Query 040736
Match_columns 448
No_of_seqs 369 out of 2938
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:16:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10779 zinc metallopeptidase 100.0 9.9E-82 2.1E-86 661.4 36.6 348 86-441 4-449 (449)
2 TIGR00054 RIP metalloprotease 100.0 3.5E-79 7.5E-84 636.8 35.7 341 88-441 5-420 (420)
3 COG0750 Predicted membrane-ass 100.0 1.9E-49 4.1E-54 407.0 37.5 347 86-442 2-374 (375)
4 cd06163 S2P-M50_PDZ_RseP-like 100.0 1.5E-43 3.3E-48 329.2 19.5 180 90-440 2-182 (182)
5 PF02163 Peptidase_M50: Peptid 100.0 6.3E-30 1.4E-34 239.5 6.7 191 92-437 2-192 (192)
6 cd06159 S2P-M50_PDZ_Arch Uncha 100.0 1.2E-27 2.6E-32 234.2 15.6 135 30-198 17-191 (263)
7 cd05709 S2P-M50 Site-2 proteas 99.9 1.8E-26 4E-31 214.2 14.9 176 92-434 3-178 (180)
8 cd06162 S2P-M50_PDZ_SREBP Ster 99.9 1.6E-26 3.4E-31 226.5 14.8 130 35-197 32-207 (277)
9 KOG2921 Intramembrane metallop 99.8 1.8E-18 4E-23 172.5 13.5 150 77-260 112-264 (484)
10 cd06164 S2P-M50_SpoIVFB_CBS Sp 99.8 3.6E-17 7.9E-22 157.6 17.6 70 93-197 49-118 (227)
11 cd06161 S2P-M50_SpoIVFB SpoIVF 99.7 1.3E-16 2.7E-21 152.0 18.9 72 91-197 32-103 (208)
12 cd06160 S2P-M50_like_2 Unchara 99.7 2.8E-16 6E-21 146.7 16.1 74 89-197 33-112 (183)
13 cd06158 S2P-M50_like_1 Unchara 99.6 1.4E-14 3.1E-19 135.1 12.7 91 92-197 4-101 (181)
14 PF13180 PDZ_2: PDZ domain; PD 99.4 3E-12 6.5E-17 103.8 9.3 67 212-283 14-81 (82)
15 cd00991 PDZ_archaeal_metallopr 99.2 1.1E-10 2.4E-15 94.0 10.2 68 211-283 9-77 (79)
16 cd00989 PDZ_metalloprotease PD 99.2 1.6E-10 3.5E-15 92.2 9.6 67 213-284 13-79 (79)
17 cd00986 PDZ_LON_protease PDZ d 99.1 7.8E-10 1.7E-14 88.8 9.5 68 212-285 8-76 (79)
18 cd00988 PDZ_CTP_protease PDZ d 99.1 5E-10 1.1E-14 90.7 8.2 70 211-285 12-84 (85)
19 cd00990 PDZ_glycyl_aminopeptid 99.0 9.7E-10 2.1E-14 88.0 8.8 68 211-285 11-78 (80)
20 cd00987 PDZ_serine_protease PD 99.0 3.2E-09 7E-14 86.5 8.7 65 212-281 24-89 (90)
21 TIGR02860 spore_IV_B stage IV 98.9 1.3E-08 2.9E-13 105.0 11.5 85 211-300 104-197 (402)
22 PRK10779 zinc metallopeptidase 98.8 2E-08 4.3E-13 106.4 9.7 68 212-284 126-194 (449)
23 PRK10139 serine endoprotease; 98.8 2.7E-08 5.8E-13 105.5 10.4 70 212-286 290-360 (455)
24 cd00136 PDZ PDZ domain, also c 98.8 1.8E-08 4E-13 78.4 6.7 54 213-271 14-69 (70)
25 TIGR02038 protease_degS peripl 98.8 3.4E-08 7.3E-13 101.4 10.0 69 212-285 278-347 (351)
26 TIGR01713 typeII_sec_gspC gene 98.7 3.9E-08 8.5E-13 96.8 9.7 68 211-283 190-258 (259)
27 PRK10898 serine endoprotease; 98.7 4.4E-08 9.6E-13 100.6 10.2 69 212-285 279-348 (353)
28 TIGR02037 degP_htrA_DO peripla 98.7 8.9E-08 1.9E-12 100.8 10.1 70 212-286 257-327 (428)
29 PRK10942 serine endoprotease; 98.6 9.8E-08 2.1E-12 101.7 10.1 70 212-286 311-381 (473)
30 TIGR03279 cyano_FeS_chp putati 98.6 1.3E-07 2.9E-12 98.3 9.6 72 216-299 2-74 (433)
31 PF04495 GRASP55_65: GRASP55/6 98.6 1.5E-07 3.3E-12 84.1 8.1 85 211-300 42-129 (138)
32 PRK10139 serine endoprotease; 98.6 1.6E-07 3.5E-12 99.6 9.3 65 212-282 390-454 (455)
33 PLN00049 carboxyl-terminal pro 98.6 2.8E-07 6E-12 96.0 10.2 70 213-285 103-172 (389)
34 TIGR00225 prc C-terminal pepti 98.5 1.6E-07 3.5E-12 95.7 7.0 68 212-284 62-131 (334)
35 TIGR02037 degP_htrA_DO peripla 98.5 2.9E-07 6.3E-12 96.9 9.0 65 212-281 362-427 (428)
36 PRK10942 serine endoprotease; 98.5 5.1E-07 1.1E-11 96.3 9.4 65 212-282 408-472 (473)
37 cd00992 PDZ_signaling PDZ doma 98.5 4.7E-07 1E-11 72.3 6.9 56 212-271 26-81 (82)
38 PF00595 PDZ: PDZ domain (Also 98.4 4E-07 8.6E-12 73.3 6.2 57 212-272 25-81 (81)
39 KOG3129 26S proteasome regulat 98.4 9.7E-07 2.1E-11 82.6 8.5 84 212-298 139-222 (231)
40 smart00228 PDZ Domain present 98.4 8E-07 1.7E-11 71.1 6.9 58 212-275 26-85 (85)
41 TIGR00054 RIP metalloprotease 98.4 8.6E-07 1.9E-11 93.2 8.5 66 211-282 127-192 (420)
42 COG0793 Prc Periplasmic protea 98.3 2.7E-06 5.8E-11 89.0 8.7 71 212-285 112-184 (406)
43 COG3480 SdrC Predicted secrete 98.2 6.8E-06 1.5E-10 81.6 9.3 92 204-301 122-216 (342)
44 COG0265 DegQ Trypsin-like seri 98.2 7.7E-06 1.7E-10 83.7 10.0 71 211-286 269-340 (347)
45 COG1994 SpoIVFB Zn-dependent p 98.1 1.7E-05 3.6E-10 76.9 8.9 40 366-405 136-175 (230)
46 PRK11186 carboxy-terminal prot 98.0 1.3E-05 2.8E-10 88.4 8.5 74 212-285 255-334 (667)
47 PF14685 Tricorn_PDZ: Tricorn 97.8 9.3E-05 2E-09 61.1 7.2 55 222-281 30-87 (88)
48 PRK09681 putative type II secr 97.7 0.00011 2.4E-09 72.8 8.6 61 218-283 210-274 (276)
49 KOG1421 Predicted signaling-as 97.5 0.00032 7E-09 75.7 8.2 67 214-286 305-371 (955)
50 PF13398 Peptidase_M50B: Pepti 97.4 0.00028 6.1E-09 67.0 6.1 63 99-198 24-87 (200)
51 KOG3553 Tax interaction protei 97.3 0.00024 5.3E-09 59.3 3.6 47 211-260 58-104 (124)
52 KOG1320 Serine protease [Postt 97.0 0.0017 3.7E-08 68.7 7.3 69 213-286 399-468 (473)
53 COG3975 Predicted protease wit 97.0 0.0015 3.2E-08 69.3 6.6 62 213-286 463-524 (558)
54 COG3031 PulC Type II secretory 96.8 0.0036 7.8E-08 60.3 7.3 65 213-282 208-273 (275)
55 PF12812 PDZ_1: PDZ-like domai 95.6 0.024 5.2E-07 45.8 5.1 46 214-264 32-77 (78)
56 KOG3834 Golgi reassembly stack 95.5 0.024 5.3E-07 58.8 5.9 81 212-298 15-98 (462)
57 KOG3209 WW domain-containing p 95.5 0.02 4.3E-07 62.6 5.4 57 214-274 780-837 (984)
58 KOG3580 Tight junction protein 95.5 0.014 3E-07 62.6 4.0 59 212-273 429-488 (1027)
59 KOG3834 Golgi reassembly stack 94.9 0.049 1.1E-06 56.6 6.0 78 216-299 113-194 (462)
60 KOG3532 Predicted protein kina 94.7 0.051 1.1E-06 59.2 5.8 55 213-273 399-453 (1051)
61 KOG3552 FERM domain protein FR 94.4 0.045 9.8E-07 61.4 4.7 55 214-273 77-131 (1298)
62 COG1994 SpoIVFB Zn-dependent p 93.8 0.046 9.9E-07 53.0 3.0 72 96-195 51-123 (230)
63 KOG3209 WW domain-containing p 93.4 0.14 3.1E-06 56.1 6.0 58 213-273 675-734 (984)
64 KOG3542 cAMP-regulated guanine 93.0 0.077 1.7E-06 57.8 3.3 57 212-273 562-618 (1283)
65 KOG3580 Tight junction protein 93.0 0.17 3.6E-06 54.6 5.7 67 214-284 221-288 (1027)
66 KOG3550 Receptor targeting pro 92.8 0.28 6E-06 44.3 6.0 55 213-271 116-171 (207)
67 KOG3651 Protein kinase C, alph 91.4 0.39 8.4E-06 48.0 5.7 58 212-273 30-88 (429)
68 KOG3605 Beta amyloid precursor 91.2 0.41 9E-06 52.2 6.1 68 213-283 674-743 (829)
69 KOG0606 Microtubule-associated 90.0 0.39 8.5E-06 55.4 5.0 53 215-271 661-713 (1205)
70 KOG3606 Cell polarity protein 89.8 0.66 1.4E-05 45.8 5.7 59 211-273 193-252 (358)
71 KOG3549 Syntrophins (type gamm 88.9 0.52 1.1E-05 48.0 4.4 55 214-272 82-137 (505)
72 PF01434 Peptidase_M41: Peptid 87.0 0.086 1.9E-06 50.5 -2.4 21 100-120 31-53 (213)
73 KOG3551 Syntrophins (type beta 85.2 0.91 2E-05 46.9 3.8 55 214-272 112-167 (506)
74 KOG1892 Actin filament-binding 85.1 1.1 2.3E-05 51.1 4.5 60 212-275 960-1020(1629)
75 KOG3571 Dishevelled 3 and rela 83.5 1.7 3.8E-05 46.3 5.0 59 212-273 277-338 (626)
76 KOG1421 Predicted signaling-as 81.4 4.2 9.1E-05 45.1 7.1 70 211-286 861-932 (955)
77 KOG0609 Calcium/calmodulin-dep 80.5 2.3 5E-05 45.7 4.8 56 213-272 147-203 (542)
78 CHL00176 ftsH cell division pr 74.3 1.4 3E-05 49.1 1.1 22 100-121 441-464 (638)
79 TIGR01241 FtsH_fam ATP-depende 72.7 1.7 3.7E-05 46.8 1.3 24 100-123 314-339 (495)
80 PF11874 DUF3394: Domain of un 66.7 6.1 0.00013 37.1 3.4 31 210-240 120-150 (183)
81 PRK10733 hflB ATP-dependent me 62.7 3.7 8E-05 45.9 1.4 21 100-120 411-433 (644)
82 PF00413 Peptidase_M10: Matrix 62.6 3.9 8.4E-05 36.2 1.3 11 99-109 107-117 (154)
83 PF11667 DUF3267: Protein of u 62.1 6.8 0.00015 33.3 2.6 20 99-118 6-25 (111)
84 cd04279 ZnMc_MMP_like_1 Zinc-d 56.7 5.6 0.00012 35.7 1.2 14 99-112 106-119 (156)
85 cd04268 ZnMc_MMP_like Zinc-dep 52.9 7.3 0.00016 34.9 1.4 13 97-109 94-106 (165)
86 cd04278 ZnMc_MMP Zinc-dependen 52.8 5.2 0.00011 36.0 0.4 11 99-109 109-119 (157)
87 PF05572 Peptidase_M43: Pregna 48.6 8.6 0.00019 35.0 1.1 11 99-109 71-81 (154)
88 cd04277 ZnMc_serralysin_like Z 46.7 11 0.00023 35.0 1.4 13 97-109 113-125 (186)
89 smart00235 ZnMc Zinc-dependent 46.0 10 0.00022 33.2 1.2 10 100-109 89-98 (140)
90 PF13485 Peptidase_MA_2: Pepti 45.1 17 0.00036 30.3 2.3 17 99-115 27-43 (128)
91 cd04327 ZnMc_MMP_like_3 Zinc-d 44.9 12 0.00026 35.2 1.5 11 99-109 94-104 (198)
92 PF14247 DUF4344: Domain of un 43.9 19 0.0004 34.9 2.6 16 97-112 92-107 (220)
93 KOG3605 Beta amyloid precursor 41.5 22 0.00048 39.4 3.0 46 216-264 760-805 (829)
94 COG0465 HflB ATP-dependent Zn 41.4 9.8 0.00021 42.1 0.3 32 102-153 411-447 (596)
95 PF09471 Peptidase_M64: IgA Pe 41.2 11 0.00025 37.4 0.7 15 97-111 216-230 (264)
96 PF06114 DUF955: Domain of unk 38.4 20 0.00044 29.5 1.8 16 100-115 45-60 (122)
97 KOG1738 Membrane-associated gu 38.4 33 0.00072 37.8 3.8 31 214-244 227-258 (638)
98 PF13582 Reprolysin_3: Metallo 36.7 17 0.00037 30.9 1.1 12 99-110 109-120 (124)
99 COG2856 Predicted Zn peptidase 36.0 20 0.00044 34.5 1.5 15 100-114 75-89 (213)
100 cd00203 ZnMc Zinc-dependent me 35.8 19 0.00041 32.2 1.2 15 97-111 96-110 (167)
101 PF12315 DUF3633: Protein of u 34.4 29 0.00063 33.3 2.3 15 96-110 92-106 (212)
102 PF12388 Peptidase_M57: Dual-a 34.3 19 0.00041 34.6 1.0 14 99-112 135-148 (211)
103 PF13688 Reprolysin_5: Metallo 30.6 29 0.00062 32.1 1.6 20 96-115 141-160 (196)
104 PF13574 Reprolysin_2: Metallo 29.5 33 0.00072 31.6 1.8 20 97-116 111-130 (173)
105 PF02031 Peptidase_M7: Strepto 29.0 34 0.00073 30.4 1.6 10 100-109 80-89 (132)
106 cd04280 ZnMc_astacin_like Zinc 27.5 31 0.00067 32.0 1.2 12 98-109 75-86 (180)
107 cd06459 M3B_Oligoendopeptidase 27.1 35 0.00076 35.5 1.7 17 97-113 222-238 (427)
108 cd06258 Peptidase_M3_like The 26.4 38 0.00082 34.7 1.7 18 97-114 154-171 (365)
109 PF13583 Reprolysin_4: Metallo 26.0 35 0.00075 32.4 1.3 18 99-116 139-156 (206)
110 PF01432 Peptidase_M3: Peptida 25.6 42 0.00091 35.6 2.0 23 97-119 242-264 (458)
111 cd04283 ZnMc_hatching_enzyme Z 25.3 38 0.00083 31.7 1.4 12 99-110 79-90 (182)
112 COG5233 GRH1 Peripheral Golgi 24.7 47 0.001 33.9 1.9 29 216-244 67-95 (417)
113 smart00731 SprT SprT homologue 24.4 45 0.00098 29.7 1.7 16 98-113 60-75 (146)
114 PF10263 SprT-like: SprT-like 24.1 45 0.00098 29.6 1.6 18 97-114 60-77 (157)
115 TIGR02289 M3_not_pepF oligoend 23.6 45 0.00097 36.5 1.7 13 97-109 337-349 (549)
116 cd06455 M3A_TOP Peptidase M3 T 23.1 48 0.0011 35.5 1.9 17 97-113 263-279 (472)
117 PF14891 Peptidase_M91: Effect 22.8 54 0.0012 30.2 1.9 20 97-116 103-122 (174)
118 TIGR02290 M3_fam_3 oligoendope 22.6 47 0.001 36.6 1.7 15 96-110 374-388 (587)
119 PF01400 Astacin: Astacin (Pep 21.4 54 0.0012 30.7 1.6 11 99-109 81-91 (191)
120 cd06456 M3A_DCP_Oligopeptidase 21.3 56 0.0012 34.6 1.9 23 97-119 208-230 (422)
121 cd04281 ZnMc_BMP1_TLD Zinc-dep 21.1 51 0.0011 31.3 1.4 11 99-109 89-99 (200)
122 PF01447 Peptidase_M4: Thermol 20.5 63 0.0014 29.3 1.8 14 98-111 136-149 (150)
123 TIGR00181 pepF oligoendopeptid 20.2 54 0.0012 36.1 1.6 14 97-110 378-391 (591)
124 cd06457 M3A_MIP Peptidase M3 m 20.0 61 0.0013 34.7 1.8 21 97-117 248-268 (458)
No 1
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=100.00 E-value=9.9e-82 Score=661.41 Aligned_cols=348 Identities=27% Similarity=0.427 Sum_probs=307.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhCCccceEeeeccceeeeec-cCceeEEEeEEeccceeecCCCCCCCCCCCC
Q 040736 86 FESVLEAAGVLTAIIIVHESGHFLAAYLQGIHVSKFAVGFGPILAKFS-ANNVEYSLRAFPLGGFVGFPDNDPESGIPVD 164 (448)
Q Consensus 86 ~~~i~~~~~~l~~~i~vHE~gH~~~A~~~gv~V~~fsiGfGp~l~~~~-~~~t~y~i~~~plGg~v~~~~~~~~~~~~~~ 164 (448)
+++++.++++++++|++||+|||++||+||++|++||+||||+||+|+ ++||||+++++|+||||+|.|+++++..++|
T Consensus 4 ~~~i~~fil~l~~li~vHElGHfl~Ar~~gv~V~~FsiGfGp~l~~~~~~~~Tey~i~~iPlGGyVk~~~e~~~~~~~~~ 83 (449)
T PRK10779 4 LWNLAAFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDRQGTEYVIALIPLGGYVKMLDERVEPVAPEL 83 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEEEeecChhHeeEecCCCcEEEEEEEcCCCeeecCCCCCCcCChhh
Confidence 567888999999999999999999999999999999999999999996 8999999999999999999998654433345
Q ss_pred ChhhhhCCCccceeeeeecchhHHHHHHHHHHhhhhccccccccC-----------------------------------
Q 040736 165 DENLLKNRPILDRVIVISAGVVANIVFAFVIIFTQVLSVGLPVQD----------------------------------- 209 (448)
Q Consensus 165 ~~~~f~~~~~~~r~~v~~aGp~~N~l~a~v~~~~~~~~~G~p~~~----------------------------------- 209 (448)
+++.|+++|+|||++|++|||++|+++|++++++++ ..|.+...
T Consensus 84 ~~~~f~~k~~~~R~~i~~AGp~~N~ila~~~~~~~~-~~G~~~~~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~ 162 (449)
T PRK10779 84 RHHAFNNKTVGQRAAIIAAGPIANFIFAIFAYWLVF-IIGVPGVRPVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWD 162 (449)
T ss_pred hhhhhccCCHHHhhhhhhhhHHHHHHHHHHHHHHHH-hcCcccCCccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHH
Confidence 567999999999999999999999999999987766 34653210
Q ss_pred --------------------------------------------------------CCCceeecccCCCChhhhCCCCCC
Q 040736 210 --------------------------------------------------------AFPGVLVPEVRALSAASRDGLFPG 233 (448)
Q Consensus 210 --------------------------------------------------------~~~gvvV~~V~~gSpA~~AGL~~G 233 (448)
+..+++|.+|.++|||++|||++|
T Consensus 163 ~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~~~~~~~lGl~~~~~~~~~vV~~V~~~SpA~~AGL~~G 242 (449)
T PRK10779 163 AVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPDKQDPVSSLGIRPRGPQIEPVLAEVQPNSAASKAGLQAG 242 (449)
T ss_pred HHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCccccchhhcccccccCCCcCcEEEeeCCCCHHHHcCCCCC
Confidence 000257889999999999999999
Q ss_pred CEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeCCEEEEEEEeecccC-C--CCceEEEEecCC---cceeee
Q 040736 234 DVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARGEQQFEIGVTPDENY-D--GTGKIGVQLSPN---VKISKV 307 (448)
Q Consensus 234 DvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v~p~~~~-~--~~~~lGV~~~~~---~~~~~~ 307 (448)
|+|++|||+++ ++|+|+.+.++.+++++++++++|+|+..+++++++... + ..+.+|+..... ......
T Consensus 243 DvIl~Ing~~V-----~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~~~~~g~~~~~iGi~~~~~~~~~~~~~~ 317 (449)
T PRK10779 243 DRIVKVDGQPL-----TQWQTFVTLVRDNPGKPLALEIERQGSPLSLTLTPDSKPGNGKAEGFAGVVPKVIPLPDEYKTV 317 (449)
T ss_pred CEEEEECCEEc-----CCHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEEeeeecCCCceeeEEEEeccccCCcccceeE
Confidence 99999999999 899999999988788899999999999999999886432 1 236689975421 111223
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCccccCCceEeeeccHHHHHhhHHHHHHHHHHHHHHHHHhcccc
Q 040736 308 LPKNLLEAFRFTAKEFWGLSCNVLDSLKQTFFNFSQTASKVSGPVAIIAVGAEVARSNIDGLYQFAAVLNINLAVINLLP 387 (448)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~l~~l~~l~~g~~~~~~~l~GPV~I~~~~~~~a~~g~~~ll~fialISi~Lgi~NLLP 387 (448)
.++++.+|+.++++++++++..++++++++++| ..+.++++|||+|+++++++++.||..+++|+|+||+|||+|||||
T Consensus 318 ~~~~~~~ai~~a~~~~~~~~~~~~~~l~~l~~g-~~~~~~l~GPv~I~~~~~~~~~~g~~~~l~~~a~iSi~Lgi~NLlP 396 (449)
T PRK10779 318 RQYGPFSAIYEATDKTWQLMKLTVSMLGKLITG-DVKLNNLSGPISIAQGAGMSAEYGLVYYLMFLALISVNLGIINLFP 396 (449)
T ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CccHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 458999999999999999999999999999999 4577899999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 040736 388 LPALDGGSLALILIEAARGGRKLPLEVEQQIMSSGIMLVLLLGLFLIVRDTLNL 441 (448)
Q Consensus 388 IP~LDGG~Il~~liE~i~~gr~l~~~~~~~i~~~G~~lll~L~~~~~~nDi~~l 441 (448)
||+|||||++|+++|++| |||+|+++|++++.+|++++++||+++++|||.|+
T Consensus 397 iP~LDGG~l~f~~~E~i~-~r~~~~~~~~~~~~~G~~ll~~lm~~~~~nDi~rl 449 (449)
T PRK10779 397 LPVLDGGHLLFLAIEKLK-GGPVSERVQDFSYRIGSILLVLLMGLALFNDFSRL 449 (449)
T ss_pred CCccCchHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999 99999999999999999999999999999999875
No 2
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=100.00 E-value=3.5e-79 Score=636.83 Aligned_cols=341 Identities=35% Similarity=0.570 Sum_probs=303.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhCCccceEeeeccceeeeeccCceeEEEeEEeccceeecCCCCCCCC--CCCCC
Q 040736 88 SVLEAAGVLTAIIIVHESGHFLAAYLQGIHVSKFAVGFGPILAKFSANNVEYSLRAFPLGGFVGFPDNDPESG--IPVDD 165 (448)
Q Consensus 88 ~i~~~~~~l~~~i~vHE~gH~~~A~~~gv~V~~fsiGfGp~l~~~~~~~t~y~i~~~plGg~v~~~~~~~~~~--~~~~~ 165 (448)
.++.+++++++++++||+|||++||+||++|++||+||||+||+|+++||||+++++|+||||+|.|+|++++ .++|+
T Consensus 5 ~~i~~~~~~~~~v~~HE~gH~~~a~~~g~~v~~FsiGfGp~l~~~~~~~tey~i~~~plGg~v~~~g~~~~~~~~~~~~~ 84 (420)
T TIGR00054 5 WILASILALAVLIFVHELGHFLAARLCGIKVERFSIGFGPKILKFKKNGTEYAISLIPLGGYVKMKGLDKEMEVKPPETD 84 (420)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCEEEEEEEccCchheEEecCCeEEEEEEecCcceEeeccCCcccccCCcchh
Confidence 4556688899999999999999999999999999999999999999999999999999999999998765443 33456
Q ss_pred hhhhhCCCccceeeeeecchhHHHHHHHHHHhhhhcccccc--ccC----------------------------------
Q 040736 166 ENLLKNRPILDRVIVISAGVVANIVFAFVIIFTQVLSVGLP--VQD---------------------------------- 209 (448)
Q Consensus 166 ~~~f~~~~~~~r~~v~~aGp~~N~l~a~v~~~~~~~~~G~p--~~~---------------------------------- 209 (448)
++.|+++++|+|++|++|||++|+++|++++++++ ..|.| ...
T Consensus 85 ~~~f~~~~~~~r~~i~~aGp~~N~~~a~~~~~~~~-~~G~~~~~~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~ 163 (420)
T TIGR00054 85 GDLFNNKSVFQKAIIIFAGPLANFIFAIFVYIFIS-LIGVPGYEVGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGF 163 (420)
T ss_pred hhhhccCCHHHHHHhhhcccHHHHHHHHHHHHHHH-hcCCccCCCCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCH
Confidence 78999999999999999999999999999987654 45766 110
Q ss_pred -------------------------------------CCCceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCH
Q 040736 210 -------------------------------------AFPGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVV 252 (448)
Q Consensus 210 -------------------------------------~~~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~ 252 (448)
+..+++|.+|.++|||+++|||+||+|++|||+++ ++|
T Consensus 164 ~dl~~~ia~~~~~v~~~I~r~g~~~~l~v~l~~~~~~~~~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V-----~s~ 238 (420)
T TIGR00054 164 KDVRQQIADIAGEPMVEILAERENWTFEVMKELIPRGPKIEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKL-----RSW 238 (420)
T ss_pred HHHHHHHHhhcccceEEEEEecCceEecccccceecCCCcCcEEEEECCCCHHHHcCCCCCCEEEEECCEEC-----CCH
Confidence 01246889999999999999999999999999999 899
Q ss_pred HHHHHHHHcCCCCcEEEEEEeCCEEEEEEEeecccCCCCceEEEEecCCcceeeeecCCHHHHHHHHHHHHHHHHHHHHH
Q 040736 253 SELVNAIKKSPKRNVLLKVARGEQQFEIGVTPDENYDGTGKIGVQLSPNVKISKVLPKNLLEAFRFTAKEFWGLSCNVLD 332 (448)
Q Consensus 253 ~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v~p~~~~~~~~~lGV~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~ 332 (448)
+|+.+.++++++++++++++|+|+..+++++|+.. +...+|+..... ....++++.+|+.++++++++++..+++
T Consensus 239 ~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~~--~~~~iGi~~~~~---~~~~~~~~~~a~~~~~~~t~~~~~~~~~ 313 (420)
T TIGR00054 239 TDFVSAVKENPGKSMDIKVERNGETLSISLTPEAK--GKIGIGISPSLA---PLEVSYGILNAFAKGASATVDIVKLILT 313 (420)
T ss_pred HHHHHHHHhCCCCceEEEEEECCEEEEEEEEEcCC--CceEEEEecccc---ceeeecCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888889999999999999999998642 221388864321 1124579999999999999999999999
Q ss_pred HHhhhhcccccCccccCCceEeeeccHHHHHhhHHHHHHHHHHHHHHHHHhccccCCCCChhHHHHHHHHHHhcCCCCcH
Q 040736 333 SLKQTFFNFSQTASKVSGPVAIIAVGAEVARSNIDGLYQFAAVLNINLAVINLLPLPALDGGSLALILIEAARGGRKLPL 412 (448)
Q Consensus 333 ~l~~l~~g~~~~~~~l~GPV~I~~~~~~~a~~g~~~ll~fialISi~Lgi~NLLPIP~LDGG~Il~~liE~i~~gr~l~~ 412 (448)
+++++++| ..+.++++|||+|+++++++++.|+..+++|+|+||+|||+|||||||+|||||++++++|++| |||+|+
T Consensus 314 ~l~~l~~g-~~~~~~lsGPvgI~~~~~~~~~~G~~~~l~~~a~iSi~Lgi~NLLPiP~LDGG~llf~~iE~i~-gkpv~~ 391 (420)
T TIGR00054 314 NLGKLITG-SFKLKNLSGPVGIVKGAGSSANSGIVYLLQFGAFLSINLGIMNLLPIPALDGGQLLFLFIEAIR-GKPLPE 391 (420)
T ss_pred HHHhhccC-CcchhhcCCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHh-CCCCCH
Confidence 99999999 4567899999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 040736 413 EVEQQIMSSGIMLVLLLGLFLIVRDTLNL 441 (448)
Q Consensus 413 ~~~~~i~~~G~~lll~L~~~~~~nDi~~l 441 (448)
+++++++.+|++++++||+++++|||.|+
T Consensus 392 ~~~~~~~~iG~~lll~Lm~~~~~nDi~rl 420 (420)
T TIGR00054 392 KVQAFVYRIGVAFLLFLMGLGLFNDLLRL 420 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999875
No 3
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.9e-49 Score=406.97 Aligned_cols=347 Identities=30% Similarity=0.474 Sum_probs=294.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhCCccceEeeeccceeeeec-cCceeEEEeEEeccceeecCCCCCCCCC---
Q 040736 86 FESVLEAAGVLTAIIIVHESGHFLAAYLQGIHVSKFAVGFGPILAKFS-ANNVEYSLRAFPLGGFVGFPDNDPESGI--- 161 (448)
Q Consensus 86 ~~~i~~~~~~l~~~i~vHE~gH~~~A~~~gv~V~~fsiGfGp~l~~~~-~~~t~y~i~~~plGg~v~~~~~~~~~~~--- 161 (448)
+.+++.+++++.+++++||+||+|+||+||++|.+|++||||++++++ +++|+|+++++|+||||+|.+++.+...
T Consensus 2 ~~~~i~~i~~~~~lv~~he~gh~~~a~~~~~~v~~f~ig~g~~l~~~~~~~~~~~~i~~~plggyv~~~~~~~~~~~~~~ 81 (375)
T COG0750 2 MLTIIAFIIALGVLVFVHELGHFWVARRCGVKVERFSIGFGPKLFSRKDKGGTEYVLSAIPLGGYVKMLGEDAEEVVLKG 81 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhcCceeEEEEeccCcceEEEEcCCceEEEEeecCccceEEEecCccccccccc
Confidence 456777888899999999999999999999999999999999998876 7889999999999999999998765443
Q ss_pred CCCChhhhhCCCccceeeeeecchhHHHHHHHHHHhhhhccccccccCCCCceeecccCCCChhhhCCCCCCCEEEEECC
Q 040736 162 PVDDENLLKNRPILDRVIVISAGVVANIVFAFVIIFTQVLSVGLPVQDAFPGVLVPEVRALSAASRDGLFPGDVILSVNG 241 (448)
Q Consensus 162 ~~~~~~~f~~~~~~~r~~v~~aGp~~N~l~a~v~~~~~~~~~G~p~~~~~~gvvV~~V~~gSpA~~AGL~~GDvIlsInG 241 (448)
+.+.++.|..++.|+|..+.++||.+|++++++.+.......|.... ....+.++..+|+|+.+|+++||+|+++|+
T Consensus 82 ~~~~~~~f~~~~~~~~~~~~~~Gp~~n~i~~~~~~~~~~~~~G~~~~---~~~~~~~v~~~s~a~~a~l~~Gd~iv~~~~ 158 (375)
T COG0750 82 PEPRPRAFNAKSVWQRIAIVFAGPLFNFILAIVLFVVLFFVIGLVPV---ASPVVGEVAPKSAAALAGLRPGDRIVAVDG 158 (375)
T ss_pred cCcchhhhhcccccchhheeechHHHHHHHHHHHHHhhheEeeeeee---ccCeeeecCCCCHHHHcCCCCCCEEEeECC
Confidence 34566889999999999999999999999998887766555663321 112455799999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHcCCCCc---EEEEEEe-CCEE--------EEEEEeeccc--CCCC-------ceEEEEecC
Q 040736 242 NEFPKTGPNVVSELVNAIKKSPKRN---VLLKVAR-GEQQ--------FEIGVTPDEN--YDGT-------GKIGVQLSP 300 (448)
Q Consensus 242 ~~V~~~~~~s~~dl~~~L~~~~g~~---V~l~V~R-~G~~--------~~l~v~p~~~--~~~~-------~~lGV~~~~ 300 (448)
+++ ++++++.+.+....+.. +++.+.| +++. ..+.+.|... ..+. +.+|..+..
T Consensus 159 ~~i-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~i~~~~i~~~p~~ 233 (375)
T COG0750 159 EKV-----ASWDDVRRLLVAAAGDVFNLLTILVIRLDGEAHAVAAEIIKSLGLTPVVIPLKPGDKIVAVDVGAIGLSPNG 233 (375)
T ss_pred EEc-----cCHHHHHHHHHhccCCcccceEEEEEeccceeeeccccceeeEeeecceeccCCCCEEEEeeeeeeeeccCC
Confidence 999 89999988887766655 8889999 7766 5566666321 1111 244544331
Q ss_pred Ccc-eeeeecCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCccccCCceEeeeccHHHHHhhHHHHHHHHHHHHHH
Q 040736 301 NVK-ISKVLPKNLLEAFRFTAKEFWGLSCNVLDSLKQTFFNFSQTASKVSGPVAIIAVGAEVARSNIDGLYQFAAVLNIN 379 (448)
Q Consensus 301 ~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~l~~l~~g~~~~~~~l~GPV~I~~~~~~~a~~g~~~ll~fialISi~ 379 (448)
... .+.....++.+++..+..+++++...+++.+++++.+ ..+.++++||++|++..++.++.|+..+++|++++|++
T Consensus 234 ~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~l~~~~~~-~~~~~~l~Gpi~i~~~~~~~~~~~~~~~l~~~~~lsi~ 312 (375)
T COG0750 234 EPDVGKVLVKYGPLEAVGLAVEKTGRLVKLTLKMLKKLITG-DLSLKNLSGPIGIAKIAGAAASLGLINLLFFLALLSIN 312 (375)
T ss_pred CCccceeeeccCHHHHHHHHHHHHHHHHHHHHHHHHHheec-ccccccccCceehhhhhhHHHhhHHHHHHHHHHHHHHH
Confidence 111 1224567899999999999999999999999999988 46778999999999999999999999999999999999
Q ss_pred HHHhccccCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 040736 380 LAVINLLPLPALDGGSLALILIEAARGGRKLPLEVEQQIMSSGIMLVLLLGLFLIVRDTLNLD 442 (448)
Q Consensus 380 Lgi~NLLPIP~LDGG~Il~~liE~i~~gr~l~~~~~~~i~~~G~~lll~L~~~~~~nDi~~l~ 442 (448)
||++||+|+|+|||||+++.++|.++ ||+++++.+..++..|+++++.+|+++++||+.+++
T Consensus 313 lg~lNllP~p~LDGG~i~~~~~e~~~-g~~~~~~~~~~~~~~g~~ll~~~~~~~~~~di~~~~ 374 (375)
T COG0750 313 LGILNLLPIPPLDGGHLLFYLLEALR-GKPLSERVEAALYRIGLALLLLLMLLATFNDLLRLF 374 (375)
T ss_pred HHHHhccCCCccCccHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999 999999999999999999999999999999999865
No 4
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=100.00 E-value=1.5e-43 Score=329.17 Aligned_cols=180 Identities=44% Similarity=0.758 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhCCccceEeeeccceeeeeccCceeEEEeEEeccceeecCCCCCCCC-CCCCChhh
Q 040736 90 LEAAGVLTAIIIVHESGHFLAAYLQGIHVSKFAVGFGPILAKFSANNVEYSLRAFPLGGFVGFPDNDPESG-IPVDDENL 168 (448)
Q Consensus 90 ~~~~~~l~~~i~vHE~gH~~~A~~~gv~V~~fsiGfGp~l~~~~~~~t~y~i~~~plGg~v~~~~~~~~~~-~~~~~~~~ 168 (448)
+.+++++.+++++||+||+++||++|++|++|++||||++|+++++||+|+++++|+||||++.|++++++ .++++++.
T Consensus 2 ~~~~i~l~~~v~iHElGH~~~Ar~~Gv~v~~f~iGfGp~l~~~~~~~t~~~i~~iPlGGyv~~~~~~~~~~~~~~~~~~~ 81 (182)
T cd06163 2 LAFILVLGILIFVHELGHFLVAKLFGVKVEEFSIGFGPKLFSFKKGETEYSISAIPLGGYVKMLGEDPEEEADPEDDPRS 81 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeeeecCceeeeeecCCeEEEEEEEEeccEEEecCCCcccccccccchHH
Confidence 45678889999999999999999999999999999999999999999999999999999999998765432 24667889
Q ss_pred hhCCCccceeeeeecchhHHHHHHHHHHhhhhccccccccCCCCceeecccCCCChhhhCCCCCCCEEEEECCeecCCCC
Q 040736 169 LKNRPILDRVIVISAGVVANIVFAFVIIFTQVLSVGLPVQDAFPGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTG 248 (448)
Q Consensus 169 f~~~~~~~r~~v~~aGp~~N~l~a~v~~~~~~~~~G~p~~~~~~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~ 248 (448)
|+++++|+|++|++|||++|+++|+++++++
T Consensus 82 f~~~~~~~ri~V~lAGP~~NlilA~i~~~~~------------------------------------------------- 112 (182)
T cd06163 82 FNSKPVWQRILIVFAGPLANFLLAIVLFAVL------------------------------------------------- 112 (182)
T ss_pred HccCCcchhhhhhhhHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 9999999999999999999999999876532
Q ss_pred CCCHHHHHHHHHcCCCCcEEEEEEeCCEEEEEEEeecccCCCCceEEEEecCCcceeeeecCCHHHHHHHHHHHHHHHHH
Q 040736 249 PNVVSELVNAIKKSPKRNVLLKVARGEQQFEIGVTPDENYDGTGKIGVQLSPNVKISKVLPKNLLEAFRFTAKEFWGLSC 328 (448)
Q Consensus 249 ~~s~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v~p~~~~~~~~~lGV~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (448)
T Consensus 113 -------------------------------------------------------------------------------- 112 (182)
T cd06163 113 -------------------------------------------------------------------------------- 112 (182)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhhcccccCccccCCceEeeeccHHHHHhhHHHHHHHHHHHHHHHHHhccccCCCCChhHHHHHHHHHHhcCC
Q 040736 329 NVLDSLKQTFFNFSQTASKVSGPVAIIAVGAEVARSNIDGLYQFAAVLNINLAVINLLPLPALDGGSLALILIEAARGGR 408 (448)
Q Consensus 329 ~~l~~l~~l~~g~~~~~~~l~GPV~I~~~~~~~a~~g~~~ll~fialISi~Lgi~NLLPIP~LDGG~Il~~liE~i~~gr 408 (448)
+.+.+.+|++|++|||+|+|||||||++..++|+++ |+
T Consensus 113 -----------------------------------------~~~~~~~n~~l~~fNLlPippLDGg~il~~~~~~~~-~~ 150 (182)
T cd06163 113 -----------------------------------------LSFLALLSINLGILNLLPIPALDGGHLLFLLIEAIR-GR 150 (182)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-CC
Confidence 355778999999999999999999999999999999 99
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040736 409 KLPLEVEQQIMSSGIMLVLLLGLFLIVRDTLN 440 (448)
Q Consensus 409 ~l~~~~~~~i~~~G~~lll~L~~~~~~nDi~~ 440 (448)
+.+++.++.++.+|+++++.+++++++||+.|
T Consensus 151 ~~~~~~~~~~~~~g~~ill~l~~~~~~~d~~~ 182 (182)
T cd06163 151 PLSEKVEEIIQTIGFALLLGLMLFVTFNDIVR 182 (182)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999875
No 5
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=99.96 E-value=6.3e-30 Score=239.46 Aligned_cols=191 Identities=33% Similarity=0.484 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhCCccceEeeeccceeeeeccCceeEEEeEEeccceeecCCCCCCCCCCCCChhhhhC
Q 040736 92 AAGVLTAIIIVHESGHFLAAYLQGIHVSKFAVGFGPILAKFSANNVEYSLRAFPLGGFVGFPDNDPESGIPVDDENLLKN 171 (448)
Q Consensus 92 ~~~~l~~~i~vHE~gH~~~A~~~gv~V~~fsiGfGp~l~~~~~~~t~y~i~~~plGg~v~~~~~~~~~~~~~~~~~~f~~ 171 (448)
+++++.+++++||+||+++|+++|++++++..|+|+.+++.+.+.|+|.++++|+|||+.+.|+++++....++++.+++
T Consensus 2 ~~~~~~i~i~~HE~gH~~~a~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~ 81 (192)
T PF02163_consen 2 FILALLISIVLHELGHALAARLYGDKVPRFEGGFGLNIFSHRDGFTIWSIRLIPLGGYVGGFGWSNVNPFPAPISESFRK 81 (192)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTT--B--EEE------------------------------------------------
T ss_pred CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 45667888999999999999999999999999999999998877799999999999999998874333223344556777
Q ss_pred CCccceeeeeecchhHHHHHHHHHHhhhhccccccccCCCCceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCC
Q 040736 172 RPILDRVIVISAGVVANIVFAFVIIFTQVLSVGLPVQDAFPGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNV 251 (448)
Q Consensus 172 ~~~~~r~~v~~aGp~~N~l~a~v~~~~~~~~~G~p~~~~~~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s 251 (448)
+++++++++++|||++|+++|++++......... ..
T Consensus 82 ~~~~~~~~i~laGp~~nllla~i~~~l~~~~~~~----------~~---------------------------------- 117 (192)
T PF02163_consen 82 RSRWKRILIALAGPLANLLLAIIALLLLYLLSGS----------VG---------------------------------- 117 (192)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHTTS--------------------------------------------------
T ss_pred CCccceEEEEEEcHHHHHHHHHHHHHHHHHHhcc----------cc----------------------------------
Confidence 8899999999999999999999876553321110 00
Q ss_pred HHHHHHHHHcCCCCcEEEEEEeCCEEEEEEEeecccCCCCceEEEEecCCcceeeeecCCHHHHHHHHHHHHHHHHHHHH
Q 040736 252 VSELVNAIKKSPKRNVLLKVARGEQQFEIGVTPDENYDGTGKIGVQLSPNVKISKVLPKNLLEAFRFTAKEFWGLSCNVL 331 (448)
Q Consensus 252 ~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v~p~~~~~~~~~lGV~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l 331 (448)
.
T Consensus 118 ---------------------------------------------~---------------------------------- 118 (192)
T PF02163_consen 118 ---------------------------------------------W---------------------------------- 118 (192)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------c----------------------------------
Confidence 0
Q ss_pred HHHhhhhcccccCccccCCceEeeeccHHHHHhhHHHHHHHHHHHHHHHHHhccccCCCCChhHHHHHHHHHHhcCCCCc
Q 040736 332 DSLKQTFFNFSQTASKVSGPVAIIAVGAEVARSNIDGLYQFAAVLNINLAVINLLPLPALDGGSLALILIEAARGGRKLP 411 (448)
Q Consensus 332 ~~l~~l~~g~~~~~~~l~GPV~I~~~~~~~a~~g~~~ll~fialISi~Lgi~NLLPIP~LDGG~Il~~liE~i~~gr~l~ 411 (448)
...+..++.+.+++|+.++++||+|+|+|||||++..+.|.++ +++.+
T Consensus 119 -------------------------------~~~~~~~~~~~~~~n~~l~~~NllPi~~lDG~~il~~l~~~~~-~~~~~ 166 (192)
T PF02163_consen 119 -------------------------------SSFFAEFLFFFAWLNFILALFNLLPIPPLDGGRILRALLEMIR-RRRIN 166 (192)
T ss_dssp -------------------------------EETTEEHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHH-HHH-HHHHH
T ss_pred -------------------------------cHHHHHHHHHHHHHHHHHhhhhcccCCcCCHHHHHHHHHHHHh-CCHHH
Confidence 0011224678899999999999999999999999999999999 88899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040736 412 LEVEQQIMSSGIMLVLLLGLFLIVRD 437 (448)
Q Consensus 412 ~~~~~~i~~~G~~lll~L~~~~~~nD 437 (448)
++.+.....+|+++++.++++.++||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (192)
T PF02163_consen 167 ERIVQIILLIGLVLLLLLFILILFND 192 (192)
T ss_dssp HHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhEEEEEEEhHHhcccCC
Confidence 99999999999999999999999998
No 6
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=99.95 E-value=1.2e-27 Score=234.21 Aligned_cols=135 Identities=26% Similarity=0.305 Sum_probs=104.6
Q ss_pred CCCCCccccCcccccccCCceeE-EeecccccccccCCCccccceeeccccCCChhHHHH--------------------
Q 040736 30 LKPKTHLSKSHFSCACSSSSLSF-YCKNQLFYEKSKYPFRKRLHFRTCAVSGFDLGSFES-------------------- 88 (448)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------- 88 (448)
+++++..+ ++.+. +||.+|+ |+||+.++| |+++++|+ ||.+.+.|+.+....+
T Consensus 17 ~~~~~~~~-~~~~~--~~p~~~~~t~~~~~~~~--~~~~~~~~-~r~~~~~Gv~v~i~~~~~~~~~li~~~~~~~~~~~~ 90 (263)
T cd06159 17 LRKRGILE-YNIST--YGPFLMLRTKKGRGFID--KLARPKRF-WRAFGNIGIPIAFVGMIFMLLLILLSAIIILSGPPA 90 (263)
T ss_pred HHhhccCC-CCeEE--eeceeeEeeecchHHHH--HhhcCCCc-eeEEEEeeeeeehHHHHHHHHHHHHHHHHhcccCCc
Confidence 34555555 56888 9999999 999999999 99999999 9999998887632211
Q ss_pred -------------------HHHHHHHHHHHHHHHhhHHHHHHHHhCCccceEeeeccceeeeeccCceeEEEeEEeccce
Q 040736 89 -------------------VLEAAGVLTAIIIVHESGHFLAAYLQGIHVSKFAVGFGPILAKFSANNVEYSLRAFPLGGF 149 (448)
Q Consensus 89 -------------------i~~~~~~l~~~i~vHE~gH~~~A~~~gv~V~~fsiGfGp~l~~~~~~~t~y~i~~~plGg~ 149 (448)
++.+++++.+++++||+||+++||++|++|++ +|+ .+..+|+|||
T Consensus 91 ~~~~~~~~~~ipGv~~~i~~~~~~iaL~isv~iHElgHa~~Ar~~G~~V~~--iGl--------------~l~~ip~Gg~ 154 (263)
T cd06159 91 PLNAPRNVLVIPGVNIFIPLPYGIIALVVGVVVHELSHGILARVEGIKVKS--GGL--------------LLLIIPPGAF 154 (263)
T ss_pred cccccceeeccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECc--hhH--------------HHHhhhcEEE
Confidence 22333445666779999999999999999998 443 1446799999
Q ss_pred eecCCCCCCCCCCCCChhhhhCCCccceeeeeecchhHHHHHHHHHHhh
Q 040736 150 VGFPDNDPESGIPVDDENLLKNRPILDRVIVISAGVVANIVFAFVIIFT 198 (448)
Q Consensus 150 v~~~~~~~~~~~~~~~~~~f~~~~~~~r~~v~~aGp~~N~l~a~v~~~~ 198 (448)
+++. | +.+.++++++|++|++|||++|+++|++++.+
T Consensus 155 v~~~-----------~-~~~~~~~~~~~~~Ia~AGP~~Nlvla~i~~~l 191 (263)
T cd06159 155 VEPD-----------E-EELNKADRRIRLRIFAAGVTANFVVALIAFAL 191 (263)
T ss_pred EEec-----------c-hhhccCChhheeeeeeehHHHHHHHHHHHHHH
Confidence 9852 2 23455778899999999999999999887653
No 7
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin
Probab=99.94 E-value=1.8e-26 Score=214.23 Aligned_cols=176 Identities=36% Similarity=0.607 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhCCccceEeeeccceeeeeccCceeEEEeEEeccceeecCCCCCCCCCCCCChhhhhC
Q 040736 92 AAGVLTAIIIVHESGHFLAAYLQGIHVSKFAVGFGPILAKFSANNVEYSLRAFPLGGFVGFPDNDPESGIPVDDENLLKN 171 (448)
Q Consensus 92 ~~~~l~~~i~vHE~gH~~~A~~~gv~V~~fsiGfGp~l~~~~~~~t~y~i~~~plGg~v~~~~~~~~~~~~~~~~~~f~~ 171 (448)
.++++.+++++||+||+++||++|+++++|++|+ .+.+.++.+++.+.++|+|||+++.++++ +.+ +
T Consensus 3 ~~~~~~i~i~iHE~gH~~~A~~~G~~~~~~~~~~---~~~~~~~~~~~~~~~ip~gG~~~~~~~~~---------~~~-~ 69 (180)
T cd05709 3 FILALLISVTVHELGHALVARRLGVKVARFSGGF---TLNPLKHGDPYGIILIPLGGYAKPVGENP---------RAF-K 69 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCchheeeeE---EECCcCCCCEehHHHHhccCeeccCCCCh---------hhh-c
Confidence 3555677899999999999999999999999998 77788889999999999999999766432 111 4
Q ss_pred CCccceeeeeecchhHHHHHHHHHHhhhhccccccccCCCCceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCC
Q 040736 172 RPILDRVIVISAGVVANIVFAFVIIFTQVLSVGLPVQDAFPGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNV 251 (448)
Q Consensus 172 ~~~~~r~~v~~aGp~~N~l~a~v~~~~~~~~~G~p~~~~~~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s 251 (448)
+++++|++|++|||++|+++|++++.......+.+. . ..
T Consensus 70 ~~~~~~~~i~laGPl~nllla~i~~~~~~~~~~~~~-~-------~~--------------------------------- 108 (180)
T cd05709 70 KPRWQRLLVALAGPLANLLLALLLLLLLLLLGGLPP-A-------PV--------------------------------- 108 (180)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHHHHHccCCc-c-------ch---------------------------------
Confidence 678899999999999999999988765432211110 0 00
Q ss_pred HHHHHHHHHcCCCCcEEEEEEeCCEEEEEEEeecccCCCCceEEEEecCCcceeeeecCCHHHHHHHHHHHHHHHHHHHH
Q 040736 252 VSELVNAIKKSPKRNVLLKVARGEQQFEIGVTPDENYDGTGKIGVQLSPNVKISKVLPKNLLEAFRFTAKEFWGLSCNVL 331 (448)
Q Consensus 252 ~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v~p~~~~~~~~~lGV~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l 331 (448)
T Consensus 109 -------------------------------------------------------------------------------- 108 (180)
T cd05709 109 -------------------------------------------------------------------------------- 108 (180)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhcccccCccccCCceEeeeccHHHHHhhHHHHHHHHHHHHHHHHHhccccCCCCChhHHHHHHHHHHhcCCCCc
Q 040736 332 DSLKQTFFNFSQTASKVSGPVAIIAVGAEVARSNIDGLYQFAAVLNINLAVINLLPLPALDGGSLALILIEAARGGRKLP 411 (448)
Q Consensus 332 ~~l~~l~~g~~~~~~~l~GPV~I~~~~~~~a~~g~~~ll~fialISi~Lgi~NLLPIP~LDGG~Il~~liE~i~~gr~l~ 411 (448)
.......+..++++.+.+|+.++++||+|+|+|||||++..++|..+ +|
T Consensus 109 ---------------------------~~~~~~~~~~~l~~~~~~n~~l~~fNLlPi~plDGg~il~~~l~~~~-~~--- 157 (180)
T cd05709 109 ---------------------------GQAASSGLANLLAFLALINLNLAVFNLLPIPPLDGGRILRALLEAIR-GR--- 157 (180)
T ss_pred ---------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhHHH-HH---
Confidence 00011245567888999999999999999999999999999999998 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040736 412 LEVEQQIMSSGIMLVLLLGLFLI 434 (448)
Q Consensus 412 ~~~~~~i~~~G~~lll~L~~~~~ 434 (448)
.++.....|+++++.+++..+
T Consensus 158 --~~~~~~~~~~~~~~~~~~~~~ 178 (180)
T cd05709 158 --VEERLEAYGFAILLGLLLLLL 178 (180)
T ss_pred --HHHHHHHHHHHHHHHHHHHHh
Confidence 667777788877777766554
No 8
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=99.94 E-value=1.6e-26 Score=226.46 Aligned_cols=130 Identities=25% Similarity=0.347 Sum_probs=99.1
Q ss_pred ccccCcccccccCCceeE-Eee-cccccccccCCCccccceeeccccCCChhHHHHHHHH--------------------
Q 040736 35 HLSKSHFSCACSSSSLSF-YCK-NQLFYEKSKYPFRKRLHFRTCAVSGFDLGSFESVLEA-------------------- 92 (448)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~-------------------- 92 (448)
.+++++++- +-..+++ |+| |+.++| +..|+||+ ||.|.+.|+-++...++.++
T Consensus 32 fl~~~gl~v--~~~~i~~~t~~~~~~~~~--~~~~~~r~-~r~~~~iGv~~~~~~m~~~~~~l~~~~~~~~~~~~~~~~~ 106 (277)
T cd06162 32 FLKNTGLSI--SPFHIRWHTTAFNRLFYR--WGRAKPRL-LYLWFSLGVVFGVLAMFLSVFLLGKTLMQTLSQMMASSPA 106 (277)
T ss_pred HHHhCCeEE--EEEEEEEEEeccchHHHH--HHhcCCcH-HHhhhhchHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence 466777776 5557999 888 999999 99999999 99999999887655443322
Q ss_pred ------------------------HHHHHHHHHHHhhHHHHHHHHhCCccceEeeeccceeeeeccCceeEEEeEEeccc
Q 040736 93 ------------------------AGVLTAIIIVHESGHFLAAYLQGIHVSKFAVGFGPILAKFSANNVEYSLRAFPLGG 148 (448)
Q Consensus 93 ------------------------~~~l~~~i~vHE~gH~~~A~~~gv~V~~fsiGfGp~l~~~~~~~t~y~i~~~plGg 148 (448)
++++.+++++||+||+++|+++|++|+++++.+ +..+| ||
T Consensus 107 ~~~~~~~~~~iPGv~lp~~~~~~~l~al~isvvvHElgHal~A~~~gi~V~~iGl~l---------------~~~~p-Ga 170 (277)
T cd06162 107 VANEQVLQVVVPGVNLPLSQLGYYFTALLISGVVHEMGHGVAAVREQVRVNGFGIFF---------------FIIYP-GA 170 (277)
T ss_pred cccCcceeeecCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeceEEEee---------------eeccC-ee
Confidence 223445566999999999999999999965542 33445 99
Q ss_pred eeecCCCCCCCCCCCCChhhhhCCCccceeeeeecchhHHHHHHHHHHh
Q 040736 149 FVGFPDNDPESGIPVDDENLLKNRPILDRVIVISAGVVANIVFAFVIIF 197 (448)
Q Consensus 149 ~v~~~~~~~~~~~~~~~~~~f~~~~~~~r~~v~~aGp~~N~l~a~v~~~ 197 (448)
|+++.++ .+++.++++|++|++|||++|+++|++++.
T Consensus 171 ~ve~~~e------------~~~~~~~~~~l~Ia~AGp~~NlvLa~i~~~ 207 (277)
T cd06162 171 YVDLFTD------------HLNLISPVQQLRIFCAGVWHNFVLGLVGYL 207 (277)
T ss_pred EEeeccc------------ccccCChhhhhheehhhHHHHHHHHHHHHH
Confidence 9985332 234456778999999999999999998764
No 9
>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.8e-18 Score=172.53 Aligned_cols=150 Identities=29% Similarity=0.447 Sum_probs=117.0
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhCCccceEeeeccceeeeeccCceeEEEeEEeccceeecCCCC
Q 040736 77 AVSGFDLGSFESVLEAAGVLTAIIIVHESGHFLAAYLQGIHVSKFAVGFGPILAKFSANNVEYSLRAFPLGGFVGFPDND 156 (448)
Q Consensus 77 ~~~~~~l~~~~~i~~~~~~l~~~i~vHE~gH~~~A~~~gv~V~~fsiGfGp~l~~~~~~~t~y~i~~~plGg~v~~~~~~ 156 (448)
..+|+++. +..+.+++.++.+.+++||+||+|||-..|++|+.|+|-+ +...| |+|+++.
T Consensus 112 iiPg~nLp-l~~I~yf~t~lvi~~vvHElGHalAA~segV~vngfgIfi---------------~aiyP-gafvdl~--- 171 (484)
T KOG2921|consen 112 IIPGTNLP-LSGIAYFLTSLVITVVVHELGHALAAASEGVQVNGFGIFI---------------AAIYP-GAFVDLD--- 171 (484)
T ss_pred ecCccccc-cccchhhhhhHHHHHHHHHhhHHHHHHhcCceeeeeEEEE---------------EEEcC-chhhhhh---
Confidence 45677773 4456677777888899999999999999999999987752 44455 9999863
Q ss_pred CCCCCCCCChhhhhCCCccceeeeeecchhHHHHHHHHHHhhhhccc--cccccCCCCceeecccCCCChhh-hCCCCCC
Q 040736 157 PESGIPVDDENLLKNRPILDRVIVISAGVVANIVFAFVIIFTQVLSV--GLPVQDAFPGVLVPEVRALSAAS-RDGLFPG 233 (448)
Q Consensus 157 ~~~~~~~~~~~~f~~~~~~~r~~v~~aGp~~N~l~a~v~~~~~~~~~--G~p~~~~~~gvvV~~V~~gSpA~-~AGL~~G 233 (448)
.+.+++.+..+|+.|++||.+.||++|.++++++.... =.|..+...|+.|.+|...||+. ..||++|
T Consensus 172 ---------~dhLqsl~~fr~LrIfcAGIWHNfvfallc~lal~~lpViLsPfya~g~gV~Vtev~~~Spl~gprGL~vg 242 (484)
T KOG2921|consen 172 ---------NDHLQSLPSFRALRIFCAGIWHNFVFALLCVLALFLLPVILSPFYAHGEGVTVTEVPSVSPLFGPRGLSVG 242 (484)
T ss_pred ---------hhHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHhhchhhhcCceEEEEeccccCCCcCcccCCcc
Confidence 34688889999999999999999999999887654321 12444556789999999999985 2499999
Q ss_pred CEEEEECCeecCCCCCCCHHHHHHHHH
Q 040736 234 DVILSVNGNEFPKTGPNVVSELVNAIK 260 (448)
Q Consensus 234 DvIlsInG~~V~~~~~~s~~dl~~~L~ 260 (448)
|+|+++||++| ++.+|-.+.++
T Consensus 243 dvitsldgcpV-----~~v~dW~ecl~ 264 (484)
T KOG2921|consen 243 DVITSLDGCPV-----HKVSDWLECLA 264 (484)
T ss_pred ceEEecCCccc-----CCHHHHHHHHH
Confidence 99999999999 44444444443
No 10
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=99.75 E-value=3.6e-17 Score=157.65 Aligned_cols=70 Identities=27% Similarity=0.436 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhCCccceEeeeccceeeeeccCceeEEEeEEeccceeecCCCCCCCCCCCCChhhhhCC
Q 040736 93 AGVLTAIIIVHESGHFLAAYLQGIHVSKFAVGFGPILAKFSANNVEYSLRAFPLGGFVGFPDNDPESGIPVDDENLLKNR 172 (448)
Q Consensus 93 ~~~l~~~i~vHE~gH~~~A~~~gv~V~~fsiGfGp~l~~~~~~~t~y~i~~~plGg~v~~~~~~~~~~~~~~~~~~f~~~ 172 (448)
.+.+.+++++||+||+++||++|+++++ +.+.|+||++++.+++ .
T Consensus 49 ~~~l~~~v~iHElgH~~~A~~~G~~v~~--------------------i~l~p~Gg~~~~~~~~---------------~ 93 (227)
T cd06164 49 ALLLFASVLLHELGHSLVARRYGIPVRS--------------------ITLFLFGGVARLEREP---------------E 93 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeECe--------------------EEEEeeeEEEEecCCC---------------C
Confidence 3445577999999999999999999987 6778999999875421 1
Q ss_pred CccceeeeeecchhHHHHHHHHHHh
Q 040736 173 PILDRVIVISAGVVANIVFAFVIIF 197 (448)
Q Consensus 173 ~~~~r~~v~~aGp~~N~l~a~v~~~ 197 (448)
++++++.|++|||++|+++|++++.
T Consensus 94 ~~~~~~~IalAGPl~Nllla~i~~~ 118 (227)
T cd06164 94 TPGQEFVIAIAGPLVSLVLALLFLL 118 (227)
T ss_pred CHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 4578999999999999999987664
No 11
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=99.74 E-value=1.3e-16 Score=152.02 Aligned_cols=72 Identities=24% Similarity=0.404 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhCCccceEeeeccceeeeeccCceeEEEeEEeccceeecCCCCCCCCCCCCChhhhh
Q 040736 91 EAAGVLTAIIIVHESGHFLAAYLQGIHVSKFAVGFGPILAKFSANNVEYSLRAFPLGGFVGFPDNDPESGIPVDDENLLK 170 (448)
Q Consensus 91 ~~~~~l~~~i~vHE~gH~~~A~~~gv~V~~fsiGfGp~l~~~~~~~t~y~i~~~plGg~v~~~~~~~~~~~~~~~~~~f~ 170 (448)
...+.+.+++++||+||+++||++|+++++ +.+.|+||++++.+. +
T Consensus 32 ~~~l~l~~~v~iHElgH~~~A~~~G~~v~~--------------------i~l~p~Gg~~~~~~~----------~---- 77 (208)
T cd06161 32 LEALLLFLSVLLHELGHALVARRYGIRVRS--------------------ITLLPFGGVAELEEE----------P---- 77 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccc--------------------eEEEeeeeeeeeccC----------C----
Confidence 344556667999999999999999999987 678899999986321 0
Q ss_pred CCCccceeeeeecchhHHHHHHHHHHh
Q 040736 171 NRPILDRVIVISAGVVANIVFAFVIIF 197 (448)
Q Consensus 171 ~~~~~~r~~v~~aGp~~N~l~a~v~~~ 197 (448)
.++++++.|++|||++|+++|++++.
T Consensus 78 -~~~~~~~lIalAGPl~n~~la~~~~~ 103 (208)
T cd06161 78 -ETPKEEFVIALAGPLVSLLLAGLFYL 103 (208)
T ss_pred -CChhHheeeeeehHHHHHHHHHHHHH
Confidence 15678999999999999999987754
No 12
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=99.71 E-value=2.8e-16 Score=146.65 Aligned_cols=74 Identities=28% Similarity=0.372 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhCCccceEeeeccceeeeeccCceeEEEeEEe------ccceeecCCCCCCCCCC
Q 040736 89 VLEAAGVLTAIIIVHESGHFLAAYLQGIHVSKFAVGFGPILAKFSANNVEYSLRAFP------LGGFVGFPDNDPESGIP 162 (448)
Q Consensus 89 i~~~~~~l~~~i~vHE~gH~~~A~~~gv~V~~fsiGfGp~l~~~~~~~t~y~i~~~p------lGg~v~~~~~~~~~~~~ 162 (448)
-+.+.+++.+++++||+||+++||++|+++++ ..++| +|++++..+.
T Consensus 33 ~~~~~l~l~~~l~iHElgH~~~A~~~G~~~~~--------------------~~l~P~~~~G~~G~~~~~~~~------- 85 (183)
T cd06160 33 GLPFALALLAILGIHEMGHYLAARRHGVKASL--------------------PYFIPFPFIGTFGAFIRMRSP------- 85 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccc--------------------eeeeehHhcCcEEEEEEecCC-------
Confidence 34556667778999999999999999999987 45678 7888775321
Q ss_pred CCChhhhhCCCccceeeeeecchhHHHHHHHHHHh
Q 040736 163 VDDENLLKNRPILDRVIVISAGVVANIVFAFVIIF 197 (448)
Q Consensus 163 ~~~~~~f~~~~~~~r~~v~~aGp~~N~l~a~v~~~ 197 (448)
.+++++++.|++|||++|++++++++.
T Consensus 86 --------~~~~~~~~~IalAGPl~nl~lali~~~ 112 (183)
T cd06160 86 --------IPNRKALFDIALAGPLAGLLLALPVLI 112 (183)
T ss_pred --------CCChhHhehhhhhHHHHHHHHHHHHHH
Confidence 035678999999999999999877653
No 13
>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.
Probab=99.58 E-value=1.4e-14 Score=135.08 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhCCccceEe--eeccceeeeeccCceeEEEeEEe-----ccceeecCCCCCCCCCCCC
Q 040736 92 AAGVLTAIIIVHESGHFLAAYLQGIHVSKFA--VGFGPILAKFSANNVEYSLRAFP-----LGGFVGFPDNDPESGIPVD 164 (448)
Q Consensus 92 ~~~~l~~~i~vHE~gH~~~A~~~gv~V~~fs--iGfGp~l~~~~~~~t~y~i~~~p-----lGg~v~~~~~~~~~~~~~~ 164 (448)
.++++.+++++||++|+++|+++|.+..+.. +-.-|. -..+--|| -.+| .+|+.+.. +.
T Consensus 4 ~~~~~~~~i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~-~hid~~g~----l~~~~~~~~~~G~a~p~---------~~ 69 (181)
T cd06158 4 VIIAVLLAITLHEFAHAYVAYRLGDPTARRAGRLTLNPL-AHIDPIGT----IILPLLLPFLFGWAKPV---------PV 69 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCceecCcH-HhcCcchH----HHHHHHHHhCeEEeccc---------cc
Confidence 3445666789999999999999999987632 110110 00000000 0112 23444321 23
Q ss_pred ChhhhhCCCccceeeeeecchhHHHHHHHHHHh
Q 040736 165 DENLLKNRPILDRVIVISAGVVANIVFAFVIIF 197 (448)
Q Consensus 165 ~~~~f~~~~~~~r~~v~~aGp~~N~l~a~v~~~ 197 (448)
++..+ +++++++.+|++|||++|+++|++++.
T Consensus 70 ~~~~~-~~~r~~~~~valAGP~~n~~la~i~~~ 101 (181)
T cd06158 70 NPRNF-KNPRRGMLLVSLAGPLSNLLLALLFAL 101 (181)
T ss_pred ChHhh-cccHhhHhhhhhhhHHHHHHHHHHHHH
Confidence 34455 567889999999999999999987654
No 14
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.37 E-value=3e-12 Score=103.76 Aligned_cols=67 Identities=40% Similarity=0.618 Sum_probs=61.4
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEeCCEEEEEEEe
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVARGEQQFEIGVT 283 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R~G~~~~l~v~ 283 (448)
.|++|.+|.++|||+++||++||+|++|||+++ ++++|+.+.+.. .+|+++++++.|+|+..+++++
T Consensus 14 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v-----~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~ 81 (82)
T PF13180_consen 14 GGVVVVSVIPGSPAAKAGLQPGDIILAINGKPV-----NSSEDLVNILSKGKPGDTVTLTVLRDGEELTVEVT 81 (82)
T ss_dssp SSEEEEEESTTSHHHHTTS-TTEEEEEETTEES-----SSHHHHHHHHHCSSTTSEEEEEEEETTEEEEEEEE
T ss_pred CeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEc-----CCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEE
Confidence 489999999999999999999999999999999 899999999964 6799999999999999998876
No 15
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.21 E-value=1.1e-10 Score=94.04 Aligned_cols=68 Identities=26% Similarity=0.386 Sum_probs=61.8
Q ss_pred CCceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcC-CCCcEEEEEEeCCEEEEEEEe
Q 040736 211 FPGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKS-PKRNVLLKVARGEQQFEIGVT 283 (448)
Q Consensus 211 ~~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~-~g~~V~l~V~R~G~~~~l~v~ 283 (448)
..|++|.+|.++|||+++||++||+|++|||+++ .+|+|+.+.+... +++++.+++.|+|+..+++++
T Consensus 9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v-----~~~~d~~~~l~~~~~g~~v~l~v~r~g~~~~~~~~ 77 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPI-----TTLEDFMEALKPTKPGEVITVTVLPSTTKLTNVST 77 (79)
T ss_pred CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEc-----CCHHHHHHHHhcCCCCCEEEEEEEECCEEEEEEEE
Confidence 4689999999999999999999999999999999 8999999999874 588999999999998887765
No 16
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.18 E-value=1.6e-10 Score=92.17 Aligned_cols=67 Identities=31% Similarity=0.538 Sum_probs=59.9
Q ss_pred ceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeCCEEEEEEEee
Q 040736 213 GVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARGEQQFEIGVTP 284 (448)
Q Consensus 213 gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v~p 284 (448)
.++|.+|.++|||+++||++||+|++|||+++ ++++|+.+.+....++.+.+++.|+++..++.++|
T Consensus 13 ~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i-----~~~~~~~~~l~~~~~~~~~l~v~r~~~~~~~~l~~ 79 (79)
T cd00989 13 EPVIGEVVPGSPAAKAGLKAGDRILAINGQKI-----KSWEDLVDAVQENPGKPLTLTVERNGETITLTLTP 79 (79)
T ss_pred CcEEEeECCCCHHHHcCCCCCCEEEEECCEEC-----CCHHHHHHHHHHCCCceEEEEEEECCEEEEEEecC
Confidence 36899999999999999999999999999999 89999999988766788999999999887777653
No 17
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.08 E-value=7.8e-10 Score=88.78 Aligned_cols=68 Identities=31% Similarity=0.405 Sum_probs=61.5
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEeCCEEEEEEEeec
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVARGEQQFEIGVTPD 285 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R~G~~~~l~v~p~ 285 (448)
.|++|.+|.++|||++ ||++||+|++|||+++ .+++++.+.+.. .+++.+++++.|+|+..++++++.
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v-----~~~~~~~~~l~~~~~~~~v~l~v~r~g~~~~~~v~l~ 76 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPF-----KEAEELIDYIQSKKEGDTVKLKVKREEKELPEDLILK 76 (79)
T ss_pred cCEEEEEECCCCchhh-CCCCCCEEEEECCEEC-----CCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEe
Confidence 5789999999999997 8999999999999999 899999999975 568889999999999988888764
No 18
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.07 E-value=5e-10 Score=90.67 Aligned_cols=70 Identities=23% Similarity=0.412 Sum_probs=62.1
Q ss_pred CCceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCH--HHHHHHHHcCCCCcEEEEEEeC-CEEEEEEEeec
Q 040736 211 FPGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVV--SELVNAIKKSPKRNVLLKVARG-EQQFEIGVTPD 285 (448)
Q Consensus 211 ~~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~--~dl~~~L~~~~g~~V~l~V~R~-G~~~~l~v~p~ 285 (448)
..+++|.+|.++|||+++||++||+|++|||+++ .++ +|+.+.++..+++++.+++.|+ |+..+++++|.
T Consensus 12 ~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i-----~~~~~~~~~~~l~~~~~~~i~l~v~r~~~~~~~~~~~~~ 84 (85)
T cd00988 12 DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPV-----DGLSLEDVVKLLRGKAGTKVRLTLKRGDGEPREVTLTRL 84 (85)
T ss_pred CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEc-----CCCCHHHHHHHhcCCCCCEEEEEEEcCCCCEEEEEEEEC
Confidence 3578999999999999999999999999999999 777 8998888777788999999999 88888887763
No 19
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.05 E-value=9.7e-10 Score=88.01 Aligned_cols=68 Identities=26% Similarity=0.289 Sum_probs=57.2
Q ss_pred CCceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeCCEEEEEEEeec
Q 040736 211 FPGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARGEQQFEIGVTPD 285 (448)
Q Consensus 211 ~~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v~p~ 285 (448)
..+++|.+|.++|||+++||++||+|++|||+++ .++.++.+.+ ..++.+.+++.|+|+..++++++.
T Consensus 11 ~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v-----~~~~~~l~~~--~~~~~v~l~v~r~g~~~~~~v~~~ 78 (80)
T cd00990 11 EGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRV-----DALQDRLKEY--QAGDPVELTVFRDDRLIEVPLTLA 78 (80)
T ss_pred CCcEEEEEECCCChHHHhCCCCCCEEEEECCEEh-----HHHHHHHHhc--CCCCEEEEEEEECCEEEEEEEEec
Confidence 3568999999999999999999999999999999 6666654433 367789999999999888887764
No 20
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.96 E-value=3.2e-09 Score=86.51 Aligned_cols=65 Identities=42% Similarity=0.635 Sum_probs=57.9
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcC-CCCcEEEEEEeCCEEEEEE
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKS-PKRNVLLKVARGEQQFEIG 281 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~-~g~~V~l~V~R~G~~~~l~ 281 (448)
.|++|.+|.++|||+++|+++||+|++|||+++ .+++++.+.+... .++++.+++.|+|+..+++
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i-----~~~~~~~~~l~~~~~~~~i~l~v~r~g~~~~~~ 89 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPV-----KSVADLRRALAELKPGDKVTLTVLRGGKELTVT 89 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEEC-----CCHHHHHHHHHhcCCCCEEEEEEEECCEEEEee
Confidence 478999999999999999999999999999999 8999998888764 4788999999999876654
No 21
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=98.87 E-value=1.3e-08 Score=105.03 Aligned_cols=85 Identities=28% Similarity=0.467 Sum_probs=71.5
Q ss_pred CCceeeccc--------CCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeCCEEEEEEE
Q 040736 211 FPGVLVPEV--------RALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARGEQQFEIGV 282 (448)
Q Consensus 211 ~~gvvV~~V--------~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v 282 (448)
..|++|.+. ..+|||++||||+||+|++|||+++ ++++|+.+.++...++++.+++.|+|+..++++
T Consensus 104 t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V-----~s~~DL~~iL~~~~g~~V~LtV~R~Ge~~tv~V 178 (402)
T TIGR02860 104 TKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKI-----KNMDDLANLINKAGGEKLTLTIERGGKIIETVI 178 (402)
T ss_pred cCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEEC-----CCHHHHHHHHHhCCCCeEEEEEEECCEEEEEEE
Confidence 356666532 2369999999999999999999999 999999999988778899999999999999999
Q ss_pred eeccc-CCCCceEEEEecC
Q 040736 283 TPDEN-YDGTGKIGVQLSP 300 (448)
Q Consensus 283 ~p~~~-~~~~~~lGV~~~~ 300 (448)
+|... +++.+++|++..+
T Consensus 179 ~Pv~~~~d~~ykLGl~VrD 197 (402)
T TIGR02860 179 KPVKDKEEGRYRIGLYIRD 197 (402)
T ss_pred EEeeeCCCCCEEEEEEEEc
Confidence 87643 3567899998765
No 22
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.78 E-value=2e-08 Score=106.37 Aligned_cols=68 Identities=19% Similarity=0.107 Sum_probs=59.3
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEeCCEEEEEEEee
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVARGEQQFEIGVTP 284 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R~G~~~~l~v~p 284 (448)
..++|.+|.++|||++||+|+||+|++|||+++ ++++|+...+.. .+++++++++.|+|+.++.+++.
T Consensus 126 ~~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V-----~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l 194 (449)
T PRK10779 126 VRPVVGEIAPNSIAAQAQIAPGTELKAVDGIET-----PDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTL 194 (449)
T ss_pred CCccccccCCCCHHHHcCCCCCCEEEEECCEEc-----CCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEe
Confidence 346789999999999999999999999999999 899999887765 45788999999999877766655
No 23
>PRK10139 serine endoprotease; Provisional
Probab=98.78 E-value=2.7e-08 Score=105.51 Aligned_cols=70 Identities=34% Similarity=0.513 Sum_probs=64.4
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEeCCEEEEEEEeecc
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVARGEQQFEIGVTPDE 286 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R~G~~~~l~v~p~~ 286 (448)
.|++|.+|.++|||+++|||+||+|++|||+++ ++|+|+.+.+.. .+++++.+++.|+|+..+++++++.
T Consensus 290 ~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V-----~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~ 360 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPL-----NSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDT 360 (455)
T ss_pred CceEEEEECCCChHHHCCCCCCCEEEEECCEEC-----CCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECC
Confidence 589999999999999999999999999999999 899999998876 6788999999999999998888743
No 24
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.77 E-value=1.8e-08 Score=78.37 Aligned_cols=54 Identities=41% Similarity=0.579 Sum_probs=49.2
Q ss_pred ceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCH--HHHHHHHHcCCCCcEEEEE
Q 040736 213 GVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVV--SELVNAIKKSPKRNVLLKV 271 (448)
Q Consensus 213 gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~--~dl~~~L~~~~g~~V~l~V 271 (448)
+++|.+|.++|||+++||++||+|++|||+++ .++ +++.+.++...++++++++
T Consensus 14 ~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v-----~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 14 GVVVLSVEPGSPAERAGLQAGDVILAVNGTDV-----KNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CEEEEEeCCCCHHHHcCCCCCCEEEEECCEEC-----CCCCHHHHHHHHhhCCCCeEEEEE
Confidence 78999999999999999999999999999999 667 8999999887778888775
No 25
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.75 E-value=3.4e-08 Score=101.42 Aligned_cols=69 Identities=32% Similarity=0.518 Sum_probs=63.6
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEeCCEEEEEEEeec
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVARGEQQFEIGVTPD 285 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R~G~~~~l~v~p~ 285 (448)
.|++|.+|.++|||+++||++||+|++|||+++ .+++|+.+.+.. ++++++++++.|+|+.+++++++.
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V-----~s~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~ 347 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDV-----IGAEELMDRIAETRPGSKVMVTVLRQGKQLELPVTID 347 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEc-----CCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEec
Confidence 589999999999999999999999999999999 899999999876 678899999999999998888764
No 26
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.74 E-value=3.9e-08 Score=96.81 Aligned_cols=68 Identities=24% Similarity=0.317 Sum_probs=61.5
Q ss_pred CCceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEeCCEEEEEEEe
Q 040736 211 FPGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVARGEQQFEIGVT 283 (448)
Q Consensus 211 ~~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R~G~~~~l~v~ 283 (448)
..|+.|..+.++|||+++|||+||+|++|||+++ .+++++.+.+.+ .++++++++|+|+|+.+++.+.
T Consensus 190 ~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i-----~~~~~~~~~l~~~~~~~~v~l~V~R~G~~~~i~v~ 258 (259)
T TIGR01713 190 LEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDL-----RDPEQAFQALQMLREETNLTLTVERDGQREDIYVR 258 (259)
T ss_pred eeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEc-----CCHHHHHHHHHhcCCCCeEEEEEEECCEEEEEEEE
Confidence 3689999999999999999999999999999999 899999988877 4678899999999998887764
No 27
>PRK10898 serine endoprotease; Provisional
Probab=98.73 E-value=4.4e-08 Score=100.63 Aligned_cols=69 Identities=26% Similarity=0.393 Sum_probs=63.7
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEeCCEEEEEEEeec
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVARGEQQFEIGVTPD 285 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R~G~~~~l~v~p~ 285 (448)
.|++|.+|.++|||+++||++||+|++|||+++ .+++|+.+.+.. .+++++++++.|+|+..++++++.
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V-----~s~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~ 348 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPA-----ISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQ 348 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEc-----CCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEec
Confidence 689999999999999999999999999999999 899999888876 678899999999999988888775
No 28
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.66 E-value=8.9e-08 Score=100.76 Aligned_cols=70 Identities=39% Similarity=0.501 Sum_probs=63.7
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEeCCEEEEEEEeecc
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVARGEQQFEIGVTPDE 286 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R~G~~~~l~v~p~~ 286 (448)
.|++|.+|.++|||+++||++||+|++|||+++ .+++|+.+.+.. .+++++++++.|+|+..++++++..
T Consensus 257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i-----~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~ 327 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKPI-----SSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGA 327 (428)
T ss_pred CceEEEEccCCCChHHcCCCCCCEEEEECCEEc-----CCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECc
Confidence 689999999999999999999999999999999 899999988876 5688999999999999988887643
No 29
>PRK10942 serine endoprotease; Provisional
Probab=98.65 E-value=9.8e-08 Score=101.69 Aligned_cols=70 Identities=24% Similarity=0.386 Sum_probs=63.5
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEeCCEEEEEEEeecc
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVARGEQQFEIGVTPDE 286 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R~G~~~~l~v~p~~ 286 (448)
.|++|.+|.++|||++|||++||+|++|||+++ .+++|+.+.+.. .+++++++++.|+|+.++++++...
T Consensus 311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V-----~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~ 381 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI-----SSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQ 381 (473)
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEEC-----CCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCc
Confidence 589999999999999999999999999999999 899999988876 5688999999999999888887643
No 30
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.61 E-value=1.3e-07 Score=98.32 Aligned_cols=72 Identities=21% Similarity=0.318 Sum_probs=60.0
Q ss_pred ecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEE-eCCEEEEEEEeecccCCCCceE
Q 040736 216 VPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVA-RGEQQFEIGVTPDENYDGTGKI 294 (448)
Q Consensus 216 V~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~-R~G~~~~l~v~p~~~~~~~~~l 294 (448)
|.+|.|+|+|+++||++||+|++|||+++ .+|.|+...+. ++.+++++. |+|+..++++.++.. .-+
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V-----~Dw~D~~~~l~---~e~l~L~V~~rdGe~~~l~Ie~~~d----edl 69 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAP-----RDLIDYQFLCA---DEELELEVLDANGESHQIEIEKDLD----EDL 69 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEEC-----CCHHHHHHHhc---CCcEEEEEEcCCCeEEEEEEecCCC----CCC
Confidence 67899999999999999999999999999 89999877774 367899996 899988888887543 236
Q ss_pred EEEec
Q 040736 295 GVQLS 299 (448)
Q Consensus 295 GV~~~ 299 (448)
|+.+.
T Consensus 70 G~~f~ 74 (433)
T TIGR03279 70 GLEFT 74 (433)
T ss_pred cEEec
Confidence 77654
No 31
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=98.59 E-value=1.5e-07 Score=84.07 Aligned_cols=85 Identities=25% Similarity=0.395 Sum_probs=66.2
Q ss_pred CCceeecccCCCChhhhCCCCC-CCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEe--CCEEEEEEEeeccc
Q 040736 211 FPGVLVPEVRALSAASRDGLFP-GDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVAR--GEQQFEIGVTPDEN 287 (448)
Q Consensus 211 ~~gvvV~~V~~gSpA~~AGL~~-GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R--~G~~~~l~v~p~~~ 287 (448)
..+.-|.+|.|+|||++|||++ .|.|+.+|+... ++.+++.+.++.+.++++.+.|.+ ..+.++++++|...
T Consensus 42 ~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l-----~~~~~l~~~v~~~~~~~l~L~Vyns~~~~vR~V~i~P~~~ 116 (138)
T PF04495_consen 42 EEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLL-----DDEDDLFELVEANENKPLQLYVYNSKTDSVREVTITPSRN 116 (138)
T ss_dssp CCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE-------STCHHHHHHHHTTTS-EEEEEEETTTTCEEEEEE---TT
T ss_pred cceEEEeEecCCCHHHHCCccccccEEEEccceec-----CCHHHHHHHHHHcCCCcEEEEEEECCCCeEEEEEEEcCCC
Confidence 4577899999999999999999 599999999988 677899999999999999999975 45778999999888
Q ss_pred CCCCceEEEEecC
Q 040736 288 YDGTGKIGVQLSP 300 (448)
Q Consensus 288 ~~~~~~lGV~~~~ 300 (448)
+.+.+.+|..+..
T Consensus 117 WgG~GlLGc~ig~ 129 (138)
T PF04495_consen 117 WGGRGLLGCHIGY 129 (138)
T ss_dssp SSSSTSSSEEEE-
T ss_pred CCCCeeeeEEecc
Confidence 8899999998754
No 32
>PRK10139 serine endoprotease; Provisional
Probab=98.58 E-value=1.6e-07 Score=99.55 Aligned_cols=65 Identities=28% Similarity=0.464 Sum_probs=59.1
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeCCEEEEEEE
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARGEQQFEIGV 282 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v 282 (448)
.|++|.+|.++|||+++||++||+|++|||+++ .+|+|+.+.+++++ +++.++++|+|+...+.+
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v-----~~~~~~~~~l~~~~-~~v~l~v~R~g~~~~~~~ 454 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRV-----NSIAEMRKVLAAKP-AIIALQIVRGNESIYLLL 454 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEEc-----CCHHHHHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence 478999999999999999999999999999999 99999999998755 789999999999877654
No 33
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.56 E-value=2.8e-07 Score=95.96 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=60.4
Q ss_pred ceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeCCEEEEEEEeec
Q 040736 213 GVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARGEQQFEIGVTPD 285 (448)
Q Consensus 213 gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v~p~ 285 (448)
+++|.+|.++|||+++||++||+|++|||+++.+ .+++++.+.++...++++++++.|+|+..+++++..
T Consensus 103 g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~---~~~~~~~~~l~g~~g~~v~ltv~r~g~~~~~~l~r~ 172 (389)
T PLN00049 103 GLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEG---LSLYEAADRLQGPEGSSVELTLRRGPETRLVTLTRE 172 (389)
T ss_pred cEEEEEeCCCChHHHcCCCCCCEEEEECCEECCC---CCHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEee
Confidence 7899999999999999999999999999999932 356788787877778899999999998887777653
No 34
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.52 E-value=1.6e-07 Score=95.74 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=57.1
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCH--HHHHHHHHcCCCCcEEEEEEeCCEEEEEEEee
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVV--SELVNAIKKSPKRNVLLKVARGEQQFEIGVTP 284 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~--~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v~p 284 (448)
.+++|.+|.++|||++|||++||+|++|||+++ .+| +++.+.+....++++++++.|+|+..++++++
T Consensus 62 ~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v-----~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~l 131 (334)
T TIGR00225 62 GEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSV-----AGMSLDDAVALIRGKKGTKVSLEILRAGKSKPLTFTL 131 (334)
T ss_pred CEEEEEEeCCCChHHHcCCCCCCEEEEECCEEC-----CCCCHHHHHHhccCCCCCEEEEEEEeCCCCceEEEEE
Confidence 468899999999999999999999999999999 554 67777777677889999999998655555444
No 35
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.51 E-value=2.9e-07 Score=96.89 Aligned_cols=65 Identities=38% Similarity=0.521 Sum_probs=59.2
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEeCCEEEEEE
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVARGEQQFEIG 281 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R~G~~~~l~ 281 (448)
.|++|.+|.++|||+++||++||+|++|||+++ .+++|+.+.+++ ..++++++++.|+|+...+.
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V-----~s~~d~~~~l~~~~~g~~v~l~v~R~g~~~~~~ 427 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPV-----SSVAELRKVLDRAKKGGRVALLILRGGATIFVT 427 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEc-----CCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence 589999999999999999999999999999999 899999999986 46889999999999877654
No 36
>PRK10942 serine endoprotease; Provisional
Probab=98.46 E-value=5.1e-07 Score=96.28 Aligned_cols=65 Identities=28% Similarity=0.461 Sum_probs=58.8
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeCCEEEEEEE
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARGEQQFEIGV 282 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v 282 (448)
.|++|.+|.++|||+++||++||+|++|||++| .+++|+.+.+++.+ +.+.++|+|+|+.+.+.+
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V-----~s~~dl~~~l~~~~-~~v~l~V~R~g~~~~v~~ 472 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPV-----KNIAELRKILDSKP-SVLALNIQRGDSSIYLLM 472 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEc-----CCHHHHHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence 478999999999999999999999999999999 89999999998754 789999999998876654
No 37
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.46 E-value=4.7e-07 Score=72.32 Aligned_cols=56 Identities=38% Similarity=0.445 Sum_probs=46.5
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEE
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKV 271 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V 271 (448)
.+++|.+|.++|||+++|+++||+|++|||+++.. .+++++.+.++...+ ++++++
T Consensus 26 ~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~---~~~~~~~~~l~~~~~-~v~l~v 81 (82)
T cd00992 26 GGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEG---LTHEEAVELLKNSGD-EVTLTV 81 (82)
T ss_pred CCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCc---cCHHHHHHHHHhCCC-eEEEEE
Confidence 46899999999999999999999999999999921 289999998886443 566554
No 38
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.45 E-value=4e-07 Score=73.25 Aligned_cols=57 Identities=37% Similarity=0.458 Sum_probs=48.3
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEE
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVA 272 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~ 272 (448)
.+++|.+|.++|||+++||++||+|++|||+++.+ .+.+++.+.++...+ +++++|+
T Consensus 25 ~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~---~~~~~~~~~l~~~~~-~v~L~V~ 81 (81)
T PF00595_consen 25 KGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRG---MSHDEVVQLLKSASN-PVTLTVQ 81 (81)
T ss_dssp EEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTT---SBHHHHHHHHHHSTS-EEEEEEE
T ss_pred CCEEEEEEeCCChHHhcccchhhhhheeCCEeCCC---CCHHHHHHHHHCCCC-cEEEEEC
Confidence 47899999999999999999999999999999943 466788888887555 7888764
No 39
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=9.7e-07 Score=82.65 Aligned_cols=84 Identities=24% Similarity=0.343 Sum_probs=68.6
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeCCEEEEEEEeecccCCCC
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARGEQQFEIGVTPDENYDGT 291 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v~p~~~~~~~ 291 (448)
+-++|.+|.|+|||++|||+.||.|+++.+..-. +......+....+...++.+.+++.|.|+...+.++|.. +.|+
T Consensus 139 ~Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sg--n~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~~-W~Gr 215 (231)
T KOG3129|consen 139 PFAVVDSVVPGSPADEAGLCVGDEILKFGNVHSG--NFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPKK-WQGR 215 (231)
T ss_pred ceEEEeecCCCChhhhhCcccCceEEEecccccc--cchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCccc-ccCC
Confidence 3468999999999999999999999999876541 112344555555667789999999999999999999986 6799
Q ss_pred ceEEEEe
Q 040736 292 GKIGVQL 298 (448)
Q Consensus 292 ~~lGV~~ 298 (448)
|.+|..+
T Consensus 216 GLLGC~~ 222 (231)
T KOG3129|consen 216 GLLGCNY 222 (231)
T ss_pred cceeeee
Confidence 9999884
No 40
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.40 E-value=8e-07 Score=71.05 Aligned_cols=58 Identities=43% Similarity=0.542 Sum_probs=46.0
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCH--HHHHHHHHcCCCCcEEEEEEeCC
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVV--SELVNAIKKSPKRNVLLKVARGE 275 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~--~dl~~~L~~~~g~~V~l~V~R~G 275 (448)
.+++|..|.++|||+++||++||+|++|||+++ .++ .+....++. .++++++++.|++
T Consensus 26 ~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v-----~~~~~~~~~~~~~~-~~~~~~l~i~r~~ 85 (85)
T smart00228 26 GGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSV-----EGLTHLEAVDLLKK-AGGKVTLTVLRGG 85 (85)
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEEC-----CCCCHHHHHHHHHh-CCCeEEEEEEeCC
Confidence 578999999999999999999999999999999 444 333333443 3458889888864
No 41
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.38 E-value=8.6e-07 Score=93.21 Aligned_cols=66 Identities=24% Similarity=0.350 Sum_probs=57.9
Q ss_pred CCceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeCCEEEEEEE
Q 040736 211 FPGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARGEQQFEIGV 282 (448)
Q Consensus 211 ~~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v 282 (448)
..+++|.+|.++|||++||+|+||+|+++||+++ .+++|+.+.+.... .++.+++.|+++..++++
T Consensus 127 ~~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v-----~~~~dl~~~ia~~~-~~v~~~I~r~g~~~~l~v 192 (420)
T TIGR00054 127 EVGPVIELLDKNSIALEAGIEPGDEILSVNGNKI-----PGFKDVRQQIADIA-GEPMVEILAERENWTFEV 192 (420)
T ss_pred CCCceeeccCCCCHHHHcCCCCCCEEEEECCEEc-----CCHHHHHHHHHhhc-ccceEEEEEecCceEecc
Confidence 4688999999999999999999999999999999 89999998887766 678899999887665443
No 42
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=2.7e-06 Score=89.01 Aligned_cols=71 Identities=30% Similarity=0.467 Sum_probs=60.6
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeC--CEEEEEEEeec
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARG--EQQFEIGVTPD 285 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~--G~~~~l~v~p~ 285 (448)
.++.|.++.+++||++||+++||+|++|||+++.+ .+.++..+.++..+|+.+++++.|. ++.++++++.+
T Consensus 112 ~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~---~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l~Re 184 (406)
T COG0793 112 GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGG---VSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTLTRE 184 (406)
T ss_pred CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccC---CCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEEEEE
Confidence 57889999999999999999999999999999932 5567888899989999999999996 45666666554
No 43
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=98.19 E-value=6.8e-06 Score=81.60 Aligned_cols=92 Identities=29% Similarity=0.445 Sum_probs=72.7
Q ss_pred cccccCCCCceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEe-CCEEEEEE
Q 040736 204 GLPVQDAFPGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVAR-GEQQFEIG 281 (448)
Q Consensus 204 G~p~~~~~~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R-~G~~~~l~ 281 (448)
|.|+.....|+.+..|..+||+... |++||.|++|||+++ .+.+|+.++++. ++|++++++++| +++....+
T Consensus 122 ~~pv~~~y~gvyv~~v~~~~~~~gk-l~~gD~i~avdg~~f-----~s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~ 195 (342)
T COG3480 122 GKPVEVTYAGVYVLSVIDNSPFKGK-LEAGDTIIAVDGEPF-----TSSDELIDYVSSKKPGDEVTIDYERHNETPEIVT 195 (342)
T ss_pred CCceEEEEeeEEEEEccCCcchhce-eccCCeEEeeCCeec-----CCHHHHHHHHhccCCCCeEEEEEEeccCCCceEE
Confidence 4454444568899999999999885 999999999999999 899999999986 679999999997 66655555
Q ss_pred Eeeccc-CCCCceEEEEecCC
Q 040736 282 VTPDEN-YDGTGKIGVQLSPN 301 (448)
Q Consensus 282 v~p~~~-~~~~~~lGV~~~~~ 301 (448)
++.... ++++..+||.+...
T Consensus 196 ~tl~~~~~~g~~giGIsl~d~ 216 (342)
T COG3480 196 ITLIKNDDNGKAGIGISLVDA 216 (342)
T ss_pred EEEEeeccCCcceeeeEeecC
Confidence 544433 45778899987543
No 44
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=7.7e-06 Score=83.71 Aligned_cols=71 Identities=35% Similarity=0.515 Sum_probs=64.4
Q ss_pred CCceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEeCCEEEEEEEeecc
Q 040736 211 FPGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVARGEQQFEIGVTPDE 286 (448)
Q Consensus 211 ~~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R~G~~~~l~v~p~~ 286 (448)
..|++|.+|.++|||+++|+++||+|+++||+++ .+..++.+.+.. .+++++.+++.|+|+..+++++...
T Consensus 269 ~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v-----~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~~~~v~l~~ 340 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPV-----ASLSDLVAAVASNRPGDEVALKLLRGGKERELAVTLGD 340 (347)
T ss_pred CCceEEEecCCCChHHHcCCCCCCEEEEECCEEc-----cCHHHHHHHHhccCCCCEEEEEEEECCEEEEEEEEecC
Confidence 4578999999999999999999999999999999 899999988876 4589999999999999999888754
No 45
>COG1994 SpoIVFB Zn-dependent proteases [General function prediction only]
Probab=98.05 E-value=1.7e-05 Score=76.93 Aligned_cols=40 Identities=35% Similarity=0.579 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhHHHHHHHHHHh
Q 040736 366 IDGLYQFAAVLNINLAVINLLPLPALDGGSLALILIEAAR 405 (448)
Q Consensus 366 ~~~ll~fialISi~Lgi~NLLPIP~LDGG~Il~~liE~i~ 405 (448)
+..++...+.+|+-|++|||+|+|||||||++..+.+...
T Consensus 136 ~~~~~~~la~~Nl~L~lFNLiPi~PLDGg~vlr~~~~~~~ 175 (230)
T COG1994 136 LFAFLAALALVNLVLALFNLLPIPPLDGGRVLRALLPRRY 175 (230)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHccHHH
Confidence 4556778999999999999999999999999988876554
No 46
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.03 E-value=1.3e-05 Score=88.41 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=57.3
Q ss_pred CceeecccCCCChhhhC-CCCCCCEEEEEC--CeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeC---CEEEEEEEeec
Q 040736 212 PGVLVPEVRALSAASRD-GLFPGDVILSVN--GNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARG---EQQFEIGVTPD 285 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~A-GL~~GDvIlsIn--G~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~---G~~~~l~v~p~ 285 (448)
.+++|.+|.|||||+++ ||++||+|++|| |+++.+....+.+++.+.++...|.+|+++|.|+ ++..+++++.+
T Consensus 255 ~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~R~ 334 (667)
T PRK11186 255 DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLTRD 334 (667)
T ss_pred CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceEEEEEEee
Confidence 35788999999999998 999999999999 5544211123457888889888899999999983 45666766643
No 47
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.76 E-value=9.3e-05 Score=61.12 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=39.4
Q ss_pred CChhhhCCCC--CCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeCC-EEEEEE
Q 040736 222 LSAASRDGLF--PGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARGE-QQFEIG 281 (448)
Q Consensus 222 gSpA~~AGL~--~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~G-~~~~l~ 281 (448)
.||-.+.|+. +||.|++|||+++ ..-.++...+..+.|+.+.+++.+.+ +.+++.
T Consensus 30 ~sPL~~pGv~v~~GD~I~aInG~~v-----~~~~~~~~lL~~~agk~V~Ltv~~~~~~~R~v~ 87 (88)
T PF14685_consen 30 RSPLAQPGVDVREGDYILAINGQPV-----TADANPYRLLEGKAGKQVLLTVNRKPGGARTVV 87 (88)
T ss_dssp B-GGGGGS----TT-EEEEETTEE------BTTB-HHHHHHTTTTSEEEEEEE-STT-EEEEE
T ss_pred cCCccCCCCCCCCCCEEEEECCEEC-----CCCCCHHHHhcccCCCEEEEEEecCCCCceEEE
Confidence 3777887765 9999999999999 66677888999899999999999866 555554
No 48
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.74 E-value=0.00011 Score=72.76 Aligned_cols=61 Identities=16% Similarity=0.370 Sum_probs=49.5
Q ss_pred ccCCCCh---hhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEeCCEEEEEEEe
Q 040736 218 EVRALSA---ASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVARGEQQFEIGVT 283 (448)
Q Consensus 218 ~V~~gSp---A~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R~G~~~~l~v~ 283 (448)
.+.|+.. -+++|||+||++++|||.++ .+.++..+.+++ .....++++|+|||+..++.+.
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL-----~D~~qa~~l~~~L~~~tei~ltVeRdGq~~~i~i~ 274 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQDF-----TDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIA 274 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCeeC-----CCHHHHHHHHHHhccCCeEEEEEEECCEEEEEEEE
Confidence 4556643 46899999999999999999 777777777665 4567899999999999888764
No 49
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]
Probab=97.47 E-value=0.00032 Score=75.69 Aligned_cols=67 Identities=30% Similarity=0.480 Sum_probs=60.8
Q ss_pred eeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeCCEEEEEEEeecc
Q 040736 214 VLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARGEQQFEIGVTPDE 286 (448)
Q Consensus 214 vvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v~p~~ 286 (448)
.+|..|.++|||++. |++||++++||++-+ .++.++.+.+.+..|+.+.++|+|+|+..+++++.+.
T Consensus 305 LvV~~vL~~gpa~k~-Le~GDillavN~t~l-----~df~~l~~iLDegvgk~l~LtI~Rggqelel~vtvqd 371 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKK-LEPGDILLAVNSTCL-----NDFEALEQILDEGVGKNLELTIQRGGQELELTVTVQD 371 (955)
T ss_pred EEEEEeccCCchhhc-cCCCcEEEEEcceeh-----HHHHHHHHHHhhccCceEEEEEEeCCEEEEEEEEecc
Confidence 567889999999997 999999999999988 8888888888888899999999999999999888764
No 50
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=97.40 E-value=0.00028 Score=66.99 Aligned_cols=63 Identities=29% Similarity=0.490 Sum_probs=47.3
Q ss_pred HHHHHhhHHHHHHHHhCCccceEeeeccceeeeeccCceeEEEeEEe-ccceeecCCCCCCCCCCCCChhhhhCCCccce
Q 040736 99 IIIVHESGHFLAAYLQGIHVSKFAVGFGPILAKFSANNVEYSLRAFP-LGGFVGFPDNDPESGIPVDDENLLKNRPILDR 177 (448)
Q Consensus 99 ~i~vHE~gH~~~A~~~gv~V~~fsiGfGp~l~~~~~~~t~y~i~~~p-lGg~v~~~~~~~~~~~~~~~~~~f~~~~~~~r 177 (448)
.+++||+||+++|..+|-+++++.+ .| -+|.+...+ .+.+++
T Consensus 24 ~t~~HE~gHal~a~l~G~~v~~i~l--------------------~~~~~G~~~~~~-----------------~~~~~~ 66 (200)
T PF13398_consen 24 VTFVHELGHALAALLTGGRVKGIVL--------------------FPDGSGVTVSSG-----------------PSGIGR 66 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCcceEEE--------------------EeCCCceEEEec-----------------CCCcch
Confidence 3789999999999999999999544 33 245554322 234567
Q ss_pred eeeeecchhHHHHHHHHHHhh
Q 040736 178 VIVISAGVVANIVFAFVIIFT 198 (448)
Q Consensus 178 ~~v~~aGp~~N~l~a~v~~~~ 198 (448)
+++..||+.+..+++.+++..
T Consensus 67 ~~i~~aGyl~~~l~g~~~~~~ 87 (200)
T PF13398_consen 67 FLIALAGYLGPALFGLLLLWL 87 (200)
T ss_pred hHHhcccchHHHHHHHHHHHH
Confidence 889999999999988776543
No 51
>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]
Probab=97.28 E-value=0.00024 Score=59.31 Aligned_cols=47 Identities=34% Similarity=0.338 Sum_probs=37.2
Q ss_pred CCceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHH
Q 040736 211 FPGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIK 260 (448)
Q Consensus 211 ~~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~ 260 (448)
..|+.|++|.++|||+.|||+.+|.|+++||...+- -+-+...+.+.
T Consensus 58 D~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTM---vTHd~Avk~i~ 104 (124)
T KOG3553|consen 58 DKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTM---VTHDQAVKRIT 104 (124)
T ss_pred CccEEEEEeccCChhhhhcceecceEEEecCceeEE---EEhHHHHHHhh
Confidence 468999999999999999999999999999987611 23344455554
No 52
>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0017 Score=68.68 Aligned_cols=69 Identities=28% Similarity=0.384 Sum_probs=60.1
Q ss_pred ceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEeCCEEEEEEEeecc
Q 040736 213 GVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVARGEQQFEIGVTPDE 286 (448)
Q Consensus 213 gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R~G~~~~l~v~p~~ 286 (448)
++++.+|.|++++..+++++||+|.+|||++| .+..++.+.++. ..++++.+..+|+.+..++.+.++.
T Consensus 399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V-----~n~~~l~~~i~~~~~~~~v~vl~~~~~e~~tl~Il~~~ 468 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKPV-----KNLKHLYELIEECSTEDKVAVLDRRSAEDATLEILPEH 468 (473)
T ss_pred EEEEEEeccCCCcccccccCCCEEEEECCEEe-----echHHHHHHHHhcCcCceEEEEEecCccceeEEecccc
Confidence 67889999999999999999999999999999 889999999986 3456777777888888888887753
No 53
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.96 E-value=0.0015 Score=69.25 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=51.0
Q ss_pred ceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeCCEEEEEEEeecc
Q 040736 213 GVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARGEQQFEIGVTPDE 286 (448)
Q Consensus 213 gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v~p~~ 286 (448)
+.+|..|.++|||++|||.+||+|++|||.. +++. ..+.++.+.+++.|.|+.+++.+++..
T Consensus 463 ~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s------~~l~------~~~~~d~i~v~~~~~~~L~e~~v~~~~ 524 (558)
T COG3975 463 HEKITFVFPGGPAYKAGLSPGDKIVAINGIS------DQLD------RYKVNDKIQVHVFREGRLREFLVKLGG 524 (558)
T ss_pred eeEEEecCCCChhHhccCCCccEEEEEcCcc------cccc------ccccccceEEEEccCCceEEeecccCC
Confidence 4688999999999999999999999999982 2222 124578899999999999999888754
No 54
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=96.81 E-value=0.0036 Score=60.27 Aligned_cols=65 Identities=18% Similarity=0.278 Sum_probs=52.9
Q ss_pred ceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEeCCEEEEEEE
Q 040736 213 GVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVARGEQQFEIGV 282 (448)
Q Consensus 213 gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R~G~~~~l~v 282 (448)
|..+.-..++|.-++.|||+||+-+++|+..+ ++.+++...++. ..-+.+.+|+.|+|+...+.+
T Consensus 208 Gyr~~pgkd~slF~~sglq~GDIavaiNnldl-----tdp~~m~~llq~l~~m~s~qlTv~R~G~rhdInV 273 (275)
T COG3031 208 GYRFEPGKDGSLFYKSGLQRGDIAVAINNLDL-----TDPEDMFRLLQMLRNMPSLQLTVIRRGKRHDINV 273 (275)
T ss_pred EEEecCCCCcchhhhhcCCCcceEEEecCccc-----CCHHHHHHHHHhhhcCcceEEEEEecCccceeee
Confidence 33444456678889999999999999999999 788888888876 345679999999998877765
No 55
>PF12812 PDZ_1: PDZ-like domain
Probab=95.61 E-value=0.024 Score=45.77 Aligned_cols=46 Identities=28% Similarity=0.335 Sum_probs=39.3
Q ss_pred eeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCC
Q 040736 214 VLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPK 264 (448)
Q Consensus 214 vvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g 264 (448)
.++.....++++.+.|+..|-+|++|||+++ .+.+++.+.+++-++
T Consensus 32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt-----~~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGGISKGFIITSVNGKPT-----PDLDDFIKVVKKIPD 77 (78)
T ss_pred EEEEEecCCChhhhCCCCCCeEEEeECCcCC-----cCHHHHHHHHHhCCC
Confidence 4566777889988877999999999999999 899999999987553
No 56
>KOG3834 consensus Golgi reassembly stacking protein GRASP65, contains PDZ domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.024 Score=58.78 Aligned_cols=81 Identities=28% Similarity=0.407 Sum_probs=59.9
Q ss_pred CceeecccCCCChhhhCCCCCC-CEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEe--CCEEEEEEEeecccC
Q 040736 212 PGVLVPEVRALSAASRDGLFPG-DVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVAR--GEQQFEIGVTPDENY 288 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~G-DvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R--~G~~~~l~v~p~~~~ 288 (448)
.|.-|..|..||+|.+||+.+= |-|++|||..+. ++-+.+.+.++.+..+ |++++.. .-+.+.+.+++...+
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~----~dnd~Lk~llk~~sek-Vkltv~n~kt~~~R~v~I~ps~~w 89 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLN----KDNDTLKALLKANSEK-VKLTVYNSKTQEVRIVEIVPSNNW 89 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCccccc----CchHHHHHHHHhcccc-eEEEEEecccceeEEEEecccccc
Confidence 4567889999999999999986 799999999992 2334455555544444 9998864 446777888887655
Q ss_pred CCCceEEEEe
Q 040736 289 DGTGKIGVQL 298 (448)
Q Consensus 289 ~~~~~lGV~~ 298 (448)
.++ .+|+.+
T Consensus 90 ggq-llGvsv 98 (462)
T KOG3834|consen 90 GGQ-LLGVSV 98 (462)
T ss_pred ccc-ccceEE
Confidence 555 889875
No 57
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=95.50 E-value=0.02 Score=62.55 Aligned_cols=57 Identities=30% Similarity=0.312 Sum_probs=46.7
Q ss_pred eeecccCCCChhhhCC-CCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeC
Q 040736 214 VLVPEVRALSAASRDG-LFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARG 274 (448)
Q Consensus 214 vvV~~V~~gSpA~~AG-L~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~ 274 (448)
.-|..+.+||||++.| |+.||+|++|||+.|-+ .+-.|+++.++. .|-+|+++|.-.
T Consensus 780 sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~---lsHadiv~LIKd-aGlsVtLtIip~ 837 (984)
T KOG3209|consen 780 SGIGRIIEGSPADRCGKLKVGDRILAVNGQSILN---LSHADIVSLIKD-AGLSVTLTIIPP 837 (984)
T ss_pred CCccccccCChhHhhccccccceEEEecCeeeec---cCchhHHHHHHh-cCceEEEEEcCh
Confidence 3478899999999966 99999999999999943 566788888875 567888888653
No 58
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=95.45 E-value=0.014 Score=62.58 Aligned_cols=59 Identities=31% Similarity=0.369 Sum_probs=45.3
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEe
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVAR 273 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R 273 (448)
.|+.|..|.++|||++-|||.||.|++||..+..+ -.-+|.+..|.. .+|+.+++..++
T Consensus 429 VGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~n---l~REeAVlfLL~lPkGEevtilaQ~ 488 (1027)
T KOG3580|consen 429 VGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRN---LVREEAVLFLLELPKGEEVTILAQS 488 (1027)
T ss_pred eeEEEeecccCCchhhccccccceeEEeccccchh---hhHHHHHHHHhcCCCCcEEeehhhh
Confidence 47889999999999999999999999999998832 223455555544 568888876543
No 59
>KOG3834 consensus Golgi reassembly stacking protein GRASP65, contains PDZ domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=0.049 Score=56.60 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=63.3
Q ss_pred ecccCCCChhhhCCCC-CCCEEEEE-CCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeC--CEEEEEEEeecccCCCC
Q 040736 216 VPEVRALSAASRDGLF-PGDVILSV-NGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARG--EQQFEIGVTPDENYDGT 291 (448)
Q Consensus 216 V~~V~~gSpA~~AGL~-~GDvIlsI-nG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~--G~~~~l~v~p~~~~~~~ 291 (448)
|-+|.++|||+.||++ -+|.|+.+ |.+ . ...+|+...+..+.++.+++.|... ...++++++|...+.++
T Consensus 113 vl~V~p~SPaalAgl~~~~DYivG~~~~~-~-----~~~eDl~~lIeshe~kpLklyVYN~D~d~~ReVti~pn~awGge 186 (462)
T KOG3834|consen 113 VLSVEPNSPAALAGLRPYTDYIVGIWDAV-M-----HEEEDLFTLIESHEGKPLKLYVYNHDTDSCREVTITPNSAWGGE 186 (462)
T ss_pred eeecCCCCHHHhcccccccceEecchhhh-c-----cchHHHHHHHHhccCCCcceeEeecCCCccceEEeecccccccc
Confidence 6689999999999999 56999999 544 3 5778999999999999999988753 35688889987766778
Q ss_pred ceEEEEec
Q 040736 292 GKIGVQLS 299 (448)
Q Consensus 292 ~~lGV~~~ 299 (448)
+.+|-.+.
T Consensus 187 g~lGCgIG 194 (462)
T KOG3834|consen 187 GALGCGIG 194 (462)
T ss_pred ceeccccc
Confidence 88876654
No 60
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=94.74 E-value=0.051 Score=59.20 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=45.4
Q ss_pred ceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEe
Q 040736 213 GVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVAR 273 (448)
Q Consensus 213 gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R 273 (448)
.+.|..|.+|+||.++.+++||++++|||.|| .+.++..+.++...++ +...++|
T Consensus 399 ~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi-----~s~~q~~~~~~s~~~~-~~~l~~~ 453 (1051)
T KOG3532|consen 399 AVKVCTVEDNSLADKAAFKPGDVLVAINNVPI-----RSERQATRFLQSTTGD-LTVLVER 453 (1051)
T ss_pred EEEEEEecCCChhhHhcCCCcceEEEecCccc-----hhHHHHHHHHHhcccc-eEEEEee
Confidence 46788999999999999999999999999999 8999998888865543 4444444
No 61
>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]
Probab=94.43 E-value=0.045 Score=61.38 Aligned_cols=55 Identities=27% Similarity=0.375 Sum_probs=45.3
Q ss_pred eeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEe
Q 040736 214 VLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVAR 273 (448)
Q Consensus 214 vvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R 273 (448)
++|..|.+|+|+.. .|+|||.|++|||.+|.+ ..++.+++.++.-. +.+.++|.+
T Consensus 77 viVr~VT~GGps~G-KL~PGDQIl~vN~Epv~d---aprervIdlvRace-~sv~ltV~q 131 (1298)
T KOG3552|consen 77 VIVRFVTEGGPSIG-KLQPGDQILAVNGEPVKD---APRERVIDLVRACE-SSVNLTVCQ 131 (1298)
T ss_pred eEEEEecCCCCccc-cccCCCeEEEecCccccc---ccHHHHHHHHHHHh-hhcceEEec
Confidence 57889999999987 499999999999999943 67888888887533 567788876
No 62
>COG1994 SpoIVFB Zn-dependent proteases [General function prediction only]
Probab=93.85 E-value=0.046 Score=53.02 Aligned_cols=72 Identities=24% Similarity=0.159 Sum_probs=49.4
Q ss_pred HHHHHHHHhhHHHHHHHHhCCccceEeeeccceeeeeccCceeEEEeEEeccceeecCCCCCCCCCCCCChhhhhCCCcc
Q 040736 96 LTAIIIVHESGHFLAAYLQGIHVSKFAVGFGPILAKFSANNVEYSLRAFPLGGFVGFPDNDPESGIPVDDENLLKNRPIL 175 (448)
Q Consensus 96 l~~~i~vHE~gH~~~A~~~gv~V~~fsiGfGp~l~~~~~~~t~y~i~~~plGg~v~~~~~~~~~~~~~~~~~~f~~~~~~ 175 (448)
+...++.||+||...++..|+++..- .+.++||+..+.+. |.+.+.+... +.
T Consensus 51 l~~rl~l~~~gh~~~~~~~~~~l~~~--------------------~i~~~~g~~~~~~~-------~v~~~~~~~~-~~ 102 (230)
T COG1994 51 LAHRLVLHPLGHSDEAGRLGLKLLLA--------------------LLFGFGGFGFLKPV-------PVNPRGEFLI-RL 102 (230)
T ss_pred HhHHHhhhHhhHHHHHHHHHHHHHHH--------------------HHHhccceeeecCc-------CcCHHHHhhh-hc
Confidence 45567899999999999998887652 22246776655443 3344444332 25
Q ss_pred ceeeeeec-chhHHHHHHHHH
Q 040736 176 DRVIVISA-GVVANIVFAFVI 195 (448)
Q Consensus 176 ~r~~v~~a-Gp~~N~l~a~v~ 195 (448)
+..++..| ||+.|+.++++.
T Consensus 103 ~g~lvs~algpl~ni~la~~~ 123 (230)
T COG1994 103 AGPLVSLALGPLTNIALAVLG 123 (230)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 66778888 999999999775
No 63
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=93.39 E-value=0.14 Score=56.10 Aligned_cols=58 Identities=28% Similarity=0.422 Sum_probs=48.3
Q ss_pred ceeecccCCCChhhhCC-CCCCCEEEEECCeecCCCCCCCHHHHHHHHHc-CCCCcEEEEEEe
Q 040736 213 GVLVPEVRALSAASRDG-LFPGDVILSVNGNEFPKTGPNVVSELVNAIKK-SPKRNVLLKVAR 273 (448)
Q Consensus 213 gvvV~~V~~gSpA~~AG-L~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~-~~g~~V~l~V~R 273 (448)
-+.|..+.+.++|++.| |++||+++.|||.+|.. +|-+++++.+.. ..+..|.++|+|
T Consensus 675 pi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~G---ksH~~vv~Lm~~AArnghV~LtVRR 734 (984)
T KOG3209|consen 675 PIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEG---KSHSEVVDLMEAAARNGHVNLTVRR 734 (984)
T ss_pred eeEEeeeeecccccccCcccCCCeEEEecCeeccC---ccHHHHHHHHHHHHhcCceEEEEee
Confidence 36888999999998876 89999999999999944 677888888765 345679999988
No 64
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=93.02 E-value=0.077 Score=57.82 Aligned_cols=57 Identities=33% Similarity=0.476 Sum_probs=42.0
Q ss_pred CceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEe
Q 040736 212 PGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVAR 273 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R 273 (448)
-|+.|.+|.|+|.|+++|++.||.|++|||+...+ -+.....+.+.+ +..+++++..
T Consensus 562 fgifV~~V~pgskAa~~GlKRgDqilEVNgQnfen---is~~KA~eiLrn--nthLtltvKt 618 (1283)
T KOG3542|consen 562 FGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFEN---ISAKKAEEILRN--NTHLTLTVKT 618 (1283)
T ss_pred ceeEEeeecCCchHHHhhhhhhhhhhhccccchhh---hhHHHHHHHhcC--CceEEEEEec
Confidence 36899999999999999999999999999998722 333444455543 3446666554
No 65
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=92.97 E-value=0.17 Score=54.61 Aligned_cols=67 Identities=30% Similarity=0.403 Sum_probs=49.9
Q ss_pred eeecccCCCChhhh-CCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeCCEEEEEEEee
Q 040736 214 VLVPEVRALSAASR-DGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARGEQQFEIGVTP 284 (448)
Q Consensus 214 vvV~~V~~gSpA~~-AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~G~~~~l~v~p 284 (448)
+.|.++...+-|++ -+||.||+|++|||+-..| .+..|-.+.+.+..| ++.+.|.||.+..-+.+.+
T Consensus 221 IFvKeit~~gLAardgnlqEGDiiLkINGtvteN---mSLtDar~LIEkS~G-KL~lvVlRD~~qtLiNiP~ 288 (1027)
T KOG3580|consen 221 IFVKEITRTGLAARDGNLQEGDIILKINGTVTEN---MSLTDARKLIEKSRG-KLQLVVLRDSQQTLINIPS 288 (1027)
T ss_pred hhhhhhcccchhhccCCcccccEEEEECcEeecc---ccchhHHHHHHhccC-ceEEEEEecCCceeeecCC
Confidence 45666766676654 5799999999999997743 678888888876665 5889999987655555543
No 66
>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]
Probab=92.79 E-value=0.28 Score=44.30 Aligned_cols=55 Identities=29% Similarity=0.352 Sum_probs=41.4
Q ss_pred ceeecccCCCChhhhC-CCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEE
Q 040736 213 GVLVPEVRALSAASRD-GLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKV 271 (448)
Q Consensus 213 gvvV~~V~~gSpA~~A-GL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V 271 (448)
-++|..+.||+-|++. ||+.||.+++|||..+.. ..-+...+.++...| .+.+.|
T Consensus 116 piyisriipggvadrhgglkrgdqllsvngvsveg---e~hekavellkaa~g-svklvv 171 (207)
T KOG3550|consen 116 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG---EHHEKAVELLKAAVG-SVKLVV 171 (207)
T ss_pred ceEEEeecCCccccccCcccccceeEeecceeecc---hhhHHHHHHHHHhcC-cEEEEE
Confidence 3689999999999874 799999999999999832 445566677776544 355543
No 67
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=91.39 E-value=0.39 Score=48.01 Aligned_cols=58 Identities=26% Similarity=0.372 Sum_probs=45.5
Q ss_pred CceeecccCCCChhhhCC-CCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEe
Q 040736 212 PGVLVPEVRALSAASRDG-LFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVAR 273 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AG-L~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R 273 (448)
|-+.|.+|..++||++-| ++.||.|++|||..|.. ++-.++.+.++... .+|++++.+
T Consensus 30 PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKG---ktKveVAkmIQ~~~-~eV~IhyNK 88 (429)
T KOG3651|consen 30 PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKG---KTKVEVAKMIQVSL-NEVKIHYNK 88 (429)
T ss_pred CeEEEEEeccCCchhccCccccCCeeEEecceeecC---ccHHHHHHHHHHhc-cceEEEehh
Confidence 567899999999999876 89999999999999932 56667777777544 357777643
No 68
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=91.15 E-value=0.41 Score=52.21 Aligned_cols=68 Identities=24% Similarity=0.264 Sum_probs=47.7
Q ss_pred ceeecccCCCChhhhCC-CCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCC-CcEEEEEEeCCEEEEEEEe
Q 040736 213 GVLVPEVRALSAASRDG-LFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPK-RNVLLKVARGEQQFEIGVT 283 (448)
Q Consensus 213 gvvV~~V~~gSpA~~AG-L~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g-~~V~l~V~R~G~~~~l~v~ 283 (448)
.++|.....++||++.| |..||.|++|||...-. --....+.+++..++ ..|+++|.+=--..++.++
T Consensus 674 TVViAnmm~~GpAarsgkLnIGDQiiaING~SLVG---LPLstcQs~Ik~~KnQT~VkltiV~cpPV~~V~I~ 743 (829)
T KOG3605|consen 674 TVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVG---LPLSTCQSIIKGLKNQTAVKLNIVSCPPVTTVLIR 743 (829)
T ss_pred HHHHHhcccCChhhhcCCccccceeEeecCceecc---ccHHHHHHHHhcccccceEEEEEecCCCceEEEee
Confidence 35666778899999987 89999999999987621 345677888887544 4577777664444444443
No 69
>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]
Probab=90.00 E-value=0.39 Score=55.38 Aligned_cols=53 Identities=32% Similarity=0.360 Sum_probs=40.9
Q ss_pred eecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEE
Q 040736 215 LVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKV 271 (448)
Q Consensus 215 vV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V 271 (448)
.|..|.++|||..||+++||.|+.+||+++.. ....++.+.+.+ .|..+.+.+
T Consensus 661 ~v~sv~egsPA~~agls~~DlIthvnge~v~g---l~H~ev~~Lll~-~gn~v~~~t 713 (1205)
T KOG0606|consen 661 SVGSVEEGSPAFEAGLSAGDLITHVNGEPVHG---LVHTEVMELLLK-SGNKVTLRT 713 (1205)
T ss_pred eeeeecCCCCccccCCCccceeEeccCcccch---hhHHHHHHHHHh-cCCeeEEEe
Confidence 67889999999999999999999999999943 456777777653 334444433
No 70
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=89.79 E-value=0.66 Score=45.77 Aligned_cols=59 Identities=22% Similarity=0.427 Sum_probs=47.6
Q ss_pred CCceeecccCCCChhhhCCC-CCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEe
Q 040736 211 FPGVLVPEVRALSAASRDGL-FPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVAR 273 (448)
Q Consensus 211 ~~gvvV~~V~~gSpA~~AGL-~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R 273 (448)
.+|+.|....||+-|+..|| ...|++++|||.+|.. ++.+++.+.+-.+. ..+-+||+-
T Consensus 193 vpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaG---KTLDQVTDMMvANs-hNLIiTVkP 252 (358)
T KOG3606|consen 193 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAG---KTLDQVTDMMVANS-HNLIITVKP 252 (358)
T ss_pred cCceEEEeecCCccccccceeeecceeEEEcCEEecc---ccHHHHHHHHhhcc-cceEEEecc
Confidence 57889999999999999996 6799999999999943 78888888776433 456667754
No 71
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=88.92 E-value=0.52 Score=47.98 Aligned_cols=55 Identities=35% Similarity=0.457 Sum_probs=46.2
Q ss_pred eeecccCCCChhhhCC-CCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEE
Q 040736 214 VLVPEVRALSAASRDG-LFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVA 272 (448)
Q Consensus 214 vvV~~V~~gSpA~~AG-L~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~ 272 (448)
++|..+.++..|+..| |-.||-|++|||..|++ -.-+|+++.++ +.|+.|+++|+
T Consensus 82 vviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~---c~HeevV~iLR-NAGdeVtlTV~ 137 (505)
T KOG3549|consen 82 VVISKIYKDQAADITGQLFVGDAILQVNGIYVTA---CPHEEVVNILR-NAGDEVTLTVK 137 (505)
T ss_pred EEeehhhhhhhhhhcCceEeeeeeEEeccEEeec---CChHHHHHHHH-hcCCEEEEEeH
Confidence 6788999999999887 57999999999999954 45688888887 56788999985
No 72
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=86.96 E-value=0.086 Score=50.48 Aligned_cols=21 Identities=52% Similarity=0.634 Sum_probs=16.2
Q ss_pred HHHHhhHHHHHHHHhC--Cccce
Q 040736 100 IIVHESGHFLAAYLQG--IHVSK 120 (448)
Q Consensus 100 i~vHE~gH~~~A~~~g--v~V~~ 120 (448)
+.+||.||+++|.++. .+|.+
T Consensus 31 ~A~HEAGhAvva~~l~~~~~v~~ 53 (213)
T PF01434_consen 31 IAYHEAGHAVVAYLLPPADPVSK 53 (213)
T ss_dssp HHHHHHHHHHHHHHSSS---EEE
T ss_pred HHHHHHHHHHHHHHhcccccEEE
Confidence 5699999999999997 34554
No 73
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=85.22 E-value=0.91 Score=46.87 Aligned_cols=55 Identities=40% Similarity=0.617 Sum_probs=43.5
Q ss_pred eeecccCCCChhhhCC-CCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEE
Q 040736 214 VLVPEVRALSAASRDG-LFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVA 272 (448)
Q Consensus 214 vvV~~V~~gSpA~~AG-L~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~ 272 (448)
++|..+.+|-+|++++ |..||.|++|||....+ .+-++.+++++. .|+.|.+.|+
T Consensus 112 IlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~---AtHdeAVqaLKr-aGkeV~levK 167 (506)
T KOG3551|consen 112 ILISKIFKGLAADQTGALFLGDAILSVNGEDLRD---ATHDEAVQALKR-AGKEVLLEVK 167 (506)
T ss_pred eehhHhccccccccccceeeccEEEEecchhhhh---cchHHHHHHHHh-hCceeeeeee
Confidence 5788999999888765 89999999999999843 466777888874 5677776664
No 74
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=85.07 E-value=1.1 Score=51.11 Aligned_cols=60 Identities=30% Similarity=0.348 Sum_probs=45.3
Q ss_pred CceeecccCCCChhhhCC-CCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEEeCC
Q 040736 212 PGVLVPEVRALSAASRDG-LFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVARGE 275 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AG-L~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~R~G 275 (448)
-|++|..|.+|++|+..| |+.||.+++|||+..-. -+-++..+++. ..|..|.+.|.+.|
T Consensus 960 lGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiG---isQErAA~lmt-rtg~vV~leVaKqg 1020 (1629)
T KOG1892|consen 960 LGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIG---ISQERAARLMT-RTGNVVHLEVAKQG 1020 (1629)
T ss_pred cceEEEEeccCCccccccccccCceeeeecCccccc---ccHHHHHHHHh-ccCCeEEEehhhhh
Confidence 368999999999998766 89999999999998721 34455555554 45778899887644
No 75
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=83.45 E-value=1.7 Score=46.30 Aligned_cols=59 Identities=31% Similarity=0.439 Sum_probs=42.8
Q ss_pred CceeecccCCCChhhhCC-CCCCCEEEEECCeecCCCCCCCHHHHHHHHHc--CCCCcEEEEEEe
Q 040736 212 PGVLVPEVRALSAASRDG-LFPGDVILSVNGNEFPKTGPNVVSELVNAIKK--SPKRNVLLKVAR 273 (448)
Q Consensus 212 ~gvvV~~V~~gSpA~~AG-L~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~--~~g~~V~l~V~R 273 (448)
.|+.|.++.++++-+.-| +.+||.|++||.....+ -+-+|.++.|++ +...+++++|..
T Consensus 277 ggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFEN---mSNd~AVrvLREaV~~~gPi~ltvAk 338 (626)
T KOG3571|consen 277 GGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFEN---MSNDQAVRVLREAVSRPGPIKLTVAK 338 (626)
T ss_pred CceEEeeeccCceeeccCccCccceEEEeeecchhh---cCchHHHHHHHHHhccCCCeEEEEee
Confidence 478999999998776655 89999999999998843 344555566654 223457777765
No 76
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]
Probab=81.40 E-value=4.2 Score=45.08 Aligned_cols=70 Identities=23% Similarity=0.242 Sum_probs=56.3
Q ss_pred CCceeecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCC-cEEEEE-EeCCEEEEEEEeecc
Q 040736 211 FPGVLVPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKR-NVLLKV-ARGEQQFEIGVTPDE 286 (448)
Q Consensus 211 ~~gvvV~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~-~V~l~V-~R~G~~~~l~v~p~~ 286 (448)
..|+.++....+|||.+ +|++-.-|++|||..+ .+.+|+...+.+.+.+ -+.+.- .++|-...+++++++
T Consensus 861 p~gvyvt~rg~gspalq-~l~aa~fitavng~~t-----~~lddf~~~~~~ipdnsyv~v~~mtfd~vp~~~s~k~n~ 932 (955)
T KOG1421|consen 861 PEGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDT-----NTLDDFYHMLLEIPDNSYVQVKQMTFDGVPSIVSVKPNP 932 (955)
T ss_pred CCceEEeecccCChhHh-hcchheeEEEeccccc-----CcHHHHHHHHhhCCCCceEEEEEeccCCCceEEEeccCC
Confidence 36889999999999999 8999999999999999 8999999999876643 344433 357777777777653
No 77
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=80.52 E-value=2.3 Score=45.74 Aligned_cols=56 Identities=30% Similarity=0.430 Sum_probs=46.2
Q ss_pred ceeecccCCCChhhhCC-CCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCCCcEEEEEE
Q 040736 213 GVLVPEVRALSAASRDG-LFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPKRNVLLKVA 272 (448)
Q Consensus 213 gvvV~~V~~gSpA~~AG-L~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g~~V~l~V~ 272 (448)
.++|..+..|+.+++.| |+.||+|.+|||..+.+ .+.+++++.+.+..| .+++.+.
T Consensus 147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~---~~~~e~q~~l~~~~G-~itfkii 203 (542)
T KOG0609|consen 147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVAN---KSPEELQELLRNSRG-SITFKII 203 (542)
T ss_pred ccEEeeeccCCcchhccceeeccchheecCeeccc---CCHHHHHHHHHhCCC-cEEEEEc
Confidence 46888899999998888 59999999999999943 678999999987664 5777764
No 78
>CHL00176 ftsH cell division protein; Validated
Probab=74.27 E-value=1.4 Score=49.13 Aligned_cols=22 Identities=36% Similarity=0.385 Sum_probs=17.1
Q ss_pred HHHHhhHHHHHHHHhC--CccceE
Q 040736 100 IIVHESGHFLAAYLQG--IHVSKF 121 (448)
Q Consensus 100 i~vHE~gH~~~A~~~g--v~V~~f 121 (448)
+..||.||+++|..+. .+|++.
T Consensus 441 vA~hEaGhA~v~~~l~~~~~v~kv 464 (638)
T CHL00176 441 IAYHEVGHAIVGTLLPNHDPVQKV 464 (638)
T ss_pred HHHHhhhhHHHHhhccCCCceEEE
Confidence 4599999999999875 456663
No 79
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=72.73 E-value=1.7 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=18.6
Q ss_pred HHHHhhHHHHHHHHh--CCccceEee
Q 040736 100 IIVHESGHFLAAYLQ--GIHVSKFAV 123 (448)
Q Consensus 100 i~vHE~gH~~~A~~~--gv~V~~fsi 123 (448)
+..||.||+++|..+ +.++++.++
T Consensus 314 ~A~hEaGhAlv~~~l~~~~~v~~vsi 339 (495)
T TIGR01241 314 VAYHEAGHALVGLLLKDADPVHKVTI 339 (495)
T ss_pred HHHHHHhHHHHHHhcCCCCceEEEEE
Confidence 458999999999998 456666444
No 80
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=66.66 E-value=6.1 Score=37.12 Aligned_cols=31 Identities=29% Similarity=0.115 Sum_probs=27.1
Q ss_pred CCCceeecccCCCChhhhCCCCCCCEEEEEC
Q 040736 210 AFPGVLVPEVRALSAASRDGLFPGDVILSVN 240 (448)
Q Consensus 210 ~~~gvvV~~V~~gSpA~~AGL~~GDvIlsIn 240 (448)
....+.|.+|..||||+++|+..|++|+++.
T Consensus 120 e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 120 EGGKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred eCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 3456789999999999999999999998874
No 81
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=62.74 E-value=3.7 Score=45.88 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=16.7
Q ss_pred HHHHhhHHHHHHHHhC--Cccce
Q 040736 100 IIVHESGHFLAAYLQG--IHVSK 120 (448)
Q Consensus 100 i~vHE~gH~~~A~~~g--v~V~~ 120 (448)
+..||.||+++|.++. .+|++
T Consensus 411 ~a~he~gha~~~~~~~~~~~~~~ 433 (644)
T PRK10733 411 TAYHEAGHAIIGRLVPEHDPVHK 433 (644)
T ss_pred HHHHHHHHHHHHHHccCCCceeE
Confidence 4589999999999885 45655
No 82
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=62.58 E-value=3.9 Score=36.21 Aligned_cols=11 Identities=45% Similarity=0.779 Sum_probs=9.2
Q ss_pred HHHHHhhHHHH
Q 040736 99 IIIVHESGHFL 109 (448)
Q Consensus 99 ~i~vHE~gH~~ 109 (448)
.+++||+||++
T Consensus 107 ~v~~HEiGHaL 117 (154)
T PF00413_consen 107 SVAIHEIGHAL 117 (154)
T ss_dssp HHHHHHHHHHT
T ss_pred hhhhhcccccc
Confidence 47799999974
No 83
>PF11667 DUF3267: Protein of unknown function (DUF3267); InterPro: IPR021683 This family of proteins has no known function.
Probab=62.05 E-value=6.8 Score=33.29 Aligned_cols=20 Identities=35% Similarity=0.198 Sum_probs=17.6
Q ss_pred HHHHHhhHHHHHHHHhCCcc
Q 040736 99 IIIVHESGHFLAAYLQGIHV 118 (448)
Q Consensus 99 ~i~vHE~gH~~~A~~~gv~V 118 (448)
.+.+||+-|++..+.+|.+.
T Consensus 6 ~~~~HEliH~l~~~~~~~~~ 25 (111)
T PF11667_consen 6 LIPLHELIHGLFFKLFGKKP 25 (111)
T ss_pred eHHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999855
No 84
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=56.69 E-value=5.6 Score=35.73 Aligned_cols=14 Identities=43% Similarity=0.700 Sum_probs=10.7
Q ss_pred HHHHHhhHHHHHHH
Q 040736 99 IIIVHESGHFLAAY 112 (448)
Q Consensus 99 ~i~vHE~gH~~~A~ 112 (448)
.+++||+||.+=-+
T Consensus 106 ~~~~HEiGHaLGL~ 119 (156)
T cd04279 106 AIALHELGHALGLW 119 (156)
T ss_pred HHHHHHhhhhhcCC
Confidence 57899999986433
No 85
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=52.94 E-value=7.3 Score=34.92 Aligned_cols=13 Identities=38% Similarity=0.355 Sum_probs=10.4
Q ss_pred HHHHHHHhhHHHH
Q 040736 97 TAIIIVHESGHFL 109 (448)
Q Consensus 97 ~~~i~vHE~gH~~ 109 (448)
...+++||+||.+
T Consensus 94 ~~~~~~HEiGHaL 106 (165)
T cd04268 94 LRNTAEHELGHAL 106 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 3467899999984
No 86
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=52.78 E-value=5.2 Score=35.98 Aligned_cols=11 Identities=45% Similarity=0.688 Sum_probs=9.2
Q ss_pred HHHHHhhHHHH
Q 040736 99 IIIVHESGHFL 109 (448)
Q Consensus 99 ~i~vHE~gH~~ 109 (448)
.+++||+||++
T Consensus 109 ~~~~HEiGHaL 119 (157)
T cd04278 109 SVAAHEIGHAL 119 (157)
T ss_pred HHHHHHhcccc
Confidence 47799999983
No 87
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=48.60 E-value=8.6 Score=34.98 Aligned_cols=11 Identities=45% Similarity=0.875 Sum_probs=9.3
Q ss_pred HHHHHhhHHHH
Q 040736 99 IIIVHESGHFL 109 (448)
Q Consensus 99 ~i~vHE~gH~~ 109 (448)
-+++||+||++
T Consensus 71 ~TltHEvGH~L 81 (154)
T PF05572_consen 71 KTLTHEVGHWL 81 (154)
T ss_dssp HHHHHHHHHHT
T ss_pred cchhhhhhhhh
Confidence 47899999984
No 88
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=46.69 E-value=11 Score=34.96 Aligned_cols=13 Identities=46% Similarity=0.600 Sum_probs=10.5
Q ss_pred HHHHHHHhhHHHH
Q 040736 97 TAIIIVHESGHFL 109 (448)
Q Consensus 97 ~~~i~vHE~gH~~ 109 (448)
...+++||+||.+
T Consensus 113 ~~~t~~HEiGHaL 125 (186)
T cd04277 113 GYQTIIHEIGHAL 125 (186)
T ss_pred hHHHHHHHHHHHh
Confidence 3467899999985
No 89
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=46.04 E-value=10 Score=33.17 Aligned_cols=10 Identities=50% Similarity=0.806 Sum_probs=9.3
Q ss_pred HHHHhhHHHH
Q 040736 100 IIVHESGHFL 109 (448)
Q Consensus 100 i~vHE~gH~~ 109 (448)
+++||+||++
T Consensus 89 ~~~HEigHaL 98 (140)
T smart00235 89 VAAHELGHAL 98 (140)
T ss_pred cHHHHHHHHh
Confidence 7899999997
No 90
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=45.13 E-value=17 Score=30.31 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.7
Q ss_pred HHHHHhhHHHHHHHHhC
Q 040736 99 IIIVHESGHFLAAYLQG 115 (448)
Q Consensus 99 ~i~vHE~gH~~~A~~~g 115 (448)
-++.||++|.|.....+
T Consensus 27 ~~l~HE~~H~~~~~~~~ 43 (128)
T PF13485_consen 27 RVLAHELAHQWFGNYFG 43 (128)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 57799999999998866
No 91
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=44.94 E-value=12 Score=35.24 Aligned_cols=11 Identities=45% Similarity=0.809 Sum_probs=9.3
Q ss_pred HHHHHhhHHHH
Q 040736 99 IIIVHESGHFL 109 (448)
Q Consensus 99 ~i~vHE~gH~~ 109 (448)
.+++||+||++
T Consensus 94 ~~i~HElgHaL 104 (198)
T cd04327 94 RVVLHEFGHAL 104 (198)
T ss_pred HHHHHHHHHHh
Confidence 47799999985
No 92
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=43.89 E-value=19 Score=34.90 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=12.8
Q ss_pred HHHHHHHhhHHHHHHH
Q 040736 97 TAIIIVHESGHFLAAY 112 (448)
Q Consensus 97 ~~~i~vHE~gH~~~A~ 112 (448)
..-++.||+||+++..
T Consensus 92 ~~~~l~HE~GHAlI~~ 107 (220)
T PF14247_consen 92 VLFTLYHELGHALIDD 107 (220)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3347899999999874
No 93
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=41.54 E-value=22 Score=39.37 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=34.1
Q ss_pred ecccCCCChhhhCCCCCCCEEEEECCeecCCCCCCCHHHHHHHHHcCCC
Q 040736 216 VPEVRALSAASRDGLFPGDVILSVNGNEFPKTGPNVVSELVNAIKKSPK 264 (448)
Q Consensus 216 V~~V~~gSpA~~AGL~~GDvIlsInG~~V~~~~~~s~~dl~~~L~~~~g 264 (448)
|-+...|+-|++-|++.|-+|++|||+.|-. .--+.+++.|...-|
T Consensus 760 ICSLlRGGIAERGGVRVGHRIIEINgQSVVA---~pHekIV~lLs~aVG 805 (829)
T KOG3605|consen 760 ICSLLRGGIAERGGVRVGHRIIEINGQSVVA---TPHEKIVQLLSNAVG 805 (829)
T ss_pred eehhhcccchhccCceeeeeEEEECCceEEe---ccHHHHHHHHHHhhh
Confidence 4456678999999999999999999998832 223556666665433
No 94
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=41.37 E-value=9.8 Score=42.05 Aligned_cols=32 Identities=38% Similarity=0.549 Sum_probs=25.8
Q ss_pred HHhhHHHHHHHHhCC--ccceEeeeccceeeeeccCceeEEEeEEecc---ceeecC
Q 040736 102 VHESGHFLAAYLQGI--HVSKFAVGFGPILAKFSANNVEYSLRAFPLG---GFVGFP 153 (448)
Q Consensus 102 vHE~gH~~~A~~~gv--~V~~fsiGfGp~l~~~~~~~t~y~i~~~plG---g~v~~~ 153 (448)
-||.||.++|..+.- +|++ +.++|=| ||....
T Consensus 411 YhEaghalv~~~l~~~d~v~K--------------------vtIiPrG~alG~t~~~ 447 (596)
T COG0465 411 YHEAGHALVGLLLPDADPVHK--------------------VTIIPRGRALGYTLFL 447 (596)
T ss_pred HHHHHHHHHHHhCCCCcccce--------------------eeeccCchhhcchhcC
Confidence 899999999999876 5776 7788888 666543
No 95
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=41.22 E-value=11 Score=37.36 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=10.9
Q ss_pred HHHHHHHhhHHHHHH
Q 040736 97 TAIIIVHESGHFLAA 111 (448)
Q Consensus 97 ~~~i~vHE~gH~~~A 111 (448)
.--+++||+||.++.
T Consensus 216 ~~~v~vHE~GHsf~~ 230 (264)
T PF09471_consen 216 FKQVVVHEFGHSFGG 230 (264)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred ccceeeeeccccccc
Confidence 345789999997643
No 96
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=38.44 E-value=20 Score=29.49 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=11.8
Q ss_pred HHHHhhHHHHHHHHhC
Q 040736 100 IIVHESGHFLAAYLQG 115 (448)
Q Consensus 100 i~vHE~gH~~~A~~~g 115 (448)
++.||+||++.-....
T Consensus 45 ~laHELgH~~~~~~~~ 60 (122)
T PF06114_consen 45 TLAHELGHILLHHGDE 60 (122)
T ss_dssp HHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHhhhccc
Confidence 5689999998765543
No 97
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=38.42 E-value=33 Score=37.85 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=27.1
Q ss_pred eeecccCCCChhhhC-CCCCCCEEEEECCeec
Q 040736 214 VLVPEVRALSAASRD-GLFPGDVILSVNGNEF 244 (448)
Q Consensus 214 vvV~~V~~gSpA~~A-GL~~GDvIlsInG~~V 244 (448)
.+|.++.++|||... -|.+||.+++||++.+
T Consensus 227 h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtv 258 (638)
T KOG1738|consen 227 HVTSKIFEQSPADYRQKILDGDEVLQINEQTV 258 (638)
T ss_pred eeccccccCChHHHhhcccCccceeeeccccc
Confidence 367889999999764 4899999999999998
No 98
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=36.67 E-value=17 Score=30.86 Aligned_cols=12 Identities=42% Similarity=0.515 Sum_probs=9.8
Q ss_pred HHHHHhhHHHHH
Q 040736 99 IIIVHESGHFLA 110 (448)
Q Consensus 99 ~i~vHE~gH~~~ 110 (448)
.++.||+||-+=
T Consensus 109 ~~~~HEiGH~lG 120 (124)
T PF13582_consen 109 DTFAHEIGHNLG 120 (124)
T ss_dssp THHHHHHHHHTT
T ss_pred eEeeehhhHhcC
Confidence 578999999753
No 99
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=36.00 E-value=20 Score=34.46 Aligned_cols=15 Identities=33% Similarity=0.326 Sum_probs=11.2
Q ss_pred HHHHhhHHHHHHHHh
Q 040736 100 IIVHESGHFLAAYLQ 114 (448)
Q Consensus 100 i~vHE~gH~~~A~~~ 114 (448)
++.||+||++.=+..
T Consensus 75 tlAHELGH~llH~~~ 89 (213)
T COG2856 75 TLAHELGHALLHTDL 89 (213)
T ss_pred HHHHHHhHHHhcccc
Confidence 458999999875443
No 100
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=35.80 E-value=19 Score=32.16 Aligned_cols=15 Identities=47% Similarity=0.510 Sum_probs=11.2
Q ss_pred HHHHHHHhhHHHHHH
Q 040736 97 TAIIIVHESGHFLAA 111 (448)
Q Consensus 97 ~~~i~vHE~gH~~~A 111 (448)
...++.||+||.+=.
T Consensus 96 ~~~~~~HElGH~LGl 110 (167)
T cd00203 96 GAQTIAHELGHALGF 110 (167)
T ss_pred chhhHHHHHHHHhCC
Confidence 445779999998643
No 101
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=34.40 E-value=29 Score=33.29 Aligned_cols=15 Identities=40% Similarity=0.399 Sum_probs=12.4
Q ss_pred HHHHHHHHhhHHHHH
Q 040736 96 LTAIIIVHESGHFLA 110 (448)
Q Consensus 96 l~~~i~vHE~gH~~~ 110 (448)
+...++.||++|+|.
T Consensus 92 l~gsiLAHE~mHa~L 106 (212)
T PF12315_consen 92 LTGSILAHELMHAWL 106 (212)
T ss_pred HHhhHHHHHHHHHHh
Confidence 344688999999998
No 102
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=34.33 E-value=19 Score=34.61 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=10.5
Q ss_pred HHHHHhhHHHHHHH
Q 040736 99 IIIVHESGHFLAAY 112 (448)
Q Consensus 99 ~i~vHE~gH~~~A~ 112 (448)
-++.||+||.+==|
T Consensus 135 hvi~HEiGH~IGfR 148 (211)
T PF12388_consen 135 HVITHEIGHCIGFR 148 (211)
T ss_pred HHHHHHhhhhcccc
Confidence 37899999985433
No 103
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=30.63 E-value=29 Score=32.10 Aligned_cols=20 Identities=45% Similarity=0.493 Sum_probs=12.3
Q ss_pred HHHHHHHHhhHHHHHHHHhC
Q 040736 96 LTAIIIVHESGHFLAAYLQG 115 (448)
Q Consensus 96 l~~~i~vHE~gH~~~A~~~g 115 (448)
....++.||+||-+=|..-+
T Consensus 141 ~~~~~~AHEiGH~lGa~HD~ 160 (196)
T PF13688_consen 141 NGAITFAHEIGHNLGAPHDG 160 (196)
T ss_dssp HHHHHHHHHHHHHTT-----
T ss_pred ceehhhHHhHHHhcCCCCCC
Confidence 35567899999998877644
No 104
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=29.50 E-value=33 Score=31.55 Aligned_cols=20 Identities=30% Similarity=0.104 Sum_probs=13.8
Q ss_pred HHHHHHHhhHHHHHHHHhCC
Q 040736 97 TAIIIVHESGHFLAAYLQGI 116 (448)
Q Consensus 97 ~~~i~vHE~gH~~~A~~~gv 116 (448)
.+-++.||+||-+=|..-+-
T Consensus 111 ~~~~~aHElGH~lGa~Hd~~ 130 (173)
T PF13574_consen 111 GIDTFAHELGHQLGAPHDFD 130 (173)
T ss_dssp HHHHHHHHHHHHHT---SSS
T ss_pred eeeeehhhhHhhcCCCCCCC
Confidence 55678999999998876664
No 105
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=28.96 E-value=34 Score=30.36 Aligned_cols=10 Identities=60% Similarity=0.946 Sum_probs=8.4
Q ss_pred HHHHhhHHHH
Q 040736 100 IIVHESGHFL 109 (448)
Q Consensus 100 i~vHE~gH~~ 109 (448)
|..||+||.+
T Consensus 80 IaaHE~GHiL 89 (132)
T PF02031_consen 80 IAAHELGHIL 89 (132)
T ss_dssp HHHHHHHHHH
T ss_pred eeeehhcccc
Confidence 6799999974
No 106
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=27.54 E-value=31 Score=31.99 Aligned_cols=12 Identities=50% Similarity=0.357 Sum_probs=9.7
Q ss_pred HHHHHHhhHHHH
Q 040736 98 AIIIVHESGHFL 109 (448)
Q Consensus 98 ~~i~vHE~gH~~ 109 (448)
..+++||+||++
T Consensus 75 ~g~v~HE~~Hal 86 (180)
T cd04280 75 LGTIVHELMHAL 86 (180)
T ss_pred CchhHHHHHHHh
Confidence 357799999984
No 107
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=27.11 E-value=35 Score=35.48 Aligned_cols=17 Identities=35% Similarity=0.692 Sum_probs=12.1
Q ss_pred HHHHHHHhhHHHHHHHH
Q 040736 97 TAIIIVHESGHFLAAYL 113 (448)
Q Consensus 97 ~~~i~vHE~gH~~~A~~ 113 (448)
.+..++||+||++=...
T Consensus 222 ~v~tl~HE~GHa~h~~~ 238 (427)
T cd06459 222 DVFTLAHELGHAFHSYL 238 (427)
T ss_pred hHHHHHHHhhHHHHHHH
Confidence 45568999999864443
No 108
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=26.40 E-value=38 Score=34.67 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=13.0
Q ss_pred HHHHHHHhhHHHHHHHHh
Q 040736 97 TAIIIVHESGHFLAAYLQ 114 (448)
Q Consensus 97 ~~~i~vHE~gH~~~A~~~ 114 (448)
.+..++||+||++=....
T Consensus 154 ~v~tl~HE~GHa~h~~l~ 171 (365)
T cd06258 154 DINTLFHEFGHAVHFLLI 171 (365)
T ss_pred HHHHHHHHHhHHHHHHHh
Confidence 445689999999755443
No 109
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=25.98 E-value=35 Score=32.43 Aligned_cols=18 Identities=28% Similarity=0.139 Sum_probs=13.6
Q ss_pred HHHHHhhHHHHHHHHhCC
Q 040736 99 IIIVHESGHFLAAYLQGI 116 (448)
Q Consensus 99 ~i~vHE~gH~~~A~~~gv 116 (448)
-++.||+||.+=|+.-+-
T Consensus 139 ~~~aHEiGH~lGl~H~~~ 156 (206)
T PF13583_consen 139 QTFAHEIGHNLGLRHDFD 156 (206)
T ss_pred hHHHHHHHHHhcCCCCcc
Confidence 457899999987765543
No 110
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=25.55 E-value=42 Score=35.57 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=17.1
Q ss_pred HHHHHHHhhHHHHHHHHhCCccc
Q 040736 97 TAIIIVHESGHFLAAYLQGIHVS 119 (448)
Q Consensus 97 ~~~i~vHE~gH~~~A~~~gv~V~ 119 (448)
.+..+.||+||++=..+-..+-.
T Consensus 242 ~v~tLfHE~GHa~H~~ls~~~~~ 264 (458)
T PF01432_consen 242 DVETLFHEFGHAMHSLLSRTKYQ 264 (458)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSG
T ss_pred hHHHHHHHHhHHHHHHHhccccc
Confidence 45677999999988777665543
No 111
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=25.34 E-value=38 Score=31.71 Aligned_cols=12 Identities=50% Similarity=0.371 Sum_probs=9.7
Q ss_pred HHHHHhhHHHHH
Q 040736 99 IIIVHESGHFLA 110 (448)
Q Consensus 99 ~i~vHE~gH~~~ 110 (448)
-+++||++|++-
T Consensus 79 G~i~HEl~HaLG 90 (182)
T cd04283 79 GIIQHELLHALG 90 (182)
T ss_pred chHHHHHHHHhC
Confidence 377999999863
No 112
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=24.65 E-value=47 Score=33.90 Aligned_cols=29 Identities=34% Similarity=0.533 Sum_probs=26.1
Q ss_pred ecccCCCChhhhCCCCCCCEEEEECCeec
Q 040736 216 VPEVRALSAASRDGLFPGDVILSVNGNEF 244 (448)
Q Consensus 216 V~~V~~gSpA~~AGL~~GDvIlsInG~~V 244 (448)
+..|.+.+||+++|.-.||.|+-+|+.++
T Consensus 67 ~lrv~~~~~~e~~~~~~~dyilg~n~Dp~ 95 (417)
T COG5233 67 VLRVNPESPAEKAGMVVGDYILGINEDPL 95 (417)
T ss_pred heeccccChhHhhccccceeEEeecCCcH
Confidence 55678999999999999999999999776
No 113
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=24.43 E-value=45 Score=29.75 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=13.4
Q ss_pred HHHHHHhhHHHHHHHH
Q 040736 98 AIIIVHESGHFLAAYL 113 (448)
Q Consensus 98 ~~i~vHE~gH~~~A~~ 113 (448)
.-+++||+.|+++-..
T Consensus 60 ~~~l~HEm~H~~~~~~ 75 (146)
T smart00731 60 RETLLHELCHAALYLF 75 (146)
T ss_pred HhhHHHHHHHHHHHHh
Confidence 3488999999998875
No 114
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=24.07 E-value=45 Score=29.64 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=13.7
Q ss_pred HHHHHHHhhHHHHHHHHh
Q 040736 97 TAIIIVHESGHFLAAYLQ 114 (448)
Q Consensus 97 ~~~i~vHE~gH~~~A~~~ 114 (448)
..-+++||+.|+++-...
T Consensus 60 ~~~tL~HEm~H~~~~~~~ 77 (157)
T PF10263_consen 60 LIDTLLHEMAHAAAYVFG 77 (157)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 345789999999886553
No 115
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=23.57 E-value=45 Score=36.49 Aligned_cols=13 Identities=31% Similarity=0.623 Sum_probs=10.6
Q ss_pred HHHHHHHhhHHHH
Q 040736 97 TAIIIVHESGHFL 109 (448)
Q Consensus 97 ~~~i~vHE~gH~~ 109 (448)
.+.++.||+||++
T Consensus 337 dv~TL~HElGHa~ 349 (549)
T TIGR02289 337 DIDVLTHEAGHAF 349 (549)
T ss_pred HHHHHHHHhhHHH
Confidence 4556899999996
No 116
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=23.06 E-value=48 Score=35.51 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=12.2
Q ss_pred HHHHHHHhhHHHHHHHH
Q 040736 97 TAIIIVHESGHFLAAYL 113 (448)
Q Consensus 97 ~~~i~vHE~gH~~~A~~ 113 (448)
.+..+.|||||++=..+
T Consensus 263 ~V~TLfHEfGHalH~~l 279 (472)
T cd06455 263 EVETFFHEFGHVIHHLL 279 (472)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34567999999975433
No 117
>PF14891 Peptidase_M91: Effector protein
Probab=22.77 E-value=54 Score=30.17 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=14.7
Q ss_pred HHHHHHHhhHHHHHHHHhCC
Q 040736 97 TAIIIVHESGHFLAAYLQGI 116 (448)
Q Consensus 97 ~~~i~vHE~gH~~~A~~~gv 116 (448)
.++++-||++|++=...-..
T Consensus 103 p~v~L~HEL~HA~~~~~Gt~ 122 (174)
T PF14891_consen 103 PFVVLYHELIHAYDYMNGTM 122 (174)
T ss_pred HHHHHHHHHHHHHHHHCCCC
Confidence 45678999999987654443
No 118
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=22.64 E-value=47 Score=36.61 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=11.5
Q ss_pred HHHHHHHHhhHHHHH
Q 040736 96 LTAIIIVHESGHFLA 110 (448)
Q Consensus 96 l~~~i~vHE~gH~~~ 110 (448)
-.+..++||+||++=
T Consensus 374 ~~v~TL~HE~GHa~H 388 (587)
T TIGR02290 374 RDVSTLAHELGHAYH 388 (587)
T ss_pred hhHHHHHHHhhHHHH
Confidence 345678999999973
No 119
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=21.41 E-value=54 Score=30.68 Aligned_cols=11 Identities=55% Similarity=0.682 Sum_probs=9.2
Q ss_pred HHHHHhhHHHH
Q 040736 99 IIIVHESGHFL 109 (448)
Q Consensus 99 ~i~vHE~gH~~ 109 (448)
-+++||++|++
T Consensus 81 ~~i~HEl~HaL 91 (191)
T PF01400_consen 81 GTILHELGHAL 91 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 36799999986
No 120
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=21.26 E-value=56 Score=34.60 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=15.1
Q ss_pred HHHHHHHhhHHHHHHHHhCCccc
Q 040736 97 TAIIIVHESGHFLAAYLQGIHVS 119 (448)
Q Consensus 97 ~~~i~vHE~gH~~~A~~~gv~V~ 119 (448)
-+..+.||+||++=..+...+-.
T Consensus 208 ~v~tLfHEfGHalH~~ls~~~~~ 230 (422)
T cd06456 208 EVTTLFHEFGHALHHLLTDVEYP 230 (422)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcc
Confidence 44567999999975554444333
No 121
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=21.08 E-value=51 Score=31.35 Aligned_cols=11 Identities=55% Similarity=0.878 Sum_probs=9.3
Q ss_pred HHHHHhhHHHH
Q 040736 99 IIIVHESGHFL 109 (448)
Q Consensus 99 ~i~vHE~gH~~ 109 (448)
-+++||++|++
T Consensus 89 Gti~HEl~HaL 99 (200)
T cd04281 89 GIVVHELGHVI 99 (200)
T ss_pred chHHHHHHHHh
Confidence 37899999986
No 122
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=20.53 E-value=63 Score=29.29 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=11.0
Q ss_pred HHHHHHhhHHHHHH
Q 040736 98 AIIIVHESGHFLAA 111 (448)
Q Consensus 98 ~~i~vHE~gH~~~A 111 (448)
+=|+-||++|.+..
T Consensus 136 lDVvaHEltHGVte 149 (150)
T PF01447_consen 136 LDVVAHELTHGVTE 149 (150)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cceeeecccccccc
Confidence 34789999999863
No 123
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=20.18 E-value=54 Score=36.06 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=10.9
Q ss_pred HHHHHHHhhHHHHH
Q 040736 97 TAIIIVHESGHFLA 110 (448)
Q Consensus 97 ~~~i~vHE~gH~~~ 110 (448)
.+..+.||+||++=
T Consensus 378 dv~TLaHElGHa~H 391 (591)
T TIGR00181 378 SVFTLAHELGHSMH 391 (591)
T ss_pred hHHHHHHHhhhHHH
Confidence 45678999999953
No 124
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=20.03 E-value=61 Score=34.65 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=14.5
Q ss_pred HHHHHHHhhHHHHHHHHhCCc
Q 040736 97 TAIIIVHESGHFLAAYLQGIH 117 (448)
Q Consensus 97 ~~~i~vHE~gH~~~A~~~gv~ 117 (448)
-+..+.|||||++=..+-..+
T Consensus 248 ~v~TLfHEfGHalH~~ls~~~ 268 (458)
T cd06457 248 EVETLFHEMGHAMHSMLGRTE 268 (458)
T ss_pred HHHHHHHHHhHHHHHHHcCCC
Confidence 345679999999765555444
Done!