BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040739
         (594 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A9AFF8|MIAB_BURM1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           OS=Burkholderia multivorans (strain ATCC 17616 / 249)
           GN=miaB PE=3 SV=1
          Length = 457

 Score = 33.9 bits (76), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 80/197 (40%), Gaps = 25/197 (12%)

Query: 173 DVDVVEFSYFGAPEPTPKEQLYTQI--VDDLRGGDPS--IGSGSQVASQETYGTLGA--- 225
           D D++ F+     E   +E++++ +  V +L+   P   IG G  VASQE    +     
Sbjct: 40  DADIILFNTCSVREKA-QEKVFSDLGRVRELKEAKPDLLIGVGGCVASQEGASIVSRAPY 98

Query: 226 ---IVKSQTGSRQVGFLTNRHVA----VDLDYPNQKMFHPLPPTL--GPGVYLGAVERAT 276
              +   QT  R    +  R  +    VD+ +P  + F  LPP    GP  ++  +E  +
Sbjct: 99  VDLVFGPQTLHRLPQMIDARRTSGRAQVDITFPEIEKFDHLPPARVEGPTAFVSIMEGCS 158

Query: 277 SFHHRRPLTFVRADGAFIPFADDFDMSTVTTSVKGLGEIGDVKIVDLQSPISSLIGKQVV 336
            +     + + R D    P  D      V T V GL + G  ++  L   +++  G   +
Sbjct: 159 KYCSYCVVPYTRGDEVSRPLDD------VLTEVAGLADQGVREVTLLGQNVNAYRG--AL 210

Query: 337 KVGRSSGLTTGTVLAYA 353
             G S      T++ Y 
Sbjct: 211 TAGSSEVADFATLIEYV 227


>sp|Q8U053|Y1764_PYRFU UPF0173 metal-dependent hydrolase PF1764 OS=Pyrococcus furiosus
           (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
           GN=PF1764 PE=3 SV=1
          Length = 225

 Score = 33.1 bits (74), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 71  AAEERANYFANLQKGVLPETLGQLPKGQQATTLLELMTIRAFHSKILRCYSLGTAIGFRI 130
           A  + ANY A   KGV  ET+G +  G      +E++ + A+HS     YS+G A G+ +
Sbjct: 71  AMYDLANYIAEKYKGV--ETIG-MNYGPTKVDEVEIVQVPAWHSSSDGKYSIGNACGYIV 127

Query: 131 KRGVLTDIPA--ILVFVSRKVHKQWLSPIQC 159
           K   +T   A    VF   ++  +   PI  
Sbjct: 128 KLDGVTIYHAGDTYVFKDMELFAELYGPIDV 158


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233,929,249
Number of Sequences: 539616
Number of extensions: 10728036
Number of successful extensions: 22220
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 22220
Number of HSP's gapped (non-prelim): 9
length of query: 594
length of database: 191,569,459
effective HSP length: 123
effective length of query: 471
effective length of database: 125,196,691
effective search space: 58967641461
effective search space used: 58967641461
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)