BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040741
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 504 bits (1298), Expect = e-143, Method: Compositional matrix adjust.
Identities = 234/402 (58%), Positives = 316/402 (78%), Gaps = 3/402 (0%)
Query: 58 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIG 115
P+YLD ATTPVDPRV + M+ F +GNP SR+H FGW++E AV+ AR+QIADL+G
Sbjct: 4 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG 63
Query: 116 ASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITY 175
A P+EI+FTSGATES+N++IKG +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TY
Sbjct: 64 ADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 123
Query: 176 LPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235
L +GI++L EL AA+R DT L+S+M VNNEIGV+Q + IG++C+ I +H DA Q
Sbjct: 124 LAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQ 183
Query: 236 ALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT 295
++GK+P+D+ + V LMS SGHKIYGPKG+GALY+RR+PR+R+E ++GGG ERG+RSGT
Sbjct: 184 SVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGT 243
Query: 296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN 355
LP IVG G A IAK+EM + +R+ L +RL NGIK+ ++ V +NG +E LN
Sbjct: 244 LPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILN 302
Query: 356 LSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT 415
+SF YVEGESL+M LK++AVSSGSACTSASLEPSYVLRALG+++++AH+SIRF +GRFTT
Sbjct: 303 VSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT 362
Query: 416 EAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
E E+D IEL K + +LR++SPL+EM K+G+D+ I+WA H
Sbjct: 363 EEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 404
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 504 bits (1298), Expect = e-143, Method: Compositional matrix adjust.
Identities = 234/402 (58%), Positives = 316/402 (78%), Gaps = 3/402 (0%)
Query: 58 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIG 115
P+YLD ATTPVDPRV + M+ F +GNP SR+H FGW++E AV+ AR+QIADL+G
Sbjct: 23 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG 82
Query: 116 ASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITY 175
A P+EI+FTSGATES+N++IKG +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TY
Sbjct: 83 ADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 142
Query: 176 LPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235
L +GI++L EL AA+R DT L+S+M VNNEIGV+Q + IG++C+ I +H DA Q
Sbjct: 143 LAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQ 202
Query: 236 ALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT 295
++GK+P+D+ + V LMS SGHKIYGPKG+GALY+RR+PR+R+E ++GGG ERG+RSGT
Sbjct: 203 SVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGT 262
Query: 296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN 355
LP IVG G A IAK+EM + +R+ L +RL NGIK+ ++ V +NG +E LN
Sbjct: 263 LPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILN 321
Query: 356 LSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT 415
+SF YVEGESL+M LK++AVSSGSACTSASLEPSYVLRALG+++++AH+SIRF +GRFTT
Sbjct: 322 VSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT 381
Query: 416 EAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
E E+D IEL K + +LR++SPL+EM K+G+D+ I+WA H
Sbjct: 382 EEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 423
>pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4HVK|A Chain A, Crystal Structure And Functional Studies Of An Unusual
L-Cysteine Desulfurase From Archaeoglobus Fulgidus
Length = 382
Score = 304 bits (778), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 159/383 (41%), Positives = 249/383 (65%), Gaps = 7/383 (1%)
Query: 60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK 119
Y D + PVD R+L+AMLP+ +GNP S H +G+++ AV+ AR ++A L+
Sbjct: 3 YFDYTSAKPVDERILEAMLPYMTESFGNP-SSVHSYGFKAREAVQEAREKVAKLVNGGGG 61
Query: 120 EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG 179
++FTSGATE+NN++I G K +H++ + EH V++ + LQ++GFE+ Y+PVG
Sbjct: 62 TVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG 121
Query: 180 ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGK 239
G V++ + +R DT L+SV NNEIG IQP+EEI ++ K H DA ++G+
Sbjct: 122 KYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAG-KAALHIDATASVGQ 180
Query: 240 IPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTP 299
I VDVEK ++++S + IYGPKGVGAL++R+ ++ +P+I GGGQE G+RSG+ P
Sbjct: 181 IEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEAKL--QPVILGGGQENGLRSGSENVP 238
Query: 300 LIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA 359
IVGFG A EI E + +R+ L DR+++ + K++ +NG E+R N+N+ F+
Sbjct: 239 SIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVL-KIEESYLNGHPEKRLPNNVNVRFS 297
Query: 360 YVEGESLLMGLKEVAV--SSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA 417
Y+EGES+++ L + S+GSAC+S +L+PS+VL A G+ + AH ++ +GR+ T+
Sbjct: 298 YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDE 357
Query: 418 EVDRAIELTVKQVEKLREMSPLY 440
+VDR +E+ +E+LR MSPLY
Sbjct: 358 DVDRLLEVLPGVIERLRSMSPLY 380
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 285 bits (728), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 158/366 (43%), Positives = 226/366 (61%), Gaps = 9/366 (2%)
Query: 59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP 118
+Y D ATT VD RVL+ M+ FY +YGNP+S H G E+ + +E AR ++A ++G SP
Sbjct: 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSP 61
Query: 119 KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV 178
EI FTS ATES N +K V ++ +KR +ITT EHK VL++ ++L +GF++ Y+PV
Sbjct: 62 SEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPV 121
Query: 179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE--FKIPFHTDAAQA 236
+ G+V L+EL + DT L+S+MA NNE+G IQP+E++ +I K+ + H DA Q
Sbjct: 122 DSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQT 181
Query: 237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
+GKIP +EK V S S HK +GPKGVG Y+R+ IR PLI+GGGQERG+RSGT
Sbjct: 182 IGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIR--PLIHGGGQERGLRSGTQ 239
Query: 297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
P IVG A EIA +E+ K + L +L++G+ G + +E L++
Sbjct: 240 NVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL--GAHIITPLEISLPNTLSV 297
Query: 357 SFAYVEGESL--LMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT 414
SF + G +L L+ + VS+ SACTS +VL A+GVD +A +IR + ++
Sbjct: 298 SFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYN 357
Query: 415 TEAEVD 420
TE EVD
Sbjct: 358 TEEEVD 363
>pdb|3VAX|A Chain A, Crytal Structure Of Dnda From Streptomyces Lividans
pdb|3VAX|B Chain B, Crytal Structure Of Dnda From Streptomyces Lividans
Length = 400
Score = 281 bits (719), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 165/382 (43%), Positives = 229/382 (59%), Gaps = 14/382 (3%)
Query: 60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK 119
YLD ATT VD RV D +L + + +GN SR H +G ++ VE AR +A + A P
Sbjct: 23 YLDAAATTRVDQRVADIVLHWMTAEFGNAGSR-HEYGIRAKRGVERAREYLASTVSAEPD 81
Query: 120 EIIFTSGATESNNVSIKGVMHF-YKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV 178
E+IFTSGATESNN+++ G+ + + +RH+IT+ EHK VL+ HL GFE+ +L
Sbjct: 82 ELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTP 141
Query: 179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALG 238
G G ++++ + +RPDT L+S+M VNNE GVIQP+ E+ Q + H DAAQ G
Sbjct: 142 GPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYG 201
Query: 239 KIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRR-----PRIRVEPLINGGGQERGIRS 293
K+P D+ + ++S+SGHKI PKGVGAL RRR R+ +EP++ GGGQER +R
Sbjct: 202 KVPGDLTT-PIDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRP 260
Query: 294 GTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN 353
GTLP PLI+G A +I + E L RLL G+ VNG +
Sbjct: 261 GTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLAST--SFQVNGDQDHVVPHI 318
Query: 354 LNLSFAYVEGESLLMGLKE-VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR 412
LNLSF V+ E+ L+ LK+ VAV++GSA TSAS PS+VLRA+G+ E+ A S+RF
Sbjct: 319 LNLSFEDVDAEAFLVTLKDLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFS--- 375
Query: 413 FTTEAEVDRAIELTVKQVEKLR 434
+T D +E + V KL+
Sbjct: 376 WTPGQATDLDVEELARGVAKLK 397
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 276 bits (705), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/366 (42%), Positives = 221/366 (60%), Gaps = 9/366 (2%)
Query: 59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP 118
+Y D ATT VD RVL+ + FY +YGNP+S H G E+ + E AR ++A ++G SP
Sbjct: 3 VYFDNNATTRVDDRVLEEXIVFYREKYGNPNS-AHGXGIEANLHXEKAREKVAKVLGVSP 61
Query: 119 KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV 178
EI FTS ATES N +K V ++ +KR +ITT EHK VL++ ++L +GF++ Y+PV
Sbjct: 62 SEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETXKYLSXKGFKVKYVPV 121
Query: 179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE--FKIPFHTDAAQA 236
+ G+V L+EL + DT L+S+ A NNE+G IQP+E++ +I K+ + H DA Q
Sbjct: 122 DSRGVVKLEELEKLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQT 181
Query: 237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
+GKIP +EK V S S HK +GPKGVG Y+R+ IR PLI+GGGQERG+RSGT
Sbjct: 182 IGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIR--PLIHGGGQERGLRSGTQ 239
Query: 297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
P IVG A EIA +E+ K L +L++G+ G + +E L++
Sbjct: 240 NVPGIVGAARAXEIAVEELSEAAKHXEKLRSKLVSGLXNL--GAHIITPLEISLPNTLSV 297
Query: 357 SFAYVEGESL--LMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT 414
SF + G +L L+ + VS+ SACTS +VL A GVD +A +IR + ++
Sbjct: 298 SFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAXGVDRRIAQGAIRISLCKYN 357
Query: 415 TEAEVD 420
TE EVD
Sbjct: 358 TEEEVD 363
>pdb|3GZC|A Chain A, Structure Of Human Selenocysteine Lyase
pdb|3GZC|B Chain B, Structure Of Human Selenocysteine Lyase
pdb|3GZD|C Chain C, Human Selenocysteine Lyase, P1 Crystal Form
Length = 440
Score = 218 bits (554), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 217/418 (51%), Gaps = 39/418 (9%)
Query: 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
R +Y+D ATTP++P V+ AM +GNP S + G +++ + AR +A +IG
Sbjct: 25 RKVYMDYNATTPLEPEVIQAMTKAMWEAWGNP-SSPYSAGRKAKDIINAARESLAKMIGG 83
Query: 117 SPKEIIFTSGATESNNVSIKGVM-HFY----------------KDKKRHVITTQTEHKCV 159
P++IIFTSG TESNN+ I V+ HF+ K K H IT+ EH +
Sbjct: 84 KPQDIIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEHDSI 143
Query: 160 LDSCRHLQQEGFE-ITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE 217
HL +E +T++PV G +D++ AA+RP T L+++M NNE G++ P+ E
Sbjct: 144 RLPLEHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMPVPE 203
Query: 218 IGQICKEFK----------IPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGA 267
I Q K I HTDAAQALGK VDVE V +++ GHK YGP+ +GA
Sbjct: 204 ISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPR-IGA 262
Query: 268 LYMRRRPRIR-VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH 326
LY+R + P++ GGGQER R GT TP+I G G A E+ + + + +
Sbjct: 263 LYIRGLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVR 322
Query: 327 DRLLNGIKEKLDGVVVN------GSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSA 380
D L ++ + ++ G+ N ++ ++G +L + + S G+A
Sbjct: 323 DYLEERLEAEFGQKRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVGAA 382
Query: 381 CTS-ASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMS 437
C S +PS VL + GV D+A ++R +GR TT AEVD ++ + V +L + +
Sbjct: 383 CHSDHGDQPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAVAQLEDQA 440
>pdb|3A9X|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase
pdb|3A9X|B Chain B, Crystal Structure Of Rat Selenocysteine Lyase
pdb|3A9Y|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase In Complex
With L-Cysteine
pdb|3A9Y|B Chain B, Crystal Structure Of Rat Selenocysteine Lyase In Complex
With L-Cysteine
pdb|3A9Z|A Chain A, Crystal Structure Of Ras Selenocysteine Lyase In Complex
With Selenopropionate
pdb|3A9Z|B Chain B, Crystal Structure Of Ras Selenocysteine Lyase In Complex
With Selenopropionate
Length = 432
Score = 214 bits (545), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 142/421 (33%), Positives = 224/421 (53%), Gaps = 54/421 (12%)
Query: 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
R +Y+D ATTP++P V+ A+ +GNP S +++ G +++ + TAR+ +A +IG
Sbjct: 18 RKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGG 76
Query: 117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKR-----------------HVITTQTEHKCV 159
P++IIFTSG TESNN+ I + + +++ H IT EH +
Sbjct: 77 KPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSI 136
Query: 160 LDSCRHLQQEGF-EITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE 217
HL ++ E+T++PV +G V ++++ AA+RP T L+++M NNE GVI P+ E
Sbjct: 137 RLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISE 196
Query: 218 IGQICKEF----------KIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGA 267
I + K ++ HTDAAQALGK VDVE V +++ GHK YGP+ +GA
Sbjct: 197 ISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGA 255
Query: 268 LYMRRRPRIR-VEPLINGGGQERGIRSGTLPTPLIVGFGSA-------CEIAKKEM---- 315
LY+R ++ + P++ GGGQER R GT TP+I G G A CE + M
Sbjct: 256 LYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIR 315
Query: 316 DYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF--AYVEGESLLMGLKEV 373
DY +R+ A + ++ + + GV R N S + + G +L + +
Sbjct: 316 DYLEERLEAEFGKRIH-LNSRFPGV-------ERLPNTCNFSIQGSQLRGYMVLAQCQTL 367
Query: 374 AVSSGSACTSASLE-PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432
S G++C S + PS VL + G+ D+A ++R +GR TT AEVD ++ + V +
Sbjct: 368 LASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ 427
Query: 433 L 433
L
Sbjct: 428 L 428
>pdb|3GZD|A Chain A, Human Selenocysteine Lyase, P1 Crystal Form
pdb|3GZD|B Chain B, Human Selenocysteine Lyase, P1 Crystal Form
pdb|3GZD|D Chain D, Human Selenocysteine Lyase, P1 Crystal Form
Length = 440
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 141/418 (33%), Positives = 216/418 (51%), Gaps = 39/418 (9%)
Query: 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
R +Y+D ATTP++P V+ AM +GNP S + G +++ + AR +A +IG
Sbjct: 25 RKVYMDYNATTPLEPEVIQAMTKAMWEAWGNP-SSPYSAGRKAKDIINAARESLAKMIGG 83
Query: 117 SPKEIIFTSGATESNNVSIKGVM-HFY----------------KDKKRHVITTQTEHKCV 159
P++IIFTSG TESNN+ I V+ HF+ K K H IT+ EH +
Sbjct: 84 KPQDIIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEHDSI 143
Query: 160 LDSCRHLQQEGFE-ITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE 217
HL +E +T++PV G +D++ AA+RP T L+++M NNE G++ P+ E
Sbjct: 144 RLPLEHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMPVPE 203
Query: 218 IGQICKEFK----------IPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGA 267
I Q K I HTDAAQALGK VDVE V +++ GHK YGP+ +GA
Sbjct: 204 ISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPR-IGA 262
Query: 268 LYMRRRPRIR-VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH 326
LY+R + P++ GGGQER R GT TP+I G G A E+ + + + +
Sbjct: 263 LYIRGLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVR 322
Query: 327 DRLLNGIKEKLDGVVVN------GSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSA 380
D L ++ + ++ G+ N ++ ++G +L + + S G+A
Sbjct: 323 DYLEERLEAEFGQKRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVGAA 382
Query: 381 CTS-ASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMS 437
S +PS VL + GV D+A ++R +GR TT AEVD ++ + V +L + +
Sbjct: 383 XHSDHGDQPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAVAQLEDQA 440
>pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
pdb|4IXO|B Chain B, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
Length = 380
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/389 (31%), Positives = 204/389 (52%), Gaps = 28/389 (7%)
Query: 59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP 118
+YLD ATT +DPRV + ++ + + NP S H G ++ +ET R+QIA +G +
Sbjct: 10 IYLDHNATTFIDPRVKEFIISL-MDKELNP-SSAHSSGRFAKNLIETVRAQIATALGITL 67
Query: 119 K----EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEIT 174
+I FTS TE NN+ +K +FY + + EH + + + I
Sbjct: 68 SSREYDITFTSSGTEGNNLIMK---NFYDGD---IFISAIEHLSIYNHINYAPN----IK 117
Query: 175 YLPVGADGIVNLD---ELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHT 231
+ V G+V+L+ EL A L+S++ NNE GV+Q + EIG+I K+++ FH+
Sbjct: 118 VISVNTQGLVDLEHLEELLAQSNTSKKLVSIIMANNESGVLQDIAEIGKITKKYEAKFHS 177
Query: 232 DAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGI 291
D Q G+IP++++ + ++SGH I G +G AL ++ P+I GGGQE+ +
Sbjct: 178 DLVQGFGRIPINIKALGLDFATISGHXIGGGQGGAALI--SSSNFQITPMIIGGGQEKSV 235
Query: 292 RSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYI 351
RSGT I GFG A + + ++ +I L + L +K+ + +V+ ++ R
Sbjct: 236 RSGTENVLAIAGFGLASALRTDNISENYIKIKKLQENLEKKLKKYPNVNIVSNNVARLPN 295
Query: 352 GNLNLSFAYVEGESLLMG--LKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG 409
L ++ + ++ L+G L + VSSGSAC+S + S+VL +GV E+ A +SIR
Sbjct: 296 TTL-ITIPNTDAQAKLIGFDLHNICVSSGSACSSGKISKSHVLTNMGVGEEEAKSSIRIS 354
Query: 410 IGRFTTEAEVDRAIELTVKQVEKLREMSP 438
+ T R IE ++ E++ ++ P
Sbjct: 355 LSHTNTV----RDIEAFIEAFEEIYDVIP 379
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 163/397 (41%), Gaps = 47/397 (11%)
Query: 54 IAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIAD 112
+ G PL YLD A+ +V+DA FY Y H+ H ++ +E R + +
Sbjct: 19 VNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHAGAHTLSAQATEKMENVRKRASL 78
Query: 113 LIGA-SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEG 170
I A S +E++F G TE N+ + ++I +Q EH + + L + G
Sbjct: 79 FINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG 138
Query: 171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH 230
E+ +P+ DG + L+ L T L+++ V+N +G P+ E+ + +
Sbjct: 139 AELRVIPLNPDGTLQLETLPTLFDAATRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 198
Query: 231 TDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERG 290
D AQA+ PVDV+ + SGHK+YGP G+G LY++ + P GG
Sbjct: 199 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIAT 258
Query: 291 I---------------RSGTLPTPLIVGFGSACE---------IAKKEMDYDHKRITALH 326
+ +GT T I+G G+A E IA+ E + H ++ L
Sbjct: 259 VSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQL- 317
Query: 327 DRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASL 386
E + + + G R + NL + + +AV +G C + L
Sbjct: 318 --------ESVPDLTLYGPQARLGVIAFNLGAHHAYDVGSFLDNYGIAVRTGHHC-AMPL 368
Query: 387 EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAI 423
Y + A+ R + + T EVDR +
Sbjct: 369 MAYYNVPAM----------CRASLAMYNTHEEVDRLV 395
>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With
L-Propargylglycine
Length = 406
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 162/397 (40%), Gaps = 47/397 (11%)
Query: 54 IAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIAD 112
+ G PL YLD A+ +V+DA FY Y H H ++ +E R + +
Sbjct: 19 VNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASL 78
Query: 113 LIGA-SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEG 170
I A S +E++F G TE N+ + ++I +Q EH + + L + G
Sbjct: 79 FINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG 138
Query: 171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH 230
E+ +P+ DG + L+ L T L+++ V+N +G P+ E+ + +
Sbjct: 139 AELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 198
Query: 231 TDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERG 290
D AQA+ PVDV+ + SGHK+YGP G+G LY++ + P GG
Sbjct: 199 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIAT 258
Query: 291 I---------------RSGTLPTPLIVGFGSACE---------IAKKEMDYDHKRITALH 326
+ +GT T I+G G+A E IA+ E + H ++ L
Sbjct: 259 VSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQL- 317
Query: 327 DRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASL 386
E + + + G R + NL + + +AV +G C + L
Sbjct: 318 --------ESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHC-AMPL 368
Query: 387 EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAI 423
Y + A+ R + + T EVDR +
Sbjct: 369 MAYYNVPAM----------CRASLAMYNTHEEVDRLV 395
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 162/397 (40%), Gaps = 47/397 (11%)
Query: 54 IAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIAD 112
+ G PL YLD A+ +V+DA FY Y H H ++ +E R + +
Sbjct: 21 VNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASL 80
Query: 113 LIGA-SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEG 170
I A S +E++F G TE N+ + ++I +Q EH + + L + G
Sbjct: 81 FINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG 140
Query: 171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH 230
E+ +P+ DG + L+ L T L+++ V+N +G P+ E+ + +
Sbjct: 141 AELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 200
Query: 231 TDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERG 290
D AQA+ PVDV+ + SGHK+YGP G+G LY++ + P GG
Sbjct: 201 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIAT 260
Query: 291 I---------------RSGTLPTPLIVGFGSACE---------IAKKEMDYDHKRITALH 326
+ +GT T I+G G+A E IA+ E + H ++ L
Sbjct: 261 VSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQL- 319
Query: 327 DRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASL 386
E + + + G R + NL + + +AV +G C + L
Sbjct: 320 --------ESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHC-AMPL 370
Query: 387 EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAI 423
Y + A+ R + + T EVDR +
Sbjct: 371 MAYYNVPAM----------CRASLAMYNTHEEVDRLV 397
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
PERSULFIDE Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
PERSELENIDE Intermediate (Residue Csz)
Length = 406
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 140/327 (42%), Gaps = 30/327 (9%)
Query: 54 IAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIAD 112
+ G PL YLD A+ +V+DA FY Y H H ++ +E R + +
Sbjct: 19 VNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASL 78
Query: 113 LIGA-SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEG 170
I A S +E++F G TE N+ + ++I +Q EH + + L + G
Sbjct: 79 FINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG 138
Query: 171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH 230
E+ +P+ DG + L+ L T L+++ V+N +G P+ E+ + +
Sbjct: 139 AELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 198
Query: 231 TDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERG 290
D AQA+ PVDV+ + SGHK+YGP G+G LY++ + P GG
Sbjct: 199 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIAT 258
Query: 291 I---------------RSGTLPTPLIVGFGSACE---------IAKKE---MDYDHKRIT 323
+ +GT T I+G G+A E IA+ E M Y ++
Sbjct: 259 VSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLE 318
Query: 324 ALHDRLLNGIKEKLDGVVVNGSMERRY 350
++ D L G + +L + N Y
Sbjct: 319 SVPDLTLYGPQNRLGVIAFNLGKHHAY 345
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 115/237 (48%), Gaps = 5/237 (2%)
Query: 53 RIAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIA 111
I G PL YLD AT+ VL+ ++ +Y + N H H + A E R+++A
Sbjct: 23 EINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVA 82
Query: 112 DLIGA-SPKEIIFTSGATESNN-VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQ-Q 168
I A SP+EI++T ATE+ N V+ M+ K +ITT EH L + + +
Sbjct: 83 KFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDE-IITTVMEHHSNLVPWQMVAAK 141
Query: 169 EGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIP 228
G + ++ + +L+ + + T L++V+ ++N +G + P EEI Q+ +
Sbjct: 142 TGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAK 201
Query: 229 FHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGG 285
DA Q+ P+DV+ + + SGHK+ P G+G LY + + P GG
Sbjct: 202 VLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGG 258
>pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELQ|B Chain B, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide.
pdb|1ELU|B Chain B, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide
Length = 390
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 107 RSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL 166
R +A+ P I T T ++ + G+ D+ ++ T EH ++ + +
Sbjct: 65 RQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDE---ILLTDCEHPGIIAIVQAI 121
Query: 167 QQEGFEITY--LPVGADGIVNLDELRAA------IRPDTGLISVMAVNNEIGVIQPMEEI 218
F ITY PV A L++ AA + P T L+ + + G + P+ EI
Sbjct: 122 AAR-FGITYRFFPVAA----TLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEI 176
Query: 219 GQICK----EFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIY-GPKGVGALYMR 271
+C+ + + D AQ+ G +P+D + V + +GHK + GP GVG LY+
Sbjct: 177 MAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIH 234
>pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N2T|B Chain B, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N31|A Chain A, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
pdb|1N31|B Chain B, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
Length = 386
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 21/178 (11%)
Query: 107 RSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL 166
R +A+ P I T T ++ + G+ D+ ++ T EH ++ + +
Sbjct: 61 RQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDE---ILLTDCEHPGIIAIVQAI 117
Query: 167 QQEGFEITY--LPVGADGIVNLDELRAA------IRPDTGLISVMAVNNEIGVIQPMEEI 218
F ITY PV A L++ AA + P T L+ + + G + P+ EI
Sbjct: 118 AAR-FGITYRFFPVAA----TLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEI 172
Query: 219 GQICK----EFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIY-GPKGVGALYMR 271
+C+ + + D AQ+ G +P+D + V + +GH + GP GVG LY+
Sbjct: 173 MAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHAWFAGPAGVGGLYIH 230
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 105/260 (40%), Gaps = 27/260 (10%)
Query: 97 WESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEH 156
+E+EV TA D G + + TSG TES +++K Y+D R
Sbjct: 140 FEAEVVAMTAHMLGGDAAGGTVCGTV-TSGGTESLLLAMKT----YRDWARATKGITAPE 194
Query: 157 KCVLDSC-----RHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211
V S + Q G ++ P+ AD ++ +R AI P+T +++ A GV
Sbjct: 195 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGXPHGV 254
Query: 212 IQPMEEIGQICKEFKIPFHTDA---------AQALGK--IPVDVEKWNVSLMSLSGHKI- 259
+ P+ EI + E I H DA A+ LG P D V+ +S HK
Sbjct: 255 VDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYG 314
Query: 260 YGPKGVGALYMRRRPRIRVEPLI----NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEM 315
YG KG + RR + + I GG +G+ P L +A +E
Sbjct: 315 YGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEG 374
Query: 316 DYDH-KRITALHDRLLNGIK 334
D +RI DRL G++
Sbjct: 375 YLDATRRILQAADRLKAGVR 394
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 105/260 (40%), Gaps = 27/260 (10%)
Query: 97 WESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEH 156
+E+EV TA D G + + TSG TES +++K Y+D R
Sbjct: 144 FEAEVVAMTAHMLGGDAAGGTVCGTV-TSGGTESLLLAMKT----YRDWARATKGITAPE 198
Query: 157 KCVLDSC-----RHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211
V S + Q G ++ P+ AD ++ +R AI P+T +++ A GV
Sbjct: 199 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGV 258
Query: 212 IQPMEEIGQICKEFKIPFHTDA---------AQALGK--IPVDVEKWNVSLMSLSGHKI- 259
+ P+ EI + E I H DA A+ LG P D V+ +S HK
Sbjct: 259 VDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYG 318
Query: 260 YGPKGVGALYMRRRPRIRVEPLI----NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEM 315
YG KG + RR + + I GG +G+ P L +A +E
Sbjct: 319 YGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEG 378
Query: 316 DYDH-KRITALHDRLLNGIK 334
D +RI DRL G++
Sbjct: 379 YLDATRRILQAADRLKAGVR 398
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 104/260 (40%), Gaps = 27/260 (10%)
Query: 97 WESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEH 156
+E+EV TA D G + + TSG TES +++K Y+D R
Sbjct: 144 FEAEVVAMTAHMLGGDAAGGTVCGTV-TSGGTESLLLAMKT----YRDWARATKGITAPE 198
Query: 157 KCVLDSC-----RHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211
V S + Q G ++ P+ AD ++ +R AI P+T +++ A GV
Sbjct: 199 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGV 258
Query: 212 IQPMEEIGQICKEFKIPFHTDA---------AQALGK--IPVDVEKWNVSLMSLSGHKI- 259
+ P+ EI + E I H DA A+ LG P D V+ +S H
Sbjct: 259 VDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHXYG 318
Query: 260 YGPKGVGALYMRRRPRIRVEPLI----NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEM 315
YG KG + RR + + I GG +G+ P L +A +E
Sbjct: 319 YGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEG 378
Query: 316 DYDH-KRITALHDRLLNGIK 334
D +RI DRL G++
Sbjct: 379 YLDATRRILQAADRLKAGVR 398
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 104/260 (40%), Gaps = 27/260 (10%)
Query: 97 WESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEH 156
+E+EV TA D G + + TSG TES +++K Y+D R
Sbjct: 140 FEAEVVAMTAHMLGGDAAGGTVCGTV-TSGGTESLLLAMKT----YRDWARATKGITAPE 194
Query: 157 KCVLDSC-----RHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211
V S + Q G ++ P+ AD ++ +R AI P+T +++ A GV
Sbjct: 195 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGV 254
Query: 212 IQPMEEIGQICKEFKIPFHTDA---------AQALGK--IPVDVEKWNVSLMSLSGHKI- 259
+ P+ EI + E I H DA A+ LG P D V+ +S H
Sbjct: 255 VDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHAYG 314
Query: 260 YGPKGVGALYMRRRPRIRVEPLI----NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEM 315
YG KG + RR + + I GG +G+ P L +A +E
Sbjct: 315 YGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEG 374
Query: 316 DYDH-KRITALHDRLLNGIK 334
D +RI DRL G++
Sbjct: 375 YLDATRRILQAADRLKAGVR 394
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 104/260 (40%), Gaps = 27/260 (10%)
Query: 97 WESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEH 156
+E+EV TA D G + + TSG TES +++K Y+D R
Sbjct: 140 FEAEVVAMTAHMLGGDAAGGTVCGTV-TSGGTESLLLAMKT----YRDWARATKGITAPE 194
Query: 157 KCVLDSC-----RHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211
V S + Q G ++ P+ AD ++ +R AI P+T +++ A GV
Sbjct: 195 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGV 254
Query: 212 IQPMEEIGQICKEFKIPFHTDA---------AQALGK--IPVDVEKWNVSLMSLSGHKI- 259
+ P+ EI + E I H DA A+ LG P D V+ +S H
Sbjct: 255 VDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHXYG 314
Query: 260 YGPKGVGALYMRRRPRIRVEPLI----NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEM 315
YG KG + RR + + I GG +G+ P L +A +E
Sbjct: 315 YGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEG 374
Query: 316 DYDH-KRITALHDRLLNGIK 334
D +RI DRL G++
Sbjct: 375 YLDATRRILQAADRLKAGVR 394
>pdb|1VJO|A Chain A, Crystal Structure Of Alanine--Glyoxylate Aminotransferase
(Alr1004) From Nostoc Sp. At 1.70 A Resolution
Length = 393
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 183 IVNLDELRAAI---RPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGK 239
+ +L+ELR A+ RP +++++ G QP+E +G++C+EF D +LG
Sbjct: 145 VFSLEELRTALETHRP--AILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGG 202
Query: 240 IPVDVEKWNVSLMSLSGHKIYG 261
+P+ ++ W V L K G
Sbjct: 203 VPIFLDAWGVDLAYSCSQKGLG 224
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 124 TSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQE------GFEITYLP 177
SG TE+N +++ + + +++K+R ++ K ++ H E E Y P
Sbjct: 92 VSGGTEANLXALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREXXDLEYIYAP 151
Query: 178 VGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
+ D ++ ++ A+ D I +A E+G I +EE+ +I KE I H DAA
Sbjct: 152 IKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFG 211
Query: 237 LGKIPVDVEKW 247
IP +K+
Sbjct: 212 GLVIPFLDDKY 222
>pdb|3NNK|A Chain A, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|B Chain B, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|C Chain C, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|D Chain D, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|E Chain E, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|F Chain F, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|G Chain G, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|H Chain H, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|J Chain J, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|K Chain K, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|L Chain L, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|M Chain M, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|O Chain O, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|P Chain P, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|R Chain R, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|S Chain S, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
Length = 411
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 193 IRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM 252
IRP L+ + + ++QP+ E+G+IC+ + F+TDA +LG P++ + W + +
Sbjct: 137 IRPR--LLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAV 194
Query: 253 SLSGHK-IYGPKGVGALYMRRR 273
S + GP G + + R
Sbjct: 195 SAGMQXCLGGPSGTSPITLSAR 216
>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
Length = 386
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 14/144 (9%)
Query: 184 VNLDELRAAIR--PDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP 241
V ++L A+R PD +++ GV+ P+ E+ ++ KE DA A+G
Sbjct: 132 VKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGAD 191
Query: 242 VDVEKWNVSLMSLSGHKIYG-PKG--VGAL---------YMRRRPRIRVEPLINGGGQER 289
+ +KW + ++ S K +G P G +GA M R PL +E+
Sbjct: 192 IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEK 251
Query: 290 GIRSGTLPTPLIVGFGSACEIAKK 313
T P P + G A I +K
Sbjct: 252 ESTPSTPPMPQVFGINVALRIIEK 275
>pdb|2CH1|A Chain A, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|B Chain B, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|C Chain C, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|D Chain D, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH2|A Chain A, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|B Chain B, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|C Chain C, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|D Chain D, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
Length = 396
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 210 GVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKGV 265
G++QP+E +GQIC + DA +L +P ++KW + + K+ G P G+
Sbjct: 157 GLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGI 213
>pdb|3KGX|A Chain A, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.80 A Resolution
pdb|3KGX|B Chain B, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.80 A Resolution
pdb|3KGW|A Chain A, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.65 A Resolution
pdb|3KGW|B Chain B, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.65 A Resolution
Length = 393
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 199 LISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK 258
L+ ++ + GV+QP++ G++C ++ D+ +LG +P+ +++ + +M S K
Sbjct: 151 LLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQK 210
Query: 259 IY-GPKGVGALYMRRRPRIRV 278
+ P G+ + + + +V
Sbjct: 211 VLNAPPGISLISFNDKAKYKV 231
>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70
A Resolution
pdb|3P6K|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
pdb|3P6K|B Chain B, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
Length = 375
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 95 FGW-ESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQ 153
+GW E A + + SQ+ G P++I+ T+GAT +N + V++ + HVI+
Sbjct: 59 YGWIEGSPAFKKSVSQL--YTGVKPEQILQTNGATGANLL----VLYSLIEPGDHVISLY 112
Query: 154 TEHKCVLDSCRHLQQEGFEITYLPVGADG--IVNLDELRAAIRPDTGLISVMAVNNEIGV 211
++ + D + L G E+ + + + +L++LR IRP T I + NN G
Sbjct: 113 PTYQQLYDIPKSL---GAEVDLWQIEEENGWLPDLEKLRQLIRPTTKXICINNANNPTGA 169
Query: 212 IQP---MEEIGQICKE 224
+ +EE+ +I E
Sbjct: 170 VXDRTYLEELVEIASE 185
>pdb|2HUF|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase
pdb|2HUF|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase
pdb|2HUI|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Glyoxylic Acid
pdb|2HUI|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Glyoxylic Acid
pdb|2HUU|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Alanine
pdb|2HUU|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Alanine
Length = 393
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 184 VNLDELRAAI---RPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI 240
++LDE+R A+ +P ++ + ++ GV+Q +E +G +C + D +LG
Sbjct: 131 LSLDEIRDALLIHKPS--VLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGA 188
Query: 241 PVDVEKWNVSLMSLSGHKIYG-PKGVGAL---------YMRRRPRIRV 278
P+ +++W + M + G P G+ + Y RR +++V
Sbjct: 189 PMFMDRWEIDAMYTGSQXVLGAPPGITPVSFSHRAVERYKRRNTKVKV 236
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 184 VNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAA--------- 234
V+L +++ I +T L+ A N G+ +E +G+I +++K+P H D+
Sbjct: 194 VDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFM 253
Query: 235 --QALGKIP-VDVEKWNVSLMSLSGHKI-YGPKGVGALYMR----RRPRIRVEPLINGGG 286
+P +D V+ +S HK + PKG + R R + V P GG
Sbjct: 254 EKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGL 313
Query: 287 QERGIRSGTLPTPLIVG 303
+G+ P ++VG
Sbjct: 314 YGSPTLAGSRPGAIVVG 330
>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
Length = 371
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 17/172 (9%)
Query: 108 SQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQ 167
+Q+ +G + T+GA E+ VMH K V+ + C S +
Sbjct: 61 NQLPKFLGCDVARV--TNGAREAKF----AVMHSLAKKDAWVVMDEN---CHYSSYVAAE 111
Query: 168 QEGFEITYLPVG--ADGIVNLDELRAAI-----RPDTGLISVMAVNNEIGVIQPMEEIGQ 220
+ G I +P D + + I R + L + + G + +++I +
Sbjct: 112 RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAK 171
Query: 221 ICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKG-VGALYMR 271
+C E+ +P + A A+G++PV +++ + SGHK G +G + M+
Sbjct: 172 VCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMK 223
>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1
Length = 497
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 184 VNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAA--------- 234
V+L +++ I +T L+ A N G+ +E +G+I +++K+P H D+
Sbjct: 194 VDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFM 253
Query: 235 --QALGKIP-VDVEKWNVSLMSLSGHKI-YGPKGVGALYMR----RRPRIRVEPLINGGG 286
+P +D V+ +S H + PKG + R R + V P GG
Sbjct: 254 EKAGYKNLPLLDFRVPGVTSISCDTHXYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGL 313
Query: 287 QERGIRSGTLPTPLIVG 303
+G+ P ++VG
Sbjct: 314 YGSPTLAGSRPGAIVVG 330
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 199 LISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK 258
L+S A G P+ + ICK++KI H DAA G + KW +S + +
Sbjct: 244 LVSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSGVERANSV 303
Query: 259 IYGP 262
+ P
Sbjct: 304 TWNP 307
>pdb|1QZ9|A Chain A, The Three Dimensional Structure Of Kynureninase From
Pseudomonas Fluorescens
Length = 416
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 108 SQIADLIGASPKEIIFTSGATESNNV----SIKGVMHFYKDKKRHVITTQTEH----KCV 159
+++A LIGA E++ T T S N+ S + + +R VI T+T + +
Sbjct: 78 NRLATLIGARDGEVVVTD--TTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYI 135
Query: 160 LDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIG 219
+ + Q+G+ + + + +EL AI DT ++ + VN + G + M+ +
Sbjct: 136 AEGLADMLQQGYTLRL-------VDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALT 188
Query: 220 QICKEFKIPFHTDAAQALGKIPVDVEK 246
+ E D A + G +PVD+ +
Sbjct: 189 ALSHECGALAIWDLAHSAGAVPVDLHQ 215
>pdb|3LWS|A Chain A, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|B Chain B, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|C Chain C, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|D Chain D, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|E Chain E, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|F Chain F, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
Length = 357
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 29/152 (19%)
Query: 103 VETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCV-LD 161
+E + AD++G + +F T + V+++ + + +T+++ V
Sbjct: 49 IEPFEQKFADVLGXD--DAVFFPSGTXAQQVALR------------IWSDETDNRTVAYH 94
Query: 162 SCRHLQ---QEGFE----ITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ 213
HL+ Q+G + I + VGA D + LDE++A PD + + EIG +
Sbjct: 95 PLCHLEIHEQDGLKELHPIETILVGAADRLXTLDEIKAL--PDIACLLLELPQREIGGVA 152
Query: 214 P----MEEIGQICKEFKIPFHTDAAQALGKIP 241
P +E I + C+E I H D A+ +P
Sbjct: 153 PAFSELETISRYCRERGIRLHLDGARLFEXLP 184
>pdb|1M32|A Chain A, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|B Chain B, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|C Chain C, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|D Chain D, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|E Chain E, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|F Chain F, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
Length = 366
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 181 DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI 240
D I+N D P I+ + G + P++E+G + + + DA + G I
Sbjct: 123 DAILNAD-------PTISHIAXVHSETTTGXLNPIDEVGALAHRYGKTYIVDAXSSFGGI 175
Query: 241 PVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRR 273
P D+ ++ + S +K I G G + R +
Sbjct: 176 PXDIAALHIDYLISSANKCIQGVPGFAFVIAREQ 209
>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
Length = 409
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 185 NLDELRAAI-RPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALG 238
N D LR I R G+I V ++ + +G I P+ E+ I KEF D + +LG
Sbjct: 174 NCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLG 228
>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
Length = 393
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 185 NLDELRAAI-RPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALG 238
N D LR I R G+I V ++ + +G I P+ E+ I KEF D + +LG
Sbjct: 154 NCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLG 208
>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
Length = 389
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 185 NLDELRAAI-RPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALG 238
N D LR I R G+I V ++ + +G I P+ E+ I KEF D + +LG
Sbjct: 154 NCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLG 208
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE 224
G+ + Y PV + +LD +RAAIRP T LI V N + I + I Q+ +
Sbjct: 128 GWNVEYTPVA---LADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGAD 179
>pdb|1O61|A Chain A, Crystal Structure Of A Plp-Dependent Enzyme With Plp
pdb|1O61|B Chain B, Crystal Structure Of A Plp-Dependent Enzyme With Plp
pdb|1O62|A Chain A, Crystal Structure Of The Apo Form Of A Plp-Dependent
Enzyme
pdb|1O62|B Chain B, Crystal Structure Of The Apo Form Of A Plp-Dependent
Enzyme
pdb|1O69|A Chain A, Crystal Structure Of A Plp-Dependent Enzyme
pdb|1O69|B Chain B, Crystal Structure Of A Plp-Dependent Enzyme
Length = 394
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 184 VNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD 243
+++D L+ AI+ + + + G M+EI +ICKE I DAA+ALG +
Sbjct: 107 IDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKN 166
Query: 244 VEKWN---VSLMSLSGHKIYGPKGVGALYMRRRPRI 276
+ S +G+KI G G L + + +I
Sbjct: 167 KALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKI 202
>pdb|3R9A|A Chain A, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|C Chain C, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 394
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 207 NEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM 252
+ GV+QP++ G++C +K D+ +LG P+ +++ + ++
Sbjct: 160 SSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDIL 205
>pdb|1H0C|A Chain A, The Crystal Structure Of Human Alanine:glyoxylate
Aminotransferase
Length = 392
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 207 NEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM 252
+ GV+QP++ G++C +K D+ +LG P+ +++ + ++
Sbjct: 158 SSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDIL 203
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 22/141 (15%)
Query: 113 LIGASPKEIIFTSGATESN--NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEG 170
L+G S + IF G + SN V++ + K+R + T C + Q+G
Sbjct: 160 LVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKG 219
Query: 171 FEITYLPVGADGI--VNLDELRAAIRPDT---------------GLISVMAVNNEIGVIQ 213
+L +G D + V DE R + P+ L+S + +G
Sbjct: 220 --AAFLGLGTDSVRVVKADE-RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD 276
Query: 214 PMEEIGQICKEFKIPFHTDAA 234
P+E I +C+ + H DAA
Sbjct: 277 PLEAIADVCQRHGLWLHVDAA 297
>pdb|1WYT|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYT|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYU|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYV|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
Length = 474
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVN-NEIGVIQ-PMEEIGQICKEFKI 227
G+++ +P G +G V+L+ L+ + P ++M N N +G+ + + EI ++CKE +
Sbjct: 177 GYQVREIPSGPEGEVDLEALKRELGPHVA--ALMLTNPNTLGLFERRILEISRLCKEAGV 234
Query: 228 PFHTDAAQ 235
+ D A
Sbjct: 235 QLYYDGAN 242
>pdb|2YRI|A Chain A, Crystal Structure Of Alanine-pyruvate Aminotransferase
With 2- Methylserine
pdb|2YRI|B Chain B, Crystal Structure Of Alanine-pyruvate Aminotransferase
With 2- Methylserine
pdb|2YRR|A Chain A, Hypothetical Alanine Aminotransferase (Tth0173) From
Thermus Thermophilus Hb8
pdb|2YRR|B Chain B, Hypothetical Alanine Aminotransferase (Tth0173) From
Thermus Thermophilus Hb8
Length = 353
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 190 RAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNV 249
RA R +++++ GV+ P E IG + KE F DA LG +P + V
Sbjct: 118 RALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGV 177
>pdb|3ISL|A Chain A, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
pdb|3ISL|B Chain B, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
Length = 416
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 199 LISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNV 249
+++++ G I P++ IG+ C+ F DA +G V V++W +
Sbjct: 139 IVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKI 189
>pdb|1J04|A Chain A, Structural Mechanism Of Enzyme Mistargeting In Hereditary
Kidney Stone Disease In Vitro
Length = 392
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 210 GVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM 252
GV+QP++ ++C +K D+ +LG P+ +++ + ++
Sbjct: 161 GVLQPLDGFRELCHRYKCLLLVDSVASLGGTPLYMDRQGIDIL 203
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 210 GVIQPMEEIGQICKEFKIPFHTDAAQALG 238
G P++EI IC+++ + H DAA G
Sbjct: 262 GAFDPIQEIADICEKYNLWLHVDAAWGGG 290
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 210 GVIQPMEEIGQICKEFKIPFHTDAAQALG 238
G P++EI IC+++ + H DAA G
Sbjct: 259 GAFDPIQEIADICEKYNLWLHVDAAWGGG 287
>pdb|3PJ0|A Chain A, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|B Chain B, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|C Chain C, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|D Chain D, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
Length = 359
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 68/141 (48%), Gaps = 18/141 (12%)
Query: 103 VETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKK--RHVITTQTEHKCV- 159
+E ++IA ++G + F SG T + ++++ + D+K R V H +
Sbjct: 50 IEDFETKIAKILGKQSA-VFFPSG-TXAQQIALR----IWADRKENRRVAYHPLSHLEIH 103
Query: 160 -LDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVM---AVNNEIGVIQP 214
D + LQQ IT L +G A+ ++ +D++++ P + ++ + + ++ +
Sbjct: 104 EQDGLKELQQ----ITPLLLGTANQLLTIDDIKSLREPVSSVLIELPQREIGGQLPAFEE 159
Query: 215 MEEIGQICKEFKIPFHTDAAQ 235
+E+I + C E I H D A+
Sbjct: 160 LEKISEYCHEQGISLHLDGAR 180
>pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate
Aminotransferase From Listeria Innocua Clip11262.
pdb|3FFH|B Chain B, The Crystal Structure Of Histidinol-phosphate
Aminotransferase From Listeria Innocua Clip11262
Length = 363
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 22/131 (16%)
Query: 86 GNPHSRTHLF--GWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYK 143
N T ++ GW S + R ++AD +E+IFT+G E +
Sbjct: 55 ANSSVETEIYPDGWASSL-----RKEVADFYQLEEEELIFTAGVDE-----------LIE 98
Query: 144 DKKRHVITTQTEHKCVLDSCRHLQQ----EGFEITYLPVGADGIVNLDELRAAIRPDTGL 199
R ++ T T + +Q EG E+ +P+ DG +L+ AI T +
Sbjct: 99 LLTRVLLDTTTNTVXATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGXLNAIDEKTTI 158
Query: 200 ISVMAVNNEIG 210
+ + NN G
Sbjct: 159 VWICNPNNPTG 169
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIP 228
I +P G +L+ L+AAI P+T + + E G+ P ++E ++CK+ +
Sbjct: 164 IIVIPYG-----DLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVL 218
Query: 229 FHTDAAQ 235
F D Q
Sbjct: 219 FVADEIQ 225
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 88 PHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK 136
P ++G ++E VET+ + + G++ KE+ GA +S V++K
Sbjct: 138 PAVSAGIYGCDAEKVVETSLEAVKNFKGSAVKEVAEVHGARKSAEVALK 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,760,003
Number of Sequences: 62578
Number of extensions: 538350
Number of successful extensions: 1383
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1283
Number of HSP's gapped (non-prelim): 59
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)