No 93
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=3.2e-13 Score=125.00 Aligned_cols=124 Identities=18% Similarity=0.169 Sum_probs=88.3
Q ss_pred cccceEecccCcccccccccc-hHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccc-ccccccccc
Q 040735 567 VERLRTFLPVNLSDYRRNYLA-WSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQI-LPESINSLY 644 (779)
Q Consensus 567 ~~~Lr~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~-lp~~~~~L~ 644 (779)
.++|+.|.+.++. +. +.+|..+..+++|++|++++|.++.+ ..++++++|++|++++|.++. +|..++.++
T Consensus 16 ~~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 3566777666654 33 34454445778888888888888777 667778888888888888876 677677788
Q ss_pred ccceeeccCCcchhhch--hhhcCccccceeecCCCcccccCCc----ccCCCCCCcccCc
Q 040735 645 NLHTILLEDCRRLKKLC--KNMGNLMKLHHLRNPNVHSLEEMPK----GFGKLTCLLTLSR 699 (779)
Q Consensus 645 ~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~----~~~~L~~L~~L~~ 699 (779)
+|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .++.+++|+.|++
T Consensus 89 ~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 8888888887 566554 667788888888888887 555654 4677777777764
No 94
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=5.6e-13 Score=126.10 Aligned_cols=126 Identities=21% Similarity=0.188 Sum_probs=77.7
Q ss_pred ccceEecccCcccccccccc-hHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccc-cccccccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLA-WSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQI-LPESINSLYN 645 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~-lp~~~~~L~~ 645 (779)
++|+.|.+.++. +. +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+.++++
T Consensus 24 ~~L~~L~l~~n~------l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCK------SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCB------CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred ccCCEEECCCCC------CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 455666555543 22 23343334666677777777766666 566667777777777777665 5555556777
Q ss_pred cceeeccCCcchhhch--hhhcCccccceeecCCCcccccCCc----ccCCCCCCcccCceee
Q 040735 646 LHTILLEDCRRLKKLC--KNMGNLMKLHHLRNPNVHSLEEMPK----GFGKLTCLLTLSRFVV 702 (779)
Q Consensus 646 L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~----~~~~L~~L~~L~~~~~ 702 (779)
|++|++++| .+..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++..+
T Consensus 97 L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 97 LTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 777777776 555554 456667777777777776 445554 4666666666665544
No 95
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=1.1e-11 Score=134.09 Aligned_cols=295 Identities=15% Similarity=0.101 Sum_probs=174.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccc---CceEEEEeCCCCCHHHHH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHF---QIKSWTCVFEDFDVFRVS 260 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~~~~~~~~ 260 (779)
+..|+||+.+++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 35799999999999998864211 123468899999999999999999873 32222 245677776666777788
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHhC--CCeEEEEEeCCcCCC----hhhhhhhcccCCC-CCCCcEEEEEcCchh
Q 040735 261 KLILNSIASDQCTDKDDLNLLQEKLKKQLS--GKKFLVVLDDVWNEN----YNSWRALSCPFGA-GAFGSKIVVTHRNQG 333 (779)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~----~~~~~~l~~~l~~-~~~gs~IivTtR~~~ 333 (779)
..++..++........+.......+.+.+. +++.+||||+++.-. ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 888777755433223345555666666653 458999999995421 1223333222211 223566788887654
Q ss_pred hHhhhc-----c--cccccCCCCChHHHHHHHHHhhcCC-CCCCCChhHHHHHHHHHHHcC---CChHHHHHHHhhhc--
Q 040735 334 VAETMR-----A--VSTKTLKELSDDDCLRVLIQHSLGA-RDFNIPQSLKEVAEKIVKKCK---GLPLAAKTLGGLLR-- 400 (779)
Q Consensus 334 v~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~I~~~c~---G~PLai~~~~~~l~-- 400 (779)
....+. . ...+.+++++.++..+++...+... ...... .+..+.+++.++ |.|..+..+.....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 322211 1 1478999999999999998754211 111122 245566777776 99985443332211
Q ss_pred ----C--CCChhHHHHHHhhhhcccccCCCCchHHHHHhhcCCChhhHhHhhhhccCCC-C-CccCHHHHHHHH--HH--
Q 040735 401 ----G--KDDLNDWEFVLNANIWDLQEDKCDIVPALRVSYHFLPPQLKQCFAYFSLFPK-D-YDFQEEEIILLW--TA-- 468 (779)
Q Consensus 401 ----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~ls~fp~-~-~~i~~~~li~~W--~a-- 468 (779)
+ .-+.+.+...+.... ...+.-.+..+|++.+..+..++.+.+ + ..+....+.... ++
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 124455555444322 134566778899888887777764322 2 123333332211 11
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHhhCcccccc
Q 040735 469 EGFLDQEYNGRKMEDLGREFVRELHSRSLVQQS 501 (779)
Q Consensus 469 eg~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~ 501 (779)
-| +. .........+++.|...|+|+..
T Consensus 322 ~g-~~-----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LG-VE-----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HT-CC-----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cC-CC-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 12 11 11235677899999999999763
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.37 E-value=8.3e-13 Score=150.77 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=93.3
Q ss_pred cCCCccceEecccccccc-cccccccccccceeeccCCcchhh---chhhhcCccccceeecCCCcccccCCcc-cCCCC
Q 040735 618 GNLKHLRFLNLSRTNIQI-LPESINSLYNLHTILLEDCRRLKK---LCKNMGNLMKLHHLRNPNVHSLEEMPKG-FGKLT 692 (779)
Q Consensus 618 ~~l~~L~~L~l~~n~i~~-lp~~~~~L~~L~~L~l~~~~~~~~---lp~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~ 692 (779)
+.+++|++|++++|.++. +|..++++++|++|++++| .+.. +|..+.++++|++|++++|...+.+|.. +..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 566777777777777774 5777777777888888777 4443 3455777777888888777744336654 66677
Q ss_pred CCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc-----CCCCCCCCeE
Q 040735 693 CLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM-----LKPHQKLEEL 767 (779)
Q Consensus 693 ~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~-----l~~~~~L~~L 767 (779)
+|++|++..+.. .+..+..+. ++|+ .|++.++ .+..++...+ .+++|+.|....+.+.. +..+++|+.|
T Consensus 429 ~L~~L~l~~n~l-~~~~~~~l~--~~L~-~L~L~~N-~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 429 SILVLNLSSNML-TGSVFRCLP--PKVK-VLDLHNN-RIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp TCCEEECCSSCC-CGGGGSSCC--TTCS-EEECCSS-CCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred cCCEEECCCCCC-Ccchhhhhc--CcCC-EEECCCC-cCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence 777776544332 122222222 4565 6666654 3344444444 67777777544443332 4446778888
Q ss_pred EEeecCCC
Q 040735 768 TIAGYGGT 775 (779)
Q Consensus 768 ~l~~~~~~ 775 (779)
+|++|++.
T Consensus 503 ~l~~N~~~ 510 (562)
T 3a79_B 503 WLHDNPWD 510 (562)
T ss_dssp ECCSCCBC
T ss_pred EecCCCcC
Confidence 88887654
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.36 E-value=6.2e-13 Score=139.92 Aligned_cols=194 Identities=12% Similarity=0.085 Sum_probs=140.9
Q ss_pred cccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEeccccccccccccccccc
Q 040735 565 SDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLY 644 (779)
Q Consensus 565 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~ 644 (779)
..+++|+.|.+.++. +....+..+.++++|++|+|++|.++.+++ +..+++|++|++++|.++.+|. ++
T Consensus 31 ~~~~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~ 99 (317)
T 3o53_A 31 QSAWNVKELDLSGNP------LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GP 99 (317)
T ss_dssp TTGGGCSEEECTTSC------CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CT
T ss_pred ccCCCCCEEECcCCc------cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CC
Confidence 356789999888865 444445566799999999999999987765 8999999999999999988774 38
Q ss_pred ccceeeccCCcchhhchhhhcCccccceeecCCCcccccC-CcccCCCCCCcccCceeeCCCCCCCchhh-hccccccce
Q 040735 645 NLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEM-PKGFGKLTCLLTLSRFVVGKDSGSGLREL-KSLMHLQGT 722 (779)
Q Consensus 645 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~L~~L~~L~~~~~~~~~~~~~~~L-~~L~~L~~~ 722 (779)
+|++|++++| .+..+|.. .+++|++|++++|. +..+ |..++.+++|++|++..+... ...+..+ ..+++|+ .
T Consensus 100 ~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~l~~L~-~ 173 (317)
T 3o53_A 100 SIETLHAANN-NISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLE-H 173 (317)
T ss_dssp TCCEEECCSS-CCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCC-E
T ss_pred CcCEEECCCC-ccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC-cccHHHHhhccCcCC-E
Confidence 9999999999 66666543 47889999999999 4455 446888999999876544332 2223333 4677787 8
Q ss_pred eEEcccCCCCCcchhhhccCCCCCCCchHHHHhc----cCCCCCCCCeEEEeecCCCCCC
Q 040735 723 LQISKLENVKDVGDASEAQLNTKPDFKIEIRVLD----MLKPHQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 723 L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~----~l~~~~~L~~L~l~~~~~~~~P 778 (779)
|.+.++. +...+ ....+++|+.|....+.+. .+..+++|+.|+|++|.++.+|
T Consensus 174 L~L~~N~-l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 174 LNLQYNF-IYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp EECTTSC-CCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred EECCCCc-Ccccc--cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh
Confidence 8887653 33322 2234778888755444433 2445789999999999888776
No 98
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.36 E-value=5.4e-13 Score=147.42 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=33.1
Q ss_pred CCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCC
Q 040735 598 PRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPN 677 (779)
Q Consensus 598 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 677 (779)
++|+.|++++|.++.+|..+ .+|++|++++|.++.+|.. .++|++|++++| .+..+| .++++++|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCcccccc---CCCcEEECCCCccCcccCC---CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCC
Confidence 45666666666666555332 2333333333333332221 034444444444 333344 244444444444444
Q ss_pred Cc
Q 040735 678 VH 679 (779)
Q Consensus 678 ~~ 679 (779)
|.
T Consensus 163 N~ 164 (454)
T 1jl5_A 163 NS 164 (454)
T ss_dssp SC
T ss_pred Cc
Confidence 44
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=2.3e-12 Score=131.49 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=77.4
Q ss_pred ccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccc
Q 040735 564 VSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSL 643 (779)
Q Consensus 564 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L 643 (779)
+..+++|+.|.+.++. +. .++ .+..+++|+.|+|++|.++.+|. ++++++|++|+|++|.++.+|....
T Consensus 37 ~~~l~~L~~L~l~~n~------i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-- 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN------IQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-- 105 (263)
T ss_dssp HHHHTTCSEEECTTSC------CC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--
T ss_pred hhhcCcCcEEECcCCC------cc-cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--
Confidence 4455566666555543 11 112 34456666666666666666554 6666666666666666666554322
Q ss_pred cccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhcccccccee
Q 040735 644 YNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTL 723 (779)
Q Consensus 644 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L 723 (779)
.+|++|++++| .+..+| .+..+++|++|++++|. +..+| .++.+++|++|++..+... .+..+..+++|+ .|
T Consensus 106 ~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~---~~~~l~~l~~L~-~L 177 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVN-WI 177 (263)
T ss_dssp SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCC---BCTTSTTCCCCC-EE
T ss_pred CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCc---chHHhccCCCCC-EE
Confidence 56666666666 455544 35666666666666666 44454 4555666665544332221 113344444454 45
Q ss_pred EEcc
Q 040735 724 QISK 727 (779)
Q Consensus 724 ~i~~ 727 (779)
++.+
T Consensus 178 ~l~~ 181 (263)
T 1xeu_A 178 DLTG 181 (263)
T ss_dssp EEEE
T ss_pred eCCC
Confidence 4443
No 100
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.35 E-value=1.3e-12 Score=151.61 Aligned_cols=128 Identities=22% Similarity=0.236 Sum_probs=95.7
Q ss_pred ccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccC-ccccCCCccceEeccccccccccc-ccccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPE-SINSLYN 645 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~-~~~~L~~ 645 (779)
.+++.|.+.++. ++.-.+..|.++++|++|+|++|.|+.+| ..|.+|++|++|+|++|+++.+|+ .|.+|++
T Consensus 52 ~~~~~LdLs~N~------i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 52 FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred cCCCEEEeeCCC------CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 367888877764 33322334558888888888888888875 468888888888888888888875 4788888
Q ss_pred cceeeccCCcchhhchhh-hcCccccceeecCCCcccc-cCCcccCCCCCCcccCceee
Q 040735 646 LHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSLE-EMPKGFGKLTCLLTLSRFVV 702 (779)
Q Consensus 646 L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~-~~p~~~~~L~~L~~L~~~~~ 702 (779)
|++|++++| .+..+|.. |+++++|++|++++|.+.. .+|..++.+++|++|++..+
T Consensus 126 L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 126 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 888888888 67777654 7888888888888887322 35667788888888865443
No 101
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=8.2e-13 Score=125.98 Aligned_cols=130 Identities=17% Similarity=0.169 Sum_probs=101.7
Q ss_pred ccccccccceEecccCcccccccccchHhhhhhcCC-CCccEEEecCCCCCccCccccCCCccceEeccccccccccccc
Q 040735 562 KSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNL-PRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESI 640 (779)
Q Consensus 562 ~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~ 640 (779)
+.+.++.+|+.|.+.++. +. .+ +.+..+ ++|++|++++|.++.+ ..++++++|++|+|++|.++.+|+.+
T Consensus 13 ~~~~~~~~L~~L~l~~n~------l~-~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK------IP-VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTSC------CC-SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEeeCCC------Cc-hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 345567788888887765 22 22 334543 4899999999998887 67888999999999999999888665
Q ss_pred -ccccccceeeccCCcchhhchh--hhcCccccceeecCCCcccccCCcc----cCCCCCCcccCceee
Q 040735 641 -NSLYNLHTILLEDCRRLKKLCK--NMGNLMKLHHLRNPNVHSLEEMPKG----FGKLTCLLTLSRFVV 702 (779)
Q Consensus 641 -~~L~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~----~~~L~~L~~L~~~~~ 702 (779)
..+++|++|++++| .++.+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|++..+
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 88999999999998 7788887 78888999999999998 6677775 788888888876554
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=1.5e-12 Score=129.81 Aligned_cols=127 Identities=20% Similarity=0.308 Sum_probs=101.1
Q ss_pred ccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCc-cccCCCccceEecccccccccccc-cccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPN-EIGNLKHLRFLNLSRTNIQILPES-INSLYN 645 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~ 645 (779)
++|+.|.+.++. +....+..+.++++|++|+|++|.++.+|. .|.++++|++|+|++|.|+.+|.. +..+++
T Consensus 40 ~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQ------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCEEEcCCCc------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 678888887765 444444455588999999999999988874 468899999999999999988665 678999
Q ss_pred cceeeccCCcchhhchhhhcCccccceeecCCCcccccCCc-ccCCCCCCcccCceee
Q 040735 646 LHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPK-GFGKLTCLLTLSRFVV 702 (779)
Q Consensus 646 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L~~~~~ 702 (779)
|++|++++| .+..+|..+..+++|++|++++|. +..+|. .+..+++|+.|++..+
T Consensus 114 L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 114 LKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred hCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 999999998 777889888999999999999998 666664 4777888888765443
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.34 E-value=8.9e-13 Score=138.27 Aligned_cols=177 Identities=14% Similarity=0.124 Sum_probs=115.8
Q ss_pred CCCCccEEEecCCCCC-ccCccc--cCCCccceEeccccccccc-c----cccccccccceeeccCCcchhhc-hhhhcC
Q 040735 596 NLPRLRVFSLHGYHIS-KLPNEI--GNLKHLRFLNLSRTNIQIL-P----ESINSLYNLHTILLEDCRRLKKL-CKNMGN 666 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~-~lp~~~--~~l~~L~~L~l~~n~i~~l-p----~~~~~L~~L~~L~l~~~~~~~~l-p~~~~~ 666 (779)
.++.|+.|++++|.+. ..|..+ +++++|++|+|++|.++.. | ..+..+++|++|++++| .+..+ |..++.
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhcc
Confidence 4566888888888887 456666 7888888888888888742 2 23456888888888888 44444 456788
Q ss_pred ccccceeecCCCccccc--CC--cccCCCCCCcccCceeeCCCCCCCchh-----hhccccccceeEEcccCCCCCcchh
Q 040735 667 LMKLHHLRNPNVHSLEE--MP--KGFGKLTCLLTLSRFVVGKDSGSGLRE-----LKSLMHLQGTLQISKLENVKDVGDA 737 (779)
Q Consensus 667 l~~L~~L~l~~~~~~~~--~p--~~~~~L~~L~~L~~~~~~~~~~~~~~~-----L~~L~~L~~~L~i~~~~~~~~~~~~ 737 (779)
+++|++|++++|.+.+. +| ..++.+++|++|++..+.. ..+.. +.++++|+ .|+++++... ...+.
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l---~~l~~~~~~l~~~l~~L~-~L~Ls~N~l~-~~~p~ 242 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM---ETPTGVCAALAAAGVQPH-SLDLSHNSLR-ATVNP 242 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC---CCHHHHHHHHHHHTCCCS-SEECTTSCCC-CCCCS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC---CchHHHHHHHHhcCCCCC-EEECCCCCCC-ccchh
Confidence 88888888888874321 32 2246788888887654433 12222 35667777 7777765432 22112
Q ss_pred hhccC---CCCCCCchHHHHhccCCC--CCCCCeEEEeecCCCCCC
Q 040735 738 SEAQL---NTKPDFKIEIRVLDMLKP--HQKLEELTIAGYGGTKFP 778 (779)
Q Consensus 738 ~~~~L---~~l~~L~~~~~~l~~l~~--~~~L~~L~l~~~~~~~~P 778 (779)
.+..+ ++|++|+...+.+..+.. +++|+.|+|++|.++.+|
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSCC
T ss_pred hHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCCc
Confidence 22333 577777555555544422 379999999999988776
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=1.8e-12 Score=132.22 Aligned_cols=143 Identities=17% Similarity=0.178 Sum_probs=115.6
Q ss_pred CceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCc
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKH 622 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~ 622 (779)
..++.+.+.++.+. .++.+..+++|+.|.+.++. +.. +++ +.++++|+.|+|++|.++.+|.... .+
T Consensus 41 ~~L~~L~l~~n~i~---~l~~l~~l~~L~~L~L~~N~------i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~ 107 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ---SLAGMQFFTNLKELHLSHNQ------ISD-LSP-LKDLTKLEELSVNRNRLKNLNGIPS--AC 107 (263)
T ss_dssp TTCSEEECTTSCCC---CCTTGGGCTTCCEEECCSSC------CCC-CGG-GTTCSSCCEEECCSSCCSCCTTCCC--SS
T ss_pred CcCcEEECcCCCcc---cchHHhhCCCCCEEECCCCc------cCC-Chh-hccCCCCCEEECCCCccCCcCcccc--Cc
Confidence 56778887766443 34567788999999998865 332 333 6699999999999999999875443 89
Q ss_pred cceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceee
Q 040735 623 LRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVV 702 (779)
Q Consensus 623 L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~ 702 (779)
|++|+|++|.++.+| .+..+++|++|++++| .+..+| .+..+++|++|++++|. +..+ ..+..+++|+.|++..+
T Consensus 108 L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEE
T ss_pred ccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCC
Confidence 999999999999886 5899999999999999 777887 68999999999999999 5566 56888999999876654
Q ss_pred C
Q 040735 703 G 703 (779)
Q Consensus 703 ~ 703 (779)
.
T Consensus 183 ~ 183 (263)
T 1xeu_A 183 K 183 (263)
T ss_dssp E
T ss_pred c
Confidence 3
No 105
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.34 E-value=3.4e-12 Score=140.94 Aligned_cols=116 Identities=25% Similarity=0.295 Sum_probs=74.7
Q ss_pred ccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLH 647 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~ 647 (779)
++|+.|.+.++. +.. +| .+.++++|++|++++|.++.+|..+ .+|++|++++|.++.+| .++++++|+
T Consensus 131 ~~L~~L~L~~n~------l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~ 198 (454)
T 1jl5_A 131 PLLEYLGVSNNQ------LEK-LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLT 198 (454)
T ss_dssp TTCCEEECCSSC------CSS-CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCC
T ss_pred CCCCEEECcCCC------CCC-Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCC
Confidence 466666665543 322 33 3556777777777777777666543 36777777777777766 477777777
Q ss_pred eeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCcee
Q 040735 648 TILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFV 701 (779)
Q Consensus 648 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~ 701 (779)
+|++++| .+..+|... ++|++|++++|. +..+|. ++.+++|++|++..
T Consensus 199 ~L~l~~N-~l~~l~~~~---~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 199 AIYADNN-SLKKLPDLP---LSLESIVAGNNI-LEELPE-LQNLPFLTTIYADN 246 (454)
T ss_dssp EEECCSS-CCSSCCCCC---TTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCS
T ss_pred EEECCCC-cCCcCCCCc---CcccEEECcCCc-CCcccc-cCCCCCCCEEECCC
Confidence 7777777 555555432 467777777776 556763 77777777776544
No 106
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.34 E-value=4.5e-12 Score=144.56 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=78.8
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNL 620 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l 620 (779)
....++.+.+.++.+.. ++. .+++|+.|.+.++. +.. +|. .+++|+.|++++|.++.+|.. +
T Consensus 79 ~l~~L~~L~Ls~N~l~~---lp~--~l~~L~~L~Ls~N~------l~~-l~~---~l~~L~~L~L~~N~l~~lp~~---l 140 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS---LPV--LPPGLLELSIFSNP------LTH-LPA---LPSGLCKLWIFGNQLTSLPVL---P 140 (622)
T ss_dssp CCTTCCEEEECSCCCSC---CCC--CCTTCCEEEECSCC------CCC-CCC---CCTTCCEEECCSSCCSCCCCC---C
T ss_pred cCCCCCEEEcCCCcCCc---CCC--CCCCCCEEECcCCc------CCC-CCC---CCCCcCEEECCCCCCCcCCCC---C
Confidence 34677888887765432 333 67889999888765 221 222 567899999999999888864 4
Q ss_pred CccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCc
Q 040735 621 KHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPK 686 (779)
Q Consensus 621 ~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 686 (779)
++|++|+|++|.++.+|..+ .+|+.|++++| .+..+| ..+++|++|++++|. +..+|.
T Consensus 141 ~~L~~L~Ls~N~l~~l~~~~---~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~ 198 (622)
T 3g06_A 141 PGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQ-LASLPT 198 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC
T ss_pred CCCCEEECcCCcCCCcCCcc---CCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCC-CCCCCC
Confidence 78889999999888877643 44555666655 455555 334555566665555 444443
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.33 E-value=1.9e-12 Score=147.39 Aligned_cols=144 Identities=21% Similarity=0.294 Sum_probs=105.5
Q ss_pred CCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCC
Q 040735 542 SQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLK 621 (779)
Q Consensus 542 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~ 621 (779)
...++.|.+..+.+.. ++.+..+++|+.|.+.++. +.. ++.+..+++|+.|+|++|.++.+| .+..|+
T Consensus 64 l~~L~~L~Ls~N~l~~---~~~l~~l~~L~~L~Ls~N~------l~~--l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~ 131 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTD---IKPLTNLKNLGWLFLDENK------IKD--LSSLKDLKKLKSLSLEHNGISDIN-GLVHLP 131 (605)
T ss_dssp CTTCCEEECTTSCCCC---CGGGGGCTTCCEEECCSSC------CCC--CTTSTTCTTCCEEECTTSCCCCCG-GGGGCT
T ss_pred CCCCCEEEeeCCCCCC---ChhhccCCCCCEEECcCCC------CCC--ChhhccCCCCCEEEecCCCCCCCc-cccCCC
Confidence 4567777776654433 3347778888888887765 222 335668888888888888888764 577888
Q ss_pred ccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCcee
Q 040735 622 HLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFV 701 (779)
Q Consensus 622 ~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~ 701 (779)
+|++|+|++|.++.+ +.++.|++|+.|+|++| .+..+++ +..+++|++|+|++|. +..+| .++.|++|+.|++..
T Consensus 132 ~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 132 QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFS 206 (605)
T ss_dssp TCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEECCS
T ss_pred ccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEccC
Confidence 888888888888877 56788888888888888 5666655 8888888888888887 55665 477888888876544
Q ss_pred e
Q 040735 702 V 702 (779)
Q Consensus 702 ~ 702 (779)
+
T Consensus 207 N 207 (605)
T 1m9s_A 207 Q 207 (605)
T ss_dssp E
T ss_pred C
Confidence 3
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.32 E-value=2.2e-12 Score=137.69 Aligned_cols=221 Identities=14% Similarity=0.084 Sum_probs=149.1
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhc-CCCCccE-EEecCCCCCccC-ccc
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRV-FSLHGYHISKLP-NEI 617 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~-L~l~~n~l~~lp-~~~ 617 (779)
++..++++.+.++.+.... ...+.++++|+.|.+.++. +...++...+ ++++|.. +.+.+|+++.+| ..|
T Consensus 28 l~~~l~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~------i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQND------VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp CCTTCSEEEEESCCCSEEC-TTSSTTCTTCCEEEEECCT------TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred cCCCCCEEEccCCcCCCcC-HHHHcCCCCCCEEECcCCC------CCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 5567889998887654321 1347889999999998865 3344555555 7877664 677788999874 678
Q ss_pred cCCCccceEeccccccccccc-ccccccccceeeccCCcchhhchhh-hcCcc-ccceeecCCCcccccCCcccCCCCCC
Q 040735 618 GNLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKLCKN-MGNLM-KLHHLRNPNVHSLEEMPKGFGKLTCL 694 (779)
Q Consensus 618 ~~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~-~L~~L~l~~~~~~~~~p~~~~~L~~L 694 (779)
.++++|++|++++|+++.+|. .+....++..|++.++..+..+|.. +..+. .|+.|++++|. +..+|..+...++|
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQL 179 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccch
Confidence 899999999999999998865 3556677888888776677777764 55554 68888998888 77888877777778
Q ss_pred cccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchH-HHHhccCCCCCCCCeEEEee
Q 040735 695 LTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIE-IRVLDMLKPHQKLEELTIAG 771 (779)
Q Consensus 695 ~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~-~~~l~~l~~~~~L~~L~l~~ 771 (779)
++|.+...+....-....+..+++|+ .|++++. .+..++...+.+|.+|+.+... ...+..+..+++|+.+++.+
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~-~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPV-ILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCS-EEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hHHhhccCCcccCCCHHHhccCcccc-hhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 87765433332221222356777777 7888764 4455555556666666555321 12233344466777777654
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=3.1e-12 Score=126.69 Aligned_cols=127 Identities=23% Similarity=0.307 Sum_probs=94.4
Q ss_pred ccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCcc-CccccCCCccceEecccccccccccc-cccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKL-PNEIGNLKHLRFLNLSRTNIQILPES-INSLYN 645 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~ 645 (779)
++|+.|.+.++. +....+..+.++++|++|+|++|.++.+ |..|.++++|++|+|++|.|+.+|.. |.++++
T Consensus 32 ~~l~~L~l~~n~------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQNT------IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSSC------CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCEEECCCCc------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 567777777654 3322222344788888888888888876 67788888888888888888888765 578888
Q ss_pred cceeeccCCcchhhc-hhhhcCccccceeecCCCcccccCCc-ccCCCCCCcccCceee
Q 040735 646 LHTILLEDCRRLKKL-CKNMGNLMKLHHLRNPNVHSLEEMPK-GFGKLTCLLTLSRFVV 702 (779)
Q Consensus 646 L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L~~~~~ 702 (779)
|++|+|++| .+..+ |..+..+++|++|++++|. +..+|. .+..+++|++|++..+
T Consensus 106 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 106 LQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCC
Confidence 888888888 55555 5568888888888888888 555654 3777888888765433
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.31 E-value=2.5e-13 Score=147.33 Aligned_cols=228 Identities=14% Similarity=0.119 Sum_probs=148.4
Q ss_pred CceeEEEEEeccccccc--cc-ccccccccceEecccCcccccccccchHhhhhh-------cCCCCccEEEecCCCCCc
Q 040735 543 QSLRHFSYIHGEYDGKK--RL-KSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRL-------LNLPRLRVFSLHGYHISK 612 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~--~~-~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~-------~~l~~L~~L~l~~n~l~~ 612 (779)
..++++.+.++.+.... .+ ..+..+++|+.|.+.++.. +.+.+.+|..+ .++++|++|+|++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~---~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT---GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT---TSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccccc---CccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 45777777665433211 01 2255788899998877531 12333444433 588999999999998886
Q ss_pred -----cCccccCCCccceEecccccccc-----cccccccc---------cccceeeccCCcch-hhch---hhhcCccc
Q 040735 613 -----LPNEIGNLKHLRFLNLSRTNIQI-----LPESINSL---------YNLHTILLEDCRRL-KKLC---KNMGNLMK 669 (779)
Q Consensus 613 -----lp~~~~~l~~L~~L~l~~n~i~~-----lp~~~~~L---------~~L~~L~l~~~~~~-~~lp---~~~~~l~~ 669 (779)
+|..+.++++|++|+|++|.++. ++..+..+ ++|++|++++|... ..+| ..+..+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 67788889999999999998863 33444455 89999999998432 3445 46778889
Q ss_pred cceeecCCCcccc------cCCcccCCCCCCcccCceeeCCCC---CCCchhhhccccccceeEEcccCCCCCcc----h
Q 040735 670 LHHLRNPNVHSLE------EMPKGFGKLTCLLTLSRFVVGKDS---GSGLRELKSLMHLQGTLQISKLENVKDVG----D 736 (779)
Q Consensus 670 L~~L~l~~~~~~~------~~p~~~~~L~~L~~L~~~~~~~~~---~~~~~~L~~L~~L~~~L~i~~~~~~~~~~----~ 736 (779)
|++|++++|. ++ .+|..+.++++|++|++..+.... ......+..+++|+ .|.+.++. +.... .
T Consensus 189 L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~-~L~L~~n~-i~~~~~~~l~ 265 (386)
T 2ca6_A 189 LHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR-ELGLNDCL-LSARGAAAVV 265 (386)
T ss_dssp CCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC-EEECTTCC-CCHHHHHHHH
T ss_pred cCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC-EEECCCCC-CchhhHHHHH
Confidence 9999999998 44 244467888899988765443210 11234567778888 88887653 22211 1
Q ss_pred hhh--ccCCCCCCCchHHH---------HhccC-CCCCCCCeEEEeecCCCC
Q 040735 737 ASE--AQLNTKPDFKIEIR---------VLDML-KPHQKLEELTIAGYGGTK 776 (779)
Q Consensus 737 ~~~--~~L~~l~~L~~~~~---------~l~~l-~~~~~L~~L~l~~~~~~~ 776 (779)
..+ ..+++|+.|....+ ....+ ..+++|++|+|++|.++.
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 112 23677777733322 33444 347899999999987764
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=5.6e-12 Score=125.72 Aligned_cols=128 Identities=24% Similarity=0.279 Sum_probs=107.5
Q ss_pred CCccEEEecCCCCCcc-CccccCCCccceEecccccccccccc-cccccccceeeccCCcchhhchhh-hcCccccceee
Q 040735 598 PRLRVFSLHGYHISKL-PNEIGNLKHLRFLNLSRTNIQILPES-INSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLR 674 (779)
Q Consensus 598 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~ 674 (779)
++|++|+|++|.++.+ |..|.++++|++|+|++|.++.+|.. +..+++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence 7899999999999987 67799999999999999999999765 689999999999999 77778765 68999999999
Q ss_pred cCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccC
Q 040735 675 NPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLE 729 (779)
Q Consensus 675 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~ 729 (779)
+++|. +..+|..++.+++|++|++..+... ......+..+++|+ .|.+.++.
T Consensus 119 Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~-~L~l~~N~ 170 (229)
T 3e6j_A 119 MCCNK-LTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLT-HAYLFGNP 170 (229)
T ss_dssp CCSSC-CCSCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCC-EEECTTSC
T ss_pred ccCCc-ccccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCC-EEEeeCCC
Confidence 99999 7799999999999999986654332 22224467778888 88887653
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=3.1e-12 Score=126.68 Aligned_cols=126 Identities=16% Similarity=0.197 Sum_probs=84.7
Q ss_pred cceEecccCcccccccccchHhhhhh-cCCCCccEEEecCCCCCccCc-cccCCCccceEecccccccccccc-cccccc
Q 040735 569 RLRTFLPVNLSDYRRNYLAWSVLQRL-LNLPRLRVFSLHGYHISKLPN-EIGNLKHLRFLNLSRTNIQILPES-INSLYN 645 (779)
Q Consensus 569 ~Lr~l~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~ 645 (779)
.++.|.+.++. +....+..+ .++++|++|+|++|.++.++. .|.++++|++|+|++|.++.+|+. |.++++
T Consensus 33 ~~~~L~L~~N~------l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 106 (220)
T 2v70_A 33 YTAELRLNNNE------FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106 (220)
T ss_dssp TCSEEECCSSC------CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS
T ss_pred CCCEEEcCCCc------CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC
Confidence 45566666544 333223333 377778888888888877653 677788888888888888776553 777888
Q ss_pred cceeeccCCcchhhc-hhhhcCccccceeecCCCcccccCCcccCCCCCCcccCcee
Q 040735 646 LHTILLEDCRRLKKL-CKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFV 701 (779)
Q Consensus 646 L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~ 701 (779)
|++|+|++| .+..+ |..+..+++|++|++++|.+.+..|..+..+++|++|++..
T Consensus 107 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 107 LKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 888888887 44444 55677788888888888773333356677777777776543
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=2.2e-12 Score=150.75 Aligned_cols=107 Identities=22% Similarity=0.248 Sum_probs=89.5
Q ss_pred hcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCcccccee
Q 040735 594 LLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHL 673 (779)
Q Consensus 594 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 673 (779)
+..++.|+.|+|++|.+..+|..+.++++|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..+++|++|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEE
Confidence 4488888889998888888888888888889999988888888888888888999999888 666888888888889999
Q ss_pred ecCCCcccccCCcccCCCCCCcccCceee
Q 040735 674 RNPNVHSLEEMPKGFGKLTCLLTLSRFVV 702 (779)
Q Consensus 674 ~l~~~~~~~~~p~~~~~L~~L~~L~~~~~ 702 (779)
+|++|. ++.+|.+|++|++|++|++..+
T Consensus 299 ~L~~N~-l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 299 YFFDNM-VTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp ECCSSC-CCCCCSSTTSCTTCCCEECTTS
T ss_pred ECCCCC-CCccChhhhcCCCccEEeCCCC
Confidence 888887 6788888888888888875444
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=6.7e-12 Score=124.26 Aligned_cols=128 Identities=21% Similarity=0.255 Sum_probs=104.7
Q ss_pred CCccEEEecCCCCCccCc-cccCCCccceEeccccccccc-ccccccccccceeeccCCcchhhchhh-hcCccccceee
Q 040735 598 PRLRVFSLHGYHISKLPN-EIGNLKHLRFLNLSRTNIQIL-PESINSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLR 674 (779)
Q Consensus 598 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~i~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~ 674 (779)
+.|+.|+|++|.++.+|. .|.++++|++|+|++|.++.+ |..|.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 579999999999998874 789999999999999999977 778999999999999999 78888876 68899999999
Q ss_pred cCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEccc
Q 040735 675 NPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKL 728 (779)
Q Consensus 675 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~ 728 (779)
+++|.+....|..|+.+++|++|++..+... ......+..+++|+ .|.+.++
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~N 162 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQ-TMHLAQN 162 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCC-EEECCSS
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCC-EEEeCCC
Confidence 9999944434566899999999976554432 22233466677777 7877764
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=1.7e-12 Score=120.09 Aligned_cols=126 Identities=19% Similarity=0.226 Sum_probs=100.7
Q ss_pred CCCCccEEEecCCCCC--ccCccccCCCccceEecccccccccccccccccccceeeccCCcchhh-chhhhcCccccce
Q 040735 596 NLPRLRVFSLHGYHIS--KLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKK-LCKNMGNLMKLHH 672 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~-lp~~~~~l~~L~~ 672 (779)
..++|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++| .+.. +|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence 4578999999999998 8899899999999999999999988 77999999999999999 5555 8888888999999
Q ss_pred eecCCCcccccCC--cccCCCCCCcccCceeeCCCCCCCc--hhhhccccccceeEE
Q 040735 673 LRNPNVHSLEEMP--KGFGKLTCLLTLSRFVVGKDSGSGL--RELKSLMHLQGTLQI 725 (779)
Q Consensus 673 L~l~~~~~~~~~p--~~~~~L~~L~~L~~~~~~~~~~~~~--~~L~~L~~L~~~L~i 725 (779)
|++++|. +..+| ..++.+++|++|++..+.......+ ..+..+++|+ .|++
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~-~L~l 147 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT-YLDG 147 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC-EETT
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc-cccC
Confidence 9999999 66654 7788999999987654433221111 2355566666 5543
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=5.6e-12 Score=119.13 Aligned_cols=137 Identities=21% Similarity=0.247 Sum_probs=111.8
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCc-cCccccC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISK-LPNEIGN 619 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~ 619 (779)
.+..++++.+.++.+........+..+++|+.|.+.++. +... ..+..+++|++|++++|.++. +|..+.+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~------l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC------CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC------CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 456788888887755411222335788999999998865 3322 556699999999999999997 7777788
Q ss_pred CCccceEecccccccccc--cccccccccceeeccCCcchhhchh----hhcCccccceeecCCCcccccCCcc
Q 040735 620 LKHLRFLNLSRTNIQILP--ESINSLYNLHTILLEDCRRLKKLCK----NMGNLMKLHHLRNPNVHSLEEMPKG 687 (779)
Q Consensus 620 l~~L~~L~l~~n~i~~lp--~~~~~L~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~~~~~~~~p~~ 687 (779)
+++|++|+|++|.++.+| ..+..+++|++|++++| .+..+|. .+..+++|++|++++|. ..++|..
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 999999999999999887 78999999999999999 7778876 78999999999999998 6677754
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.28 E-value=6.3e-13 Score=144.12 Aligned_cols=131 Identities=12% Similarity=0.143 Sum_probs=64.0
Q ss_pred ccccccceEecccCcccccccccchHhh----hhhcCCCCccEEEecCCCCCc----cCccc-------cCCCccceEec
Q 040735 564 VSDVERLRTFLPVNLSDYRRNYLAWSVL----QRLLNLPRLRVFSLHGYHISK----LPNEI-------GNLKHLRFLNL 628 (779)
Q Consensus 564 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~----lp~~~-------~~l~~L~~L~l 628 (779)
+..+++|+.|.+.++. +....+ ..+.++++|++|+|++|.+.. +|..+ .++++|++|+|
T Consensus 28 l~~~~~L~~L~L~~n~------i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNT------IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HHHCSCCCEEECTTSE------ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HhcCCCccEEECCCCC------CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3345556666555543 222222 223355666666666654332 23222 45566666666
Q ss_pred ccccccc-----cccccccccccceeeccCCcchh----hchhhhcCc---------cccceeecCCCccc-ccCC---c
Q 040735 629 SRTNIQI-----LPESINSLYNLHTILLEDCRRLK----KLCKNMGNL---------MKLHHLRNPNVHSL-EEMP---K 686 (779)
Q Consensus 629 ~~n~i~~-----lp~~~~~L~~L~~L~l~~~~~~~----~lp~~~~~l---------~~L~~L~l~~~~~~-~~~p---~ 686 (779)
++|.++. +|..+..+++|++|+|++|.... .++..+..+ ++|++|++++|.+. ..+| .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 6666554 45555666666666666663211 122223333 56666666666522 1233 2
Q ss_pred ccCCCCCCcccCce
Q 040735 687 GFGKLTCLLTLSRF 700 (779)
Q Consensus 687 ~~~~L~~L~~L~~~ 700 (779)
.+..+++|++|++.
T Consensus 182 ~l~~~~~L~~L~L~ 195 (386)
T 2ca6_A 182 TFQSHRLLHTVKMV 195 (386)
T ss_dssp HHHHCTTCCEEECC
T ss_pred HHHhCCCcCEEECc
Confidence 34455555555543
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=5.5e-12 Score=142.06 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=113.0
Q ss_pred ceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCcc
Q 040735 544 SLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHL 623 (779)
Q Consensus 544 ~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L 623 (779)
.++.+.+.++.... ++.- -+++|+.|.+.++. +. .+| ..+++|++|+|++|.++.+|. +++ +|
T Consensus 60 ~L~~L~Ls~n~L~~---lp~~-l~~~L~~L~Ls~N~------l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSS---LPDN-LPPQITVLEITQNA------LI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCCSC---CCSC-CCTTCSEEECCSSC------CS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TC
T ss_pred CccEEEeCCCCCCc---cCHh-HcCCCCEEECcCCC------Cc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CC
Confidence 56777776654433 2221 13678888888765 33 344 356889999999999988887 665 89
Q ss_pred ceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeC
Q 040735 624 RFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVG 703 (779)
Q Consensus 624 ~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~ 703 (779)
++|+|++|.++.+|. .+++|++|++++| .+..+|. .+++|++|++++|. +..+|. ++ ++|+.|++..+.
T Consensus 123 ~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSC
T ss_pred CEEECCCCcCCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCC
Confidence 999999999988887 6788999999988 6777887 57889999999998 666887 66 788888765443
Q ss_pred CCCCCCchhhhccccc-------cceeEEcccCCCCCcchhhhccCCCCCCC
Q 040735 704 KDSGSGLRELKSLMHL-------QGTLQISKLENVKDVGDASEAQLNTKPDF 748 (779)
Q Consensus 704 ~~~~~~~~~L~~L~~L-------~~~L~i~~~~~~~~~~~~~~~~L~~l~~L 748 (779)
... +..+.. +| + .|.+.++ .+..++...+ .+++|+.|
T Consensus 192 L~~---lp~~~~--~L~~~~~~L~-~L~Ls~N-~l~~lp~~l~-~l~~L~~L 235 (571)
T 3cvr_A 192 LES---LPAVPV--RNHHSEETEI-FFRCREN-RITHIPENIL-SLDPTCTI 235 (571)
T ss_dssp CSS---CCCCC----------CCE-EEECCSS-CCCCCCGGGG-GSCTTEEE
T ss_pred CCc---hhhHHH--hhhcccccce-EEecCCC-cceecCHHHh-cCCCCCEE
Confidence 321 111222 34 5 6666653 3334443332 35555555
No 119
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.27 E-value=5.4e-11 Score=119.75 Aligned_cols=198 Identities=16% Similarity=0.101 Sum_probs=118.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
..++||+..++.+..++.... ....+.|+|++|+||||||+.+++.......+.. ........ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHh
Confidence 469999999999999997543 2358899999999999999999864321111100 00000000 00000
Q ss_pred HHh-----hcCCCCCcccHHHHHHHHHHH----hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhh-
Q 040735 265 NSI-----ASDQCTDKDDLNLLQEKLKKQ----LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGV- 334 (779)
Q Consensus 265 ~~l-----~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v- 334 (779)
... ..... .....+.....+... ..+++.+||+||++.-+...+..+...+.....+..+|+||+....
T Consensus 91 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETT-CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCc-ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 00000 111112222222111 1356899999999765556666666665554557788888876532
Q ss_pred Hhh-hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhh
Q 040735 335 AET-MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 399 (779)
Q Consensus 335 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l 399 (779)
... ......+.+.+++.++..+++...+..... ..+ .+..+.|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 122357899999999999999877643221 112 3557789999999999988776543
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=4.9e-13 Score=156.25 Aligned_cols=118 Identities=25% Similarity=0.331 Sum_probs=94.0
Q ss_pred cccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEeccccccccccccccc
Q 040735 563 SVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINS 642 (779)
Q Consensus 563 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~ 642 (779)
.+..+.+|+.|.+.++. +. .+|..++++++|++|+|++|.|+.+|..|++|++|++|+|++|.|+.+|..|++
T Consensus 219 ~~~~l~~L~~L~Ls~n~------l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ------IF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp ---CCCCCCEEECTTSC------CS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred hhccCCCCcEEECCCCC------CC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 35567788888887765 32 566677788889999999998888888888888999999999888888888888
Q ss_pred ccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCccc
Q 040735 643 LYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGF 688 (779)
Q Consensus 643 L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~ 688 (779)
|.+|++|+|++| .++.+|..|++|++|++|+|++|.+.+.+|..+
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 888999999888 777888888888899999998888555555544
No 121
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.27 E-value=4.9e-12 Score=146.62 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=117.0
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhh-hcCCCCccEEEecCCCCCccC-cccc
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQR-LLNLPRLRVFSLHGYHISKLP-NEIG 618 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~lp-~~~~ 618 (779)
++..++++.+.++.+.... ...+.++++|+.|.+.++. +. .+++. |.++++|++|+|++|.++.+| ..|+
T Consensus 50 lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~------i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE------IQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp SCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC------CC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred CCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc------CC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 6678899998887654332 2457899999999998875 33 34444 449999999999999999987 4689
Q ss_pred CCCccceEeccccccccccc-ccccccccceeeccCCcchh--hchhhhcCccccceeecCCCcccccCCcccCCCCCCc
Q 040735 619 NLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLK--KLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLL 695 (779)
Q Consensus 619 ~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~ 695 (779)
+|++|++|+|++|+++.+|+ .|++|++|++|++++| .+. .+|..++.+++|++|++++|.+.+..|..+..+.+++
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 99999999999999999976 5899999999999999 554 3578899999999999999994433444565555554
Q ss_pred c
Q 040735 696 T 696 (779)
Q Consensus 696 ~ 696 (779)
.
T Consensus 201 ~ 201 (635)
T 4g8a_A 201 L 201 (635)
T ss_dssp T
T ss_pred h
Confidence 3
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=1.4e-11 Score=120.84 Aligned_cols=125 Identities=28% Similarity=0.404 Sum_probs=83.3
Q ss_pred ccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCccCc-cccCCCccceEecccccccccccc-ccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISKLPN-EIGNLKHLRFLNLSRTNIQILPES-INSLY 644 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~ 644 (779)
++|+.|.+.++. +. .++...+ ++++|++|++++|.++.+|. .|.++++|++|+|++|.++.+|.. +.+++
T Consensus 28 ~~l~~L~l~~n~------l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 100 (208)
T 2o6s_A 28 AQTTYLDLETNS------LK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100 (208)
T ss_dssp TTCSEEECCSSC------CC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEcCCCc------cC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence 466677666654 32 2333333 77777778887777777654 356777777888877777777654 56777
Q ss_pred ccceeeccCCcchhhchhh-hcCccccceeecCCCcccccCCcc-cCCCCCCcccCcee
Q 040735 645 NLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSLEEMPKG-FGKLTCLLTLSRFV 701 (779)
Q Consensus 645 ~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~ 701 (779)
+|++|++++| .+..+|.. +.++++|++|++++|. +..+|.. ++.+++|++|++..
T Consensus 101 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 101 QLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecC
Confidence 7777777777 55566554 5777777777777777 4455554 66677777765443
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.24 E-value=1.9e-11 Score=120.98 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=108.6
Q ss_pred cCCceeEEEEEecccccccccccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCc-cccC
Q 040735 541 FSQSLRHFSYIHGEYDGKKRLKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPN-EIGN 619 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~ 619 (779)
++..++.+.+..+.+........+..+++|+.|.+.++. +....+..+.++++|++|+|++|.++.+|. .|.+
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 103 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK------ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG 103 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc------CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC
Confidence 455677888877765443222346789999999998865 433333345699999999999999998864 5899
Q ss_pred CCccceEeccccccccc-ccccccccccceeeccCCcchhhc-hhhhcCccccceeecCCCccc
Q 040735 620 LKHLRFLNLSRTNIQIL-PESINSLYNLHTILLEDCRRLKKL-CKNMGNLMKLHHLRNPNVHSL 681 (779)
Q Consensus 620 l~~L~~L~l~~n~i~~l-p~~~~~L~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~ 681 (779)
+++|++|+|++|.++.+ |..+..+++|++|+|++| .+..+ |..+..+++|++|++++|...
T Consensus 104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999999999999987 678999999999999999 66666 778999999999999999843
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.23 E-value=2.6e-11 Score=118.99 Aligned_cols=148 Identities=22% Similarity=0.234 Sum_probs=113.1
Q ss_pred CCCccEEEecCCCCCccCc-cccCCCccceEecccccccccccc-cccccccceeeccCCcchhhchhh-hcCcccccee
Q 040735 597 LPRLRVFSLHGYHISKLPN-EIGNLKHLRFLNLSRTNIQILPES-INSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHL 673 (779)
Q Consensus 597 l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L 673 (779)
.++|++|++++|.++.+|. .|+++++|++|++++|.++.+|.. +..+++|++|++++| .+..+|.. +.++++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 4579999999999998875 478999999999999999988765 689999999999999 67777765 7899999999
Q ss_pred ecCCCcccccCCcc-cCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHH
Q 040735 674 RNPNVHSLEEMPKG-FGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEI 752 (779)
Q Consensus 674 ~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~ 752 (779)
++++|. +..+|.. ++++++|++|++..+... ......+..+++|+ .|.+.++... ..+++++.|....
T Consensus 106 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~-~L~l~~N~~~--------~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 106 ALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQ-YIWLHDNPWD--------CTCPGIRYLSEWI 174 (208)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCC-EEECCSCCBC--------CCTTTTHHHHHHH
T ss_pred EcCCCc-CcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCcc-EEEecCCCee--------cCCCCHHHHHHHH
Confidence 999999 6667665 788999999976554332 22223366777887 8888764322 3345566665555
Q ss_pred HHhc
Q 040735 753 RVLD 756 (779)
Q Consensus 753 ~~l~ 756 (779)
+.+.
T Consensus 175 n~~~ 178 (208)
T 2o6s_A 175 NKHS 178 (208)
T ss_dssp HHCT
T ss_pred HhCC
Confidence 4444
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=1e-11 Score=140.51 Aligned_cols=99 Identities=22% Similarity=0.269 Sum_probs=70.8
Q ss_pred CccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccceeecCCC
Q 040735 599 RLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNV 678 (779)
Q Consensus 599 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 678 (779)
.|++|+|++|.++.+|. |+++++|++|+|++|.|+.+|..+++|++|++|+|++| .+..+| .+++|++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 46777777777777765 77777777777777777777777777777777777777 556676 6777777777777777
Q ss_pred cccccC--CcccCCCCCCcccCcee
Q 040735 679 HSLEEM--PKGFGKLTCLLTLSRFV 701 (779)
Q Consensus 679 ~~~~~~--p~~~~~L~~L~~L~~~~ 701 (779)
. +..+ |..++.|++|++|++..
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECTT
T ss_pred C-CCCCCCcHHHhcCCCCCEEEecC
Confidence 7 4444 66777777777775443
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=2.3e-11 Score=130.29 Aligned_cols=103 Identities=21% Similarity=0.344 Sum_probs=58.3
Q ss_pred CCCCccEEEecCCCCCccC-ccccCCCccceEeccccccccccc-ccccccccceeeccCCcchhhc-hhhhcCccccce
Q 040735 596 NLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKL-CKNMGNLMKLHH 672 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~ 672 (779)
++++|+.|+|++|.|+.++ ..|.++++|++|+|++|.++.+|. .|.++.+|++|+|++| .+..+ |..+..+++|++
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCE
Confidence 5666666666666666554 345666666666666666665544 3556666666666666 33333 444666666666
Q ss_pred eecCCCcccccCCccc----CCCCCCcccCce
Q 040735 673 LRNPNVHSLEEMPKGF----GKLTCLLTLSRF 700 (779)
Q Consensus 673 L~l~~~~~~~~~p~~~----~~L~~L~~L~~~ 700 (779)
|++++|. +..+|..+ +.+++|+.|++.
T Consensus 141 L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 141 LYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EECCSSC-CCSCCGGGTC----CTTCCEEECC
T ss_pred EECCCCc-CCeeCHHHhcCcccCCcCCEEECC
Confidence 6666665 44555543 345555555443
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=2.6e-11 Score=137.28 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=98.7
Q ss_pred cceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccce
Q 040735 569 RLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHT 648 (779)
Q Consensus 569 ~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~ 648 (779)
.|+.|.+.++. +.. +|. +.++++|+.|+|++|.++.+|..|++|++|++|+|++|.|+.+| .+++|++|++
T Consensus 442 ~L~~L~Ls~n~------l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLAHKD------LTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQE 512 (567)
T ss_dssp TCSEEECTTSC------CSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCE
T ss_pred CceEEEecCCC------CCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcE
Confidence 47888888765 333 454 66899999999999999999999999999999999999999998 8999999999
Q ss_pred eeccCCcchhhc--hhhhcCccccceeecCCCcccccCCcccC----CCCCCccc
Q 040735 649 ILLEDCRRLKKL--CKNMGNLMKLHHLRNPNVHSLEEMPKGFG----KLTCLLTL 697 (779)
Q Consensus 649 L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~~p~~~~----~L~~L~~L 697 (779)
|+|++| .+..+ |..++.|++|++|++++|. +..+|+.+. .+++|+.|
T Consensus 513 L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 513 LLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp EECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred EECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 999999 66666 8899999999999999999 666665433 35666665
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.19 E-value=3.4e-11 Score=135.60 Aligned_cols=175 Identities=17% Similarity=0.192 Sum_probs=127.5
Q ss_pred ccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLH 647 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~ 647 (779)
.+|+.|.+.++. +.. +|..++ ++|++|+|++|.++.+| +.+++|++|+|++|.|+.+|. +.+ +|+
T Consensus 59 ~~L~~L~Ls~n~------L~~-lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~ 123 (571)
T 3cvr_A 59 NQFSELQLNRLN------LSS-LPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLK 123 (571)
T ss_dssp TTCSEEECCSSC------CSC-CCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCC
T ss_pred CCccEEEeCCCC------CCc-cCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCC
Confidence 488899888765 333 555553 78999999999999998 457999999999999999998 766 999
Q ss_pred eeeccCCcchhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcc
Q 040735 648 TILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISK 727 (779)
Q Consensus 648 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~ 727 (779)
+|++++| .+..+|. .+++|++|++++|. +..+|. .+++|++|++..+.... +..+. ++|+ .|++.+
T Consensus 124 ~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~---lp~l~--~~L~-~L~Ls~ 189 (571)
T 3cvr_A 124 HLDVDNN-QLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTF---LPELP--ESLE-ALDVST 189 (571)
T ss_dssp EEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSC---CCCCC--TTCC-EEECCS
T ss_pred EEECCCC-cCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCC---cchhh--CCCC-EEECcC
Confidence 9999999 7777888 68999999999999 667887 57888888765554322 22233 6677 787776
Q ss_pred cCCCCCcchhhhccCCCC-------CCCchHHHHhcc----CCCCCCCCeEEEeecCCCC
Q 040735 728 LENVKDVGDASEAQLNTK-------PDFKIEIRVLDM----LKPHQKLEELTIAGYGGTK 776 (779)
Q Consensus 728 ~~~~~~~~~~~~~~L~~l-------~~L~~~~~~l~~----l~~~~~L~~L~l~~~~~~~ 776 (779)
+ .+..++. ... +| +.|....+.+.. +..+++|+.|+|++|+++.
T Consensus 190 N-~L~~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 190 N-LLESLPA-VPV---RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp S-CCSSCCC-CC-----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred C-CCCchhh-HHH---hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 4 3334444 222 44 666444443333 3347899999999998753
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=1.5e-11 Score=117.17 Aligned_cols=129 Identities=22% Similarity=0.308 Sum_probs=101.1
Q ss_pred hcCCCCccEEEecCCCCCccCccccCCC-ccceEecccccccccccccccccccceeeccCCcchhhchhhh-cCccccc
Q 040735 594 LLNLPRLRVFSLHGYHISKLPNEIGNLK-HLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNM-GNLMKLH 671 (779)
Q Consensus 594 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~-~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~-~~l~~L~ 671 (779)
+.++.+|+.|++++|.++.+|. +..+. +|++|++++|.++.+ +.++.+++|++|++++| .+..+|+.+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 3478899999999999998865 55555 999999999999988 67999999999999999 778888765 8999999
Q ss_pred eeecCCCcccccCCc--ccCCCCCCcccCceeeCCCCCCC--chhhhccccccceeEEcc
Q 040735 672 HLRNPNVHSLEEMPK--GFGKLTCLLTLSRFVVGKDSGSG--LRELKSLMHLQGTLQISK 727 (779)
Q Consensus 672 ~L~l~~~~~~~~~p~--~~~~L~~L~~L~~~~~~~~~~~~--~~~L~~L~~L~~~L~i~~ 727 (779)
+|++++|. ++.+|. .++.+++|+.|++..+....... ...+..+++|+ .|++..
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~-~Ld~~~ 149 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR-VLDFQK 149 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS-EETTEE
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccc-eeCCCc
Confidence 99999999 778887 78889999988765443321111 01255566666 555544
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=2.5e-11 Score=117.33 Aligned_cols=102 Identities=20% Similarity=0.327 Sum_probs=70.6
Q ss_pred CccEEEecCCCCCccCcc--ccCCCccceEeccccccccc-ccccccccccceeeccCCcchhhchh-hhcCccccceee
Q 040735 599 RLRVFSLHGYHISKLPNE--IGNLKHLRFLNLSRTNIQIL-PESINSLYNLHTILLEDCRRLKKLCK-NMGNLMKLHHLR 674 (779)
Q Consensus 599 ~L~~L~l~~n~l~~lp~~--~~~l~~L~~L~l~~n~i~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~ 674 (779)
.|+.|++++|.++.+|.. |+++++|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 677777777777776643 67777777777777777766 566777777777777777 5555544 367777777777
Q ss_pred cCCCcccccCCcccCCCCCCcccCcee
Q 040735 675 NPNVHSLEEMPKGFGKLTCLLTLSRFV 701 (779)
Q Consensus 675 l~~~~~~~~~p~~~~~L~~L~~L~~~~ 701 (779)
+++|.+.+..|..++.+++|++|++..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 777774444466677777777765433
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.18 E-value=5.5e-11 Score=127.35 Aligned_cols=135 Identities=21% Similarity=0.159 Sum_probs=99.0
Q ss_pred hhhhhcCCCCccEEEecCCCCCccCc-ccc-CCCccceEeccccccccccc-ccccccccceeeccCCcchhhchh-hhc
Q 040735 590 VLQRLLNLPRLRVFSLHGYHISKLPN-EIG-NLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKLCK-NMG 665 (779)
Q Consensus 590 ~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~-~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp~-~~~ 665 (779)
+|..+. +.++.|+|++|.++.++. .+. ++.+|++|+|++|+|+.+|+ .|.++++|++|+|++| .+..+|. .+.
T Consensus 33 iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 109 (361)
T 2xot_A 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFS 109 (361)
T ss_dssp CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT
T ss_pred cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhC
Confidence 444433 458999999999998864 455 89999999999999998864 6899999999999999 6777765 488
Q ss_pred CccccceeecCCCcccccCCcccCCCCCCcccCceeeCCCC--CCCchhhhccccccceeEEccc
Q 040735 666 NLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGKDS--GSGLRELKSLMHLQGTLQISKL 728 (779)
Q Consensus 666 ~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~--~~~~~~L~~L~~L~~~L~i~~~ 728 (779)
.+++|++|++++|.+....|..|+.+++|+.|++..+.... ...+..+.++.+|+ .|++.++
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~-~L~L~~N 173 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM-LLDLSSN 173 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC-EEECCSS
T ss_pred CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC-EEECCCC
Confidence 99999999999999443345678899999998765443321 11122225677777 7777653
No 132
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.17 E-value=2.8e-10 Score=112.67 Aligned_cols=186 Identities=13% Similarity=0.063 Sum_probs=114.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC-ceEEEEeCCCCCHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQ-IKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 263 (779)
..++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++... ...+. ..+.+..+.......+.. .
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~ 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRH-K 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHH-H
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHH-H
Confidence 468999999999999996543 23489999999999999999987321 11121 223333333333222211 1
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhhH-h-hhccc
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGVA-E-TMRAV 341 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~-~-~~~~~ 341 (779)
+..+..... ...+++.+||+||++.-.......+...+.....+..+|+||+..... . .....
T Consensus 89 ~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 89 IKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 111111100 013578999999997655455555555554445567888888765321 1 11223
Q ss_pred ccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 040735 342 STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 397 (779)
Q Consensus 342 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 397 (779)
..+.+.+++.++...++...+..... ..+ .+..+.|++.++|.|..+..+..
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGV-KIT---EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 47899999999999999876632111 111 25677888999999986555443
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=4.9e-11 Score=115.29 Aligned_cols=102 Identities=26% Similarity=0.421 Sum_probs=78.6
Q ss_pred CCccEEEecCCCCCccCccccCCCccceEeccccccccccc-ccccccccceeeccCCcchhhchh-hhcCccccceeec
Q 040735 598 PRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKLCK-NMGNLMKLHHLRN 675 (779)
Q Consensus 598 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l 675 (779)
+.|+.|+|++|.++.+|..|.++++|++|+|++|.|+.+|. .|.++++|++|+|++| .+..+|. .+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEEC
Confidence 46888888888888888888888888888888888887754 5788888888888888 5666654 5788888888888
Q ss_pred CCCcccccCCcc-cCCCCCCcccCcee
Q 040735 676 PNVHSLEEMPKG-FGKLTCLLTLSRFV 701 (779)
Q Consensus 676 ~~~~~~~~~p~~-~~~L~~L~~L~~~~ 701 (779)
++|. +..+|.. +..+++|+.|++..
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCC-CCeeChhhhhcCccccEEEeCC
Confidence 8888 5666664 67777777776543
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=6.2e-11 Score=114.58 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=100.3
Q ss_pred cEEEecCCCCCccCccccCCCccceEecccccccccccc--cccccccceeeccCCcchhhc-hhhhcCccccceeecCC
Q 040735 601 RVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPES--INSLYNLHTILLEDCRRLKKL-CKNMGNLMKLHHLRNPN 677 (779)
Q Consensus 601 ~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~--~~~L~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~ 677 (779)
+++++++|.++.+|..+.. +|++|++++|.++.+|.. ++.+++|++|+|++| .+..+ |..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 7899999999999987754 999999999999999764 899999999999999 55555 77899999999999999
Q ss_pred CcccccCCc-ccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccCC
Q 040735 678 VHSLEEMPK-GFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLEN 730 (779)
Q Consensus 678 ~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~ 730 (779)
|. +..+|. .++.+++|++|++..+.. .+.....+..+++|+ .|.+.++..
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~-~L~L~~N~l 138 (192)
T 1w8a_A 88 NK-IKEISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLT-SLNLASNPF 138 (192)
T ss_dssp CC-CCEECSSSSTTCTTCCEEECCSSCC-CEECTTSSTTCTTCC-EEECTTCCB
T ss_pred Cc-CCccCHHHhcCCCCCCEEECCCCcC-CeeCHHHhhcCCCCC-EEEeCCCCc
Confidence 99 555554 588999999998655433 223344567777787 888876543
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=1.2e-10 Score=112.56 Aligned_cols=122 Identities=21% Similarity=0.245 Sum_probs=98.8
Q ss_pred cEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchh-hhcCccccceeecCCCc
Q 040735 601 RVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCK-NMGNLMKLHHLRNPNVH 679 (779)
Q Consensus 601 ~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 679 (779)
+++++++|.++.+|..+. .+|++|+|++|.|+.+|..+.++++|++|++++| .+..+|. .|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 689999999999997764 6899999999999999999999999999999999 6667754 59999999999999999
Q ss_pred ccccCCc-ccCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEccc
Q 040735 680 SLEEMPK-GFGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKL 728 (779)
Q Consensus 680 ~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~ 728 (779)
+..+|. .|+.+++|++|++..+... ......+..+.+|+ .|.+.++
T Consensus 90 -l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~N 136 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALS-HLAIGAN 136 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCC-EEECCSS
T ss_pred -cCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCcccc-EEEeCCC
Confidence 556654 5899999999986554432 12222356677777 7777664
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.14 E-value=1.6e-11 Score=131.78 Aligned_cols=225 Identities=9% Similarity=0.089 Sum_probs=142.0
Q ss_pred cCCceeEEEEEecccccccc---cccccccc-cceEecccCcccccccccchHhhhhhcC-----CCCccEEEecCCCCC
Q 040735 541 FSQSLRHFSYIHGEYDGKKR---LKSVSDVE-RLRTFLPVNLSDYRRNYLAWSVLQRLLN-----LPRLRVFSLHGYHIS 611 (779)
Q Consensus 541 ~~~~~r~l~~~~~~~~~~~~---~~~~~~~~-~Lr~l~~~~~~~~~~~~~~~~~~~~~~~-----l~~L~~L~l~~n~l~ 611 (779)
.+..++++.+.++.+..... ...+..++ +|+.|.+.++. +....+..+.. .++|++|+|++|.++
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS------LGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC------GGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC------CCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 34557888877765432210 03455666 89999988865 33333333333 389999999999988
Q ss_pred ccC-cc----ccCC-CccceEeccccccccccc-cc----cc-ccccceeeccCCcchh-----hchhhhcCcc-cccee
Q 040735 612 KLP-NE----IGNL-KHLRFLNLSRTNIQILPE-SI----NS-LYNLHTILLEDCRRLK-----KLCKNMGNLM-KLHHL 673 (779)
Q Consensus 612 ~lp-~~----~~~l-~~L~~L~l~~n~i~~lp~-~~----~~-L~~L~~L~l~~~~~~~-----~lp~~~~~l~-~L~~L 673 (779)
..+ .. +..+ ++|++|+|++|.++..+. .+ .. ..+|++|++++| .++ .++..+..++ +|++|
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEe
Confidence 654 32 4455 899999999999986643 33 33 268999999999 554 5666677776 99999
Q ss_pred ecCCCcccccCCcc----cCCC-CCCcccCceeeCCCCCCC----chhhhcc-ccccceeEEcccCCCCCcch----hhh
Q 040735 674 RNPNVHSLEEMPKG----FGKL-TCLLTLSRFVVGKDSGSG----LRELKSL-MHLQGTLQISKLENVKDVGD----ASE 739 (779)
Q Consensus 674 ~l~~~~~~~~~p~~----~~~L-~~L~~L~~~~~~~~~~~~----~~~L~~L-~~L~~~L~i~~~~~~~~~~~----~~~ 739 (779)
++++|.+....+.. +..+ ++|++|++..+... ... ...+..+ ++|+ .|++.++. +..... ..+
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~-~~~~~~l~~~l~~~~~~L~-~L~Ls~N~-l~~~~~~~l~~~~ 249 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG-LKSYAELAYIFSSIPNHVV-SLNLCLNC-LHGPSLENLKLLK 249 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHHSCTTCC-EEECCSSC-CCCCCHHHHHHTT
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC-hhHHHHHHHHHhcCCCCce-EEECcCCC-CCcHHHHHHHHHH
Confidence 99999843333332 4445 58888876544322 222 2234343 4787 88887753 333222 233
Q ss_pred ccCCCCCCCchHHHH------------hccCCCCCCCCeEEEeecCCC
Q 040735 740 AQLNTKPDFKIEIRV------------LDMLKPHQKLEELTIAGYGGT 775 (779)
Q Consensus 740 ~~L~~l~~L~~~~~~------------l~~l~~~~~L~~L~l~~~~~~ 775 (779)
..+++|+.|....+. .+.+..+++|+.|++++|.+.
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 556777777443332 234556778999999988764
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=9.3e-13 Score=128.27 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=84.1
Q ss_pred hhcCCCCccEEEecCCCCCccCccccCCCccceEecccccccccccccccccccceeeccCCcchhhchhhhcCccccce
Q 040735 593 RLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHH 672 (779)
Q Consensus 593 ~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 672 (779)
.+.++++|++|++++|.++.+| .++++++|++|++++|.++.+|..+..+++|++|++++| .+..+| .+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 5667888888888888888887 788888888899988888888888888888888888888 677777 5888888888
Q ss_pred eecCCCcccccCCc--ccCCCCCCcccCce
Q 040735 673 LRNPNVHSLEEMPK--GFGKLTCLLTLSRF 700 (779)
Q Consensus 673 L~l~~~~~~~~~p~--~~~~L~~L~~L~~~ 700 (779)
|++++|. +..+|. .++.+++|++|++.
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEEEC
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEEec
Confidence 8888888 555554 57777788777643
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=2.2e-12 Score=125.55 Aligned_cols=128 Identities=20% Similarity=0.236 Sum_probs=106.0
Q ss_pred cccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccCccccCCCccceEeccccccccccccccc
Q 040735 563 SVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPESINS 642 (779)
Q Consensus 563 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~~~~~ 642 (779)
.+..+++|+.|.+.++. +.. +| .+.++++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+..
T Consensus 43 ~~~~l~~L~~L~ls~n~------l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN------IEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEE------ESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCCCC------Ccc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 56788999999988765 333 44 556889999999999999999988888899999999999999988 6999
Q ss_pred ccccceeeccCCcchhhchh--hhcCccccceeecCCCcccccCCcc----------cCCCCCCcccCce
Q 040735 643 LYNLHTILLEDCRRLKKLCK--NMGNLMKLHHLRNPNVHSLEEMPKG----------FGKLTCLLTLSRF 700 (779)
Q Consensus 643 L~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~----------~~~L~~L~~L~~~ 700 (779)
+++|++|++++| .+..+|. .+..+++|++|++++|...+..|.. +..+++|+.|+..
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~ 182 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCc
Confidence 999999999999 7777765 6899999999999999854444432 6677788877643
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.08 E-value=2.1e-11 Score=135.56 Aligned_cols=151 Identities=15% Similarity=0.096 Sum_probs=66.9
Q ss_pred CccceEecccccccc-----cccccccccccceeeccCCcchhhchhhhc-----CccccceeecCCCccccc-----CC
Q 040735 621 KHLRFLNLSRTNIQI-----LPESINSLYNLHTILLEDCRRLKKLCKNMG-----NLMKLHHLRNPNVHSLEE-----MP 685 (779)
Q Consensus 621 ~~L~~L~l~~n~i~~-----lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~-----~l~~L~~L~l~~~~~~~~-----~p 685 (779)
.+|++|++++|.++. ++..+..+++|++|++++|......+..+. .+++|++|++++|. ++. +|
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~ 220 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLC 220 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHH
Confidence 345555555554442 233444455555555555532111122121 23456666666655 222 34
Q ss_pred cccCCCCCCcccCceeeCCCCCCCchhh-----hccccccceeEEcccCCCCCc----chhhhccCCCCCCCchHHHHh-
Q 040735 686 KGFGKLTCLLTLSRFVVGKDSGSGLREL-----KSLMHLQGTLQISKLENVKDV----GDASEAQLNTKPDFKIEIRVL- 755 (779)
Q Consensus 686 ~~~~~L~~L~~L~~~~~~~~~~~~~~~L-----~~L~~L~~~L~i~~~~~~~~~----~~~~~~~L~~l~~L~~~~~~l- 755 (779)
..+..+++|++|++..+.. ....+..+ ..+.+|+ .|++.++ .+... ....+..+++|++|+...+.+
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~~~~~~~~L~-~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKL-GDVGMAELCPGLLHPSSRLR-TLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCC-EEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHhCCCccEEeccCCcC-ChHHHHHHHHHHhcCCCCce-EEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 4455556666665433221 11111111 1345565 6666554 22221 012234466666663222111
Q ss_pred --------ccC-CCCCCCCeEEEeecCCC
Q 040735 756 --------DML-KPHQKLEELTIAGYGGT 775 (779)
Q Consensus 756 --------~~l-~~~~~L~~L~l~~~~~~ 775 (779)
..+ .+.++|++|+|++|.++
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 111 23457888888877654
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=1.9e-10 Score=109.01 Aligned_cols=81 Identities=25% Similarity=0.365 Sum_probs=45.3
Q ss_pred CCccEEEecCCCCCcc-CccccCCCccceEecccccccccccc-cccccccceeeccCCcchhhchhh-hcCccccceee
Q 040735 598 PRLRVFSLHGYHISKL-PNEIGNLKHLRFLNLSRTNIQILPES-INSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLR 674 (779)
Q Consensus 598 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~ 674 (779)
+.|++|+|++|.++.+ |..|+++++|++|+|++|+|+.+|.. |.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEE
Confidence 4555566666555554 34455555566666666555555544 355555666666555 44455543 55555556665
Q ss_pred cCCCc
Q 040735 675 NPNVH 679 (779)
Q Consensus 675 l~~~~ 679 (779)
+++|.
T Consensus 112 L~~N~ 116 (174)
T 2r9u_A 112 LYNNP 116 (174)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 55555
No 141
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.07 E-value=1.4e-11 Score=136.86 Aligned_cols=224 Identities=17% Similarity=0.108 Sum_probs=119.8
Q ss_pred CceeEEEEEeccccccc--c-cccccccccceEecccCcccccccccchHhhhhhc-CCC----CccEEEecCCCCC---
Q 040735 543 QSLRHFSYIHGEYDGKK--R-LKSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLP----RLRVFSLHGYHIS--- 611 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~--~-~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~----~L~~L~l~~n~l~--- 611 (779)
..++.+.+..+...... . ...+..+++|+.|.+.++. +....+..++ .++ +|++|+|++|.++
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE------LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC------CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc------CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 35666666655432110 1 1224455677777776654 3343344444 444 5777777777776
Q ss_pred --ccCccccCCCccceEeccccccccc-ccccc-----cccccceeeccCCcchh----hchhhhcCccccceeecCCCc
Q 040735 612 --KLPNEIGNLKHLRFLNLSRTNIQIL-PESIN-----SLYNLHTILLEDCRRLK----KLCKNMGNLMKLHHLRNPNVH 679 (779)
Q Consensus 612 --~lp~~~~~l~~L~~L~l~~n~i~~l-p~~~~-----~L~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~ 679 (779)
.+|..+.++++|++|+|++|.++.. +..+. .+.+|++|++++|.... .++..+..+++|++|++++|.
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 3466677777777777777776632 22222 24567777777773222 345556667777777777776
Q ss_pred ccccCCcccC-----CCCCCcccCceeeCCCCCC---CchhhhccccccceeEEcccCCCCCcc-----hhhhccCCCCC
Q 040735 680 SLEEMPKGFG-----KLTCLLTLSRFVVGKDSGS---GLRELKSLMHLQGTLQISKLENVKDVG-----DASEAQLNTKP 746 (779)
Q Consensus 680 ~~~~~p~~~~-----~L~~L~~L~~~~~~~~~~~---~~~~L~~L~~L~~~L~i~~~~~~~~~~-----~~~~~~L~~l~ 746 (779)
.....+..+. .+++|++|++..+...... ....+..+++|+ .|++.++. +.... ......+++|+
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~ 259 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR-ELALGSNK-LGDVGMAELCPGLLHPSSRLR 259 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC-EEECCSSB-CHHHHHHHHHHHHTSTTCCCC
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc-EEeccCCc-CChHHHHHHHHHHhcCCCCce
Confidence 3222122222 2456777665443321110 133355566777 77776542 21111 22223466666
Q ss_pred CCchHHH---------HhccCCCCCCCCeEEEeecCC
Q 040735 747 DFKIEIR---------VLDMLKPHQKLEELTIAGYGG 774 (779)
Q Consensus 747 ~L~~~~~---------~l~~l~~~~~L~~L~l~~~~~ 774 (779)
+|....+ ....+..+++|++|+|++|.+
T Consensus 260 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 6633222 223344467888888887755
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=2.5e-10 Score=107.86 Aligned_cols=95 Identities=23% Similarity=0.373 Sum_probs=50.1
Q ss_pred cEEEecCCCCCccCccccCCCccceEeccccccccc-ccccccccccceeeccCCcchhhchhh-hcCccccceeecCCC
Q 040735 601 RVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQIL-PESINSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNV 678 (779)
Q Consensus 601 ~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~ 678 (779)
+.+++++|.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|.. +..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 455555555555554442 4555555555555555 334555555555555555 44444443 355555555555555
Q ss_pred cccccCCcc-cCCCCCCcccCc
Q 040735 679 HSLEEMPKG-FGKLTCLLTLSR 699 (779)
Q Consensus 679 ~~~~~~p~~-~~~L~~L~~L~~ 699 (779)
. +..+|.. ++++++|++|++
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEEC
T ss_pred c-cCEeCHHHhcCCCCCCEEEe
Confidence 5 4444443 555555555543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=1.9e-10 Score=109.12 Aligned_cols=100 Identities=21% Similarity=0.375 Sum_probs=87.6
Q ss_pred ccEEEecCCCCCccCccccCCCccceEeccccccccc-ccccccccccceeeccCCcchhhchhh-hcCccccceeecCC
Q 040735 600 LRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQIL-PESINSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPN 677 (779)
Q Consensus 600 L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~ 677 (779)
-+.+++++|.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|.. +.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 3789999999999998775 8999999999999988 567899999999999999 88888876 58999999999999
Q ss_pred CcccccCCcc-cCCCCCCcccCceeeC
Q 040735 678 VHSLEEMPKG-FGKLTCLLTLSRFVVG 703 (779)
Q Consensus 678 ~~~~~~~p~~-~~~L~~L~~L~~~~~~ 703 (779)
|. +..+|.. ++.+++|++|++..+.
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCCC
Confidence 99 7778876 8899999998765543
No 144
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.05 E-value=1.8e-10 Score=122.86 Aligned_cols=200 Identities=15% Similarity=0.116 Sum_probs=127.6
Q ss_pred ccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCC-ccC-ccccCCCccce-Eecccccccccc-ccccc
Q 040735 568 ERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHIS-KLP-NEIGNLKHLRF-LNLSRTNIQILP-ESINS 642 (779)
Q Consensus 568 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~-~lp-~~~~~l~~L~~-L~l~~n~i~~lp-~~~~~ 642 (779)
.+++.|.+.++. + ..+|+..+ ++++|++|+|++|.+. .+| ..|.++++|+. +.+++|+++.+| ..|..
T Consensus 30 ~~l~~L~Ls~N~------i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~ 102 (350)
T 4ay9_X 30 RNAIELRFVLTK------L-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102 (350)
T ss_dssp TTCSEEEEESCC------C-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCC
T ss_pred CCCCEEEccCCc------C-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhh
Confidence 467777777654 3 24555544 7888888888888875 455 45677777664 556667888774 45778
Q ss_pred ccccceeeccCCcchhhchh-hhcCccccceeecCCCcccccCCcc-cCCCC-CCcccCceeeCCCCCCCchhhhccccc
Q 040735 643 LYNLHTILLEDCRRLKKLCK-NMGNLMKLHHLRNPNVHSLEEMPKG-FGKLT-CLLTLSRFVVGKDSGSGLRELKSLMHL 719 (779)
Q Consensus 643 L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~-~L~~L~~~~~~~~~~~~~~~L~~L~~L 719 (779)
+++|++|++++| .+..+|. .+....++..|++.++..+..+|.. +..+. .|+.|.+..+... ......-...+|
T Consensus 103 l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~L 179 (350)
T 4ay9_X 103 LPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQL 179 (350)
T ss_dssp CTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--EECTTSSTTEEE
T ss_pred cccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc--CCChhhccccch
Confidence 888888888887 6666654 3456667777877665546666653 44443 4666544332211 111112233455
Q ss_pred cceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhccCCC--CCCCCeEEEeec-CCCCCC
Q 040735 720 QGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDMLKP--HQKLEELTIAGY-GGTKFP 778 (779)
Q Consensus 720 ~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~l~~--~~~L~~L~l~~~-~~~~~P 778 (779)
. .|.+.+...+..++...+..+++|+.|+...+.+..+.+ +.+|++|.+.++ .++.+|
T Consensus 180 ~-~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 180 D-ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp E-EEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred h-HHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCC
Confidence 5 677766666677777777888888888777777766643 567888887664 445566
No 145
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.03 E-value=5.6e-11 Score=127.44 Aligned_cols=200 Identities=12% Similarity=0.065 Sum_probs=130.2
Q ss_pred ccccceEecccCcccccccccchHhh----hhhcCCC-CccEEEecCCCCCcc-CccccCC-----CccceEeccccccc
Q 040735 566 DVERLRTFLPVNLSDYRRNYLAWSVL----QRLLNLP-RLRVFSLHGYHISKL-PNEIGNL-----KHLRFLNLSRTNIQ 634 (779)
Q Consensus 566 ~~~~Lr~l~~~~~~~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~n~l~~l-p~~~~~l-----~~L~~L~l~~n~i~ 634 (779)
..++|+.|.+.++. +....+ ..+.+++ +|+.|+|++|.++.. +..+..+ ++|++|+|++|.++
T Consensus 20 ~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 20 IPHGVTSLDLSLNN------LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp SCTTCCEEECTTSC------GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred CCCCceEEEccCCC------CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 34559999998865 333222 4455788 899999999999865 4556554 89999999999998
Q ss_pred cc-cccc----ccc-cccceeeccCCcchhhchh-h----hcC-ccccceeecCCCcccc----cCCcccCCCC-CCccc
Q 040735 635 IL-PESI----NSL-YNLHTILLEDCRRLKKLCK-N----MGN-LMKLHHLRNPNVHSLE----EMPKGFGKLT-CLLTL 697 (779)
Q Consensus 635 ~l-p~~~----~~L-~~L~~L~l~~~~~~~~lp~-~----~~~-l~~L~~L~l~~~~~~~----~~p~~~~~L~-~L~~L 697 (779)
.. +..+ ..+ ++|++|++++| .+...+. . +.. .++|++|++++|.+.. .++..+..++ +|++|
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 55 4433 444 89999999999 5555543 3 334 3699999999998432 3444455665 89988
Q ss_pred CceeeCCCCCCCchh----hhcc-ccccceeEEcccCCCCC-----cchhhhccCCCCCCCchHHHHh---------ccC
Q 040735 698 SRFVVGKDSGSGLRE----LKSL-MHLQGTLQISKLENVKD-----VGDASEAQLNTKPDFKIEIRVL---------DML 758 (779)
Q Consensus 698 ~~~~~~~~~~~~~~~----L~~L-~~L~~~L~i~~~~~~~~-----~~~~~~~~L~~l~~L~~~~~~l---------~~l 758 (779)
++..+.. ....... +..+ ++|+ .|++.++. +.. +........++|+.|+...+.+ ..+
T Consensus 173 ~Ls~n~l-~~~~~~~l~~~l~~~~~~L~-~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 173 NLRGNNL-ASKNCAELAKFLASIPASVT-SLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp ECTTSCG-GGSCHHHHHHHHHTSCTTCC-EEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred eecCCCC-chhhHHHHHHHHHhCCCCCC-EEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 7655433 2223322 3444 5788 88887653 222 1222222235787774433332 334
Q ss_pred CCCCCCCeEEEeecCCC
Q 040735 759 KPHQKLEELTIAGYGGT 775 (779)
Q Consensus 759 ~~~~~L~~L~l~~~~~~ 775 (779)
..+++|+.|+|++|.+.
T Consensus 250 ~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp TTTTTCSEEEEEHHHHT
T ss_pred hcCCCccEEEeccCCcc
Confidence 66789999999998743
No 146
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.00 E-value=5.3e-10 Score=117.82 Aligned_cols=268 Identities=15% Similarity=0.095 Sum_probs=144.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
..++|++..++.+..++..... .......+.|+|++|+|||++|+.+++. .... ..++.........
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~------- 78 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPG------- 78 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChH-------
Confidence 4699999999998888753210 0112356889999999999999999873 2222 2333332222211
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCC------------------CCCcEEE
Q 040735 265 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAG------------------AFGSKIV 326 (779)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~------------------~~gs~Ii 326 (779)
.+...+...+ .++.+|+||++..-.......+...+... ..+..+|
T Consensus 79 ---------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 79 ---------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ---------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ---------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 1111111111 34568899999654433333332221111 0235666
Q ss_pred EEcCchh-hHhhh-cc-cccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhhcCC-
Q 040735 327 VTHRNQG-VAETM-RA-VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGK- 402 (779)
Q Consensus 327 vTtR~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~- 402 (779)
.||.... +...+ .. ...+.+.+++.++...++...+..... ..+ .+....|++.|+|.|-.+..+...+...
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6666442 11111 11 247889999999999998877643221 122 3567889999999998887766544321
Q ss_pred -------CChhHHHHHHhhhhcccccCCCCchHHHHHhhcCCChhhHhHhhhhc-cCCCC----------CccCHHHHHH
Q 040735 403 -------DDLNDWEFVLNANIWDLQEDKCDIVPALRVSYHFLPPQLKQCFAYFS-LFPKD----------YDFQEEEIIL 464 (779)
Q Consensus 403 -------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~ls-~fp~~----------~~i~~~~li~ 464 (779)
-+.+....++... ...+..++...+..+..+. .|..+ ..+++..+.+
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEE 283 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHH
Confidence 1233333333221 1122334444444443332 22111 1233333322
Q ss_pred ----HHHHcCCccCCCCCCCHHHHHHHHHH-HHhhCccccc
Q 040735 465 ----LWTAEGFLDQEYNGRKMEDLGREFVR-ELHSRSLVQQ 500 (779)
Q Consensus 465 ----~W~aeg~i~~~~~~~~~e~~~~~~l~-~L~~~~ll~~ 500 (779)
+-+..|++.....+....+.|.+||+ ++.+|+|||+
T Consensus 284 ~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 284 VHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 34667888765566677888999997 8999999885
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.00 E-value=5.8e-10 Score=106.14 Aligned_cols=102 Identities=26% Similarity=0.443 Sum_probs=69.2
Q ss_pred CCccEEEecCCCCCccCc-cccCCCccceEecccccccccccc-cccccccceeeccCCcchhhchhh-hcCccccceee
Q 040735 598 PRLRVFSLHGYHISKLPN-EIGNLKHLRFLNLSRTNIQILPES-INSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLR 674 (779)
Q Consensus 598 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~ 674 (779)
++|+.|++++|.++.+|. .|+++++|++|++++|.++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEE
Confidence 467777777777776654 356777777777777777776554 567777777777777 55555554 56777777777
Q ss_pred cCCCcccccCCcc-cCCCCCCcccCcee
Q 040735 675 NPNVHSLEEMPKG-FGKLTCLLTLSRFV 701 (779)
Q Consensus 675 l~~~~~~~~~p~~-~~~L~~L~~L~~~~ 701 (779)
+++|. +..+|.. +..+++|++|++..
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred CcCCc-ceEeCHHHhcCCcccCEEEecC
Confidence 77776 5566655 46677777765443
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.99 E-value=8.1e-10 Score=105.15 Aligned_cols=108 Identities=21% Similarity=0.253 Sum_probs=84.5
Q ss_pred cccceEecccCcccccccccchHhhhhh-cCCCCccEEEecCCCCCccCc-cccCCCccceEecccccccccccc-cccc
Q 040735 567 VERLRTFLPVNLSDYRRNYLAWSVLQRL-LNLPRLRVFSLHGYHISKLPN-EIGNLKHLRFLNLSRTNIQILPES-INSL 643 (779)
Q Consensus 567 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~i~~lp~~-~~~L 643 (779)
.++|+.|.+.++. +. .++... .++++|++|++++|.++.+|. .|+++++|++|+|++|.++.+|.. +..+
T Consensus 27 ~~~l~~L~l~~n~------l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESNK------LQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99 (177)
T ss_dssp CTTCSEEECCSSC------CC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCcEEEeCCCc------cc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCC
Confidence 3678888887765 33 334444 488899999999999988874 468899999999999999988765 6788
Q ss_pred cccceeeccCCcchhhchhh-hcCccccceeecCCCcccc
Q 040735 644 YNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVHSLE 682 (779)
Q Consensus 644 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~ 682 (779)
++|++|++++| .+..+|.. +..+++|++|++++|....
T Consensus 100 ~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 100 TQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999999988 67777776 5778999999999988443
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=4e-09 Score=110.97 Aligned_cols=185 Identities=17% Similarity=0.216 Sum_probs=113.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC-ceEEEEeCCCCCHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQ-IKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 263 (779)
..++|++..++.+..++.... .+.+.|+|++|+|||++|+.+++... ...+. ..+++..+..... ...+.+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGI-DVVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSH-HHHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccCh-HHHHHH
Confidence 468999999999999986533 23388999999999999999987321 11111 2233333332222 122222
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHh-CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchh-hHhh-hcc
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLKKQL-SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQG-VAET-MRA 340 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~-~~~ 340 (779)
+..+..... .+ .+++.++|+||++.-....++.+...+.....++.+|+||+... +... ...
T Consensus 93 ~~~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 93 IKHFAQKKL---------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHBCC---------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHhccc---------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 222211000 01 35689999999976555556666555544445678888886643 2111 122
Q ss_pred cccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHH-HHHHH
Q 040735 341 VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLA-AKTLG 396 (779)
Q Consensus 341 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLa-i~~~~ 396 (779)
...+.+.+++.++..+++...+..... ..+ .+....|++.|+|.|.. +..+.
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDV-KYT---NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 357899999999999999876532111 111 25577899999999954 44443
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=1e-09 Score=103.67 Aligned_cols=88 Identities=27% Similarity=0.391 Sum_probs=77.0
Q ss_pred hhhhhcCCCCccEEEecCCCCCcc-CccccCCCccceEecccccccccccc-cccccccceeeccCCcchhhchhh-hcC
Q 040735 590 VLQRLLNLPRLRVFSLHGYHISKL-PNEIGNLKHLRFLNLSRTNIQILPES-INSLYNLHTILLEDCRRLKKLCKN-MGN 666 (779)
Q Consensus 590 ~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~L~~L~l~~~~~~~~lp~~-~~~ 666 (779)
+|..+ .+.|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|+. |.++++|++|+|++| .+..+|.. +.+
T Consensus 24 ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~ 100 (170)
T 3g39_A 24 VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDN 100 (170)
T ss_dssp CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcC
Confidence 44444 37899999999999988 57799999999999999999999876 589999999999999 77788775 889
Q ss_pred ccccceeecCCCcc
Q 040735 667 LMKLHHLRNPNVHS 680 (779)
Q Consensus 667 l~~L~~L~l~~~~~ 680 (779)
+++|++|++++|+.
T Consensus 101 l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 101 LKSLTHIWLLNNPW 114 (170)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CCCCCEEEeCCCCC
Confidence 99999999999983
No 151
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.85 E-value=1.6e-09 Score=124.28 Aligned_cols=216 Identities=13% Similarity=0.077 Sum_probs=115.8
Q ss_pred ceeEEEEEecccccccccccccc-cc-cceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCc-----cCc
Q 040735 544 SLRHFSYIHGEYDGKKRLKSVSD-VE-RLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISK-----LPN 615 (779)
Q Consensus 544 ~~r~l~~~~~~~~~~~~~~~~~~-~~-~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~-----lp~ 615 (779)
.++++.+..+.... ..+..+.. ++ +|+.|.+.++.. +.......+. ++++|++|+|++|.++. ++.
T Consensus 113 ~L~~L~L~~~~i~~-~~~~~l~~~~~~~L~~L~L~~~~~-----~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 113 QLKSVHFRRMIVSD-LDLDRLAKARADDLETLKLDKCSG-----FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp TCCEEEEESCBCCH-HHHHHHHHHHGGGCCEEEEESCEE-----EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred CCCeEEeeccEecH-HHHHHHHHhccccCcEEECcCCCC-----cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 45666665543221 11222333 23 377777766541 2222233333 67788888888886643 223
Q ss_pred cccCCCccceEeccccccc-----ccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCccc---ccCCcc
Q 040735 616 EIGNLKHLRFLNLSRTNIQ-----ILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSL---EEMPKG 687 (779)
Q Consensus 616 ~~~~l~~L~~L~l~~n~i~-----~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~---~~~p~~ 687 (779)
.+.++++|++|++++|.++ .++..+.++++|++|++++| .+..+|..+.++++|++|+++.+... ...+..
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 3456777888888877765 34555667778888888887 56667777777788888877653311 123334
Q ss_pred cCCCCCCcccCceeeCCCCCCCchhhhccccccceeEEcccCCCCCcc-hhhhccCCCCCCCchH----HHHhccC-CCC
Q 040735 688 FGKLTCLLTLSRFVVGKDSGSGLRELKSLMHLQGTLQISKLENVKDVG-DASEAQLNTKPDFKIE----IRVLDML-KPH 761 (779)
Q Consensus 688 ~~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~-~~~~~~L~~l~~L~~~----~~~l~~l-~~~ 761 (779)
++.+++|+.|.+..+. .......+..+++|+ .|++.++. +.... ......+++|+.|... ...+..+ ..+
T Consensus 266 l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~-~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMG--PNEMPILFPFAAQIR-KLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341 (592)
T ss_dssp CCCCTTCCEEEETTCC--TTTGGGGGGGGGGCC-EEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred hhccccccccCccccc--hhHHHHHHhhcCCCc-EEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhC
Confidence 5566666665432221 112222344566666 67776544 22111 1223556666666321 1112211 234
Q ss_pred CCCCeEEEe
Q 040735 762 QKLEELTIA 770 (779)
Q Consensus 762 ~~L~~L~l~ 770 (779)
++|++|+|+
T Consensus 342 ~~L~~L~L~ 350 (592)
T 3ogk_B 342 KQLKRLRIE 350 (592)
T ss_dssp TTCCEEEEE
T ss_pred CCCCEEEee
Confidence 566666666
No 152
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.84 E-value=4.1e-10 Score=129.36 Aligned_cols=172 Identities=13% Similarity=-0.027 Sum_probs=93.2
Q ss_pred CCCCccEEEecCCCCCccCccccCCCccceEecccccc----cccccccccccccceeeccCCcchhhchhhhcCccccc
Q 040735 596 NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNI----QILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLH 671 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i----~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 671 (779)
++++|+.|++++|.+..+|..+.++++|++|+++++.. ...+..+..+++|+.|+++++ ....+|..+..+++|+
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIR 296 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCC
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCc
Confidence 34444444444444444444444444444444442211 122233444455555555554 4556677777888888
Q ss_pred eeecCCCccccc-CCcccCCCCCCcccCceeeCCCCCCCchh-hhccccccceeEEcc----------cCCCCCc-chhh
Q 040735 672 HLRNPNVHSLEE-MPKGFGKLTCLLTLSRFVVGKDSGSGLRE-LKSLMHLQGTLQISK----------LENVKDV-GDAS 738 (779)
Q Consensus 672 ~L~l~~~~~~~~-~p~~~~~L~~L~~L~~~~~~~~~~~~~~~-L~~L~~L~~~L~i~~----------~~~~~~~-~~~~ 738 (779)
+|++++|..... ++..++.+++|++|.+. +......+.. ...+++|+ .|.+.+ ...+... ....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~~~~L~-~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLK-RLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHHCTTCC-EEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEecc--CccCHHHHHHHHHhCCCCC-EEEeecCccccccccccCccCHHHHHHH
Confidence 998888872222 22235778888888765 1111222332 24567777 788874 3333321 1223
Q ss_pred hccCCCCCCCch-----HHHHhccCCC-CCCCCeEEEee
Q 040735 739 EAQLNTKPDFKI-----EIRVLDMLKP-HQKLEELTIAG 771 (779)
Q Consensus 739 ~~~L~~l~~L~~-----~~~~l~~l~~-~~~L~~L~l~~ 771 (779)
...+++|++|.. ....+..+.. +++|++|+|++
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEee
Confidence 455788888843 3444444443 78999999974
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=7.1e-09 Score=110.26 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=67.2
Q ss_pred HhhhhhcCCCCccEEEecC-CCCCccC-ccccCCCccceEeccccccccccc-ccccccccceeeccCCcchhhchhhhc
Q 040735 589 SVLQRLLNLPRLRVFSLHG-YHISKLP-NEIGNLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKLCKNMG 665 (779)
Q Consensus 589 ~~~~~~~~l~~L~~L~l~~-n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp~~~~ 665 (779)
.+|. +..+++|+.|+|++ |.|+.+| ..|++|.+|++|+|++|+|+.+|+ .|.+|++|+.|+|++| .+..+|..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHc
Confidence 3566 66778888888885 8888776 567888888888888888887654 5688888888888888 6777776644
Q ss_pred CccccceeecCCCc
Q 040735 666 NLMKLHHLRNPNVH 679 (779)
Q Consensus 666 ~l~~L~~L~l~~~~ 679 (779)
...+|++|++.+|.
T Consensus 101 ~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCCEEECCSSC
T ss_pred ccCCceEEEeeCCC
Confidence 44448888888887
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=2.7e-08 Score=104.77 Aligned_cols=188 Identities=13% Similarity=0.082 Sum_probs=113.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC-ceEEEEeCCCCCHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQ-IKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 263 (779)
.+++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++... ...+. ..+.+..+..... ...+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI-NVIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-HTTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-HHHHHH
Confidence 358999999999999986543 23489999999999999999987321 11111 1222332211110 011111
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhh-Hhhh-ccc
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGV-AETM-RAV 341 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v-~~~~-~~~ 341 (779)
+....... ....+++.++|+||++.-....+..+...+.....++++|+||....- ...+ ...
T Consensus 97 ~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 97 VKEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 11110000 001256889999999765555666666555444556788888876431 1111 122
Q ss_pred ccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhhh
Q 040735 342 STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 399 (779)
Q Consensus 342 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l 399 (779)
..+.+.+++.++...++...+..... . -..+....|++.++|.|..+..+...+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGL-E---LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC-E---ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 47889999999999999876643221 1 123567788999999998766554433
No 155
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.77 E-value=1.4e-09 Score=124.89 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=99.8
Q ss_pred CceeEEEEEeccccccccccccc-ccccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCc-----cCc
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSVS-DVERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISK-----LPN 615 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~~-~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~-----lp~ 615 (779)
..++++.+.++.... ..+..+. .+++|+.|.+.++.. +....+..+. ++++|++|+|++|.++. ++.
T Consensus 105 ~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~-----~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTD-DCLELIAKSFKNFKVLVLSSCEG-----FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp TTCCEEEEESCBCCH-HHHHHHHHHCTTCCEEEEESCEE-----EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred CCCCeEEeeCcEEcH-HHHHHHHHhCCCCcEEeCCCcCC-----CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 356777776654322 1223333 578999998887642 3344344555 78999999999998664 233
Q ss_pred cccCCCccceEeccccc--cc--ccccccccccccceeeccCCcchhhchhhhcCccccceeecCCCcc------cccCC
Q 040735 616 EIGNLKHLRFLNLSRTN--IQ--ILPESINSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHS------LEEMP 685 (779)
Q Consensus 616 ~~~~l~~L~~L~l~~n~--i~--~lp~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~------~~~~p 685 (779)
....+++|++|++++|. +. .++.-+.++++|++|++++|..+..+|..+.++++|++|+++.+.. +..++
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 33467799999999886 32 2333345678999999999877777888888899999998765531 22344
Q ss_pred cccCCCCCCccc
Q 040735 686 KGFGKLTCLLTL 697 (779)
Q Consensus 686 ~~~~~L~~L~~L 697 (779)
..++++++|+.|
T Consensus 259 ~~l~~~~~L~~L 270 (594)
T 2p1m_B 259 VALSGCKELRCL 270 (594)
T ss_dssp HHHHTCTTCCEE
T ss_pred HHHhcCCCcccc
Confidence 456666666666
No 156
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.67 E-value=2.9e-09 Score=122.26 Aligned_cols=199 Identities=16% Similarity=0.101 Sum_probs=128.9
Q ss_pred cccccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCC-CCCc--cCccccCCCccceEecccccccc-----
Q 040735 565 SDVERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGY-HISK--LPNEIGNLKHLRFLNLSRTNIQI----- 635 (779)
Q Consensus 565 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~--lp~~~~~l~~L~~L~l~~n~i~~----- 635 (779)
..+++|+.|.+.++. ++...+..+. .+++|+.|+|++| .++. ++..+.++++|++|+|++|.++.
T Consensus 102 ~~~~~L~~L~L~~~~------~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV------VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHCTTCCEEEEESCB------CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred HhCCCCCeEEeeCcE------EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 367789999888764 5566666676 7899999999999 5554 55555689999999999998774
Q ss_pred cccccccccccceeeccCCc-c--hhhchhhhcCccccceeecCCCcccccCCcccCCCCCCcccCceeeCC--------
Q 040735 636 LPESINSLYNLHTILLEDCR-R--LKKLCKNMGNLMKLHHLRNPNVHSLEEMPKGFGKLTCLLTLSRFVVGK-------- 704 (779)
Q Consensus 636 lp~~~~~L~~L~~L~l~~~~-~--~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~-------- 704 (779)
++.....+++|++|++++|. . ...++.-+.++++|++|++++|..++.+|..++++++|+.|.+..+..
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 33334477899999999984 1 122333345679999999999965667887788889999886432211
Q ss_pred -----------------CC---CCCchh-hhccccccceeEEcccCCCCCc-chhhhccCCCCCCCchHH----HHhccC
Q 040735 705 -----------------DS---GSGLRE-LKSLMHLQGTLQISKLENVKDV-GDASEAQLNTKPDFKIEI----RVLDML 758 (779)
Q Consensus 705 -----------------~~---~~~~~~-L~~L~~L~~~L~i~~~~~~~~~-~~~~~~~L~~l~~L~~~~----~~l~~l 758 (779)
.. ...+.. +..+++|+ .|++..+. +... .......+++|+.|.... ..+..+
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~-~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l 333 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLT-TLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL 333 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCC-EEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCC-EEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHH
Confidence 00 001111 12456666 77776654 3211 112234667777773322 122222
Q ss_pred C-CCCCCCeEEEee
Q 040735 759 K-PHQKLEELTIAG 771 (779)
Q Consensus 759 ~-~~~~L~~L~l~~ 771 (779)
. .+++|++|+|.+
T Consensus 334 ~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 334 ASTCKDLRELRVFP 347 (594)
T ss_dssp HHHCTTCCEEEEEC
T ss_pred HHhCCCCCEEEEec
Confidence 1 367888888854
No 157
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.65 E-value=1.9e-07 Score=100.24 Aligned_cols=196 Identities=18% Similarity=0.144 Sum_probs=112.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|++..++.+...+.... ....+.|+|++|+||||+|+.+.+.......+. ............+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 358999999999999986543 234788999999999999999876322111110 00000000001111
Q ss_pred HH-------hhcCCCCCcccHHHHHHHHHHH-hCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchh-hH
Q 040735 265 NS-------IASDQCTDKDDLNLLQEKLKKQ-LSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQG-VA 335 (779)
Q Consensus 265 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~ 335 (779)
.. +.........+...+.+.+... ..+++.++|+||+..-+....+.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000000122233333222111 135678999999976555556666555544445667777776442 21
Q ss_pred hh-hcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 336 ET-MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 336 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
.. ......+.+.+++.++...++...+..... .. ..+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 11 122357899999999999998875532111 11 12557789999999998876654
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=2.9e-08 Score=105.47 Aligned_cols=85 Identities=20% Similarity=0.176 Sum_probs=45.8
Q ss_pred ccccccceEecccC-cccccccccchHhhhhhcCCCCccEEEecCCCCCccC-ccccCCCccceEecccccccccccccc
Q 040735 564 VSDVERLRTFLPVN-LSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPESIN 641 (779)
Q Consensus 564 ~~~~~~Lr~l~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~~~~ 641 (779)
+..+.+|+.|.+.+ +. +....+..+.++++|+.|+|++|.|+.+| ..|++|++|++|+|++|+|+.+|+.+.
T Consensus 27 l~~~~~L~~L~l~~~n~------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 27 LPGAENLTELYIENQQH------LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp SCSCSCCSEEECCSCSS------CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred CCCCCCeeEEEccCCCC------CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 45555566666553 32 22222223336666666666666666543 345666666666666666666655443
Q ss_pred cccccceeeccCC
Q 040735 642 SLYNLHTILLEDC 654 (779)
Q Consensus 642 ~L~~L~~L~l~~~ 654 (779)
....|+.|+|.+|
T Consensus 101 ~~~~L~~l~l~~N 113 (347)
T 2ifg_A 101 QGLSLQELVLSGN 113 (347)
T ss_dssp CSCCCCEEECCSS
T ss_pred ccCCceEEEeeCC
Confidence 3333666666665
No 159
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.63 E-value=2.9e-07 Score=96.38 Aligned_cols=182 Identities=13% Similarity=0.098 Sum_probs=111.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC-ceEEEEeCCCCCHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQ-IKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 263 (779)
.+++|++..++.+.+++... ....+.|+|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 45899999999998887543 223489999999999999999886321 11111 1223333321110
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHH--h-CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchh-hHhh-h
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLKKQ--L-SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQG-VAET-M 338 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~-~ 338 (779)
............. + .+++.++|+|++..-.....+.+...+.....++.+|+||.... +... .
T Consensus 83 ------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 83 ------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp ------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred ------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 1111111111111 1 25688999999976555556667666655556778888876543 2111 1
Q ss_pred cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 339 RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 339 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
.....+.+.+++.++...++...+..... .. ..+....|++.++|.+..+....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i---~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGV-KI---TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCC-CB---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 22357899999999999998876643221 11 23556788899999997655443
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.62 E-value=2e-07 Score=95.91 Aligned_cols=172 Identities=12% Similarity=0.029 Sum_probs=103.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc---ccC--ceEEEEeCCCCCHHHHH
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQR---HFQ--IKSWTCVFEDFDVFRVS 260 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~F~--~~~wv~~~~~~~~~~~~ 260 (779)
.+.||+++++.|...|...-. .+....+.|+|++|+|||++|+.+++...... ... ..+.+++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 378999999999988865321 23457889999999999999999997532111 111 34667777778888999
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHH--hCCCeEEEEEeCCcCCChhhhhhhcccCCC-CCCCc--EEEEEcCchh--
Q 040735 261 KLILNSIASDQCTDKDDLNLLQEKLKKQ--LSGKKFLVVLDDVWNENYNSWRALSCPFGA-GAFGS--KIVVTHRNQG-- 333 (779)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs--~IivTtR~~~-- 333 (779)
..|++++...........+.+...+... -.+++++++||++..-. .-+.+...+.+ ....+ .||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999654321222333333333322 24678999999995432 11222222210 01122 2333343321
Q ss_pred ---hH----hhhcccccccCCCCChHHHHHHHHHhh
Q 040735 334 ---VA----ETMRAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 334 ---v~----~~~~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
+. ..+. ...+.+.|.+.++-.+++..++
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11 1211 2468899999999999998775
No 161
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=1.9e-08 Score=106.12 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=61.1
Q ss_pred ceeEEEEEecccccccccccccc-cccceEecccCcccc--cc--cccc---------hHhhhhhc-C--------CCCc
Q 040735 544 SLRHFSYIHGEYDGKKRLKSVSD-VERLRTFLPVNLSDY--RR--NYLA---------WSVLQRLL-N--------LPRL 600 (779)
Q Consensus 544 ~~r~l~~~~~~~~~~~~~~~~~~-~~~Lr~l~~~~~~~~--~~--~~~~---------~~~~~~~~-~--------l~~L 600 (779)
.+.++.+.+.- . ...+..+.. +++|+.|.+.++.-. .. ..+. ..+|...| + +++|
T Consensus 26 ~l~~L~l~g~i-~-~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 26 SITHLTLTGKL-N-AEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HCSEEEEEEEE-C-HHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred ceeEEEEeccc-c-HHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 45666665431 1 112233333 677888877665421 00 0011 13455555 6 7888
Q ss_pred cEEEecCCCCCccC-ccccCCCccceEeccccccccccc-ccccccccceeeccC
Q 040735 601 RVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLED 653 (779)
Q Consensus 601 ~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~ 653 (779)
+.|+|.+ .++.++ ..|.++.+|+.|++++|.+..+++ .|..+.++..+.+..
T Consensus 104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 8888887 777775 457888888888888887766643 355555555555443
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.46 E-value=5.6e-07 Score=86.28 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..++||+.+++++.+++... ..+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998653 2356889999999999999999874
No 163
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=1.9e-06 Score=91.64 Aligned_cols=196 Identities=13% Similarity=0.070 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC-ceEEEEeCCCCCHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQ-IKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 263 (779)
..++|++..++.+..++.... ...+.|+|++|+||||+|+.+.+.......+. ....+..+...... .+...
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS-IVREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH-HHTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH-HHHHH
Confidence 468999999999999985432 22388999999999999999987421111121 12223333322222 22222
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchh-hHhhh-ccc
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQG-VAETM-RAV 341 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~~-~~~ 341 (779)
+.............. .....-.+++-+|++|++..-.......+...+.......++|++|.... +...+ ...
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 222221111010000 00011124567999999965544444555544443344567777765432 21111 122
Q ss_pred ccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 342 STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 342 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
..+.+.+++.++....+...+..... ..+ .+..+.|++.++|.|-.+..+.
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENV-KCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 47889999999999998876533221 122 3567889999999998655443
No 164
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.41 E-value=3.6e-07 Score=91.28 Aligned_cols=174 Identities=15% Similarity=0.084 Sum_probs=98.2
Q ss_pred Cccccc---hhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 185 AEVYGR---EKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 185 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
..|+|. +..++.+..+.... ..+.+.|+|++|+||||||+.+++. .........|+.+......
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 356663 35566666665432 2368899999999999999999873 2222234456655432110
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhh--hhhhcccCCCC-CCC-cEEEEEcCchh----
Q 040735 262 LILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNS--WRALSCPFGAG-AFG-SKIVVTHRNQG---- 333 (779)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~g-s~IivTtR~~~---- 333 (779)
+. . .+ +.+ .++.+||+||++...... ...+...+... ..+ .++|+||+...
T Consensus 95 -----~~-----~---------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 95 -----ST-----A---------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp -----CG-----G---------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred -----HH-----H---------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 00 0 00 001 346799999996533222 22232222111 112 24777776421
Q ss_pred -----hHhhhcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 334 -----VAETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 334 -----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
+...+.....+.+.+++.++..+++...+..... ..+ .+....|++.++|.+-.+..+.
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHccCCHHHHHHHH
Confidence 1122222267899999999999999876632111 122 3567788889999887665544
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.37 E-value=6.5e-06 Score=86.85 Aligned_cols=178 Identities=16% Similarity=0.136 Sum_probs=103.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
..++|++..++.+..++..... .......|.|+|++|+|||++|+.+.+. ....| +.+.......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~--------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK--------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS---------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc---------
Confidence 4699999999999998865311 1123456899999999999999999763 22222 2222221111
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCC------------------CCCcEEE
Q 040735 265 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAG------------------AFGSKIV 326 (779)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~------------------~~gs~Ii 326 (779)
.......+.. ..+..+|+||++..........+...+... .++..+|
T Consensus 94 -------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 94 -------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp -------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred -------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1111111211 235678999999654433333333322211 1124566
Q ss_pred EEcCchhh-Hhhh-c-ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 327 VTHRNQGV-AETM-R-AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 327 vTtR~~~v-~~~~-~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
.+|..... ...+ . ....+.+.+++.++...++...+..... ....+....|++.+.|.|-.+..+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 66665321 1111 1 1257899999999999998876532211 1223567788889999996555443
No 166
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=4.6e-07 Score=95.33 Aligned_cols=56 Identities=9% Similarity=0.128 Sum_probs=41.9
Q ss_pred cccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCccC-ccccCCCccceEeccc
Q 040735 567 VERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSR 630 (779)
Q Consensus 567 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~ 630 (779)
+.+|+.+.+.+.- ..++...| ++++|+.|++++|.+..++ ..|.++.++.++.+..
T Consensus 100 ~~~L~~l~L~~~i--------~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSEKI--------KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCTTC--------CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCccc--------cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 8889988877621 23455555 8999999999999998775 5677777888777665
No 167
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.34 E-value=5e-06 Score=90.69 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=95.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccC--ceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQ--IKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL 289 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 289 (779)
...+.|+|++|+||||||+.+++. ....++ ..++++. ..+...+...+.... . ..+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~~------~----~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEGK------L----NEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTTC------H----HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHccc------H----HHHHHHh
Confidence 567899999999999999999873 333332 2244433 233444444443221 1 1233344
Q ss_pred CCCeEEEEEeCCcCCCh--hhhhhhcccCCC-CCCCcEEEEEcCch---------hhHhhhcccccccCCCCChHHHHHH
Q 040735 290 SGKKFLVVLDDVWNENY--NSWRALSCPFGA-GAFGSKIVVTHRNQ---------GVAETMRAVSTKTLKELSDDDCLRV 357 (779)
Q Consensus 290 ~~k~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 357 (779)
..++-+|++||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+.+++.++...+
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 44677999999965322 122233332211 12467888888763 2223333345789999999999999
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 040735 358 LIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 394 (779)
Q Consensus 358 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 394 (779)
+.+.+..... ..++ +....|++.++|.+-.+.-
T Consensus 272 L~~~~~~~~~-~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 272 ARKMLEIEHG-ELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHHTC-CCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHcCC-CCCH---HHHHHHHHhcCCCHHHHHH
Confidence 9887632111 1222 3466788889998865543
No 168
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.29 E-value=5.1e-06 Score=90.47 Aligned_cols=180 Identities=17% Similarity=0.133 Sum_probs=100.8
Q ss_pred CccccchhhH---HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 185 AEVYGREKDK---EAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 185 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
..++|.+..+ ..+...+... ....+.|+|++|+||||||+.+.+. ....| +.++........++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHHHH
Confidence 4688988877 6777777543 3367899999999999999999873 22222 22322211111112
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEE-EcCchh--hH-hh
Q 040735 262 LILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVV-THRNQG--VA-ET 337 (779)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~--v~-~~ 337 (779)
.++... ......+++.+|++|++..-.....+.+...+..+ ...+|. ||.+.. +. ..
T Consensus 93 ~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 93 EAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 211110 01112467899999999765444444454444332 233443 555542 11 11
Q ss_pred hcccccccCCCCChHHHHHHHHHhhcCCCCC---CCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 338 MRAVSTKTLKELSDDDCLRVLIQHSLGARDF---NIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 338 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~---~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
......+.+.+++.++...++.+.+...... ....-..+..+.|++.++|.+-.+..+.
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1233578899999999999988765431100 1111223567778888999886555443
No 169
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.28 E-value=9.3e-08 Score=102.16 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=94.5
Q ss_pred CCceeEEEEEeccccccccccccc-----ccccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCccC-
Q 040735 542 SQSLRHFSYIHGEYDGKKRLKSVS-----DVERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISKLP- 614 (779)
Q Consensus 542 ~~~~r~l~~~~~~~~~~~~~~~~~-----~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp- 614 (779)
...++.+.+..+.+.... ...+. ..++|+.|.+.++. ++......+. .+++|+.|+|++|.++...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~-~~~l~~~L~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVK-CTVVAAVLGSGRHALDEVNLASCQ------LDPAGLRTLLPVFLRARKLGLQLNSLGPEAC 143 (372)
T ss_dssp HTTCCEEECTTSCCCHHH-HHHHHHHHSSCSSCEEEEECTTCC------CCHHHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred HhhCCEEEecCCCCCHHH-HHHHHHHHhhCCCCceEEEecCCC------CCHHHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence 345677777665432211 11111 23578888877764 4444444444 5667888888888876421
Q ss_pred cc----c-cCCCccceEecccccccc-----cccccccccccceeeccCCcchh-----hchhhhcCccccceeecCCCc
Q 040735 615 NE----I-GNLKHLRFLNLSRTNIQI-----LPESINSLYNLHTILLEDCRRLK-----KLCKNMGNLMKLHHLRNPNVH 679 (779)
Q Consensus 615 ~~----~-~~l~~L~~L~l~~n~i~~-----lp~~~~~L~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~ 679 (779)
.. + ...++|++|+|++|.|+. ++..+..+++|++|+|++|. ++ .++..+...++|++|++++|.
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 22 2 345778888888888763 45556777888888888883 43 345566777788888888887
Q ss_pred cccc-----CCcccCCCCCCcccCceee
Q 040735 680 SLEE-----MPKGFGKLTCLLTLSRFVV 702 (779)
Q Consensus 680 ~~~~-----~p~~~~~L~~L~~L~~~~~ 702 (779)
++. ++..+...++|++|++..+
T Consensus 223 -i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 223 -AGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred -CCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 432 3334555677777765443
No 170
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.26 E-value=5.2e-06 Score=85.24 Aligned_cols=186 Identities=17% Similarity=0.142 Sum_probs=99.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCH
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSR-------ADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDV 256 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 256 (779)
..+++|.+..++.|.+.+...... +-...+.+.|+|++|+|||+||+.+++. ....| +.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHHH-
Confidence 356899999999998887432000 0023456899999999999999999873 22222 2222211100
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCC-----------Chh---hhhhhcccCC--CCC
Q 040735 257 FRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNE-----------NYN---SWRALSCPFG--AGA 320 (779)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-----------~~~---~~~~l~~~l~--~~~ 320 (779)
.. ...........+......++.+|+||++..- ... ....+...+. ...
T Consensus 90 -------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 -------------KF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp -------------CS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred -------------hc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 00 1111122222233333456789999999431 001 1111111111 122
Q ss_pred CCcEEEEEcCchhhHh-hh----cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCC-ChHHHHH
Q 040735 321 FGSKIVVTHRNQGVAE-TM----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKG-LPLAAKT 394 (779)
Q Consensus 321 ~gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~ 394 (779)
.+..||.||....... .. .-...+.+.+.+.++..+++...+..... ..... ...+++.+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 3567888887553221 11 11246889999999999999887643221 11112 3556677776 4544443
Q ss_pred H
Q 040735 395 L 395 (779)
Q Consensus 395 ~ 395 (779)
+
T Consensus 230 l 230 (285)
T 3h4m_A 230 I 230 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 171
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.20 E-value=3e-06 Score=91.33 Aligned_cols=169 Identities=14% Similarity=0.166 Sum_probs=92.0
Q ss_pred CCCCccEEEecCCCCCccCccccCCCccceEeccccccccccc-ccccccccceeeccCCcchhhchhh-hcCcccccee
Q 040735 596 NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHL 673 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L 673 (779)
++++|+.++|++|.++.+|.......+|+.+.|..+ ++.++. .|.++.+|+.+++..+ +..++.. |.+ .+|+.+
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEE
T ss_pred CcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEE
Confidence 666666677666666666543333466666666533 555533 4566666777766653 4455443 333 566666
Q ss_pred ecCCCcccccCCc-ccCCCCCCcccCceeeCC-------CCCCCchhhhccccccceeEEcccCCCCCcchhhhccCCCC
Q 040735 674 RNPNVHSLEEMPK-GFGKLTCLLTLSRFVVGK-------DSGSGLRELKSLMHLQGTLQISKLENVKDVGDASEAQLNTK 745 (779)
Q Consensus 674 ~l~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~-------~~~~~~~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l 745 (779)
.+.++ +..++. .|.++++|+.+.+..... ..... +.++.+|+ .+.+. +++..+....|.++.+|
T Consensus 254 ~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a---F~~c~~L~-~l~l~--~~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 254 KLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC---LEGCPKLA-RFEIP--ESIRILGQGLLGGNRKV 325 (401)
T ss_dssp EEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT---TTTCTTCC-EECCC--TTCCEECTTTTTTCCSC
T ss_pred EeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH---hhCCccCC-eEEeC--CceEEEhhhhhcCCCCc
Confidence 66432 344433 366677777765432111 11122 33444444 44443 23555566677777777
Q ss_pred CCCchHHHH----hccCCCCCCCCeEEEeecCCCCC
Q 040735 746 PDFKIEIRV----LDMLKPHQKLEELTIAGYGGTKF 777 (779)
Q Consensus 746 ~~L~~~~~~----l~~l~~~~~L~~L~l~~~~~~~~ 777 (779)
+.+....++ -..+..+ +|++|.+.++....+
T Consensus 326 ~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 326 TQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp CEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred cEEEECccccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 776432221 1235556 788888887765544
No 172
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.20 E-value=1.3e-05 Score=81.02 Aligned_cols=188 Identities=14% Similarity=0.087 Sum_probs=97.4
Q ss_pred CccccchhhHHHHHHHHhc---CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHH
Q 040735 185 AEVYGREKDKEAIVELLLR---DDS---RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFR 258 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 258 (779)
.+++|.+..++.+.+++.. ... .+....+.+.|+|++|+|||++|+.+++. ....| +.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVPF---LAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCCE---EEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEechHHHHhh--
Confidence 4689999888777665431 110 01123456889999999999999999873 22222 33333321110
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC------------h---hhhhhhcccCCC--CCC
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN------------Y---NSWRALSCPFGA--GAF 321 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~------------~---~~~~~l~~~l~~--~~~ 321 (779)
. .......+...+.......+.+|+||++..-. . .....+...+.. ...
T Consensus 79 -------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------I-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0 11111222233333334567899999995420 0 111122221111 123
Q ss_pred CcEEEEEcCchhhH-hhh-c---ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChH-HHHHH
Q 040735 322 GSKIVVTHRNQGVA-ETM-R---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTL 395 (779)
Q Consensus 322 gs~IivTtR~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~ 395 (779)
+..||.||...... ... . -...+.+...+.++-.+++...+..... ..........+++.+.|.+- .+..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 45667777654321 111 1 1246778899999999988876532221 11122234678888888754 44443
Q ss_pred H
Q 040735 396 G 396 (779)
Q Consensus 396 ~ 396 (779)
.
T Consensus 222 ~ 222 (262)
T 2qz4_A 222 C 222 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 173
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.19 E-value=7e-07 Score=95.31 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=93.7
Q ss_pred CceeEEEEEecccccccccccc-cccccceEecccCcccccccccchHhhhhh-----cCCCCccEEEecCCCCCc----
Q 040735 543 QSLRHFSYIHGEYDGKKRLKSV-SDVERLRTFLPVNLSDYRRNYLAWSVLQRL-----LNLPRLRVFSLHGYHISK---- 612 (779)
Q Consensus 543 ~~~r~l~~~~~~~~~~~~~~~~-~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~---- 612 (779)
..++.+.+..+.+.... ...+ ..+++|+.|.+.++. ++......+ ...+.|+.|+|++|.++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~-~~~l~~~L~~L~~L~Ls~n~------l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 173 (372)
T 3un9_A 101 HALDEVNLASCQLDPAG-LRTLLPVFLRARKLGLQLNS------LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA 173 (372)
T ss_dssp SCEEEEECTTCCCCHHH-HHHTHHHHHTEEEEECCSSC------CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHH
T ss_pred CCceEEEecCCCCCHHH-HHHHHHHHHhccHhhcCCCC------CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHH
Confidence 45677777665443211 1222 345789999988865 443333332 246889999999999874
Q ss_pred -cCccccCCCccceEecccccccc-----cccccccccccceeeccCCcchh-----hchhhhcCccccceeecCCCcc
Q 040735 613 -LPNEIGNLKHLRFLNLSRTNIQI-----LPESINSLYNLHTILLEDCRRLK-----KLCKNMGNLMKLHHLRNPNVHS 680 (779)
Q Consensus 613 -lp~~~~~l~~L~~L~l~~n~i~~-----lp~~~~~L~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~ 680 (779)
++..+..+++|++|+|++|.|+. ++..+...++|++|+|++| .++ .++..+...++|++|++++|.+
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 45566788999999999999873 4566788889999999999 444 3555666779999999999983
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=8.3e-06 Score=91.07 Aligned_cols=195 Identities=13% Similarity=0.145 Sum_probs=104.7
Q ss_pred CccccchhhHHHHHHHHhcCC-----------CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCC
Q 040735 185 AEVYGREKDKEAIVELLLRDD-----------SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFED 253 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 253 (779)
.+++|++..++.+..++.... ..+.+..+.+.|+|++|+||||+|+.+++.. . + ..+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--~--~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--G--Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--T--C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--C--C-CEEEEeCCCc
Confidence 469999999999999996511 0001234789999999999999999998732 1 1 1233444433
Q ss_pred CCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHH--HHhCCCeEEEEEeCCcCCChh---hhhhhcccCCCCCCCcEEEEE
Q 040735 254 FDVFRVSKLILNSIASDQCTDKDDLNLLQEKLK--KQLSGKKFLVVLDDVWNENYN---SWRALSCPFGAGAFGSKIVVT 328 (779)
Q Consensus 254 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~--~~l~~k~~LlVlDdvw~~~~~---~~~~l~~~l~~~~~gs~IivT 328 (779)
.... +....+........ ......... ....+++.+|++|++..-... .+..+...+... +..||++
T Consensus 114 ~~~~-~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli 185 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMS-----VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILI 185 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCC-----STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEE
T ss_pred chHH-HHHHHHHHHhcccc-----HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEE
Confidence 3322 22222222111100 000000000 012357889999999543221 123333222221 3345555
Q ss_pred cCchh---hHhhhcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh-HHHHHHH
Q 040735 329 HRNQG---VAETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP-LAAKTLG 396 (779)
Q Consensus 329 tR~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~~ 396 (779)
+.... +.........+.+.+++.++..+.+...+..... ..++ +....|++.++|.+ -++..+.
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 54432 2221122356889999999999988776543221 1122 34667888999955 4454443
No 175
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.18 E-value=1.6e-05 Score=84.80 Aligned_cols=197 Identities=12% Similarity=0.098 Sum_probs=103.7
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeC----CCCCHH
Q 040735 185 AEVYGREKDKEA---IVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVF----EDFDVF 257 (779)
Q Consensus 185 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~~~~~ 257 (779)
..++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+.+.......| +.+... ......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchh
Confidence 469999988776 444444332 123688999999999999999998742211111 112211 122333
Q ss_pred HHHHHHHHHhhcC---------------------------CCCC--cccHHHHHHHHHHHh-----CCC----eEEEEEe
Q 040735 258 RVSKLILNSIASD---------------------------QCTD--KDDLNLLQEKLKKQL-----SGK----KFLVVLD 299 (779)
Q Consensus 258 ~~~~~il~~l~~~---------------------------~~~~--~~~~~~~~~~l~~~l-----~~k----~~LlVlD 299 (779)
+.+...+...... .... ..-...+...+.... .++ +.+|+||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 3333333321110 0000 000122222222111 233 4599999
Q ss_pred CCcCCChhhhhhhcccCCCCCCCcEEEEEcCc-----------------hhhHhhhcccccccCCCCChHHHHHHHHHhh
Q 040735 300 DVWNENYNSWRALSCPFGAGAFGSKIVVTHRN-----------------QGVAETMRAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 300 dvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
++..-.......+...+...... .++++|.. ..+.. ....+.+.+++.++...++...+
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~ 272 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRC 272 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHH
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHH
Confidence 99765555555555554433323 34444431 11222 22457899999999999998765
Q ss_pred cCCCCCCCChhHHHHHHHHHHHcC-CChHHHHHHH
Q 040735 363 LGARDFNIPQSLKEVAEKIVKKCK-GLPLAAKTLG 396 (779)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~I~~~c~-G~PLai~~~~ 396 (779)
..... .. -.+....|++.+. |.|-.+..+.
T Consensus 273 ~~~~~-~~---~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 273 EEEDV-EM---SEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HHTTC-CB---CHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHcCC-CC---CHHHHHHHHHHhcCCCHHHHHHHH
Confidence 43221 11 2355677888887 7776554443
No 176
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.18 E-value=4.1e-05 Score=77.89 Aligned_cols=171 Identities=15% Similarity=0.173 Sum_probs=90.0
Q ss_pred ccccchhhHHHHHH-------HHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHH
Q 040735 186 EVYGREKDKEAIVE-------LLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFR 258 (779)
Q Consensus 186 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 258 (779)
.++|....++.+.. .+.... ....+.+.|+|++|+|||+||+.+++. ....| +.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~----- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDK----- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGG-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHH-----
Confidence 46777766665555 332111 235678899999999999999999873 22111 22222211
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCC----------ChhhhhhhcccCC---CCCCCcEE
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNE----------NYNSWRALSCPFG---AGAFGSKI 325 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~----------~~~~~~~l~~~l~---~~~~gs~I 325 (779)
+... . .......+...+......++.+|+||++..- .......+...+. .......|
T Consensus 101 --------~~g~-~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 --------MIGF-S-ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp --------CTTC-C-HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred --------hcCC-c-hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000 0 0011122233333444567899999998431 1111122222222 12234457
Q ss_pred EEEcCchhhHhh---hcc-cccccCCCCCh-HHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCC
Q 040735 326 VVTHRNQGVAET---MRA-VSTKTLKELSD-DDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL 388 (779)
Q Consensus 326 ivTtR~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~ 388 (779)
|.||........ ... ...+.+++++. ++...++.... ... .+....|++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~------~~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG------NFK---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT------CSC---HHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC------CCC---HHHHHHHHHHhcCC
Confidence 777877644332 111 34678899988 66666665421 111 24567788888873
No 177
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.18 E-value=3e-05 Score=81.44 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc-------------------cCceEEEEeC
Q 040735 191 EKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRH-------------------FQIKSWTCVF 251 (779)
Q Consensus 191 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~~~ 251 (779)
+...+.+...+..+. -...+.++|++|+|||++|+.+.+...-... +....++...
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~ 82 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE 82 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc
Confidence 455667777765432 2357889999999999999988763211000 0111222211
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh-----CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEE
Q 040735 252 EDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL-----SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIV 326 (779)
Q Consensus 252 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii 326 (779)
. .......++..+ +.+.+ .+++-++|+|++..-.....+.+...+.....++.+|
T Consensus 83 ~-------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 83 K-------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp T-------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred c-------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 0 001122222222 22222 3567899999997655555566666565544566777
Q ss_pred EEcCchh-hHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 327 VTHRNQG-VAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 327 vTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
++|.+.. +...+ .....+.+.+++.++....+.... ... .+.+..+++.++|.|..+..+.
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------~~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------TMS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------CCC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------CCC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 7766542 32222 233578999999999999888764 111 2455778999999997765544
No 178
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=1e-05 Score=85.94 Aligned_cols=196 Identities=12% Similarity=0.093 Sum_probs=103.7
Q ss_pred CccccchhhHHHHHHHH-hcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc---cccc-ccCce--------------
Q 040735 185 AEVYGREKDKEAIVELL-LRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDD---RVQR-HFQIK-------------- 245 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~-~F~~~-------------- 245 (779)
.+++|.+..++.+..++ .... ... +.|+|++|+||||+|+.+.... .... .++..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 45899999888888877 3221 123 8999999999999999886621 1000 00000
Q ss_pred ----EEEEeCCCC-C--HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCC
Q 040735 246 ----SWTCVFEDF-D--VFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGA 318 (779)
Q Consensus 246 ----~wv~~~~~~-~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~ 318 (779)
.++.+.... . .....++++..+..... ..... .+. .+.+++-++|+|++..-+......+...+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc-----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 011111000 0 00012222222221110 00000 000 0234677999999976554445555554443
Q ss_pred CCCCcEEEEEcCch-hhHhhh-cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 319 GAFGSKIVVTHRNQ-GVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 319 ~~~gs~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
...+..+|++|... .+...+ .....+.+.+++.++....+...+..... ..+ ..+....|++.++|.+-.+..+.
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EEC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 33466777777653 222221 22367899999999999998876532111 111 02556788899999987665544
No 179
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.14 E-value=1.8e-05 Score=82.92 Aligned_cols=179 Identities=19% Similarity=0.151 Sum_probs=100.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.+++|.+..++.+..++.... ...++.+.|++|+|||++|+.+.+. ... ..+.++.+. .. ...++..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~-~~-~~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSD-CK-IDFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTT-CC-HHHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEcccc-cC-HHHHHHHH
Confidence 468999999999999997443 2357788899999999999999873 221 123344322 12 22222222
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC-hhhhhhhcccCCCCCCCcEEEEEcCchhh-Hhhh-ccc
Q 040735 265 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN-YNSWRALSCPFGAGAFGSKIVVTHRNQGV-AETM-RAV 341 (779)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~IivTtR~~~v-~~~~-~~~ 341 (779)
........ ..+++.+|++|++..-. ....+.+...+.....+..+|+||....- ...+ ...
T Consensus 94 ~~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 94 TNFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 22111100 12478899999996543 33444444443333345678888876431 1111 112
Q ss_pred ccccCCCCChHHHHHHH-------HHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 040735 342 STKTLKELSDDDCLRVL-------IQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 394 (779)
Q Consensus 342 ~~~~l~~L~~~~~~~lf-------~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 394 (779)
..+.+.+++.++-.+++ ...+..... ..++ .+....|++.++|.+-.+..
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~--~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIAD--MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSC--HHHHHHHHHHTCSCTTHHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCc--HHHHHHHHHhCCCCHHHHHH
Confidence 47889999988743332 222211111 1111 25566788888887764443
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.10 E-value=1e-05 Score=84.05 Aligned_cols=159 Identities=14% Similarity=0.061 Sum_probs=87.4
Q ss_pred ccccchhhHHHHHHHHhcCC---------CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCH
Q 040735 186 EVYGREKDKEAIVELLLRDD---------SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDV 256 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 256 (779)
.++|.+..++.+.+++.... -........+.|+|++|+|||++|+.+++...........-++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 36788888887776653210 001123457899999999999999988763222111112223333311
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCC---------ChhhhhhhcccCCCCCCCcEEEE
Q 040735 257 FRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNE---------NYNSWRALSCPFGAGAFGSKIVV 327 (779)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~Iiv 327 (779)
.+.... ...........+... +..+|+||++..- .......+...+.....+..||.
T Consensus 109 ---------~l~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------Hhhhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 111110 111122222233222 3459999999632 33333445544444445677888
Q ss_pred EcCchhh----------HhhhcccccccCCCCChHHHHHHHHHhhc
Q 040735 328 THRNQGV----------AETMRAVSTKTLKELSDDDCLRVLIQHSL 363 (779)
Q Consensus 328 TtR~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 363 (779)
||..... ...+ ...+.+++++.++...++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 8865322 1111 25788999999999998877653
No 181
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.02 E-value=5.8e-06 Score=78.64 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999998643 2356789999999999999999863
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.01 E-value=0.00016 Score=75.48 Aligned_cols=186 Identities=15% Similarity=0.051 Sum_probs=101.0
Q ss_pred CCccccchhhHHHHHHHHhc-------CCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCH
Q 040735 184 EAEVYGREKDKEAIVELLLR-------DDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDV 256 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 256 (779)
-.+++|.+..++.|.+.+.. ... .....+-+.++|++|+|||+||+.+++. ....| +.++.
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~------ 84 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSS------ 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEH------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEch------
Confidence 35689999999999887721 011 1223467899999999999999999873 22222 22222
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHH-HHHHHHhCCCeEEEEEeCCcCCCh-----------hhhhhhccc---CCCCCC
Q 040735 257 FRVSKLILNSIASDQCTDKDDLNLLQ-EKLKKQLSGKKFLVVLDDVWNENY-----------NSWRALSCP---FGAGAF 321 (779)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~---l~~~~~ 321 (779)
.++ ... .....+... ..+...-..++.+|+||++..-.. .....+... +.....
T Consensus 85 ~~l----~~~-------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 85 SDL----VSK-------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HHH----HTT-------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HHH----hhc-------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 111 110 011112222 222222345778999999953211 001222221 112234
Q ss_pred CcEEEEEcCchhhHh-hh--cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCC-hHHHHHHH
Q 040735 322 GSKIVVTHRNQGVAE-TM--RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL-PLAAKTLG 396 (779)
Q Consensus 322 gs~IivTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~ 396 (779)
+..||.||....... .+ .-...+.+...+.++-.++|...+..... ... ......|++.+.|. +-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC-VLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC-CCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666776543211 11 12245678888999999999887643221 111 23466788888874 54555444
No 183
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.00 E-value=6.5e-05 Score=78.56 Aligned_cols=155 Identities=13% Similarity=0.156 Sum_probs=85.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSG 291 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 291 (779)
...+.|+|++|+||||||+.+++..... .+ ..++++. ......+...+... ..... ...+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~------~~~~~----~~~~~- 97 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG------TINEF----RNMYK- 97 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT------CHHHH----HHHHH-
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC------cHHHH----HHHhc-
Confidence 4578999999999999999998732111 11 2244432 23334444443321 11122 22222
Q ss_pred CeEEEEEeCCcCCCh--hhhhhhcccCCC-CCCCcEEEEEcCchh---------hHhhhcccccccCCCCChHHHHHHHH
Q 040735 292 KKFLVVLDDVWNENY--NSWRALSCPFGA-GAFGSKIVVTHRNQG---------VAETMRAVSTKTLKELSDDDCLRVLI 359 (779)
Q Consensus 292 k~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 359 (779)
++.+|++||+..-.. .....+...+.. ...|..||+||.... +...+.....+.+.+ +.++...++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 366999999954322 112223222211 123567888876431 222222335688999 9999999998
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHcCCChHH
Q 040735 360 QHSLGARDFNIPQSLKEVAEKIVKKCKGLPLA 391 (779)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 391 (779)
..+..... ..+ .+....|++.+ |..-.
T Consensus 177 ~~~~~~~~-~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 177 EKLKEFNL-ELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTTC-CCC---HHHHHHHHHHC-SSHHH
T ss_pred HHHHhcCC-CCC---HHHHHHHHHhC-CCHHH
Confidence 87642221 222 25567788888 77643
No 184
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.97 E-value=0.0003 Score=73.20 Aligned_cols=190 Identities=14% Similarity=0.098 Sum_probs=100.1
Q ss_pred CCccccchhhHHHHHHHHhcC---C---CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHH
Q 040735 184 EAEVYGREKDKEAIVELLLRD---D---SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVF 257 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 257 (779)
-.+++|.+..++.|.+.+... . .......+.|.++|++|+|||+||+.+++... ...| +.+..+.-.+
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~~---~~i~~~~l~~-- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTF---FSISSSDLVS-- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCEE---EEEECCSSCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCcE---EEEEhHHHHh--
Confidence 346899999888888776310 0 00112346789999999999999999987320 1111 2233222110
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh-------hh----hhhhccc---CCCCCCCc
Q 040735 258 RVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY-------NS----WRALSCP---FGAGAFGS 323 (779)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-------~~----~~~l~~~---l~~~~~gs 323 (779)
.. .......+...+...-..++.+|+||++..-.. .. ...+... +.....+.
T Consensus 85 ------------~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 85 ------------KW--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp ------------SS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred ------------hh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 00 111122222222222345789999999943200 00 0111111 11122345
Q ss_pred EEEEEcCchhhH-hhh--cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCC-hHHHHHHHh
Q 040735 324 KIVVTHRNQGVA-ETM--RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL-PLAAKTLGG 397 (779)
Q Consensus 324 ~IivTtR~~~v~-~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~~ 397 (779)
.||.||...... ..+ .-...+.+...+.++-..++......... ... ......|++.+.|. +-.|..+..
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~---~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-SLT---EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-CCC---HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 566666543211 111 12246778888888888888776532211 111 24567788899887 444555543
No 185
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=6.8e-05 Score=78.99 Aligned_cols=184 Identities=12% Similarity=0.129 Sum_probs=101.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccC-ceEEEEeCCCCCHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQ-IKSWTCVFEDFDVFRVSKLI 263 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 263 (779)
..++|.+..++.+...+..+. ...+.++|++|+||||+|+.+..... ...+. ...-++.+....... .+.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~-ir~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDV-VRNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHH-HHHH
Confidence 357899988998888886432 22388999999999999999886321 11111 111122222111111 1111
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchh-hHhhh-ccc
Q 040735 264 LNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQG-VAETM-RAV 341 (779)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~~-~~~ 341 (779)
+..+.... ..+.+.+-++|+|++..-.....+.+...+......+.+|++|.... +...+ ...
T Consensus 97 i~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 97 IKDFASTR---------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHHBC---------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhhc---------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 11111000 00123477899999965444444455444433334566777665432 21111 122
Q ss_pred ccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 342 STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 342 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
..+.+.+++.++..+.+...+-.... ... .+..+.|++.++|.+--+..+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~-~i~---~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKL-KLS---PNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC-CBC---HHHHHHHHHHHTTCHHHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 46789999999988888765522111 112 245677888999988754433
No 186
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.93 E-value=2.6e-05 Score=84.03 Aligned_cols=192 Identities=8% Similarity=0.026 Sum_probs=122.9
Q ss_pred ccccccccceEecccCcccccccccchHhhhhhcCCCCccEEEecCCCCCccC-ccccCCCccceEecccccccccccc-
Q 040735 562 KSVSDVERLRTFLPVNLSDYRRNYLAWSVLQRLLNLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPES- 639 (779)
Q Consensus 562 ~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~~- 639 (779)
..+.+|.+|+.+.+.++. + ..++...|....|+.+.|..+ ++.++ ..|.++.+|+.++|..+ ++.++..
T Consensus 174 ~aF~~c~~L~~l~l~~n~------l-~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~a 244 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTK------I-TKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEA 244 (401)
T ss_dssp STTTTCTTCCEEECTTSC------C-SEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTT
T ss_pred HHhhCcccCCeeecCCCc------c-eEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccc
Confidence 346788888888886543 1 334555665688999999744 77775 66888999999999874 6777554
Q ss_pred cccccccceeeccCCcchhhchh-hhcCccccceeecCCCcccc-----cCCc-ccCCCCCCcccCceeeCCCCCCCchh
Q 040735 640 INSLYNLHTILLEDCRRLKKLCK-NMGNLMKLHHLRNPNVHSLE-----EMPK-GFGKLTCLLTLSRFVVGKDSGSGLRE 712 (779)
Q Consensus 640 ~~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-----~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~ 712 (779)
|.+ .+|+.+.+.. .+..++. .|.++++|+.+.+.+|. .. .++. .|..+++|+.+.+.. ....-.-..
T Consensus 245 F~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a 318 (401)
T 4fdw_A 245 FRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL 318 (401)
T ss_dssp TTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred ccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh
Confidence 444 7888888854 4666654 47888999999888776 32 3443 377788888876431 111111223
Q ss_pred hhccccccceeEEcccCCCCCcchhhhccCCCCCCCchHHHHhcc-----CCCC-CCCCeEEEeec
Q 040735 713 LKSLMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIRVLDM-----LKPH-QKLEELTIAGY 772 (779)
Q Consensus 713 L~~L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~~l~~-----l~~~-~~L~~L~l~~~ 772 (779)
+.++++|+ .+.+.+ ++..+....|.++ +|+.+....+.+.. +..+ .+++.|++-.+
T Consensus 319 F~~c~~L~-~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 319 LGGNRKVT-QLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TTTCCSCC-EEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred hcCCCCcc-EEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 44555566 666643 4555666677777 78877544433332 2333 47788887553
No 187
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.92 E-value=1.4e-05 Score=72.62 Aligned_cols=114 Identities=16% Similarity=0.016 Sum_probs=67.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-ccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRV-QRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.++|+...+.++.+.+..... ...-|.|+|++|+|||++|+.+++.... ...| + +.+....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc--------
Confidence 578999999999888754321 1235789999999999999999874211 2222 2 554433221
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch
Q 040735 265 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ 332 (779)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 332 (779)
..... .+... +.-.|+||++..-.......+...+.......+||.||...
T Consensus 66 -----------~~~~~---~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -----------PQLND---FIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp -----------SCHHH---HHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred -----------hhhhc---HHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 01111 11111 23478999997665555555555544444456788877653
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.91 E-value=0.00024 Score=74.99 Aligned_cols=187 Identities=15% Similarity=0.079 Sum_probs=98.1
Q ss_pred CccccchhhHHHHHHHHhcC----C--CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHH
Q 040735 185 AEVYGREKDKEAIVELLLRD----D--SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFR 258 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 258 (779)
.+++|.+..++.|.+.+... . .......+-|.|+|++|+|||+||+.+++. ....| +.+..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 46899999999998876311 0 001122356889999999999999999873 22222 222211 1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChh-----------hhhhhcccC---CCCCCCcE
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYN-----------SWRALSCPF---GAGAFGSK 324 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~-----------~~~~l~~~l---~~~~~gs~ 324 (779)
+ .. .. .......+...+...-..++.+|+||++..-... ....+...+ .....+..
T Consensus 120 l----~~----~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 120 L----VS----KW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp H----HS----CC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred H----hh----hh--cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 1 11 10 0111122222222223457899999999542110 011222111 11223556
Q ss_pred EEEEcCchhhH-hhh--cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCC-hHHHHHHH
Q 040735 325 IVVTHRNQGVA-ETM--RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL-PLAAKTLG 396 (779)
Q Consensus 325 IivTtR~~~v~-~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~ 396 (779)
||.||...... ..+ .-...+.+...+.++-..++......... ... ......|++.+.|. +-.|..+.
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS-VLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 66677654211 111 12246678888889888888876532211 111 24466788888884 54455544
No 189
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.90 E-value=8.1e-06 Score=81.84 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=47.5
Q ss_pred CCCCccEEEecCCCCCccC---ccccCCCccceEeccccccccccccccccc--ccceeeccCCcchhhch-------hh
Q 040735 596 NLPRLRVFSLHGYHISKLP---NEIGNLKHLRFLNLSRTNIQILPESINSLY--NLHTILLEDCRRLKKLC-------KN 663 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp---~~~~~l~~L~~L~l~~n~i~~lp~~~~~L~--~L~~L~l~~~~~~~~lp-------~~ 663 (779)
+++.|+.|+|++|.|+.++ ..++.+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5777778888887776543 4556677777777777777765 2344444 66667776664333333 12
Q ss_pred hcCccccceee
Q 040735 664 MGNLMKLHHLR 674 (779)
Q Consensus 664 ~~~l~~L~~L~ 674 (779)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44555555554
No 190
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.87 E-value=0.00022 Score=75.53 Aligned_cols=188 Identities=13% Similarity=0.077 Sum_probs=99.3
Q ss_pred CccccchhhHHHHHHHHhcC----CC--CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHH
Q 040735 185 AEVYGREKDKEAIVELLLRD----DS--RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFR 258 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 258 (779)
.+++|.+..++.+.+.+... .. ......+.|.|+|++|+|||+||+.+++. ....| +.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGATF---FSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCEE---EEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCeE---EEEehHHhhc---
Confidence 46899999999998877421 00 00123467899999999999999999873 22222 3333332111
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC-----------hhhhhhhcccCC----CCCCCc
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN-----------YNSWRALSCPFG----AGAFGS 323 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-----------~~~~~~l~~~l~----~~~~gs 323 (779)
.. ...........+...-..++.+|+||++..-. ......+...+. ....+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 00011111122222223567899999993210 011112222221 112344
Q ss_pred EEEEEcCchh-hHhhh--cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCC-ChHHHHHHHh
Q 040735 324 KIVVTHRNQG-VAETM--RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKG-LPLAAKTLGG 397 (779)
Q Consensus 324 ~IivTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~~~ 397 (779)
.||.||.... +...+ .-...+.+...+.++..+++...+..... ... .+....|++.+.| .+-.|..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~---~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CLS---EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-Ccc---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5666665432 11111 11245678888888888888776532211 111 2456778888888 5556666543
No 191
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=8.2e-05 Score=76.54 Aligned_cols=149 Identities=9% Similarity=-0.053 Sum_probs=90.9
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc-cccccCceEEEEeCC-CCCHHHHHHHHHHH
Q 040735 189 GREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDR-VQRHFQIKSWTCVFE-DFDVFRVSKLILNS 266 (779)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~-~~~~~~~~~~il~~ 266 (779)
|-++.++.+...+... +.....++|++|+||||+|+.+.+... .........++..+. ...+.. .+++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3455667777777533 247889999999999999999876311 111122334443322 122222 2333333
Q ss_pred hhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch-hhHhhhccccccc
Q 040735 267 IASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ-GVAETMRAVSTKT 345 (779)
Q Consensus 267 l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~~~~~~~~ 345 (779)
+.... ..+++-++|+|++..-.....+.+...+-.....+.+|++|.+. .+...+... .++
T Consensus 74 ~~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 74 LNYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HTSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred Hhhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 32211 12457799999997766666777766665555567777666543 454455555 899
Q ss_pred CCCCChHHHHHHHHHhh
Q 040735 346 LKELSDDDCLRVLIQHS 362 (779)
Q Consensus 346 l~~L~~~~~~~lf~~~a 362 (779)
+.+++.++....+.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999887765
No 192
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.84 E-value=2.1e-05 Score=74.40 Aligned_cols=122 Identities=15% Similarity=0.137 Sum_probs=65.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhc
Q 040735 190 REKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIAS 269 (779)
Q Consensus 190 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 269 (779)
.+..++.+.+++..-.. .....+.|+|++|+||||||+.+++.......+ .++++ +..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcC
Confidence 44555556555543321 224689999999999999999998743211112 12333 344444444444433
Q ss_pred CCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhh--hhcccCCCC-CCCcEEEEEcCch
Q 040735 270 DQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWR--ALSCPFGAG-AFGSKIVVTHRNQ 332 (779)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~IivTtR~~ 332 (779)
... . .....+ . ++-+|||||++....+.|. .+...+... ..|..+|+||...
T Consensus 89 ~~~---~---~~~~~~----~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKD---T---KFLKTV----L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCC---S---HHHHHH----H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chH---H---HHHHHh----c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 221 1 222222 1 4568999999743333343 222222211 2467888888653
No 193
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.82 E-value=7.2e-05 Score=82.24 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=79.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc---cccCceEEEEeCCCCCHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQ---RHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
.+++||+.+++.+...|.... ..-+.|+|++|+|||++|+.+++...-. ......-++.+.-.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 469999999999999996532 2356799999999999999988732100 00111111111111
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhhHh-----
Q 040735 262 LILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGVAE----- 336 (779)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~----- 336 (779)
....+. .......+ +...-..++.+|++|.- .+....+...+..+ ..++|.+|.......
T Consensus 246 ---~~~~g~---~e~~~~~~---~~~~~~~~~~iLfiD~~----~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 246 ---TKYRGE---FEDRLKKV---MDEIRQAGNIILFIDAA----IDASNILKPSLARG--ELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp -------------CTTHHHH---HHHHHTCCCCEEEECC------------CCCTTSS--SCEEEEECCTTTTHHHHTTC
T ss_pred ---ccccch---HHHHHHHH---HHHHHhcCCeEEEEeCc----hhHHHHHHHhhcCC--CEEEEecCCHHHHHHHhhcC
Confidence 000000 01122222 22233456789999921 12223344433322 356666665543211
Q ss_pred --hhcccccccCCCCChHHHHHHHHHhh
Q 040735 337 --TMRAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 337 --~~~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
.......+.+.+.+.++...++....
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11123468899999999999998754
No 194
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.82 E-value=7.7e-06 Score=77.88 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=40.3
Q ss_pred CCCCccEEEecCC-CCCc-----cCccccCCCccceEecccccccc-----cccccccccccceeeccCCcchhh-----
Q 040735 596 NLPRLRVFSLHGY-HISK-----LPNEIGNLKHLRFLNLSRTNIQI-----LPESINSLYNLHTILLEDCRRLKK----- 659 (779)
Q Consensus 596 ~l~~L~~L~l~~n-~l~~-----lp~~~~~l~~L~~L~l~~n~i~~-----lp~~~~~L~~L~~L~l~~~~~~~~----- 659 (779)
..+.|+.|+|++| .+.. +...+...++|++|+|++|.|.. +...+...++|++|+|++| .++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHH
Confidence 4555555555555 5542 22334444555555555555541 2333344455555555555 2221
Q ss_pred chhhhcCccccceeec--CCCc
Q 040735 660 LCKNMGNLMKLHHLRN--PNVH 679 (779)
Q Consensus 660 lp~~~~~l~~L~~L~l--~~~~ 679 (779)
+...+...++|++|++ ++|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHhCCCceEEEecCCCCC
Confidence 3344444455555555 4444
No 195
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.81 E-value=1.6e-05 Score=75.73 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=83.2
Q ss_pred ccccccceEecccCc-ccccccccch----HhhhhhcCCCCccEEEecCCCCCc-----cCccccCCCccceEecccccc
Q 040735 564 VSDVERLRTFLPVNL-SDYRRNYLAW----SVLQRLLNLPRLRVFSLHGYHISK-----LPNEIGNLKHLRFLNLSRTNI 633 (779)
Q Consensus 564 ~~~~~~Lr~l~~~~~-~~~~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~i 633 (779)
+...+.|+.|.+.++ . +.. .+...+...+.|++|+|++|.+.. +...+...++|++|+|++|.|
T Consensus 32 l~~~~~L~~L~L~~n~~------i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMN------IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HTTCTTCCEEECTTCTT------CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HhcCCCCCEEEecCCCC------CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 456788999998876 4 322 233444577899999999999873 345566678899999999998
Q ss_pred cc-----cccccccccccceeec--cCCcchhh-----chhhhcCccccceeecCCCc
Q 040735 634 QI-----LPESINSLYNLHTILL--EDCRRLKK-----LCKNMGNLMKLHHLRNPNVH 679 (779)
Q Consensus 634 ~~-----lp~~~~~L~~L~~L~l--~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~ 679 (779)
.. +...+...++|++|+| ++| .++. +...+...++|++|++++|.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 84 5677888889999999 778 4432 45556677899999999987
No 196
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.78 E-value=0.0005 Score=70.71 Aligned_cols=184 Identities=12% Similarity=0.057 Sum_probs=96.3
Q ss_pred CccccchhhHHHHHHHHhcCC------CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDD------SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFR 258 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 258 (779)
.+++|.+..++.+.+.+.... .......+.+.|+|++|+|||++|+.+++. ....| +.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~~---~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSATF---LNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCEE---EEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEeeHHHHhh---
Confidence 468999999999988774310 000112467899999999999999999873 22222 2233322111
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHH-HHHHHHhCCCeEEEEEeCCcCCCh-----------hhhhhhc---ccCCCC--CC
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQ-EKLKKQLSGKKFLVVLDDVWNENY-----------NSWRALS---CPFGAG--AF 321 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~---~~l~~~--~~ 321 (779)
. ......... ..+......++.+|+||++..-.. .....+. ..++.. +.
T Consensus 93 -----------~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 -----------K---YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp -----------S---SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred -----------c---ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0 001112222 222222245678999999943210 0001111 111111 12
Q ss_pred CcEEEEEcCchh-----hHhhhcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChH-HHHHH
Q 040735 322 GSKIVVTHRNQG-----VAETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTL 395 (779)
Q Consensus 322 gs~IivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~ 395 (779)
+..||.||.... +...+ ...+.+...+.++...++...+..... ... .+....|++.+.|.+- ++..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGS-PLD---TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSC-CSC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 455666776542 22222 245667777777777777765432111 111 2456778888888875 55444
Q ss_pred H
Q 040735 396 G 396 (779)
Q Consensus 396 ~ 396 (779)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.74 E-value=0.00043 Score=75.45 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=99.4
Q ss_pred CCccccchhhHHHHHHHHhcC----CC--CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHH
Q 040735 184 EAEVYGREKDKEAIVELLLRD----DS--RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVF 257 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 257 (779)
-.+++|.+..++.|.+.+... .. ......+.|.|+|++|+|||+||+.+++.. ...-++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHH---
Confidence 356899999999998877311 00 011234678999999999999999998732 111233333221
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh-----------hhhhhhcccCCC---CCCCc
Q 040735 258 RVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY-----------NSWRALSCPFGA---GAFGS 323 (779)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~---~~~gs 323 (779)
+. ...... .......+... .-..++.+|+||++..-.. .....+...+.. ...+.
T Consensus 204 -l~----~~~~g~---~~~~~~~~f~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 -LV----SKWLGE---SEKLVKNLFQL---ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ----------------CCCTHHHHHHH---HHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred -HH----hhhcch---HHHHHHHHHHH---HHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 11 111111 11122222222 2235688999999953210 011122222221 23456
Q ss_pred EEEEEcCchhhH-hhh--cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCC-hHHHHHHH
Q 040735 324 KIVVTHRNQGVA-ETM--RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL-PLAAKTLG 396 (779)
Q Consensus 324 ~IivTtR~~~v~-~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~ 396 (779)
.||.||...... ..+ .-...+.+...+.++...+|......... ... ......|++.+.|. +-.|..+.
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-SLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-ECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 677777654321 111 11245677888888888888776532211 111 24466788888884 44555444
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.74 E-value=0.00046 Score=71.07 Aligned_cols=180 Identities=12% Similarity=0.077 Sum_probs=95.4
Q ss_pred CccccchhhHHHHHHHHhcCC-------CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHH
Q 040735 185 AEVYGREKDKEAIVELLLRDD-------SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVF 257 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 257 (779)
.+++|.+..++.+.+++...- .-+-...+.+.|+|++|+|||+||+.+++. .... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 468999998888888764310 000123467899999999999999999973 2222 22222 22
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh--------------hhhhhhcccCC--CCCC
Q 040735 258 RVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY--------------NSWRALSCPFG--AGAF 321 (779)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--------------~~~~~l~~~l~--~~~~ 321 (779)
++. ....... .. .+...+.......+.+|+||++..-.. .....+...+. ....
T Consensus 84 ~l~----~~~~g~~---~~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 84 ELL----TMWFGES---EA---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHH----HHHHTTC---TT---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHH----hhhcCch---HH---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 222 2222211 11 122333333345689999999942100 00122222221 1123
Q ss_pred CcEEEEEcCchhhH-hh-hc---ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChH
Q 040735 322 GSKIVVTHRNQGVA-ET-MR---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL 390 (779)
Q Consensus 322 gs~IivTtR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PL 390 (779)
+..||.||...... .. .. -...+.+...+.++-.+++......... ..... ...++..+.|.|-
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg 222 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSG 222 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCH
Confidence 56677777655322 11 11 1246788888988888888766532211 11112 2345556777654
No 199
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.74 E-value=0.00059 Score=73.17 Aligned_cols=188 Identities=13% Similarity=0.100 Sum_probs=96.6
Q ss_pred CCccccchhhHHHHHHHHhcC----C--CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHH
Q 040735 184 EAEVYGREKDKEAIVELLLRD----D--SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVF 257 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 257 (779)
-.+++|.+..++.+..++... . .......+.|.|+|++|+|||+||+.+++. ....| +.++++.-..
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~-- 186 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNATF---FNISAASLTS-- 186 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCEE---EEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCcE---EEeeHHHhhc--
Confidence 356999999999998887321 0 000112467899999999999999999863 22222 2222222111
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC-----------hhhhhhhcccC---CC-CCCC
Q 040735 258 RVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN-----------YNSWRALSCPF---GA-GAFG 322 (779)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-----------~~~~~~l~~~l---~~-~~~g 322 (779)
.. .......+...+...-..++.+|+||++..-. ......+...+ .. ....
T Consensus 187 ~~--------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 187 KY--------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred cc--------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 00 00011112222222223466899999994310 00011111111 11 1123
Q ss_pred cEEEEEcCchhhH-hhh-ccc-ccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChH-HHHHHH
Q 040735 323 SKIVVTHRNQGVA-ETM-RAV-STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLG 396 (779)
Q Consensus 323 s~IivTtR~~~v~-~~~-~~~-~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~ 396 (779)
..||.||...... ..+ ... ..+.+...+.++...++...+..... ... .+....|++.+.|..- +|..+.
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~---~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-PLT---QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-CSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 4566566543211 111 112 35778888999999988876633211 111 2456778888888554 555543
No 200
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=1.5e-05 Score=79.88 Aligned_cols=98 Identities=19% Similarity=0.150 Sum_probs=70.8
Q ss_pred EEecCCCCCccCc----cccCCCccceEecccccccccc---cccccccccceeeccCCcchhhchhhhcCcc--cccee
Q 040735 603 FSLHGYHISKLPN----EIGNLKHLRFLNLSRTNIQILP---ESINSLYNLHTILLEDCRRLKKLCKNMGNLM--KLHHL 673 (779)
Q Consensus 603 L~l~~n~l~~lp~----~~~~l~~L~~L~l~~n~i~~lp---~~~~~L~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L 673 (779)
++++.|....++. ...++++|+.|+|++|+|+.++ ..+..+++|++|+|++| .+..+ ..+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceE
Confidence 5556665444332 1256889999999999998654 66789999999999999 66665 3344444 99999
Q ss_pred ecCCCcccccCCc-------ccCCCCCCcccCceee
Q 040735 674 RNPNVHSLEEMPK-------GFGKLTCLLTLSRFVV 702 (779)
Q Consensus 674 ~l~~~~~~~~~p~-------~~~~L~~L~~L~~~~~ 702 (779)
++++|++.+.+|. -+..+++|+.|+...+
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECCcCC
Confidence 9999996555652 2567888888875444
No 201
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.73 E-value=4.5e-05 Score=90.64 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=79.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---cccc-C-ceEEEEeCCCCCHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRV---QRHF-Q-IKSWTCVFEDFDVFRV 259 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~F-~-~~~wv~~~~~~~~~~~ 259 (779)
.+++||+.+++++...|.... ...+.++|++|+|||++|+.+++...- .... . ..++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 468999999999999996533 234689999999999999999873211 0011 1 122232211100
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhC-CCeEEEEEeCCcCCCh-----hhhh---hhcccCCCCCCCcEEEEEcC
Q 040735 260 SKLILNSIASDQCTDKDDLNLLQEKLKKQLS-GKKFLVVLDDVWNENY-----NSWR---ALSCPFGAGAFGSKIVVTHR 330 (779)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~~~~-----~~~~---~l~~~l~~~~~gs~IivTtR 330 (779)
.... .......+...+...-. +++.+|++|++..-.. ..++ .+...+.. .+..+|.+|.
T Consensus 240 ---------g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred ---------cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 0000 01111222222333223 4689999999954210 0011 12222211 2345665555
Q ss_pred chhhH-----hh-hcccccccCCCCChHHHHHHHHHh
Q 040735 331 NQGVA-----ET-MRAVSTKTLKELSDDDCLRVLIQH 361 (779)
Q Consensus 331 ~~~v~-----~~-~~~~~~~~l~~L~~~~~~~lf~~~ 361 (779)
..... .. ......+.+.+++.++...++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 43321 11 112346889999999999988643
No 202
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.69 E-value=3.6e-05 Score=74.36 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=61.9
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 040735 192 KDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQ 271 (779)
Q Consensus 192 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 271 (779)
..++.+.+++..... ......+.|+|++|+|||+||+.+++.. ......++|+++. .+...+......
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEhH------HHHHHHHHHhcc--
Confidence 345566666654321 1122678999999999999999998743 2223345565542 333333332211
Q ss_pred CCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhh--hcc-cCCCC-CCCcEEEEEcCch
Q 040735 272 CTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRA--LSC-PFGAG-AFGSKIVVTHRNQ 332 (779)
Q Consensus 272 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~--l~~-~l~~~-~~gs~IivTtR~~ 332 (779)
.........+.. .-+|||||++......|.. +.. .+... ..+.++|+||...
T Consensus 104 ----~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 ----QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ----CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred ----chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 112233333322 2399999996643334332 221 11111 2355788888753
No 203
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.64 E-value=7.7e-05 Score=78.84 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=7.0
Q ss_pred CCccceEeccccccc
Q 040735 620 LKHLRFLNLSRTNIQ 634 (779)
Q Consensus 620 l~~L~~L~l~~n~i~ 634 (779)
+++|++|+|++|.+.
T Consensus 251 ~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQ 265 (362)
T ss_dssp CTTCCEEEEESCTTH
T ss_pred CCCcCEEeCCCCCCc
Confidence 344555555444443
No 204
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.61 E-value=3.8e-05 Score=71.33 Aligned_cols=85 Identities=11% Similarity=0.189 Sum_probs=58.9
Q ss_pred CCccEEEecCCCCCcc-CccccCCCccceEeccccc-ccc-cccccccc----cccceeeccCCcchhhc-hhhhcCccc
Q 040735 598 PRLRVFSLHGYHISKL-PNEIGNLKHLRFLNLSRTN-IQI-LPESINSL----YNLHTILLEDCRRLKKL-CKNMGNLMK 669 (779)
Q Consensus 598 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~-i~~-lp~~~~~L----~~L~~L~l~~~~~~~~l-p~~~~~l~~ 669 (779)
..|+.||+++|.++.. -..+.++++|++|+|++|. |+. --..++.+ ++|++|+|++|..++.- -..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3688899999887743 2556788889999998874 652 12334443 46889999988655442 123667888
Q ss_pred cceeecCCCcccc
Q 040735 670 LHHLRNPNVHSLE 682 (779)
Q Consensus 670 L~~L~l~~~~~~~ 682 (779)
|++|++++|..++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 8888888887443
No 205
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.61 E-value=3.8e-05 Score=81.17 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=66.4
Q ss_pred CCCCccEEEecCCCCCccCccccCCCccceEeccccccc-ccccccc--cccccceeeccCCc-------chhhchhhh-
Q 040735 596 NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQ-ILPESIN--SLYNLHTILLEDCR-------RLKKLCKNM- 664 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~-~lp~~~~--~L~~L~~L~l~~~~-------~~~~lp~~~- 664 (779)
.+++|+.|+|++|.-..+|. +. +++|++|+|..+.+. .....+. .+++|+.|+|+.+. .+..+...+
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred cCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 66778888887763223443 33 677788887777654 1122233 57777777775311 122222222
Q ss_pred -cCccccceeecCCCcccccCCccc---CCCCCCcccCceeeCCCCCC----CchhhhccccccceeEEcc
Q 040735 665 -GNLMKLHHLRNPNVHSLEEMPKGF---GKLTCLLTLSRFVVGKDSGS----GLRELKSLMHLQGTLQISK 727 (779)
Q Consensus 665 -~~l~~L~~L~l~~~~~~~~~p~~~---~~L~~L~~L~~~~~~~~~~~----~~~~L~~L~~L~~~L~i~~ 727 (779)
..+++|++|++.+|......+..+ +.+++|++|++..+.. ... ....+.++++|+ .|++..
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L-~d~G~~~L~~~L~~l~~L~-~L~L~~ 316 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL-TDEGARLLLDHVDKIKHLK-FINMKY 316 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC-BHHHHHHHHTTHHHHTTCS-EEECCS
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC-ChHHHHHHHhhcccCCcce-EEECCC
Confidence 246777888777776332222222 2466677776533221 111 122334556666 666654
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.61 E-value=0.00044 Score=75.94 Aligned_cols=185 Identities=14% Similarity=0.076 Sum_probs=98.9
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDS-------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVF 257 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 257 (779)
..++|.+..++++.+++..... -+....+-|.|+|++|+|||++|+.+++. ....| +.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEch------
Confidence 4689999999999887753200 00123456889999999999999999873 22222 223221
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh-----------hhhhhhcccCC--CCCCCcE
Q 040735 258 RVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY-----------NSWRALSCPFG--AGAFGSK 324 (779)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~--~~~~gs~ 324 (779)
.+. ... ...........+.....+++.+|+||++..-.. .....+...+. ....+..
T Consensus 273 ----~l~----~~~--~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 ----EIM----SKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp ----HHH----TSC--TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred ----Hhh----hhh--cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 111 111 111222333444444456789999999832100 01112222221 1223456
Q ss_pred EEEEcCchhh-Hhhh----cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCC-hHHHHHH
Q 040735 325 IVVTHRNQGV-AETM----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL-PLAAKTL 395 (779)
Q Consensus 325 IivTtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~ 395 (779)
||.||..... ...+ .-...+.+...+.++-.++|...+..... ..... ...+++.+.|. +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHH
Confidence 6667765422 1121 12245788999999999999877532211 11112 34566677764 4444444
No 207
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.59 E-value=0.00063 Score=79.86 Aligned_cols=156 Identities=16% Similarity=0.180 Sum_probs=85.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---ccc-cCceEEEEeCCCCCHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRV---QRH-FQIKSWTCVFEDFDVFRVS 260 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~-F~~~~wv~~~~~~~~~~~~ 260 (779)
..++||+.+++++.+.|.... ..-+.|+|++|+|||++|+.+.+...- ... ....+|. +.-. .+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~-~~~~----~l- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-LDIG----SL- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-CCCC-------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-EcHH----HH-
Confidence 468999999999999996432 345789999999999999998863211 111 1222221 1100 00
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHh-CCCeEEEEEeCCcCC--------Chhh-hhhhcccCCCCCCCcEEEEEcC
Q 040735 261 KLILNSIASDQCTDKDDLNLLQEKLKKQL-SGKKFLVVLDDVWNE--------NYNS-WRALSCPFGAGAFGSKIVVTHR 330 (779)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~--------~~~~-~~~l~~~l~~~~~gs~IivTtR 330 (779)
+.... .....+.....+.+.+ ..++.+|++|++..- ...+ ...+...+. . .+..+|.+|.
T Consensus 254 ------~~~~~--~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~-~~~~~I~at~ 323 (758)
T 1r6b_X 254 ------LAGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-S-GKIRVIGSTT 323 (758)
T ss_dssp -------CCCC--CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-S-CCCEEEEEEC
T ss_pred ------hcccc--ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-C-CCeEEEEEeC
Confidence 00011 1122232233333333 446799999999532 1111 122333332 2 2456666666
Q ss_pred chhhHhhh-------cccccccCCCCChHHHHHHHHHhh
Q 040735 331 NQGVAETM-------RAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 331 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
........ .....+.+.+.+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 54322111 112367899999999888887543
No 208
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.58 E-value=3.2e-05 Score=70.03 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=33.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.++|++..++++.+.+..... ...-|.|+|++|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 578999988888888754211 1234789999999999999998873
No 209
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.56 E-value=0.0022 Score=66.97 Aligned_cols=178 Identities=18% Similarity=0.168 Sum_probs=92.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
..++|.+..++.+...+..... .+.....+.|+|++|+||||||+.+++. ....|. . .+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~----~-~sg~~~--------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH----V-TSGPVL--------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE----E-EETTTC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE----E-EechHh---------
Confidence 4578988888877766643210 0123457899999999999999999873 221111 1 111100
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCC--------C----------CCcEEE
Q 040735 265 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAG--------A----------FGSKIV 326 (779)
Q Consensus 265 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~--------~----------~gs~Ii 326 (779)
.....+...+ ..+. ++.++++|++..-.....+.+...+... + +...++
T Consensus 88 -----------~~~~~l~~~~-~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 88 -----------VKQGDMAAIL-TSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp -----------CSHHHHHHHH-HHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred -----------cCHHHHHHHH-HHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 0011111111 1122 3447778887543222222221111000 0 011222
Q ss_pred -EEcCchhhHhhhcc--cccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 040735 327 -VTHRNQGVAETMRA--VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 396 (779)
Q Consensus 327 -vTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 396 (779)
.|++...+...+.. ...+.+++.+.++..+++.+.+-.... . ...+.+..|++.++|.|-.+..+.
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~---~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-E---IEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-C---BCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHhcCCChHHHHHHH
Confidence 34444332211111 124789999999999999876532111 1 123568889999999997554443
No 210
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.53 E-value=0.00029 Score=82.64 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=80.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc---cccccCceEEEEeCCCCCHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDR---VQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
.+++||+.+++++...|.... ..-+.++|++|+|||++|+.+.+... +-......-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 469999999999999996533 23478999999999999999886321 000011111111111
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhhHhh----
Q 040735 262 LILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGVAET---- 337 (779)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~---- 337 (779)
.....+. ..... ...+......++.+|++|.- .+....+...+.. ...++|.||........
T Consensus 245 --g~~~~G~---~e~~l---~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 --GTKYRGE---FEDRL---KKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp -------------CTTH---HHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTC
T ss_pred --cccccch---HHHHH---HHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhcc
Confidence 0000000 11122 22333333467889999922 1222233333332 24567776665442111
Q ss_pred ---hcccccccCCCCChHHHHHHHHHhh
Q 040735 338 ---MRAVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 338 ---~~~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
......+.+.+.+.++...++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1122568899999999999998654
No 211
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.50 E-value=0.00057 Score=70.79 Aligned_cols=49 Identities=24% Similarity=0.372 Sum_probs=36.8
Q ss_pred ccccchhhHHHHHHHHhcCC---CCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 186 EVYGREKDKEAIVELLLRDD---SRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++|.+..++.+...+.... .........+.++|++|+|||++|+.++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 46799988888888776431 10112245899999999999999999987
No 212
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.44 E-value=0.00033 Score=70.76 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=33.5
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.++|.+..+.++.+.+..... ....|.|+|++|+|||++|+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 578999998888877654221 1246789999999999999999874
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00097 Score=70.29 Aligned_cols=180 Identities=16% Similarity=0.091 Sum_probs=95.8
Q ss_pred CCccccchhhHHHHHHHHhcC----C---CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCH
Q 040735 184 EAEVYGREKDKEAIVELLLRD----D---SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDV 256 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 256 (779)
-.++.|-++.+++|.+.+.-+ + .-+-..++-|.++|++|+|||.||+++++. ....| +.+..+.-.+
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc-
Confidence 356889998888887765321 0 001223567889999999999999999973 33333 2333322111
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh--------h------hhhhhcccCC--CCC
Q 040735 257 FRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY--------N------SWRALSCPFG--AGA 320 (779)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--------~------~~~~l~~~l~--~~~ 320 (779)
.. .......+.+.....-...+++|++|++..-.. . ....+...+. ...
T Consensus 221 -------------k~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 -------------KY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp -------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred -------------cc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 00 111112222222222245789999999953100 0 0111221121 122
Q ss_pred CCcEEEEEcCchhhHh-----hhcccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh
Q 040735 321 FGSKIVVTHRNQGVAE-----TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 389 (779)
Q Consensus 321 ~gs~IivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P 389 (779)
.+..||.||....... .-.-+..+.++..+.++-.++|+.+.-.... ...-+ ...|++.+.|.-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCCC
Confidence 3556677776553221 1123467888888888888888766532211 11112 356777887754
No 214
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.38 E-value=0.00045 Score=71.17 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=36.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHH
Confidence 588999999988888765321 224578999999999999999986
No 215
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.37 E-value=0.00015 Score=73.53 Aligned_cols=51 Identities=27% Similarity=0.278 Sum_probs=34.9
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSR------ADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.+++|.+..++.+.+.+..-... +....+-+.|+|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46899998888887765410000 0011234779999999999999999873
No 216
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.35 E-value=0.00071 Score=74.09 Aligned_cols=99 Identities=11% Similarity=0.071 Sum_probs=58.3
Q ss_pred EEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEE---------cC----chhhH-hhhcccccccCCCCChHHHHHHHH
Q 040735 294 FLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVT---------HR----NQGVA-ETMRAVSTKTLKELSDDDCLRVLI 359 (779)
Q Consensus 294 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivT---------tR----~~~v~-~~~~~~~~~~l~~L~~~~~~~lf~ 359 (779)
-++++|++..-+....+.+...+.......-|+.| |. ...+. ........+.+.+++.++..+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 39999999776666777777666554434322244 32 11111 111222457999999999999998
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHc-CCChHHHHHHH
Q 040735 360 QHSLGARDFNIPQSLKEVAEKIVKKC-KGLPLAAKTLG 396 (779)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~I~~~c-~G~PLai~~~~ 396 (779)
..+-.... ..+ .+....|++.+ +|.|..+..+.
T Consensus 377 ~~~~~~~~-~~~---~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 377 IRAQTEGI-NIS---EEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHTC-CBC---HHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHhCC-CCC---HHHHHHHHHHccCCCHHHHHHHH
Confidence 76521111 111 24566777777 78886554443
No 217
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.34 E-value=6.8e-05 Score=69.60 Aligned_cols=91 Identities=11% Similarity=0.130 Sum_probs=52.8
Q ss_pred ccCccccCCCccceEeccccccccc-ccccccccccceeeccCCcchhhc-hhhhcCc----cccceeecCCCcccccC-
Q 040735 612 KLPNEIGNLKHLRFLNLSRTNIQIL-PESINSLYNLHTILLEDCRRLKKL-CKNMGNL----MKLHHLRNPNVHSLEEM- 684 (779)
Q Consensus 612 ~lp~~~~~l~~L~~L~l~~n~i~~l-p~~~~~L~~L~~L~l~~~~~~~~l-p~~~~~l----~~L~~L~l~~~~~~~~~- 684 (779)
.+|.....-.+|++||++++.|+.. -..+.++++|++|+|++|..++.- -..+..+ ++|++|++++|..++.-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 3454332334689999998887732 345678888888888888655432 1224443 36888888887633321
Q ss_pred CcccCCCCCCcccCceee
Q 040735 685 PKGFGKLTCLLTLSRFVV 702 (779)
Q Consensus 685 p~~~~~L~~L~~L~~~~~ 702 (779)
-..+.++++|++|++..+
T Consensus 132 l~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HHHGGGCTTCCEEEEESC
T ss_pred HHHHhcCCCCCEEECCCC
Confidence 011334445555544433
No 218
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.0013 Score=70.56 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=96.1
Q ss_pred CCCccccchhhHHHHHHHHhcC---CC----CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC
Q 040735 183 NEAEVYGREKDKEAIVELLLRD---DS----RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD 255 (779)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 255 (779)
.-.++.|-+..+++|.+.+.-+ .. -+-..++-|.++|++|+|||+||+++++. ....| +.+..+.-.+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s 253 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD 253 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc
Confidence 3456889998888887766321 00 01234578899999999999999999973 33333 2333322111
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC-------h---h----hhhhhcccCC--CC
Q 040735 256 VFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN-------Y---N----SWRALSCPFG--AG 319 (779)
Q Consensus 256 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-------~---~----~~~~l~~~l~--~~ 319 (779)
.. .......+.......-...+++|++|++..-. . . ....+...+. ..
T Consensus 254 --------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 --------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp --------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred --------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 00 11111112222222224578999999995310 0 0 0112222221 12
Q ss_pred CCCcEEEEEcCchhhHhh-h-c---ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh
Q 040735 320 AFGSKIVVTHRNQGVAET-M-R---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 389 (779)
Q Consensus 320 ~~gs~IivTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P 389 (779)
..+..||.||........ + . -+..+.++..+.++-.++|..+...... ...-+ ...|++.+.|+-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 235677778876543221 1 1 1346778888888888888765532211 11112 345677777754
No 219
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.24 E-value=0.00089 Score=69.17 Aligned_cols=50 Identities=24% Similarity=0.289 Sum_probs=36.5
Q ss_pred CccccchhhHHHHHHHHhcC--CCC------CCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 185 AEVYGREKDKEAIVELLLRD--DSR------ADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..++|.+..++.+...+... ... .......+.|+|++|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35899999999998877541 000 001235678999999999999999987
No 220
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.24 E-value=0.00012 Score=66.75 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..+.|+|+.|+|||||++.++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 221
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0012 Score=70.54 Aligned_cols=52 Identities=27% Similarity=0.184 Sum_probs=37.9
Q ss_pred CCCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 183 NEAEVYGREKDKEAIVELLLRDDS-------RADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.-.++.|-+..+++|.+.+.-.-. -+-..++-|.++|++|+|||+||+++++
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345688999988888776532100 0123456789999999999999999997
No 222
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.15 E-value=0.0033 Score=68.40 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=93.1
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDS------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFR 258 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 258 (779)
.+++|.+..++++.+.+..-.. -+..-.+-|.|+|++|+|||+||+.+++. ....| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 4689999887777665432100 01112344889999999999999999873 22222 22333221110
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh--------------hhhhhhcccCC--CCCCC
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY--------------NSWRALSCPFG--AGAFG 322 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--------------~~~~~l~~~l~--~~~~g 322 (779)
. ...........+.....+.+.+|+||++..-.. .....+...+. ....+
T Consensus 89 -------------~-~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 -------------F-VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp -------------C-TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred -------------H-hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 011112233334444456789999999943110 01122222111 11235
Q ss_pred cEEEEEcCchhhHh-h-hc---ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh
Q 040735 323 SKIVVTHRNQGVAE-T-MR---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 389 (779)
Q Consensus 323 s~IivTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P 389 (779)
..||.||....... . .. -...+.+...+.++-.+++..++..... ..... ...|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 56777777654322 1 11 1236778888877777777665532211 11111 344777888876
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.15 E-value=0.0013 Score=77.16 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=83.2
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHH
Q 040735 185 AEVYGREKDKEAIVELLLRDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSK 261 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 261 (779)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+.+.. ...-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhccccc----
Confidence 4589999999888888864321 011233478999999999999999998732 1111122344443221100
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCChhhhhhhcccCCCC-----------CCCcEEEEEcC
Q 040735 262 LILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENYNSWRALSCPFGAG-----------AFGSKIVVTHR 330 (779)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivTtR 330 (779)
......+...++. ....+|+||++...+......+...+..+ .....||+||.
T Consensus 565 -------------~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 565 -------------STSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -------------CCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred -------------ccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0001111122221 23348999999765555555444333221 13468888887
Q ss_pred ch-----h----hHhhhc-----c-cccccCCCCChHHHHHHHHHh
Q 040735 331 NQ-----G----VAETMR-----A-VSTKTLKELSDDDCLRVLIQH 361 (779)
Q Consensus 331 ~~-----~----v~~~~~-----~-~~~~~l~~L~~~~~~~lf~~~ 361 (779)
.. . +...+. . ...+.+.+++.++...++...
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 31 1 111111 1 146778888887777766543
No 224
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.13 E-value=0.0061 Score=60.95 Aligned_cols=183 Identities=13% Similarity=0.107 Sum_probs=89.9
Q ss_pred CccccchhhHHHHHHHHh---cCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHH
Q 040735 185 AEVYGREKDKEAIVELLL---RDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFR 258 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 258 (779)
.+++|.+..++.+.+.+. .... -+....+-+.|+|++|+||||||+.+++. ....| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 468999888777766542 1100 00112345889999999999999999873 22122 2232221100
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh--------------hhhhhhcccCC--CCCCC
Q 040735 259 VSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY--------------NSWRALSCPFG--AGAFG 322 (779)
Q Consensus 259 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--------------~~~~~l~~~l~--~~~~g 322 (779)
.. .......+...+.......+.++++|++..-.. .....+...+. ....+
T Consensus 84 -----------~~--~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 -----------MF--VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp -----------SC--CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred -----------Hh--hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 00 111222333344444456678999999832100 01111111111 11234
Q ss_pred cEEEEEcCchh-hHhhh-c---ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCC-ChHHHH
Q 040735 323 SKIVVTHRNQG-VAETM-R---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKG-LPLAAK 393 (779)
Q Consensus 323 s~IivTtR~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~ 393 (779)
..||.||.... +.... . -...+.+...+.++-.+++....-... ...... ...++..+.| .+--+.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHH
Confidence 56677776543 21111 1 123566777777777777766542211 011111 2346667777 554444
No 225
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.00087 Score=71.76 Aligned_cols=179 Identities=15% Similarity=0.095 Sum_probs=92.9
Q ss_pred CCCccccchhhHHHHHHHHhc----CC---CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC
Q 040735 183 NEAEVYGREKDKEAIVELLLR----DD---SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD 255 (779)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 255 (779)
.-.++.|-+..+++|.+.+.. ++ .-+-..++-|.++|++|+|||.||+++++. ....| +.++.+.-.+
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~~ 253 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLVQ 253 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhhh
Confidence 345688999988888776421 10 001234578899999999999999999973 33333 2233221110
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHH-HHhCCCeEEEEEeCCcC------CChh--------hhhhhcccCCC--
Q 040735 256 VFRVSKLILNSIASDQCTDKDDLNLLQEKLK-KQLSGKKFLVVLDDVWN------ENYN--------SWRALSCPFGA-- 318 (779)
Q Consensus 256 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdvw~------~~~~--------~~~~l~~~l~~-- 318 (779)
.. .. ..+.....+. ..-...+++|++|++.. .... ....+...+..
T Consensus 254 --------------~~--vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 254 --------------MY--IG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp --------------SC--SS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred --------------cc--cc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 00 11 1111222221 22234689999999832 0000 01112222221
Q ss_pred CCCCcEEEEEcCchhhHhh-h----cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCC
Q 040735 319 GAFGSKIVVTHRNQGVAET-M----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL 388 (779)
Q Consensus 319 ~~~gs~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~ 388 (779)
...+..||.||........ + .-...+.++..+.++-.++|..+.-.... ...-+ ...|++.+.|.
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 1234566667776543221 1 12356778888888888888655422111 11112 35567777775
No 226
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.02 E-value=0.0026 Score=61.82 Aligned_cols=85 Identities=20% Similarity=0.097 Sum_probs=51.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhh-----------cCCCCCcccHHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIA-----------SDQCTDKDDLNL 280 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~-----------~~~~~~~~~~~~ 280 (779)
-.++.|+|++|+|||||+..+.. ..-..++|++....++...+.. +....+ ........+...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 36899999999999999999886 1223567887766556544432 332221 111112222334
Q ss_pred HHHHHHHHhCCCeEEEEEeCCc
Q 040735 281 LQEKLKKQLSGKKFLVVLDDVW 302 (779)
Q Consensus 281 ~~~~l~~~l~~k~~LlVlDdvw 302 (779)
....++..+..++-+||+|.+.
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 4555555554457799999883
No 227
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.01 E-value=0.0016 Score=72.79 Aligned_cols=50 Identities=34% Similarity=0.378 Sum_probs=34.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|-+.....+.+.+.-..-.......++.++|++|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 35788887777765544311100111346899999999999999999986
No 228
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0035 Score=67.00 Aligned_cols=179 Identities=15% Similarity=0.100 Sum_probs=94.2
Q ss_pred CccccchhhHHHHHHHHhc----CC---CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHH
Q 040735 185 AEVYGREKDKEAIVELLLR----DD---SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVF 257 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 257 (779)
.++.|-++.+++|.+.+.- .+ .-+-..++-|.++|++|+|||+||+++++. ....| +.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhhc--
Confidence 4688999888888775421 00 001234578889999999999999999973 33333 2233221110
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCC------hh--------hhhhhcccCC--CCCC
Q 040735 258 RVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNEN------YN--------SWRALSCPFG--AGAF 321 (779)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~------~~--------~~~~l~~~l~--~~~~ 321 (779)
.. .......+.......-...+++|++|++..-. .. ....+...+. ....
T Consensus 282 ------------k~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 ------------KY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ------------CS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ------------cc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 00 11111222222222334578999999994310 00 0111111111 1223
Q ss_pred CcEEEEEcCchhhHh-hh----cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh
Q 040735 322 GSKIVVTHRNQGVAE-TM----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 389 (779)
Q Consensus 322 gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P 389 (779)
+..||.||....... .+ .-...+.++..+.++-.++|..+.-.-.. ...-+ ...|++.|.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIR----WELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCC----HHHHHHHCCCCC
Confidence 445666776543221 11 22357788888888888888766532211 11112 345677887753
No 229
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.97 E-value=0.0024 Score=66.67 Aligned_cols=151 Identities=15% Similarity=0.083 Sum_probs=81.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHH
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILN 265 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 265 (779)
.++|++..++.+...+... .-+.++|++|+|||+||+.+.+. ....| ..+.+.......++..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g---- 90 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIG---- 90 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHE----
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCC----
Confidence 5789999999888888653 25889999999999999999862 22222 2233333333332211
Q ss_pred HhhcCCCCCcccHHHHHHHHHHHhCC--CeEEEEEeCCcCCChhhhhhhcccCCC-----------CCCCcEEEEEcCch
Q 040735 266 SIASDQCTDKDDLNLLQEKLKKQLSG--KKFLVVLDDVWNENYNSWRALSCPFGA-----------GAFGSKIVVTHRNQ 332 (779)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdvw~~~~~~~~~l~~~l~~-----------~~~gs~IivTtR~~ 332 (779)
............ .-.+ ...++++|++..........+...+.. ......||.|+...
T Consensus 91 ~~~~~~~~~~~~----------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 91 TMIYNQHKGNFE----------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp EEEEETTTTEEE----------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred ceeecCCCCceE----------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 100000000000 0000 125899999966544433333322211 12234555565522
Q ss_pred h------hHhh-hcccc-cccCCCCChHHHHHHHHHhhc
Q 040735 333 G------VAET-MRAVS-TKTLKELSDDDCLRVLIQHSL 363 (779)
Q Consensus 333 ~------v~~~-~~~~~-~~~l~~L~~~~~~~lf~~~a~ 363 (779)
. +... ..... .+.+.+.+.++-.+++.....
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1 1111 11112 478899999999998887653
No 230
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0018 Score=68.45 Aligned_cols=181 Identities=15% Similarity=0.081 Sum_probs=93.5
Q ss_pred CCCccccchhhHHHHHHHHhc----CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC
Q 040735 183 NEAEVYGREKDKEAIVELLLR----DDS---RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD 255 (779)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 255 (779)
.-.++.|-++.+++|.+.+.- .+. -+-..++-|.++|++|+|||.||+++++. ....| +.++.+.-.
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~- 253 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELI- 253 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGC-
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhh-
Confidence 335688899888888776532 100 01234577899999999999999999973 33333 222222111
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh--------------hhhhhhcccCC--CC
Q 040735 256 VFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY--------------NSWRALSCPFG--AG 319 (779)
Q Consensus 256 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--------------~~~~~l~~~l~--~~ 319 (779)
... .......+.......-...+++|++|++..-.. .....+...+. ..
T Consensus 254 -------------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 254 -------------QKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp -------------CSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred -------------hcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 000 111111112222222245689999999843100 00111211111 12
Q ss_pred CCCcEEEEEcCchhhHhh-h-c---ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh
Q 040735 320 AFGSKIVVTHRNQGVAET-M-R---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 389 (779)
Q Consensus 320 ~~gs~IivTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P 389 (779)
..+..||.||........ + . -+..+.++..+.++-.++|..+.-.-.. ...-+ ...|++.+.|.-
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCCC----HHHHHHHCCSCC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCCC
Confidence 234567777766543321 1 1 1245778877888888888766532211 11112 345667777653
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.82 E-value=0.016 Score=67.00 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=96.6
Q ss_pred CccccchhhHHHHHHHHh----cCC---CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHH
Q 040735 185 AEVYGREKDKEAIVELLL----RDD---SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVF 257 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~----~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 257 (779)
.++.|-++.+++|.+++. ..+ .-+-..++-|.++|++|+|||+||+++++. ...+| +.++.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH------
Confidence 457888888888877653 111 012234678999999999999999999984 33333 233221
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh------hh-----hhhhcccCCC--CCCCcE
Q 040735 258 RVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY------NS-----WRALSCPFGA--GAFGSK 324 (779)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~------~~-----~~~l~~~l~~--~~~gs~ 324 (779)
+ +. ... .......+...+.......+.+|+||++..-.. .. ..++...+.. ...+..
T Consensus 273 ~----l~----sk~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 E----IM----SKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp H----HH----SSC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred H----hh----ccc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 1 11 111 122233344444444567899999999943110 00 1111111111 112345
Q ss_pred EEEEcCchhhH-hhhc----ccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh
Q 040735 325 IVVTHRNQGVA-ETMR----AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 389 (779)
Q Consensus 325 IivTtR~~~v~-~~~~----~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P 389 (779)
||.||...... ..+. -...+.+...+.++-.++|..+...... ...-+ ...|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCC
Confidence 56666654322 2221 2346788888888888888765432111 11112 445777888764
No 232
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.81 E-value=0.0006 Score=70.30 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=30.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 190 REKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 190 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+...++.+.+++..... .....+.|+|++|+|||+||..+++.
T Consensus 133 ~~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34445556666654321 12367889999999999999999873
No 233
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.76 E-value=0.0065 Score=66.59 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=35.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 186 EVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.++|++..++.+...+... .-|.++|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4789999998888887654 36889999999999999999873
No 234
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.76 E-value=0.00089 Score=68.10 Aligned_cols=67 Identities=18% Similarity=0.324 Sum_probs=44.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEe--CCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCV--FEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQL 289 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 289 (779)
.+++.|+|++|+|||+||.++... .-..++|++. .+..+. ...+.+...+.+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-----------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-----------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-----------------CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-----------------hhcCHHHHHHHHHHHH
Confidence 367789999999999999999863 1123456766 332110 1134555666666666
Q ss_pred CCCeEEEEEeCC
Q 040735 290 SGKKFLVVLDDV 301 (779)
Q Consensus 290 ~~k~~LlVlDdv 301 (779)
...+ +||+|++
T Consensus 181 ~~~~-LLVIDsI 191 (331)
T 2vhj_A 181 LQHR-VIVIDSL 191 (331)
T ss_dssp HHCS-EEEEECC
T ss_pred hhCC-EEEEecc
Confidence 5555 9999999
No 235
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.62 E-value=0.0049 Score=73.06 Aligned_cols=49 Identities=24% Similarity=0.379 Sum_probs=37.3
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 186 EVYGREKDKEAIVELLLRDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++|.+..++.+...+..... ........+.|+|++|+|||++|+.+.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 579999999988888754311 0122346889999999999999999986
No 236
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.46 E-value=0.0062 Score=71.41 Aligned_cols=50 Identities=24% Similarity=0.350 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 185 AEVYGREKDKEAIVELLLRDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 3588999998888877753211 0122345789999999999999999987
No 237
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.30 E-value=0.0029 Score=64.71 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578889999999999999999973
No 238
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.26 E-value=0.0087 Score=62.40 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=54.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCT----DKDDLNLLQEKLK 286 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 286 (779)
.-+++.|.|++|+||||||.++..... ..=..++|++....++.. .+++++..... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 347999999999999999999886322 111246788877766654 34444432111 2345666666666
Q ss_pred HHhC-CCeEEEEEeCCc
Q 040735 287 KQLS-GKKFLVVLDDVW 302 (779)
Q Consensus 287 ~~l~-~k~~LlVlDdvw 302 (779)
..++ .+.-++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5553 456689999983
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.21 E-value=0.025 Score=66.20 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=83.2
Q ss_pred CCccccchhhHHHHHHHHhcC----C---CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCH
Q 040735 184 EAEVYGREKDKEAIVELLLRD----D---SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDV 256 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 256 (779)
-.+++|.+..+++|.+++... . .-.-.....|.|+|++|+||||||+.+... ....| +.++...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH----
Confidence 356899999999988887530 0 001123457899999999999999999873 22222 2232211
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCcCCCh------h-----hhhhhcccCCC--CCCCc
Q 040735 257 FRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVWNENY------N-----SWRALSCPFGA--GAFGS 323 (779)
Q Consensus 257 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~------~-----~~~~l~~~l~~--~~~gs 323 (779)
+.... .......+...+.......+.++++|++..-.. . ....+...+.. ...+.
T Consensus 274 ----------l~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 274 ----------IMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ----------HSSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred ----------hhhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 11110 111112222333333345678999999932110 0 01111111111 11244
Q ss_pred EEEEEcCchhhH-hhhc----ccccccCCCCChHHHHHHHHHhh
Q 040735 324 KIVVTHRNQGVA-ETMR----AVSTKTLKELSDDDCLRVLIQHS 362 (779)
Q Consensus 324 ~IivTtR~~~v~-~~~~----~~~~~~l~~L~~~~~~~lf~~~a 362 (779)
.+|.||...... ..+. -...+.+...+.++-.+++...+
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 566666654221 1111 12356778888888888887654
No 240
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.09 E-value=0.034 Score=60.79 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=87.6
Q ss_pred CCccccchhhHHHHHHHHh---cCC---CCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHH
Q 040735 184 EAEVYGREKDKEAIVELLL---RDD---SRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVF 257 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~---~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 257 (779)
..+++|.+..++++.+... ... .-+-.-.+-+.|+|++|+|||+||+.++... ... .+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~~---~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RVP---FITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCC---EEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC---EEEEehhHHHH--
Confidence 3468999887776665543 110 0000112348999999999999999998732 211 23333221100
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC----CCeEEEEEeCCcCCC----------hhh----hhhhcccCCCC
Q 040735 258 RVSKLILNSIASDQCTDKDDLNLLQEKLKKQLS----GKKFLVVLDDVWNEN----------YNS----WRALSCPFGAG 319 (779)
Q Consensus 258 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdvw~~~----------~~~----~~~l~~~l~~~ 319 (779)
.. .......++..++ ..+.++++|++..-. ... ...+...+...
T Consensus 103 ------------~~------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 ------------MF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp ------------SC------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred ------------hh------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 00 0011122333332 245899999994311 011 12222222221
Q ss_pred --CCCcEEEEEcCchhhHhh-h----cccccccCCCCChHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCCh
Q 040735 320 --AFGSKIVVTHRNQGVAET-M----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 389 (779)
Q Consensus 320 --~~gs~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G~P 389 (779)
..+..++.||........ . .-...+.+...+.++-.+++..++-... ...... ...|+..+.|+.
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHHH----HHHHHHhcCCCC
Confidence 123455556666544321 1 1224677888888888888876542211 111111 334666777765
No 241
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.02 E-value=0.0074 Score=53.12 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=39.3
Q ss_pred cEEEecCCCCC--ccCccccCCCccceEecccccccccccc-cccccccceeeccCCc
Q 040735 601 RVFSLHGYHIS--KLPNEIGNLKHLRFLNLSRTNIQILPES-INSLYNLHTILLEDCR 655 (779)
Q Consensus 601 ~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~n~i~~lp~~-~~~L~~L~~L~l~~~~ 655 (779)
..++.+++.++ .+|..+. .+|++|+|++|+|+.||.. |..+.+|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36777888887 7776543 4688888888888888664 5677788888888773
No 242
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.02 E-value=0.02 Score=59.89 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=52.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc----ccCceEEEEeCCCCCHHHHHHHHHHHhhcCC-----------CCCc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQR----HFQIKSWTCVFEDFDVFRVSKLILNSIASDQ-----------CTDK 275 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----------~~~~ 275 (779)
.-.++.|+|++|+||||||..++....... .-..++|++....++...+.. ++..++... ....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 447999999999999999998876321111 123578998888777765543 344443211 0011
Q ss_pred ccHHHHHHHHHHHhC---CCeEEEEEeCC
Q 040735 276 DDLNLLQEKLKKQLS---GKKFLVVLDDV 301 (779)
Q Consensus 276 ~~~~~~~~~l~~~l~---~k~~LlVlDdv 301 (779)
....++...+...+. .+.-+||+|.+
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 222233333444432 45668888887
No 243
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.99 E-value=0.029 Score=56.50 Aligned_cols=48 Identities=25% Similarity=0.262 Sum_probs=30.7
Q ss_pred CccccchhhHHHHHHHHhc----------CCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 185 AEVYGREKDKEAIVELLLR----------DDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~----------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.++.|-++.++.|.+.+.. -.- ..... +.|+|++|+||||||+.++..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l--~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGL--VTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTC--CCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC--CCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 3466777766666654321 010 11122 899999999999999999873
No 244
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.97 E-value=0.019 Score=58.10 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=53.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccc--CceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHH-HHHHH
Q 040735 214 VISIKGLGGVGKTTLAQLVYQDDRVQRHF--QIKSWTCVFEDFDVFRVSKLILNSIASDQCT----DKDDLNLL-QEKLK 286 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~-~~~l~ 286 (779)
++-|.|++|+|||||+.+++.. ....+ ..++|++..+.++.. .+++++..... ...+.++. .+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 6899999999999999888763 22222 357899888887764 25566543221 23455555 44333
Q ss_pred HH--h-CCCeEEEEEeCCc
Q 040735 287 KQ--L-SGKKFLVVLDDVW 302 (779)
Q Consensus 287 ~~--l-~~k~~LlVlDdvw 302 (779)
.. + .++.-++|+|-+-
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 32 3 4578899999983
No 245
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.92 E-value=0.014 Score=57.58 Aligned_cols=89 Identities=11% Similarity=0.035 Sum_probs=50.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccc----ccCceEEEEeCCCCCHHHHHHHHHHHhhcCCC----C----CcccHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQR----HFQIKSWTCVFEDFDVFRVSKLILNSIASDQC----T----DKDDLN 279 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~----~~~~~~ 279 (779)
-.++.|+|++|+|||||+..+........ .-..++|++....++...+. .+++.++.... . ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 36999999999999999999876321111 12467888877655554432 33344432110 0 111222
Q ss_pred H---HHHHHHHHhC-CCeEEEEEeCC
Q 040735 280 L---LQEKLKKQLS-GKKFLVVLDDV 301 (779)
Q Consensus 280 ~---~~~~l~~~l~-~k~~LlVlDdv 301 (779)
+ ....+.+.+. .+.-+||+|.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 2 2233444443 46778999988
No 246
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.91 E-value=0.018 Score=60.50 Aligned_cols=83 Identities=20% Similarity=0.168 Sum_probs=54.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCC----CCcccHHHHHHHHHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQC----TDKDDLNLLQEKLKK 287 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~~ 287 (779)
-+++.|.|.+|+||||||.++.... ...=..++|++....++.. ..+.++.... ....+.+++.+.+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3688999999999999998887632 2222367899988776654 1334433211 023456666666766
Q ss_pred HhC-CCeEEEEEeCC
Q 040735 288 QLS-GKKFLVVLDDV 301 (779)
Q Consensus 288 ~l~-~k~~LlVlDdv 301 (779)
..+ ++.-+||+|.+
T Consensus 147 l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHTTTCCSEEEEECT
T ss_pred HHhcCCCCEEEEeCh
Confidence 654 34569999998
No 247
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.84 E-value=0.0054 Score=57.64 Aligned_cols=114 Identities=17% Similarity=0.093 Sum_probs=58.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCC---CCHHHHHHHHHHHhhc-------CCCCCc-------
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFED---FDVFRVSKLILNSIAS-------DQCTDK------- 275 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~il~~l~~-------~~~~~~------- 275 (779)
..|.|++..|.||||.|-...- +...+=..+.++..... .....++ +.+.. ...-..
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHHH
Confidence 4667777778999999976654 22222112333433322 2222333 33310 000001
Q ss_pred ccHHHHHHHHHHHhCCCeE-EEEEeCCcC---CChhhhhhhcccCCCCCCCcEEEEEcCch
Q 040735 276 DDLNLLQEKLKKQLSGKKF-LVVLDDVWN---ENYNSWRALSCPFGAGAFGSKIVVTHRNQ 332 (779)
Q Consensus 276 ~~~~~~~~~l~~~l~~k~~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 332 (779)
..........++.+.+.+| |||||++-. -.....+++...+........||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1122334455666655555 999999821 11233344555554455567899999985
No 248
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.78 E-value=0.01 Score=56.80 Aligned_cols=43 Identities=30% Similarity=0.354 Sum_probs=33.5
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 189 GREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.|++.++.+.+.+.... .....+|+|.|+.|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35567788888876542 23458999999999999999998875
No 249
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.69 E-value=0.025 Score=58.63 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=53.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccc----cCceEEEEeCCCCCHHHHHHHHHHHhhcCCC--------CCcccHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRH----FQIKSWTCVFEDFDVFRVSKLILNSIASDQC--------TDKDDLN 279 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~~ 279 (779)
-.++.|+|++|+||||||.+++........ -..++|++....++...+. .+++.++.... ....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 368999999999999999988753211111 2357899888877776654 33444432210 0111222
Q ss_pred ---HHHHHHHHHhC--CCeEEEEEeCC
Q 040735 280 ---LLQEKLKKQLS--GKKFLVVLDDV 301 (779)
Q Consensus 280 ---~~~~~l~~~l~--~k~~LlVlDdv 301 (779)
++...+...+. .+.-+||+|.+
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 23344444443 45678888887
No 250
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.68 E-value=0.022 Score=59.47 Aligned_cols=84 Identities=21% Similarity=0.146 Sum_probs=53.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCT----DKDDLNLLQEKLKK 287 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~~ 287 (779)
-+++.|.|++|+||||||.++..... ..=..++|++....++.. ..+.++..... ...+.++..+.+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 46899999999999999998875322 122357888887766653 23344322110 22345666665655
Q ss_pred HhC-CCeEEEEEeCCc
Q 040735 288 QLS-GKKFLVVLDDVW 302 (779)
Q Consensus 288 ~l~-~k~~LlVlDdvw 302 (779)
... .+.-+||+|.+-
T Consensus 134 l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHTTTCCSEEEEECGG
T ss_pred HHhcCCCCEEEEcChH
Confidence 553 456699999983
No 251
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.57 E-value=0.006 Score=59.13 Aligned_cols=113 Identities=9% Similarity=-0.073 Sum_probs=60.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC-CcccHHHHHHHHHHHhC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCT-DKDDLNLLQEKLKKQLS 290 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~ 290 (779)
-.++.|+|..|+||||++..+... ...+-..++.+..... .. ....++..++..... ......++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 478899999999999999877663 2222222333322221 11 111233333322111 11233455555655554
Q ss_pred CC-eEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCch
Q 040735 291 GK-KFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQ 332 (779)
Q Consensus 291 ~k-~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 332 (779)
+. .-+||+|.+..-..+..+.+.. +.. .|..||+|-+..
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 44 4499999996533333333322 222 267899998854
No 252
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.44 E-value=0.066 Score=54.23 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=43.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccc-ccCceEEEEeCCCCCHHHHHHHHHHHh------hcCCCCCcccHHHHH
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQDDRVQR-HFQIKSWTCVFEDFDVFRVSKLILNSI------ASDQCTDKDDLNLLQ 282 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~il~~l------~~~~~~~~~~~~~~~ 282 (779)
....+|+|+|+.|+||||||+.+........ ....+..|+...-+-.......+.... .........+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4578999999999999999998876322111 122333334333222233333332221 100112455667777
Q ss_pred HHHHHHhCC
Q 040735 283 EKLKKQLSG 291 (779)
Q Consensus 283 ~~l~~~l~~ 291 (779)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 766665444
No 253
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.40 E-value=0.012 Score=51.72 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=45.3
Q ss_pred ceEeccccccc--ccccccccccccceeeccCCcchhhchhh-hcCccccceeecCCCc
Q 040735 624 RFLNLSRTNIQ--ILPESINSLYNLHTILLEDCRRLKKLCKN-MGNLMKLHHLRNPNVH 679 (779)
Q Consensus 624 ~~L~l~~n~i~--~lp~~~~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 679 (779)
..++.++++++ .+|..+. .+|++|+|++| .+..+|.+ |..+++|++|+|.+|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 47889999998 9997653 36999999999 88889876 6789999999999997
No 254
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.38 E-value=0.028 Score=58.21 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=53.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc---------cc-----CceEEEEeCCCCCHHHHHHHHHHHhhcCCC----
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQR---------HF-----QIKSWTCVFEDFDVFRVSKLILNSIASDQC---- 272 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---- 272 (779)
.-.++.|+|.+|+|||+||.+++....... .. ..++|++....++...+.. +++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 347999999999999999998875321111 11 3678898888877766553 3444432210
Q ss_pred ----CCcccHH---HHHHHHHHHhC--CCeEEEEEeCC
Q 040735 273 ----TDKDDLN---LLQEKLKKQLS--GKKFLVVLDDV 301 (779)
Q Consensus 273 ----~~~~~~~---~~~~~l~~~l~--~k~~LlVlDdv 301 (779)
....+.+ ++...+...+. .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 23344444443 35568888887
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.37 E-value=0.027 Score=58.83 Aligned_cols=83 Identities=22% Similarity=0.169 Sum_probs=51.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCT----DKDDLNLLQEKLKK 287 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~~ 287 (779)
-+++.|.|.+|+||||||.++..... ..=..++|++....++... +..++..... ...+.+++.+.++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 46899999999999999998876322 2223578898887776432 3344322110 12344555555544
Q ss_pred Hh-CCCeEEEEEeCC
Q 040735 288 QL-SGKKFLVVLDDV 301 (779)
Q Consensus 288 ~l-~~k~~LlVlDdv 301 (779)
.. ..+.-+||+|.+
T Consensus 136 l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 136 LARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHTCCSEEEEECG
T ss_pred HHhccCCCEEEEcCH
Confidence 43 244558999998
No 256
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.20 E-value=0.037 Score=56.36 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+++|+|++|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999998875
No 257
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.03 E-value=0.17 Score=52.70 Aligned_cols=157 Identities=11% Similarity=-0.054 Sum_probs=94.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhC
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLKK-QLS 290 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~ 290 (779)
..+..++|+.|.||++.++.+..... ...|+....+.+....+ ..++.+.+.. -+-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~----------------------~~~l~~~~~~~plf 74 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTD----------------------WNAIFSLCQAMSLF 74 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCC----------------------HHHHHHHHHHHHHC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCC----------------------HHHHHHHhcCcCCc
Confidence 36889999999999999988876321 12332211122222222 3333333221 134
Q ss_pred CCeEEEEEeCCcC-CChhhhhhhcccCCCCCCCcEEEEEcCc-------hhhHhhhc-ccccccCCCCChHHHHHHHHHh
Q 040735 291 GKKFLVVLDDVWN-ENYNSWRALSCPFGAGAFGSKIVVTHRN-------QGVAETMR-AVSTKTLKELSDDDCLRVLIQH 361 (779)
Q Consensus 291 ~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~IivTtR~-------~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 361 (779)
+++-++|+|++.. .....++.+...+....+++.+|++|.. ..+...+. ....++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5677889999865 4445666676666554456777766543 23443332 3357888999999988877776
Q ss_pred hcCCCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 040735 362 SLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 395 (779)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 395 (779)
+-.... .-..+.+..|++.++|....+...
T Consensus 155 ~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 532211 112366788999999998877654
No 258
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.02 E-value=0.022 Score=60.87 Aligned_cols=122 Identities=13% Similarity=0.158 Sum_probs=61.4
Q ss_pred cccccccceeeccCCcchhhchhhhcCccccceeecCCCcccccCCc-ccCCCCCCcccCcee-eCCCCCCCchhhhccc
Q 040735 640 INSLYNLHTILLEDCRRLKKLCKNMGNLMKLHHLRNPNVHSLEEMPK-GFGKLTCLLTLSRFV-VGKDSGSGLRELKSLM 717 (779)
Q Consensus 640 ~~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L~~~~-~~~~~~~~~~~L~~L~ 717 (779)
+..+.+|+.+.+..+ ....-...+..+.+|+.+....+. +|. .+....+|+.+.+.. +....... +.+++
T Consensus 249 f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~i~~I~~~a---F~~c~ 320 (394)
T 4fs7_A 249 FYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDSVKFIGEEA---FESCT 320 (394)
T ss_dssp TTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTTCCEECTTT---TTTCT
T ss_pred ccccccceeEEcCCC-cceeeccccccccccceeccCcee----eccccccccccccccccccccceechhh---hcCCC
Confidence 344455555555543 221112234555555555544332 222 245556666554211 11111223 34444
Q ss_pred cccceeEEcccCCCCCcchhhhccCCCCCCCchHHH--Hh--ccCCCCCCCCeEEEeec
Q 040735 718 HLQGTLQISKLENVKDVGDASEAQLNTKPDFKIEIR--VL--DMLKPHQKLEELTIAGY 772 (779)
Q Consensus 718 ~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~~~--~l--~~l~~~~~L~~L~l~~~ 772 (779)
+|+ .+.+. +.+..+....|.+..+|+.+....+ .+ ..+..+++|+++.|..+
T Consensus 321 ~L~-~i~lp--~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 321 SLV-SIDLP--YLVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCC-EECCC--TTCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCC-EEEeC--CcccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC
Confidence 555 55553 2455666777888888887744322 11 23566889999998653
No 259
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.00 E-value=0.034 Score=59.36 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=37.6
Q ss_pred CCCCccEEEecCCCCCccC-ccccCCCccceEeccccccccccc-ccccccccceeeccCCcchhhchh-hhcCccccce
Q 040735 596 NLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKLCK-NMGNLMKLHH 672 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~ 672 (779)
+++.|+.+.+. +.++.++ ..|.++.+|+.+.|..+ ++.++. .|.++.+|+.+.+..+ +..++. .|.++++|+.
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCE
T ss_pred cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCE
Confidence 45555555553 2344443 33455555555555432 444422 3445555555555432 333432 3455555555
Q ss_pred eecCCC
Q 040735 673 LRNPNV 678 (779)
Q Consensus 673 L~l~~~ 678 (779)
+++.++
T Consensus 362 i~~~~~ 367 (394)
T 4gt6_A 362 IEYSGS 367 (394)
T ss_dssp EEESSC
T ss_pred EEECCc
Confidence 555544
No 260
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.94 E-value=0.066 Score=52.09 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=30.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccc---cc-ccCceEEEEeCCCCCH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRV---QR-HFQIKSWTCVFEDFDV 256 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~~~~~~~~ 256 (779)
-.+++|+|++|+|||||++.+...... .. .-...+|+.....+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 479999999999999999998752111 11 1234677766554443
No 261
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.86 E-value=0.049 Score=56.93 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=50.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccc----CceEEEEeCCCCCHHHHHHHHHHHhhcCC-----------CCCc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHF----QIKSWTCVFEDFDVFRVSKLILNSIASDQ-----------CTDK 275 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----------~~~~ 275 (779)
.-.++.|+|++|+|||||+..++......... ..++|++....+....+ ..+.+...... ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 44799999999999999999987632111111 13488887665543333 23333322110 0011
Q ss_pred ccHHHHHHHHHHHhC------CCeEEEEEeCCc
Q 040735 276 DDLNLLQEKLKKQLS------GKKFLVVLDDVW 302 (779)
Q Consensus 276 ~~~~~~~~~l~~~l~------~k~~LlVlDdvw 302 (779)
....++...+...+. .++-+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 112233444444443 467799999883
No 262
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.83 E-value=0.029 Score=56.95 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 192 KDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 192 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+++++..++.... ......+|.|.|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 14 NRLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344445555444332 334568999999999999999999875
No 263
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.81 E-value=0.014 Score=54.16 Aligned_cols=20 Identities=45% Similarity=0.763 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 040735 213 SVISIKGLGGVGKTTLAQLV 232 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v 232 (779)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 264
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.81 E-value=0.017 Score=54.55 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999873
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.77 E-value=0.022 Score=54.69 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=27.8
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 193 DKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 193 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
-+++|.+.+... .....+|+|+|+.|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555432 13457999999999999999998876
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.77 E-value=0.014 Score=54.36 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999886
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.67 E-value=0.015 Score=53.88 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|+|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 268
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.64 E-value=0.036 Score=59.17 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=46.8
Q ss_pred CCCCccEEEecCCCCCccCccccCCCccceEeccccccccccc-ccccccccceeeccCCcchhhchh-hhcCcccccee
Q 040735 596 NLPRLRVFSLHGYHISKLPNEIGNLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKLCK-NMGNLMKLHHL 673 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L 673 (779)
++..|+.+.+..+.+.. ..|..+.+|+.+.+..+ ++.++. .|.++.+|+.+++..+ +..++. .|.++++|+.+
T Consensus 274 ~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 274 NCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp TCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEE
T ss_pred cccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEE
Confidence 45555555554432211 23445555666655443 444432 3555566666666432 444433 35556666666
Q ss_pred ecCCCcccccCCc-ccCCCCCCcccC
Q 040735 674 RNPNVHSLEEMPK-GFGKLTCLLTLS 698 (779)
Q Consensus 674 ~l~~~~~~~~~p~-~~~~L~~L~~L~ 698 (779)
.+..+ +..++. .|.++++|+.+.
T Consensus 349 ~lp~~--l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 349 NFPLS--LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CCCTT--CCEECTTTBTTCTTCCEEE
T ss_pred EECcc--ccEehHHHhhCCCCCCEEE
Confidence 65443 233332 255555555553
No 269
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.64 E-value=0.017 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999886
No 270
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.61 E-value=0.034 Score=57.07 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=33.2
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 187 VYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
++|....+..+...+.... ....+.+|+|.|+.|+|||||++.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455555665665555443 235678999999999999999998865
No 271
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.53 E-value=0.13 Score=52.94 Aligned_cols=51 Identities=12% Similarity=0.056 Sum_probs=35.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNS 266 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~ 266 (779)
-.++.|.|.+|+||||||..++.+..... ..++|++.. .+..++...++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 36899999999999999998875432222 456777655 4566666666554
No 272
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.50 E-value=0.018 Score=54.93 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|.|+|++|+||||+|+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 273
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.44 E-value=0.022 Score=53.36 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
++++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999876
No 274
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.43 E-value=0.016 Score=54.35 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
|.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999875
No 275
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.40 E-value=0.03 Score=59.09 Aligned_cols=49 Identities=31% Similarity=0.385 Sum_probs=35.3
Q ss_pred ccccchhhHHHHHHHHhc-------CC--CCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 186 EVYGREKDKEAIVELLLR-------DD--SRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~-------~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++|.+..++.+...+.. .. .........+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 368999888888887721 00 00112345788999999999999999987
No 276
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.40 E-value=0.079 Score=56.22 Aligned_cols=56 Identities=14% Similarity=0.031 Sum_probs=35.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccc----ccccCceEEEEeCCCCCHHHHHHHHHHHhh
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRV----QRHFQIKSWTCVFEDFDVFRVSKLILNSIA 268 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 268 (779)
-.++.|+|++|+|||||+..++-.... ...-..++|++....+....+ +.+.+.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 369999999999999999976521111 112235788887776665543 33444443
No 277
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.40 E-value=0.032 Score=55.46 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 192 KDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 192 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+.+...+..... ......+|.|+|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344455555554432 344568999999999999999999876
No 278
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.38 E-value=0.19 Score=53.47 Aligned_cols=124 Identities=12% Similarity=0.189 Sum_probs=68.3
Q ss_pred ccccccccceeeccCCcchhhchh-hhcCccccceeecCCCcccccCCcc-cCCCCCCcccCcee-eCCCCCCCchhhhc
Q 040735 639 SINSLYNLHTILLEDCRRLKKLCK-NMGNLMKLHHLRNPNVHSLEEMPKG-FGKLTCLLTLSRFV-VGKDSGSGLRELKS 715 (779)
Q Consensus 639 ~~~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~-~~~~~~~~~~~L~~ 715 (779)
.|.++.+|+.+.+..+ +..++. .+.++.+|+.+.+..+ +..++.. |.++++|+.+.+-. +....... +.+
T Consensus 260 aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~a---F~~ 332 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEGITQILDDA---FAG 332 (394)
T ss_dssp TTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCEECTTT---TTT
T ss_pred eeeecccccEEecccc--cceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCcccEehHhH---hhC
Confidence 4566777888887654 334433 4677888888887643 4556544 66777887765321 11111223 444
Q ss_pred cccccceeEEcccCCCCCcchhhhccCCCCCCCchH--HHHhccCCCCCCCCeEEEeec
Q 040735 716 LMHLQGTLQISKLENVKDVGDASEAQLNTKPDFKIE--IRVLDMLKPHQKLEELTIAGY 772 (779)
Q Consensus 716 L~~L~~~L~i~~~~~~~~~~~~~~~~L~~l~~L~~~--~~~l~~l~~~~~L~~L~l~~~ 772 (779)
+++|+ .+.+- .++..+....|.+..+|+.+... ......+..+.+|+.+.+..+
T Consensus 333 C~~L~-~i~ip--~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 333 CEQLE-RIAIP--SSVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CTTCC-EEEEC--TTCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC--------
T ss_pred CCCCC-EEEEC--cccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCC
Confidence 55555 56563 24556677778888888877322 223345666778888887654
No 279
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.38 E-value=0.026 Score=53.85 Aligned_cols=23 Identities=48% Similarity=0.559 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|+|+|++|+||||+++.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999999886
No 280
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.34 E-value=0.033 Score=57.82 Aligned_cols=53 Identities=17% Similarity=-0.083 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc-cccCceEEEEeCCCC
Q 040735 196 AIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQ-RHFQIKSWTCVFEDF 254 (779)
Q Consensus 196 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~ 254 (779)
++++.+..-. +-..++|+|++|+|||||++.+.+..... ..+. ++++-+.+..
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 4555554432 22478999999999999999887632111 1222 3456666554
No 281
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.26 E-value=0.11 Score=54.98 Aligned_cols=98 Identities=17% Similarity=0.284 Sum_probs=54.9
Q ss_pred CCCCccEEEecCCCCCccC-ccccCCCccceEeccccccccccc-ccccccccceeeccCCcchhhchh-hhcCccccce
Q 040735 596 NLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPE-SINSLYNLHTILLEDCRRLKKLCK-NMGNLMKLHH 672 (779)
Q Consensus 596 ~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~ 672 (779)
++..|+.+.+..+ ++.+. ..|.++.+|+.+.+..+ ++.++. .|.++.+|+.+.+.++ .+..++. .|.++.+|+.
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCE
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccccc-ccceehhhhhcCCCCCCE
Confidence 5666666666554 44443 44556666666666433 445543 3556666777766655 4555543 3566666776
Q ss_pred eecCCCcccccCCc-ccCCCCCCcccC
Q 040735 673 LRNPNVHSLEEMPK-GFGKLTCLLTLS 698 (779)
Q Consensus 673 L~l~~~~~~~~~p~-~~~~L~~L~~L~ 698 (779)
+.+..+ +..++. .|.++++|+.+.
T Consensus 315 i~lp~~--l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 315 VTLPTA--LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCCCC
T ss_pred EEcCcc--ccEEHHHHhhCCCCCCEEE
Confidence 666543 334433 255555666554
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.22 E-value=0.019 Score=53.22 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|+|+|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 283
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.21 E-value=0.026 Score=53.38 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999876
No 284
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.19 E-value=0.033 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+++|+|++|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999875
No 285
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.14 E-value=0.022 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 286
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.12 E-value=0.045 Score=54.41 Aligned_cols=51 Identities=29% Similarity=0.298 Sum_probs=32.5
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSR------ADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.+++|.+..+.++.+....-... +-.-.+-+.|+|++|+||||||+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46889887666665543211000 0001122899999999999999999873
No 287
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.10 E-value=0.09 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++.|+|++|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999885
No 288
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.09 E-value=0.028 Score=54.03 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..+++|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999863
No 289
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.06 E-value=0.027 Score=53.70 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|+|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 290
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.03 E-value=0.023 Score=54.32 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|+|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 291
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.01 E-value=0.026 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 36899999999999999997553
No 292
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.95 E-value=0.031 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999875
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.95 E-value=0.028 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 294
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.89 E-value=0.041 Score=52.74 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+|+|+|++|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 295
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.88 E-value=0.16 Score=54.35 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+.+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988865
No 296
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.88 E-value=0.058 Score=55.68 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=31.4
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 188 YGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
|+-+.-.+.+.+.+...-. .+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3445556666666643221 23456789999999999999998876
No 297
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.88 E-value=0.038 Score=53.23 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...++|.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999886
No 298
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.86 E-value=0.025 Score=53.23 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999886
No 299
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.85 E-value=0.033 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999974
No 300
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.83 E-value=0.023 Score=59.59 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=32.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..++|.+..++.+...+.... ..-+.|+|++|+|||++|+.+.+
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 458999886666544443221 12388999999999999999986
No 301
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.80 E-value=0.12 Score=52.57 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=46.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHH--HHHHHHHHHhhcCCC--CCcccHHHH-HHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVF--RVSKLILNSIASDQC--TDKDDLNLL-QEKL 285 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~il~~l~~~~~--~~~~~~~~~-~~~l 285 (779)
...++.|+|++|+||||++..+..... ..=..+.++.. +.+... +-+...++..+.... ....+...+ .+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 458999999999999999998876322 11112334433 233221 222334444332211 012222222 2344
Q ss_pred HHHhCCCeEEEEEeCCc
Q 040735 286 KKQLSGKKFLVVLDDVW 302 (779)
Q Consensus 286 ~~~l~~k~~LlVlDdvw 302 (779)
...+..+.-++|+|-.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 44444455578888763
No 302
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.78 E-value=0.039 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+..+|+|.|++|+||||+|+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 303
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.77 E-value=0.29 Score=52.55 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 193 DKEAIVELLLRDDS---RADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 193 ~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
-.+++.+++..... ......++|.|+|.+|+||||++..+..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556666643221 0124578999999999999999988875
No 304
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.75 E-value=0.036 Score=53.25 Aligned_cols=24 Identities=46% Similarity=0.392 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999876
No 305
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.75 E-value=0.036 Score=52.85 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999886
No 306
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.72 E-value=0.031 Score=52.25 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++|.|.|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46788999999999999999875
No 307
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.72 E-value=0.028 Score=53.83 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|.|+|++|+|||||++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 308
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.71 E-value=0.11 Score=54.97 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=75.7
Q ss_pred ccccccceEecccCcccccccccchHhhhhhc-CCCCccEEEecCCCCCccC-ccccCCCccceEeccccccccccc-cc
Q 040735 564 VSDVERLRTFLPVNLSDYRRNYLAWSVLQRLL-NLPRLRVFSLHGYHISKLP-NEIGNLKHLRFLNLSRTNIQILPE-SI 640 (779)
Q Consensus 564 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~i~~lp~-~~ 640 (779)
+.++.+|+.+.+...- ..+....+ ++..|+.+.+..+ +..++ ..|.++.+|+.+.+.++.++.++. .|
T Consensus 236 f~~~~~L~~i~lp~~v--------~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF 306 (379)
T 4h09_A 236 FYGMKALDEIAIPKNV--------TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVF 306 (379)
T ss_dssp TTTCSSCCEEEECTTC--------CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTT
T ss_pred ccCCccceEEEcCCCc--------cEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhh
Confidence 4456666666554321 12233344 7889999999654 66665 568889999999999999998854 58
Q ss_pred ccccccceeeccCCcchhhchh-hhcCccccceeecCCC
Q 040735 641 NSLYNLHTILLEDCRRLKKLCK-NMGNLMKLHHLRNPNV 678 (779)
Q Consensus 641 ~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~ 678 (779)
.++.+|+.+.|..+ +..++. .|.++++|+.+.+..+
T Consensus 307 ~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 307 MDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc
Confidence 89999999999754 667755 4888999999887654
No 309
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.70 E-value=0.034 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998875
No 310
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.69 E-value=0.037 Score=52.95 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|++|+||||+++.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 311
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.69 E-value=0.038 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...|+|+|++|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 312
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.63 E-value=0.036 Score=51.67 Aligned_cols=22 Identities=45% Similarity=0.584 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988763
No 313
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.61 E-value=0.033 Score=52.44 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999886
No 314
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.56 E-value=0.035 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 315
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.51 E-value=0.039 Score=54.80 Aligned_cols=22 Identities=32% Similarity=0.231 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|.|.|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999876
No 316
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.50 E-value=0.042 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 317
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.45 E-value=0.15 Score=54.78 Aligned_cols=40 Identities=33% Similarity=0.293 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCC
Q 040735 214 VISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDF 254 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 254 (779)
.++|+|.+|+|||||++.+....... .-+..+++.+.+..
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGert 192 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERT 192 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCc
Confidence 58899999999999999988643221 12344666666554
No 318
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.44 E-value=0.069 Score=53.87 Aligned_cols=52 Identities=29% Similarity=0.268 Sum_probs=33.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 184 EAEVYGREKDKEAIVELLLRDDSR------ADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..+++|.+..++++.+....-... +-.-.+-+.|+|++|+||||||+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 346889887776666544211000 0001122899999999999999999873
No 319
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.42 E-value=0.049 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999875
No 320
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.41 E-value=0.03 Score=52.01 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 321
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.39 E-value=0.054 Score=50.83 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998863
No 322
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.38 E-value=0.033 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 323
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.37 E-value=0.038 Score=52.68 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.|+|.|++|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999886
No 324
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.37 E-value=0.23 Score=53.05 Aligned_cols=25 Identities=32% Similarity=0.202 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..++|.++|++|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999888753
No 325
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.37 E-value=0.045 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 326
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.35 E-value=0.046 Score=54.57 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 327
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.31 E-value=0.05 Score=51.44 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 347899999999999999999875
No 328
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.29 E-value=0.045 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..++++|+|+.|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999886
No 329
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.29 E-value=0.043 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|+|+|++|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999984
No 330
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.27 E-value=0.042 Score=50.63 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.23 E-value=0.04 Score=52.63 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3789999999999999999875
No 332
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.23 E-value=0.047 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|.|.|++|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 333
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.22 E-value=0.051 Score=50.96 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..|+|.|++|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 334
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.21 E-value=0.067 Score=56.67 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+.++|++|+|||++|+.+.+
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 335
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.21 E-value=0.044 Score=53.31 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|+|+|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998875
No 336
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.20 E-value=0.052 Score=55.67 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+|+|+|+.|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 457999999999999999998876
No 337
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.17 E-value=0.048 Score=54.14 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+..+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999998876
No 338
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.14 E-value=0.069 Score=52.63 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
....|+|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 339
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.13 E-value=0.033 Score=52.22 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 340
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.09 E-value=0.11 Score=49.01 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=43.6
Q ss_pred CCCCccEEEecCC-CCCc-----cCccccCCCccceEeccccccc-----ccccccccccccceeeccCCcchh-----h
Q 040735 596 NLPRLRVFSLHGY-HISK-----LPNEIGNLKHLRFLNLSRTNIQ-----ILPESINSLYNLHTILLEDCRRLK-----K 659 (779)
Q Consensus 596 ~l~~L~~L~l~~n-~l~~-----lp~~~~~l~~L~~L~l~~n~i~-----~lp~~~~~L~~L~~L~l~~~~~~~-----~ 659 (779)
+-+.|+.|+|++| .|.. +-..+..-.+|+.|+|++|.|. .|-..+..-+.|++|+|++| .++ .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHH
Confidence 4456666666664 5542 2233444456666666666665 12233334456666676666 332 2
Q ss_pred chhhhcCccccceeecCCC
Q 040735 660 LCKNMGNLMKLHHLRNPNV 678 (779)
Q Consensus 660 lp~~~~~l~~L~~L~l~~~ 678 (779)
|-..+..-+.|++|++++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 3334444456777777654
No 341
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.09 E-value=0.082 Score=49.80 Aligned_cols=110 Identities=19% Similarity=0.159 Sum_probs=67.0
Q ss_pred cccccceEecccCcccccccccch----HhhhhhcCCCCccEEEecCCCCCc-----cCccccCCCccceEecccccccc
Q 040735 565 SDVERLRTFLPVNLSDYRRNYLAW----SVLQRLLNLPRLRVFSLHGYHISK-----LPNEIGNLKHLRFLNLSRTNIQI 635 (779)
Q Consensus 565 ~~~~~Lr~l~~~~~~~~~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~i~~ 635 (779)
.+-+.|+.|.+.++.. +.. .+-..+..-+.|+.|+|++|.|.. +...+..=+.|++|+|++|.|..
T Consensus 38 ~~n~~L~~L~L~~nn~-----igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKR-----VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TTCSSCCEEECTTCCS-----SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred hcCCCccEEECCCCCC-----CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3456788887765311 222 223334455678889998888863 23444455778889998888772
Q ss_pred -----cccccccccccceeeccCCcc--hh-----hchhhhcCccccceeecCCCc
Q 040735 636 -----LPESINSLYNLHTILLEDCRR--LK-----KLCKNMGNLMKLHHLRNPNVH 679 (779)
Q Consensus 636 -----lp~~~~~L~~L~~L~l~~~~~--~~-----~lp~~~~~l~~L~~L~l~~~~ 679 (779)
|-+.+..-+.|+.|+|++|.. ++ .+-..+..-++|..|+++.|.
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 333445556688888876521 22 233445555677778776654
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.07 E-value=0.043 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 343
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.05 E-value=0.22 Score=51.35 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=35.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHh
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSI 267 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 267 (779)
.++.|.|.+|+||||+|..++.+... .=..++|++. .-+..++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 58999999999999999998764322 1124556554 445667776666543
No 344
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.99 E-value=0.053 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999875
No 345
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.98 E-value=0.06 Score=53.16 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|+|.|+.|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999998865
No 346
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.98 E-value=0.13 Score=64.74 Aligned_cols=84 Identities=23% Similarity=0.158 Sum_probs=54.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCT----DKDDLNLLQEKLK 286 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 286 (779)
+.+.+.|+|++|+|||+||.++.... ..+=..++|+++.+.++... ++.++..... .....++..+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45799999999999999999887632 22223567888877776655 3444422110 2334455555555
Q ss_pred HHh-CCCeEEEEEeCC
Q 040735 287 KQL-SGKKFLVVLDDV 301 (779)
Q Consensus 287 ~~l-~~k~~LlVlDdv 301 (779)
... ..+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 554 356779999998
No 347
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.98 E-value=0.038 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 348
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.92 E-value=0.033 Score=52.07 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=16.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 349
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.89 E-value=0.06 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+|+|.|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998875
No 350
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.88 E-value=0.068 Score=48.63 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||++.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999999999876
No 351
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.87 E-value=0.064 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|+|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 352
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.86 E-value=0.051 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 353
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.86 E-value=0.22 Score=57.54 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=57.6
Q ss_pred CCCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC
Q 040735 183 NEAEVYGREKDKEAIVELLLRDDS-------RADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD 255 (779)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 255 (779)
....+.|.++.++.|.+.+.-.-. .+-...+-|.++|++|+|||.+|+++.+. ....| +.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~f-----~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF-----ISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCEE-----EECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCce-----EEecc---
Confidence 345677888888887776543211 01223456789999999999999999983 22222 33321
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCeEEEEEeCCc
Q 040735 256 VFRVSKLILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLVVLDDVW 302 (779)
Q Consensus 256 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw 302 (779)
. +++... .......+.+.....-+..+++|+||++.
T Consensus 545 -~----~l~s~~------vGese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 545 -P----ELLTMW------FGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp -H----HHHTTT------CSSCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred -c----hhhccc------cchHHHHHHHHHHHHHHcCCceeechhhh
Confidence 1 111111 12223333333334435679999999994
No 354
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.80 E-value=0.063 Score=56.06 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=59.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHH-HHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRV-SKLILNSIASDQCTDKDDLNLLQEKLKKQLSG 291 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~-~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 291 (779)
.+++|+|+.|+|||||.+.+.... .......+ +++.++.....- ...++.+.. ...+.......+...|..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~--~~~~~~~i-~t~ed~~e~~~~~~~~~v~q~~-----~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL--NNTKYHHI-LTIEDPIEFVHESKKCLVNQRE-----VHRDTLGFSEALRSALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH--HHHCCCEE-EEEESSCCSCCCCSSSEEEEEE-----BTTTBSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc--cCCCCcEE-EEccCcHHhhhhccccceeeee-----eccccCCHHHHHHHHhhh
Confidence 599999999999999999886521 11111111 222222111000 000000000 001112334577888888
Q ss_pred CeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCchhhHh
Q 040735 292 KKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRNQGVAE 336 (779)
Q Consensus 292 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~ 336 (779)
.+=+|++|...+ .+.+..+.... ..|..||+||-....+.
T Consensus 196 ~PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 196 DPDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred CcCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 899999999953 44554443332 23566888887765543
No 355
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.80 E-value=0.063 Score=54.75 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+++|+|++|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346999999999999999998875
No 356
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.79 E-value=0.055 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 357
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.78 E-value=0.049 Score=52.74 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 358
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.77 E-value=0.055 Score=49.74 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 359
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.71 E-value=0.054 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|+|.|++|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 360
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.71 E-value=0.061 Score=52.02 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
-.+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 36999999999999999999876
No 361
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.67 E-value=0.056 Score=50.98 Aligned_cols=21 Identities=43% Similarity=0.801 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 362
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.66 E-value=0.084 Score=49.79 Aligned_cols=38 Identities=13% Similarity=0.047 Sum_probs=27.5
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 193 DKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 193 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
-+..+..++... +....+.|+|++|+||||+|..+++.
T Consensus 44 f~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 355666666431 22356899999999999999888763
No 363
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.65 E-value=0.07 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHh
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVY 233 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~ 233 (779)
...+|+|.|++|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999887
No 364
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.57 E-value=0.34 Score=52.06 Aligned_cols=52 Identities=21% Similarity=0.126 Sum_probs=36.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC-HHHHHHHHHH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD-VFRVSKLILN 265 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~ 265 (779)
.-++|.|.+|+|||+|+.++.+... +.+-+.++++-+.+... ..++..++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTT-TTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHH-hhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 3579999999999999999887321 22346778888877664 4455555554
No 365
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.55 E-value=0.1 Score=50.51 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
....|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4588999999999999999998864
No 366
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.54 E-value=0.32 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999886
No 367
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.50 E-value=0.071 Score=54.66 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=21.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
++.+||+|.|-|||||||.+-.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3569999999999999999977654
No 368
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.41 E-value=0.07 Score=52.94 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|+|+|+.|+||||+++.+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999984
No 369
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.41 E-value=0.064 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 370
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.36 E-value=0.15 Score=52.20 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.33 E-value=0.066 Score=50.65 Aligned_cols=21 Identities=43% Similarity=0.688 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 372
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.31 E-value=0.28 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..++.|+|++|+||||++..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998876
No 373
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.30 E-value=0.068 Score=50.90 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999886
No 374
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.26 E-value=0.11 Score=48.83 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.....|.|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998764
No 375
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.26 E-value=0.079 Score=50.90 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|.|.|++|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999876
No 376
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.24 E-value=0.059 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 377
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.22 E-value=0.068 Score=51.50 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 378
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.17 E-value=0.1 Score=50.32 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=29.0
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 190 REKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 190 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.++..+.+...+.. .+.++|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34455555555432 24589999999999999999998763
No 379
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.04 E-value=0.21 Score=51.86 Aligned_cols=36 Identities=17% Similarity=0.084 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 195 EAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 195 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
-++++.+..-. +-.-++|+|.+|+|||+|++++.+.
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHH
Confidence 35667765432 2246799999999999999988873
No 380
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.03 E-value=0.074 Score=51.26 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 381
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.01 E-value=0.041 Score=52.95 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 382
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.01 E-value=0.094 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 383
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.92 E-value=0.081 Score=52.21 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|++|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 6999999999999999998873
No 384
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.89 E-value=0.15 Score=54.49 Aligned_cols=50 Identities=26% Similarity=0.303 Sum_probs=35.2
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 185 AEVYGREKDKEAIVELLLRD--------DSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..++|.+..++.+...+... ........+-|.++|++|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35789888888887666321 000111345688999999999999999986
No 385
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.84 E-value=0.35 Score=51.76 Aligned_cols=65 Identities=23% Similarity=0.169 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCC-HHHHHHHHHHH
Q 040735 196 AIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFD-VFRVSKLILNS 266 (779)
Q Consensus 196 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~ 266 (779)
+.++.|..-. +-.-++|.|.+|+|||+|++++.+... +.+-+.++++-+.+... ..++..++...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 3556664322 224689999999999999999876321 12335567777776653 44555555543
No 386
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.83 E-value=0.076 Score=49.99 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988763
No 387
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.80 E-value=1.2 Score=48.66 Aligned_cols=41 Identities=27% Similarity=0.260 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 194 KEAIVELLLRDDSR---ADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 194 ~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++|.+.+...... ...+.++|.|+|.+|+||||++..+..
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555655432211 124578999999999999999998875
No 388
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.79 E-value=0.11 Score=58.76 Aligned_cols=43 Identities=26% Similarity=0.304 Sum_probs=35.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 185 AEVYGREKDKEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899998888888877543 37899999999999999999863
No 389
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.78 E-value=0.069 Score=51.61 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999876
No 390
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.76 E-value=0.057 Score=52.74 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=15.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHh-c
Q 040735 213 SVISIKGLGGVGKTTLAQLVY-Q 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~-~ 234 (779)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 391
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.75 E-value=0.089 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999886
No 392
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.74 E-value=0.39 Score=48.69 Aligned_cols=24 Identities=33% Similarity=0.279 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999988763
No 393
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.74 E-value=0.058 Score=49.81 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 394
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.68 E-value=0.1 Score=53.14 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+++|+|+.|+||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 347999999999999999998876
No 395
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.67 E-value=0.089 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999876
No 396
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.62 E-value=0.1 Score=48.26 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..++++|+|+.|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998863
No 397
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.60 E-value=0.09 Score=50.21 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+|.|.|++|+||+|.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999886
No 398
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.59 E-value=0.09 Score=51.05 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999886
No 399
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.51 E-value=0.13 Score=51.55 Aligned_cols=22 Identities=45% Similarity=0.478 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999875
No 400
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.51 E-value=0.12 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+++|+|+.|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999998876
No 401
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.44 E-value=0.081 Score=52.23 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 402
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.32 E-value=1.6 Score=57.13 Aligned_cols=76 Identities=12% Similarity=0.046 Sum_probs=44.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCc--ccHHHHHHHHHHHhC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDK--DDLNLLQEKLKKQLS 290 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~--~~~~~~~~~l~~~l~ 290 (779)
+-|.++|++|+|||++|+.+.... ..+ ..+.++.+...+...+.+.+-..+........ ... .-.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P---------~~~ 1334 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLP---------KSD 1334 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEE---------BSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccC---------CCC
Confidence 467899999999999997776532 122 23456777776666655554443321110000 000 004
Q ss_pred CCeEEEEEeCC
Q 040735 291 GKKFLVVLDDV 301 (779)
Q Consensus 291 ~k~~LlVlDdv 301 (779)
+++.++++||+
T Consensus 1335 gk~~VlFiDEi 1345 (2695)
T 4akg_A 1335 IKNLVLFCDEI 1345 (2695)
T ss_dssp SSCEEEEEETT
T ss_pred CceEEEEeccc
Confidence 67899999996
No 403
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.29 E-value=0.23 Score=53.52 Aligned_cols=85 Identities=22% Similarity=0.201 Sum_probs=46.6
Q ss_pred EEEEEEcCCCCcHHHHH-HHHhcccccccccC-ceEEEEeCCCCC-HHHHHHHHHHHhhc-------CCCCCcccHHH--
Q 040735 213 SVISIKGLGGVGKTTLA-QLVYQDDRVQRHFQ-IKSWTCVFEDFD-VFRVSKLILNSIAS-------DQCTDKDDLNL-- 280 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~il~~l~~-------~~~~~~~~~~~-- 280 (779)
.-++|.|.+|+|||+|| ..+.+.. .-+ .++++-+.+... ..++...+...=.. ....++.....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 35789999999999995 5677632 234 246677776654 33444444431100 01101111111
Q ss_pred --HHHHHHHHh--CCCeEEEEEeCC
Q 040735 281 --LQEKLKKQL--SGKKFLVVLDDV 301 (779)
Q Consensus 281 --~~~~l~~~l--~~k~~LlVlDdv 301 (779)
..-.+.+++ .++.+||++||+
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecH
Confidence 011223333 589999999998
No 404
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.27 E-value=0.11 Score=53.40 Aligned_cols=22 Identities=36% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999876
No 405
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.27 E-value=0.11 Score=50.60 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
No 406
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.26 E-value=0.21 Score=52.35 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 194 KEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 194 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+.+.+.... ++..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 444455554322 3568999999999999999998865
No 407
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.26 E-value=0.1 Score=49.82 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999875
No 408
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.26 E-value=0.16 Score=50.67 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999986
No 409
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.20 E-value=0.13 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++|.|+|+.|+||||||..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999987
No 410
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.09 E-value=0.11 Score=51.81 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999886
No 411
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.03 E-value=0.12 Score=50.59 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999763
No 412
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.03 E-value=0.11 Score=50.43 Aligned_cols=21 Identities=43% Similarity=0.441 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999875
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.02 E-value=0.12 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...|.|.|++|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 414
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.02 E-value=0.086 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 415
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.96 E-value=0.14 Score=46.66 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999764
No 416
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.94 E-value=0.11 Score=49.99 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 417
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.93 E-value=0.11 Score=48.39 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 418
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.91 E-value=0.12 Score=50.81 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999886
No 419
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.87 E-value=0.13 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++|.|.|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999886
No 420
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.85 E-value=0.12 Score=51.37 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999886
No 421
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.84 E-value=0.56 Score=50.83 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=32.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLIL 264 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 264 (779)
.++.|.|.+|+||||||..++.+..... =..++|++... +..++...++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 5899999999999999999886432211 12466766543 4455555554
No 422
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.83 E-value=0.16 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+..++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3568889999999999999999874
No 423
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.81 E-value=0.12 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++|.|+|+.|+||||||+.+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999886
No 424
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.81 E-value=0.46 Score=48.18 Aligned_cols=23 Identities=39% Similarity=0.379 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999998875
No 425
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.80 E-value=0.1 Score=50.12 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 426
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.79 E-value=0.33 Score=45.88 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.|+|=|..|+||||.++.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999873
No 427
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.78 E-value=0.23 Score=48.27 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
....|.|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999873
No 428
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.76 E-value=0.14 Score=53.32 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+++|+|+.|+||||+++.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999998876
No 429
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.74 E-value=0.13 Score=50.90 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 430
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.71 E-value=0.13 Score=52.56 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999885
No 431
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.70 E-value=0.13 Score=51.11 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5899999999999999999886
No 432
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.70 E-value=0.15 Score=50.17 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999999875
No 433
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.68 E-value=0.13 Score=50.15 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999976
No 434
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.65 E-value=0.16 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..++|.|.|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999886
No 435
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.64 E-value=0.13 Score=50.76 Aligned_cols=22 Identities=45% Similarity=0.720 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 436
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.62 E-value=0.34 Score=52.18 Aligned_cols=85 Identities=20% Similarity=0.217 Sum_probs=47.2
Q ss_pred EEEEEEcCCCCcHHHHH-HHHhcccccccccC-ceEEEEeCCCCC-HHHHHHHHHHHhhc-------CCCCCcccHHHH-
Q 040735 213 SVISIKGLGGVGKTTLA-QLVYQDDRVQRHFQ-IKSWTCVFEDFD-VFRVSKLILNSIAS-------DQCTDKDDLNLL- 281 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~il~~l~~-------~~~~~~~~~~~~- 281 (779)
.-++|.|.+|+|||+|| ..+.+.. .-+ .++++-+.+... ..++...+...=.. ....++......
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 35789999999999996 5677632 234 246677776654 34444444432100 111011111111
Q ss_pred ---HHHHHHHh--CCCeEEEEEeCC
Q 040735 282 ---QEKLKKQL--SGKKFLVVLDDV 301 (779)
Q Consensus 282 ---~~~l~~~l--~~k~~LlVlDdv 301 (779)
.-.+.+++ +++.+||++||+
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11223333 589999999998
No 437
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.57 E-value=0.13 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 438
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.56 E-value=0.14 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
...|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 439
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.55 E-value=0.38 Score=60.75 Aligned_cols=86 Identities=21% Similarity=0.135 Sum_probs=56.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCT----DKDDLNLLQEKLK 286 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 286 (779)
.-+++.|.|++|+||||||.+++.... ..=..++|++....++... ++.++..... ...+.+++.+.++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 347999999999999999999876432 2223578888877776542 4445443211 3345666666666
Q ss_pred HHh-CCCeEEEEEeCCcC
Q 040735 287 KQL-SGKKFLVVLDDVWN 303 (779)
Q Consensus 287 ~~l-~~k~~LlVlDdvw~ 303 (779)
... ..+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 544 34566999999843
No 440
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.54 E-value=0.13 Score=51.28 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 441
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.54 E-value=0.15 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+|+|.|+.|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999998876
No 442
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.51 E-value=0.068 Score=54.19 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=18.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998875
No 443
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.38 E-value=0.21 Score=46.58 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 444
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.37 E-value=0.34 Score=54.17 Aligned_cols=105 Identities=12% Similarity=0.088 Sum_probs=54.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHH-HHh--
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCTDKDDLNLLQEKLK-KQL-- 289 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~l-- 289 (779)
+++.|.|++|+||||++..+....... ...+.+......- ...+.+.++. ...+...+..... ...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~A----a~~L~e~~~~----~a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKA----ARRLGEVTGR----TASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHH----HHHHHHHHTS----CEEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHH----HHHhHhhhcc----cHHHHHHHHcCCcchhhhh
Confidence 588999999999999999887632211 1233443332211 1222222221 1112211110000 000
Q ss_pred ---CCCeEEEEEeCCcCCChhhhhhhcccCCCCCCCcEEEEEcCc
Q 040735 290 ---SGKKFLVVLDDVWNENYNSWRALSCPFGAGAFGSKIVVTHRN 331 (779)
Q Consensus 290 ---~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~ 331 (779)
..+.-+||+|.+..-+...+..+...++ .+.++|+.--.
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~ 315 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDT 315 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECT
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecc
Confidence 0022389999997666666667766655 35677765543
No 445
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.35 E-value=0.14 Score=51.29 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 446
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.35 E-value=0.14 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999886
No 447
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.24 E-value=0.14 Score=48.40 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998764
No 448
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.23 E-value=0.22 Score=52.96 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=48.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccc-cccC-ceEEEEeCCCCC-HHHHHHHHHHH--hhc-----CCCCCcccHHH---
Q 040735 214 VISIKGLGGVGKTTLAQLVYQDDRVQ-RHFQ-IKSWTCVFEDFD-VFRVSKLILNS--IAS-----DQCTDKDDLNL--- 280 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~-~~~wv~~~~~~~-~~~~~~~il~~--l~~-----~~~~~~~~~~~--- 280 (779)
-++|.|.+|+|||+|+.++.+..... ++=+ .++++-+.+... ..++..++... +.. ... +......
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ats-d~p~~~r~~a 231 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLA-NDPAIERIAT 231 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEET-TSCHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECC-CCCHHHHHHH
Confidence 36889999999999999988754331 1111 456666665543 44555554432 110 001 1111111
Q ss_pred --HHHHHHHHh---CCCeEEEEEeCC
Q 040735 281 --LQEKLKKQL---SGKKFLVVLDDV 301 (779)
Q Consensus 281 --~~~~l~~~l---~~k~~LlVlDdv 301 (779)
..-.+.+++ .++.+||++||+
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 112234444 378999999998
No 449
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.23 E-value=0.16 Score=50.59 Aligned_cols=22 Identities=36% Similarity=0.718 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 450
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.18 E-value=0.18 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+++|+|++|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 451
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.16 E-value=0.15 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999886
No 452
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.13 E-value=0.15 Score=50.94 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999876
No 453
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.10 E-value=0.18 Score=45.55 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998764
No 454
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.10 E-value=0.15 Score=51.28 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999886
No 455
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.07 E-value=0.16 Score=51.56 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||++.+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 6899999999999999998875
No 456
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.05 E-value=0.36 Score=60.19 Aligned_cols=82 Identities=23% Similarity=0.197 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHHHH
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSIASDQCT----DKDDLNLLQEKLKKQ 288 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~~~ 288 (779)
+++.|.|++|+||||||.++.. .....=..++|++....++... ++.++..... ...+.+++.+.++..
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred h-CCCeEEEEEeCC
Q 040735 289 L-SGKKFLVVLDDV 301 (779)
Q Consensus 289 l-~~k~~LlVlDdv 301 (779)
. ..+.-+||+|-+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 457
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.01 E-value=0.88 Score=50.06 Aligned_cols=53 Identities=11% Similarity=-0.049 Sum_probs=35.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHHh
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNSI 267 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 267 (779)
-.++.|.|.+|+||||||.+++.+.... +=..++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 3688999999999999999887643221 112466766544 4566666665443
No 458
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.98 E-value=0.19 Score=49.95 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||++.+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 6999999999999999998875
No 459
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.96 E-value=0.17 Score=47.51 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
+.|.|.|+.|+||||||.++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999999876
No 460
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.94 E-value=0.21 Score=48.92 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=26.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCC
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFE 252 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 252 (779)
.++.|.|++|+||||||.+++.... ..=..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 5899999999999999988765321 1123456666543
No 461
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.93 E-value=0.44 Score=51.76 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=37.9
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCH-HHHHHH
Q 040735 197 IVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDV-FRVSKL 262 (779)
Q Consensus 197 l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~ 262 (779)
.++.|..-. +-.-++|.|..|+|||+|++++.+.. +-+.++++-+.+.... .++...
T Consensus 217 vID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 217 VIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHH
T ss_pred hhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 556664322 22468999999999999999987631 2346778888877654 344444
No 462
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.85 E-value=0.24 Score=45.53 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+...|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 463
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.81 E-value=0.17 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.261 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
..+++|+|++|+|||||++.+..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999886
No 464
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.81 E-value=0.19 Score=54.31 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
....+++|+|..|+|||||++.+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3467999999999999999999876
No 465
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.71 E-value=0.48 Score=46.14 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=45.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccc-cccccc-CceEEEEeCCCCCHHHHHHHHHHHhhcCCCC-----------------
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQDD-RVQRHF-QIKSWTCVFEDFDVFRVSKLILNSIASDQCT----------------- 273 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~F-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----------------- 273 (779)
+.+.|.|+.|+||||+.....-+. ...... ...+.+.........++...+...++.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 478999999999998776553321 111122 1233333333222333444444333322100
Q ss_pred --CcccHHHHHHHHHHHhCCCeEEEEEeCCcC
Q 040735 274 --DKDDLNLLQEKLKKQLSGKKFLVVLDDVWN 303 (779)
Q Consensus 274 --~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~ 303 (779)
.....+.+.+.+...+.+ --+||+|.++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 012345666666554433 34789999964
No 466
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.70 E-value=0.15 Score=51.26 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++.|+|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5999999999999999998875
No 467
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.68 E-value=0.19 Score=49.14 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
No 468
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.67 E-value=0.2 Score=53.70 Aligned_cols=42 Identities=31% Similarity=0.375 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 194 KEAIVELLLRDDSR---ADDGFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 194 ~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.++|.+++...... ..+..++|.|+|.+|+||||++..+...
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34555655432110 1134579999999999999999888763
No 469
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.67 E-value=1 Score=48.61 Aligned_cols=52 Identities=15% Similarity=0.043 Sum_probs=34.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccccCceEEEEeCCCCCHHHHHHHHHHH
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQDDRVQRHFQIKSWTCVFEDFDVFRVSKLILNS 266 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~ 266 (779)
-.++.|.|.+|+||||+|..++.+..... =..++|++.. .+..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 36899999999999999998876432211 1246666654 4456666666544
No 470
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.66 E-value=0.6 Score=50.13 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=46.9
Q ss_pred EEEEEcCCCCcHHHHH-HHHhcccccccccC-ceEEEEeCCCCC-HHHHHHHHHHHhhcC-------CCCCcccHH----
Q 040735 214 VISIKGLGGVGKTTLA-QLVYQDDRVQRHFQ-IKSWTCVFEDFD-VFRVSKLILNSIASD-------QCTDKDDLN---- 279 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~~~---- 279 (779)
-++|.|..|+|||+|| ..+.+. .+-+ .++++-+.+... ..++...+.+.=... ...++....
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAP 239 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHH
Confidence 5789999999999996 566663 2233 356777877654 344444443321000 000111111
Q ss_pred ----HHHHHHHHHhCCCeEEEEEeCC
Q 040735 280 ----LLQEKLKKQLSGKKFLVVLDDV 301 (779)
Q Consensus 280 ----~~~~~l~~~l~~k~~LlVlDdv 301 (779)
...+.+++ +++.+||++||+
T Consensus 240 ~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 240 YAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHh--cCCCEEEEecCh
Confidence 22333333 689999999998
No 471
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.63 E-value=0.17 Score=50.56 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999876
No 472
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.59 E-value=0.17 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.370 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.+++|+|++|+|||||++.+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 59999999999999999998763
No 473
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.45 E-value=0.18 Score=53.70 Aligned_cols=87 Identities=11% Similarity=0.154 Sum_probs=48.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccc--------cccC-ceEEEEeCCCCC-HHHHHHHHHHH--hhc-----CCCCCcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQDDRVQ--------RHFQ-IKSWTCVFEDFD-VFRVSKLILNS--IAS-----DQCTDKD 276 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~~~~~-~~~~~~~il~~--l~~-----~~~~~~~ 276 (779)
-++|.|.+|+|||+|+.++.+..... ++=+ .++++-+.+... ..++..++.+. +.. ... +..
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~-d~p 227 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKA-DDP 227 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEET-TSC
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECC-CCC
Confidence 46788999999999999998754331 1111 456666665543 34444444331 110 001 111
Q ss_pred cHHHH-----HHHHHHHh---CCCeEEEEEeCC
Q 040735 277 DLNLL-----QEKLKKQL---SGKKFLVVLDDV 301 (779)
Q Consensus 277 ~~~~~-----~~~l~~~l---~~k~~LlVlDdv 301 (779)
..... .-.+.+++ .++.+||++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11111 12233444 378999999998
No 474
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.42 E-value=0.55 Score=44.97 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
...|.|-|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999863
No 475
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.41 E-value=0.2 Score=49.20 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...|.|.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999886
No 476
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.35 E-value=0.18 Score=45.62 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998754
No 477
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.27 E-value=0.49 Score=45.56 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
....|.|.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 478
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.26 E-value=0.35 Score=47.75 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 194 KEAIVELLLRDDSRADDGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 194 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+..|+.... +....+.++|++|+|||.+|..+.+
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 344666765431 2345799999999999999999886
No 479
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.21 E-value=0.19 Score=49.92 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999886
No 480
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.06 E-value=0.2 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 481
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.92 E-value=0.26 Score=46.16 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+...|.|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999999864
No 482
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.92 E-value=0.28 Score=44.87 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.--|.|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356889999999999999998764
No 483
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.89 E-value=0.22 Score=45.35 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
--|.|+|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999864
No 484
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.89 E-value=0.26 Score=44.74 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.--|.|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998764
No 485
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.84 E-value=0.2 Score=45.50 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040735 214 VISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998653
No 486
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.76 E-value=0.22 Score=45.32 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999763
No 487
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.75 E-value=0.23 Score=53.15 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=48.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccc--CceEEEEeCCCCC-HHHHHHHHHHHhhc-------CCCCCcccHH----
Q 040735 214 VISIKGLGGVGKTTLAQLVYQDDRVQRHF--QIKSWTCVFEDFD-VFRVSKLILNSIAS-------DQCTDKDDLN---- 279 (779)
Q Consensus 214 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~-~~~~~~~il~~l~~-------~~~~~~~~~~---- 279 (779)
-++|.|.+|+|||+|+.++.++......- +.++++-+.+... ..++..++...=.. ....++....
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~ 233 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTP 233 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHH
Confidence 46788999999999999998754432111 2456666665543 44555555442100 0000111111
Q ss_pred HHHHHHHHHh---CCCeEEEEEeCC
Q 040735 280 LLQEKLKKQL---SGKKFLVVLDDV 301 (779)
Q Consensus 280 ~~~~~l~~~l---~~k~~LlVlDdv 301 (779)
...-.+.+++ +++.+||++||+
T Consensus 234 ~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 234 RMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1111223343 379999999997
No 488
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.75 E-value=0.49 Score=51.04 Aligned_cols=100 Identities=21% Similarity=0.242 Sum_probs=52.5
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHH-HHHhccccc----ccccC-ceEEEEeCCCCC-HHHHHHHHHHHhh-
Q 040735 197 IVELLLRDDSRADDGFSVISIKGLGGVGKTTLA-QLVYQDDRV----QRHFQ-IKSWTCVFEDFD-VFRVSKLILNSIA- 268 (779)
Q Consensus 197 l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~~~~~~-~~~~~~~il~~l~- 268 (779)
.++.|..-. +-.-++|.|.+|+|||+|| ..+.+.... .++-+ .++++-+.+... ..++...+...=.
T Consensus 152 aID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m 226 (510)
T 2ck3_A 152 AVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAM 226 (510)
T ss_dssp HHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCG
T ss_pred eeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCc
Confidence 555554332 1235789999999999995 566664321 01233 356777776654 3444444443110
Q ss_pred ------cCCCCCcccHHHH----HHHHHHHh--CCCeEEEEEeCC
Q 040735 269 ------SDQCTDKDDLNLL----QEKLKKQL--SGKKFLVVLDDV 301 (779)
Q Consensus 269 ------~~~~~~~~~~~~~----~~~l~~~l--~~k~~LlVlDdv 301 (779)
.....++...... .-.+.+++ .++.+||++||+
T Consensus 227 ~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 227 KYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred ccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 0111011111111 11223333 589999999998
No 489
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.71 E-value=0.24 Score=45.13 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 212 FSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 212 ~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999998754
No 490
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.69 E-value=0.19 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.696 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 5899999999999999999875
No 491
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.69 E-value=0.28 Score=45.49 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
...-|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999864
No 492
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.56 E-value=0.22 Score=45.08 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.-|.|+|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999998754
No 493
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.54 E-value=0.36 Score=44.32 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
..--|.|+|.+|+|||||...+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999998764
No 494
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.52 E-value=0.21 Score=51.44 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
+..+++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999998853
No 495
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.50 E-value=0.23 Score=51.64 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999986
No 496
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.49 E-value=0.24 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
.+++|+|+.|+|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999763
No 497
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.48 E-value=0.27 Score=50.27 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=21.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 210 DGFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 3568999999999999999988765
No 498
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.48 E-value=0.26 Score=47.32 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
....|.|+|.+|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998764
No 499
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.47 E-value=0.23 Score=46.34 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 040735 213 SVISIKGLGGVGKTTLAQLVYQD 235 (779)
Q Consensus 213 ~vv~I~G~gGiGKTtLa~~v~~~ 235 (779)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999998764
No 500
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.44 E-value=0.27 Score=51.20 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 040735 211 GFSVISIKGLGGVGKTTLAQLVYQ 234 (779)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLa~~v~~ 234 (779)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 367999999999999999999875
Done!