BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040737
(662 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AEU|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEU|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 259 WEWQNNEFISQMRGAFTHKKDISGCLYGPAGKYYKEFDFSQVVNCEKKPIIS 310
W ++ + MR A T KD+ L+GP G Y + F+ + +P +S
Sbjct: 6 WTYEGPPHVGAMRVA-TAMKDLQLVLHGPQGATYADLLFTMIERRNARPPVS 56
>pdb|3AEK|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEK|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEQ|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEQ|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AER|B Chain B, Structure Of The Light-independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AER|D Chain D, Structure Of The Light-independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 259 WEWQNNEFISQMRGAFTHKKDISGCLYGPAGKYYKEFDFSQVVNCEKKPIIS 310
W ++ + MR A T KD+ L+GP G Y + F+ + +P +S
Sbjct: 6 WTYEGPPHVGAMRVA-TAMKDLQLVLHGPQGDTYADLLFTMIERRNARPPVS 56
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 510 DYKDGWTARVTLFNWDTLPFEDWFLAVKMDKAFDGYENVYSFNGTRLPNK-----ENKTL 564
DY G+ + FNW+TL +D+ YENV N + + KTL
Sbjct: 69 DY--GFDTTINKFNWETLIASR---TAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTL 123
Query: 565 FFQGLEGLNYLVGLTNGTRPGEPQVPGKQQSVIS 598
G + + G RP P +PG + + S
Sbjct: 124 EVNGETITADHILIATGGRPSHPDIPGVEYGIDS 157
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 514 GWTARVTLFNWDTLPFEDWFLAVKMDKAFDGYENVYSFNGTRLPNK-----ENKTLFFQG 568
G+ + FNW+TL +D+ YENV N + + KTL G
Sbjct: 71 GFDTTINKFNWETLIASR---TAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNG 127
Query: 569 LEGLNYLVGLTNGTRPGEPQVPGKQQSVIS 598
+ + G RP P +PG + + S
Sbjct: 128 ETITADHILIATGGRPSHPDIPGVEYGIDS 157
>pdb|3D7N|A Chain A, The Crystal Structure Of The Flavodoxin, Wrba-Like Protein
From Agrobacterium Tumefaciens
Length = 193
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 523 NWDTLPFED-----WFLAVKMDKAFDGYENVYSFNGTRL 556
+W F D WF A DK F G+ N S NG +L
Sbjct: 70 SWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKL 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,545,846
Number of Sequences: 62578
Number of extensions: 975651
Number of successful extensions: 1769
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1768
Number of HSP's gapped (non-prelim): 8
length of query: 662
length of database: 14,973,337
effective HSP length: 105
effective length of query: 557
effective length of database: 8,402,647
effective search space: 4680274379
effective search space used: 4680274379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)