Query 040741
Match_columns 457
No_of_seqs 183 out of 1886
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 18:21:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvm_A Cysteine desulfurase; s 100.0 3E-49 1E-53 396.5 43.3 404 53-457 18-423 (423)
2 4hvk_A Probable cysteine desul 100.0 2.5E-47 8.5E-52 376.6 39.3 379 58-441 1-381 (382)
3 4eb5_A Probable cysteine desul 100.0 3.8E-46 1.3E-50 368.6 39.8 379 58-441 1-381 (382)
4 1eg5_A Aminotransferase; PLP-d 100.0 2E-43 7E-48 349.1 41.2 372 59-435 3-378 (384)
5 3vax_A Putative uncharacterize 100.0 2.4E-44 8.4E-49 358.1 30.2 376 53-432 16-399 (400)
6 1kmj_A Selenocysteine lyase; p 100.0 6.6E-41 2.3E-45 333.6 38.7 363 57-433 23-405 (406)
7 1t3i_A Probable cysteine desul 100.0 8.1E-40 2.8E-44 327.3 40.5 367 57-435 28-415 (420)
8 3cai_A Possible aminotransfera 100.0 3.8E-40 1.3E-44 328.6 37.7 357 57-428 26-404 (406)
9 3a9z_A Selenocysteine lyase; P 100.0 4.4E-40 1.5E-44 331.0 37.8 379 53-434 14-429 (432)
10 3qm2_A Phosphoserine aminotran 100.0 6.1E-41 2.1E-45 329.5 21.8 340 58-433 27-385 (386)
11 3e77_A Phosphoserine aminotran 100.0 2E-39 6.9E-44 316.8 28.6 342 60-433 15-375 (377)
12 2z9v_A Aspartate aminotransfer 100.0 2.8E-38 9.4E-43 313.5 31.3 346 53-434 4-372 (392)
13 1elu_A L-cysteine/L-cystine C- 100.0 1.7E-36 5.7E-41 300.3 38.7 345 53-428 12-387 (390)
14 1iug_A Putative aspartate amin 100.0 1.7E-37 5.7E-42 303.2 29.5 331 60-433 3-348 (352)
15 2dr1_A PH1308 protein, 386AA l 100.0 1.2E-36 4.2E-41 300.8 33.7 340 57-434 19-380 (386)
16 2huf_A Alanine glyoxylate amin 100.0 5.2E-37 1.8E-41 304.4 30.8 345 55-435 16-385 (393)
17 3m5u_A Phosphoserine aminotran 100.0 2.2E-37 7.4E-42 301.5 26.5 332 58-432 5-359 (361)
18 3e9k_A Kynureninase; kynurenin 100.0 2.8E-37 9.7E-42 313.5 26.5 351 56-433 66-461 (465)
19 3zrp_A Serine-pyruvate aminotr 100.0 5E-37 1.7E-41 303.3 27.3 338 60-435 4-365 (384)
20 3nnk_A Ureidoglycine-glyoxylat 100.0 1.9E-36 6.4E-41 302.1 30.3 343 56-436 11-393 (411)
21 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 1.1E-36 3.9E-41 299.5 25.6 344 55-432 6-369 (371)
22 1vjo_A Alanine--glyoxylate ami 100.0 7.7E-36 2.6E-40 296.1 29.5 337 56-430 32-392 (393)
23 3isl_A Purine catabolism prote 100.0 5.9E-36 2E-40 299.0 28.1 339 60-434 13-391 (416)
24 1qz9_A Kynureninase; kynurenin 100.0 4.4E-35 1.5E-39 292.9 34.0 357 50-439 21-408 (416)
25 2yrr_A Aminotransferase, class 100.0 1.3E-35 4.4E-40 289.6 27.3 332 60-431 2-351 (353)
26 2ch1_A 3-hydroxykynurenine tra 100.0 1.7E-35 5.8E-40 293.9 28.5 347 57-442 17-389 (396)
27 3ffr_A Phosphoserine aminotran 100.0 1.2E-34 4.1E-39 283.9 32.7 335 59-430 5-361 (362)
28 3kgw_A Alanine-glyoxylate amin 100.0 4E-35 1.4E-39 290.5 29.5 340 59-434 24-389 (393)
29 2c0r_A PSAT, phosphoserine ami 100.0 1.3E-34 4.4E-39 284.2 31.4 338 57-433 3-361 (362)
30 1m32_A 2-aminoethylphosphonate 100.0 6.7E-35 2.3E-39 286.0 26.9 333 60-432 6-364 (366)
31 3f0h_A Aminotransferase; RER07 100.0 3.7E-34 1.3E-38 282.2 32.1 336 59-432 20-373 (376)
32 3f9t_A TDC, L-tyrosine decarbo 100.0 3.5E-33 1.2E-37 276.7 33.1 332 59-431 33-396 (397)
33 1w23_A Phosphoserine aminotran 100.0 6.9E-34 2.3E-38 278.6 26.5 337 59-432 4-359 (360)
34 2bkw_A Alanine-glyoxylate amin 100.0 1.7E-33 5.8E-38 278.1 26.8 340 59-433 6-384 (385)
35 3ffh_A Histidinol-phosphate am 100.0 1.4E-32 4.9E-37 269.7 31.5 318 56-429 32-362 (363)
36 3get_A Histidinol-phosphate am 100.0 1.1E-32 3.8E-37 270.7 29.1 317 56-430 30-364 (365)
37 2dgk_A GAD-beta, GADB, glutama 100.0 1.7E-31 5.7E-36 270.0 37.9 348 67-440 52-441 (452)
38 3hbx_A GAD 1, glutamate decarb 100.0 2.2E-31 7.4E-36 272.1 38.5 350 60-436 59-447 (502)
39 3ly1_A Putative histidinol-pho 100.0 2.2E-32 7.6E-37 267.3 29.6 320 55-432 15-351 (354)
40 3euc_A Histidinol-phosphate am 100.0 1.9E-32 6.4E-37 269.2 28.6 320 56-431 30-366 (367)
41 3dzz_A Putative pyridoxal 5'-p 100.0 1.6E-32 5.6E-37 271.7 28.2 337 55-433 26-389 (391)
42 1v2d_A Glutamine aminotransfer 100.0 2.2E-32 7.5E-37 270.2 28.1 332 56-436 25-374 (381)
43 4dq6_A Putative pyridoxal phos 100.0 3.8E-32 1.3E-36 269.2 29.5 332 56-430 32-390 (391)
44 2w8t_A SPT, serine palmitoyltr 100.0 3.4E-31 1.2E-35 265.8 35.5 332 58-434 64-416 (427)
45 1gd9_A Aspartate aminotransfer 100.0 7.3E-32 2.5E-36 267.2 29.0 332 56-434 26-387 (389)
46 1j32_A Aspartate aminotransfer 100.0 5.7E-32 1.9E-36 267.8 26.9 335 55-433 29-387 (388)
47 3dyd_A Tyrosine aminotransfera 100.0 1.4E-31 4.8E-36 268.6 29.9 335 56-434 54-425 (427)
48 3ke3_A Putative serine-pyruvat 100.0 3.8E-32 1.3E-36 268.4 25.1 335 69-434 9-377 (379)
49 3kax_A Aminotransferase, class 100.0 8.3E-32 2.8E-36 265.9 27.4 332 56-430 24-382 (383)
50 3mad_A Sphingosine-1-phosphate 100.0 9.4E-31 3.2E-35 268.8 35.1 317 99-445 137-488 (514)
51 2z61_A Probable aspartate amin 100.0 7.5E-32 2.6E-36 265.3 24.9 322 55-431 28-369 (370)
52 3h14_A Aminotransferase, class 100.0 1.3E-31 4.4E-36 265.6 26.6 335 55-438 30-387 (391)
53 1b5p_A Protein (aspartate amin 100.0 7.9E-32 2.7E-36 266.7 24.9 327 56-431 31-383 (385)
54 2o0r_A RV0858C (N-succinyldiam 100.0 7.7E-32 2.6E-36 269.1 24.9 351 55-438 24-401 (411)
55 3a2b_A Serine palmitoyltransfe 100.0 2.6E-31 8.9E-36 264.0 28.3 332 57-433 44-392 (398)
56 3nra_A Aspartate aminotransfer 100.0 2.9E-32 9.7E-37 271.6 21.4 335 57-434 40-406 (407)
57 2fnu_A Aminotransferase; prote 100.0 1.1E-30 3.9E-35 257.0 32.3 338 66-434 8-373 (375)
58 1fc4_A 2-amino-3-ketobutyrate 100.0 4.1E-31 1.4E-35 262.8 29.1 332 57-434 44-398 (401)
59 2z67_A O-phosphoseryl-tRNA(SEC 100.0 1.1E-32 3.7E-37 278.8 17.9 341 50-430 73-455 (456)
60 3mc6_A Sphingosine-1-phosphate 100.0 5.7E-31 1.9E-35 269.4 30.4 337 69-436 76-440 (497)
61 3p1t_A Putative histidinol-pho 100.0 9E-31 3.1E-35 254.0 30.2 315 54-431 14-335 (337)
62 1xi9_A Putative transaminase; 100.0 1.3E-31 4.4E-36 267.1 24.7 332 55-433 37-403 (406)
63 2qma_A Diaminobutyrate-pyruvat 100.0 8.1E-31 2.8E-35 268.1 31.2 348 55-432 98-495 (497)
64 3ftb_A Histidinol-phosphate am 100.0 8.6E-31 2.9E-35 256.6 30.1 319 55-431 25-359 (361)
65 1svv_A Threonine aldolase; str 100.0 1.1E-31 3.7E-36 262.5 23.3 325 57-433 14-358 (359)
66 3g0t_A Putative aminotransfera 100.0 4.9E-31 1.7E-35 265.3 28.5 341 55-432 43-436 (437)
67 3tqx_A 2-amino-3-ketobutyrate 100.0 2.3E-31 7.8E-36 264.2 25.7 332 58-433 43-396 (399)
68 3fdb_A Beta C-S lyase, putativ 100.0 1.9E-31 6.6E-36 262.8 24.8 328 55-432 22-375 (377)
69 3hdo_A Histidinol-phosphate am 100.0 9.3E-31 3.2E-35 256.6 29.1 317 55-431 25-353 (360)
70 3l8a_A METC, putative aminotra 100.0 5.9E-31 2E-35 263.6 27.9 334 55-431 60-420 (421)
71 1rv3_A Serine hydroxymethyltra 100.0 5.3E-32 1.8E-36 275.5 20.2 341 56-432 44-430 (483)
72 1o4s_A Aspartate aminotransfer 100.0 1.4E-31 4.9E-36 265.2 22.7 324 55-431 40-387 (389)
73 2x5d_A Probable aminotransfera 100.0 2.6E-31 8.9E-36 265.4 24.7 341 55-441 36-406 (412)
74 2jis_A Cysteine sulfinic acid 100.0 1.4E-30 4.9E-35 267.3 30.3 353 56-432 107-514 (515)
75 2gb3_A Aspartate aminotransfer 100.0 5.9E-31 2E-35 262.5 26.3 335 55-436 42-405 (409)
76 2zyj_A Alpha-aminodipate amino 100.0 2.2E-31 7.5E-36 264.5 22.8 339 55-434 31-394 (397)
77 1u08_A Hypothetical aminotrans 100.0 4E-30 1.4E-34 254.4 31.0 331 56-428 30-385 (386)
78 2fq6_A Cystathionine beta-lyas 100.0 3.7E-31 1.3E-35 263.4 23.6 308 93-428 74-413 (415)
79 1bw0_A TAT, protein (tyrosine 100.0 2.1E-30 7.3E-35 259.0 29.2 335 56-434 33-414 (416)
80 1bs0_A Protein (8-amino-7-oxon 100.0 2.3E-30 7.7E-35 256.0 28.5 328 57-429 38-383 (384)
81 2rfv_A Methionine gamma-lyase; 100.0 4.1E-31 1.4E-35 262.7 23.2 340 57-429 26-396 (398)
82 1yiz_A Kynurenine aminotransfe 100.0 1.5E-30 5E-35 261.3 27.1 339 56-431 37-427 (429)
83 1c7n_A Cystalysin; transferase 100.0 2E-30 6.9E-35 257.6 27.2 337 57-435 32-395 (399)
84 1vp4_A Aminotransferase, putat 100.0 6.4E-31 2.2E-35 263.6 23.6 342 56-438 43-423 (425)
85 1gc0_A Methionine gamma-lyase; 100.0 1.7E-30 5.7E-35 258.3 26.4 337 60-429 30-397 (398)
86 3aow_A Putative uncharacterize 100.0 2.2E-30 7.4E-35 261.4 27.5 338 56-434 76-446 (448)
87 3ele_A Amino transferase; RER0 100.0 3.5E-30 1.2E-34 255.8 28.6 333 56-434 35-397 (398)
88 2dou_A Probable N-succinyldiam 100.0 1.1E-30 3.8E-35 257.5 24.5 328 56-430 25-375 (376)
89 1lc5_A COBD, L-threonine-O-3-p 100.0 5.6E-30 1.9E-34 251.4 29.4 322 57-434 25-361 (364)
90 1qgn_A Protein (cystathionine 100.0 2.1E-30 7.2E-35 259.7 26.6 309 92-432 105-444 (445)
91 2fyf_A PSAT, phosphoserine ami 100.0 1.4E-30 5E-35 258.8 25.3 334 57-432 39-397 (398)
92 2zc0_A Alanine glyoxylate tran 100.0 1.1E-30 3.9E-35 260.1 24.1 336 57-433 35-404 (407)
93 3jtx_A Aminotransferase; NP_28 100.0 6.8E-30 2.3E-34 253.5 28.9 336 55-430 29-395 (396)
94 3fvs_A Kynurenine--oxoglutarat 100.0 1.5E-30 5.1E-35 260.5 24.4 338 56-432 28-421 (422)
95 3cq5_A Histidinol-phosphate am 100.0 1.6E-29 5.3E-34 248.7 31.1 317 59-431 33-366 (369)
96 1d2f_A MALY protein; aminotran 100.0 6.9E-30 2.4E-34 253.1 28.7 332 56-433 28-389 (390)
97 3frk_A QDTB; aminotransferase, 100.0 1.7E-31 5.7E-36 263.1 15.9 335 68-432 14-367 (373)
98 2cb1_A O-acetyl homoserine sul 100.0 1.7E-29 5.8E-34 252.2 30.2 309 96-428 51-411 (412)
99 2o1b_A Aminotransferase, class 100.0 2.6E-30 8.7E-35 257.5 23.8 329 56-432 47-402 (404)
100 1wyu_B Glycine dehydrogenase s 100.0 2.6E-29 8.9E-34 255.3 31.5 345 57-432 67-440 (474)
101 3kki_A CAI-1 autoinducer synth 100.0 1.7E-29 5.7E-34 252.0 29.4 326 60-432 61-403 (409)
102 2okj_A Glutamate decarboxylase 100.0 3.6E-29 1.2E-33 256.3 32.4 350 56-433 91-502 (504)
103 3b8x_A WBDK, pyridoxamine 5-ph 100.0 4.7E-30 1.6E-34 254.4 23.9 335 65-426 9-389 (390)
104 1b9h_A AHBA synthase, protein 100.0 6E-30 2.1E-34 253.3 24.7 334 68-432 14-387 (388)
105 1fg7_A Histidinol phosphate am 100.0 3.1E-29 1E-33 245.5 28.8 280 103-428 60-353 (356)
106 3uwc_A Nucleotide-sugar aminot 100.0 4.7E-30 1.6E-34 252.7 23.1 342 61-432 9-370 (374)
107 3ezs_A Aminotransferase ASPB; 100.0 5.9E-30 2E-34 252.2 23.5 327 56-432 23-374 (376)
108 3if2_A Aminotransferase; YP_26 100.0 3.1E-30 1.1E-34 260.0 21.5 354 56-435 31-442 (444)
109 3e2y_A Kynurenine-oxoglutarate 100.0 1.6E-29 5.3E-34 252.1 26.0 331 55-428 22-408 (410)
110 1n8p_A Cystathionine gamma-lya 100.0 2.4E-30 8.1E-35 256.6 19.8 307 93-429 47-391 (393)
111 1js3_A DDC;, DOPA decarboxylas 100.0 1.5E-28 5.3E-33 250.6 32.8 347 57-435 73-476 (486)
112 1v72_A Aldolase; PLP-dependent 100.0 9.1E-30 3.1E-34 248.6 22.5 326 56-435 7-355 (356)
113 3qhx_A Cystathionine gamma-syn 100.0 1.5E-29 5E-34 250.9 24.1 306 93-426 58-391 (392)
114 2vi8_A Serine hydroxymethyltra 100.0 3.1E-30 1.1E-34 256.7 19.1 343 60-434 26-388 (405)
115 3qgu_A LL-diaminopimelate amin 100.0 4.2E-29 1.4E-33 252.2 27.3 338 55-433 68-440 (449)
116 1wyu_A Glycine dehydrogenase ( 100.0 9.6E-29 3.3E-33 248.8 29.8 300 96-430 103-437 (438)
117 3op7_A Aminotransferase class 100.0 9.3E-30 3.2E-34 250.7 21.9 294 102-434 64-372 (375)
118 3b46_A Aminotransferase BNA3; 100.0 3.1E-29 1E-33 253.1 26.0 333 55-428 56-442 (447)
119 2bwn_A 5-aminolevulinate synth 100.0 3.6E-29 1.2E-33 248.9 26.0 323 69-433 61-400 (401)
120 3piu_A 1-aminocyclopropane-1-c 100.0 1.8E-29 6.2E-34 253.8 24.1 343 54-434 36-433 (435)
121 1pff_A Methionine gamma-lyase; 100.0 9.6E-30 3.3E-34 246.4 20.5 296 105-429 2-330 (331)
122 3k40_A Aromatic-L-amino-acid d 100.0 3E-28 1E-32 247.1 31.4 345 56-434 72-472 (475)
123 1o69_A Aminotransferase; struc 100.0 1.9E-29 6.6E-34 250.3 21.9 330 68-431 9-385 (394)
124 3vp6_A Glutamate decarboxylase 100.0 4.6E-28 1.6E-32 247.9 32.3 348 56-433 94-505 (511)
125 2c81_A Glutamine-2-deoxy-scyll 100.0 2.4E-29 8.1E-34 251.7 21.0 348 66-433 11-414 (418)
126 2oga_A Transaminase; PLP-depen 100.0 6E-29 2.1E-33 247.2 23.1 342 60-434 32-397 (399)
127 4e1o_A HDC, histidine decarbox 100.0 1.1E-27 3.8E-32 243.6 32.7 344 57-434 78-479 (481)
128 3ruy_A Ornithine aminotransfer 100.0 4.3E-28 1.5E-32 240.3 28.9 321 56-430 34-391 (392)
129 3fkd_A L-threonine-O-3-phospha 100.0 2.2E-28 7.6E-33 238.6 26.4 314 56-432 15-341 (350)
130 3nyt_A Aminotransferase WBPE; 100.0 3.6E-30 1.2E-34 253.1 13.7 339 60-429 4-360 (367)
131 3dr4_A Putative perosamine syn 100.0 1.4E-29 4.7E-34 251.1 17.8 343 57-430 23-390 (391)
132 1iay_A ACC synthase 2, 1-amino 100.0 4.8E-29 1.6E-33 250.2 21.8 339 56-432 36-426 (428)
133 2a7v_A Serine hydroxymethyltra 100.0 1.4E-28 4.8E-33 248.3 24.9 340 60-433 57-441 (490)
134 1mdo_A ARNB aminotransferase; 100.0 8.6E-28 3E-32 238.1 29.1 335 67-432 16-385 (393)
135 3ju7_A Putative PLP-dependent 100.0 1.8E-29 6.2E-34 248.7 16.4 336 68-432 13-374 (377)
136 2eh6_A Acoat, acetylornithine 100.0 2.3E-27 7.7E-32 233.6 31.3 318 56-429 26-374 (375)
137 3ez1_A Aminotransferase MOCR f 100.0 1.2E-28 4.1E-33 246.9 22.5 339 56-434 25-416 (423)
138 3ndn_A O-succinylhomoserine su 100.0 7.5E-28 2.6E-32 239.8 28.1 306 93-430 73-413 (414)
139 3g7q_A Valine-pyruvate aminotr 100.0 9.7E-29 3.3E-33 246.9 21.6 350 56-435 31-415 (417)
140 2r2n_A Kynurenine/alpha-aminoa 100.0 1.8E-27 6E-32 238.6 30.6 299 101-433 82-424 (425)
141 1jg8_A L-ALLO-threonine aldola 100.0 1E-28 3.5E-33 240.6 20.7 320 57-432 4-345 (347)
142 3ei9_A LL-diaminopimelate amin 100.0 6.8E-28 2.3E-32 242.1 27.1 332 56-432 56-427 (432)
143 1s0a_A Adenosylmethionine-8-am 100.0 2.6E-27 9E-32 237.6 31.3 338 56-434 41-425 (429)
144 1uu1_A Histidinol-phosphate am 100.0 3.5E-28 1.2E-32 235.9 24.0 305 56-429 19-334 (335)
145 3asa_A LL-diaminopimelate amin 100.0 4E-28 1.4E-32 241.3 24.5 332 55-433 32-393 (400)
146 1e5e_A MGL, methionine gamma-l 100.0 3.5E-28 1.2E-32 241.9 23.9 334 62-433 29-395 (404)
147 1cs1_A CGS, protein (cystathio 100.0 2.6E-27 8.9E-32 234.3 28.8 305 96-429 47-383 (386)
148 2x5f_A Aspartate_tyrosine_phen 100.0 5.4E-29 1.8E-33 250.0 16.8 334 56-433 47-429 (430)
149 3bb8_A CDP-4-keto-6-deoxy-D-gl 100.0 4.6E-28 1.6E-32 243.7 23.1 336 66-431 38-434 (437)
150 3n0l_A Serine hydroxymethyltra 100.0 2.8E-28 9.6E-33 243.5 20.8 341 59-433 28-389 (417)
151 2ctz_A O-acetyl-L-homoserine s 100.0 1.1E-26 3.9E-31 232.2 32.1 307 99-430 56-420 (421)
152 3tcm_A Alanine aminotransferas 100.0 4E-27 1.4E-31 240.6 29.0 330 68-435 106-496 (500)
153 3cog_A Cystathionine gamma-lya 100.0 7.7E-28 2.6E-32 239.2 22.0 299 101-429 67-398 (403)
154 3ppl_A Aspartate aminotransfer 100.0 3.1E-28 1.1E-32 244.2 19.0 302 101-434 78-421 (427)
155 3acz_A Methionine gamma-lyase; 100.0 1.4E-27 4.8E-32 236.4 23.3 303 94-430 52-386 (389)
156 2dkj_A Serine hydroxymethyltra 100.0 7.4E-28 2.5E-32 239.6 20.0 340 57-432 24-387 (407)
157 2po3_A 4-dehydrase; external a 100.0 3.2E-26 1.1E-30 229.4 31.7 345 61-436 21-389 (424)
158 3d6k_A Putative aminotransfera 100.0 1.4E-27 4.9E-32 239.0 21.5 341 56-434 32-419 (422)
159 4adb_A Succinylornithine trans 100.0 3.6E-27 1.2E-31 234.7 23.9 329 56-435 37-402 (406)
160 3gbx_A Serine hydroxymethyltra 100.0 4.3E-28 1.5E-32 242.3 17.0 339 63-434 36-397 (420)
161 3rq1_A Aminotransferase class 100.0 1.8E-27 6.2E-32 237.9 21.5 321 62-434 50-416 (418)
162 1vef_A Acetylornithine/acetyl- 100.0 3.7E-26 1.3E-30 226.6 30.3 318 56-430 43-394 (395)
163 1ibj_A CBL, cystathionine beta 100.0 1.4E-27 4.8E-32 240.9 19.5 301 100-432 132-461 (464)
164 3ihj_A Alanine aminotransferas 100.0 2E-26 6.9E-31 235.1 28.0 329 69-435 102-495 (498)
165 2x3l_A ORN/Lys/Arg decarboxyla 100.0 1.6E-27 5.5E-32 240.0 19.2 281 101-433 57-353 (446)
166 3ri6_A O-acetylhomoserine sulf 100.0 1E-26 3.4E-31 232.3 24.7 312 94-430 75-429 (430)
167 3nx3_A Acoat, acetylornithine 100.0 2E-26 6.8E-31 228.6 26.8 325 56-432 34-394 (395)
168 3fsl_A Aromatic-amino-acid ami 99.9 1.2E-27 4.1E-32 237.4 16.5 318 59-429 35-396 (397)
169 2ord_A Acoat, acetylornithine 99.9 1.3E-25 4.4E-30 222.9 30.7 321 56-432 38-396 (397)
170 4f4e_A Aromatic-amino-acid ami 99.9 2.9E-27 1E-31 236.6 18.2 319 59-430 58-419 (420)
171 1c4k_A Protein (ornithine deca 99.9 1.7E-26 5.7E-31 243.1 24.7 311 101-444 173-577 (730)
172 7aat_A Aspartate aminotransfer 99.9 7.6E-27 2.6E-31 232.1 19.3 324 57-430 35-400 (401)
173 3t18_A Aminotransferase class 99.9 5.6E-27 1.9E-31 234.0 18.0 320 60-434 47-411 (413)
174 2eo5_A 419AA long hypothetical 99.9 6.3E-25 2.2E-29 219.6 32.4 323 56-433 40-418 (419)
175 2aeu_A Hypothetical protein MJ 99.9 3.2E-26 1.1E-30 225.4 22.4 309 66-434 39-372 (374)
176 3h7f_A Serine hydroxymethyltra 99.9 2.1E-26 7.1E-31 232.2 21.5 341 57-432 46-413 (447)
177 1sff_A 4-aminobutyrate aminotr 99.9 4.3E-25 1.5E-29 221.1 30.7 327 57-434 40-425 (426)
178 1z7d_A Ornithine aminotransfer 99.9 1.2E-24 4.1E-29 218.4 32.9 327 56-434 63-430 (433)
179 1ax4_A Tryptophanase; tryptoph 99.9 1.7E-26 6E-31 234.1 19.3 345 57-435 42-443 (467)
180 3meb_A Aspartate aminotransfer 99.9 3E-26 1E-30 231.2 20.8 324 57-432 56-443 (448)
181 2pb2_A Acetylornithine/succiny 99.9 9.3E-25 3.2E-29 218.4 30.7 326 56-433 55-418 (420)
182 3ecd_A Serine hydroxymethyltra 99.9 1.7E-25 5.8E-30 223.8 24.9 338 63-433 38-397 (425)
183 3a8u_X Omega-amino acid--pyruv 99.9 2E-25 6.9E-30 225.2 25.6 341 56-433 48-447 (449)
184 2ez2_A Beta-tyrosinase, tyrosi 99.9 1.2E-25 4E-30 227.4 23.3 337 56-434 40-432 (456)
185 2ay1_A Aroat, aromatic amino a 99.9 7.6E-27 2.6E-31 231.4 13.6 313 66-429 42-392 (394)
186 2oat_A Ornithine aminotransfer 99.9 9.8E-25 3.4E-29 219.4 28.8 327 55-432 73-438 (439)
187 3nmy_A Xometc, cystathionine g 99.9 2.4E-25 8.1E-30 220.7 23.9 305 94-431 60-397 (400)
188 3i4j_A Aminotransferase, class 99.9 2.8E-25 9.6E-30 222.9 24.7 344 56-433 27-428 (430)
189 1ajs_A Aspartate aminotransfer 99.9 2.1E-26 7.3E-31 229.6 16.5 321 62-432 42-410 (412)
190 1yaa_A Aspartate aminotransfer 99.9 7.6E-27 2.6E-31 232.9 12.7 319 59-432 38-410 (412)
191 3b1d_A Betac-S lyase; HET: PLP 99.9 1.4E-28 4.9E-33 243.9 0.0 328 57-431 32-391 (392)
192 2q7w_A Aspartate aminotransfer 99.9 1.6E-26 5.5E-31 229.2 14.6 319 60-429 36-395 (396)
193 3dxv_A Alpha-amino-epsilon-cap 99.9 3.5E-24 1.2E-28 215.5 31.2 336 56-435 41-427 (439)
194 3f6t_A Aspartate aminotransfer 99.9 5.4E-26 1.8E-30 233.8 18.3 338 59-435 106-527 (533)
195 2cjg_A L-lysine-epsilon aminot 99.9 2.4E-24 8.4E-29 217.2 28.0 335 56-433 52-448 (449)
196 1zod_A DGD, 2,2-dialkylglycine 99.9 2.1E-24 7.2E-29 216.7 26.8 337 56-433 41-432 (433)
197 3dod_A Adenosylmethionine-8-am 99.9 9.9E-24 3.4E-28 212.8 31.7 341 56-435 42-445 (448)
198 2oqx_A Tryptophanase; lyase, p 99.9 1.2E-25 4.1E-30 228.0 17.1 341 57-435 40-444 (467)
199 3n5m_A Adenosylmethionine-8-am 99.9 1.7E-23 5.8E-28 211.3 32.3 342 56-432 47-451 (452)
200 3jzl_A Putative cystathionine 99.9 1.5E-24 5.2E-29 214.8 23.7 269 71-359 32-323 (409)
201 3lws_A Aromatic amino acid bet 99.9 6.5E-25 2.2E-29 214.6 20.7 289 101-430 47-356 (357)
202 2vyc_A Biodegradative arginine 99.9 1.5E-24 5.2E-29 230.3 25.0 303 101-441 205-613 (755)
203 3tfu_A Adenosylmethionine-8-am 99.9 3.1E-24 1.1E-28 216.7 25.6 331 59-434 76-454 (457)
204 4a6r_A Omega transaminase; tra 99.9 1.3E-23 4.3E-28 212.6 29.3 335 55-435 47-451 (459)
205 3gju_A Putative aminotransfera 99.9 2.6E-23 8.8E-28 210.4 31.6 337 56-434 49-457 (460)
206 3i5t_A Aminotransferase; pyrid 99.9 1.2E-23 4E-28 213.6 28.7 354 55-448 51-469 (476)
207 3hmu_A Aminotransferase, class 99.9 1.2E-23 4.2E-28 213.1 27.2 336 55-435 52-454 (472)
208 3pj0_A LMO0305 protein; struct 99.9 4E-25 1.4E-29 216.2 15.6 311 69-429 27-358 (359)
209 3bwn_A AT1G70560, L-tryptophan 99.9 3.2E-25 1.1E-29 219.7 14.8 280 104-432 71-386 (391)
210 3l44_A Glutamate-1-semialdehyd 99.9 3.1E-23 1E-27 208.3 28.5 324 55-435 52-432 (434)
211 3i16_A Aluminum resistance pro 99.9 8.1E-24 2.8E-28 210.3 22.2 268 71-359 46-340 (427)
212 4ffc_A 4-aminobutyrate aminotr 99.9 3.5E-22 1.2E-26 201.6 33.6 334 56-434 62-450 (453)
213 3hvy_A Cystathionine beta-lyas 99.9 3.9E-23 1.3E-27 205.4 23.5 266 71-359 47-340 (427)
214 3oks_A 4-aminobutyrate transam 99.9 3.7E-22 1.3E-26 201.3 29.4 334 55-432 58-450 (451)
215 3fq8_A Glutamate-1-semialdehyd 99.9 1.6E-23 5.5E-28 209.9 19.2 323 56-432 50-426 (427)
216 4e77_A Glutamate-1-semialdehyd 99.9 3.6E-22 1.2E-26 200.2 28.4 324 55-432 50-428 (429)
217 2hox_A ALLIIN lyase 1; cystein 99.9 3.9E-24 1.3E-28 214.1 12.6 324 55-431 55-423 (427)
218 4eu1_A Mitochondrial aspartate 99.9 2.8E-23 9.4E-28 206.9 18.4 283 102-430 80-408 (409)
219 2epj_A Glutamate-1-semialdehyd 99.9 3.8E-22 1.3E-26 200.3 25.3 321 56-433 54-431 (434)
220 2cy8_A D-phgat, D-phenylglycin 99.9 9.3E-22 3.2E-26 198.6 28.0 329 56-440 55-442 (453)
221 3k28_A Glutamate-1-semialdehyd 99.9 6.7E-23 2.3E-27 205.5 18.6 324 55-433 50-427 (429)
222 1ohv_A 4-aminobutyrate aminotr 99.9 1E-21 3.4E-26 199.1 24.5 332 55-433 60-471 (472)
223 2zy4_A L-aspartate beta-decarb 99.9 2.2E-22 7.5E-27 207.0 18.7 343 59-434 107-523 (546)
224 3ht4_A Aluminum resistance pro 99.9 4.9E-22 1.7E-26 198.4 20.0 271 71-359 38-329 (431)
225 3n75_A LDC, lysine decarboxyla 99.9 2.7E-21 9.2E-26 201.9 25.2 322 101-441 195-568 (715)
226 2e7u_A Glutamate-1-semialdehyd 99.9 6.5E-21 2.2E-25 190.7 23.9 318 56-429 50-423 (424)
227 3k7y_A Aspartate aminotransfer 99.9 6.5E-21 2.2E-25 189.0 22.6 323 57-432 30-404 (405)
228 3bc8_A O-phosphoseryl-tRNA(SEC 99.9 8.6E-21 2.9E-25 187.2 22.2 316 100-434 97-444 (450)
229 3ou5_A Serine hydroxymethyltra 99.9 1.2E-19 4E-24 175.8 27.5 334 63-431 60-439 (490)
230 3hl2_A O-phosphoseryl-tRNA(SEC 99.9 2.6E-21 9E-26 188.1 15.3 309 106-435 122-463 (501)
231 4h51_A Aspartate aminotransfer 99.9 1.1E-20 3.8E-25 187.4 18.3 329 59-434 53-418 (420)
232 4ao9_A Beta-phenylalanine amin 99.8 1E-19 3.5E-24 181.3 21.0 326 55-439 84-452 (454)
233 4atq_A 4-aminobutyrate transam 99.8 1.3E-17 4.6E-22 166.8 33.1 337 55-432 61-454 (456)
234 2yky_A Beta-transaminase; tran 99.7 4E-22 1.4E-26 200.1 0.0 327 57-436 99-463 (465)
235 4e3q_A Pyruvate transaminase; 99.8 1.6E-17 5.6E-22 166.8 28.6 341 55-433 64-468 (473)
236 4a0g_A Adenosylmethionine-8-am 99.7 1.1E-15 3.8E-20 163.4 23.9 337 59-433 381-828 (831)
237 1tks_A 3,4-dihydroxy-2-butanon 56.4 19 0.00065 30.8 5.6 41 191-231 154-194 (204)
238 3kts_A Glycerol uptake operon 54.3 11 0.00039 31.9 4.0 51 185-240 18-70 (192)
239 3i6i_A Putative leucoanthocyan 52.5 1.1E+02 0.0039 27.9 11.3 99 120-231 12-116 (346)
240 3ezx_A MMCP 1, monomethylamine 50.9 92 0.0031 26.7 9.5 116 102-226 42-173 (215)
241 4g81_D Putative hexonate dehyd 48.3 1.1E+02 0.0038 27.0 9.8 74 113-194 4-78 (255)
242 1qyd_A Pinoresinol-lariciresin 44.6 1.2E+02 0.004 27.2 9.8 59 168-231 54-113 (313)
243 2gjh_A Designed protein; oblig 42.8 32 0.0011 21.6 3.6 30 404-434 2-31 (62)
244 3ecs_A Translation initiation 39.7 2.2E+02 0.0077 26.0 12.3 103 118-232 121-229 (315)
245 3sho_A Transcriptional regulat 39.1 1.4E+02 0.0049 24.3 8.8 54 170-230 65-118 (187)
246 2r6j_A Eugenol synthase 1; phe 38.3 1.6E+02 0.0054 26.4 9.6 96 121-231 14-112 (318)
247 2yxb_A Coenzyme B12-dependent 37.4 61 0.0021 26.4 5.8 57 163-225 39-96 (161)
248 2yva_A DNAA initiator-associat 37.1 1E+02 0.0036 25.5 7.6 38 189-230 103-140 (196)
249 1y80_A Predicted cobalamin bin 37.0 1.3E+02 0.0043 25.5 8.2 66 163-234 109-179 (210)
250 1snn_A DHBP synthase, 3,4-dihy 35.0 62 0.0021 28.1 5.6 37 194-231 176-212 (227)
251 3mio_A DHBP synthase, 3,4-dihy 34.3 68 0.0023 27.4 5.6 37 195-231 157-194 (206)
252 3c1o_A Eugenol synthase; pheny 34.1 2.1E+02 0.0072 25.5 9.8 55 168-231 55-110 (321)
253 3bzy_B ESCU; auto cleavage pro 33.8 26 0.00088 25.2 2.5 20 215-234 29-48 (83)
254 1g57_A DHBP synthase, 3,4-dihy 32.6 76 0.0026 27.4 5.7 37 194-231 165-201 (217)
255 3r1i_A Short-chain type dehydr 32.0 2.6E+02 0.0089 24.6 9.8 74 113-194 27-101 (276)
256 4gqr_A Pancreatic alpha-amylas 31.4 20 0.00069 35.0 2.2 89 144-235 7-99 (496)
257 3jug_A Beta-mannanase; TIM-bar 31.0 58 0.002 30.4 5.2 52 162-236 59-110 (345)
258 1qyc_A Phenylcoumaran benzylic 30.3 1.8E+02 0.0063 25.7 8.6 55 168-231 55-110 (308)
259 3ju3_A Probable 2-oxoacid ferr 29.7 45 0.0015 25.6 3.5 48 157-204 26-73 (118)
260 4ibo_A Gluconate dehydrogenase 29.0 2.7E+02 0.0094 24.3 9.4 73 114-194 22-95 (271)
261 4f6o_A Metacaspase-1; rossmann 28.9 87 0.003 29.3 5.9 58 102-160 76-142 (350)
262 1qys_A TOP7; alpha-beta, novel 28.3 75 0.0026 22.1 4.0 30 404-434 46-75 (106)
263 1x92_A APC5045, phosphoheptose 27.9 2E+02 0.0067 23.8 7.8 40 187-230 105-144 (199)
264 1wv2_A Thiazole moeity, thiazo 27.7 2.2E+02 0.0077 25.2 8.0 67 160-233 125-194 (265)
265 4fn4_A Short chain dehydrogena 27.6 1.1E+02 0.0037 27.1 6.2 67 121-194 9-76 (254)
266 2i2x_B MTAC, methyltransferase 27.3 2.4E+02 0.0081 24.8 8.5 57 163-225 144-201 (258)
267 2vt1_B Surface presentation of 27.2 38 0.0013 24.9 2.5 20 215-234 29-48 (93)
268 3t7y_A YOP proteins translocat 26.7 35 0.0012 25.4 2.2 20 215-234 44-63 (97)
269 2wc7_A Alpha amylase, catalyti 26.7 47 0.0016 32.6 4.0 68 159-235 58-125 (488)
270 2z1k_A (NEO)pullulanase; hydro 26.2 54 0.0018 32.0 4.3 69 158-235 51-119 (475)
271 1zco_A 2-dehydro-3-deoxyphosph 26.2 1.2E+02 0.0042 26.9 6.3 56 185-240 142-206 (262)
272 1g94_A Alpha-amylase; beta-alp 25.8 30 0.001 33.7 2.3 75 152-235 9-87 (448)
273 3c01_E Surface presentation of 25.3 38 0.0013 25.2 2.2 20 215-234 29-48 (98)
274 3vc3_A Beta-cyanoalnine syntha 25.1 32 0.0011 32.2 2.2 54 120-179 89-142 (344)
275 4ggi_A UDP-2,3-diacylglucosami 24.8 68 0.0023 29.0 4.3 56 171-230 214-275 (283)
276 3tfo_A Putative 3-oxoacyl-(acy 24.6 3.1E+02 0.011 23.9 8.8 67 121-194 6-73 (264)
277 4af8_A Metacaspase MCA2; hydro 24.3 1E+02 0.0035 29.0 5.5 54 102-157 115-179 (367)
278 2whl_A Beta-mannanase, baman5; 24.2 86 0.003 28.1 5.1 50 162-234 36-85 (294)
279 1vs1_A 3-deoxy-7-phosphoheptul 23.8 1.4E+02 0.0047 26.8 6.1 124 100-240 88-221 (276)
280 4du5_A PFKB; structural genomi 23.8 2.6E+02 0.009 25.3 8.5 20 215-234 173-192 (336)
281 2ioj_A Hypothetical protein AF 23.7 2.6E+02 0.0088 21.7 8.5 39 187-231 64-103 (139)
282 3umo_A 6-phosphofructokinase i 23.2 3.6E+02 0.012 23.9 9.2 20 215-234 149-168 (309)
283 3bh4_A Alpha-amylase; calcium, 22.9 36 0.0012 33.3 2.3 31 205-235 71-101 (483)
284 3ayr_A Endoglucanase; TIM barr 22.7 1.3E+02 0.0044 28.2 6.1 60 161-235 66-125 (376)
285 2abq_A Fructose 1-phosphate ki 22.6 3.5E+02 0.012 23.9 9.0 51 183-234 107-163 (306)
286 3jy6_A Transcriptional regulat 22.3 2.4E+02 0.0082 24.4 7.7 58 166-231 33-90 (276)
287 1lwj_A 4-alpha-glucanotransfer 22.2 37 0.0013 32.8 2.2 72 155-235 21-92 (441)
288 3mfq_A TROA, high-affinity zin 22.1 1.5E+02 0.005 26.6 6.1 74 147-230 164-242 (282)
289 1k4i_A 3,4-dihydroxy-2-butanon 22.1 1.4E+02 0.0048 26.0 5.5 37 194-231 165-212 (233)
290 1h1y_A D-ribulose-5-phosphate 22.1 3.4E+02 0.011 23.1 8.3 84 147-233 89-180 (228)
291 3lyl_A 3-oxoacyl-(acyl-carrier 21.9 2.4E+02 0.0083 24.0 7.5 67 121-194 7-74 (247)
292 1hvx_A Alpha-amylase; hydrolas 21.7 40 0.0014 33.4 2.3 31 205-235 74-104 (515)
293 1ud2_A Amylase, alpha-amylase; 21.6 40 0.0014 33.0 2.3 31 205-235 73-103 (480)
294 1wpc_A Glucan 1,4-alpha-maltoh 21.6 40 0.0014 33.0 2.3 31 205-235 75-105 (485)
295 1mxg_A Alpha amylase; hyperthe 21.4 41 0.0014 32.5 2.3 31 205-235 79-109 (435)
296 3sju_A Keto reductase; short-c 21.4 3.5E+02 0.012 23.6 8.6 66 121-194 27-93 (279)
297 1vb5_A Translation initiation 20.7 4.5E+02 0.015 23.3 14.5 117 102-231 95-216 (276)
298 3tjr_A Short chain dehydrogena 20.2 4.5E+02 0.016 23.2 9.7 66 121-194 34-100 (301)
299 1jae_A Alpha-amylase; glycosid 20.1 40 0.0014 33.0 1.9 86 145-235 8-97 (471)
300 3tb6_A Arabinose metabolism tr 20.1 2.9E+02 0.0099 24.0 7.8 79 150-230 21-103 (298)
No 1
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=100.00 E-value=3e-49 Score=396.54 Aligned_cols=404 Identities=58% Similarity=1.014 Sum_probs=354.2
Q ss_pred ccCCCcEEecCCCCCCCCHHHHHHHHHHHh--hccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741 53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATES 130 (457)
Q Consensus 53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a 130 (457)
..+.+.+|||+++++++++++++++.+.+. ..+++|++..+.+++...+...++++++++++|+++++++||+|||+|
T Consensus 18 ~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a 97 (423)
T 3lvm_A 18 RAMKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATES 97 (423)
T ss_dssp --CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHH
T ss_pred cccCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHH
Confidence 445788999999999999999999999988 778888875677788888899999999999999988899999999999
Q ss_pred HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccc
Q 040741 131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIG 210 (457)
Q Consensus 131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G 210 (457)
++++++++...+.++|++|+++.++|+++..++..++..|++++.++.+.++.+|+++|++++++++++|++++++||+|
T Consensus 98 ~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 177 (423)
T 3lvm_A 98 DNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIG 177 (423)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTC
T ss_pred HHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCc
Confidence 99999998855545899999999999999998887777799999999998899999999999999999999999999999
Q ss_pred cccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccc
Q 040741 211 VIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERG 290 (457)
Q Consensus 211 ~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~ 290 (457)
.+.|+++|.++|++||+++|+|++++.+..+++....++|++++|+||++|+.|+|+++++++...++.+...++++...
T Consensus 178 ~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~~~~~~~~ 257 (423)
T 3lvm_A 178 VVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERG 257 (423)
T ss_dssp BBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTT
T ss_pred cccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCCeEEEEEeccccCCCCccccCCccccc
Confidence 99999999999999999999999999998888887788999999999999998899999999888888887777776666
Q ss_pred cccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc
Q 040741 291 IRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL 370 (457)
Q Consensus 291 ~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 370 (457)
+..++++...+.++.++++.....+++..++.+++++++.+.|++ ++++.+..++....+.++.+.+.+.+...+...|
T Consensus 258 ~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 336 (423)
T 3lvm_A 258 MRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSFNYVEGESLIMAL 336 (423)
T ss_dssp TCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEEESCSTTBCTTEEEEEETTSCHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCCeEEEEeCCCCHHHHHHHH
Confidence 778899999999998898887777899999999999999999988 8899998876666677888888777778888888
Q ss_pred cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHHHHHhcCCcc
Q 040741 371 KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIK 450 (457)
Q Consensus 371 ~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
..+.+.+|..|.+....+.+++..+|+......+.|||+++..++++|+++++++|+++++++++.+|+|...+++-|.+
T Consensus 337 ~~i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 416 (423)
T 3lvm_A 337 KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLN 416 (423)
T ss_dssp TTEECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTSSHHHHHTTSCCCSC
T ss_pred hhheeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhccCccchhhhcccccC
Confidence 55999999999988888889999999876555689999999999999999999999999999999999999999999999
Q ss_pred ccccccC
Q 040741 451 QIQWAQH 457 (457)
Q Consensus 451 ~~~~~~~ 457 (457)
.++|.-|
T Consensus 417 ~~~~~~~ 423 (423)
T 3lvm_A 417 SIEWAHH 423 (423)
T ss_dssp C------
T ss_pred chhhhcC
Confidence 9999765
No 2
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=2.5e-47 Score=376.57 Aligned_cols=379 Identities=41% Similarity=0.755 Sum_probs=328.5
Q ss_pred cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHH
Q 040741 58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKG 137 (457)
Q Consensus 58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~ 137 (457)
++|||+++++++++++++++.+.+...+++|++ .+.+++...+...++++++++++|++++++++++|+|+|+.+++++
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~ 79 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIG 79 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHH
T ss_pred CEeecCCCcCCCCHHHHHHHHHHHHhhcCCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHH
Confidence 479999999999999999999999888888886 6777777889999999999999999888899999999999999998
Q ss_pred hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHH
Q 040741 138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE 217 (457)
Q Consensus 138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~ 217 (457)
+...+.++|++|+++.++|+++..++..+...|++++.++.+.++.+|+++|++++++++++|++++++||+|.+.|+++
T Consensus 80 ~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~ 159 (382)
T 4hvk_A 80 YAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEE 159 (382)
T ss_dssp HHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHH
T ss_pred hhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHH
Confidence 87433368999999999999999998888778999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCC
Q 040741 218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLP 297 (457)
Q Consensus 218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 297 (457)
|.++|++||+ +|+|++|+.+..+++....++|++++|+||++|+.|+|+++++++. ++.+...++....++..++++
T Consensus 160 i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 236 (382)
T 4hvk_A 160 ISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSEN 236 (382)
T ss_dssp HHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCC
T ss_pred HHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCceEEEEEcCcc--CcCcccccCCCcCccccCCcC
Confidence 9999999999 9999999999887777666789999999999999899999999865 566666666666777888999
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEe
Q 040741 298 TPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAV 375 (457)
Q Consensus 298 ~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~ 375 (457)
...+.++.++++...+++++..++.+++++++.+.|.+ ++++.+..++....++++.+.+++.+..++...| +||.+
T Consensus 237 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v 315 (382)
T 4hvk_A 237 VPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQA 315 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEE
Confidence 99999998898877778899999999999999999998 8999998766555567788888777777777777 69999
Q ss_pred cccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHH
Q 040741 376 SSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYE 441 (457)
Q Consensus 376 ~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~ 441 (457)
.+|..|.+....|++++..+|.++....++|||+++..+++||+++++++|+++++++++.+|+|+
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~~ 381 (382)
T 4hvk_A 316 STGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSPLYR 381 (382)
T ss_dssp BCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred eeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999888778888899999876555689999999999999999999999999999999999886
No 3
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=100.00 E-value=3.8e-46 Score=368.58 Aligned_cols=379 Identities=41% Similarity=0.751 Sum_probs=321.7
Q ss_pred cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHH
Q 040741 58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKG 137 (457)
Q Consensus 58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~ 137 (457)
++|||+++++++++++++++.+.+...+++|++ .+..+....+...++++++++++|++++++++|+|||+|+.+++.+
T Consensus 1 ~~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~ 79 (382)
T 4eb5_A 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIG 79 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHH
T ss_pred CeeeccCCCCCCCHHHHHHHHHHHHhccCCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHH
Confidence 379999999999999999999999877778775 4555556678899999999999999888899999999999999999
Q ss_pred hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHH
Q 040741 138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE 217 (457)
Q Consensus 138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~ 217 (457)
+...+.++|++|+++.++|+++...+..+...|++++.++.+.++.+|++++++++++++++|++++++||+|.+.|+++
T Consensus 80 l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~ 159 (382)
T 4eb5_A 80 YAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEE 159 (382)
T ss_dssp HHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHH
T ss_pred HHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHH
Confidence 87333368999999999999999888876667999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCC
Q 040741 218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLP 297 (457)
Q Consensus 218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 297 (457)
|.++|++||++ |+|++|++|..++++..++.|++++|+||++|+.|+|+++++++. ++.+...++++...+..++++
T Consensus 160 i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~ 236 (382)
T 4eb5_A 160 ISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSEN 236 (382)
T ss_dssp HHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCC
T ss_pred HHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCceEEEEEcccc--ccCceecCCCccccccCCCcc
Confidence 99999999999 999999988776665555789999999999999899999998763 344444444444456677888
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEe
Q 040741 298 TPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAV 375 (457)
Q Consensus 298 ~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~ 375 (457)
...+.++.++++.+.++++++.++.+++++++.+.|++ ++++.+..++....++++.+.+++.+..++...| +||.+
T Consensus 237 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v 315 (382)
T 4eb5_A 237 VPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQA 315 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-CCCeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEE
Confidence 88888888888887777889999999999999999999 8899887654333356677777766667777766 69999
Q ss_pred cccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHH
Q 040741 376 SSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYE 441 (457)
Q Consensus 376 ~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~ 441 (457)
.+|..|.+....+++++..+|.++....+.|||+++..++++|+++++++|+++++++++++|.|.
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 381 (382)
T 4eb5_A 316 STGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSPLYR 381 (382)
T ss_dssp BCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTCTTC-
T ss_pred eccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999998887777888888888764444589999999989999999999999999999999998875
No 4
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=100.00 E-value=2e-43 Score=349.13 Aligned_cols=372 Identities=42% Similarity=0.661 Sum_probs=304.1
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741 59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV 138 (457)
Q Consensus 59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~ 138 (457)
+|||+++++++++++++++.+.+...+++|++ .+.+++...+...++++++++++|++++++++|+|||+|+.++++++
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~ 81 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTV 81 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhh
Confidence 89999999999999999999999877777775 56677777889999999999999998888999999999999999988
Q ss_pred hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHH
Q 040741 139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEI 218 (457)
Q Consensus 139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i 218 (457)
.....++|++|+++.++|+++...+..+...|.+++.++.+.++.+|+++|++++++++++|++++++||+|.+.|+++|
T Consensus 82 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i 161 (384)
T 1eg5_A 82 AETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDV 161 (384)
T ss_dssp HHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHH
T ss_pred hhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHH
Confidence 73212589999999999999988887666679999999998888899999999999999999999999999999999999
Q ss_pred HHHHHhcC--CcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCC
Q 040741 219 GQICKEFK--IPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296 (457)
Q Consensus 219 ~~l~~~~~--v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 296 (457)
.++|++|| +++|+|++|++|..++++..++.|++++|+||++|+.|+|+++++++. ++.+...+++.......+++
T Consensus 162 ~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 239 (384)
T 1eg5_A 162 TRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQ 239 (384)
T ss_dssp HHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCCCSBCSSCTTTTTBCSCC
T ss_pred HHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCceEEEEEcCCC--ccccccccCcccccccCCCC
Confidence 99999999 999999999988777777666899999999999999889999998764 33444433333233456688
Q ss_pred ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeE
Q 040741 297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVA 374 (457)
Q Consensus 297 ~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~ 374 (457)
+...+.++..+++...+.+++..++++++++++.+.|.+ +++.+..++....+..+.+.++..+..++...| +||.
T Consensus 240 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 317 (384)
T 1eg5_A 240 NVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIY 317 (384)
T ss_dssp CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT--TTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEE
T ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--CCeEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeE
Confidence 888888888888876667889999999999999999998 688887654444566777777655666777666 6999
Q ss_pred ecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741 375 VSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 375 ~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~ 435 (457)
+.+|..|.+....++++++.+|+++....++|||+++..++++|+++++++|++++++++.
T Consensus 318 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 318 VSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp CBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred EeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999888766666777888888764334589999999889999999999999999987754
No 5
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=100.00 E-value=2.4e-44 Score=358.09 Aligned_cols=376 Identities=42% Similarity=0.631 Sum_probs=303.8
Q ss_pred ccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741 53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN 132 (457)
Q Consensus 53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~ 132 (457)
.+..+.+|||+++++++++++++++.+.+...+++|++ .+.+++...+...++++++++++|++++++++|+|+|+|++
T Consensus 16 ~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~ 94 (400)
T 3vax_A 16 PRGSHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNN 94 (400)
T ss_dssp ------CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHH
T ss_pred cccCCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHH
Confidence 45577899999999999999999999999888888876 56667777788999999999999998889999999999999
Q ss_pred HHHHHhhhhhcCCCC-EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741 133 VSIKGVMHFYKDKKR-HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211 (457)
Q Consensus 133 ~al~~~~~~~~~~g~-~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~ 211 (457)
++++++..+..++|| +|+++.++|+++...+..+...|++++.++.+.++.+|++++++++++++++|++++++||+|.
T Consensus 95 ~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~ 174 (400)
T 3vax_A 95 IALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGV 174 (400)
T ss_dssp HHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCB
T ss_pred HHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCcee
Confidence 999988643336799 9999999999999988887777999999999988999999999999999999999999999999
Q ss_pred ccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEE-EecCCC----ccccccccCCc
Q 040741 212 IQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALY-MRRRPR----IRVEPLINGGG 286 (457)
Q Consensus 212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~-~~~~~~----~~~~~~~~~~~ 286 (457)
+.|+++|.++|++||+++|+|++|+.+..+.++... +|++++|+||++|+.|+|+++ ++++.. ..+.+...++.
T Consensus 175 ~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (400)
T 3vax_A 175 IQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGG 253 (400)
T ss_dssp BCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSSCEEEEECBCSSSTTCBCCCCCSSCSSC
T ss_pred eCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCceEEEEEecchhccccccccCceecCCC
Confidence 999999999999999999999999999888777766 899999999998988999999 887322 34556666666
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHH
Q 040741 287 QERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESL 366 (457)
Q Consensus 287 ~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (457)
...++..++++...+.++.++++...+++++..++.+++++++.+.|+ .+++.+..+.....++++.+.+++.+..++
T Consensus 254 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 331 (400)
T 3vax_A 254 QERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA--STSFQVNGDQDHVVPHILNLSFEDVDAEAF 331 (400)
T ss_dssp TGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT--TTTCEECSCTTSBCTTEEEEECTTCCHHHH
T ss_pred ceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC--CCCEEEeCCcccCCCCEEEEEeCCCCHHHH
Confidence 666677889999999999899988877889999999999999999998 489998876655556677777776666666
Q ss_pred Hhcc-cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 040741 367 LMGL-KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 367 ~~~l-~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t~edid~~~~~l~~~~~~ 432 (457)
...| +||.+.+|..|.+....|++++..+|+.+....++|||++ +..++++|+++++++|++++++
T Consensus 332 ~~~L~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 332 LVTLKDLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp HHHHHHHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred HHHHhcCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 5555 7899999998987777788889999887655568999999 9889999999999999988754
No 6
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=6.6e-41 Score=333.60 Aligned_cols=363 Identities=24% Similarity=0.371 Sum_probs=299.3
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTSGATESNNVSI 135 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g~T~a~~~al 135 (457)
+.+|||++++++.++++.+++.+.+....++|++..+.+++...+...++++.+++++|. +++++++|+|+|+|+++++
T Consensus 23 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~ 102 (406)
T 1kmj_A 23 PLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVA 102 (406)
T ss_dssp ECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHH
T ss_pred ceEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHH
Confidence 579999999999999999999999988777887656666777778899999999999998 6778999999999999999
Q ss_pred HHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741 136 KGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP 214 (457)
Q Consensus 136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~ 214 (457)
+++.....++|++|+++.++|++...... .++..|++++.++.+.++.+|++++++++++++++|++++++||+|.+.|
T Consensus 103 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~ 182 (406)
T 1kmj_A 103 NSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENP 182 (406)
T ss_dssp HHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCC
T ss_pred HHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCC
Confidence 99831101789999999999998765433 23445999999999888889999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCcc-------
Q 040741 215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ------- 287 (457)
Q Consensus 215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~------- 287 (457)
+++|.++|++||+++|+|++|+.|..++++...++|++++|+||.+|+.|+|+++++++..+++.+...+++.
T Consensus 183 l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (406)
T 1kmj_A 183 LAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLS 262 (406)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHCCCSSCSTTSEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCCcEEEEEeHHHHhhcCCcccCCCceeecccc
Confidence 9999999999999999999999987766655567899999999988998899999998777777665544431
Q ss_pred --------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE
Q 040741 288 --------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF 358 (457)
Q Consensus 288 --------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (457)
..++..+++++..++++.++++.+.+ ++++..++.+++++++.+.|++ ++++.+..+. ..++++.+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~--~~~~~~~~~~ 339 (406)
T 1kmj_A 263 EGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQ--NRLGVIAFNL 339 (406)
T ss_dssp TEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-STTEEEESCT--TCCSEEEEEE
T ss_pred cccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCC--CcCCEEEEEE
Confidence 12345678888888888788888765 5788999999999999999999 8899887653 1256666666
Q ss_pred ccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 359 AYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 359 ~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
++.+..++...| +||.+.+|..|.+ ..+..+|. .+++||+++..++++|+++++++|+++++.+
T Consensus 340 ~~~~~~~~~~~l~~~gi~v~~g~~~~~------~~~~~~g~-----~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 340 GKHHAYDVGSFLDNYGIAVRTGHHCAM------PLMAYYNV-----PAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp TTCCHHHHHHHHHHTTEECEEECTTCH------HHHHHTTC-----SCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhCCcEEEeccccch------HHHHhcCC-----CCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 655566676666 6999999887753 22333443 2799999999999999999999999998765
No 7
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=8.1e-40 Score=327.34 Aligned_cols=367 Identities=23% Similarity=0.362 Sum_probs=294.2
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTSGATESNNVSI 135 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g~T~a~~~al 135 (457)
+.+||+.+.+++.++++.+++.+.+....++|++..+.++....+...++++.+++++|. +++++++|+|||+|+.+++
T Consensus 28 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~ 107 (420)
T 1t3i_A 28 PLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVA 107 (420)
T ss_dssp ECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHH
T ss_pred ceEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHH
Confidence 479999999999999999999999987777776544555544457889999999999999 6778999999999999999
Q ss_pred HHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741 136 KGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP 214 (457)
Q Consensus 136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~ 214 (457)
+++.....++|++|+++.++|++...... .++..|++++.++.+.++.+|++++++++++++++|++++++||+|.+.|
T Consensus 108 ~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~ 187 (420)
T 1t3i_A 108 YSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNP 187 (420)
T ss_dssp HHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCC
T ss_pred HHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCC
Confidence 99821001789999999999999643222 22334999999999888889999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCcc-------
Q 040741 215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ------- 287 (457)
Q Consensus 215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~------- 287 (457)
+++|.++|++||+++|+|++|+.|..++++...+.|++++|+||++|+.|+|+++++++..+++.+...+++.
T Consensus 188 l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (420)
T 1t3i_A 188 AEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFD 267 (420)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSS
T ss_pred HHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCceEEEEEchHHHhhcCceecCCCcccccccc
Confidence 9999999999999999999999988766665667899999999988988899999998776666665544432
Q ss_pred -------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC--cccceEEEE
Q 040741 288 -------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER--RYIGNLNLS 357 (457)
Q Consensus 288 -------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~ 357 (457)
..++..++++..+++++..+++.+.+ +++++.++.+++++++.+.|++ ++++.+..+... ..++++.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~ 346 (420)
T 1t3i_A 268 HFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRLYGPNPKHGDRAALASFN 346 (420)
T ss_dssp CEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-CTTEEEESCCGGGSCBCSEEEEE
T ss_pred ccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeCCCccccccCCEEEEE
Confidence 12344578888888888778887765 5788999999999999999999 889988765321 135666666
Q ss_pred EccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741 358 FAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 358 ~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~ 435 (457)
++..+..++...| +||.+.+|..|.. ..+..+|. .+++||+++..++++|+++++++|+++++++++
T Consensus 347 ~~~~~~~~~~~~l~~~gi~v~~~~~~~~------~~~~~~g~-----~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 347 VAGLHASDVATMVDQDGIAIRSGHHCTQ------PLHRLFDA-----SGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp ETTBCHHHHHHHHHTTTEECBCSCTTCH------HHHHHTTC-----CCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred ECCCCHHHHHHHHHHCCeEEeeccccch------HHHHhcCC-----CCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 7655556666666 6999998877643 12233443 379999999989999999999999999887643
No 8
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.8e-40 Score=328.57 Aligned_cols=357 Identities=15% Similarity=0.224 Sum_probs=292.0
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK 136 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~ 136 (457)
+.+|||+++++++++++++++.+.+...+++|.+ .+.++....+...++++++++++|+++++++||+|+|+++.++++
T Consensus 26 ~~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~ 104 (406)
T 3cai_A 26 GWVHFDAPAGMLIPDSVATTVSTAFRRSGASTVG-AHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAE 104 (406)
T ss_dssp SCEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCS-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHH
T ss_pred CeEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHH
Confidence 4899999999999999999999999876667643 455666667889999999999999987889999999999999998
Q ss_pred HhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCC-CCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741 137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP 214 (457)
Q Consensus 137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~ 214 (457)
++.... ++|++|+++.++|+++...+..+ +..|++++.++.+ .++.+|+++|++++++++++|++++++||+|.+.|
T Consensus 105 ~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~ 183 (406)
T 3cai_A 105 ASSSRA-GLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTD 183 (406)
T ss_dssp HTGGGG-BTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCC
T ss_pred HHhhcc-CCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCC
Confidence 872101 78999999999999988777653 3359999999988 77889999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCce-EEEEecCCCcccccccc--CCcccccc
Q 040741 215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVG-ALYMRRRPRIRVEPLIN--GGGQERGI 291 (457)
Q Consensus 215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G-~l~~~~~~~~~~~~~~~--~~~~~~~~ 291 (457)
+++|.++|+++|+++|+|++|+.|..++++..+++|++++|+||++||. +| +++++++..+++.+... ++.....+
T Consensus 184 l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g~~-~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (406)
T 3cai_A 184 LRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPP-IGAMVFRDPSVMNSFGSVSTNPYATGPARL 262 (406)
T ss_dssp CHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTSCS-CEEEEESCHHHHHTSCCCCSCTTCCGGGGG
T ss_pred HHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcCCC-cCeEEEEehHHHhhcCCcccCCCCCccccc
Confidence 9999999999999999999999988777666667999999999988876 78 99998876666655432 22233445
Q ss_pred ccCCCChhHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741 292 RSGTLPTPLIVGFGSACEIAKK---------------EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356 (457)
Q Consensus 292 ~~~t~~~~~~~al~~al~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (457)
..++++...+.++.++++...+ .++++.++.+++++++.+.|++ ++++.+..+.... .+++.+
T Consensus 263 ~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~-~~~~~~ 340 (406)
T 3cai_A 263 EIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRS-LPLVMLIGRPEAQ-IPVVSF 340 (406)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CTTEEECCCCSSB-CSEEEE
T ss_pred cCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCcccc-CCEEEE
Confidence 6788999988888888887765 3688889999999999999999 8899887654333 346677
Q ss_pred EEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741 357 SFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK 428 (457)
Q Consensus 357 ~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~ 428 (457)
.+++.+..++...| +||.+.+|. +..++..+|... ..+.|||+++..++++|+++++++|++
T Consensus 341 ~~~~~~~~~~~~~L~~~gi~v~~g~--------~~~~~~~~g~~~--~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 341 AVHKVPADRVVQRLADNGILAIANT--------GSRVLDVLGVND--VGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp EETTBCHHHHHHHHHHTTEECEECC--------SCHHHHHHTTTT--TTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred EECCcCHHHHHHHHHHCCcEEecCC--------hHHHHHHcCCCC--CCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 77665666676666 689888775 223555666542 247999999999999999999999875
No 9
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=100.00 E-value=4.4e-40 Score=330.97 Aligned_cols=379 Identities=36% Similarity=0.593 Sum_probs=304.0
Q ss_pred ccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741 53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN 132 (457)
Q Consensus 53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~ 132 (457)
....+.+|||+++++++++++++++.+.+...+++|++ .+..+....+...++++++++++|+++++++||+|+|+|++
T Consensus 14 ~~~~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~ 92 (432)
T 3a9z_A 14 SPPNRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNN 92 (432)
T ss_dssp ----CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHH
T ss_pred CCCCCcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCcc-CcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHH
Confidence 33467899999999999999999999999877778774 45555566688899999999999998888999999999999
Q ss_pred HHHHHhhhhhc----CCC-------------CEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCCC-CCCCCHHHHHHhc
Q 040741 133 VSIKGVMHFYK----DKK-------------RHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVGA-DGIVNLDELRAAI 193 (457)
Q Consensus 133 ~al~~~~~~~~----~~g-------------~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~~-~~~~d~~~le~~i 193 (457)
++++++...+. ++| ++|+++..+|+++..++..+ +..|.+++.++.+. ++.+|+++|++++
T Consensus 93 ~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i 172 (432)
T 3a9z_A 93 LVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAV 172 (432)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTC
T ss_pred HHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhc
Confidence 99998852110 255 47778888888888777655 44699999999875 7789999999999
Q ss_pred CCCceEEEEeccccccccccChHHHHHHHHhcC----------CcEEEehhhhcCCCcccCCCCcccEEEeccccccCCC
Q 040741 194 RPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK----------IPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPK 263 (457)
Q Consensus 194 ~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~----------v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~ 263 (457)
++++++|++++++||+|.+.|+++|.++|++++ +++|+|++|+.|..++++...++|++++|+||++|+.
T Consensus 173 ~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g~~ 252 (432)
T 3a9z_A 173 RPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR 252 (432)
T ss_dssp CTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTCCS
T ss_pred cCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcCCc
Confidence 999999999999999999999999999999999 9999999999887766655557899999999998987
Q ss_pred CceEEEEecCC-CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCe--
Q 040741 264 GVGALYMRRRP-RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGV-- 340 (457)
Q Consensus 264 G~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-- 340 (457)
+|+++++++. ..++.+...++++...+..++++...+.++.++++...+++++..++.+++++++.+.|.+ ++++
T Consensus 253 -~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~ 330 (432)
T 3a9z_A 253 -IGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEA-EFGKRI 330 (432)
T ss_dssp -CEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGE
T ss_pred -ceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-ccCCcE
Confidence 8999999875 4556666666655556677899999888888899887777889999999999999999988 5553
Q ss_pred EEeCCC--CCcccceEEEEEccc--cchHHHhcccCeEecccCccCCCC-CChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741 341 VVNGSM--ERRYIGNLNLSFAYV--EGESLLMGLKEVAVSSGSACTSAS-LEPSYVLRALGVDEDMAHTSIRFGIGRFTT 415 (457)
Q Consensus 341 ~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~l~~i~~~~g~~~~~~~-~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t 415 (457)
.+.++. ....+.++.|.+... +...+...+.++.+..|..|.+.. ..+...+...|+......++|||+++.+++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t 410 (432)
T 3a9z_A 331 HLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTT 410 (432)
T ss_dssp EESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCC
T ss_pred EEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCC
Confidence 333431 223455777777642 455666677899999998886532 234456777777543345899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040741 416 EAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 416 ~edid~~~~~l~~~~~~~~ 434 (457)
++|+++++++|++++++++
T Consensus 411 ~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 411 RAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988765
No 10
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=100.00 E-value=6.1e-41 Score=329.49 Aligned_cols=340 Identities=13% Similarity=0.077 Sum_probs=257.9
Q ss_pred cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCC--ccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChHHHHHH
Q 040741 58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSR--THLFGWESEVAVETARSQIADLIGASP-KEIIF-TSGATESNNV 133 (457)
Q Consensus 58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~-t~g~T~a~~~ 133 (457)
.+||++++++++|++|+++|.+++.+.++||.+. .+..+..+.+.++++|+.+++++|+++ .+++| |+|||+++++
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ 106 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAG 106 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHH
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence 3799999999999999999999998888887652 223456667899999999999999964 46898 6999999999
Q ss_pred HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCC-CCHHHHHHhcCCCceEEEEeccccccc
Q 040741 134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGI-VNLDELRAAIRPDTGLISVMAVNNEIG 210 (457)
Q Consensus 134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~-~d~~~le~~i~~~t~li~i~~~~~~~G 210 (457)
++.++. ++++++++....+.+. .....+++.| ++++++++ .+|. +|+++++.+++++|++|++++..|.+|
T Consensus 107 ai~~l~----~~gd~v~~~~~~~~~~-~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG 180 (386)
T 3qm2_A 107 VPLNLL----GDKTTADYVDAGYWAA-SAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDG 180 (386)
T ss_dssp HHHHHC----TTCCEEEEEESSHHHH-HHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTT
T ss_pred HHHhcc----CCCCeEEEEeCCHHHH-HHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcC
Confidence 999987 7889887655555554 3445556779 99999988 5665 788999999999999999999999999
Q ss_pred cc-cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCcccccccc-----C
Q 040741 211 VI-QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLIN-----G 284 (457)
Q Consensus 211 ~~-~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~-----~ 284 (457)
.+ .|+++|. +|+++++|++|++|..++|+.+++ ++++|.||++||+|+|+++++++..+++.+... +
T Consensus 181 ~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G~g~l~v~~~~~~~~~~~~p~~~~~~ 253 (386)
T 3qm2_A 181 IAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSILDYT 253 (386)
T ss_dssp EECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTTEEEEEEEGGGCSCCCTTSCGGGCHH
T ss_pred EecCchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCccEEEEECHHHHhhhcccCCcHHHHH
Confidence 96 8999885 799999999999999999998865 677999998899999999999998776664322 1
Q ss_pred CccccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc--
Q 040741 285 GGQERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-- 360 (457)
Q Consensus 285 ~~~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 360 (457)
..++.+.+++|+|+..++++.+|++++.+ +++++.++.+++++++++.|.+ ++.+....+++.+.+.++.|.+++
T Consensus 254 ~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~rs~~iv~f~~~~~~ 332 (386)
T 3qm2_A 254 VLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDN-SDFYRNDVAQANRSRMNVPFQLADNT 332 (386)
T ss_dssp HHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT-CSSEECCBCGGGBCSSEEEEEESSGG
T ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-CCCcccCCCHHHcCceEEEEECCCcc
Confidence 12345567789999999999999999876 4999999999999999999998 632243334445566788888874
Q ss_pred ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
.+ ..+...| +||.+..|..|. +.+|+++..++|+||||+++++|+++.++.
T Consensus 333 ~~-~~~~~~L~~~gI~~~~g~~~~---------------------~~iRiS~~~~~t~edId~l~~~l~~~~~~~ 385 (386)
T 3qm2_A 333 LD-KVFLEESFAAGLHALKGHRVV---------------------GGMRASIYNAMPIEGVKALTDFMIDFERRH 385 (386)
T ss_dssp GH-HHHHHHHHHTTEECCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cc-HHHHHHHHHCCCEEeCCCCCc---------------------CeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 33 4555555 688887775542 469999999999999999999999988763
No 11
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=316.81 Aligned_cols=342 Identities=15% Similarity=0.069 Sum_probs=278.4
Q ss_pred EecCCCCCCCCHHHHHHHHHHHhhccCCCCCC--ccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChHHHHHHHH
Q 040741 60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSR--THLFGWESEVAVETARSQIADLIGASP-KEIIF-TSGATESNNVSI 135 (457)
Q Consensus 60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~-t~g~T~a~~~al 135 (457)
-||.+++.++|++|+++|.+++.+.++||.+. .+..+..+.+.++++|+.+++++|+++ .+++| |+|||+++++++
T Consensus 15 ~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~ 94 (377)
T 3e77_A 15 TENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVP 94 (377)
T ss_dssp CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHH
Confidence 46677788999999999999998888887653 134466778999999999999999975 46999 589999999999
Q ss_pred HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccCh
Q 040741 136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM 215 (457)
Q Consensus 136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l 215 (457)
.++... ++||++++....|.+. ...+.++..|+.+++++++.++..++++++.+++++|++|++++..|.+|.+.|+
T Consensus 95 ~~l~~~--~~Gd~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi 171 (377)
T 3e77_A 95 LNLIGL--KAGRCADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF 171 (377)
T ss_dssp HHHGGG--STTCEEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS
T ss_pred HhccCC--CCCCeEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchh
Confidence 998731 2489998877777665 4456677789988888887666678888888899999999999999999999998
Q ss_pred HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCC-----ccccc
Q 040741 216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGG-----GQERG 290 (457)
Q Consensus 216 ~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~-----~~~~~ 290 (457)
+|+++|+++++|++|++|..++++.+++ ++++|.||++||+|+|++++++++.+++.+..... ..+.+
T Consensus 172 -----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~ 244 (377)
T 3e77_A 172 -----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNS 244 (377)
T ss_dssp -----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGGGCHHHHHTTT
T ss_pred -----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCccEEEEEcHHHHhhccCCCCchhhHHHHhhcC
Confidence 5788999999999999999999998765 68899999889999999999999887766433221 12234
Q ss_pred cccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeC-CCCCcccceEEEEEccccc-h--
Q 040741 291 IRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNG-SMERRYIGNLNLSFAYVEG-E-- 364 (457)
Q Consensus 291 ~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~-- 364 (457)
.+++|+++..++++.+|++++.+ +++++.++.+++++++++.|.+ ++++.+.. +++.+.+.++.|.++++++ .
T Consensus 245 ~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~-~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~ 323 (377)
T 3e77_A 245 SLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDN-SQGFYVCPVEPQNRSKMNIPFRIGNAKGDDAL 323 (377)
T ss_dssp TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-STTSEECCSCGGGBCSSEEEEEESSTTCCHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-cCCceecCCCHHHcCCcEEEEEcCCCCCchhH
Confidence 56789999999999999998876 4999999999999999999999 88888643 2334556678888887544 2
Q ss_pred --HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 365 --SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 365 --~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
.++..+ +||.+.+|..+ .+.+|+|+..++|+||||+++++|++++++.
T Consensus 324 ~~~~l~~l~~~Gi~~~~g~~~---------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 324 EKRFLDKALELNMLSLKGHRS---------------------VGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp HHHHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEeCCCCc---------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 344444 68887766421 1579999999999999999999999998763
No 12
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=100.00 E-value=2.8e-38 Score=313.54 Aligned_cols=346 Identities=14% Similarity=0.124 Sum_probs=278.2
Q ss_pred ccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741 53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN 132 (457)
Q Consensus 53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~ 132 (457)
+..++.+|||++++.++++++++++.+.+.. + .++...+...++++++++++|++++++++|+|||+|+.
T Consensus 4 p~~~~~~yl~~~~~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~ 73 (392)
T 2z9v_A 4 PEHADPVITLTAGPVNAYPEVLRGLGRTVLY-----D-----YDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLE 73 (392)
T ss_dssp CTTSCCSEECSSSCCCCCHHHHHHTTSCCCC-----T-----TSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHH
T ss_pred ccCCCcceeecCCCcCCCHHHHHHHhccccc-----c-----ccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHH
Confidence 3456779999999999999999998877642 1 13345578889999999999998888999999999999
Q ss_pred HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc--CCCceEEEEeccccccc
Q 040741 133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAI--RPDTGLISVMAVNNEIG 210 (457)
Q Consensus 133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i--~~~t~li~i~~~~~~~G 210 (457)
++++++. ++|++|+++.++|++.. ....++..|++++.++.+.++.+|++++++++ .+++++|++++++||+|
T Consensus 74 ~~~~~~~----~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG 148 (392)
T 2z9v_A 74 AAAASLI----SPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSG 148 (392)
T ss_dssp HHHHHHC----CTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGT
T ss_pred HHHHHhc----CCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCc
Confidence 9999986 89999999999998874 33444555999999999888889999999999 46889999999999999
Q ss_pred cccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccccc------
Q 040741 211 VIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLIN------ 283 (457)
Q Consensus 211 ~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~------ 283 (457)
.+.|+++|.++|++||+++|+|++|+.|..++++..+++|++++|+|| ++|+.|+|+++++++..+++.+...
T Consensus 149 ~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~ 228 (392)
T 2z9v_A 149 TINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASM 228 (392)
T ss_dssp EECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSST
T ss_pred eeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCcee
Confidence 999999999999999999999999999888777766678999999999 6788899999999876555543211
Q ss_pred -C-----Cc-cccccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC-CcccceE
Q 040741 284 -G-----GG-QERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVVNGSME-RRYIGNL 354 (457)
Q Consensus 284 -~-----~~-~~~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~ 354 (457)
+ .+ +......++++...+.++.++++...+. +++..++.+++++++.+.|.+ + ++.+..++. .....++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~ 306 (392)
T 2z9v_A 229 LSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTA-M-GLSVWAASDSIASPTTT 306 (392)
T ss_dssp TCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSSSGGGBCTTEE
T ss_pred ccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCCccccCCceE
Confidence 0 00 1223456788888888888888887665 889999999999999999998 6 777665221 2235556
Q ss_pred EEEEc-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHHH
Q 040741 355 NLSFA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTTEAEVDRAIELTVKQ 429 (457)
Q Consensus 355 ~~~~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t~edid~~~~~l~~~ 429 (457)
.+.++ +.+..++...| + ||.+.+|..+. ..+.+||++ +..++++|+++++++|+++
T Consensus 307 ~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~-------------------~~~~lRi~~~~~~~~~~~i~~~~~~l~~~ 367 (392)
T 2z9v_A 307 AVRTPDGVDEKALRQAARARYGVVFSSGRGET-------------------LGKLTRIGHMGPTAQPIYAIAALTALGGA 367 (392)
T ss_dssp EEECCTTCCHHHHHHHHHHHHCEECEECCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHhcCCEEEecCCCCC-------------------CCCeEEEeCcccccCHHHHHHHHHHHHHH
Confidence 66664 45566777766 4 99988775321 237999996 4478999999999999999
Q ss_pred HHHHH
Q 040741 430 VEKLR 434 (457)
Q Consensus 430 ~~~~~ 434 (457)
+++++
T Consensus 368 ~~~~~ 372 (392)
T 2z9v_A 368 MNAAG 372 (392)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 98764
No 13
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=100.00 E-value=1.7e-36 Score=300.26 Aligned_cols=345 Identities=18% Similarity=0.299 Sum_probs=280.3
Q ss_pred ccCCCcEEecCCCCCCCCHHHHHHHHHHHhhcc-CCCCCCccchhhh-HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741 53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWE-SEVAVETARSQIADLIGASPKEIIFTSGATES 130 (457)
Q Consensus 53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~-~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a 130 (457)
+...+.+|||.++.++.++++.+++.+.+.... .++.+ +. .|. ..+...++++.+++++|++++++++|+|||+|
T Consensus 12 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~~-~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 88 (390)
T 1elu_A 12 PGLANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFS--IA-ANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 88 (390)
T ss_dssp GGGTTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSS--HH-HHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCCCCeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcc--hh-hHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence 334568999999988999999999999886532 12221 11 222 24678899999999999988889999999999
Q ss_pred HHHHHHHh-hhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEEEeccc
Q 040741 131 NNVSIKGV-MHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLISVMAVN 206 (457)
Q Consensus 131 ~~~al~~~-~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~i~~~~ 206 (457)
++++++++ . ++|++|+++.++|.++...+.. ++..|++++.++.+ .++.+|++++++++++++++|++++++
T Consensus 89 ~~~~~~~~~~----~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~ 164 (390)
T 1elu_A 89 CDIVLWGLDW----HQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLL 164 (390)
T ss_dssp HHHHHHHSCC----CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBC
T ss_pred HHHHHhCCCC----CCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccc
Confidence 99999998 5 7899999999999998775432 34459999999987 577899999999999999999999999
Q ss_pred cccccccChHHHHHHHH----hcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccc
Q 040741 207 NEIGVIQPMEEIGQICK----EFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPL 281 (457)
Q Consensus 207 ~~~G~~~~l~~i~~l~~----~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~ 281 (457)
||+|.+.|+++|.++|+ +||+++|+|++|+.|..++++...++|++++|+|| ++|+.|+|+++++++..+++.+.
T Consensus 165 nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~ 244 (390)
T 1elu_A 165 WNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPT 244 (390)
T ss_dssp TTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCC
T ss_pred cCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCCc
Confidence 99999999999999999 99999999999999988877767789999999999 78888999999998887777765
Q ss_pred ccCCccc---------------cccccCCCChhHHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeC
Q 040741 282 INGGGQE---------------RGIRSGTLPTPLIVGFGSACEIAKK-E-MDYDHKRITALHDRLLNGIKEKLDGVVVNG 344 (457)
Q Consensus 282 ~~~~~~~---------------~~~~~~t~~~~~~~al~~al~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 344 (457)
..|++.. ..+..++++...+.++.++++.+.+ + +++..++.+++++++.+.|.+ ++++.+..
T Consensus 245 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~ 323 (390)
T 1elu_A 245 YVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LPHVHCLA 323 (390)
T ss_dssp SCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-STTEEESC
T ss_pred cccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEec
Confidence 5544321 2345678888888888888887755 3 888999999999999999999 88998876
Q ss_pred CCCCcccceEEEEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHH
Q 040741 345 SMERRYIGNLNLSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDR 421 (457)
Q Consensus 345 ~~~~~~~~~~~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~ 421 (457)
+. ...++++.+.++ +.+..++...| +||.+.+|. ..++|||+++..++++|+++
T Consensus 324 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~----------------------~~~~iRis~~~~~~~~~i~~ 380 (390)
T 1elu_A 324 TS-APQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIA----------------------DPDCIRACCHYITDEEEINH 380 (390)
T ss_dssp SS-CCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEET----------------------TTTEEEEECCTTCCHHHHHH
T ss_pred Cc-cccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecC----------------------CCCeEEEecccCCCHHHHHH
Confidence 32 223566666664 34556676666 688887763 12799999998899999999
Q ss_pred HHHHHHH
Q 040741 422 AIELTVK 428 (457)
Q Consensus 422 ~~~~l~~ 428 (457)
++++|++
T Consensus 381 ~~~~l~~ 387 (390)
T 1elu_A 381 LLARLAD 387 (390)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9998875
No 14
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=1.7e-37 Score=303.15 Aligned_cols=331 Identities=13% Similarity=0.099 Sum_probs=270.7
Q ss_pred EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh
Q 040741 60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVM 139 (457)
Q Consensus 60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~ 139 (457)
|+.++++.++++++++++.+.+.. ..++...+...++++++++++|++++++++|+|||+|+.++++++.
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~ 72 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLH----------HRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF 72 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCC----------TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC
T ss_pred ccccCCCCCCCHHHHHHhccCCCC----------ccCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc
Confidence 788899999999999999887641 1233455678999999999999987789999999999999999987
Q ss_pred hhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHH
Q 040741 140 HFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIG 219 (457)
Q Consensus 140 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~ 219 (457)
++|++|+++.++|+++. ....++..|++++.++.+.++.+|++++++ +++++|++++++||+|.+.|+++|.
T Consensus 73 ----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~ 144 (352)
T 1iug_A 73 ----APGERVLVPVYGKFSER-FYEIALEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPALA 144 (352)
T ss_dssp ----CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHHHH
T ss_pred ----CCCCeEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHHHH
Confidence 89999999999999986 445556669999999998888899998877 6789999999999999999999999
Q ss_pred HHHHhc--CCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccc---------cccCCcc
Q 040741 220 QICKEF--KIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEP---------LINGGGQ 287 (457)
Q Consensus 220 ~l~~~~--~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~---------~~~~~~~ 287 (457)
++|++| |+++|+|++|++|..++++..+++|++++|+|| ++|+.|+|+++++++..+++.+ ... ..
T Consensus 145 ~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 222 (352)
T 1iug_A 145 RAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELK--AQ 222 (352)
T ss_dssp HHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHH--HH
T ss_pred HHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHh--hc
Confidence 999999 999999999999888777666678999999999 7888899999998875544332 000 01
Q ss_pred ccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc-cccchHH
Q 040741 288 ERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA-YVEGESL 366 (457)
Q Consensus 288 ~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 366 (457)
......++++...+.++.++++...+.+++..++++++++++.+.|++ + ++.+..+. ..+.++.+.++ +.+..++
T Consensus 223 ~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~--~~~~~~~~~~~~~~~~~~~ 298 (352)
T 1iug_A 223 KEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE-G-GLRPVPKR--FSPAVAAFYLPEGVPYARV 298 (352)
T ss_dssp TTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH-T-TCEESCSS--BCTTCEEEECCTTCCHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccccc--cCCeEEEEEcCCCCCHHHH
Confidence 123456788888888888888877666788999999999999999999 6 88876543 23556667765 4556677
Q ss_pred Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
...| +||.+.+|..+ ...+++||+++..++++|+++++++|+++++++
T Consensus 299 ~~~l~~~gi~v~~~~~~-------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 299 KEAFAQRGAVIAGGQGP-------------------LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp HHHHHTTTEECEECCGG-------------------GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEEeCCCc-------------------cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 7766 68988877522 123799999999889999999999999998765
No 15
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-36 Score=300.81 Aligned_cols=340 Identities=16% Similarity=0.234 Sum_probs=272.5
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATESNNVSI 135 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a~~~al 135 (457)
..+|||+.++.++++++.+++.+.+.. .++....+...++++.+++++|++ ++++++|+|||+|+.+++
T Consensus 19 ~~~~l~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~ 88 (386)
T 2dr1_A 19 PKYKLFTAGPVACFPEVLEIMKVQMFS----------HRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASI 88 (386)
T ss_dssp CCSEECCSSSCCCCHHHHHHTTSCCCC----------TTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHH
T ss_pred ccceeecCCCcCCcHHHHHHHhccccc----------ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHH
Confidence 357999999999999999998776532 122234578899999999999997 567999999999999999
Q ss_pred HHhhhhhcCCCCEEEEcCCCCcc--hHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc--CCCceEEEEecccccccc
Q 040741 136 KGVMHFYKDKKRHVITTQTEHKC--VLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAI--RPDTGLISVMAVNNEIGV 211 (457)
Q Consensus 136 ~~~~~~~~~~g~~vi~~~~~h~~--~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i--~~~t~li~i~~~~~~~G~ 211 (457)
.++. ++|++|+++.+.|++ +...++ ..|++++.++.+.++.+|+++|++++ .+++++|++++++||+|.
T Consensus 89 ~~l~----~~gd~vl~~~~~~~~~~~~~~~~---~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~ 161 (386)
T 2dr1_A 89 RNGV----SKGGKVLVTIIGAFGKRYKEVVE---SNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGV 161 (386)
T ss_dssp HHHS----CTTCEEEEEESSHHHHHHHHHHH---HTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTE
T ss_pred HHhh----cCCCeEEEEcCCchhHHHHHHHH---HhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcch
Confidence 9987 899999999999988 444444 45999999999888889999999999 578999999999999999
Q ss_pred ccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-CCCceEEEEecCCCccccccc-cCC----
Q 040741 212 IQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLI-NGG---- 285 (457)
Q Consensus 212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~-~~~---- 285 (457)
+.|+++|.++|++||+++|+|++|+.+..++++..+++|++++|+||.++ +.|+|+++++++..+++.+.. .++
T Consensus 162 ~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~ 241 (386)
T 2dr1_A 162 LNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDI 241 (386)
T ss_dssp ECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCH
T ss_pred hCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeH
Confidence 99999999999999999999999999887777777789999999999655 557999999987655553211 010
Q ss_pred -----ccc-cccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEE
Q 040741 286 -----GQE-RGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS 357 (457)
Q Consensus 286 -----~~~-~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 357 (457)
... .....++++...+.++..+++...+. +++..++.+++++++.+.|.+ + ++.+..+.....+.++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~ 319 (386)
T 2dr1_A 242 PLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVRE-I-GLDILAEPGHESPTITAVL 319 (386)
T ss_dssp HHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCTTCBCSSEEEEE
T ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-c-CCeeCcCccccCCceEEEE
Confidence 001 12445678888888888888887653 789999999999999999999 6 7776654332345566666
Q ss_pred Ec-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 358 FA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 358 ~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
++ +.+..++...| +||.+.+|..+. ..+++||+++.+++++|+++++++|++++++++
T Consensus 320 ~~~~~~~~~~~~~l~~~gi~v~~~~~~~-------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 320 TPPGIKGDEVYEAMRKRGFELAKGYGSV-------------------KEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp CCTTCCHHHHHHHHHHTTEECEECCGGG-------------------TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHCCeEEecCcccc-------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 65 34566676666 689888875321 237999999998999999999999999998764
No 16
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=100.00 E-value=5.2e-37 Score=304.43 Aligned_cols=345 Identities=18% Similarity=0.249 Sum_probs=276.6
Q ss_pred CCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHH
Q 040741 55 AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNNV 133 (457)
Q Consensus 55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~ 133 (457)
..+.+|+++.++.++++++++++.+.+... +.....+...++++++++++|++++ ++++|+|||+|+.+
T Consensus 16 ~~~~~~~~~~g~~~~~~~v~~a~~~~~~~~----------~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~ 85 (393)
T 2huf_A 16 VTPNKLLMGPGPSNAPQRVLDAMSRPILGH----------LHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEA 85 (393)
T ss_dssp CCCCCEECSSSCCCCCHHHHHHTTSCCCCT----------TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHH
T ss_pred CCCCeEEecCCCCCCCHHHHHHHHhhhccC----------CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHH
Confidence 345678999998899999999987765321 1223457889999999999999875 79999999999999
Q ss_pred HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccc
Q 040741 134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVI 212 (457)
Q Consensus 134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~ 212 (457)
+++++. ++|++|+++.+.|++.. ....++..|.+++.++.+.++.+|++++++++++ ++++|++++++||+|.+
T Consensus 86 ~~~~~~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~ 160 (393)
T 2huf_A 86 TLCNLL----EDGDVILIGHTGHWGDR-SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVL 160 (393)
T ss_dssp HHHHHC----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEE
T ss_pred HHHHHh----CCCCEEEEECCCcchHH-HHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCcccc
Confidence 999987 89999999999998853 3344455699999999988888999999999987 89999999999999999
Q ss_pred cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccc-------c--
Q 040741 213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPL-------I-- 282 (457)
Q Consensus 213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~-------~-- 282 (457)
.|+++|.++|++||+++|+|+++++|..++++..+++|++++|+|| ++|+.|+|+++++++..+++... .
T Consensus 161 ~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (393)
T 2huf_A 161 QGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWD 240 (393)
T ss_dssp CCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred CCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEc
Confidence 9999999999999999999999999888777777789999999999 57888999999987765554332 1
Q ss_pred -------cCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741 283 -------NGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL 354 (457)
Q Consensus 283 -------~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 354 (457)
.++.+..++..++++...+.++.++++...+ ++++..++.+++++++.+.|.+ + ++.+..+.....+.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~ 318 (393)
T 2huf_A 241 MSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQD-A-GFELYADPKDRLSTVT 318 (393)
T ss_dssp HHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCTTEE
T ss_pred hHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCccccCCcEE
Confidence 1111223456678999999988889988765 4888999999999999999999 6 7776654322234466
Q ss_pred EEEEc-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHHH
Q 040741 355 NLSFA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTTEAEVDRAIELTVKQ 429 (457)
Q Consensus 355 ~~~~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t~edid~~~~~l~~~ 429 (457)
.+.++ +.+..++...| + ||.+.+|..|. ..+++||++ +..++++++++++++|+++
T Consensus 319 ~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~-------------------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~ 379 (393)
T 2huf_A 319 TIKVPQGVDWLKAAQYAMKTYLVEISGGLGPT-------------------AGQVFRIGLMGQNATTERVDRVLQVFQEA 379 (393)
T ss_dssp EEECCTTCCHHHHHHHHHHHHCEECBCCCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHhCCEEEecCcccc-------------------cCCEEEEEcccCcCCHHHHHHHHHHHHHH
Confidence 66665 45566777766 3 89988876441 237999999 5446799999999999999
Q ss_pred HHHHHh
Q 040741 430 VEKLRE 435 (457)
Q Consensus 430 ~~~~~~ 435 (457)
+++++.
T Consensus 380 ~~~~~~ 385 (393)
T 2huf_A 380 VAAVKP 385 (393)
T ss_dssp HHHHCC
T ss_pred HHHcCC
Confidence 987753
No 17
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=100.00 E-value=2.2e-37 Score=301.51 Aligned_cols=332 Identities=15% Similarity=0.065 Sum_probs=264.4
Q ss_pred cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCc--cchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChHHHHHH
Q 040741 58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRT--HLFGWESEVAVETARSQIADLIGASP-KEIIF-TSGATESNNV 133 (457)
Q Consensus 58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~-t~g~T~a~~~ 133 (457)
..|+-+++++++|++|+++|.+++.+.++||.+.- +..+..+.+.++++|+.+++++|+++ .+++| |+|||+++++
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~ 84 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAM 84 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHH
Confidence 45788889999999999999999988777776521 22356777999999999999999964 47888 9999999999
Q ss_pred HHHHhhhhhcCCCC---EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCC--CCHHHHHHhcCCCceEEEEeccccc
Q 040741 134 SIKGVMHFYKDKKR---HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGI--VNLDELRAAIRPDTGLISVMAVNNE 208 (457)
Q Consensus 134 al~~~~~~~~~~g~---~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~--~d~~~le~~i~~~t~li~i~~~~~~ 208 (457)
++.++. +++ +|++...+|. ....++..|+++++++++.++. +++++ + |+++|++|++++..|.
T Consensus 85 ~~~~~~-----~~~~~~~i~~~~~~~~----~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~~~e~~ 152 (361)
T 3m5u_A 85 IPMNLA-----LNGVCEYANTGVWTKK----AIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYICSNNTI 152 (361)
T ss_dssp HHHHHC-----CSSCEEEEECSHHHHH----HHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEESEETT
T ss_pred HHHhcC-----CCCeEEEEeCCHHHHH----HHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEeCCCCC
Confidence 999886 233 3444443342 3344566699999999998774 56776 4 8999999999999999
Q ss_pred cccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccc----cccC
Q 040741 209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEP----LING 284 (457)
Q Consensus 209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~----~~~~ 284 (457)
+|.+.|. +++ +|+++++|++|++|..++++.+ +|++++|.||++||+|+|+++++++..+++.+ .+..
T Consensus 153 tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~p~~~~ 224 (361)
T 3m5u_A 153 YGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFSN--IALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPSMLN 224 (361)
T ss_dssp TTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCTT--EEEEEEETTTTSSCTTCEEEEEEHHHHHHHHTCCCCGGGC
T ss_pred cceeCCc-----ccc-cCCEEEEEcccccCCCCCCccc--CCEEEEechhccCCCccEEEEEcHHHHhhhcCCCCCceee
Confidence 9999772 444 4999999999999999999985 79999999998899999999999987665544 2221
Q ss_pred Cc--cccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCe-EEeCCCCCcccceEEEEEc
Q 040741 285 GG--QERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGV-VVNGSMERRYIGNLNLSFA 359 (457)
Q Consensus 285 ~~--~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 359 (457)
+. .+.+.+++|+++..++++.+|++++.+ +++++.++.+++++++++.|++ ++++ .++.+++.+.+.++.|.++
T Consensus 225 ~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~-~~g~~~~~~~~~~rs~~ivsf~~~ 303 (361)
T 3m5u_A 225 YLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDL-SNGFYKGHADKKDRSLMNVSFNIA 303 (361)
T ss_dssp HHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHT-STTSEEESSCGGGBCSSEEEEEES
T ss_pred hHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-CCCeeeccCCHHHcCCeEEEEECC
Confidence 11 134566789999999999999999886 4999999999999999999999 8765 6665555555678888887
Q ss_pred c---ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 360 Y---VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 360 ~---~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
+ .+ .++...| +||.+..|..+. +.+|+++..++|+||||+++++|+++.++
T Consensus 304 ~~~~~~-~~~~~~L~~~gI~~~~g~~~~---------------------g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 304 KNKDLE-PLFVKEAEEAGMIGLKGHRIL---------------------GGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp SCTTHH-HHHHHHHHHTTEECCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred Cchhhh-HHHHHHHHHCCCEEecCCCcc---------------------CeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 5 22 3555555 688887764321 56999999999999999999999998876
No 18
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=100.00 E-value=2.8e-37 Score=313.51 Aligned_cols=351 Identities=16% Similarity=0.183 Sum_probs=275.8
Q ss_pred CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchh-hhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741 56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFG-WESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS 134 (457)
Q Consensus 56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a 134 (457)
.+.+|||.++.++.++.+.+++.+.+.. +++.....|..+ ..+.+..+++++++++++|++++++++|+|+|++++++
T Consensus 66 ~~~iyld~~~~g~~p~~v~~~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~ 144 (465)
T 3e9k_A 66 ENAIYFLGNSLGLQPKMVKTYLEEELDK-WAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLL 144 (465)
T ss_dssp CBCEECBTTTSCCEETTHHHHHHHHHHH-HHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHH
T ss_pred CCeEEecCCccCCChHHHHHHHHHHHHH-HHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHH
Confidence 4789999999998888888888777643 221111111111 11224567789999999999988999999999999999
Q ss_pred HHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEE-----EEEeCCCCCCCCHHHHHHhcC---CCceEEEEecc
Q 040741 135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEI-----TYLPVGADGIVNLDELRAAIR---PDTGLISVMAV 205 (457)
Q Consensus 135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v-----~~v~~~~~~~~d~~~le~~i~---~~t~li~i~~~ 205 (457)
++++.... .++++|+++.++|++...++. .++..|+++ ...+.+.++.+|+++++++|+ +++++|+++++
T Consensus 145 ~~~~~~~~-~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~ 223 (465)
T 3e9k_A 145 MLSFFKPT-PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGV 223 (465)
T ss_dssp HHHHCCCC-SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESB
T ss_pred HHHhcccc-CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCc
Confidence 99986211 235569999999999877555 345568774 345666778899999999996 68999999999
Q ss_pred ccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccccc--CCCCceEEEEecCCCcccccccc
Q 040741 206 NNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIY--GPKGVGALYMRRRPRIRVEPLIN 283 (457)
Q Consensus 206 ~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~--g~~G~G~l~~~~~~~~~~~~~~~ 283 (457)
+|++|.+.|+++|.++|++||+++++|++|+.|..++++..+++|++++|+||++ ||.|+|+++++++..+++.+...
T Consensus 224 ~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~ 303 (465)
T 3e9k_A 224 HFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALV 303 (465)
T ss_dssp CTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSC
T ss_pred ccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCccc
Confidence 9999999999999999999999999999999999998888888999999999966 67789999999988777776655
Q ss_pred CCcc------------------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcC-------
Q 040741 284 GGGQ------------------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKL------- 337 (457)
Q Consensus 284 ~~~~------------------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~------- 337 (457)
||.. ..++..|+++...++++.++++.+.+ +++++.++..++++++.+.|++ +
T Consensus 304 g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~ 382 (465)
T 3e9k_A 304 GWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKH-NYGKDKAA 382 (465)
T ss_dssp CGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HCC-----
T ss_pred CccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh-hccccccc
Confidence 4211 13456679999999999999998876 4899999999999999999988 5
Q ss_pred ---CCeEEeCCCCC-cccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-
Q 040741 338 ---DGVVVNGSMER-RYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI- 410 (457)
Q Consensus 338 ---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~- 410 (457)
+++.++.+.+. ..++++.+.++ .+..++...| +||.+..+ ..+.|||++
T Consensus 383 ~~~~g~~~~~p~~~~~~g~~~~~~~~-~~~~~l~~~L~~~Gi~v~~~-----------------------~~~~iRis~~ 438 (465)
T 3e9k_A 383 TKKPVVNIITPSHVEERGCQLTITFS-VPNKDVFQELEKRGVVCDKR-----------------------NPNGIRVAPV 438 (465)
T ss_dssp ----CEEECSCSSGGGBCSCEEEEEC-CTTCCHHHHHHTTTEECEEE-----------------------TTTEEEEBCC
T ss_pred cCCCCeEEeCCCCHhhcccEEEEEec-CCHHHHHHHHHHCCEEEecC-----------------------CCCEEEEeCc
Confidence 78998875432 23566677776 4455666666 57776521 127999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 040741 411 GRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 411 ~~~~t~edid~~~~~l~~~~~~~ 433 (457)
+.+++.+||++++++|++++++.
T Consensus 439 ~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 439 PLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp TTTCCHHHHHHHHHHHHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999988643
No 19
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=100.00 E-value=5e-37 Score=303.27 Aligned_cols=338 Identities=18% Similarity=0.225 Sum_probs=271.4
Q ss_pred EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC--CcEEEeCChHHHHHHHHHH
Q 040741 60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP--KEIIFTSGATESNNVSIKG 137 (457)
Q Consensus 60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~--~~i~~t~g~T~a~~~al~~ 137 (457)
++...++.++++++++++.+.+... +++...+...++++++++++|+++ +++++|+|||+|+. ++.+
T Consensus 4 ~~~~~gp~~~~~~v~~a~~~~~~~~----------~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~ 72 (384)
T 3zrp_A 4 LLLHVGPTTIKEDVLVAGLENNVGF----------TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTS 72 (384)
T ss_dssp --CCSSCSCCCHHHHHHTTCCSCCT----------TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGG
T ss_pred eeccCCCCCCCHHHHHHhhcccccc----------ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHh
Confidence 4556678899999999988765321 133446788999999999999987 78999999999999 8888
Q ss_pred hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccChH
Q 040741 138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPME 216 (457)
Q Consensus 138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~l~ 216 (457)
+. ++||+|++..+.|.+.. ....+...|.+++.++.+.++.+|++++++++++ ++++|++++++||+|.+.|++
T Consensus 73 ~~----~~gd~vi~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~ 147 (384)
T 3zrp_A 73 LL----KPNDKILVVSNGVFGDR-WEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVK 147 (384)
T ss_dssp GC----CTTCEEEEECSSHHHHH-HHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHH
T ss_pred hc----CCCCEEEEecCCcchHH-HHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHH
Confidence 87 89999999998887632 1233356699999999998889999999999987 899999999999999999999
Q ss_pred HHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccc-cccccC----------
Q 040741 217 EIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRV-EPLING---------- 284 (457)
Q Consensus 217 ~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~-~~~~~~---------- 284 (457)
+|.++|++||+++|+|++|+.+..+.++...++|++++|+|| ++|+.|+|+++++++..+++ .+....
T Consensus 148 ~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (384)
T 3zrp_A 148 DVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWL 227 (384)
T ss_dssp HHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHH
T ss_pred HHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHH
Confidence 999999999999999999999988888887889999999999 55788899999998765555 211100
Q ss_pred -Cccc----cccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC-CCcccceEEEE
Q 040741 285 -GGQE----RGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVVNGSM-ERRYIGNLNLS 357 (457)
Q Consensus 285 -~~~~----~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 357 (457)
.... ...+.|+++...+.++.++++.+.+. ++++.++.+++++++.+.|++ + ++.+..+. ....+.++.+.
T Consensus 228 ~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~ 305 (384)
T 3zrp_A 228 PVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEA-L-GLEIVARRPESYSNTVTGVI 305 (384)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSCSSGGGBCSSEEEEE
T ss_pred HHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-C-CCeEccCcccccCccEEEEE
Confidence 0000 22333688999999998899887664 899999999999999999999 6 77776654 22335566677
Q ss_pred EccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741 358 FAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 358 ~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~ 435 (457)
++..+..++...| +||.+.+|..|.. ++|||+++..++++|+++++++|++++++++.
T Consensus 306 ~~~~~~~~~~~~l~~~gi~v~~g~~~~~--------------------~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 365 (384)
T 3zrp_A 306 LKVADPQKVLAGTVNEGVEFAPGVHPAF--------------------KYFRIGHMGWVTPNDAIIAISVIERTLRKLGE 365 (384)
T ss_dssp CSSSCHHHHHHHHHTTTCCCEECCCTTC--------------------CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHCCEEEecCCCCCc--------------------CEEEEeccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 7665667777776 6888887754321 78999999999999999999999999998763
No 20
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=100.00 E-value=1.9e-36 Score=302.15 Aligned_cols=343 Identities=16% Similarity=0.250 Sum_probs=278.6
Q ss_pred CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCc-EEEeCChHHHHHHH
Q 040741 56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKE-IIFTSGATESNNVS 134 (457)
Q Consensus 56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~-i~~t~g~T~a~~~a 134 (457)
....+|..+++.++++++++++.+.... .+.....+...++++++++++|.++++ +++++|||+|++++
T Consensus 11 ~~~~~~~~pgp~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~ 80 (411)
T 3nnk_A 11 PPSRLLMGPGPINADPRVLRAMSSQLIG----------QYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAI 80 (411)
T ss_dssp CCCCEEESSSCCCCCHHHHHHHTSCCCC----------TTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHH
T ss_pred CccceeecCCCCCCCHHHHHHhhccccc----------cccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHH
Confidence 4456888889999999999998765421 112334478899999999999998765 88999999999999
Q ss_pred HHHhhhhhcCCCCEEEEcCCCCcc--hHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEecccccccc
Q 040741 135 IKGVMHFYKDKKRHVITTQTEHKC--VLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGV 211 (457)
Q Consensus 135 l~~~~~~~~~~g~~vi~~~~~h~~--~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~ 211 (457)
++++. ++|++|++..+.|++ +...+ +..|++++.++.+.++.+|++++++++++ ++++|++++++|++|.
T Consensus 81 ~~~~~----~~gd~Vl~~~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~ 153 (411)
T 3nnk_A 81 LVSAI----RPGDKVLVPVFGRFGHLLCEIA---RRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTM 153 (411)
T ss_dssp HHHHC----CTTCEEEEEECSHHHHHHHHHH---HHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTE
T ss_pred HHHhc----CCCCEEEEecCCchHHHHHHHH---HHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcce
Confidence 99997 899999999999977 44443 44599999999998889999999999986 8999999999999999
Q ss_pred ccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccc------cC
Q 040741 212 IQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLI------NG 284 (457)
Q Consensus 212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~------~~ 284 (457)
+.|+++|.++|++||+++|+|++++.+..+++...+++|++++|+|| ++|+.|+|+++++++..+++.+.. .|
T Consensus 154 ~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g 233 (411)
T 3nnk_A 154 LQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRT 233 (411)
T ss_dssp ECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCC
T ss_pred eccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccc
Confidence 99999999999999999999999999998888888889999999999 588889999999987655443321 11
Q ss_pred Ccc-----------------------ccccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCe
Q 040741 285 GGQ-----------------------ERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGV 340 (457)
Q Consensus 285 ~~~-----------------------~~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~ 340 (457)
+++ ..++..++++...+.++.++++...+. +++..++.+++++++.+.|++ + ++
T Consensus 234 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~ 311 (411)
T 3nnk_A 234 DAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQA-M-GL 311 (411)
T ss_dssp TTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TC
T ss_pred cccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CC
Confidence 111 223466788999999998899887765 899999999999999999999 5 77
Q ss_pred EEeCCCCCcccceEEEEEc-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCC
Q 040741 341 VVNGSMERRYIGNLNLSFA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTT 415 (457)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t 415 (457)
.+..+.....+.++.+.++ +.+..++...| + ||.+.+|.. ....++|||++ +..++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~-------------------~~~~~~iRi~~~~~~~~ 372 (411)
T 3nnk_A 312 ETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFG-------------------PLHGKVWRIGTMGYNAR 372 (411)
T ss_dssp CBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCG-------------------GGTTTEEEEECCGGGCS
T ss_pred EeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccC-------------------CCCCCEEEEeCccCcCC
Confidence 7766544445667777774 45667777766 4 999887632 12237999998 76778
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 040741 416 EAEVDRAIELTVKQVEKLREM 436 (457)
Q Consensus 416 ~edid~~~~~l~~~~~~~~~~ 436 (457)
++|+++++++|++++++++..
T Consensus 373 ~~~i~~~~~~l~~~l~~~~~~ 393 (411)
T 3nnk_A 373 KDCVMTTLSALEAVLNYLKFP 393 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999877543
No 21
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=100.00 E-value=1.1e-36 Score=299.50 Aligned_cols=344 Identities=15% Similarity=0.197 Sum_probs=262.1
Q ss_pred CCCcEEecC-CCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHH-HHHHhCCCCCcEEEeCChHHHHH
Q 040741 55 AGRPLYLDM-QATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQ-IADLIGASPKEIIFTSGATESNN 132 (457)
Q Consensus 55 ~~~~i~l~~-~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-la~~~g~~~~~i~~t~g~T~a~~ 132 (457)
..+++|||+ .+.+++++++.+++.+.+...........+..++...+...+++++ +++++|.+ ++++++|+|+|+.
T Consensus 6 ~~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a~~ 83 (371)
T 2e7j_A 6 TKDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKF 83 (371)
T ss_dssp --CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHH
T ss_pred CCCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHHHH
Confidence 456899999 5577899999999999886532111110223344455678899999 99999987 7999999999999
Q ss_pred HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEe--CCCCCCCCHHHHHHhcC-----CCceEEEEecc
Q 040741 133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLP--VGADGIVNLDELRAAIR-----PDTGLISVMAV 205 (457)
Q Consensus 133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~--~~~~~~~d~~~le~~i~-----~~t~li~i~~~ 205 (457)
++++++. ++|++|+++.++|+++..+++.. |++++.++ .+.++.+|+++++++++ +++++|+++++
T Consensus 84 ~~~~~~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~ 156 (371)
T 2e7j_A 84 AVMHSLA----KKDAWVVMDENCHYSSYVAAERA---GLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYP 156 (371)
T ss_dssp HHHHHHC----CTTCEEEEETTCCHHHHHHHHHT---TCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESS
T ss_pred HHHHHHh----CCCCEEEEccCcchHHHHHHHHc---CCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECC
Confidence 9999987 89999999999999999886554 99999999 77778899999999998 78999999999
Q ss_pred ccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcc-cccccc
Q 040741 206 NNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIR-VEPLIN 283 (457)
Q Consensus 206 ~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~-~~~~~~ 283 (457)
+||+|.+.|+++|.++|++||+++|+|++|+.+..+.++..+++|++++|+|| ++++.|+|+++++++..++ +.+...
T Consensus 157 ~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~ 236 (371)
T 2e7j_A 157 DGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEK 236 (371)
T ss_dssp CTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSS
T ss_pred CCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhcccccc
Confidence 99999999999999999999999999999999887666655678999999999 5566689999999987777 766554
Q ss_pred CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc
Q 040741 284 GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRI--TALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV 361 (457)
Q Consensus 284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (457)
++....+++.+++++..+.++.++++.+.. +..++. +++++++.+.|.+ + ++.+..+... ..+++.+.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~-~~~~~~~~~~-- 308 (371)
T 2e7j_A 237 YKNKEVELLGCTARGATIITLMASFPHVRE---RIKRWDEEVEKARRFAAEMEK-L-GIKQLGDNPH-NHDLMFFHAE-- 308 (371)
T ss_dssp CTTSBGGGTTCCCCSHHHHHHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHH-T-TCEEESSSSC-CSSEEEEECH--
T ss_pred CcccccccccCCcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-c-CcEEecCCCc-cCceEEEECC--
Confidence 333333344678888888888788877654 556677 8889999999998 6 8888764321 2455666655
Q ss_pred cchHHHhcc--cCeEecccCccCCCCCChhHHHHHc---CCCccCCCCeEE-EecCCC-CCHHHHHHHHHHHHHHHHH
Q 040741 362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRAL---GVDEDMAHTSIR-FGIGRF-TTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~---g~~~~~~~~~iR-i~~~~~-~t~edid~~~~~l~~~~~~ 432 (457)
+..++...| +||.+.+ . .... |. ..+.+| |+++.. ++++++++++++|++++++
T Consensus 309 ~~~~~~~~l~~~gi~~~~-~------------~~~~~~~g~----~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 309 VLYEISKKAKGGRFFLYR-E------------LKSRKIHGI----KPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp HHHHHHHHSSSGGGHHHH-H------------HHHTTEECS----CTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEEEEe-c------------cccccccCC----CCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 455666666 4665543 1 0111 21 137899 999988 8999999999999998865
No 22
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=100.00 E-value=7.7e-36 Score=296.09 Aligned_cols=337 Identities=17% Similarity=0.242 Sum_probs=268.5
Q ss_pred CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHH
Q 040741 56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNNVS 134 (457)
Q Consensus 56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~a 134 (457)
.+..||++.++.++++++.+++.+.+.. .++....+...++++++++++|++++ ++++|+|||+|++++
T Consensus 32 ~~~~~l~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~ 101 (393)
T 1vjo_A 32 VPSRLLLGPGPSNAHPSVLQAMNVSPVG----------HLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEAT 101 (393)
T ss_dssp CCCCEECSSSCCCCCHHHHHHHSSCCCC----------TTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHH
T ss_pred CccceeccCCCCCCCHHHHHHHhccccc----------ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHH
Confidence 3457999999999999999999877542 12333457888999999999999877 899999999999999
Q ss_pred HHHhhhhhcCCCCEEEEcCCCCcc--hHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEecccccccc
Q 040741 135 IKGVMHFYKDKKRHVITTQTEHKC--VLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGV 211 (457)
Q Consensus 135 l~~~~~~~~~~g~~vi~~~~~h~~--~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~ 211 (457)
++++. ++|++|++..+.|++ +...++ ..|++++.++.+.++.+|+++|++++++ ++++|++++++||+|.
T Consensus 102 ~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~---~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~ 174 (393)
T 1vjo_A 102 IANAV----EPGDVVLIGVAGYFGNRLVDMAG---RYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGA 174 (393)
T ss_dssp HHHHC----CTTCEEEEEESSHHHHHHHHHHH---HTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTE
T ss_pred HHhcc----CCCCEEEEEcCChhHHHHHHHHH---HcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcce
Confidence 99987 899999999999988 555544 4499999999988888999999999988 8999999999999999
Q ss_pred ccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccc---ccCCcc
Q 040741 212 IQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPL---INGGGQ 287 (457)
Q Consensus 212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~---~~~~~~ 287 (457)
+.|+++|.++|+++|+++|+|++|++|..++++...++|++++|+|| +.++.|+|+++++++..+++... ..++..
T Consensus 175 ~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~ 254 (393)
T 1vjo_A 175 RQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYL 254 (393)
T ss_dssp ECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTT
T ss_pred eccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceec
Confidence 99999999999999999999999999888877777789999999999 45566799999998765544211 111100
Q ss_pred ---------cc-ccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741 288 ---------ER-GIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356 (457)
Q Consensus 288 ---------~~-~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (457)
.. ....++++...+.++..+++...+ ++++..++++++++++.+.|++ + ++.+..+.....+.++.+
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~ 332 (393)
T 1vjo_A 255 DMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLED-I-GLSLHVEKEYRLPTLTTV 332 (393)
T ss_dssp CHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCSSEEEE
T ss_pred CcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCccccCCcEEEE
Confidence 01 122347888888888889988654 5889999999999999999998 6 777765432223455666
Q ss_pred EEc-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHHHH
Q 040741 357 SFA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 357 ~~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t~edid~~~~~l~~~~ 430 (457)
.++ +.+..++...| + ||.+.+|..|.. .+++||++ +..++++++++++++|++++
T Consensus 333 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 333 CIPDGVDGKAVARRLLNEHNIEVGGGLGELA-------------------GKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp ECCTTCCHHHHHHHHHHHHCEECEECCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHhhCCEEEecCccccC-------------------CCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 664 34566777766 5 999988875421 27999995 45567888999999999875
No 23
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=100.00 E-value=5.9e-36 Score=299.02 Aligned_cols=339 Identities=16% Similarity=0.220 Sum_probs=271.3
Q ss_pred EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEE-EeCChHHHHHHHHHHh
Q 040741 60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEII-FTSGATESNNVSIKGV 138 (457)
Q Consensus 60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~-~t~g~T~a~~~al~~~ 138 (457)
++...++.++++++.+++.+... +.+.....+...++++++++++|+++++++ +++|+|+|+.++++++
T Consensus 13 ~~~~p~p~~~~~~v~~a~~~~~~----------~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l 82 (416)
T 3isl_A 13 TIMTPGPVEVDPRVLRVMSTPVV----------GQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV 82 (416)
T ss_dssp EECSSSSCCCCHHHHHHTTSCCC----------CTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH
T ss_pred eeecCCCcCcCHHHHHHhcccCC----------CCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh
Confidence 55556677888888888766321 122334457889999999999999877655 9999999999999998
Q ss_pred hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC-CCceEEEEeccccccccccChHH
Q 040741 139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQPMEE 217 (457)
Q Consensus 139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~~l~~ 217 (457)
. ++||+|++..+.|++.. ....++..|++++.++.+.++.+|+++++++++ +++++|++++++||+|.+.|+++
T Consensus 83 ~----~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~ 157 (416)
T 3isl_A 83 I----EPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKA 157 (416)
T ss_dssp C----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHH
T ss_pred c----CCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHH
Confidence 7 89999999999988732 122334459999999999889999999999998 68999999999999999999999
Q ss_pred HHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccc---cCC--------
Q 040741 218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLI---NGG-------- 285 (457)
Q Consensus 218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~---~~~-------- 285 (457)
|.++|++||+++|+|++|+.|..+++...+++|++++|+|| ++|+.|+|+++++++..+++.+.. .||
T Consensus 158 i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~ 237 (416)
T 3isl_A 158 IGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAA 237 (416)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchh
Confidence 99999999999999999999998888888889999999999 688999999999987665554321 000
Q ss_pred --------------------ccccccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeC
Q 040741 286 --------------------GQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVVNG 344 (457)
Q Consensus 286 --------------------~~~~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 344 (457)
....++..++++...+.++.++++...+. +++..++.+++++++.+.|.+ . ++.+..
T Consensus 238 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~ 315 (416)
T 3isl_A 238 LSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKA-M-GLRLFG 315 (416)
T ss_dssp ---CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBCS
T ss_pred ccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCEecc
Confidence 01334567788999999998999887765 899999999999999999999 4 887776
Q ss_pred CCCCcccceEEEEEc-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH-H
Q 040741 345 SMERRYIGNLNLSFA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE-V 419 (457)
Q Consensus 345 ~~~~~~~~~~~~~~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed-i 419 (457)
+.....+.++.+.++ +.+..++...| + ||.+.+|.. ....+++||+++.+.+.+| +
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~-------------------~~~~~~iRi~~~~~~~~~e~i 376 (416)
T 3isl_A 316 DDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFG-------------------PLAGKIWRIGTMGYSCRKENV 376 (416)
T ss_dssp CGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCS-------------------TTTTTEEEEECCGGGCSHHHH
T ss_pred CccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCC-------------------CCCCCEEEEecccCCCcHHHH
Confidence 544444567777774 45667777777 4 898887642 1223799999977666666 9
Q ss_pred HHHHHHHHHHHHHHH
Q 040741 420 DRAIELTVKQVEKLR 434 (457)
Q Consensus 420 d~~~~~l~~~~~~~~ 434 (457)
++++++|++++++++
T Consensus 377 ~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 377 LFVLAGLEAVLLRHN 391 (416)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998764
No 24
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=100.00 E-value=4.4e-35 Score=292.86 Aligned_cols=357 Identities=18% Similarity=0.217 Sum_probs=271.2
Q ss_pred cccccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 50 KGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 50 ~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
+.++...+.+|||++++++.++++.+++.+.+...++++... ..+.....+...++++++++++|+++++++||+|+|+
T Consensus 21 ~~f~~~~~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~ 99 (416)
T 1qz9_A 21 QQFALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIR-SWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSI 99 (416)
T ss_dssp GGBCCCTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGG-HHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHH
T ss_pred HhCCCCCCeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCcc-ccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhH
Confidence 334445678999999999999999999999987655554321 0111112367889999999999998888999999999
Q ss_pred HHHHHHHHhhhhh--cCCCCE-EEEcCCCCcchHHHHHHH-Hhc--CcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEe
Q 040741 130 SNNVSIKGVMHFY--KDKKRH-VITTQTEHKCVLDSCRHL-QQE--GFEITYLPVGADGIVNLDELRAAIRPDTGLISVM 203 (457)
Q Consensus 130 a~~~al~~~~~~~--~~~g~~-vi~~~~~h~~~~~~~~~~-~~~--G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~ 203 (457)
++.++++++..+. +++|++ |+++..+|+++..++..+ ... |++++.++. ++++++++++++++|+++
T Consensus 100 al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~~~~~~v~~~ 172 (416)
T 1qz9_A 100 NLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAIDQDTAVVMLT 172 (416)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCSTTEEEEEEE
T ss_pred HHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhCCCceEEEEe
Confidence 9998888765211 045665 677778999888776544 333 899999886 789999999999999999
Q ss_pred ccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccc-cCCCCc-eEEEEecCCCcccccc
Q 040741 204 AVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKI-YGPKGV-GALYMRRRPRIRVEPL 281 (457)
Q Consensus 204 ~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~-~g~~G~-G~l~~~~~~~~~~~~~ 281 (457)
+++||+|.+.|+++|.++|++||+++|+|++|++|..++++..+++|++++|+||+ +++.|+ |+++++++..+++.+.
T Consensus 173 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~ 252 (416)
T 1qz9_A 173 HVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQP 252 (416)
T ss_dssp SBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCS
T ss_pred ccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccCCC
Confidence 99999999999999999999999999999999998877666556789999999995 456667 9999999887777665
Q ss_pred ccCC-cc---------------ccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCC--CeEE
Q 040741 282 INGG-GQ---------------ERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLD--GVVV 342 (457)
Q Consensus 282 ~~~~-~~---------------~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~ 342 (457)
..++ +. ..++..++++...++++.++++.+. ++++++.++.+++++++.+.|.+.++ ++.+
T Consensus 253 ~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~ 332 (416)
T 1qz9_A 253 LSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTL 332 (416)
T ss_dssp CCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred ccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 4432 11 1245667889999998888998876 36788999999999999999988225 7888
Q ss_pred eCCCCC-cccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecC-CCCCHHH
Q 040741 343 NGSMER-RYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIG-RFTTEAE 418 (457)
Q Consensus 343 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~-~~~t~ed 418 (457)
..+... ...+++.+.++ +..++...| +||.+... ..+.+||+++ ..++++|
T Consensus 333 ~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~gi~~~~~-----------------------~~~~lRis~~~~~~t~~~ 387 (416)
T 1qz9_A 333 VTPREHAKRGSHVSFEHP--EGYAVIQALIDRGVIGDYR-----------------------EPRIMRFGFTPLYTTFTE 387 (416)
T ss_dssp CSCSSGGGBCSEEEEECT--THHHHHHHHHTTTEECEEE-----------------------TTTEEEEECCTTTCCHHH
T ss_pred eCCCCHHHcCCEEEEecC--CHHHHHHHHHhCCcEeccC-----------------------CCCeEEEeCcccCCCHHH
Confidence 765321 22445555544 355666666 57665311 1279999998 4889999
Q ss_pred HHHHHHHHHHHHHHHHhcChh
Q 040741 419 VDRAIELTVKQVEKLREMSPL 439 (457)
Q Consensus 419 id~~~~~l~~~~~~~~~~~~~ 439 (457)
+++++++|++++++..-..|.
T Consensus 388 i~~~~~~l~~~~~~~~~~~~~ 408 (416)
T 1qz9_A 388 VWDAVQILGEILDRKTWAQAQ 408 (416)
T ss_dssp HHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHhcccccccc
Confidence 999999999998865434444
No 25
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=100.00 E-value=1.3e-35 Score=289.58 Aligned_cols=332 Identities=18% Similarity=0.204 Sum_probs=264.2
Q ss_pred EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHH
Q 040741 60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--PKEIIFTSGATESNNVSIKG 137 (457)
Q Consensus 60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~i~~t~g~T~a~~~al~~ 137 (457)
++.++++.++++++++++.+.+.. + .++...+...++++++++++|.+ ++++++|+|||+|+.+++++
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~ 71 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRG---------H-LDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLAN 71 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCC---------T-TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHT
T ss_pred ccCCCCCCCCCHHHHHHHhccccc---------c-cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHH
Confidence 456778889999999998877642 1 12344567899999999999985 56799999999999999998
Q ss_pred hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccChH
Q 040741 138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPME 216 (457)
Q Consensus 138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~l~ 216 (457)
+. + ++|+++.++|+++ .....++..|++++.++.+.++.+|++++++++++ ++++|++++++||+|.+.|++
T Consensus 72 ~~----~--d~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~ 144 (353)
T 2yrr_A 72 LD----R--GPVLVLVNGAFSQ-RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAE 144 (353)
T ss_dssp CS----C--CCEEEEECSHHHH-HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHH
T ss_pred hc----C--CcEEEEcCCCchH-HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHH
Confidence 86 5 7899999899886 33344456699999999988888999999999987 899999999999999999999
Q ss_pred HHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccCC---------c
Q 040741 217 EIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGG---------G 286 (457)
Q Consensus 217 ~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~---------~ 286 (457)
+|.++|++||+++|+|++|+++..+.++..+++|++++|+|| ++|+.|+|+++++++..+++.. ..++ .
T Consensus 145 ~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~-~~~~~~~~~~~~~~ 223 (353)
T 2yrr_A 145 AIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG-KRGWYLDLARVAEH 223 (353)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC-CSCSTTCHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc-CCCccccHHHHhhh
Confidence 999999999999999999998877766655578999999999 6788889999999876655542 0100 0
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc-cccch
Q 040741 287 QERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA-YVEGE 364 (457)
Q Consensus 287 ~~~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 364 (457)
.......++++...+.++.++++...+. +++..++.+++++++.+.|++ + ++.+..++ ...+.++.+.++ +.+..
T Consensus 224 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-~~~~~~~~~~~~~~~~~~ 300 (353)
T 2yrr_A 224 WERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKA-R-GFRPYPKA-SPLPTVLVVRPPEGVDAD 300 (353)
T ss_dssp HTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCEESCSS-SBCTTEEEEECCTTCCHH
T ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-C-CCccccCc-cCCCeEEEEECCCCCCHH
Confidence 1123445688888888888888877654 889999999999999999999 6 88887632 223455556664 44566
Q ss_pred HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHH-HHHHHHHHHHH
Q 040741 365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD-RAIELTVKQVE 431 (457)
Q Consensus 365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid-~~~~~l~~~~~ 431 (457)
++...| +||.+.+|..|. ..+.+|++++...+++|++ +++++|+++++
T Consensus 301 ~~~~~l~~~gi~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 301 RLVRALYAEGVAVAGGIGPT-------------------RGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp HHHHHHHHTTEECEECCGGG-------------------TTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEeCCcccc-------------------CCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 777766 699998876442 1278999998777889999 99999998875
No 26
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=100.00 E-value=1.7e-35 Score=293.87 Aligned_cols=347 Identities=16% Similarity=0.198 Sum_probs=270.7
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNNVSI 135 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~al 135 (457)
+..|+.+.++.++++++.+++.+.+... +.........++++.+++++|.+++ ++++|+|||+|+.+++
T Consensus 17 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~----------~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~ 86 (396)
T 2ch1_A 17 PEKIMMGPGPSNCSKRVLTAMTNTVLSN----------FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAML 86 (396)
T ss_dssp CCCBCCSSSSCCCCHHHHHHTTSCCCCT----------TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHH
T ss_pred CcceeecCCCCCCCHHHHHHhccccccC----------CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHH
Confidence 3457777778889999999887654211 1223345688999999999999887 7999999999999999
Q ss_pred HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccC
Q 040741 136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQP 214 (457)
Q Consensus 136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~ 214 (457)
.++. ++|++|++..++|.++. ....++..|++++.++.+.++.+|++++++++++ ++++|++++++||+|.+.|
T Consensus 87 ~~~~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 161 (396)
T 2ch1_A 87 SNLL----EEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP 161 (396)
T ss_dssp HHHC----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred HHhc----CCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecC
Confidence 9987 89999999999999874 2233455699999999988888999999999987 8999999999999999999
Q ss_pred hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccc-------ccC--
Q 040741 215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPL-------ING-- 284 (457)
Q Consensus 215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~-------~~~-- 284 (457)
+++|.++|+++|+++|+|++|++|..++++..+++|++++|+|| ++|+.|+|+++++++.++.+... ..+
T Consensus 162 ~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (396)
T 2ch1_A 162 LEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLL 241 (396)
T ss_dssp CTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHH
T ss_pred HHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechH
Confidence 99999999999999999999999988887777788999999999 67788899999987655443221 111
Q ss_pred -----C--ccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC-CcccceEE
Q 040741 285 -----G--GQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME-RRYIGNLN 355 (457)
Q Consensus 285 -----~--~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~ 355 (457)
+ .....+..++++...+.++.++++...+ ++++..++.+++++++.+.|.+ + ++.+..+.. ...+.++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~ 319 (396)
T 2ch1_A 242 LLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGK-M-GLDIFVKDPRHRLPTVTG 319 (396)
T ss_dssp HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-H-TCCBSSCSGGGBCTTEEE
T ss_pred HHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-C-CCeeccCCccccCCceEE
Confidence 0 0112345678888888888888887644 5888999999999999999998 5 777765433 22344666
Q ss_pred EEEc-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHHHH
Q 040741 356 LSFA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 356 ~~~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t~edid~~~~~l~~~~ 430 (457)
+.++ +.+..++...| + ||.+.+|..|. ..+++||++ +..++++|+++++++|++++
T Consensus 320 ~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~-------------------~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l 380 (396)
T 2ch1_A 320 IMIPKGVDWWKVSQYAMNNFSLEVQGGLGPT-------------------FGKAWRVGIMGECSTVQKIQFYLYGFKESL 380 (396)
T ss_dssp EECCTTCCHHHHHHHHHHHHCBCCBCCCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHhCCEEEecCcccc-------------------CCCEEEEECCCCcCCHHHHHHHHHHHHHHH
Confidence 6664 45667777766 3 88887765331 237999999 55678999999999999998
Q ss_pred HHHHhcChhHHH
Q 040741 431 EKLREMSPLYEM 442 (457)
Q Consensus 431 ~~~~~~~~~~~~ 442 (457)
++++ |.|++
T Consensus 381 ~~~~---~~~~~ 389 (396)
T 2ch1_A 381 KATH---PDYIF 389 (396)
T ss_dssp HHHC---TTCCC
T ss_pred HHhC---ccEEe
Confidence 7653 54543
No 27
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=1.2e-34 Score=283.86 Aligned_cols=335 Identities=16% Similarity=0.115 Sum_probs=264.6
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHH
Q 040741 59 LYLDMQATTPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATESNNVSIK 136 (457)
Q Consensus 59 i~l~~~~~~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a~~~al~ 136 (457)
.++.+.++.++++++++++.+.+.+.. +. .+ ......+...++++++++++|.+ ++++++|+|||+|+++++.
T Consensus 5 ~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~ 79 (362)
T 3ffr_A 5 KIYFTPGPSELYPTVRQHMITALDEKIGVI----SH-RSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQ 79 (362)
T ss_dssp CEEECSSSCCCCTTHHHHHHHHHHTTTTTS----CT-TSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHH
T ss_pred ceeccCCCcCCCHHHHHHHHHHhcCCccCc----CC-CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHH
Confidence 467778888999999999988876422 11 11 23345578899999999999985 5679999999999999999
Q ss_pred HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChH
Q 040741 137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPME 216 (457)
Q Consensus 137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~ 216 (457)
++. ++ .+++....|++. .....++..|++++.++.+.++.+|+++++ +++++++|++++++||+|.+.|++
T Consensus 80 ~l~----~~--~~i~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~ 150 (362)
T 3ffr_A 80 NCV----EK--KSFHCVNGSFSK-RFYEFAGELGREAYKEEAAFGKGFYPADIT--VPADAEIICLTHNETSSGVSMPVE 150 (362)
T ss_dssp HHC----SS--EEEEEECSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CCTTCCEEEEESEETTTTEECCHH
T ss_pred hcc----CC--cEEEEcCcHHHH-HHHHHHHHhCCCeEEEecCCCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHH
Confidence 988 56 544444444442 222344556999999999888889999998 888999999999999999999999
Q ss_pred HHHHHHHhc-CCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-CCCceEEEEecCCCccccccccCCcc-------
Q 040741 217 EIGQICKEF-KIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQ------- 287 (457)
Q Consensus 217 ~i~~l~~~~-~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~------- 287 (457)
+|.++|++| |+++|+|++|+.+..+.+... +|++++|+||++| +.|+|+++++++.++++.+...|++.
T Consensus 151 ~i~~la~~~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 228 (362)
T 3ffr_A 151 DINTFRDKNKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTI 228 (362)
T ss_dssp HHTTSGGGSTTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSH
T ss_pred HHHHHHHhCCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccH
Confidence 999999999 999999999999988776654 8999999999776 88999999998877766655443221
Q ss_pred -------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC-CCCcccceEEEEE
Q 040741 288 -------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGS-MERRYIGNLNLSF 358 (457)
Q Consensus 288 -------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~ 358 (457)
.++...++++...+.++..+++.+.+ +++++.++.+++++++.+.|++ +|++.+..+ +......++.+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~ 307 (362)
T 3ffr_A 229 PSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIES-SKVFSFGVEDAKLRSMTTIVANT 307 (362)
T ss_dssp HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-CSSEEESSSCGGGBCSSEEEEEE
T ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-ccCceeccCChhhcCCceEEEec
Confidence 11223678888888888888887655 4889999999999999999999 889998763 2233455666676
Q ss_pred ccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741 359 AYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 359 ~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~ 430 (457)
+. +..++...| +||.+.+|..|. ..++|||+++..++++|+++++++|++++
T Consensus 308 ~~-~~~~~~~~l~~~gi~~~~g~~~~-------------------~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 308 TM-LPGEINKILEPFDMAVGAGYGSK-------------------KETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp SS-CHHHHHHHHGGGTEEEEECSGGG-------------------TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CC-CHHHHHHHHHHCCeEEecCcccc-------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 65 667777766 689998875442 22799999999999999999999998764
No 28
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=100.00 E-value=4e-35 Score=290.53 Aligned_cols=340 Identities=15% Similarity=0.236 Sum_probs=269.9
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHHHH
Q 040741 59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNNVSIKG 137 (457)
Q Consensus 59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~al~~ 137 (457)
-++.+.++.++++++++++.+.... + +.....+...++++++++++|.+.. ++++|+|||+|+.+++++
T Consensus 24 ~~~~~p~p~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~ 93 (393)
T 3kgw_A 24 RLLLGPGPSNLAPRVLAAGSLRMIG---------H-MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFN 93 (393)
T ss_dssp CEECSSSCCCCCHHHHHHTTCCCCC---------T-TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHH
T ss_pred ceeccCCCCCCCHHHHHHhcccccC---------c-ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHh
Confidence 4778888889999999998764321 1 1223346788999999999999765 499999999999999999
Q ss_pred hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccChH
Q 040741 138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPME 216 (457)
Q Consensus 138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~l~ 216 (457)
+. ++|++|++..+.|.+.. ....+...|.+++.++.+.++.+|++++++++++ ++++|++++++||+|.+.|++
T Consensus 94 ~~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~ 168 (393)
T 3kgw_A 94 LL----EPGDSFLTGTNGIWGMR-AAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLD 168 (393)
T ss_dssp HC----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCT
T ss_pred cC----CCCCEEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHH
Confidence 87 89999999877765331 1233455699999999988888999999999988 899999999999999999999
Q ss_pred HHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccccc------------
Q 040741 217 EIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLIN------------ 283 (457)
Q Consensus 217 ~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~------------ 283 (457)
+|.++|++||+++|+|++|+.|..+++...+++|++++|+|| ++|+.|+|+++++++..+++.+...
T Consensus 169 ~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
T 3kgw_A 169 GFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYL 248 (393)
T ss_dssp THHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHH
T ss_pred HHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHH
Confidence 999999999999999999999988888777889999999999 6678889999999876655543221
Q ss_pred ----CCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC-CCcccceEEEE
Q 040741 284 ----GGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM-ERRYIGNLNLS 357 (457)
Q Consensus 284 ----~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 357 (457)
++....++..++++...+.++.++++...+ ++++..++.+++++++.+.|++ + ++.+..+. ....+.++.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~ 326 (393)
T 3kgw_A 249 AKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQE-M-GLKFFVKDPEIRLPTITTVT 326 (393)
T ss_dssp HHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSSSGGGBCSSEEEEE
T ss_pred HHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCChhhcCCeEEEEe
Confidence 111223456678899999998888887765 4899999999999999999999 5 77765432 22334555566
Q ss_pred Ec-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 040741 358 FA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 358 ~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t~edid~~~~~l~~~~~~ 432 (457)
++ +.+..++...| + ||.+.+|..+. .++++||++ +..++++|+++++++|++++++
T Consensus 327 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 387 (393)
T 3kgw_A 327 VPAGYNWRDIVSYVLDHFSIEISGGLGPT-------------------EERVLRIGLLGYNATTENVDRVAEALREALQH 387 (393)
T ss_dssp CCTTBCHHHHHHHHHHHHCEECBCCCGGG-------------------TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCEEEeCCcccC-------------------CCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence 64 45566777766 4 89998875432 237999998 6556899999999999999987
Q ss_pred HH
Q 040741 433 LR 434 (457)
Q Consensus 433 ~~ 434 (457)
++
T Consensus 388 ~~ 389 (393)
T 3kgw_A 388 CP 389 (393)
T ss_dssp SC
T ss_pred hh
Confidence 64
No 29
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=100.00 E-value=1.3e-34 Score=284.19 Aligned_cols=338 Identities=12% Similarity=0.104 Sum_probs=254.6
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCC---CccchhhhHHHHHHHHHHHHHHHhCCCCC-c-EEEeCChHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHS---RTHLFGWESEVAVETARSQIADLIGASPK-E-IIFTSGATESN 131 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~-i~~t~g~T~a~ 131 (457)
..+|++++++.++|+++++++.+.+....+++.+ ..+ ++....+..+++++.+++++|++++ + +++|+|||+|+
T Consensus 3 ~~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~ 81 (362)
T 2c0r_A 3 ERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSH-RGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQF 81 (362)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCT-TSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHH
T ss_pred cceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCC-CcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHH
Confidence 3589999999999999999999988654322221 122 2344557888999999999999764 6 57889999999
Q ss_pred HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC---CC-CCCHHHHHHhcCCCceEEEEecccc
Q 040741 132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA---DG-IVNLDELRAAIRPDTGLISVMAVNN 207 (457)
Q Consensus 132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~---~~-~~d~~~le~~i~~~t~li~i~~~~~ 207 (457)
++++.++. ++||+|++..+.|.+.. ....++..| ++++++.+. .+ .+|+++++ ++++|++|++++++|
T Consensus 82 ~~~~~~l~----~~gd~vl~~~~~~~~~~-~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n 153 (362)
T 2c0r_A 82 AMIPMNFL----KEGQTANYVMTGSWASK-ALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNET 153 (362)
T ss_dssp HHHHHHHC----CTTCEEEEEECSHHHHH-HHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEET
T ss_pred HHHHHhcC----CCCCeEEEEecCcHhHH-HHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcC
Confidence 99999998 89999988766554431 123334449 999998762 22 35776654 788999999999999
Q ss_pred ccccc-cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccC--
Q 040741 208 EIGVI-QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLING-- 284 (457)
Q Consensus 208 ~~G~~-~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~-- 284 (457)
++|.+ .|+++| +|+++++|++|+.|..++++.+ .|++++|+||++|+.|+|+++++++.++++.+....
T Consensus 154 ~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~~--~d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~~ 225 (362)
T 2c0r_A 154 IEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTML 225 (362)
T ss_dssp TTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGG
T ss_pred ccceeccccccc------CCCEEEEEChhhccCCccchhH--CcEEEEeccccccCcCcEEEEEcHHHHhhccccCchHH
Confidence 99996 678776 8999999999999988877654 499999999998999999999999877766542110
Q ss_pred -C--ccccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCe-EEeCCCCCcccceEEEEE
Q 040741 285 -G--GQERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGV-VVNGSMERRYIGNLNLSF 358 (457)
Q Consensus 285 -~--~~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 358 (457)
+ .+..+...++++...+.++.++++...+ +++++.++.+++++++.+.|++ ++++ .+..++......++.+.+
T Consensus 226 ~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~ 304 (362)
T 2c0r_A 226 RYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQ-SGGFYRGCVDVDSRSDMNITFRL 304 (362)
T ss_dssp CHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-STTSSEESSCGGGBCSSEEEEEC
T ss_pred hHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-cCCccccCCChHHcCCcEEEEEc
Confidence 0 0112234578999999999999998766 5899999999999999999998 6545 765433223345555555
Q ss_pred cc-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 359 AY-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 359 ~~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
+. .+..++...| +||.+.+|..+ .+.|||+++.++++||+++++++|+++++++
T Consensus 305 ~~~~~~~~~~~~L~~~gi~~~~g~~~---------------------~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 305 ASEELEKEFVKASEQEGFVGLKGHRS---------------------VGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp SCHHHHHHHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHCCCeeccCCCC---------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 42 3456676666 68877665422 1579999999999999999999999987654
No 30
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=100.00 E-value=6.7e-35 Score=285.98 Aligned_cols=333 Identities=16% Similarity=0.186 Sum_probs=256.7
Q ss_pred EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHH-HHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHH
Q 040741 60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESE-VAVETARSQIADLIGAS--PKEIIFTSGATESNNVSIK 136 (457)
Q Consensus 60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~la~~~g~~--~~~i~~t~g~T~a~~~al~ 136 (457)
+..+.++..+++++.+++.+.+ + +.++ ... +...++++++++++|.+ ++++++|+|||+|++++++
T Consensus 6 ~~~~~gp~~~~~~v~~a~~~~~----~------~~~~-~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~ 74 (366)
T 1m32_A 6 LLLTPGPLTTSRTVKEAMLFDS----C------TWDD-DYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLG 74 (366)
T ss_dssp EECSSSSCCCCHHHHHTTCCCC----C------TTSH-HHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHH
T ss_pred ccccCCCcCCCHHHHHHHhhhh----c------CCCH-HHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHH
Confidence 3444456678899999987742 1 1111 222 57789999999999942 1369999999999999999
Q ss_pred HhhhhhcCCCCEEEEc-CCCCcch-HHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC--CceEEEEeccccccccc
Q 040741 137 GVMHFYKDKKRHVITT-QTEHKCV-LDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP--DTGLISVMAVNNEIGVI 212 (457)
Q Consensus 137 ~~~~~~~~~g~~vi~~-~~~h~~~-~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~--~t~li~i~~~~~~~G~~ 212 (457)
++. ++|++|++. .++|++. ...+.. .|++++.++.+.++.+|++++++++++ ++++|++++++||+|.+
T Consensus 75 ~~~----~~gd~vi~~~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~ 147 (366)
T 1m32_A 75 SAL----GPQDKVLIVSNGAYGARMVEMAGL---MGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGML 147 (366)
T ss_dssp HSC----CTTCCEEEEESSHHHHHHHHHHHH---HTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEE
T ss_pred Hhc----CCCCeEEEEeCCCccHHHHHHHHH---hCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCccee
Confidence 987 788887655 4677653 333333 499999999988888999999999975 57899999999999999
Q ss_pred cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccCCcc----
Q 040741 213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQ---- 287 (457)
Q Consensus 213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~---- 287 (457)
.|+++|.++|++||+++|+|++|+.+..++++..+++|++++|+|| ++|+.|+|+++++++..+++.+...+...
T Consensus 148 ~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 1m32_A 148 NPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYA 227 (366)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHH
T ss_pred cCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHH
Confidence 9999999999999999999999999888777766779999999999 56888899999998766665442211100
Q ss_pred -------ccccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE
Q 040741 288 -------ERGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF 358 (457)
Q Consensus 288 -------~~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (457)
..+.+.++++...+.++.++++...+. +++..++.+++++++.+.|++ + ++.+..++....+.++.+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~~~~~~~~~~~ 305 (366)
T 1m32_A 228 QWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA-L-GFNTLLDDELHSPIITAFYS 305 (366)
T ss_dssp HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCSSEEEEEC
T ss_pred HHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHH-C-CCeeccCchhcCceEEEEEc
Confidence 001223578888888888899887664 788999999999999999998 6 77665532223344666776
Q ss_pred c---cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 359 A---YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 359 ~---~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
+ +.+..++...| +||.+.+|..|. .+++||+++..++++|+++++++|++++++
T Consensus 306 ~~~~~~~~~~~~~~l~~~gi~v~~~~~~~--------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 306 PEDPQYRFSEFYRRLKEQGFVIYPGKVSQ--------------------SDCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp CCCTTCCHHHHHHHHHHTTEECEECCCSS--------------------SCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred CccCCCCHHHHHHHHHHCCEEEECCcCCC--------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 5 34566676666 699998876542 279999999999999999999999988653
No 31
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=100.00 E-value=3.7e-34 Score=282.20 Aligned_cols=336 Identities=15% Similarity=0.105 Sum_probs=261.4
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cE-EEeCChHHHHHHHHH
Q 040741 59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EI-IFTSGATESNNVSIK 136 (457)
Q Consensus 59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i-~~t~g~T~a~~~al~ 136 (457)
.++-+.++.++++++++++.+.+.. + +.....+...++++++++++|++++ ++ ++++|||+|++++++
T Consensus 20 ~~~~~pgp~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~ 89 (376)
T 3f0h_A 20 MLNFTVGPVMSSEEVRAIGAEQVPY---------F-RTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVM 89 (376)
T ss_dssp CEECSSSSCCCCHHHHHHHTSCCCC---------C-SSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHH
T ss_pred ceeecCCCCCCcHHHHHHhcCCCCC---------C-CCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHH
Confidence 4666778889999999998776531 1 1223447888999999999999753 44 458999999999999
Q ss_pred HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChH
Q 040741 137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPME 216 (457)
Q Consensus 137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~ 216 (457)
++. ++||+|++..+.|.+.. ....+...|.+++.++.+.++.+|++++++++++++++|++++++||+|.+.|++
T Consensus 90 ~~~----~~gd~vi~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~ 164 (376)
T 3f0h_A 90 NCF----TKKDKVLVIDGGSFGHR-FVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTM 164 (376)
T ss_dssp HHC----CTTCCEEEEESSHHHHH-HHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHH
T ss_pred hcc----CCCCeEEEEeCChhhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHH
Confidence 987 89999999887666533 2344566699999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-CCCceEEEEecCCCccccccccCCc---------
Q 040741 217 EIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGG--------- 286 (457)
Q Consensus 217 ~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~--------- 286 (457)
+|.++|++||+++|+|++++.+..++++..+++|++++|+||.+| +.|+|+++++++..+++.+....+.
T Consensus 165 ~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (376)
T 3f0h_A 165 MIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALK 244 (376)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHH
T ss_pred HHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHh
Confidence 999999999999999999999988877766778999999999666 8899999999876655543221110
Q ss_pred -cccccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc
Q 040741 287 -QERGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG 363 (457)
Q Consensus 287 -~~~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (457)
...+....+++...++++.++++.+.+. ++++.++.+++++++.+.|++ + ++.+..+. ....++.+...+.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~--~~~~~~~~~~~~~~~ 320 (376)
T 3f0h_A 245 NQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKD-L-PFELVSES--PANGVTSVHPTTANA 320 (376)
T ss_dssp HHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-S-SEEECCSS--BBTTEEEEEESSSCH
T ss_pred hcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-c-CCccCccc--cCceEEEEeCCCCCH
Confidence 0011223466666778888888877663 889999999999999999998 5 57666432 234444444455566
Q ss_pred hHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 364 ESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 364 ~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
.++...| + ||.+.+|.. ....+++||+++..++++|+++++++|++++++
T Consensus 321 ~~l~~~l~~~~gi~v~~g~~-------------------~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 321 YDIFLKLKDEYGIWICPNGG-------------------EMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp HHHHHHHHHHSSEECEECCG-------------------GGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCEEEecCcc-------------------ccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 7777776 5 898887631 122379999999999999999999999998763
No 32
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.5e-33 Score=276.69 Aligned_cols=332 Identities=18% Similarity=0.147 Sum_probs=254.4
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741 59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV 138 (457)
Q Consensus 59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~ 138 (457)
.||++. ++++++++.+++.+.+...++++.. .....+...++++++++++|++++++++|+|||+|+.++++++
T Consensus 33 ~~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~ 106 (397)
T 3f9t_A 33 NIFGSM-CSNVLPITRKIVDIFLETNLGDPGL-----FKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCI 106 (397)
T ss_dssp CBCSCS-CCCCCTHHHHHHHHHTTCCTTSGGG-----BHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHH
T ss_pred CeEEEe-cCCCcHHHHHHHHHHHhhcCCCccc-----ChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHH
Confidence 577775 4567788999999988765544331 1244578889999999999999889999999999999999998
Q ss_pred hhh---------hcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccc
Q 040741 139 MHF---------YKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNE 208 (457)
Q Consensus 139 ~~~---------~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~ 208 (457)
... ...+|++|+++.++|+++..+++.. |.+++.++.+.++.+|++++++++++ ++++|++++++||
T Consensus 107 ~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~np 183 (397)
T 3f9t_A 107 KNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMM---DLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTE 183 (397)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHH---TCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTT
T ss_pred HHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHc---CceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCC
Confidence 842 1124999999999999999888877 99999999998899999999999998 8999999999999
Q ss_pred cccccChHHHHHHHHhcCCcEEEehhhhcCCC--------------cccCCCCcccEEEecccccc-CCCCceEEEEecC
Q 040741 209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKI--------------PVDVEKWNVSLMSLSGHKIY-GPKGVGALYMRRR 273 (457)
Q Consensus 209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~--------------~~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~~ 273 (457)
+|.+.|+++|.++|++||+++|+|++|+.+.. ++++.. ++|++++|+||++ ++.++|+++++++
T Consensus 184 tG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~ 262 (397)
T 3f9t_A 184 LGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDI 262 (397)
T ss_dssp TCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSG
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCH
Confidence 99999999999999999999999999986543 334444 7899999999965 5667999999876
Q ss_pred CCc-cc---cccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC
Q 040741 274 PRI-RV---EPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER 348 (457)
Q Consensus 274 ~~~-~~---~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 348 (457)
... .+ .+...++.+ ....++.+.....++.+++..+.. ++++..++.+++++++.+.|++ + ++.+..++
T Consensus 263 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-- 336 (397)
T 3f9t_A 263 GYKRYLDVDAPYLTETRQ--ATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKE-N-NFKPVIEP-- 336 (397)
T ss_dssp GGGGGTCEECTTSSSSEE--CSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCC--
T ss_pred HHHHhhccCCccccCCCc--cccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEcCC--
Confidence 432 22 222222111 111234444455555556665543 5788899999999999999999 6 77655542
Q ss_pred cccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741 349 RYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT 426 (457)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l 426 (457)
..+++.+.++ +..++...| +||.+.++.. .+++||+++..++++|+++++++|
T Consensus 337 -~~~~~~~~~~--~~~~~~~~l~~~gi~v~~~~~----------------------~~~~Ri~~~~~~~~e~i~~~~~~l 391 (397)
T 3f9t_A 337 -ILNIVAIEDE--DYKEVCKKLRDRGIYVSVCNC----------------------VKALRIVVMPHIKREHIDNFIEIL 391 (397)
T ss_dssp -SSSEEEEECT--THHHHHHHHHHTTCBCEECSS----------------------SSEEEEECCTTCCHHHHHHHHHHH
T ss_pred -CccEEEEEeC--CHHHHHHHHHhCCeEEeccCC----------------------CCEEEEEEcCCCCHHHHHHHHHHH
Confidence 2444444443 355666666 5888776531 279999999989999999999999
Q ss_pred HHHHH
Q 040741 427 VKQVE 431 (457)
Q Consensus 427 ~~~~~ 431 (457)
+++++
T Consensus 392 ~~~l~ 396 (397)
T 3f9t_A 392 NSIKR 396 (397)
T ss_dssp HHHC-
T ss_pred HHhhC
Confidence 98764
No 33
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=100.00 E-value=6.9e-34 Score=278.60 Aligned_cols=337 Identities=13% Similarity=0.117 Sum_probs=255.0
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccch---hhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCh-HHHHHH
Q 040741 59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLF---GWESEVAVETARSQIADLIGAS-PKEIIFTSGA-TESNNV 133 (457)
Q Consensus 59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~-T~a~~~ 133 (457)
+|+++.++.++|+++++++.+.+... .+++...+.+ .....+..+++++++++++|++ ++++++++|+ |+|+.+
T Consensus 4 ~~~~~~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~ 82 (360)
T 1w23_A 4 VFNFNAGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTM 82 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred eEeecCCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHH
Confidence 68888888899999999999988653 4555433322 4455678899999999999996 4589999998 999999
Q ss_pred HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHH-hcCCCceEEEEecccccccc
Q 040741 134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRA-AIRPDTGLISVMAVNNEIGV 211 (457)
Q Consensus 134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~-~i~~~t~li~i~~~~~~~G~ 211 (457)
++.++... .+++++|+++.++|.+.. .++..| +++.++.+. ++.+|++++++ ++++++++|++++++||+|.
T Consensus 83 ~~~~l~~~-~~~g~~vi~~~~~~~~~~----~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~ 156 (360)
T 1w23_A 83 LPMNLLTK-GTIGNYVLTGSWSEKALK----EAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGT 156 (360)
T ss_dssp HHHHHCCT-TCEEEEEECSHHHHHHHH----HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTE
T ss_pred HHHHhcCC-CCcccEEEecchhHHHHH----HHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcce
Confidence 99988721 023667888777776532 234459 999999874 66789999999 99999999999999999999
Q ss_pred ccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccc---
Q 040741 212 IQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQE--- 288 (457)
Q Consensus 212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~--- 288 (457)
+.| +++++||+++|+|++|+.+..++++..+ |++++|+||.+|+.|+|+++++++.++++.+.. ++...
T Consensus 157 ~~~-----~i~~~~~~~li~D~a~~~~~~~~~~~~~--di~~~s~sK~~~~~G~G~~~~~~~~~~~~~~~~-~~~~~~~~ 228 (360)
T 1w23_A 157 QYQ-----NFPEINHAPLIADMSSDILSRPLKVNQF--GMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQV-PTMLQYAT 228 (360)
T ss_dssp ECS-----SCCCCCSSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTC-CGGGCHHH
T ss_pred ecc-----cccccCCceEEEechhhcCCCCcCcccC--CEEEEEcccccCCCCcEEEEEcHHHHhhcccCC-cchhhhhh
Confidence 987 3444899999999999998877666543 899999999889889999999987766665543 11110
Q ss_pred ---cccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCe-EEeCCCCCcccceEEEEEccc-
Q 040741 289 ---RGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGV-VVNGSMERRYIGNLNLSFAYV- 361 (457)
Q Consensus 289 ---~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 361 (457)
.+...++++...+.++..+++.+.+ +++++.++.+++++++.+.|++ ++++ ....++....+.++.+.++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (360)
T 1w23_A 229 HIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDE-SNGFYVGHAEKGSRSLMNVTFNLRNEE 307 (360)
T ss_dssp HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-TTTSSEESSCGGGBCSSEEEEECSSHH
T ss_pred hhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-ccCcccccCCchhccCcEEEEEcCCCc
Confidence 2344578888888888888887765 4788999999999999999998 7754 443222222233556665432
Q ss_pred cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
+..++...| +||.+.+|..+ .++|||+++..++++++++++++|++++++
T Consensus 308 ~~~~~~~~l~~~gi~~~~~~~~---------------------~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 308 LNQQFLAKAKEQGFVGLNGHRS---------------------VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCeeeecCCCC---------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 234555555 68887665311 278999999999999999999999988653
No 34
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=100.00 E-value=1.7e-33 Score=278.15 Aligned_cols=340 Identities=15% Similarity=0.153 Sum_probs=254.6
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC----CCcEEEeCChHHHHHHH
Q 040741 59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS----PKEIIFTSGATESNNVS 134 (457)
Q Consensus 59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~----~~~i~~t~g~T~a~~~a 134 (457)
.++..+++..+++++++++.+..... +.........+++++++++++.. ++++++|+|||+|++++
T Consensus 6 ~~~~~p~p~~~~~~v~~a~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~ 75 (385)
T 2bkw_A 6 DTLLIPGPIILSGAVQKALDVPSLGH----------TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIF 75 (385)
T ss_dssp CEECSSSSCCCCHHHHHTTSCCCCCT----------TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHH
T ss_pred ceeecCCCcCchHHHHHHHhcccccc----------CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHH
Confidence 36777788889999999987654321 11222345677888888888763 56899999999999999
Q ss_pred HHHhhhhhcCCCCEEEEcCC-CCcchHHHHHHHHhcCcEEEEEeC-CCCCCCCHHHHHHhcCC-CceEEEEecccccccc
Q 040741 135 IKGVMHFYKDKKRHVITTQT-EHKCVLDSCRHLQQEGFEITYLPV-GADGIVNLDELRAAIRP-DTGLISVMAVNNEIGV 211 (457)
Q Consensus 135 l~~~~~~~~~~g~~vi~~~~-~h~~~~~~~~~~~~~G~~v~~v~~-~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~ 211 (457)
++++... .++|++|++... .|.... ...++..|++++.++. +.++.+|+++|++++++ ++++|++++++||+|.
T Consensus 76 ~~~~~~~-~~~gd~vlv~~~~~~~~~~--~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~ 152 (385)
T 2bkw_A 76 ASNFILS-KAPNKNVLVVSTGTFSDRF--ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAV 152 (385)
T ss_dssp HHHHSCT-TCSCCEEEEECSSHHHHHH--HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTE
T ss_pred HHHHhcc-CCCCCeEEEEcCCcchHHH--HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCe
Confidence 9987511 147899877644 333332 1333455999999999 77888999999999986 7899999999999999
Q ss_pred ccChHHHHHHHHhc--CCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCc-ccccc------
Q 040741 212 IQPMEEIGQICKEF--KIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRI-RVEPL------ 281 (457)
Q Consensus 212 ~~~l~~i~~l~~~~--~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~-~~~~~------ 281 (457)
+.|+++|.++|++| |+++|+|++|+.|..++++..+++|++++|+|| ++|+.|+|+++++++.++ ++.+.
T Consensus 153 ~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~ 232 (385)
T 2bkw_A 153 LSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVH 232 (385)
T ss_dssp ECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCS
T ss_pred EcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCC
Confidence 99999999999999 999999999999888777777789999999999 677889999999886554 44210
Q ss_pred ccCC------------ccccccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-hhcCCCeEEeCCC-
Q 040741 282 INGG------------GQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGI-KEKLDGVVVNGSM- 346 (457)
Q Consensus 282 ~~~~------------~~~~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~- 346 (457)
..++ ....+.+.++++...+.++.++++.+.+. ++++.++.+++++++.+.| ++ + ++.+..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~-g~~~~~~~~ 310 (385)
T 2bkw_A 233 GYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG-L-QLTSVSRYP 310 (385)
T ss_dssp CSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-T-CCEESSCSS
T ss_pred ceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHh-c-CceecccCc
Confidence 0000 00011234688888888888899887654 8889999999999999999 88 6 78776422
Q ss_pred CC-cccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEe-cC---CCCCHHHH
Q 040741 347 ER-RYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG-IG---RFTTEAEV 419 (457)
Q Consensus 347 ~~-~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~-~~---~~~t~edi 419 (457)
.. ....++.+.++. ..++...| +||.+.+|..+. ...+.+||+ ++ ..++++|+
T Consensus 311 ~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~v~~g~~~~------------------~~~~~iRis~~~~~~~~~~~e~i 370 (385)
T 2bkw_A 311 SNMSAHGLTAVYVAD--PPDVIAFLKSHGVVIAGGIHKD------------------IGPKYIRIGHMGVTACNKNLPYM 370 (385)
T ss_dssp STTBCSSCEEEECSC--HHHHHHHHHHTTEECBCCCCTT------------------TGGGEEEECCCGGGTSSTTCTHH
T ss_pred ccccCCceEEEecCC--HHHHHHHHHHCCeEEeCCCCcc------------------cCCCEEEEEccccccccCCHHHH
Confidence 12 245666666653 55666666 689888775321 123799999 65 24689999
Q ss_pred HHHHHHHHHHHHHH
Q 040741 420 DRAIELTVKQVEKL 433 (457)
Q Consensus 420 d~~~~~l~~~~~~~ 433 (457)
++++++|+++++++
T Consensus 371 ~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 371 KNCFDLIKLALQRK 384 (385)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
No 35
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=1.4e-32 Score=269.66 Aligned_cols=318 Identities=16% Similarity=0.107 Sum_probs=250.7
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS 134 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a 134 (457)
.+.|+|+.+.+. ++++++.+++.+.+.....+| .....++++.+++++|++++++++|+|+|+|++++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~ 100 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSSVETEIYP-----------DGWASSLRKEVADFYQLEEEELIFTAGVDELIELL 100 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCBSCCCBC---------------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHHHhhcCC-----------CcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHH
Confidence 467888887665 678999999988764332222 23567899999999999888999999999999999
Q ss_pred HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741 135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP 214 (457)
Q Consensus 135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~ 214 (457)
++++. ++|++|+++.+.|.++...++.. |.+++.++.+.++.+|++++++++++++++|++++++||+|.+.|
T Consensus 101 ~~~~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~ 173 (363)
T 3ffh_A 101 TRVLL----DTTTNTVMATPTFVQYRQNALIE---GAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIE 173 (363)
T ss_dssp HHHHC----STTCEEEEEESSCHHHHHHHHHH---TCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHc----cCCCEEEEcCCChHHHHHHHHHc---CCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcC
Confidence 99987 89999999999999988887766 999999999888899999999999999999999999999999999
Q ss_pred hHHHHHHHHhc--CCcEEEehhhhcCCC---c--cc-CCCCcccEEEeccccccCCCCc--eEEEEecCCCccccccccC
Q 040741 215 MEEIGQICKEF--KIPFHTDAAQALGKI---P--VD-VEKWNVSLMSLSGHKIYGPKGV--GALYMRRRPRIRVEPLING 284 (457)
Q Consensus 215 l~~i~~l~~~~--~v~li~D~a~~~g~~---~--~~-~~~~~~Di~~~s~~K~~g~~G~--G~l~~~~~~~~~~~~~~~~ 284 (457)
++++.++++.+ |+++|+|++|+.... . .. ....+.++++.|++|.+|++|. |+++++++..+++.....
T Consensus 174 ~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~- 252 (363)
T 3ffh_A 174 LADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRP- 252 (363)
T ss_dssp HHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCC-
Confidence 99999998888 999999999984321 1 11 1122455888999998886664 999998766655544332
Q ss_pred CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccch
Q 040741 285 GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGE 364 (457)
Q Consensus 285 ~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (457)
..+++.....++..+++.. +.+++..++.+++++++.+.|++ ++++.+..+. ..++.+.++. +..
T Consensus 253 --------~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~----~~~~~~~~~~-~~~ 317 (363)
T 3ffh_A 253 --------PFNTTSIGQKLAIEAIKDQ-AFIGECRTSNANGIKQYEAFAKR-FEKVKLYPAN----GNFVLIDLGI-EAG 317 (363)
T ss_dssp --------SCCCBHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHH-CTTCEECCCC----SSEEEEECSS-CHH
T ss_pred --------CCCCCHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHhh-CCCceECCCC----CeEEEEECCC-CHH
Confidence 2356777777777777632 45788889999999999999998 7888876432 3445555553 566
Q ss_pred HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741 365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ 429 (457)
Q Consensus 365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~ 429 (457)
++...| +||.+.+|..+.. .+++||+++ +++|+++++++|+++
T Consensus 318 ~~~~~l~~~gi~v~~g~~~~~-------------------~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 318 TIFSYLEKNGYITRSGAALGF-------------------PTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp HHHHHHHHTTEECEETTTTTC-------------------TTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEEeCccCCC-------------------CCeEEEECC---CHHHHHHHHHHHHHh
Confidence 676666 6999988865421 279999987 799999999999875
No 36
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.1e-32 Score=270.65 Aligned_cols=317 Identities=14% Similarity=0.075 Sum_probs=250.5
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS 134 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a 134 (457)
.+.|+|+.+.+. ++++++.+++.+.+....++|.. ...++++.+++++|++++++++|+|+|+|++++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~ 98 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANKAHLYPDD-----------SMIELKSTLAQKYKVQNENIIIGAGSDQVIEFA 98 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCT-----------TCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCC-----------ChHHHHHHHHHHhCCCcceEEECCCHHHHHHHH
Confidence 567899877655 68899999999998755444332 124889999999999888999999999999999
Q ss_pred HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC-CCCCCCCHHHHHHhcCCCceEEEEecccccccccc
Q 040741 135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV-GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ 213 (457)
Q Consensus 135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~-~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~ 213 (457)
++++. ++|++|++..+.|.++...++.. |.+++.++. +.++ +|++++++++++++++|++++++||+|.+.
T Consensus 99 ~~~l~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~ 170 (365)
T 3get_A 99 IHSKL----NSKNAFLQAGVTFAMYEIYAKQC---GAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECL 170 (365)
T ss_dssp HHHHC----CTTCEEEECSSCCTHHHHHHHHH---TCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCC
T ss_pred HHHHh----CCCCEEEEeCCChHHHHHHHHHc---CCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCc
Confidence 99987 89999999999999998887776 999999998 5677 999999999999999999999999999999
Q ss_pred ChHHHHHHHH--hcCCcEEEehhhhcCC------CcccC----CCCcccEEEeccccccCCCC--ceEEEEecCCCcccc
Q 040741 214 PMEEIGQICK--EFKIPFHTDAAQALGK------IPVDV----EKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVE 279 (457)
Q Consensus 214 ~l~~i~~l~~--~~~v~li~D~a~~~g~------~~~~~----~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~ 279 (457)
|++++.++++ ++|+++|+|++|+.+. .+.+. ...+.++++.|++|.+|.+| +|+++++++..+++.
T Consensus 171 ~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 250 (365)
T 3get_A 171 DASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFY 250 (365)
T ss_dssp CHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHH
Confidence 9988888888 6799999999998322 22221 12356789999999877554 899999776655554
Q ss_pred ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741 280 PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA 359 (457)
Q Consensus 280 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (457)
..... .+++.....++..+++.. +.+++..++++++++++.+.|++ + ++.+..+. ..++.+.++
T Consensus 251 ~~~~~---------~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~----~~~~~~~~~ 314 (365)
T 3get_A 251 KLRAP---------FNVSNLALKAAVAAMDDD-EFTEKTLENNFSQMELYKEFAKK-H-NIKIIDSY----TNFITYFFD 314 (365)
T ss_dssp HHSCT---------TCSCHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHH-T-TCEECCCS----SSEEEEECS
T ss_pred HhcCC---------CCcCHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHh-C-CCEECCCC----CeEEEEECC
Confidence 43321 246777777777777642 45788899999999999999999 5 77765432 344555665
Q ss_pred cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741 360 YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 360 ~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~ 430 (457)
..+..++...| +||.+.+|..|. .+++||+++ +++|+++++++|++++
T Consensus 315 ~~~~~~~~~~l~~~gi~v~~g~~~~--------------------~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 315 EKNSTDLSEKLLKKGIIIRNLKSYG--------------------LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp SSCHHHHHHHHHTTTEECEECGGGT--------------------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCEEEEECccCC--------------------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 43566676666 699999887542 289999987 7999999999998875
No 37
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=100.00 E-value=1.7e-31 Score=270.00 Aligned_cols=348 Identities=15% Similarity=0.022 Sum_probs=255.6
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCc-----EEEeCChHHHHHHHHHHhhhh
Q 040741 67 TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKE-----IIFTSGATESNNVSIKGVMHF 141 (457)
Q Consensus 67 ~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~-----i~~t~g~T~a~~~al~~~~~~ 141 (457)
++.++.+.+++.+.+.....++.. .....+...++++++++++|+++++ +++|+|||+|+.+++.++...
T Consensus 52 ~~~~~~v~e~~~~a~~~~~~~~~~-----~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~ 126 (452)
T 2dgk_A 52 TWDDENVHKLMDLSINKNWIDKEE-----YPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWR 126 (452)
T ss_dssp CCCCHHHHHHHHHTTTCBTTCTTT-----CHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccCCCChhh-----ChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHH
Confidence 466788999888887543333221 2345567788999999999998765 999999999999999887632
Q ss_pred hc----CCC-----CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741 142 YK----DKK-----RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211 (457)
Q Consensus 142 ~~----~~g-----~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G~ 211 (457)
+. .+| ++|+++. .|.++..+++.+ |++++.++++. ++.+|+++|+++|+++|++|++++++|++|.
T Consensus 127 ~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~---G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~ 202 (452)
T 2dgk_A 127 WRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYW---DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGN 202 (452)
T ss_dssp HHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHT---TCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCB
T ss_pred HHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHc---CceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcc
Confidence 11 133 6899999 999999888776 99999999886 7899999999999999999999999999999
Q ss_pred ccChHHHHHHHHhc------CCcEEEehhhhcCCC-------cccCCCCcccEEEeccccc-cCCCCceEEEEecC-CC-
Q 040741 212 IQPMEEIGQICKEF------KIPFHTDAAQALGKI-------PVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRR-PR- 275 (457)
Q Consensus 212 ~~~l~~i~~l~~~~------~v~li~D~a~~~g~~-------~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~-~~- 275 (457)
+.|+++|.++|+++ |+++|+|+||+.+.. +.++...++|++++++||+ ++|.|+|+++++++ .+
T Consensus 203 ~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~ 282 (452)
T 2dgk_A 203 YEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALP 282 (452)
T ss_dssp BCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSC
T ss_pred cCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHH
Confidence 99999999999996 999999999987643 2233334799999999994 57888999999764 22
Q ss_pred cccc--ccccCCccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC-Cccc
Q 040741 276 IRVE--PLINGGGQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME-RRYI 351 (457)
Q Consensus 276 ~~~~--~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~ 351 (457)
..+. +...++........++.+.....++.+++..+ .++++++.++..++++++.+.|.+ ++++.++.+.. ....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~~~ 361 (452)
T 2dgk_A 283 QELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK-LGPYEFICTGRPDEGI 361 (452)
T ss_dssp GGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSEEEEEECCTTTBS
T ss_pred HHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEecCCCCCCCe
Confidence 2221 22222211010012344443445555555543 346889999999999999999999 88898875321 1235
Q ss_pred ceEEEEEccc-----cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741 352 GNLNLSFAYV-----EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE 424 (457)
Q Consensus 352 ~~~~~~~~~~-----~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~ 424 (457)
+++.|.++.. +..++...| +|+.+... +.+.. ......+||+++..+|++|+|++++
T Consensus 362 ~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~--~~~~~--------------~~~~~~lRis~~~~~t~e~id~li~ 425 (452)
T 2dgk_A 362 PAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAF--TLGGE--------------ATDIVVMRIMCRRGFEMDFAELLLE 425 (452)
T ss_dssp SEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEE--ECSTT--------------CTTCEEEEEECCTTCCHHHHHHHHH
T ss_pred EEEEEEecCcccccCCHHHHHHHHHhcCCeeeee--eCCcc--------------cCCeEEEEEEecCCCCHHHHHHHHH
Confidence 6677777642 235677766 57655431 11110 0123699999999999999999999
Q ss_pred HHHHHHHHHHhcChhH
Q 040741 425 LTVKQVEKLREMSPLY 440 (457)
Q Consensus 425 ~l~~~~~~~~~~~~~~ 440 (457)
.|+++++++++..+.+
T Consensus 426 ~l~~~~~~~~~~~~~~ 441 (452)
T 2dgk_A 426 DYKASLKYLSDHPKLQ 441 (452)
T ss_dssp HHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHhCCCCC
Confidence 9999999998877766
No 38
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=100.00 E-value=2.2e-31 Score=272.12 Aligned_cols=350 Identities=14% Similarity=0.058 Sum_probs=259.8
Q ss_pred EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CCc---EEEeCChHHHHHHH
Q 040741 60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--PKE---IIFTSGATESNNVS 134 (457)
Q Consensus 60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~---i~~t~g~T~a~~~a 134 (457)
++....++++++.+.+++.+.+...+.++.. .....+...++++++++++|++ +++ .++|+|||+|+.++
T Consensus 59 ~l~s~~t~~~~~~v~~~l~~~~~~~~~~~~~-----~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a 133 (502)
T 3hbx_A 59 NLASFVTTWMEPECDKLIMSSINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLA 133 (502)
T ss_dssp BTTCCSCCCCCHHHHHHHHHTTTCBTTCTTT-----CHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHH
T ss_pred eeccccCCCCCHHHHHHHHHHhccCCCChhc-----ChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHH
Confidence 4444445788999999999988765544332 2234567778999999999997 443 45799999999999
Q ss_pred HHHhhhhhc----CCCC-----EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEec
Q 040741 135 IKGVMHFYK----DKKR-----HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMA 204 (457)
Q Consensus 135 l~~~~~~~~----~~g~-----~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~ 204 (457)
+.++...+. .+|+ +|+++...|.++..+++.+ |++++.++++.+ +.+|+++|+++|+++|++|++++
T Consensus 134 ~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~ 210 (502)
T 3hbx_A 134 GLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYF---EVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAIL 210 (502)
T ss_dssp HHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHT---TCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEB
T ss_pred HHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHc---CceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEec
Confidence 988764211 1254 8999999999999988877 999999998865 89999999999999999999999
Q ss_pred cccccccccChHHHHHHHHhc------CCcEEEehhhhcCC-------CcccCCCCcccEEEeccccc-cCCCCceEEEE
Q 040741 205 VNNEIGVIQPMEEIGQICKEF------KIPFHTDAAQALGK-------IPVDVEKWNVSLMSLSGHKI-YGPKGVGALYM 270 (457)
Q Consensus 205 ~~~~~G~~~~l~~i~~l~~~~------~v~li~D~a~~~g~-------~~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~ 270 (457)
++|++|.+.|+++|.++|+++ |+++|+|+||+.+. .+.++...++|++++|+||+ ++|.|+|++++
T Consensus 211 ~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~ 290 (502)
T 3hbx_A 211 GSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 290 (502)
T ss_dssp SCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEE
T ss_pred CCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEE
Confidence 999999999999999999999 99999999998443 23344445799999999995 47889999998
Q ss_pred ecC-CCccc---cccccCCccccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC
Q 040741 271 RRR-PRIRV---EPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGS 345 (457)
Q Consensus 271 ~~~-~~~~~---~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 345 (457)
+++ .+... .+...++........++.+...+.++..++..+. +++.++.++..++++++.+.|.+ ++++.++.+
T Consensus 291 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~ 369 (502)
T 3hbx_A 291 RNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK-TERFNIVSK 369 (502)
T ss_dssp SSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEEECSC
T ss_pred eCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeC
Confidence 764 22221 1122222221111123444445666666666553 46889999999999999999999 888998764
Q ss_pred CCCcccceEEEEEcc---ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHH
Q 040741 346 MERRYIGNLNLSFAY---VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD 420 (457)
Q Consensus 346 ~~~~~~~~~~~~~~~---~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid 420 (457)
. ...+++.|.++. .+..++...| +|+.+..... + ........+||+++..+++||+|
T Consensus 370 ~--~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~--p--------------~~~~~~~~lRisv~~~~t~edid 431 (502)
T 3hbx_A 370 D--EGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTM--P--------------PNAQHITVLRVVIREDFSRTLAE 431 (502)
T ss_dssp S--SSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEEC--C--------------TTCTTCEEEEEECCTTCCHHHHH
T ss_pred C--CCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccC--C--------------cccCCceEEEEEeCCCCCHHHHH
Confidence 1 125667777754 2334677777 5776643211 1 00112368999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 040741 421 RAIELTVKQVEKLREM 436 (457)
Q Consensus 421 ~~~~~l~~~~~~~~~~ 436 (457)
.+++.|+++++++++.
T Consensus 432 ~li~~L~~~l~~l~~~ 447 (502)
T 3hbx_A 432 RLVIDIEKVMRELDEL 447 (502)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999988764
No 39
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=2.2e-32 Score=267.30 Aligned_cols=320 Identities=13% Similarity=0.119 Sum_probs=250.4
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNV 133 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~ 133 (457)
..+.++|+.+.+. ++++++.+++.+.+.....+| .....++++++++++|++++++++|+|+|+|+++
T Consensus 15 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~ 83 (354)
T 3ly1_A 15 TDNPIRINFNENPLGMSPKAQAAARDAVVKANRYA-----------KNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRA 83 (354)
T ss_dssp SSSCEECSSCCCSSCCCHHHHHHHHHTGGGTTSCC-----------HHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHH
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHHHhhCcCCC-----------CCchHHHHHHHHHHhCCChHHEEEeCChHHHHHH
Confidence 4567888877665 688999999999886432221 2467899999999999988899999999999999
Q ss_pred HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC--CCceEEEEecccccccc
Q 040741 134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR--PDTGLISVMAVNNEIGV 211 (457)
Q Consensus 134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~--~~t~li~i~~~~~~~G~ 211 (457)
+++++. ++|++|++..+.|.++...++.. |.+++.++.+.++.+|+++++++++ +++++|++++++||+|.
T Consensus 84 ~~~~l~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~ 156 (354)
T 3ly1_A 84 AIEAYA----SLEAQLVIPELTYGDGEHFAKIA---GMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGT 156 (354)
T ss_dssp HHHHHC----CTTCEEEEESSSCTHHHHHHHHT---TCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCC
T ss_pred HHHHHh----CCCCeEEECCCCchHHHHHHHHc---CCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCC
Confidence 999987 89999999999999988777655 9999999998788999999999998 78999999999999999
Q ss_pred ccChHHHHHHHHh--cCCcEEEehhhhcCCCcc---c----CCCC-cccEEEeccccccCCCC--ceEEEEecCCCcccc
Q 040741 212 IQPMEEIGQICKE--FKIPFHTDAAQALGKIPV---D----VEKW-NVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVE 279 (457)
Q Consensus 212 ~~~l~~i~~l~~~--~~v~li~D~a~~~g~~~~---~----~~~~-~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~ 279 (457)
+.|.+++.++++. +|+++|+|++|+.....- . .... +.++++.|++|.+|.+| +|+++++++..+++.
T Consensus 157 ~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~ 236 (354)
T 3ly1_A 157 ITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMG 236 (354)
T ss_dssp CCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHG
T ss_pred CcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHH
Confidence 9998888888777 999999999998543221 1 1122 45689999999887444 899999876655554
Q ss_pred ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741 280 PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA 359 (457)
Q Consensus 280 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (457)
..... ++++.....++.++++.. +.+++..++++++++++.+.|++ + ++.+..+ .+.++.+.++
T Consensus 237 ~~~~~---------~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~-~~~~~~~----~~~~~~~~~~ 300 (354)
T 3ly1_A 237 RYVAG---------EKINFSGVDAALASMNDS-AFITYSKKSNDVSRQILLKALED-L-KLPYLPS----EGNFVFHQLV 300 (354)
T ss_dssp GGTTC---------SCCCHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCC----CSSEEEEECS
T ss_pred HhcCC---------CCCCHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHH-C-CCeECCC----CceEEEEECC
Confidence 43321 367777777777776643 45788889999999999999998 4 6555432 1344555555
Q ss_pred cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 360 YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 360 ~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
. +..++...| +||.+. |.+|. ..+++||+++ +++|+++++++|++++++
T Consensus 301 ~-~~~~~~~~l~~~gi~v~-g~~~~-------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 301 V-PLKDYQTHMADAGVLIG-RAFPP-------------------ADNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp S-CHHHHHHHHHHTTEECC-CCCTT-------------------CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred C-CHHHHHHHHHHCCEEEe-ecCCC-------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 3 556666666 689887 65432 1389999987 689999999999998763
No 40
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=1.9e-32 Score=269.24 Aligned_cols=320 Identities=15% Similarity=0.133 Sum_probs=251.0
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhc--cCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHH
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTSGATESN 131 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g~T~a~ 131 (457)
.+.|+|+.+.+. ++++++.+++.+.+... .+++. ....++++++++++|+ +++++++|+|+|+|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----------~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~ 98 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-----------PSSEALRAKLKEVMQVPAGMEVLLGNGSDEII 98 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-----------CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-----------CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHH
Confidence 467888877665 67899999999988742 22211 1357899999999999 777899999999999
Q ss_pred HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccc
Q 040741 132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIG 210 (457)
Q Consensus 132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G 210 (457)
+++++++. ++|++|++..+.|.++...++.. |.+++.++.+.++.+|++++++++++ ++++|++++++||+|
T Consensus 99 ~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG 171 (367)
T 3euc_A 99 SMLALAAA----RPGAKVMAPVPGFVMYAMSAQFA---GLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTG 171 (367)
T ss_dssp HHHHHHTC----CTTCEEEEEESCSCCSCHHHHTT---TCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTC
T ss_pred HHHHHHHc----CCCCEEEEcCCCHHHHHHHHHHc---CCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCC
Confidence 99999987 89999999999999988776655 99999999998888999999999988 899999999999999
Q ss_pred cccC---hHHHHHHHHhc--CCcEEEehhhhcCCC---cccCCCCcccEEEeccccccCCCC--ceEEEEecCCCccccc
Q 040741 211 VIQP---MEEIGQICKEF--KIPFHTDAAQALGKI---PVDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEP 280 (457)
Q Consensus 211 ~~~~---l~~i~~l~~~~--~v~li~D~a~~~g~~---~~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~ 280 (457)
.+.| +++|+++|++| |+++|+|++|+.... .......+.++++.|++|. +.+| +|+++++++..+++..
T Consensus 172 ~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~ 250 (367)
T 3euc_A 172 NLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDK 250 (367)
T ss_dssp CCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGG
T ss_pred CCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHHH
Confidence 9976 67788889999 999999999974221 1122334567889999997 5444 7999998766555544
Q ss_pred cccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc
Q 040741 281 LINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY 360 (457)
Q Consensus 281 ~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (457)
... ..+.+...+.++..+++. .+.+++..++.+++++++.+.|++ +|++.+.... ..++.+.++
T Consensus 251 ~~~---------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~----~~~~~~~~~- 314 (367)
T 3euc_A 251 VRP---------PYNVNVLTEATALFALEH-VAVLDEQAAQLRAERSRVAEGMAA-HGGVTVFPSA----ANFLLARVP- 314 (367)
T ss_dssp GCC---------SSCCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHT-STTCEECCCS----SSEEEEECS-
T ss_pred hCC---------CCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCcEECCCC----CeEEEEECC-
Confidence 332 225677777777777766 445788999999999999999999 8888865421 344555554
Q ss_pred ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741 361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE 431 (457)
Q Consensus 361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~ 431 (457)
+..++...| +||.+.+|..|.. ...++|||+++ +++|+++++++|+++++
T Consensus 315 -~~~~l~~~l~~~gi~v~~~~~~~~-----------------~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 315 -DAAQTFDRLLARKVLIKNVSKMHP-----------------LLANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp -CHHHHHHHHHTTTEECEECGGGCG-----------------GGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred -CHHHHHHHHHHCCeEEEECCccCC-----------------CCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 566666666 6999998876532 12389999987 79999999999998753
No 41
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=1.6e-32 Score=271.74 Aligned_cols=337 Identities=11% Similarity=0.063 Sum_probs=254.5
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHH
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATESN 131 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a~ 131 (457)
..++|.|..+.+. +.++++.+++.+.+.+.. +.|+....+..+++++.+++.+| ++++++++|+|+|+|+
T Consensus 26 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~ 98 (391)
T 3dzz_A 26 KEKELPMWIAEMDFKIAPEIMASMEEKLKVAA-------FGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAI 98 (391)
T ss_dssp CTTCEECCSSCCSSCCCHHHHHHHHHHHTTCC-------CCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhcCc-------CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHH
Confidence 3467888877655 678999999999886421 11111134677788888888888 5677899999999999
Q ss_pred HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CC--CCCCHHHHHHhcC-CCceEEEEecccc
Q 040741 132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-AD--GIVNLDELRAAIR-PDTGLISVMAVNN 207 (457)
Q Consensus 132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~--~~~d~~~le~~i~-~~t~li~i~~~~~ 207 (457)
+++++++. ++|++|+++.+.|.++...++.. |.+++.++.+ .+ +.+|+++++++++ +++++|++++++|
T Consensus 99 ~~~~~~l~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~n 171 (391)
T 3dzz_A 99 SAMVRQFT----SPGDQILVQEPVYNMFYSVIEGN---GRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHN 171 (391)
T ss_dssp HHHHHHHS----CTTCEEEECSSCCHHHHHHHHHT---TCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBT
T ss_pred HHHHHHhC----CCCCeEEECCCCcHHHHHHHHHc---CCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCC
Confidence 99999987 89999999999999988877665 9999999885 22 2489999999998 7899999999999
Q ss_pred cccccc---ChHHHHHHHHhcCCcEEEehhhhcCC----CcccCCCCc---cc--EEEeccccccCCCC--ceEEEEe-c
Q 040741 208 EIGVIQ---PMEEIGQICKEFKIPFHTDAAQALGK----IPVDVEKWN---VS--LMSLSGHKIYGPKG--VGALYMR-R 272 (457)
Q Consensus 208 ~~G~~~---~l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~~~~~---~D--i~~~s~~K~~g~~G--~G~l~~~-~ 272 (457)
|+|.+. ++++|.++|++||+++|+|++|+.+. ....+.... .| +++.|+||.+|.+| +|+++++ +
T Consensus 172 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~ 251 (391)
T 3dzz_A 172 PIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNP 251 (391)
T ss_dssp TTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSH
T ss_pred CCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCH
Confidence 999994 58899999999999999999998532 222332222 45 99999999776444 8999987 5
Q ss_pred CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741 273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG 352 (457)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 352 (457)
+..+++...... ....+++...+.++..+++...+.+++..++.+++++++.+.|++.+|++.+..+.. ..
T Consensus 252 ~~~~~~~~~~~~------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~ 322 (391)
T 3dzz_A 252 DLRARAEESFFL------AGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNA---SY 322 (391)
T ss_dssp HHHHHHHHHHHH------HTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCB---SS
T ss_pred HHHHHHHHHHHh------hccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCc---eE
Confidence 554544433211 112356667777777777665555788899999999999999987567888765432 23
Q ss_pred eEEEEEcc--ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741 353 NLNLSFAY--VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV 427 (457)
Q Consensus 353 ~~~~~~~~--~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~ 427 (457)
.+.+.++. .+..++...| +||.+.+|..|... ..+++||+++ ++++++++++++|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRis~~--~~~~~i~~~l~~l~ 383 (391)
T 3dzz_A 323 LAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGN-----------------GHEFVRINLA--CPKELVIDGMQRLK 383 (391)
T ss_dssp EEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTT-----------------GGGEEEEECC--SCHHHHHHHHHHHH
T ss_pred EEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHH
Confidence 33455553 4566777666 48999998876531 2389999998 58999999999999
Q ss_pred HHHHHH
Q 040741 428 KQVEKL 433 (457)
Q Consensus 428 ~~~~~~ 433 (457)
++++++
T Consensus 384 ~~l~~~ 389 (391)
T 3dzz_A 384 QGVLNL 389 (391)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 998764
No 42
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=2.2e-32 Score=270.22 Aligned_cols=332 Identities=19% Similarity=0.191 Sum_probs=251.3
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS 134 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a 134 (457)
.+.++|+.+.+. +.++.+.+++.+.+.. .+. |+. .....++++.++++++++++++++|+|||+|+.++
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~------y~~--~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~ 94 (381)
T 1v2d_A 25 LGAVNLGQGFPSNPPPPFLLEAVRRALGR--QDQ------YAP--PAGLPALREALAEEFAVEPESVVVTSGATEALYVL 94 (381)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHHHTTT--SCS------CCC--TTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHH--hcC------CCC--CCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHH
Confidence 356778776665 5789999999998764 111 111 12356899999999999888899999999999999
Q ss_pred HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC---CCCCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741 135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG---ADGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211 (457)
Q Consensus 135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~---~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~ 211 (457)
++++. ++|++|++..+.|.++...++.. |.+++.++.+ .++.+|++++++++++++++|++++++||+|.
T Consensus 95 ~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~ 167 (381)
T 1v2d_A 95 LQSLV----GPGDEVVVLEPFFDVYLPDAFLA---GAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGL 167 (381)
T ss_dssp HHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCC
T ss_pred HHHhC----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCC
Confidence 99987 89999999999999988766554 9999999986 45778999999999999999999999999999
Q ss_pred ccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCC--CCcccEEEeccccccCCCC--ceEEEEecCCCcccccc
Q 040741 212 IQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVE--KWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPL 281 (457)
Q Consensus 212 ~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~--~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~ 281 (457)
+.| +++|.++|++||+++|+|++|+.+.. +.++. ..+.|+++.|+||.+|++| +|+++++++..+.+...
T Consensus 168 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~ 247 (381)
T 1v2d_A 168 VFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGM 247 (381)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHHH
Confidence 987 88999999999999999999985432 22222 3468999999999888666 89999987766555433
Q ss_pred ccCCccccccccCCCChhHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741 282 INGGGQERGIRSGTLPTPLIVGFGSACEIA--KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA 359 (457)
Q Consensus 282 ~~~~~~~~~~~~~t~~~~~~~al~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (457)
.. ....+.+.....++..+++.. .+.+++..++++++++++.+.|++ .++.+..+.. +.++.+.++
T Consensus 248 ~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~---~~~~~~~~~ 315 (381)
T 1v2d_A 248 RQ-------WTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA--MGLRVYVPEG---TYFLMAELP 315 (381)
T ss_dssp HH-------HHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH--TTCCEECCSB---SSEEEEECT
T ss_pred Hh-------hcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHH--CCCEecCCCc---ceEEEEecC
Confidence 21 112356677777777777765 345788899999999999999998 4777765421 334445554
Q ss_pred cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 040741 360 YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM 436 (457)
Q Consensus 360 ~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~ 436 (457)
..+ +...+ +||.+.+|..|... ....+++||+++. +++++++++++|++++++.++.
T Consensus 316 ~~~---~~~~l~~~gi~v~~g~~~~~~---------------~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~~ 374 (381)
T 1v2d_A 316 GWD---AFRLVEEARVALIPASAFYLE---------------DPPKDLFRFAFCK--TEEELHLALERLGRVVNSPREA 374 (381)
T ss_dssp TCC---HHHHHHHTCEECEEGGGGCSS---------------SCCTTEEEEECCS--CHHHHHHHHHHHHHHC------
T ss_pred hHh---HHHHHHhCCEEEecchHhCCC---------------CCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhcccc
Confidence 332 44333 69999988766431 1123799999987 8999999999999998876543
No 43
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=3.8e-32 Score=269.16 Aligned_cols=332 Identities=11% Similarity=0.148 Sum_probs=253.5
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHH
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATESNN 132 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a~~ 132 (457)
.+.+.|..+.+. +.++++.+++.+.+.+.. +.++....+..+++++.+++++| ++++++++|+|+|+|++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~ 104 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEI-------YGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAIS 104 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCC-------CCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHH
Confidence 567888877666 678999999999886421 11222235788889999999999 67788999999999999
Q ss_pred HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCC--CCCHHHHHHhcCCCceEEEEeccccc
Q 040741 133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADG--IVNLDELRAAIRPDTGLISVMAVNNE 208 (457)
Q Consensus 133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~--~~d~~~le~~i~~~t~li~i~~~~~~ 208 (457)
++++++. ++|++|++..+.|.++...++.. |.+++.++.+ .++ .+|++++++++++ +++|++++++||
T Consensus 105 ~~~~~~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~np 176 (391)
T 4dq6_A 105 LLINELT----KANDKIMIQEPVYSPFNSVVKNN---NRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNP 176 (391)
T ss_dssp HHHHHHS----CTTCEEEECSSCCTHHHHHHHHT---TCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTT
T ss_pred HHHHHhC----CCCCEEEEcCCCCHHHHHHHHHc---CCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCC
Confidence 9999987 89999999999999998877665 9999999887 333 4899999999998 999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccCCCCc-----ccEEEeccccccCCCC--ceEEEEec-C
Q 040741 209 IGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDVEKWN-----VSLMSLSGHKIYGPKG--VGALYMRR-R 273 (457)
Q Consensus 209 ~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~~~~-----~Di~~~s~~K~~g~~G--~G~l~~~~-~ 273 (457)
+|.+.| +++|.++|++||+++|+|++|+.... ...+.... ..+++.|++|.+|.+| +|++++++ +
T Consensus 177 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 256 (391)
T 4dq6_A 177 VGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEK 256 (391)
T ss_dssp TTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHH
T ss_pred CCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHH
Confidence 999955 78899999999999999999986322 22232222 3388999999776444 89999876 4
Q ss_pred CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741 274 PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN 353 (457)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 353 (457)
..+++...... ...++++...+.++.++++...+.+++..++.+++++++.+.|++.+|++.+..+.. ...
T Consensus 257 ~~~~~~~~~~~------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~ 327 (391)
T 4dq6_A 257 DYKLLDDAFTR------IDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEG---TYL 327 (391)
T ss_dssp HHHHHHHHHHH------TTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSB---SSE
T ss_pred HHHHHHHHHHh------hcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCc---cEE
Confidence 44444433221 123467777777777777764445788899999999999999987468888875432 223
Q ss_pred EEEEEc--cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741 354 LNLSFA--YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK 428 (457)
Q Consensus 354 ~~~~~~--~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~ 428 (457)
+.+.++ +.+..++...| + ||.+.+|..|... ..+++||+++ ++++++++++++|++
T Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRis~~--~~~~~i~~~l~~l~~ 388 (391)
T 4dq6_A 328 LWVDFSALGLSDEELESILVQKGKVALNQGNSFGIG-----------------GSGYQRINLA--CPRSMLEEALIRIKN 388 (391)
T ss_dssp EEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTT-----------------CTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred EEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCC-----------------CCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 335555 34666777766 5 9999998776431 2389999998 589999999999998
Q ss_pred HH
Q 040741 429 QV 430 (457)
Q Consensus 429 ~~ 430 (457)
++
T Consensus 389 ~l 390 (391)
T 4dq6_A 389 AI 390 (391)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 44
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=3.4e-31 Score=265.78 Aligned_cols=332 Identities=16% Similarity=0.148 Sum_probs=254.0
Q ss_pred cEEecCCCCC----CCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741 58 PLYLDMQATT----PVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN 132 (457)
Q Consensus 58 ~i~l~~~~~~----~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~ 132 (457)
.-|+|+.++. ..++++.+++.+.+.... +++.+ .+..| ..+...++++.+++++|.+ +.+++++|++|+.
T Consensus 64 ~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~-~~~~G--~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~ 138 (427)
T 2w8t_A 64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGS-RMLNG--TFHDHMEVEQALRDFYGTT--GAIVFSTGYMANL 138 (427)
T ss_dssp EEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSC-TTTTC--CCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHH
T ss_pred ceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCccc-ccccC--CcHHHHHHHHHHHHHhCCC--ceEEecCcHHHHH
Confidence 3455655554 367999999999887621 22221 12222 2367889999999999985 4777888899999
Q ss_pred HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC----CceEEEEeccccc
Q 040741 133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP----DTGLISVMAVNNE 208 (457)
Q Consensus 133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~----~t~li~i~~~~~~ 208 (457)
.+++++. ++|+.|+++.++|.++..+++.. |.+++.++. +|+++|++++++ ++++|++++++||
T Consensus 139 ~al~~l~----~~gd~vl~~~~~h~~~~~~~~~~---g~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~ 206 (427)
T 2w8t_A 139 GIISTLA----GKGEYVILDADSHASIYDGCQQG---NAEIVRFRH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSM 206 (427)
T ss_dssp HHHHHHS----CTTCEEEEETTCCHHHHHHHHHS---CSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESEETT
T ss_pred HHHHHhc----CCCCEEEECCcccHHHHHHHHHc---CCeeEEeCC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCC
Confidence 9999887 89999999999999999887665 999988874 499999999876 7899999999999
Q ss_pred cccccChHHHHHHHHhcCCcEEEehhhhcCCCc---------ccCCCCcccEEEeccccccCCCCceEEEEecCCCcccc
Q 040741 209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP---------VDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVE 279 (457)
Q Consensus 209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~---------~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~ 279 (457)
+|.+.|+++|.++|++||+++|+|++|+.+... +++. .++|++++|++|.+|++| |+++++++.++.+.
T Consensus 207 tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g~~g-G~v~~~~~l~~~l~ 284 (427)
T 2w8t_A 207 LGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVG-GFVVSNHPKFEAVR 284 (427)
T ss_dssp TTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSCC-EEEEECCTTGGGGG
T ss_pred CCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhhhccCC-CEEEeCHHHHHHHH
Confidence 999999999999999999999999999977654 3332 267999999999889887 99999887776665
Q ss_pred ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741 280 PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA 359 (457)
Q Consensus 280 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (457)
.....+ ...++.++..++++.++++.+. .+++..++++++++++.+.|++ + ++.+.++. ...+++.+.++
T Consensus 285 ~~~~~~-----~~~~~~~~~~~aa~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~--~~~~~~~~~~~ 354 (427)
T 2w8t_A 285 LACRPY-----IFTASLPPSVVATATTSIRKLM-TAHEKRERLWSNARALHGGLKA-M-GFRLGTET--CDSAIVAVMLE 354 (427)
T ss_dssp GTCHHH-----HSSCCCCHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHH-H-TCEESCSS--CCSSEEEEEES
T ss_pred Hhcccc-----cccCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH-c-CCcccCCC--CCCCEEEEEEC
Confidence 432110 1234677777777777887754 4678899999999999999998 5 77776332 12455666665
Q ss_pred c-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 360 Y-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 360 ~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
. .....+...| +||.+.++..+.. ..+.+++||+++..++++|+++++++|+++++++.
T Consensus 355 ~~~~~~~l~~~L~~~Gi~v~~~~~~~~----------------~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~ 416 (427)
T 2w8t_A 355 DQEQAAMMWQALLDGGLYVNMARPPAT----------------PAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVG 416 (427)
T ss_dssp SHHHHHHHHHHHHHTTEECEEECTTTS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCeEEeeeCCCCC----------------CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 3 2345566655 6999988765432 11237999999999999999999999999988764
No 45
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=7.3e-32 Score=267.16 Aligned_cols=332 Identities=13% Similarity=0.121 Sum_probs=249.3
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCc-EEEeCCh
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKE-IIFTSGA 127 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~-i~~t~g~ 127 (457)
.+.++|+.+.+. +.++++.+++.+.+.... . .| +. .....++++.+++++ | +++++ +++|+||
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~----~y--~~--~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~ 96 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDKGL-T----HY--GP--NIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGA 96 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHTTC-C----SC--CC--TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESST
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhCCC-C----CC--CC--CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCCh
Confidence 467888887776 578999999999886421 0 11 11 012345566666665 8 46778 9999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEecc
Q 040741 128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAV 205 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~ 205 (457)
|+|+.++++++. ++|++|++..+.|+++...++.. |.+++.++.+. ++.+|++++++++++++++|+++++
T Consensus 97 ~~a~~~~~~~~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~ 169 (389)
T 1gd9_A 97 NQAFLMGLSAFL----KDGEEVLIPTPAFVSYAPAVILA---GGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSP 169 (389)
T ss_dssp THHHHHHHTTTC----CTTCEEEEEESCCTTHHHHHHHH---TCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESS
T ss_pred HHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHC---CCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECC
Confidence 999999999887 88999999999999998887766 99999999874 3568999999999989999999999
Q ss_pred ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccCCC----CcccEEEeccccccCCCC--ceEEEEec
Q 040741 206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDVEK----WNVSLMSLSGHKIYGPKG--VGALYMRR 272 (457)
Q Consensus 206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~~----~~~Di~~~s~~K~~g~~G--~G~l~~~~ 272 (457)
+||+|.+.| +++|.++|++||+++|+|++|+.+.. ...+.. .+.|+++.|+||.+|++| +|++++++
T Consensus 170 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 249 (389)
T 1gd9_A 170 CNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS 249 (389)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECH
Confidence 999999986 88999999999999999999986543 112221 357899999999888666 79999987
Q ss_pred CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcc
Q 040741 273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRY 350 (457)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 350 (457)
+..+++.....++ ..+.+.....++..+++.... .+++..++++++++++.+.|++ + ++.+..+..
T Consensus 250 ~~~~~l~~~~~~~-------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--- 317 (389)
T 1gd9_A 250 WIIERMVKFQMYN-------ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE-M-GLPTVKPKG--- 317 (389)
T ss_dssp HHHHHHHHHHTTT-------TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCCB---
T ss_pred HHHHHHHHHHhhh-------ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCe---
Confidence 6666555443321 125566666666667765444 5788889999999999999998 5 666654321
Q ss_pred cceEEEEEc--cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741 351 IGNLNLSFA--YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL 425 (457)
Q Consensus 351 ~~~~~~~~~--~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~ 425 (457)
+.++.+.++ +.+..++...| +||.+.+|..|.. ...+++||+++. +++++++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-----------------~~~~~iRi~~~~--~~~~i~~~l~~ 378 (389)
T 1gd9_A 318 AFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGK-----------------AGEGYVRISYAT--AYEKLEEAMDR 378 (389)
T ss_dssp TTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCG-----------------GGTTBEEEECCS--CHHHHHHHHHH
T ss_pred eeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCeEEEEecC--CHHHHHHHHHH
Confidence 223333444 23555666655 5899998876532 123799999985 79999999999
Q ss_pred HHHHHHHHH
Q 040741 426 TVKQVEKLR 434 (457)
Q Consensus 426 l~~~~~~~~ 434 (457)
|++++++.+
T Consensus 379 l~~~~~~~~ 387 (389)
T 1gd9_A 379 MERVLKERK 387 (389)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcc
Confidence 999987643
No 46
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=5.7e-32 Score=267.84 Aligned_cols=335 Identities=15% Similarity=0.083 Sum_probs=243.1
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChHHHH
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA--SPKEIIFTSGATESN 131 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~i~~t~g~T~a~ 131 (457)
+.+.++|+.+.+. +.++.+.+++.+.+..... .+.......+..+.+.+.+.+.+|. +++++++|+|||+|+
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-----~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 103 (388)
T 1j32_A 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKT-----RYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCC-----SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCC-----CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence 3567788777665 5679999999988754210 0110111223444444444444464 567899999999999
Q ss_pred HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEecccccc
Q 040741 132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAVNNEI 209 (457)
Q Consensus 132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~~~~~ 209 (457)
+++++++. ++|++|+++.+.|+++...++.. |.+++.++.+. ++.+|++++++++++++++|++++++||+
T Consensus 104 ~~~~~~~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~npt 176 (388)
T 1j32_A 104 FNLMLAMI----EPGDEVIIPAPFWVSYPEMVKLA---EGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPT 176 (388)
T ss_dssp HHHHHHHC----CTTCEEEEESSCCTHHHHHHHHT---TCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred HHHHHHhc----CCCCEEEEcCCCChhHHHHHHHc---CCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCC
Confidence 99999987 89999999999999988776655 99999999874 56789999999999999999999999999
Q ss_pred ccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc----cc---CCC--CcccEEEeccccccCCCC--ceEEEEecCCC
Q 040741 210 GVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP----VD---VEK--WNVSLMSLSGHKIYGPKG--VGALYMRRRPR 275 (457)
Q Consensus 210 G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~----~~---~~~--~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~ 275 (457)
|.+.| +++|.++|++||+++|+|++|+.+... .. +.. .+.|+++.|+||.+|++| +|+++++++..
T Consensus 177 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~ 256 (388)
T 1j32_A 177 GMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLV 256 (388)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHH
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHHHH
Confidence 99976 889999999999999999999864321 11 111 357899999999888777 89999987765
Q ss_pred ccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEE
Q 040741 276 IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN 355 (457)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 355 (457)
+++.....++. ...+.....++..+++...+.+++..++++++++++.+.|++ ++++.+..+.. +.++.
T Consensus 257 ~~l~~~~~~~~-------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~---~~~~~ 325 (388)
T 1j32_A 257 KAATKIQGHST-------SNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA-MPGLECPKPDG---AFYMF 325 (388)
T ss_dssp HHHHHHHHTTT-------CSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT-CTTCBCCCCCB---TTEEC
T ss_pred HHHHHHHhhcc-------cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhh-CCCCcccCCCe---eEEEE
Confidence 55544332211 133444444444555433334778888999999999999998 78887665322 22222
Q ss_pred EEEc--cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741 356 LSFA--YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 356 ~~~~--~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~ 430 (457)
+.++ +.+..++...| +||.+.+|..|.. .+++||+++ ++++++++++++|++++
T Consensus 326 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~i~~~~~~l~~~l 384 (388)
T 1j32_A 326 PSIAKTGRSSLDFCSELLDQHQVATVPGAAFGA-------------------DDCIRLSYA--TDLDTIKRGMERLEKFL 384 (388)
T ss_dssp CBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC-------------------TTBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHhCCEEEeChhhhCC-------------------CCcEEEEec--CCHHHHHHHHHHHHHHH
Confidence 3333 23456676665 4999988865532 278999997 58999999999999998
Q ss_pred HHH
Q 040741 431 EKL 433 (457)
Q Consensus 431 ~~~ 433 (457)
+++
T Consensus 385 ~~~ 387 (388)
T 1j32_A 385 HGI 387 (388)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 47
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=1.4e-31 Score=268.63 Aligned_cols=335 Identities=15% Similarity=0.115 Sum_probs=250.9
Q ss_pred CCcEEecCCCCC-----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC-----CCCCcEEEeC
Q 040741 56 GRPLYLDMQATT-----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG-----ASPKEIIFTS 125 (457)
Q Consensus 56 ~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g-----~~~~~i~~t~ 125 (457)
.+.|+|+.+.+. ++++++.+++.+.+.....+ +|.......++++.++++++ ++++++++|+
T Consensus 54 ~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~--------~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~ 125 (427)
T 3dyd_A 54 KTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN--------GYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTS 125 (427)
T ss_dssp SCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS--------SCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEES
T ss_pred CCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC--------CCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEec
Confidence 456899887754 68899999999998753111 11111346789999999998 6778899999
Q ss_pred ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEEEe
Q 040741 126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLISVM 203 (457)
Q Consensus 126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~i~ 203 (457)
|||+|++++++++. ++|++|+++.+.|..+...++.. |.+++.++.+ .++.+|++++++++++++++|+++
T Consensus 126 g~t~al~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~ 198 (427)
T 3dyd_A 126 GCSQAIDLCLAVLA----NPGQNILVPRPGFSLYKTLAESM---GIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVN 198 (427)
T ss_dssp SHHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEE
T ss_pred CcHHHHHHHHHHhc----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEE
Confidence 99999999999988 89999999999999888776655 9999999876 356789999999999999999999
Q ss_pred ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----CcccCCCCcc---cEEEeccccccCCCC--ceEEEEe
Q 040741 204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----IPVDVEKWNV---SLMSLSGHKIYGPKG--VGALYMR 271 (457)
Q Consensus 204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~~~~~~---Di~~~s~~K~~g~~G--~G~l~~~ 271 (457)
+++||+|.+.| +++|+++|+++|+++|+|++|+... ....+...+. .+++.|++|.||.+| +|+++++
T Consensus 199 ~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~ 278 (427)
T 3dyd_A 199 NPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIH 278 (427)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEec
Confidence 99999999999 9999999999999999999998532 2222222222 266789999877666 8999998
Q ss_pred cCCCc---cccccccCCccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC
Q 040741 272 RRPRI---RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME 347 (457)
Q Consensus 272 ~~~~~---~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 347 (457)
++... .+...+... .....+++.....++.++++.. .+.+++..++++++++++.+.|++ +|++.+..+..
T Consensus 279 ~~~~~~~~~i~~~l~~~----~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~p~~ 353 (427)
T 3dyd_A 279 DRRDIFGNEIRDGLVKL----SQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA-IPGLRPVRPSG 353 (427)
T ss_dssp CSTTSSHHHHHHHHHHH----HHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-STTEEEECCSB
T ss_pred CcchhhHHHHHHHHHHH----HhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCCe
Confidence 64211 111111000 0012367777777777777642 345788889999999999999999 88988765422
Q ss_pred CcccceEEEEEcc------ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741 348 RRYIGNLNLSFAY------VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE 418 (457)
Q Consensus 348 ~~~~~~~~~~~~~------~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed 418 (457)
..++.+.++. .+..++...| +||.+.+|..|.. .+++||+++ +++++
T Consensus 354 ---g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~-------------------~~~iRis~~--~~~e~ 409 (427)
T 3dyd_A 354 ---AMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY-------------------PNFIRVVIT--VPEVM 409 (427)
T ss_dssp ---TTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEEEESC--SCHHH
T ss_pred ---eEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC-------------------CCeEEEEEC--CCHHH
Confidence 3344445541 2345565554 5999999876542 279999987 68999
Q ss_pred HHHHHHHHHHHHHHHH
Q 040741 419 VDRAIELTVKQVEKLR 434 (457)
Q Consensus 419 id~~~~~l~~~~~~~~ 434 (457)
|++++++|++++++++
T Consensus 410 i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 410 MLEACSRIQEFCEQHY 425 (427)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998765
No 48
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=3.8e-32 Score=268.40 Aligned_cols=335 Identities=13% Similarity=0.129 Sum_probs=250.6
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCE
Q 040741 69 VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRH 148 (457)
Q Consensus 69 ~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~ 148 (457)
+++++++++.+. +++|.. +..+....+.++++++.+++++|++ +.++||+|||+|+++++.. . .+|++
T Consensus 9 ~~~~~~~~~~~~----~~~~~~--~h~~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~-~----~~gd~ 76 (379)
T 3ke3_A 9 IDPNGLLEYSVV----YTDRAL--NHMSKAFQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQ-L----TIDED 76 (379)
T ss_dssp CSTTSCCCCCSS----CCTTSC--CTTSHHHHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHH-H----CTTCE
T ss_pred CCHHHHHHHHHh----ccCCCC--CCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHh-C----CCCCe
Confidence 344444444332 455532 3335666789999999999999987 6799999999999998754 3 58999
Q ss_pred EEEcCCCCcchHHHHHHHHhcC--cEEEEEeCCCC---------CCCCHHHHHHhcC-CCceEEEEeccccccccccC--
Q 040741 149 VITTQTEHKCVLDSCRHLQQEG--FEITYLPVGAD---------GIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQP-- 214 (457)
Q Consensus 149 vi~~~~~h~~~~~~~~~~~~~G--~~v~~v~~~~~---------~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~~-- 214 (457)
||+....|.+.... ..+...| .++++++.+.+ +.+|+++++++++ +++++|++++++|++|.+.|
T Consensus 77 vi~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~ 155 (379)
T 3ke3_A 77 CLIIRNGWFSYRWT-QILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEE 155 (379)
T ss_dssp EEEEECSHHHHHHH-HHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHH
T ss_pred EEEEeCCchhHHHH-HHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHH
Confidence 99998888775422 2333335 48888886532 2589999999995 58999999999999999999
Q ss_pred -hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccccc-CC------
Q 040741 215 -MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLIN-GG------ 285 (457)
Q Consensus 215 -l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~-~~------ 285 (457)
+++|.++|++||+++|+|++++ |..++++..+++|++++|+|| +.||.|+|+++++++..+++.+... +.
T Consensus 156 ~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 234 (379)
T 3ke3_A 156 YIKALSEAVHSVGGLLVIDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQ 234 (379)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeccc-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHH
Confidence 9999999999999999999999 888888877789999999999 5568889999999876655543211 11
Q ss_pred ------cccccc--ccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741 286 ------GQERGI--RSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356 (457)
Q Consensus 286 ------~~~~~~--~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (457)
.++.+. ..+++++..++++.++++.+.+. ++++.++.+++++++++.|.+ + ++.+..++..+.+.+..+
T Consensus 235 ~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~-g~~~~~~~~~~~~~i~~~ 312 (379)
T 3ke3_A 235 WLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTD-K-GIESVAAEGFEAPGVVVS 312 (379)
T ss_dssp HHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSBCTTCBCSSEEEE
T ss_pred HHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCEecCCccccCceEEEE
Confidence 011111 23589999999999999988764 899999999999999999999 5 777766544444444444
Q ss_pred EEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 357 SFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 357 ~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
.....+. .....| +||.+.+|..|+.+. ....+.|||+++.++|++||++++++|+++++++.
T Consensus 313 ~~~~~~~-~~~~~L~~~Gi~v~~g~~~~~~~--------------~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 313 YTERDDM-HKGSAFAEAGLQIAAGVPLKVGE--------------PDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp ECSCHHH-HSSHHHHHTTCCCEECCCCSSCC--------------CTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ccCCcch-HHHHHHHHCCeEEeCCccccccc--------------cCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 4332211 113333 699988887665310 12247999999999999999999999999998775
No 49
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=8.3e-32 Score=265.93 Aligned_cols=332 Identities=11% Similarity=0.103 Sum_probs=249.9
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHH
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATESN 131 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a~ 131 (457)
.+++.|..+.+. +.++++.+++.+.+... .+++. ...+..+++++.+++.+| ++++++++|+|+|+|+
T Consensus 24 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--------~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~ 95 (383)
T 3kax_A 24 EELIHAWIADMDFEVPQPIQTALKKRIEHPIFGYTL--------PPENIGDIICNWTKKQYNWDIQKEWIVFSAGIVPAL 95 (383)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSCCCCCCC--------CCTTHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred CCeeecccccCCCCCCHHHHHHHHHHHhcCCCCCCC--------CCHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHH
Confidence 467777776655 67899999999998752 22211 123577888899999988 6677899999999999
Q ss_pred HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC---CCCCHHHHHHhcCCCceEEEEeccccc
Q 040741 132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD---GIVNLDELRAAIRPDTGLISVMAVNNE 208 (457)
Q Consensus 132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~---~~~d~~~le~~i~~~t~li~i~~~~~~ 208 (457)
+++++++. ++|++|++..+.|.++...++.. |.+++.++.+.+ +.+|++++++++++++++|++++++||
T Consensus 96 ~~~~~~l~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~np 168 (383)
T 3kax_A 96 STSIQAFT----KENESVLVQPPIYPPFFEMVTTN---NRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSPHNP 168 (383)
T ss_dssp HHHHHHHC----CTTCEEEECSSCCHHHHHHHHHT---TCEEEECCCEEETTEEECCHHHHHHHHTTTCCEEEEESSBTT
T ss_pred HHHHHHhC----CCCCEEEEcCCCcHHHHHHHHHc---CCEEEeccceecCCcEEEcHHHHHHHhCcCCeEEEEeCCCCC
Confidence 99999987 89999999999999988777665 999999988643 248999999999889999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccCCCC-----cccEEEeccccccCCCC--ceEEEEe-cC
Q 040741 209 IGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDVEKW-----NVSLMSLSGHKIYGPKG--VGALYMR-RR 273 (457)
Q Consensus 209 ~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~~~-----~~Di~~~s~~K~~g~~G--~G~l~~~-~~ 273 (457)
+|.+.| +++|.++|++||+++|+|++|+.... ...+... +.++++.|++|.+|++| +|+++++ ++
T Consensus 169 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~ 248 (383)
T 3kax_A 169 IGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQASIIIIPNEK 248 (383)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHH
T ss_pred CCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhheEEEeCCHH
Confidence 999988 55666779999999999999986322 2222222 34588999999777444 7999884 44
Q ss_pred CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741 274 PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN 353 (457)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 353 (457)
..+++......+ ..++++...+.++.++++...+.+++..++.+++++++.+.|++.+|++.+..+.. ...
T Consensus 249 ~~~~~~~~~~~~------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~ 319 (383)
T 3kax_A 249 LRQAFTSIQYRQ------GFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPEG---SFL 319 (383)
T ss_dssp HHHHHHHHHHHT------TCCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCSB---SSE
T ss_pred HHHHHHHHHhhc------ccCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCc---eEE
Confidence 444444332211 12367777777777777654445788889999999999999987467888765422 223
Q ss_pred EEEEEcc--ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741 354 LNLSFAY--VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK 428 (457)
Q Consensus 354 ~~~~~~~--~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~ 428 (457)
+.+.++. .+..++...| +||.+.+|..|... ..+++||+++ ++++++++++++|++
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRi~~~--~~~~~i~~~l~~l~~ 380 (383)
T 3kax_A 320 LWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLG-----------------GEEHIGINIG--CPRSVLEEILNRLRH 380 (383)
T ss_dssp EEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCTT-----------------CTTEEEEECS--SCHHHHHHHHHHHHH
T ss_pred EEEEccccCCCHHHHHHHHHhhCCEEeECchhhcCC-----------------CCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 3355553 4566777666 48999998876531 2389999998 489999999999988
Q ss_pred HH
Q 040741 429 QV 430 (457)
Q Consensus 429 ~~ 430 (457)
++
T Consensus 381 ~l 382 (383)
T 3kax_A 381 TF 382 (383)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 50
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=100.00 E-value=9.4e-31 Score=268.78 Aligned_cols=317 Identities=21% Similarity=0.268 Sum_probs=244.3
Q ss_pred HHHHHHHHHHHHHHHhCCCC--CcE--EEeCChHHHHHHHHHHhhhhhc----CCCCEEEEcCCCCcchHHHHHHHHhcC
Q 040741 99 SEVAVETARSQIADLIGASP--KEI--IFTSGATESNNVSIKGVMHFYK----DKKRHVITTQTEHKCVLDSCRHLQQEG 170 (457)
Q Consensus 99 ~~~~~~~~~~~la~~~g~~~--~~i--~~t~g~T~a~~~al~~~~~~~~----~~g~~vi~~~~~h~~~~~~~~~~~~~G 170 (457)
......++++++++++|.++ +++ ++|+|||+|+.++++++..... .++++|+++.+.|.++..+++.. |
T Consensus 137 ~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~---G 213 (514)
T 3mad_A 137 TAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYF---G 213 (514)
T ss_dssp HHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHH---T
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHc---C
Confidence 34566678899999999874 556 9999999999999999873210 11289999999999999988887 9
Q ss_pred cEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCC----------
Q 040741 171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI---------- 240 (457)
Q Consensus 171 ~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~---------- 240 (457)
++++.++.+.++.+|+++|+++|++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+..
T Consensus 214 ~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~ 293 (514)
T 3mad_A 214 IKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPV 293 (514)
T ss_dssp CEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCC
T ss_pred CeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCC
Confidence 9999999998899999999999999999999999999999999999999999999999999999875432
Q ss_pred -cccCCCCcccEEEeccccc-cCCCCceEEEEecCCCccccccc----cCCccccccccCCCChhHHHHHHHHHHHHHH-
Q 040741 241 -PVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRRPRIRVEPLI----NGGGQERGIRSGTLPTPLIVGFGSACEIAKK- 313 (457)
Q Consensus 241 -~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~~~~----~~~~~~~~~~~~t~~~~~~~al~~al~~~~~- 313 (457)
+++....++|++++|+||+ +|+.|+|+++++++...+..... .++........|+.+.....++.+++..+..
T Consensus 294 ~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~ 373 (514)
T 3mad_A 294 PPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE 373 (514)
T ss_dssp CCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHH
Confidence 3455566899999999995 78888999999876443322111 1111111223456666667777777776544
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHH
Q 040741 314 EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYV 391 (457)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~ 391 (457)
++++..++..++++++.+.|++ ++++.+..++ .+++.+.....+..++...| +||.+ +|..+
T Consensus 374 ~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~Gi~v-~g~~~---------- 437 (514)
T 3mad_A 374 GYLDATRRILQAADRLKAGVRA-IPSLKILGDP----LWVIAVASDELNIYQVMEEMAGRGWRL-NGLHR---------- 437 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-STTCEESSCC----SSEEEEECSSSCHHHHHHHHHTTTCBC-EEETT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCCeEEeCCC----eEEEEEeCCCCCHHHHHHHHHhcCCEe-ccCCC----------
Confidence 5889999999999999999999 8899888654 23445554545566777766 57766 33221
Q ss_pred HHHcCCCccCCCCeEEEecCCC-CCHHHHHHHHHHHHHHHHHHHhc-------ChhHHHHHh
Q 040741 392 LRALGVDEDMAHTSIRFGIGRF-TTEAEVDRAIELTVKQVEKLREM-------SPLYEMVKE 445 (457)
Q Consensus 392 l~~~g~~~~~~~~~iRi~~~~~-~t~edid~~~~~l~~~~~~~~~~-------~~~~~~~~~ 445 (457)
.+.+|++++.. ++++++++++++|+++++++++. .++|.|.+.
T Consensus 438 -----------~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~~~~~~~~~~~yg~~~~ 488 (514)
T 3mad_A 438 -----------PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHPEKATGMAPVYGMAAA 488 (514)
T ss_dssp -----------TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHCTTCCCTTHHHHHHHHH
T ss_pred -----------CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCceehhhhccc
Confidence 16899999844 56799999999999999987643 356666654
No 51
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=7.5e-32 Score=265.30 Aligned_cols=322 Identities=16% Similarity=0.160 Sum_probs=243.1
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCCh
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEIIFTSGA 127 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i~~t~g~ 127 (457)
..++++|+.+.+. +.++++.+++.+.+.... + .|+. .....++++.++++++ ++++++++|+||
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~------~y~~--~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 98 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGK-T------HYTD--SRGILELREKISELYKDKYKADIIPDNIIITGGS 98 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHHTTC-C------SCCC--TTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHHcCc-c------CCCC--CCCCHHHHHHHHHHHHHHhCCCCChhhEEECCCh
Confidence 3567888887776 368999999999886421 0 1110 1224456667776664 567789999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccc
Q 040741 128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNN 207 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~ 207 (457)
|+|+.++++++. ++|++|++..+.|+++...++.. |.+++.++ +|++++++++++++++|++++++|
T Consensus 99 ~~a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~------~d~~~l~~~l~~~~~~v~~~~p~n 165 (370)
T 2z61_A 99 SLGLFFALSSII----DDGDEVLIQNPCYPCYKNFIRFL---GAKPVFCD------FTVESLEEALSDKTKAIIINSPSN 165 (370)
T ss_dssp HHHHHHHHHHHC----CTTCEEEEESSCCTHHHHHHHHT---TCEEEEEC------SSHHHHHHHCCSSEEEEEEESSCT
T ss_pred HHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEeC------CCHHHHHHhcccCceEEEEcCCCC
Confidence 999999999987 89999999999999998877655 99999887 689999999998999999999999
Q ss_pred ccccccChHHHHHHHHhcCCcEEEehhhhcCCC---cccCC----CCcccEEEeccccccCCCC--ceEEEEecCCCccc
Q 040741 208 EIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI---PVDVE----KWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRV 278 (457)
Q Consensus 208 ~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~----~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~ 278 (457)
|+|.+.|++ |.++|++||+++|+|++|+.+.. +.++. ..+.|+++.|+||.+|++| +|+++++++..+++
T Consensus 166 ptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~ 244 (370)
T 2z61_A 166 PLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAI 244 (370)
T ss_dssp TTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHH
T ss_pred CcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHHHH
Confidence 999999999 99999999999999999986543 22222 2367899999999888666 89999988666555
Q ss_pred cccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEE
Q 040741 279 EPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS 357 (457)
Q Consensus 279 ~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 357 (457)
.....++ .++.+...+.++.++++. ....+++..++++++++++.+.|.+ + ++.+..+.. +.++.+.
T Consensus 245 ~~~~~~~-------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~ 312 (370)
T 2z61_A 245 LKLQQNL-------FISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKD-F-GWEVNNPIG---AYYVFPN 312 (370)
T ss_dssp HHHHHHH-------TSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCBCCCCCB---TTEECCB
T ss_pred HHHHhhc-------ccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCc---ceEEEEe
Confidence 4433221 235666767766667765 4456788889999999999999998 5 666654321 2233334
Q ss_pred EccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741 358 FAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE 431 (457)
Q Consensus 358 ~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~ 431 (457)
++. +..++...| +||.+.+|..|.. ...+++||+++ ++++++++++++|+++++
T Consensus 313 ~~~-~~~~~~~~l~~~~gi~v~~g~~f~~-----------------~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 313 IGE-DGREFAYKLLKEKFVALTPGIGFGS-----------------KGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp CSS-CHHHHHHHHHHHHCEECEEGGGGCG-----------------GGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred cCC-CHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 443 456666655 4999998876531 12379999999 589999999999998764
No 52
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=1.3e-31 Score=265.62 Aligned_cols=335 Identities=15% Similarity=0.143 Sum_probs=242.9
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCh
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSGA 127 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g~ 127 (457)
..++|+|+.+.+. ++++++.+++.+.+.... .+|.......++++.+++++ | ++++++++|+||
T Consensus 30 g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~---------~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~ 100 (391)
T 3h14_A 30 GRRIIHMEVGQPGTGAPRGAVEALAKSLETDA---------LGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGS 100 (391)
T ss_dssp TCCCEECCCSSCSSCSCHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC---------CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecCh
Confidence 4567888877666 568899999999875411 11222223456666666666 4 577889999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCCCceEEEEecc
Q 040741 128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRPDTGLISVMAV 205 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~~t~li~i~~~ 205 (457)
|+|++++++++. ++|++|++..+.|.++...++.. |.+++.++.+.+ ..+|+++++++ ++++|+++++
T Consensus 101 ~~al~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p 170 (391)
T 3h14_A 101 SGGFLLAFTALF----DSGDRVGIGAPGYPSYRQILRAL---GLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASP 170 (391)
T ss_dssp HHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESS
T ss_pred HHHHHHHHHHhc----CCCCEEEEcCCCCccHHHHHHHc---CCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCC
Confidence 999999999998 89999999999999988776655 999999998854 36799999877 7899999999
Q ss_pred ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCCC-CcccEEEeccccccCCCC--ceEEEEecCCCc
Q 040741 206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVEK-WNVSLMSLSGHKIYGPKG--VGALYMRRRPRI 276 (457)
Q Consensus 206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~ 276 (457)
+||+|.+.| +++|+++|++||+++|+|++|+.... +..... .+.++++.|++|.+|++| +|+++++++..+
T Consensus 171 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~ 250 (391)
T 3h14_A 171 ANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVR 250 (391)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGGHH
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHHHHH
Confidence 999999998 88899999999999999999984322 222222 245688899999887554 899999877655
Q ss_pred cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741 277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356 (457)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (457)
.+...... ...+++.....++.++++ ..+.+++..++++++++++.+.|++ ++...+.. +.. ..++.+
T Consensus 251 ~~~~~~~~-------~~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~-~~~--~~~~~~ 318 (391)
T 3h14_A 251 VVERIAQN-------MFICAPHASQVAALAALD-CDAELQANLDVYKANRKLMLERLPK-AGFTRIAP-PDG--AFYVYA 318 (391)
T ss_dssp HHHHHHHH-------TTCCCCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHH-HTCCCBCC-CCB--TTEEEE
T ss_pred HHHHHHhh-------hccCCCHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHH-cCCCcccC-CCe--eEEEEE
Confidence 55433321 223666666666666666 3446788899999999999999988 53332222 222 233444
Q ss_pred EEc--cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741 357 SFA--YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE 431 (457)
Q Consensus 357 ~~~--~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~ 431 (457)
.++ ..+..++...+ + ||.+.+|..|... ...++|||+++. +++++++++++|+++++
T Consensus 319 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~----------------~~~~~iRis~~~--~~~~i~~~l~~l~~~~~ 380 (391)
T 3h14_A 319 DVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPE----------------RGAGTLRFSYAR--ATADIEEGLDRLEAFMQ 380 (391)
T ss_dssp ECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTT----------------TGGGEEEEECCS--CHHHHHHHHHHHHHHHH
T ss_pred ecCccCCCHHHHHHHHHHHCCEEEcCchhhCCC----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 554 34566776664 3 9999999877541 123799999987 78999999999999998
Q ss_pred HHHhcCh
Q 040741 432 KLREMSP 438 (457)
Q Consensus 432 ~~~~~~~ 438 (457)
+.....+
T Consensus 381 ~~~~~~~ 387 (391)
T 3h14_A 381 ARGEGHH 387 (391)
T ss_dssp HC-----
T ss_pred Hhccccc
Confidence 7665544
No 53
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=100.00 E-value=7.9e-32 Score=266.71 Aligned_cols=327 Identities=16% Similarity=0.143 Sum_probs=239.7
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CC--CCCcEEEeCChH
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GA--SPKEIIFTSGAT 128 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~i~~t~g~T 128 (457)
.+.+.|+.+.+. +.++.+.+++.+.+..... .|... ....++++.+++++ |. +++++++|+|+|
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-----~y~~~----~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~ 101 (385)
T 1b5p_A 31 VDLVALTAGEPDFDTPEHVKEAARRALAQGKT-----KYAPP----AGIPELREALAEKFRRENGLSVTPEETIVTVGGS 101 (385)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTTCC-----SCCCT----TCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhcCCC-----CCCCC----CCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChH
Confidence 456788777665 5678999999888754210 11111 12334555555554 53 567899999999
Q ss_pred HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEeccc
Q 040741 129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAVN 206 (457)
Q Consensus 129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~~ 206 (457)
+|+++++.++. ++||+|+++.++|..+...++.. |.+++.++.+. ++.+|++++++++++++++|++++++
T Consensus 102 ~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~ 174 (385)
T 1b5p_A 102 QALFNLFQAIL----DPGDEVIVLSPYWVSYPEMVRFA---GGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPN 174 (385)
T ss_dssp HHHHHHHHHHC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSC
T ss_pred HHHHHHHHHhc----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCC
Confidence 99999999987 89999999999999988777655 99999999874 45789999999999999999999999
Q ss_pred cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCCCC--cccEEEeccccccCCCC--ceEEEEecCCCc
Q 040741 207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVEKW--NVSLMSLSGHKIYGPKG--VGALYMRRRPRI 276 (457)
Q Consensus 207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~~--~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~ 276 (457)
||||.+.| +++|+++|++||+++|+|++|+.... ...+... +.++++.|+||.+|++| +|+++++++.++
T Consensus 175 NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~ 254 (385)
T 1b5p_A 175 NPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIK 254 (385)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeCHHHHH
Confidence 99999987 88999999999999999999985432 1122222 56789999999988777 899999876655
Q ss_pred cccccccCCccccccccCCCChhHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741 277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI---AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN 353 (457)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 353 (457)
++.+....+ ..+.+.....++..+++. ..+.+++..++++++++++.+.|++ + ++.+..+.. ...
T Consensus 255 ~l~~~~~~~-------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~ 322 (385)
T 1b5p_A 255 AMASVSRQS-------TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA-L-GLKAVRPSG---AFY 322 (385)
T ss_dssp HHHHHHHTT-------TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCCSB---TTE
T ss_pred HHHHHHhhc-------cCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCe---eEE
Confidence 554433211 124455555555556653 3445788889999999999999998 5 666654321 223
Q ss_pred EEEEEc--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741 354 LNLSFA--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ 429 (457)
Q Consensus 354 ~~~~~~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~ 429 (457)
+...++ +.+..++...| +||.+.+|..|.. .+++||+++ ++++++++++++|+++
T Consensus 323 ~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~-------------------~~~iRis~~--~~~~~i~~~l~~l~~~ 381 (385)
T 1b5p_A 323 VLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAA-------------------FGHVRLSYA--TSEENLRKALERFARV 381 (385)
T ss_dssp EEEECTTTCSSHHHHHHHHHHTTEECEESGGGTC-------------------TTEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred EEEecCCCCCCHHHHHHHHHHCCeEEecccccCC-------------------CCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 333443 24556676666 6999999876521 279999998 6889999999998876
Q ss_pred HH
Q 040741 430 VE 431 (457)
Q Consensus 430 ~~ 431 (457)
++
T Consensus 382 l~ 383 (385)
T 1b5p_A 382 LG 383 (385)
T ss_dssp C-
T ss_pred Hh
Confidence 54
No 54
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7.7e-32 Score=269.11 Aligned_cols=351 Identities=18% Similarity=0.149 Sum_probs=247.2
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhCC--CCC-cEEEeCChHH
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIGA--SPK-EIIFTSGATE 129 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~-~i~~t~g~T~ 129 (457)
..+.++|+.+.+. +.++++.+++.+.+... .+++. .....+..+.+.+.+.+.+|. +++ ++++|+|||+
T Consensus 24 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~------~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~ 97 (411)
T 2o0r_A 24 RIGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPP------GPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATE 97 (411)
T ss_dssp TTTCEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCC------TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHH
T ss_pred cCCeeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHH
Confidence 3467888887766 57899999999998651 11111 111123333344444444474 566 8999999999
Q ss_pred HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC---CCCCCHHHHHHhcCCCceEEEEeccc
Q 040741 130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA---DGIVNLDELRAAIRPDTGLISVMAVN 206 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~---~~~~d~~~le~~i~~~t~li~i~~~~ 206 (457)
|+.++++++. ++|++|+++.+.|+++...++.. |.+++.++.+. ++.+|++++++++++++++|++++++
T Consensus 98 al~~~~~~~~----~~gd~Vl~~~~~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~ 170 (411)
T 2o0r_A 98 AIAAAVLGLV----EPGSEVLLIEPFYDSYSPVVAMA---GAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPH 170 (411)
T ss_dssp HHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSC
T ss_pred HHHHHHHHhc----CCCCEEEEeCCCcHhHHHHHHHc---CCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCC
Confidence 9999999987 89999999999999988776554 99999999864 35689999999999999999999999
Q ss_pred cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccC---C-CCcccEEEeccccccCCCC--ceEEEEecC
Q 040741 207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDV---E-KWNVSLMSLSGHKIYGPKG--VGALYMRRR 273 (457)
Q Consensus 207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~---~-~~~~Di~~~s~~K~~g~~G--~G~l~~~~~ 273 (457)
||+|.+.| +++|.++|++||+++|+|++|+.+.. +..+ . ..+.|+++.|++|.+|++| +|+++++++
T Consensus 171 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~ 250 (411)
T 2o0r_A 171 NPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAE 250 (411)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCHH
Confidence 99999988 58999999999999999999986432 1122 1 1467999999999888777 899999876
Q ss_pred CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741 274 PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN 353 (457)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 353 (457)
..+++...... ...+.+.....++..+++...+.+++..++++++++++.+.|++ + ++.+..+.. +.+
T Consensus 251 ~~~~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~ 318 (411)
T 2o0r_A 251 LIAGVRAAKQY-------LSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTE-I-GFAVHDSYG---TYF 318 (411)
T ss_dssp HHHHHHHHHHH-------HTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-H-TCEECCCCB---SSE
T ss_pred HHHHHHHHHhh-------ccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-c-CCEecCCCe---eEE
Confidence 65555433211 11244455556666677654455788889999999999999998 4 777765321 334
Q ss_pred EEEEEcc---ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741 354 LNLSFAY---VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV 427 (457)
Q Consensus 354 ~~~~~~~---~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~ 427 (457)
+.+.++. .+..++...| +||.+.+|..|.....+|+.++.. ...+++||+++. +++++++++++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~------~~~~~iRis~~~--~~e~i~~~~~~l~ 390 (411)
T 2o0r_A 319 LCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQAD------VWNHLVRFTFCK--RDDTLDEAIRRLS 390 (411)
T ss_dssp EEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------C------CGGGCEEEECCS--CHHHHHHHHHHHG
T ss_pred EEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCcccccccccc------CCCCeEEEEecC--CHHHHHHHHHHHH
Confidence 5566654 3455666654 499999988774432233333221 123789999974 7999999999999
Q ss_pred HHHHHHHhcCh
Q 040741 428 KQVEKLREMSP 438 (457)
Q Consensus 428 ~~~~~~~~~~~ 438 (457)
+++++.+..+|
T Consensus 391 ~~~~~~~~~~~ 401 (411)
T 2o0r_A 391 VLAERPATGVP 401 (411)
T ss_dssp GGGC-------
T ss_pred HHHhccCcCCC
Confidence 98876654443
No 55
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=2.6e-31 Score=264.05 Aligned_cols=332 Identities=17% Similarity=0.136 Sum_probs=248.1
Q ss_pred CcEEecCCCC-C-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741 57 RPLYLDMQAT-T-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS 134 (457)
Q Consensus 57 ~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a 134 (457)
.++.|..+.+ + +.++++.+++.+.+.... +... .+.+..+..+...++++.+++++|.+ ++++|+|||+|+.++
T Consensus 44 ~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~--~v~~~~ggt~a~~~~ 119 (398)
T 3a2b_A 44 RVLMFGSNSYLGLTTDTRIIKAAQDALEKYG-TGCA-GSRFLNGTLDIHVELEEKLSAYVGKE--AAILFSTGFQSNLGP 119 (398)
T ss_dssp EEEECSCSCTTCGGGCHHHHHHHHHHHHHHC-SCCC-SBTTTTCCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHH
T ss_pred eEEEeecccccCCCCCHHHHHHHHHHHHHcC-CCCC-CcCcccCCcHHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHH
Confidence 3444444433 3 278999999999886532 2111 11111222367889999999999974 699999999999999
Q ss_pred HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC----CceEEEEeccccccc
Q 040741 135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP----DTGLISVMAVNNEIG 210 (457)
Q Consensus 135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~----~t~li~i~~~~~~~G 210 (457)
++++. ++|+.|+++.++|+++..+++.. |.+++.++. +|++++++++++ ++++|++++++||+|
T Consensus 120 ~~~~~----~~gd~V~~~~p~~~~~~~~~~~~---g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG 187 (398)
T 3a2b_A 120 LSCLM----GRNDYILLDERDHASIIDGSRLS---FSKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEG 187 (398)
T ss_dssp HHHSS----CTTCEEEEETTCCHHHHHHHHHS---SSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTC
T ss_pred HHHHh----CCCCEEEECCccCHHHHHHHHHc---CCceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCC
Confidence 99987 89999999999999998877665 999999986 489999999876 789999999999999
Q ss_pred cccChHHHHHHHHhcCCcEEEehhhhcCCCc---ccCCC-----CcccEEEeccccccCCCCceEEEEecCCCccccccc
Q 040741 211 VIQPMEEIGQICKEFKIPFHTDAAQALGKIP---VDVEK-----WNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLI 282 (457)
Q Consensus 211 ~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~---~~~~~-----~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~ 282 (457)
.+.|+++|.++|++||+++|+|++|+.+... ..+.. .++|+++.|+||.+|+.| |+++++++.++++....
T Consensus 188 ~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~ 266 (398)
T 3a2b_A 188 DIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG-GFVAGDADVIDFLKHNA 266 (398)
T ss_dssp CBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC-EEEEECHHHHHHHHHHC
T ss_pred CccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC-cEEEeCHHHHHHHHHhc
Confidence 9999999999999999999999999866431 11111 136999999999999888 99999876655554321
Q ss_pred cCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-c
Q 040741 283 NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-V 361 (457)
Q Consensus 283 ~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 361 (457)
..+ ...+++++.+.+++..+++.. +.+++..++++++++++.+.|++ + ++.+..+ . ..++.+.++. .
T Consensus 267 ~~~-----~~~~~~~~~~~a~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~-~---g~~~~~~~~~~~ 334 (398)
T 3a2b_A 267 RSV-----MFSASMTPASVASTLKALEII-QNEPEHIEKLWKNTDYAKAQLLD-H-GFDLGAT-E---SPILPIFIRSNE 334 (398)
T ss_dssp HHH-----HSSBCCCHHHHHHHHHHHHHH-HHCTHHHHHHHHHHHHHHHHHHH-T-TCCBCSC-C---SSEEEEECCCHH
T ss_pred ccc-----eecCCCCHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHh-c-CCCcCCC-C---CCEEEEEcCCHH
Confidence 100 122355566665666777764 35678899999999999999998 5 6665532 1 3455555542 2
Q ss_pred cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
+..++...| +||.+.+|..|... ...+++||+++..++++++++++++|+++++++
T Consensus 335 ~~~~l~~~l~~~gi~v~~~~~~~~~----------------~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 335 KTFWVTKMLQDDGVFVNPVVSPAVP----------------AEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp HHHHHHHHHHHTTEECEEECTTTSC----------------GGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCcEEEeeCCCCCC----------------CCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 345566665 69999988765321 123799999999899999999999999998765
No 56
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=2.9e-32 Score=271.58 Aligned_cols=335 Identities=16% Similarity=0.137 Sum_probs=250.4
Q ss_pred CcEEecCCCCC--CCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--C-CcEEEeCChHH
Q 040741 57 RPLYLDMQATT--PVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETARSQIADLIGAS--P-KEIIFTSGATE 129 (457)
Q Consensus 57 ~~i~l~~~~~~--~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~-~~i~~t~g~T~ 129 (457)
.++.|..+... +.++++.+++.+.+.+.. +++. .....+..+++++++++++|.+ + +++++|+|||+
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~ 113 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTE------YRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQG 113 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCC------TTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCC------CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHH
Confidence 45777765444 678999999999886421 1111 1123467888999999999974 3 68999999999
Q ss_pred HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC------CCCCCCCHHHHHHhcCCCceEEEEe
Q 040741 130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV------GADGIVNLDELRAAIRPDTGLISVM 203 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~------~~~~~~d~~~le~~i~~~t~li~i~ 203 (457)
|++++++++. ++|++|+++.+.|.++...++.. |.+++.++. +.++.+|++++++++++++++|+++
T Consensus 114 a~~~~~~~l~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~ 186 (407)
T 3nra_A 114 ALFLAVAATV----ARGDKVAIVQPDYFANRKLVEFF---EGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFS 186 (407)
T ss_dssp HHHHHHHTTC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhC----CCCCEEEEcCCcccchHHHHHHc---CCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEc
Confidence 9999999987 89999999999999988877666 999999998 3667899999999999899999999
Q ss_pred ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccC-----CCCcccEEEeccccccCCCC--ceEEE
Q 040741 204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDV-----EKWNVSLMSLSGHKIYGPKG--VGALY 269 (457)
Q Consensus 204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~-----~~~~~Di~~~s~~K~~g~~G--~G~l~ 269 (457)
+++||+|.+.| +++|+++|++||+++|+|++|+.+.. ...+ ...+.++++.|++|.+|..| +|+++
T Consensus 187 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 266 (407)
T 3nra_A 187 NPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF 266 (407)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEE
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEE
Confidence 99999999999 99999999999999999999986322 1111 12456799999999887444 79999
Q ss_pred EecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCc
Q 040741 270 MRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERR 349 (457)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 349 (457)
++++..+.+...... ...+.+.....++..+++...+.+++..++.+++++++.+.|++ ++++.+..+..
T Consensus 267 ~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~-- 336 (407)
T 3nra_A 267 GSRAIIARMEKLQAI-------VSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRG-CEGVFARTPQA-- 336 (407)
T ss_dssp ECHHHHHHHHHHHHH-------HTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHT-STTCBCCCCSB--
T ss_pred cCHHHHHHHHHHHhh-------hccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-CCCceeccCCe--
Confidence 887665555443321 11244445555444444322234677888899999999999998 78887754322
Q ss_pred ccceEEEEEc--cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741 350 YIGNLNLSFA--YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE 424 (457)
Q Consensus 350 ~~~~~~~~~~--~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~ 424 (457)
..++.+.++ ..+..++...| +||.+.+|..|.+ ...++|||+++. ++++|+++++
T Consensus 337 -~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-----------------~~~~~iRis~~~--~~~~i~~~~~ 396 (407)
T 3nra_A 337 -GSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSP-----------------HTADSVRLNFSQ--DHEAAVAAAR 396 (407)
T ss_dssp -SSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCT-----------------TCTTBEEEECCS--CHHHHHHHHH
T ss_pred -eEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCEEEEEeCC--CHHHHHHHHH
Confidence 233333443 23556676666 3999999887753 123899999985 8999999999
Q ss_pred HHHHHHHHHH
Q 040741 425 LTVKQVEKLR 434 (457)
Q Consensus 425 ~l~~~~~~~~ 434 (457)
+|++++++++
T Consensus 397 ~l~~~~~~~~ 406 (407)
T 3nra_A 397 RIVTLVERYR 406 (407)
T ss_dssp HHHHHHHHHB
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 57
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=100.00 E-value=1.1e-30 Score=256.99 Aligned_cols=338 Identities=14% Similarity=0.096 Sum_probs=238.4
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh---hhhh
Q 040741 66 TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV---MHFY 142 (457)
Q Consensus 66 ~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~---~~~~ 142 (457)
.+++++++++++.+.+.+.+.+| .+...++++.+++++|.+ ++++++|||+|+.++++++ .
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~~~~~~--- 71 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLTQ-----------GKRSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSEFS--- 71 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCSS-----------SHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSCCC---
T ss_pred CCCCCHHHHHHHHHHHHcCcccC-----------ChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhcccC---
Confidence 56899999999999986533222 146789999999999986 6999999999999999998 5
Q ss_pred cCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHH
Q 040741 143 KDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQIC 222 (457)
Q Consensus 143 ~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~ 222 (457)
++|++|+++.++|+++..+++.. |+++++++.+.++.+|++++++++++++++|+++++ +|.+.|+++|.++|
T Consensus 72 -~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~ 144 (375)
T 2fnu_A 72 -ADRNEIITTPISFVATANMLLES---GYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLC 144 (375)
T ss_dssp -TTSCEEEECSSSCTHHHHHHHHT---TCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHH
T ss_pred -CCCCEEEECCCccHhHHHHHHHC---CCEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHH
Confidence 78999999999999999887765 999999999877789999999999999998888776 89999999999999
Q ss_pred HhcCCcEEEehhhhcCCCccc--CCCCcccEEEeccc--cccCCCCceEEEEe--cCCCccccccccCCcc---ccccc-
Q 040741 223 KEFKIPFHTDAAQALGKIPVD--VEKWNVSLMSLSGH--KIYGPKGVGALYMR--RRPRIRVEPLINGGGQ---ERGIR- 292 (457)
Q Consensus 223 ~~~~v~li~D~a~~~g~~~~~--~~~~~~Di~~~s~~--K~~g~~G~G~l~~~--~~~~~~~~~~~~~~~~---~~~~~- 292 (457)
++||+++|+|++|+.+..+.. +..++ |+.+.|++ |++|+ |+|+++++ ++..+++.+...++.. ...+.
T Consensus 145 ~~~~~~li~D~a~~~~~~~~~~~~~~~~-~i~~~s~s~~K~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (375)
T 2fnu_A 145 KKHSLSFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKPITT-AEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEV 222 (375)
T ss_dssp HHHTCEEEEECTTCTTCEETTEETTSSS-SEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEE
T ss_pred HHcCCEEEEECccccCCeECCeeccccC-CeEEEeCCCCCCccc-cCceEEEeCCHHHHHHHHHHHhcCCcccccccccc
Confidence 999999999999998865432 33222 55555555 98888 88999885 3344455444332220 00010
Q ss_pred --cCCC-ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC--CCcccceEEEEEcc--c-cch
Q 040741 293 --SGTL-PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM--ERRYIGNLNLSFAY--V-EGE 364 (457)
Q Consensus 293 --~~t~-~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~-~~~ 364 (457)
.+.. ....+.+.. ++. ..+.+++..++.+++++++.+.|.+ ++++.+..++ ....+..+.+.++. . +..
T Consensus 223 ~~~~~~~~~~~~~~a~-~~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (375)
T 2fnu_A 223 KSIGHNFRLNEIQSAL-GLS-QLKKAPFLMQKREEAALTYDRIFKD-NPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKK 299 (375)
T ss_dssp SSCCCBCCCCHHHHHH-HHH-HHTTHHHHHHHHHHHHHHHHHHHTT-CSSEEESGGGCSSCCCCSCEEEEECGGGGGGHH
T ss_pred ccccccCCCCHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCCCcceEEEEEEeCccccchHH
Confidence 1111 111221111 111 1245788889999999999999999 8899887642 11223334555653 2 456
Q ss_pred HHHhcc--cCeEecccCccCCCCCChhHHHHHcC---C--CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALG---V--DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g---~--~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
++...| +||.+.. .|.+....+.+.. .+. . ......+.|||+++..++++|+++++++|++++++++
T Consensus 300 ~l~~~L~~~gi~v~~--~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~ 373 (375)
T 2fnu_A 300 LILESLHKRGILAQV--HYKPIYQYQLYQQ-LFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESFK 373 (375)
T ss_dssp HHHHHHHHTTEECBC--CCCCGGGSHHHHH-HHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCccc--cccccccchhhhc-CCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 666666 6888773 3433211111110 000 0 0011236899999999999999999999999987653
No 58
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=4.1e-31 Score=262.83 Aligned_cols=332 Identities=16% Similarity=0.168 Sum_probs=248.8
Q ss_pred CcEEecCCCCCC----CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741 57 RPLYLDMQATTP----VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN 132 (457)
Q Consensus 57 ~~i~l~~~~~~~----~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~ 132 (457)
+..|+|+.++.+ .++++.+++.+.+.. ++++.+ .+.+.+...+...++++.+++++|++ +.+++++||+|+.
T Consensus 44 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~ 119 (401)
T 1fc4_A 44 GSHVINFCANNYLGLANHPDLIAAAKAGMDS-HGFGMA-SVRFICGTQDSHKELEQKLAAFLGME--DAILYSSCFDANG 119 (401)
T ss_dssp SCEEEECCCSCTTSCTTCHHHHHHHHHHHHH-HCSCCC-SCHHHHCCBHHHHHHHHHHHHHHTCS--EEEEESCHHHHHH
T ss_pred CccEEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCC-CCCcccCCcHHHHHHHHHHHHHhCCC--cEEEeCChHHHHH
Confidence 345667666553 389999999998865 333222 22333222467889999999999987 4566677899999
Q ss_pred HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC------CceEEEEeccc
Q 040741 133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP------DTGLISVMAVN 206 (457)
Q Consensus 133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~------~t~li~i~~~~ 206 (457)
.+++++. ++|+.|+++.++|++...+++ ..|.+++.++. .|++++++++++ ++++|++++++
T Consensus 120 ~~~~~~~----~~gd~v~~~~~~~~~~~~~~~---~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~ 187 (401)
T 1fc4_A 120 GLFETLL----GAEDAIISDALNHASIIDGVR---LCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVF 187 (401)
T ss_dssp TTHHHHC----CTTCEEEEETTCCHHHHHHHH---TSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEE
T ss_pred HHHHHHc----CCCCEEEEcchhHHHHHHHHH---HcCCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 9999887 899999999999998877654 44999988873 389999998875 78999999999
Q ss_pred cccccccChHHHHHHHHhcCCcEEEehhhhcCCC-c--------ccCCCCcccEEEecccccc-CCCCceEEEEecCCCc
Q 040741 207 NEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI-P--------VDVEKWNVSLMSLSGHKIY-GPKGVGALYMRRRPRI 276 (457)
Q Consensus 207 ~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~-~--------~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~~~~~ 276 (457)
||+|.+.|+++|.++|++||+++|+|++|+.+.. + .++.. +.|+++.|+||.+ |+.| |+++++++.++
T Consensus 188 nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g-G~~~~~~~~~~ 265 (401)
T 1fc4_A 188 SMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG-GYTAARKEVVE 265 (401)
T ss_dssp TTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC-EEEEECHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC-EEEEcCHHHHH
Confidence 9999999999999999999999999999975543 2 23322 5799999999976 7776 99999876655
Q ss_pred cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741 277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356 (457)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (457)
++......+ ...++.+...++++.++++.... .++..++++++++++.+.|++ + ++.+.. ....++.+
T Consensus 266 ~l~~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~----~~~~~~~~ 333 (401)
T 1fc4_A 266 WLRQRSRPY-----LFSNSLAPAIVAASIKVLEMVEA-GSELRDRLWANARQFREQMSA-A-GFTLAG----ADHAIIPV 333 (401)
T ss_dssp HHHHHCHHH-----HHSCCCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH-T-TCCBCC----SSSSEEEE
T ss_pred HHHHhCcCc-----eeCCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-c-CCcccC----CCCCEEEE
Confidence 554322110 11346777788877778876643 578888999999999999998 5 666542 12455556
Q ss_pred EEcc-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 357 SFAY-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 357 ~~~~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
.++. .+..++...| +||.+.+|..|... ...+++||+++..++++|+++++++|+++++++
T Consensus 334 ~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 334 MLGDAVVAQKFARELQKEGIYVTGFFYPVVP----------------KGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp EEECHHHHHHHHHHHHHTTEECCEECTTSSC----------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EcCChHHHHHHHHHHHHCCcEEeeecCCCCC----------------CCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 6653 2345566655 69999887654321 123689999999899999999999999998876
Q ss_pred H
Q 040741 434 R 434 (457)
Q Consensus 434 ~ 434 (457)
+
T Consensus 398 ~ 398 (401)
T 1fc4_A 398 G 398 (401)
T ss_dssp T
T ss_pred C
Confidence 4
No 59
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=100.00 E-value=1.1e-32 Score=278.84 Aligned_cols=341 Identities=13% Similarity=0.067 Sum_probs=242.0
Q ss_pred cccccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCC-------c--cchhhhHHHHHHHHHHHHHHHhCCCCCc
Q 040741 50 KGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSR-------T--HLFGWESEVAVETARSQIADLIGASPKE 120 (457)
Q Consensus 50 ~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~-------~--~~~~~~~~~~~~~~~~~la~~~g~~~~~ 120 (457)
+........+|||++++++.+++|+++|.......+.++..+ . +..+....+..+++++++++++|++++
T Consensus 73 ~~~~~~~~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~- 151 (456)
T 2z67_A 73 KFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH- 151 (456)
T ss_dssp HHHHTTBGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE-
T ss_pred HHHHhccccccccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC-
Confidence 444445567899999999999999999888542222222110 0 011113456788899999999999876
Q ss_pred EEEeCChH-HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC---CCCCCCCHHHHHHhc-C-
Q 040741 121 IIFTSGAT-ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV---GADGIVNLDELRAAI-R- 194 (457)
Q Consensus 121 i~~t~g~T-~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~---~~~~~~d~~~le~~i-~- 194 (457)
++||+||| .++.+++.++..+ .++++|+++..+|+++..+++.. |++++.++. +.++.+|+++|+++| +
T Consensus 152 ~~~t~g~te~a~~~al~~~~~~--~~~~~vi~~~~~h~s~~~~~~~~---G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~ 226 (456)
T 2z67_A 152 AIATPISTGMSISLCLSAARKK--YGSNVVIYPYASHKSPIKAVSFV---GMNMRLVETVLDGDRVYVPVEDIENAIKKE 226 (456)
T ss_dssp EEEESSCHHHHHHHHHHHHHHH--HCCCEEEEECCCCHHHHHHHHHT---TCEEEEECCEEETTEEECCHHHHHHHHHHH
T ss_pred EEEeCcHHHHHHHHHHHHHHHh--cCCCEEEEECCCcHHHHHHHHHc---CCCceEEEEeccCCCCCcCHHHHHHHHHHH
Confidence 99999999 5666577765421 16788998999999998887765 999999886 567889999999999 4
Q ss_pred ---CCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCC---cccCCCC--cccEEEecccc-ccCCCCc
Q 040741 195 ---PDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI---PVDVEKW--NVSLMSLSGHK-IYGPKGV 265 (457)
Q Consensus 195 ---~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~~--~~Di~~~s~~K-~~g~~G~ 265 (457)
.++.+|+++.++|++|.+.|+++|.++|+++|+++|+|+||+.... +.+.... ++|++++|+|| +++|.|+
T Consensus 227 ~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~ 306 (456)
T 2z67_A 227 IELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGG 306 (456)
T ss_dssp HHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSC
T ss_pred hhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCe
Confidence 4677888899999999999999999999999999999988774432 3332222 68999999999 4678899
Q ss_pred eEEEEe-cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCC---Ce
Q 040741 266 GALYMR-RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLD---GV 340 (457)
Q Consensus 266 G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~ 340 (457)
|+++++ ++.+.++.+...|+. . .....++.+++..+ .++++++.++..++++++.+.|.+ ++ ++
T Consensus 307 G~l~~~~~~~~~~l~~~~~g~~------~----~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~ 375 (456)
T 2z67_A 307 GLVYSTDAEFIKEISLSYPGRA------S----ATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND-LSKKTGG 375 (456)
T ss_dssp EEEEESCHHHHHHHHTTSCSCB------C----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSC
T ss_pred EEEEEcCHHHHhhcCcCCCCCC------C----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccCC
Confidence 999995 444455544443321 1 11233344455444 346889999999999999999988 65 66
Q ss_pred EEeCCCCCcccceEEEEE--ccccchHHHhcc--cCe---Eec------ccCccCCCCCChhHHHHHcCCCccCCCCeEE
Q 040741 341 VVNGSMERRYIGNLNLSF--AYVEGESLLMGL--KEV---AVS------SGSACTSASLEPSYVLRALGVDEDMAHTSIR 407 (457)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l--~~i---~~~------~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iR 407 (457)
.+..+. +.+.+.+ +.. ..++...| +++ .+. .|..|.. ..++++|
T Consensus 376 ~v~~~~-----~~v~~~~~~~~~-~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~-----------------~~~~~vr 432 (456)
T 2z67_A 376 KFLDVE-----SPIASCISVNSD-PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGT-----------------YTHDYIV 432 (456)
T ss_dssp CBCCCC-----CSSEEEEECSSC-HHHHHHHHHHTTEESCEEECTTCHHHHTCSSC-----------------CSCCEEE
T ss_pred EecCCC-----CeEEEEEecccH-HHHHHHHHHHcCCCcceEEeecCccccccccc-----------------cCcchhh
Confidence 665532 3334454 321 24555555 343 222 1222211 1237999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 040741 408 FGIGRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 408 i~~~~~~t~edid~~~~~l~~~~ 430 (457)
++++.++|++|||+++++|++++
T Consensus 433 ~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 433 MNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp EECCTTCCHHHHHHHHHHHHTC-
T ss_pred hhhhcCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998754
No 60
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-31 Score=269.38 Aligned_cols=337 Identities=17% Similarity=0.162 Sum_probs=254.2
Q ss_pred CCHHHHHHHHHHHhhccC-CCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHHhhhhhc-C
Q 040741 69 VDPRVLDAMLPFYLSRYG-NPHSRTHLFGWESEVAVETARSQIADLIGAS--PKEIIFTSGATESNNVSIKGVMHFYK-D 144 (457)
Q Consensus 69 ~~~~v~~a~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~i~~t~g~T~a~~~al~~~~~~~~-~ 144 (457)
.++.+.+++.+.+..... ++.. +.......+...++++++++++|++ ++++++++|||+|+.+++++++.... .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLH--PDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTC--TTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhcCCCC--cccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence 347788888887765322 3222 1112234467778999999999997 66899999999999999999874211 1
Q ss_pred CC---CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHH
Q 040741 145 KK---RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQ 220 (457)
Q Consensus 145 ~g---~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~ 220 (457)
+| ++|+++.+.|+++..+++.+ |++++.++.+. ++.+|+++|+++|++++++|++++++|++|.+.|+++|.+
T Consensus 154 ~g~~~~~Vi~~~~~h~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~ 230 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAGFDKAAYYF---GMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGK 230 (497)
T ss_dssp SCCSSCEEEEETTSCHHHHHHHHHS---CCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTT
T ss_pred CCCCCceEEEeCCccHHHHHHHHHc---CCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHH
Confidence 34 89999999999999888776 99999999987 7899999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEehhhhcCC-----------C-cccCCCCcccEEEeccccc-cCCCCceEEEEecCCCcccc----cccc
Q 040741 221 ICKEFKIPFHTDAAQALGK-----------I-PVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRRPRIRVE----PLIN 283 (457)
Q Consensus 221 l~~~~~v~li~D~a~~~g~-----------~-~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~----~~~~ 283 (457)
+|++||+++|+|++|+.+. . +++....++|++++|+||+ +|+.|+|+++++++...... +...
T Consensus 231 la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 310 (497)
T 3mc6_A 231 IAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWT 310 (497)
T ss_dssp HHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCT
T ss_pred HHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhccccccc
Confidence 9999999999999997332 2 3555566899999999995 68889999999875433221 1111
Q ss_pred CCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc
Q 040741 284 GGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE 362 (457)
Q Consensus 284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (457)
++........++.+...++++.+++..+.. ++++..++..++++++.+.|.+.++++.+++++ ..+++.+...+.+
T Consensus 311 ~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~---~~~~v~~~~~~~~ 387 (497)
T 3mc6_A 311 GGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP---RYSVISFSSKTLN 387 (497)
T ss_dssp TSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC---CSSEEEEECTTTT
T ss_pred CCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC---CeeEEEEeCCCCC
Confidence 211111122344455556667777776554 578899999999999999999834899887653 2455556655556
Q ss_pred chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 040741 363 GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM 436 (457)
Q Consensus 363 ~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~ 436 (457)
..++...| +||.+..+.. ...+|++++ .++++|+++++++|+++++++++.
T Consensus 388 ~~~l~~~L~~~Gi~v~~~~~----------------------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~~ 440 (497)
T 3mc6_A 388 IHELSDRLSKKGWHFNALQK----------------------PVALHMAFT-RLSAHVVDEICDILRTTVQELKSE 440 (497)
T ss_dssp HHHHHHHHHTTTCBCEECCS----------------------SCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCEEEecCCC----------------------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHhC
Confidence 67777777 5776654321 146899998 678999999999999999887643
No 61
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=9e-31 Score=254.02 Aligned_cols=315 Identities=16% Similarity=0.154 Sum_probs=238.4
Q ss_pred cCCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741 54 IAGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN 132 (457)
Q Consensus 54 ~~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~ 132 (457)
...+.|+|+.+.+. ++++++.+++.+.......+| .....++++.+++++|++++++++|+|+|++++
T Consensus 14 ~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~ 82 (337)
T 3p1t_A 14 AAAQAVCLAFNENPEAVEPRVQAAIAAAAARINRYP-----------FDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFD 82 (337)
T ss_dssp CCCCCEECSSCCCCSCCCHHHHHHHHHHGGGTTSCC-----------TTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHH
T ss_pred CCCCceEeeCCCCCCCCCHHHHHHHHHhhhhhccCC-----------CCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHH
Confidence 34677999998655 788999999999876532222 136788999999999998889999999999999
Q ss_pred HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741 133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI 212 (457)
Q Consensus 133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~ 212 (457)
+++.++ +|++|++..+.|.++...++. .|.+++.++.+.++.+|+++++++ .+++++++++++||+|.+
T Consensus 83 ~~~~~~------~gd~vl~~~p~~~~~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~ 151 (337)
T 3p1t_A 83 RISAEF------SSMRFVTAWPGFDGYRARIAV---SGLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQA 151 (337)
T ss_dssp HHHHHS------TTSEEEEESSSCSHHHHHHTT---SCCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCC
T ss_pred HHHHhc------CCCeEEEeCCCcHHHHHHHHH---cCCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCC
Confidence 988875 689999999999998876554 499999999988888999999887 578999999999999999
Q ss_pred cChHHHHHHHHhcCCcEEEehhhhc-C-CCcccCCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCccc
Q 040741 213 QPMEEIGQICKEFKIPFHTDAAQAL-G-KIPVDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQE 288 (457)
Q Consensus 213 ~~l~~i~~l~~~~~v~li~D~a~~~-g-~~~~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~ 288 (457)
.|++++.++|+++++ +++|++|+. + .........+.++++.|++|.+|++| +|+++++++..+++....
T Consensus 152 ~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~------ 224 (337)
T 3p1t_A 152 LSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQ------ 224 (337)
T ss_dssp CCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTS------
T ss_pred CCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhc------
Confidence 999999999999997 566999873 2 11222223356899999999887554 699998876655554322
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHh
Q 040741 289 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLM 368 (457)
Q Consensus 289 ~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (457)
..++++...+.++..+++.. +.+.+..++..++++++.+.|++ + ++.+..+. .+++. +...++..+..
T Consensus 225 ---~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~--~~~~~~~~~~~ 292 (337)
T 3p1t_A 225 ---WFCNVGTLDLHALEAALDND-RAREAHIAKTLAQRRRVADALRG-L-GYRVASSE----ANFVL--VENAAGERTLR 292 (337)
T ss_dssp ---CTTCSCHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHH-T-TCCBCCCS----SSEEE--EECTTTHHHHH
T ss_pred ---CCCCCCHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHH-C-cCEECCCC----CeEEE--EEcCCHHHHHH
Confidence 12356666666666665532 23566777778888999999998 5 66654321 23333 33344555655
Q ss_pred cc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741 369 GL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE 431 (457)
Q Consensus 369 ~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~ 431 (457)
.| +||.+.+|..|.. .+++||+++ +++|+++++++|+++.+
T Consensus 293 ~l~~~gi~v~~g~~~~~-------------------~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 293 FLRERGIQVKDAGQFGL-------------------HHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp HHHHTTEECEEGGGGTC-------------------CSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred HHHHCCeEEEECccCCC-------------------CCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 55 6999999886642 279999987 58999999999987653
No 62
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=1.3e-31 Score=267.08 Aligned_cols=332 Identities=16% Similarity=0.177 Sum_probs=245.2
Q ss_pred CCCcEEecCCCC---C-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEe
Q 040741 55 AGRPLYLDMQAT---T-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI------GASPKEIIFT 124 (457)
Q Consensus 55 ~~~~i~l~~~~~---~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i~~t 124 (457)
..+.++|+.+.+ . +.++++.+++.+.+.... . .|+. .....++++.+++++ +++++++++|
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~------~y~~--~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t 107 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-N------YYGD--SEGLPELRKAIVEREKRKNGVDITPDDVRVT 107 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-C------SCCC--TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-C------CCCC--CCCcHHHHHHHHHHHHHhcCCCCCHHHEEEc
Confidence 456789988877 3 567899999999886421 0 0111 012345666666665 4567789999
Q ss_pred CChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEE
Q 040741 125 SGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISV 202 (457)
Q Consensus 125 ~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i 202 (457)
+|||+|+.++++++. ++|++|+++.++|+++...++.. |.+++.++.+. ++.+|+++|++++++++++|++
T Consensus 108 ~g~~~al~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i 180 (406)
T 1xi9_A 108 AAVTEALQLIFGALL----DPGDEILVPGPSYPPYTGLVKFY---GGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAV 180 (406)
T ss_dssp SHHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEE
T ss_pred CChHHHHHHHHHHhC----CCCCEEEEcCCCCccHHHHHHHc---CCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEE
Confidence 999999999999987 89999999999999988777655 99999998874 4568999999999999999999
Q ss_pred eccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCCC--Ccc-cEEEeccccccCCCC--ceEEE--
Q 040741 203 MAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVEK--WNV-SLMSLSGHKIYGPKG--VGALY-- 269 (457)
Q Consensus 203 ~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~--~~~-Di~~~s~~K~~g~~G--~G~l~-- 269 (457)
++++||+|.+.| +++|.++|++||+++|+|++|+.+.. ...+.. .+. |+++.|++|.+|++| +|+++
T Consensus 181 ~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 260 (406)
T 1xi9_A 181 INPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFV 260 (406)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEE
T ss_pred ECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEEe
Confidence 999999999987 89999999999999999999986532 111111 345 889999999888666 89999
Q ss_pred Eec----CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC
Q 040741 270 MRR----RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGS 345 (457)
Q Consensus 270 ~~~----~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 345 (457)
.++ +..+++..... .. .+++.....++.++++...+.+++..++++++++++.+.|++ +|++.+..+
T Consensus 261 ~~~~~~~~l~~~l~~~~~-------~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~ 331 (406)
T 1xi9_A 261 DPENKLSEVREAIDRLAR-------IR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE-IPGISTTKP 331 (406)
T ss_dssp CTTCTTHHHHHHHHHHHH-------HT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-STTEECCCC
T ss_pred cCchhHHHHHHHHHHHHH-------hh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh-CCCCeeecC
Confidence 665 44444433221 11 355666666666676533334778888999999999999998 788877643
Q ss_pred CCCcccceEEEEEc---cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741 346 MERRYIGNLNLSFA---YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV 419 (457)
Q Consensus 346 ~~~~~~~~~~~~~~---~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi 419 (457)
.. +.++.+.++ +.+..++...+ +||.+.+|..|.. ...+++||+++ ++++++
T Consensus 332 ~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~lRis~~--~~~~~i 389 (406)
T 1xi9_A 332 QG---AFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE-----------------YGAGHFRAVFL--PPIEIL 389 (406)
T ss_dssp CB---SSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTBEEEECC--SCHHHH
T ss_pred Ce---eEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCC-----------------CCCCEEEEEec--CCHHHH
Confidence 21 223333454 24556666554 4899988875531 12379999998 789999
Q ss_pred HHHHHHHHHHHHHH
Q 040741 420 DRAIELTVKQVEKL 433 (457)
Q Consensus 420 d~~~~~l~~~~~~~ 433 (457)
++++++|+++++++
T Consensus 390 ~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 390 EEAMDRFEKFMKER 403 (406)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 63
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=100.00 E-value=8.1e-31 Score=268.08 Aligned_cols=348 Identities=15% Similarity=0.139 Sum_probs=243.4
Q ss_pred CCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHH
Q 040741 55 AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIFTSGATESNNV 133 (457)
Q Consensus 55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~t~g~T~a~~~ 133 (457)
..++.||++..+++.++.+++++.....+ +....+...........++++++++++|+++ ++++||+|||+|+++
T Consensus 98 ~~~~~yl~~~~~~~~~~~v~~~~~~~~~n----~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~ 173 (497)
T 2qma_A 98 TQHPDCIAHLHTPPLMPAVAAEAMIAALN----QSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQM 173 (497)
T ss_dssp TTSTTBCSSSCCCCBHHHHHHHHHHHHHC----CCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHH
T ss_pred CCCCCeeEeCCCCCcHHHHHHHHHHHhhc----ccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHH
Confidence 45678999999999999999999877653 2222222233444566667899999999975 679999999999999
Q ss_pred HHHHhhhhhc---------CC------CC-EEEEcCCCCcchHHHHHHHHhcCc-EEEEEeCCCCCCCCHHHHHHhcCCC
Q 040741 134 SIKGVMHFYK---------DK------KR-HVITTQTEHKCVLDSCRHLQQEGF-EITYLPVGADGIVNLDELRAAIRPD 196 (457)
Q Consensus 134 al~~~~~~~~---------~~------g~-~vi~~~~~h~~~~~~~~~~~~~G~-~v~~v~~~~~~~~d~~~le~~i~~~ 196 (457)
++.++...+. .+ ++ .|+++...|.++..+++.+.. |. +++.+|.+.++.+|+++|+++|+++
T Consensus 174 al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~-g~~~v~~v~~~~~~~~d~~~L~~~i~~~ 252 (497)
T 2qma_A 174 GLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGL-GEKAVMTVDANADGTMDITKLDEVIAQA 252 (497)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTS-CGGGEEEECBCTTSSBCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCC-CcccEEEEecCCCCcCCHHHHHHHHHHH
Confidence 9998542211 11 35 899999999999998887622 33 8999999888999999999999754
Q ss_pred ----c--eEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc----CCCC-cccEEEecccc-ccCCCC
Q 040741 197 ----T--GLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD----VEKW-NVSLMSLSGHK-IYGPKG 264 (457)
Q Consensus 197 ----t--~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~----~~~~-~~Di~~~s~~K-~~g~~G 264 (457)
+ .+|++++++|++|.+.|+++|+++|++||+++|+|+||+.+..+.+ +... ++|++++|+|| +++|.|
T Consensus 253 ~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~ 332 (497)
T 2qma_A 253 KAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTIS 332 (497)
T ss_dssp HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSS
T ss_pred HHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcc
Confidence 3 4888999999999999999999999999999999999998776544 2233 67999999999 566888
Q ss_pred ceEEEEecCCCccccccccCCccccccccCCCChh----------HHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHH
Q 040741 265 VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTP----------LIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGI 333 (457)
Q Consensus 265 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~----------~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l 333 (457)
+|+++++++.. +.+......+-.......++.. ...++..+++.+ .++++++.++..++++++.+.|
T Consensus 333 ~G~l~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L 410 (497)
T 2qma_A 333 CGALLVNDKSN--FKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMI 410 (497)
T ss_dssp CEEEEESCGGG--GGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCHHH--HHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987532 1111111100000000001110 112233344433 3457888999999999999999
Q ss_pred hhcCCCeEEeCCCCCcccceEEEEEcccc--ch----HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCe
Q 040741 334 KEKLDGVVVNGSMERRYIGNLNLSFAYVE--GE----SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTS 405 (457)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~ 405 (457)
++ +++++++.++. .+++.|.+.... .. .+...+ +|+.+.++. ...+.+.
T Consensus 411 ~~-~~~~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~-------------------~~~g~~~ 467 (497)
T 2qma_A 411 RT-NDQFELLAEPS---LSTVLFRATHETADLDELNKALRLEALTRGIAVLGET-------------------IVDGKTA 467 (497)
T ss_dssp HT-CTTEEECSCCS---SSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEE-------------------EETTEEE
T ss_pred hh-CCCeEEEcCCC---ceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEee-------------------EECCEEE
Confidence 99 88999876543 456666664321 11 222323 344332211 0112368
Q ss_pred EEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 040741 406 IRFGI-GRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 406 iRi~~-~~~~t~edid~~~~~l~~~~~~ 432 (457)
+||++ +..++++||++++++|++++++
T Consensus 468 lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 468 LKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 99998 8889999999999999998775
No 64
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=8.6e-31 Score=256.65 Aligned_cols=319 Identities=11% Similarity=0.097 Sum_probs=244.6
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNV 133 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~ 133 (457)
..++|+|+.+.+. ++++++.+++.+.+.....+|.. ...++++.++++++++++++++|+|+|+|+++
T Consensus 25 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~ 93 (361)
T 3ftb_A 25 GRELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDV-----------NYRRLNKSIENYLKLKDIGIVLGNGASEIIEL 93 (361)
T ss_dssp ---CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCCCT-----------TCHHHHHHHHHHHTCCSCEEEEESSHHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-----------cHHHHHHHHHHHhCCCcceEEEcCCHHHHHHH
Confidence 4566777776544 57899999999998765444332 34689999999999988899999999999999
Q ss_pred HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccccc
Q 040741 134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ 213 (457)
Q Consensus 134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~ 213 (457)
+++++ ++|++..+.|.++...++.. |.+++.++.+.++.+|++++++++++ +++|++++++||+|.+.
T Consensus 94 ~~~~~--------d~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~ 161 (361)
T 3ftb_A 94 SISLF--------EKILIIVPSYAEYEINAKKH---GVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLI 161 (361)
T ss_dssp HHTTC--------SEEEEEESCCTHHHHHHHHT---TCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCC
T ss_pred HHHHc--------CcEEEecCChHHHHHHHHHc---CCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCC
Confidence 88865 89999999999988877665 99999999998878899999999998 99999999999999998
Q ss_pred C---hHHHHHHHHhcCCcEEEehhhhcCCCc-----cc-CCCCcccEEEeccccccCCCC--ceEEE-EecCCCcccccc
Q 040741 214 P---MEEIGQICKEFKIPFHTDAAQALGKIP-----VD-VEKWNVSLMSLSGHKIYGPKG--VGALY-MRRRPRIRVEPL 281 (457)
Q Consensus 214 ~---l~~i~~l~~~~~v~li~D~a~~~g~~~-----~~-~~~~~~Di~~~s~~K~~g~~G--~G~l~-~~~~~~~~~~~~ 281 (457)
| +++|+++|++||+++|+|++|+..... .. ....+.++++.|++|.+|.+| +|+++ .+++..+++...
T Consensus 162 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~ 241 (361)
T 3ftb_A 162 NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAK 241 (361)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhh
Confidence 7 667888888999999999999854331 11 112234578889999877544 78888 555544444332
Q ss_pred ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE-EeCCCCCcccceEEEEEcc
Q 040741 282 INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV-VNGSMERRYIGNLNLSFAY 360 (457)
Q Consensus 282 ~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 360 (457)
.. ..+++...+.++.++++. .+.+++..++.+++++++.+.|++ ++++. +..+. .+++.+.++.
T Consensus 242 ~~---------~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~----~~~~~~~~~~ 306 (361)
T 3ftb_A 242 QN---------PWNINCFAEMAAINCLKD-TNYIEESLLWIKKERKRFIEELNK-IGFIKRVFSPH----ANFVLCRLEN 306 (361)
T ss_dssp SC---------TTCSCHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHHHHHHHHH-SSSEEEEECCS----SSEEEEEESS
T ss_pred CC---------CCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCCceecCCC----CeEEEEEcCC
Confidence 21 236777777777777764 345788899999999999999998 88887 65432 3455666665
Q ss_pred ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741 361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE 431 (457)
Q Consensus 361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~ 431 (457)
.+..++...| +||.+.+|..|.. ...+++||+++ +.++++++++.|++..+
T Consensus 307 ~~~~~l~~~l~~~gi~v~~g~~~~~-----------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 307 ISGEKLYDSLLKEDIVIRRCCNFIG-----------------LDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp SCHHHHHHHHHTTTEECEECTTSTT-----------------CCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCeEEeeCccCCC-----------------CCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 5666777766 6999998876642 12389999987 68899999998887765
No 65
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=100.00 E-value=1.1e-31 Score=262.51 Aligned_cols=325 Identities=18% Similarity=0.239 Sum_probs=239.2
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK 136 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~ 136 (457)
..+||+++.++++++++.+++.+.+..+ .. +....+..+++++++++++|.+++++++|+|||+|++++++
T Consensus 14 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~-~~--------~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~ 84 (359)
T 1svv_A 14 KPYSFVNDYSVGMHPKILDLMARDNMTQ-HA--------GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACS 84 (359)
T ss_dssp -CEECSCSCSSCCCHHHHHHHHHHTTCC-CC--------STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHH
T ss_pred eeEEecCCCcCCCCHHHHHHHHHHHhhc-cc--------cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHH
Confidence 4799999888899999999999987531 11 11223678899999999999988889999999999999999
Q ss_pred HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCC-------ceEEEEecccccc
Q 040741 137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPD-------TGLISVMAVNNEI 209 (457)
Q Consensus 137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~-------t~li~i~~~~~~~ 209 (457)
++. ++|++|+++.+.|+++..+ ..+...|.+++.++.+ ++.+|+++++++++++ +++|+++++ ||+
T Consensus 85 ~~~----~~gd~vl~~~~~~~~~~~~-~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~pt 157 (359)
T 1svv_A 85 LAL----RPWEAVIATQLGHISTHET-GAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEV 157 (359)
T ss_dssp HHC----CTTEEEEEETTSHHHHSST-THHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTT
T ss_pred HHh----CCCCEEEEcccchHHHHHH-HHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCC
Confidence 987 7999999999999988774 1234459999999986 6789999999999765 899999998 789
Q ss_pred ccccC---hHHHHHHHHhcCCcEEEehhh---hcCCCcccCCC----CcccEEEeccccccCCCCceEEEEecCCCcccc
Q 040741 210 GVIQP---MEEIGQICKEFKIPFHTDAAQ---ALGKIPVDVEK----WNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVE 279 (457)
Q Consensus 210 G~~~~---l~~i~~l~~~~~v~li~D~a~---~~g~~~~~~~~----~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~ 279 (457)
|.+.| +++|.++|++||+++|+|++| +.+..+.+... ...|++++|++|++++.|+|+++++++..+++.
T Consensus 158 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~~~~ 237 (359)
T 1svv_A 158 GTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNAR 237 (359)
T ss_dssp SCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHH
T ss_pred ceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCCCceEEEEEcccHHHHHH
Confidence 99999 889999999999999999999 65665544332 357999999999888888999999888777765
Q ss_pred ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741 280 PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA 359 (457)
Q Consensus 280 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (457)
+....++. .. ..+.....++..+++ ..++++..++++++++++.+.| + .+++.+.++.. ..++.+.++
T Consensus 238 ~~~~~~~~----~~-~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~l~~~L-~-~~~~~~~~~~~---~~~~~~~~~ 305 (359)
T 1svv_A 238 HLIKQRGA----LM-AKGWLLGIQFEVLMK--DNLFFELGAHSNKMAAILKAGL-E-ACGIRLAWPSA---SNQLFPILE 305 (359)
T ss_dssp HHHHHTTC----CC-TTTHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHH-H-HTTCCBSSCCS---SSEECBEEE
T ss_pred HHHhcCCc----cc-ccchhhHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHh-c-cCCeEEccCCc---cceEEEEcC
Confidence 54221111 00 112222233322221 1246778889999999999999 5 47877765422 233333332
Q ss_pred cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 360 YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 360 ~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
.++...| + ||.+.+.. ....++|||+++..++++|+++++++|+++++++
T Consensus 306 ----~~~~~~l~~~~gi~v~~~~--------------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 306 ----NTMIAELNNDFDMYTVEPL--------------------KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp ----HHHHHHHTTTEECEEEEEE--------------------TTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred ----HHHHHHHHHhcCEEEEecc--------------------cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 3555555 4 77662100 0123799999998899999999999999887653
No 66
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=4.9e-31 Score=265.26 Aligned_cols=341 Identities=11% Similarity=0.054 Sum_probs=252.2
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhc--cCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeC
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEIIFTS 125 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i~~t~ 125 (457)
+.+.++|+.+.+. +.++++.+++.+.+... .+++.. ....++++.++++++ ++++++++|+
T Consensus 43 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~----------~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~ 112 (437)
T 3g0t_A 43 GTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNL----------DGLPELKQEASRFAKLFVNIDIPARACVPTV 112 (437)
T ss_dssp TCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCT----------TCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred CCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCC----------CChHHHHHHHHHHHHHhhCCCCCcccEEEeC
Confidence 3567888877766 56899999999988741 111111 123566777777776 5677899999
Q ss_pred ChHHHHHHHHHHhhhhhcCCCC--EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhc-CCCceEEE
Q 040741 126 GATESNNVSIKGVMHFYKDKKR--HVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAI-RPDTGLIS 201 (457)
Q Consensus 126 g~T~a~~~al~~~~~~~~~~g~--~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i-~~~t~li~ 201 (457)
|+|+|++++++++... ++|+ +|+++.+.|.++...++.. |++++.++.+ .++.+|++++++++ ++++++|+
T Consensus 113 g~t~al~~~~~~l~~~--~~gd~~~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~ 187 (437)
T 3g0t_A 113 GSMQGCFVSFLVANRT--HKNREYGTLFIDPGFNLNKLQCRIL---GQKFESFDLFEYRGEKLREKLESYLQTGQFCSII 187 (437)
T ss_dssp HHHHHHHHHHHHHTTS--CTTCSCCEEEEESCCHHHHHHHHHH---TCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEE
T ss_pred CHHHHHHHHHHHHhcC--CCCCccEEEEeCCCcHhHHHHHHHc---CCEEEEEeecCCCCccCHHHHHHHHhcCCceEEE
Confidence 9999999999988511 4788 9999999999998887776 9999999986 34468999999999 78899999
Q ss_pred EeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cc--------cCCC-CcccEEEeccccccCCCC-
Q 040741 202 VMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PV--------DVEK-WNVSLMSLSGHKIYGPKG- 264 (457)
Q Consensus 202 i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~--------~~~~-~~~Di~~~s~~K~~g~~G- 264 (457)
+++++||+|.+.| +++|+++|++||+++|+|++|+.... ++ .+.. .+.++++.|+||.+|++|
T Consensus 188 l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 267 (437)
T 3g0t_A 188 YSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQ 267 (437)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGG
T ss_pred EeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccc
Confidence 9999999999998 67789999999999999999985322 21 2222 466799999999888555
Q ss_pred -ceEEEEecCCCc-ccccccc---C-------CccccccccCCCChhHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHH
Q 040741 265 -VGALYMRRRPRI-RVEPLIN---G-------GGQERGIRSGTLPTPLIVGFGSACEIAKKE---MDYDHKRITALHDRL 329 (457)
Q Consensus 265 -~G~l~~~~~~~~-~~~~~~~---~-------~~~~~~~~~~t~~~~~~~al~~al~~~~~~---~~~~~~~~~~~~~~l 329 (457)
+|+++++++..+ .+..... + ..........+++.....++..+++..... +++..++++++++++
T Consensus 268 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 347 (437)
T 3g0t_A 268 RIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIM 347 (437)
T ss_dssp CCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred eeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHH
Confidence 899999876655 4111100 0 000011123467777777777777765433 789999999999999
Q ss_pred HHHHhhcCCCeEEe------CCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccC
Q 040741 330 LNGIKEKLDGVVVN------GSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDM 401 (457)
Q Consensus 330 ~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~ 401 (457)
.+.|++ + ++.+. .++. ...++.+.+++.+..++...| +||.+.+|..|...
T Consensus 348 ~~~L~~-~-g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~----------------- 406 (437)
T 3g0t_A 348 KKMFLD-N-GFNIVYDKDGNEPLA--DGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSK----------------- 406 (437)
T ss_dssp HHHHHT-T-TEEESSCEETTEECC--SSSEEEEEETTCCHHHHHHHHHHTTEECEESTTTTCC-----------------
T ss_pred HHHHHH-c-CCEEeccccCCCCCc--eeEEEEEecCCCCHHHHHHHHHHcCeEEeeccccCCC-----------------
Confidence 999999 5 88876 2211 244556666656677777777 69999988766431
Q ss_pred CCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 402 AHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 402 ~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
..+++||+++.. +++|+++++++|++++++
T Consensus 407 ~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 407 RNEAMRICTSLL-PESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp CTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 126899999954 899999999999988753
No 67
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=2.3e-31 Score=264.23 Aligned_cols=332 Identities=17% Similarity=0.172 Sum_probs=248.2
Q ss_pred cEEecCCCCCC----CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741 58 PLYLDMQATTP----VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNV 133 (457)
Q Consensus 58 ~i~l~~~~~~~----~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~ 133 (457)
.-|+|+.++.+ .++++.+++.+.+.. ++++.. .+.+.+...+...++++++++++|.+ + .+++++||+|+.+
T Consensus 43 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~-~~~~~~g~~~~~~~l~~~la~~~~~~-~-~i~~~sGt~a~~~ 118 (399)
T 3tqx_A 43 KEVLNFCANNYLGLADHPALIKTAQTVVEQ-YGFGMA-SVRFICGTQTIHKELEKDISEFLGTD-D-TILYSSCFDANGG 118 (399)
T ss_dssp EEEEECSSCCTTSCTTCHHHHHHHHHHHHH-HCSCCC-SCCCCCCCBHHHHHHHHHHHHHHTCS-E-EEEESCHHHHHHT
T ss_pred eeEEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCC-CcCccccCchHHHHHHHHHHHHHCCC-c-EEEECchHHHHHH
Confidence 34666665553 469999999998876 333221 12222333467889999999999986 3 5666677999999
Q ss_pred HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC------CceEEEEecccc
Q 040741 134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP------DTGLISVMAVNN 207 (457)
Q Consensus 134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~------~t~li~i~~~~~ 207 (457)
+++++. ++|+.|+++.++|+++..+++.. |.+++.++.. |++++++++++ ++++|++++++|
T Consensus 119 ~l~~~~----~~gd~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~~~v~~~~~~n 186 (399)
T 3tqx_A 119 LFETLL----GPEDAIISDELNHASIIDGIRLC---KAQRYRYKNN-----AMGDLEAKLKEADEKGARFKLIATDGVFS 186 (399)
T ss_dssp THHHHC----CTTCEEEEETTCCHHHHHHHHSC---CSEEEEECTT-----CTTHHHHHHHHHHTTTCSSEEEEEESEET
T ss_pred HHHHhc----CCCCEEEECCcccHHHHHHHHHc---CCceeEeCCC-----CHHHHHHHHHhhhccCCCceEEEEeCCCC
Confidence 999887 89999999999999998876655 9999988863 78888888875 899999999999
Q ss_pred ccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc------CCC--CcccEEEeccccccC-CCCceEEEEecCCCccc
Q 040741 208 EIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD------VEK--WNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRV 278 (457)
Q Consensus 208 ~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~------~~~--~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~ 278 (457)
|+|.+.|+++|.++|++||+++|+|++|+.+..... ... .++|+++.|+||.+| ++| |+++++++.++.+
T Consensus 187 ptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~~ 265 (399)
T 3tqx_A 187 MDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHKEIIEWL 265 (399)
T ss_dssp TTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCHHHHHHH
Confidence 999999999999999999999999999976543221 111 257999999999776 887 9999988766555
Q ss_pred cccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE
Q 040741 279 EPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF 358 (457)
Q Consensus 279 ~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (457)
......+ ...++.+...++++..+++...+++++..++++++++++.+.|++ + ++.+..+ ..+++.+.+
T Consensus 266 ~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~----~~~~~~~~~ 334 (399)
T 3tqx_A 266 RNRSRPY-----LFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEK-L-GFQLVPG----NHPIIPVML 334 (399)
T ss_dssp HHHCHHH-----HSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCC----SSSEEEEEE
T ss_pred HHhCcce-----eccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-c-CCCcCCC----CCCEEEEEe
Confidence 4432111 123467777878888888876556789999999999999999998 4 6555422 144555555
Q ss_pred ccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 359 AYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 359 ~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
+.. +..++...| +||.+.++.+... ....+++||+++..++++|+++++++|+++++++
T Consensus 335 ~~~~~~~~~~~~l~~~gi~v~~~~~~~~----------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 335 GDAQLATNMADHLLQEGIYVVGFSYPVV----------------PMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp ECHHHHHHHHHHHHHTTEECCEECTTTS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCEEeeeCCCCC----------------CCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 432 345666655 6898886543211 1233799999998899999999999999998865
No 68
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.9e-31 Score=262.81 Aligned_cols=328 Identities=14% Similarity=0.134 Sum_probs=244.7
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCC
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEIIFTSG 126 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i~~t~g 126 (457)
+.+++.|..+.+. +.++++.+++.+.+... .++ +. .. .++++.++++++ ++++++++|+|
T Consensus 22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y--------~~---~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g 89 (377)
T 3fdb_A 22 GQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGY--------QP---DG-SLLSQATAEFYADRYGYQARPEWIFPIPD 89 (377)
T ss_dssp CTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSS--------CC---SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESC
T ss_pred CCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCC--------CC---CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCC
Confidence 4567788776655 67899999999988752 111 11 11 355666666665 67788999999
Q ss_pred hHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccc
Q 040741 127 ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVN 206 (457)
Q Consensus 127 ~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~ 206 (457)
||+|++++++++. ++|++|++..+.|.++...++.. |.+++.++.+.+ +|+++++++++++++++++++++
T Consensus 90 ~~~a~~~~~~~~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~--~d~~~l~~~l~~~~~~v~i~~p~ 160 (377)
T 3fdb_A 90 VVRGLYIAIDHFT----PAQSKVIVPTPAYPPFFHLLSAT---QREGIFIDATGG--INLHDVEKGFQAGARSILLCNPY 160 (377)
T ss_dssp HHHHHHHHHHHHS----CTTCCEEEEESCCTHHHHHHHHH---TCCEEEEECTTS--CCHHHHHHHHHTTCCEEEEESSB
T ss_pred hHHHHHHHHHHhc----CCCCEEEEcCCCcHhHHHHHHHc---CCEEEEccCCCC--CCHHHHHHHhccCCCEEEEeCCC
Confidence 9999999999987 89999999999999998887776 999999998866 99999999999999999999999
Q ss_pred cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCC---CcccEEEeccccccCCCC--ceEEEE-ec
Q 040741 207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEK---WNVSLMSLSGHKIYGPKG--VGALYM-RR 272 (457)
Q Consensus 207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~---~~~Di~~~s~~K~~g~~G--~G~l~~-~~ 272 (457)
||+|.+.| +++|+++|++||+++|+|++|+.... ...+.. .+.++++.|++|.+|.+| +|++++ ++
T Consensus 161 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 240 (377)
T 3fdb_A 161 NPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNP 240 (377)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCH
Confidence 99999987 66777789999999999999986322 222222 245588999999887555 798777 44
Q ss_pred CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741 273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG 352 (457)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 352 (457)
+..+.+..... ...++++...+.++.++++...+.+++..++++++++++.+.|++.+|++.+..+.. ..
T Consensus 241 ~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~ 310 (377)
T 3fdb_A 241 SDAEHWQQLSP-------VIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQA---TY 310 (377)
T ss_dssp HHHHHHHHSCH-------HHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSB---CS
T ss_pred HHHHHHHHHHH-------hhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCe---eE
Confidence 44444332211 122467777777777777655556788899999999999999987567888875432 22
Q ss_pred eEEEEEccc-cchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741 353 NLNLSFAYV-EGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK 428 (457)
Q Consensus 353 ~~~~~~~~~-~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~ 428 (457)
.+.+.++.. ...++...+ + ||.+.+|..|... ..+++||+++. +++++++++++|++
T Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~~Ris~~~--~~e~i~~~l~~l~~ 371 (377)
T 3fdb_A 311 LMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGED-----------------GTGFCRLNFAT--SREVLEEAIDRMAK 371 (377)
T ss_dssp EEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGG-----------------GTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred EEEEECcccCCCHHHHHHHHHhCCEEecCChhccCC-----------------CCCEEEEEeCC--CHHHHHHHHHHHHH
Confidence 334555532 123444444 3 9999999876531 23899999984 79999999999999
Q ss_pred HHHH
Q 040741 429 QVEK 432 (457)
Q Consensus 429 ~~~~ 432 (457)
++++
T Consensus 372 ~l~~ 375 (377)
T 3fdb_A 372 AVSH 375 (377)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 8764
No 69
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=9.3e-31 Score=256.56 Aligned_cols=317 Identities=16% Similarity=0.160 Sum_probs=243.1
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhh----ccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLS----RYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
..+.|+|+.+.+. ++++++.+++.+.+.. ..++|.. ...++++++++++|++++++++|+|+|+
T Consensus 25 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~-----------~~~~lr~~la~~~g~~~~~i~~t~g~~~ 93 (360)
T 3hdo_A 25 IASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSA-----------SSQKLREVAGELYGFDPSWIIMANGSDE 93 (360)
T ss_dssp CTTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCS-----------SCHHHHHHHHHHHTCCGGGEEEESSHHH
T ss_pred ccceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCC-----------chHHHHHHHHHHhCcCcceEEEcCCHHH
Confidence 3577899887776 6789999999998865 2333221 2368999999999998889999999999
Q ss_pred HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccc
Q 040741 130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEI 209 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~ 209 (457)
|++++++++. ++||+|++..+.|.++...++.. |.+++.++.+.++.+ ++++++++ ++++++++++||+
T Consensus 94 al~~~~~~l~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~--~~l~~~~~--~~~v~i~~p~npt 162 (360)
T 3hdo_A 94 VLNNLIRAFA----AEGEEIGYVHPSYSYYGTLAEVQ---GARVRTFGLTGDFRI--AGFPERYE--GKVFFLTTPNAPL 162 (360)
T ss_dssp HHHHHHHHHC----CTTCEEEEESSSCTHHHHHHHHH---TCEEEEECBCTTSSB--TTCCSSBC--SSEEEEESSCTTT
T ss_pred HHHHHHHHHh----CCCCEEEEcCCChHHHHHHHHHC---CCEEEEeeCCCCCCH--HHHHhhcC--CCEEEEeCCCCCC
Confidence 9999999997 89999999999999998887776 999999998766544 55544443 5699999999999
Q ss_pred ccccChHHHHHHHHhcCCcEEEehhhhcC--CCcccC-CCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccC
Q 040741 210 GVIQPMEEIGQICKEFKIPFHTDAAQALG--KIPVDV-EKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLING 284 (457)
Q Consensus 210 G~~~~l~~i~~l~~~~~v~li~D~a~~~g--~~~~~~-~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~ 284 (457)
|.+.|+++|.++|+++|+++|+|++|+.. ...... ...+.++++.|++|.+|.+| +|+++++++..+++.....
T Consensus 163 G~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~- 241 (360)
T 3hdo_A 163 GPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRD- 241 (360)
T ss_dssp CCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSC-
T ss_pred CCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCC-
Confidence 99999999999999999999999999842 111111 12345688999999877554 7999987765555543332
Q ss_pred CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccch
Q 040741 285 GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGE 364 (457)
Q Consensus 285 ~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (457)
..+.+...+.++.++++. .+.+++..++.+++++++.+.|++ + ++.+..+ ...++.+.+++.+..
T Consensus 242 --------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~----~~~~~~~~~~~~~~~ 306 (360)
T 3hdo_A 242 --------HYNLDRLAQAACVAALRD-QAYLSECCRRIRETREWFTTELRS-I-GYDVIPS----QGNYLFATPPDRDGK 306 (360)
T ss_dssp --------SCCSCHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH-T-TCEECCC----SSSEEEEECTTCCHH
T ss_pred --------CCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEcCC----CccEEEEECCCCCHH
Confidence 135677777777777764 345788899999999999999999 5 7776532 144555666655667
Q ss_pred HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741 365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE 431 (457)
Q Consensus 365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~ 431 (457)
++...| +||.+.++.. ....+++||+++ +.+|+|+++++|++..+
T Consensus 307 ~l~~~l~~~gi~v~~~~~-------------------~~~~~~iRis~~---~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 307 RVYDGLYARKVLVRHFSD-------------------PLLAHGMRISIG---TREEMEQTLAALKEIGE 353 (360)
T ss_dssp HHHHHHHHTTEECBCCCS-------------------TTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCEEEEECCC-------------------CCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence 777766 6898887542 112379999987 79999999999987765
No 70
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=5.9e-31 Score=263.56 Aligned_cols=334 Identities=11% Similarity=0.127 Sum_probs=251.8
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHH
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATESN 131 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a~ 131 (457)
..+++.|..+.+. +.++++.+++.+.+.... +.|+....+..+++.+++++.+| +++++++|++|+++|+
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~ 132 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGREHI-------FGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAI 132 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCC-------SSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhcCC-------cCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHH
Confidence 4566777655444 678999999999886421 11111124677888899999988 5677899999999999
Q ss_pred HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCC--CCCHHHHHHhcC-CCceEEEEecccc
Q 040741 132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADG--IVNLDELRAAIR-PDTGLISVMAVNN 207 (457)
Q Consensus 132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~--~~d~~~le~~i~-~~t~li~i~~~~~ 207 (457)
+++++++. ++|++|++..+.|.++...++.. |.+++.++.+ .++ .+|+++|+++++ +++++|++++++|
T Consensus 133 ~~a~~~~~----~~gd~Vi~~~~~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~n 205 (421)
T 3l8a_A 133 SIALQAFS----EKGDAVLINSPVYYPFARTIRLN---DHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHN 205 (421)
T ss_dssp HHHHHHHS----CTEEEEEEEESCCHHHHHHHHHT---TEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBT
T ss_pred HHHHHHhc----CCCCEEEECCCCcHHHHHHHHHC---CCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCC
Confidence 99999987 89999999999999988877665 9999999875 333 689999999998 7999999999999
Q ss_pred cccccc---ChHHHHHHHHhcCCcEEEehhhhcCCC----cccCC-----CCcccEEEeccccccCCCC--ceEEEEe-c
Q 040741 208 EIGVIQ---PMEEIGQICKEFKIPFHTDAAQALGKI----PVDVE-----KWNVSLMSLSGHKIYGPKG--VGALYMR-R 272 (457)
Q Consensus 208 ~~G~~~---~l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~-----~~~~Di~~~s~~K~~g~~G--~G~l~~~-~ 272 (457)
|+|.+. ++++|+++|++||+++|+|++|+.... ...+. ..+.++++.|++|.+|..| +|+++++ +
T Consensus 206 ptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~ 285 (421)
T 3l8a_A 206 PGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNE 285 (421)
T ss_dssp TTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSH
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCH
Confidence 999884 588999999999999999999975321 11111 1245688999999776444 6999988 5
Q ss_pred CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741 273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG 352 (457)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 352 (457)
+..+.+.+.... ...+++++..+.++.++++...+.+++..++.+++++++.+.|++ +|++.+..+.. ..
T Consensus 286 ~l~~~~~~~~~~------~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~i~~~~~~~---~~ 355 (421)
T 3l8a_A 286 SLRRKFQYRQLA------NNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEA-KTKIKVMEPEG---TY 355 (421)
T ss_dssp HHHHHHHHHHHH------TTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HCSCEEECCSB---SS
T ss_pred HHHHHHHHHHHh------cccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh-CCCceEeCCCe---eE
Confidence 554544433321 123467888888888888765556788999999999999999998 68888876432 22
Q ss_pred eEEEEEcc--ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741 353 NLNLSFAY--VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV 427 (457)
Q Consensus 353 ~~~~~~~~--~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~ 427 (457)
.+.+.++. .+..++...| .||.+.+|..|.. ...+++||+++ +++++|++++++|+
T Consensus 356 ~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRi~~~--~~~~~i~~~l~~l~ 416 (421)
T 3l8a_A 356 LVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGK-----------------EGKYFARLNVA--TPKNTVQEALSRII 416 (421)
T ss_dssp EEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCG-----------------GGTTEEEEECC--SCHHHHHHHHHHHH
T ss_pred EEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCC-----------------CCCCEEEEEec--CCHHHHHHHHHHHH
Confidence 22355543 3566776666 3999998876632 12389999998 58999999999999
Q ss_pred HHHH
Q 040741 428 KQVE 431 (457)
Q Consensus 428 ~~~~ 431 (457)
++++
T Consensus 417 ~~l~ 420 (421)
T 3l8a_A 417 SVFG 420 (421)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 8865
No 71
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.98 E-value=5.3e-32 Score=275.48 Aligned_cols=341 Identities=17% Similarity=0.178 Sum_probs=251.6
Q ss_pred CCcEEecCCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCc----EEEeCChHH
Q 040741 56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETARSQIADLIGASPKE----IIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~----i~~t~g~T~ 129 (457)
.+.|.| .++.+++++++++++.+.+.+.+ |+|+++.+..+....+..+.+++++++++|+++++ +++++|+ +
T Consensus 44 ~~~i~L-~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~ 121 (483)
T 1rv3_A 44 RVGLEL-IASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-P 121 (483)
T ss_dssp HSSEEC-CTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-H
T ss_pred hcCeEE-EcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-H
Confidence 345666 34567899999999999998766 67765444434444566677889999999998654 6666655 8
Q ss_pred HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHH--------HHHHHhcC--cEEEEEeCC-CCCCCCHHHHHHhcC-CCc
Q 040741 130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDS--------CRHLQQEG--FEITYLPVG-ADGIVNLDELRAAIR-PDT 197 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~--------~~~~~~~G--~~v~~v~~~-~~~~~d~~~le~~i~-~~t 197 (457)
++.+++.++. ++||+|++++++|.++... +... | ++++.++++ .++.+|+++|+++++ ++|
T Consensus 122 an~~~~~all----~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~---G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~t 194 (483)
T 1rv3_A 122 ANFAVYTALV----EPHGRIMGLDLPDGGHLTHGFMTDKKKISAT---SIFFESMAYKVNPDTGYIDYDRLEENARLFHP 194 (483)
T ss_dssp HHHHHHHHHT----CTTCEEEEECGGGTCCGGGCCBCSSCBCSHH---HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCC
T ss_pred HHHHHHHHhc----CCCCEEEEecCccCcCcchhhhhcccCcccc---cceEEEEECccccCCCcCCHHHHHHHHhhcCC
Confidence 8888888887 8999999999999887642 2222 4 455566556 568899999999998 789
Q ss_pred eEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCC---cccEEEecccc-ccCCCCceEEEEecC
Q 040741 198 GLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKW---NVSLMSLSGHK-IYGPKGVGALYMRRR 273 (457)
Q Consensus 198 ~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~---~~Di~~~s~~K-~~g~~G~G~l~~~~~ 273 (457)
++|++ +++|++ .+.|+++|.++|+++|+++++|++|+.|..+.+.... ++|++++|+|| +.||.| |+++++++
T Consensus 195 klIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~~~~~ 271 (483)
T 1rv3_A 195 KLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFYRRG 271 (483)
T ss_dssp SEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEEECS
T ss_pred cEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEEEcch
Confidence 99999 888887 8899999999999999999999999876554443333 68999999999 568887 99999986
Q ss_pred CCccccccccCCc----c-------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeE
Q 040741 274 PRIRVEPLINGGG----Q-------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVV 341 (457)
Q Consensus 274 ~~~~~~~~~~~~~----~-------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 341 (457)
... +. ...|.. . ......|+++...++++..|++.... ++++..++..++++++.+.|.+ + ++.
T Consensus 272 ~~~-~~-~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~ 347 (483)
T 1rv3_A 272 VRS-VD-PKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE-L-GYK 347 (483)
T ss_dssp BCC---------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-T-TCE
T ss_pred hhh-hc-cccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh-c-CCE
Confidence 431 11 000000 0 00112568888888888888887753 6889999999999999999999 5 888
Q ss_pred EeCCCCCcccceEEEEEc--cccchHHHhcc--cCeEec----ccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC
Q 040741 342 VNGSMERRYIGNLNLSFA--YVEGESLLMGL--KEVAVS----SGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF 413 (457)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l--~~i~~~----~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~ 413 (457)
+..+... ...+.+.+. +.++.++...| .||.+. +|..|. ...+.|||+++.+
T Consensus 348 ~~~~~~~--~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~------------------~~~~~iRis~~~~ 407 (483)
T 1rv3_A 348 IVTGGSD--NHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSA------------------LRPSGLRLGTPAL 407 (483)
T ss_dssp EGGGSCS--SSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCT------------------TSCCEEEEECHHH
T ss_pred eccCCCC--CceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcC------------------CCCceEEeecCCc
Confidence 8764221 123344543 34556666555 588887 665332 1237999999876
Q ss_pred CC----HHHHHHHHHHHHHHHHH
Q 040741 414 TT----EAEVDRAIELTVKQVEK 432 (457)
Q Consensus 414 ~t----~edid~~~~~l~~~~~~ 432 (457)
++ ++|+++++++|+++++.
T Consensus 408 ~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 408 TSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHh
Confidence 66 99999999999999876
No 72
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.98 E-value=1.4e-31 Score=265.23 Aligned_cols=324 Identities=16% Similarity=0.130 Sum_probs=240.6
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CC--CCCcEEEeCCh
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GA--SPKEIIFTSGA 127 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~i~~t~g~ 127 (457)
..++++|+.+.+. +.++.+.+++.+.+.... . .| +. .....++++.+++++ |+ +++++++|+|+
T Consensus 40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~----~y--~~--~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~ 110 (389)
T 1o4s_A 40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQKGE-V----KY--TD--PRGIYELREGIAKRIGERYKKDISPDQVVVTNGA 110 (389)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHTTCC-C----CC--CC--TTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHhcCC-C----CC--CC--CCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCH
Confidence 3567888887766 568999999999886421 0 11 10 012345666666665 75 56789999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEecc
Q 040741 128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAV 205 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~ 205 (457)
|+|+.++++++. ++|++|+++.+.|+++...++.. |.+++.++.+. ++.+|+++|++++++++++|+++++
T Consensus 111 t~al~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p 183 (389)
T 1o4s_A 111 KQALFNAFMALL----DPGDEVIVFSPVWVSYIPQIILA---GGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSP 183 (389)
T ss_dssp HHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESS
T ss_pred HHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCC
Confidence 999999999987 89999999999999998877655 99999999874 4578999999999999999999999
Q ss_pred ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc---cc---CCC-CcccEEEeccccccCCCC--ceEEEEecC
Q 040741 206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP---VD---VEK-WNVSLMSLSGHKIYGPKG--VGALYMRRR 273 (457)
Q Consensus 206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~---~~---~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~ 273 (457)
+||+|.+.| +++|.++|++||+++|+|++|+.+... .+ +.. .+.|+++.|++|.+|++| +|+++++++
T Consensus 184 ~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~ 263 (389)
T 1o4s_A 184 NNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEK 263 (389)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCHH
Confidence 999999988 899999999999999999999865431 11 111 367999999999888666 899999877
Q ss_pred CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741 274 PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN 353 (457)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 353 (457)
..+++.....++ . .+.+.....++..+++ .++++..++++++++++.+.|++ + ++.+..+. .+.+
T Consensus 264 ~~~~l~~~~~~~------~-~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~---~~~~ 328 (389)
T 1o4s_A 264 VATAVSKIQSHT------T-SCINTVAQYAALKALE---VDNSYMVQTFKERKNFVVERLKK-M-GVKFVEPE---GAFY 328 (389)
T ss_dssp HHHHHHHHHHHH------T-CSCCHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCS---BSSE
T ss_pred HHHHHHHHhhhc------c-cCCCHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh-c-CCeeecCC---cceE
Confidence 655554433221 1 1334444444434433 23788889999999999999998 5 66665422 1333
Q ss_pred EEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741 354 LNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 354 ~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~ 430 (457)
+.+.++ .+..++...| +||.+.+|..|.. .+++||+++. +++++++++++|++++
T Consensus 329 ~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~-------------------~~~~Ris~~~--~~~~l~~~l~~l~~~l 386 (389)
T 1o4s_A 329 LFFKVR-GDDVKFCERLLEEKKVALVPGSAFLK-------------------PGFVRLSFAT--SIERLTEALDRIEDFL 386 (389)
T ss_dssp EEEECS-SCHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred EEEeCC-CCHHHHHHHHHHHCCEEEeCchhcCC-------------------CCeEEEEEeC--CHHHHHHHHHHHHHHH
Confidence 444554 4556666655 4899988865432 1699999984 8999999999999876
Q ss_pred H
Q 040741 431 E 431 (457)
Q Consensus 431 ~ 431 (457)
+
T Consensus 387 ~ 387 (389)
T 1o4s_A 387 N 387 (389)
T ss_dssp T
T ss_pred h
Confidence 4
No 73
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.98 E-value=2.6e-31 Score=265.36 Aligned_cols=341 Identities=15% Similarity=0.155 Sum_probs=247.7
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CC--CC-CcEEEeCC
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GA--SP-KEIIFTSG 126 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~-~~i~~t~g 126 (457)
+.++++|..+.+. +.++.+.+++.+.+.... .+.|+ ......++++.+++++ |. ++ +++++|+|
T Consensus 36 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~------~~~y~--~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g 107 (412)
T 2x5d_A 36 GEDIIDLSMGNPDGPTPPHIVEKLCTVAQRED------THGYS--TSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIG 107 (412)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHTC-----------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESC
T ss_pred CCCEEecCCCCCCCCCCHHHHHHHHHHHhCCC------CCCCC--CCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCC
Confidence 3456777776655 467999999988875320 11111 1123456777777777 85 55 68999999
Q ss_pred hHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-C-CCCHHHHHHhcCCCceEEEEec
Q 040741 127 ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-G-IVNLDELRAAIRPDTGLISVMA 204 (457)
Q Consensus 127 ~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~-~~d~~~le~~i~~~t~li~i~~ 204 (457)
+|+|+.++++++. ++|++|++..+.|+++...++.. |.+++.++.+.+ + .+|++++++++++++++|++++
T Consensus 108 ~~~a~~~~~~~~~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~ 180 (412)
T 2x5d_A 108 SKEGLAHLMLATL----DHGDTILVPNPSYPIHIYGAVIA---GAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGF 180 (412)
T ss_dssp HHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHHH---TCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEES
T ss_pred hHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECC
Confidence 9999999999987 89999999999999998887766 999999998754 3 3789999999998899999999
Q ss_pred cccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccCCC----CcccEEEeccccccCCCC--ceEEEEe
Q 040741 205 VNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDVEK----WNVSLMSLSGHKIYGPKG--VGALYMR 271 (457)
Q Consensus 205 ~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~~----~~~Di~~~s~~K~~g~~G--~G~l~~~ 271 (457)
++||+|.+.| +++|.++|++||+++|+|++|+.+.. ..++.. .+.|+++.|++|.+|++| +|+++++
T Consensus 181 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 260 (412)
T 2x5d_A 181 PSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGN 260 (412)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEEC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcC
Confidence 9999999987 67899999999999999999986532 112221 367899999999888555 7999998
Q ss_pred cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCccc
Q 040741 272 RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYI 351 (457)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 351 (457)
++.++++...... ...+.+.....++..+++...+.+++..++++++++++.+.|.+ + ++.+..+. .+
T Consensus 261 ~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~---~g 328 (412)
T 2x5d_A 261 PELVSALARIKSY-------HDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLRE-A-GWMVENPK---AS 328 (412)
T ss_dssp HHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHH-H-TCCCCCCS---BS
T ss_pred HHHHHHHHHHHhh-------hccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEecCCC---ee
Confidence 7665555443221 12356666666666666543345788888999999999999988 4 66554321 12
Q ss_pred ceEEEEEc-cc---cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741 352 GNLNLSFA-YV---EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE 424 (457)
Q Consensus 352 ~~~~~~~~-~~---~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~ 424 (457)
.++.+.++ .. +..++...| +||.+.+|..|.. ...+++||+++. ++++++++++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRis~~~--~~~~l~~~l~ 389 (412)
T 2x5d_A 329 MYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGD-----------------YGDDHVRFALIE--NRDRLRQAVR 389 (412)
T ss_dssp SEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHH
T ss_pred eEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCC-----------------CCCCeEEEEecC--CHHHHHHHHH
Confidence 34455554 22 456676665 3999999876632 123799999997 7999999999
Q ss_pred HHHHHHHHHHhcChhHH
Q 040741 425 LTVKQVEKLREMSPLYE 441 (457)
Q Consensus 425 ~l~~~~~~~~~~~~~~~ 441 (457)
+|++++++++..+|..+
T Consensus 390 ~l~~~l~~~~~~~~~~~ 406 (412)
T 2x5d_A 390 GIKAMFRADGLLSPQRK 406 (412)
T ss_dssp HHHHHHHHTTCC-----
T ss_pred HHHHHHHhcCCcChHHH
Confidence 99999999888887643
No 74
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.98 E-value=1.4e-30 Score=267.28 Aligned_cols=353 Identities=16% Similarity=0.154 Sum_probs=241.3
Q ss_pred CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741 56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI 135 (457)
Q Consensus 56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al 135 (457)
..+.||++..++..++.++..+.. . +.|+....+..+....+...++++++++++|+++++++||+|||+|+.+++
T Consensus 107 ~~p~~~~~~~~~~~~~~~~~~~l~---~-~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al 182 (515)
T 2jis_A 107 GHPRFFNQLFSGLDPHALAGRIIT---E-SLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAV 182 (515)
T ss_dssp TSTTEESSSCCCCCHHHHHHHHHH---H-HHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEeeCCCCHHHHHHHHHH---H-HhccCCCchhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHH
Confidence 366799988777766666653332 2 234444344445555677888999999999998778999999999999999
Q ss_pred HHhhhhh----cCCCC------EEEEcCCCCcchHHHHHHHHhcCc---EEEEEeCCCCCCCCHHHHHHhcCC------C
Q 040741 136 KGVMHFY----KDKKR------HVITTQTEHKCVLDSCRHLQQEGF---EITYLPVGADGIVNLDELRAAIRP------D 196 (457)
Q Consensus 136 ~~~~~~~----~~~g~------~vi~~~~~h~~~~~~~~~~~~~G~---~v~~v~~~~~~~~d~~~le~~i~~------~ 196 (457)
.++...+ +.+|+ .|+++...|+++..+++.+ |. +++.+|.+.++.+|+++|+++|++ +
T Consensus 183 ~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~---g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~ 259 (515)
T 2jis_A 183 NLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL---GLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAV 259 (515)
T ss_dssp HHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT---TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc---CCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCC
Confidence 8875321 12354 8999999999999988876 55 899999988899999999999975 4
Q ss_pred ceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-----CCCC-cccEEEecccccc-CCCCceEEE
Q 040741 197 TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-----VEKW-NVSLMSLSGHKIY-GPKGVGALY 269 (457)
Q Consensus 197 t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-----~~~~-~~Di~~~s~~K~~-g~~G~G~l~ 269 (457)
+++|++++++|++|.+.|+++|+++|++||+++|+|++++.+..+.+ +... ++|++++++||++ +|.|+|+++
T Consensus 260 ~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~ 339 (515)
T 2jis_A 260 PFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALL 339 (515)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEE
T ss_pred cEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEE
Confidence 89999999999999999999999999999999999999998876543 3333 7899999999965 588899999
Q ss_pred EecC--CCcc----ccccccCCccc--cccccCCCChh-----HHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhh
Q 040741 270 MRRR--PRIR----VEPLINGGGQE--RGIRSGTLPTP-----LIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKE 335 (457)
Q Consensus 270 ~~~~--~~~~----~~~~~~~~~~~--~~~~~~t~~~~-----~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~ 335 (457)
++++ .+.+ ..++..++... ..+..++.+.. ...++..++..+ .++++++.++..++++++.+.|.+
T Consensus 340 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~ 419 (515)
T 2jis_A 340 LQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKK 419 (515)
T ss_dssp ESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9976 3332 12333222110 00111111100 011222223322 346888999999999999999999
Q ss_pred cCCCeEEeCCCCCcccceEEEEEccc------cchHHHh-------cccCeEecccCccCCCCCChhHHHHHcCCCc-cC
Q 040741 336 KLDGVVVNGSMERRYIGNLNLSFAYV------EGESLLM-------GLKEVAVSSGSACTSASLEPSYVLRALGVDE-DM 401 (457)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-------~l~~i~~~~g~~~~~~~~~~~~~l~~~g~~~-~~ 401 (457)
+++++++.++. .+.+.|.+... +..++.. .+.+.....|..|.. ... ..
T Consensus 420 -~~g~~~~~~~~---~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~-------------~~~~~~ 482 (515)
T 2jis_A 420 -REGFELVMEPE---FVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIG-------------YQPHGT 482 (515)
T ss_dssp -STTEEESSCCS---SSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEE-------------EEEETT
T ss_pred -CCCEEEeCCCC---eeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-------------EEEECC
Confidence 89999987532 24445544211 1112111 111222222322210 000 01
Q ss_pred CCCeEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 040741 402 AHTSIRFGI-GRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 402 ~~~~iRi~~-~~~~t~edid~~~~~l~~~~~~ 432 (457)
..+.+||++ +..+|++||++++++|++++++
T Consensus 483 ~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 483 RGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 126899999 7899999999999999987653
No 75
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.98 E-value=5.9e-31 Score=262.53 Aligned_cols=335 Identities=13% Similarity=0.104 Sum_probs=246.4
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCCh
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEIIFTSGA 127 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i~~t~g~ 127 (457)
+.++++|+.+.+. +.++++.+++ +.+.... ..|+. .....++++.++++++ ++++++++|+||
T Consensus 42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~-------~~y~~--~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 111 (409)
T 2gb3_A 42 GVRIHHLNIGQPDLKTPEVFFERI-YENKPEV-------VYYSH--SAGIWELREAFASYYKRRQRVDVKPENVLVTNGG 111 (409)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHH-HHTCCSS-------CCCCC--TTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHH
T ss_pred CCCEEeccCCCCCCCCCHHHHHHH-HHHhcCC-------CCCCC--CCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCH
Confidence 3567888887776 5678999999 8775321 00110 1224466666666663 456789999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEecc
Q 040741 128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAV 205 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~ 205 (457)
|+|+.++++++. ++|++|+++.+.|+++..+++.. |.+++.++.+. +..+ +++|++++++++++|+++++
T Consensus 112 t~a~~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p 183 (409)
T 2gb3_A 112 SEAILFSFAVIA----NPGDEILVLEPFYANYNAFAKIA---GVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNP 183 (409)
T ss_dssp HHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHHHHH---TCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESS
T ss_pred HHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCC
Confidence 999999999987 89999999999999998887766 99999999874 2334 89999999989999999999
Q ss_pred ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---ccc-CCC-CcccEEEeccccccCCCC--ceEEEEec-CC
Q 040741 206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVD-VEK-WNVSLMSLSGHKIYGPKG--VGALYMRR-RP 274 (457)
Q Consensus 206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~-~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~-~~ 274 (457)
+||+|.+.| +++|.++|++||+++|+|++|+.+.. ... +.. .+.|+++.|++|.+|++| +|++++++ +.
T Consensus 184 ~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l 263 (409)
T 2gb3_A 184 CNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEEL 263 (409)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHH
Confidence 999999976 88999999999999999999986543 122 222 257999999999888666 89999987 65
Q ss_pred CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEE-eCCCCCcccce
Q 040741 275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVV-NGSMERRYIGN 353 (457)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~ 353 (457)
.+++......+ . +++.....++.++++.....+++..++++++++++.+.|++ + ++.+ ..+ .. +.+
T Consensus 264 ~~~l~~~~~~~-------~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-~~--~~~ 330 (409)
T 2gb3_A 264 ISHAMKLAQGR-------L-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE-H-GLKRFTKP-SG--AFY 330 (409)
T ss_dssp HHHHHHHHHHS-------C-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCBCCC-SB--SSE
T ss_pred HHHHHHHHhcc-------C-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-c-CceeeeCC-Ce--eEE
Confidence 55554433211 1 45666666666666443445788888999999999999998 5 6665 432 21 333
Q ss_pred EEEEEccccchHHHhcc--c------CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741 354 LNLSFAYVEGESLLMGL--K------EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL 425 (457)
Q Consensus 354 ~~~~~~~~~~~~~~~~l--~------~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~ 425 (457)
+.+.+++.+..++...| + ||.+.+|..|... .....+++||+++ ++++++++++++
T Consensus 331 ~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~--------------~~~~~~~iRis~~--~~~e~i~~~~~~ 394 (409)
T 2gb3_A 331 ITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLT--------------PGLGKKEIRIACV--LEKDLLSRAIDV 394 (409)
T ss_dssp EEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSS--------------TTTTSSEEEEECC--SCHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCC--------------CCCCCCEEEEEeC--CCHHHHHHHHHH
Confidence 44455444556666665 5 8999888755321 1122479999998 789999999999
Q ss_pred HHHHHHHHHhc
Q 040741 426 TVKQVEKLREM 436 (457)
Q Consensus 426 l~~~~~~~~~~ 436 (457)
|++++++++.-
T Consensus 395 l~~~l~~~~~~ 405 (409)
T 2gb3_A 395 LMEGLKMFCSS 405 (409)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHhhhc
Confidence 99999887653
No 76
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.98 E-value=2.2e-31 Score=264.53 Aligned_cols=339 Identities=13% Similarity=0.144 Sum_probs=246.3
Q ss_pred CCCcEEecCCCCCC---CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHH
Q 040741 55 AGRPLYLDMQATTP---VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESN 131 (457)
Q Consensus 55 ~~~~i~l~~~~~~~---~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~ 131 (457)
..++++|+.+.+.+ .++++.+++.+.+..... ...+|.......++++.+++++|++++++++|+|+++|+
T Consensus 31 ~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~------~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al 104 (397)
T 2zyj_A 31 RPGILSFAGGLPAPELFPKEEAAEAAARILREKGE------VALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQAL 104 (397)
T ss_dssp STTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHH------HHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHH
T ss_pred CCCceecCCCCCCchhCCHHHHHHHHHHHHHhcch------hhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHH
Confidence 34678887765542 568899999888764210 000111112457899999999998888999999999999
Q ss_pred HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEE-EEecccccc
Q 040741 132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLI-SVMAVNNEI 209 (457)
Q Consensus 132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li-~i~~~~~~~ 209 (457)
.++++++. ++|++|++..+.|.++...++.. |.+++.++.+.++ +|++++++++++ ++++| ++++++||+
T Consensus 105 ~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~~npt 176 (397)
T 2zyj_A 105 DLVGKVFL----DEGSPVLLEAPSYMGAIQAFRLQ---GPRFLTVPAGEEG-PDLDALEEVLKRERPRFLYLIPSFQNPT 176 (397)
T ss_dssp HHHHHHHC----CTTCEEEEEESCCHHHHHHHHTT---CCEEEEEEEETTE-ECHHHHHHHHHHCCCSCEEECCBSCTTT
T ss_pred HHHHHHhC----CCCCEEEEeCCCcHHHHHHHHHc---CCEEEecCcCCCC-CCHHHHHHHHhhcCCeEEEECCCCcCCC
Confidence 99999987 88999999999999988776554 9999999887655 899999999975 78877 579999999
Q ss_pred ccccCh---HHHHHHHHhcCCcEEEehhhhcCCC----cccCCCCcc------cEEEeccccccCCCC--ceEEEEecCC
Q 040741 210 GVIQPM---EEIGQICKEFKIPFHTDAAQALGKI----PVDVEKWNV------SLMSLSGHKIYGPKG--VGALYMRRRP 274 (457)
Q Consensus 210 G~~~~l---~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~~~~~------Di~~~s~~K~~g~~G--~G~l~~~~~~ 274 (457)
|.+.|. ++|.++|++||+++|+|++|+.+.. +.++..++. ++++.|+||.+| +| +|+++++++.
T Consensus 177 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~ 255 (397)
T 2zyj_A 177 GGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPEA 255 (397)
T ss_dssp CCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCHHH
Confidence 999885 4899999999999999999986432 222222222 388999999888 44 7999998766
Q ss_pred CccccccccCCccccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCC-CeEEeCCCCCcccc
Q 040741 275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLD-GVVVNGSMERRYIG 352 (457)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~ 352 (457)
.+++...... ... +.+.....++..+++... +.+++..++++++++++.+.|++.+| ++.+..+.. +.
T Consensus 256 ~~~l~~~~~~------~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~---g~ 325 (397)
T 2zyj_A 256 LQKLVQAKQG------ADL-HTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKG---GM 325 (397)
T ss_dssp HHHHHHHHHH------HHS-SCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSB---SS
T ss_pred HHHHHHHHHh------hcC-CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCc---cE
Confidence 5555433221 112 235555555555655322 34677888888999999999987446 577754321 34
Q ss_pred eEEEEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741 353 NLNLSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ 429 (457)
Q Consensus 353 ~~~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~ 429 (457)
++.+.++ +.+..++...| +||.+.+|..|... ....+++||+++.. +++++++++++|+++
T Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~ 389 (397)
T 2zyj_A 326 FVWMELPKGLSAEGLFRRALEENVAFVPGGPFFAN---------------GGGENTLRLSYATL-DREGIAEGVRRLGRA 389 (397)
T ss_dssp EEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTT---------------SCCTTEEEEECSSS-CHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCC---------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHH
Confidence 4555554 24456676666 69999988766431 11237999999875 899999999999999
Q ss_pred HHHHH
Q 040741 430 VEKLR 434 (457)
Q Consensus 430 ~~~~~ 434 (457)
++++.
T Consensus 390 l~~~~ 394 (397)
T 2zyj_A 390 LKGLL 394 (397)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 77
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.98 E-value=4e-30 Score=254.44 Aligned_cols=331 Identities=14% Similarity=0.072 Sum_probs=242.8
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCC-cEEEeCChHHH
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPK-EIIFTSGATES 130 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~-~i~~t~g~T~a 130 (457)
.+.++|+.+.+. +.++++.+++.+.+... .+++. .....+..+.+.+.+.+++| ++++ ++++|+|+|+|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~------~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 103 (386)
T 1u08_A 30 HQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAP------MTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEA 103 (386)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCC------TTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCC------CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHH
Confidence 567899887765 57899999999988641 11111 11112333334444444457 4577 89999999999
Q ss_pred HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEecccccc
Q 040741 131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEI 209 (457)
Q Consensus 131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~ 209 (457)
+.++++++. ++|++|++..+.|+++...++.. |.+++.++.+. ++.+|++++++++++++++|++++++||+
T Consensus 104 ~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~npt 176 (386)
T 1u08_A 104 LYAAITALV----RNGDEVICFDPSYDSYAPAIALS---GGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPS 176 (386)
T ss_dssp HHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred HHHHHHHhC----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCC
Confidence 999999987 88999999999999988776655 99999999875 46799999999999899999999999999
Q ss_pred ccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccCC----CCcccEEEeccccccCCCC--ceEEEEecCCCc
Q 040741 210 GVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDVE----KWNVSLMSLSGHKIYGPKG--VGALYMRRRPRI 276 (457)
Q Consensus 210 G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~----~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~ 276 (457)
|.+.| +++|.++|++||+++|+|++|+.... ...+. ..+.|+++.|+||.+|++| +|+++++++..+
T Consensus 177 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~ 256 (386)
T 1u08_A 177 ATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISA 256 (386)
T ss_dssp CCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHH
T ss_pred CccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHHHHH
Confidence 99987 68899999999999999999985321 11221 2367999999999888666 899999877655
Q ss_pred cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741 277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356 (457)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (457)
++...... ...+.+.....++..+++...+.+++..++++++++++.+.|++ + ++.+..+.. +.++.+
T Consensus 257 ~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~ 324 (386)
T 1u08_A 257 EIRKVHQY-------LTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE-S-RLEILPCEG---TYFLLV 324 (386)
T ss_dssp HHHHHHHH-------HTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS-S-SCEECCCCB---SSEEEE
T ss_pred HHHHHHHh-------hccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCc---eEEEEE
Confidence 55443211 12245566666666677654445788889999999999999998 5 777764321 345556
Q ss_pred EEcc---ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741 357 SFAY---VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK 428 (457)
Q Consensus 357 ~~~~---~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~ 428 (457)
.++. .+..++...+ +||.+.+|..|... ....+++||+++. ++++|++++++|++
T Consensus 325 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~--~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 325 DYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCAD---------------PFPHKLIRLCFAK--KESTLLAAAERLRQ 385 (386)
T ss_dssp ECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSS---------------CCCSCEEEEECCS--CHHHHHHHHHHHTT
T ss_pred ecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCC---------------CCCCCEEEEEEcC--CHHHHHHHHHHHhh
Confidence 6654 2456666644 49999988654321 0123799999984 79999999998864
No 78
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.98 E-value=3.7e-31 Score=263.41 Aligned_cols=308 Identities=12% Similarity=0.088 Sum_probs=227.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCc
Q 040741 93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGF 171 (457)
Q Consensus 93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~ 171 (457)
+.|++...+...++|+++++++|.+ ++++++|||+|++++++++. ++||+||++.+.|.+....+. .++..|+
T Consensus 74 ~~y~r~~~p~~~~le~~lA~l~g~~--~~i~~ssGt~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~ 147 (415)
T 2fq6_A 74 LFYGRRGTLTHFSLQQAMCELEGGA--GCVLFPCGAAAVANSILAFI----EQGDHVLMTNTAYEPSQDFCSKILSKLGV 147 (415)
T ss_dssp CCCTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred ccccCCCCchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence 3445445578899999999999985 37777899999999999987 899999999999999887764 3456799
Q ss_pred EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHh--cCCcEEEehhhhcCCCcccCCCCcc
Q 040741 172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE--FKIPFHTDAAQALGKIPVDVEKWNV 249 (457)
Q Consensus 172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~--~~v~li~D~a~~~g~~~~~~~~~~~ 249 (457)
++++++.+ |+++++++|+++|++|++++++||+|.+.|+++|+++|++ +|+++|+|++|+.+.....+ ..++
T Consensus 148 ~v~~v~~~-----d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~-~~g~ 221 (415)
T 2fq6_A 148 TTSWFDPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL-DFGI 221 (415)
T ss_dssp EEEEECTT-----CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG-GGTC
T ss_pred EEEEECCC-----CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc-ccCC
Confidence 99999865 8999999999999999999999999999999999999999 99999999999865321112 3578
Q ss_pred cEEEeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741 250 SLMSLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH 326 (457)
Q Consensus 250 Di~~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~ 326 (457)
|++++|+||++|+.| +|+++++++..+++...... ..+..++.....+..++ +.+..+.++..+++
T Consensus 222 Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~-------~G~~~~~~~a~~~~~~l----~~l~~r~~~~~~n~ 290 (415)
T 2fq6_A 222 DVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYL-------MGQMVDADTAYITSRGL----RTLGVRLRQHHESS 290 (415)
T ss_dssp SEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHH-------TTCCCCHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred eEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhh----hHHHHHHHHHHHHH
Confidence 999999999888765 69999887654444332210 11233333233222233 24566677778888
Q ss_pred HHHHHHHhhcCCCeEEe-CCC--C-----------CcccceEEEEEccc----cchHHHhcc--cCeEecccCccCCCCC
Q 040741 327 DRLLNGIKEKLDGVVVN-GSM--E-----------RRYIGNLNLSFAYV----EGESLLMGL--KEVAVSSGSACTSASL 386 (457)
Q Consensus 327 ~~l~~~l~~~~~~~~~~-~~~--~-----------~~~~~~~~~~~~~~----~~~~~~~~l--~~i~~~~g~~~~~~~~ 386 (457)
+++.+.|++ .|.+.-+ -+. . ...++++.|.+++. +...++..+ .+++++.|+.|+....
T Consensus 291 ~~l~~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~ 369 (415)
T 2fq6_A 291 LKVAEWLAE-HPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILA 369 (415)
T ss_dssp HHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSSSCEEEE
T ss_pred HHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCCceeEEe
Confidence 899999988 6665422 111 0 13577888888752 345666666 4788899999986543
Q ss_pred -Ch---hHHHH--HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741 387 -EP---SYVLR--ALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK 428 (457)
Q Consensus 387 -~~---~~~l~--~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~ 428 (457)
.| ++++. ++|+. ++.|||+++..+++++|+.+.++|++
T Consensus 370 ~~p~~~s~~~~~~~~g~~----~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 370 NQPEHIAAIRPQGEIDFS----GTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp ECHHHHHTTCTTCCCCCC----SCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred cCCCccccccchhhcCCC----CCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 23 22221 24543 38999999999989999988888864
No 79
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.98 E-value=2.1e-30 Score=258.97 Aligned_cols=335 Identities=16% Similarity=0.116 Sum_probs=248.6
Q ss_pred CCcEEecCCCC-----CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------------CCC
Q 040741 56 GRPLYLDMQAT-----TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------------ASP 118 (457)
Q Consensus 56 ~~~i~l~~~~~-----~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------------~~~ 118 (457)
.+.++|+.+.+ .++++++.+++.+.+.... .+.|+ ......++++.++++++ +++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~--~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~ 104 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE------CNGYF--PTVGSPEAREAVATWWRNSFVHKEELKSTIVK 104 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC------SSSCC--CTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCc------cCCcC--CCCCCHHHHHHHHHHHHhhhcccccCCCCCCc
Confidence 45688888764 4678999999999886421 01111 11235678888888887 677
Q ss_pred CcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCC
Q 040741 119 KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPD 196 (457)
Q Consensus 119 ~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~ 196 (457)
+++++|+|+|+|++++++++. ++|++|++..++|+++...++.. |.+++.++.+. ++.+|+++++++++++
T Consensus 105 ~~v~~~~g~~~al~~~~~~l~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 177 (416)
T 1bw0_A 105 DNVVLCSGGSHGILMAITAIC----DAGDYALVPQPGFPHYETVCKAY---GIGMHFYNCRPENDWEADLDEIRRLKDDK 177 (416)
T ss_dssp GGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEEEGGGTTEECHHHHHHHCCTT
T ss_pred ceEEEeCChHHHHHHHHHHhC----CCCCEEEEcCCCcHhHHHHHHHc---CcEEEEeecCcccCCCCCHHHHHHHhccC
Confidence 889999999999999999987 89999999999999988776655 99999998764 3568999999999999
Q ss_pred ceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcC----C----CcccCC---CCcccEEEeccccccCC
Q 040741 197 TGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALG----K----IPVDVE---KWNVSLMSLSGHKIYGP 262 (457)
Q Consensus 197 t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g----~----~~~~~~---~~~~Di~~~s~~K~~g~ 262 (457)
++++++++++||+|.+.| +++|.++|++||+++|+|++|+.. . ....+. ..+.++++.|++|.++.
T Consensus 178 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 257 (416)
T 1bw0_A 178 TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVV 257 (416)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSC
T ss_pred CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCC
Confidence 999999999999999999 899999999999999999999852 2 111222 12235788899998776
Q ss_pred CC--ceEEEEecC--CCccccccccCCccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcC
Q 040741 263 KG--VGALYMRRR--PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKL 337 (457)
Q Consensus 263 ~G--~G~l~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~ 337 (457)
+| +|+++++++ ..+++....... ....++++.....++..+++.. .+.+++..++++++++++.+.|++ +
T Consensus 258 ~Glr~G~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~ 332 (416)
T 1bw0_A 258 PGWRLGWLLYVDPHGNGPSFLEGLKRV----GMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE-C 332 (416)
T ss_dssp GGGCCEEEEEECTTCSCHHHHHHHHHH----HHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred CCceEEEEEeeCchhhHHHHHHHHHHH----hccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh-C
Confidence 55 899999874 444333211100 0123366777777777777632 345788889999999999999998 7
Q ss_pred CCeEEeCCCCCcccceEEEEEcc------ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEE
Q 040741 338 DGVVVNGSMERRYIGNLNLSFAY------VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRF 408 (457)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi 408 (457)
+++.+..+.. +.++.+.++. .+..++...| +||.+.+|..|.. .+++||
T Consensus 333 ~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-------------------~~~iRi 390 (416)
T 1bw0_A 333 IGLAPTMPRG---AMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA-------------------PGFTRL 390 (416)
T ss_dssp TTEEECCCCB---TTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEEE
T ss_pred CCCcccCCCe---eEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC-------------------CCeEEE
Confidence 8888765321 3444555542 2445565554 5999998875531 279999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 409 GIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 409 ~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
+++ ++++++++++++|.+++++.+
T Consensus 391 s~~--~~~e~l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 391 TTT--RPVEVYREAVERIKAFCQRHA 414 (416)
T ss_dssp ECC--SCHHHHHHHHHHHHHHHHHHB
T ss_pred Eec--CCHHHHHHHHHHHHHHHHHhh
Confidence 996 579999999999999988754
No 80
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.98 E-value=2.3e-30 Score=255.96 Aligned_cols=328 Identities=16% Similarity=0.175 Sum_probs=243.4
Q ss_pred CcEEecCCCCC----CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHH
Q 040741 57 RPLYLDMQATT----PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESN 131 (457)
Q Consensus 57 ~~i~l~~~~~~----~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~ 131 (457)
+..|+|+.++. +.++++.+++.+.+... .+++. ..+.+...+...++++.+++++|++ +.+++++||+|+
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~---~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGt~a~ 112 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGG---SGHVSGYSVVHQALEEELAEWLGYS--RALLFISGFAAN 112 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCS---BTTTTCCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHH
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCC---cCcccCChHHHHHHHHHHHHHhCCC--cEEEeCCcHHHH
Confidence 44577776643 47899999999998752 11211 1121122367889999999999985 477777789999
Q ss_pred HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCC---ceEEEEeccccc
Q 040741 132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPD---TGLISVMAVNNE 208 (457)
Q Consensus 132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~---t~li~i~~~~~~ 208 (457)
..+++++. ++|+.|+++.++|+++..+++.. |.+++.+|. .|++++++++++. +++|++++++||
T Consensus 113 ~~~~~~~~----~~gd~v~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~v~~~~~~np 180 (384)
T 1bs0_A 113 QAVIAAMM----AKEDRIAADRLSHASLLEAASLS---PSQLRRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSM 180 (384)
T ss_dssp HHHHHHHC----CTTCEEEEETTCCHHHHHHHHTS---SSEEEEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTT
T ss_pred HHHHHHhC----CCCcEEEEcccccHHHHHHHHHc---CCCEEEeCC-----CCHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 99999887 89999999999999988877654 999999884 3899999988653 789999999999
Q ss_pred cccccChHHHHHHHHhcCCcEEEehhhhcCCCc-----c-cCCCCcccEEEeccccccCCCCceEEEEecCCCccccccc
Q 040741 209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP-----V-DVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLI 282 (457)
Q Consensus 209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~-----~-~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~ 282 (457)
+|.+.|+++|.++|++||+++|+|++|+.+... + .....++|+++.|+||.+|++| |+++++++..+++....
T Consensus 181 tG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~ 259 (384)
T 1bs0_A 181 DGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFA 259 (384)
T ss_dssp TCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHC
T ss_pred CCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhccC-cEEEeCHHHHHHHHHhc
Confidence 999999999999999999999999999876432 1 1111357999999999999887 99999876655544321
Q ss_pred cCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-
Q 040741 283 NGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY- 360 (457)
Q Consensus 283 ~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 360 (457)
..+ ....+++...+.++.++++...+ .+++..++++++++++.+.|++ + ++.+... ...++.+.++.
T Consensus 260 ~~~-----~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~----~~~~~~~~~~~~ 328 (384)
T 1bs0_A 260 RHL-----IYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD-L-PFTLADS----CSAIQPLIVGDN 328 (384)
T ss_dssp HHH-----HSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-S-SCEECSC----CSSBCCEEEESH
T ss_pred hhh-----hcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh-c-CCcccCC----CCCEEEEEeCCH
Confidence 111 01125677777777778887664 5678889999999999999998 5 6776531 13333345542
Q ss_pred ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741 361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ 429 (457)
Q Consensus 361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~ 429 (457)
.+..++...| +||.+.++..+.. ....+++||+++..++++++++++++|+++
T Consensus 329 ~~~~~l~~~l~~~gi~v~~~~~~~~----------------~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 329 SRALQLAEKLRQQGCWVTAIRPPTV----------------PAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp HHHHHHHHHHHHTTEECCEECTTSS----------------CTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcEEEeecCCCC----------------CCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 3345666665 6999887764311 113479999999988999999999999864
No 81
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.98 E-value=4.1e-31 Score=262.73 Aligned_cols=340 Identities=12% Similarity=0.082 Sum_probs=242.4
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK 136 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~ 136 (457)
...+.|+.+++.+.+++.+++..+ .++.+ .+.++....+...++++++++++|.+ +.+++++|++|++++++
T Consensus 26 ~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~ 97 (398)
T 2rfv_A 26 ALSTPIFQTSTFVFDSAEQGAARF-----ALEES-GYIYTRLGNPTTDALEKKLAVLERGE--AGLATASGISAITTTLL 97 (398)
T ss_dssp CSSCCCCCCSBCCCSSHHHHHHHC-----------CCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHH
T ss_pred CcCCCCcCCCccccCCHHHHHHhh-----cCCCC-CCceeCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH
Confidence 445778888888888888887632 12221 23334434578899999999999986 47777789999999999
Q ss_pred HhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccCh
Q 040741 137 GVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM 215 (457)
Q Consensus 137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l 215 (457)
++. ++|++|+++.+.|+++...++. +...|.+++.++.+ |++++++++++++++|++++++||+|.+.|+
T Consensus 98 ~~~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l 168 (398)
T 2rfv_A 98 TLC----QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMRPETKVVYIETPANPTLSLVDI 168 (398)
T ss_dssp HHC----CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTTEEEEEEESSBTTTTBCCCH
T ss_pred HHh----CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCH
Confidence 987 8999999999999999887642 25569999999875 8999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-CCC--ceEEEEecCCCc-cccccccCCcccccc
Q 040741 216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKG--VGALYMRRRPRI-RVEPLINGGGQERGI 291 (457)
Q Consensus 216 ~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g-~~G--~G~l~~~~~~~~-~~~~~~~~~~~~~~~ 291 (457)
++|.++|++||+++|+|++|+.+...... ..+.|+++.|+||++| |.+ +|+++++++.++ .+.+...+.
T Consensus 169 ~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~------ 241 (398)
T 2rfv_A 169 ETVAGIAHQQGALLVVDNTFMSPYCQQPL-QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI------ 241 (398)
T ss_dssp HHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHT------
T ss_pred HHHHHHHHHcCCEEEEECCCcccccCCch-hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhC------
Confidence 99999999999999999999977653222 3578999999999765 444 499999876554 343333221
Q ss_pred ccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE--------------EeCCCCCcccceEEEE
Q 040741 292 RSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV--------------VNGSMERRYIGNLNLS 357 (457)
Q Consensus 292 ~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~ 357 (457)
+.++.++..+.++..+++. +....++..++.+++.+.|++ .+.+. +..+.....++++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~ 316 (398)
T 2rfv_A 242 TGGCMSPFNAWLTLRGVKT----LGIRMERHCENALKIARFLEG-HPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFE 316 (398)
T ss_dssp TCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE
T ss_pred CCCCCCHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence 1236666666666556543 344455566677777777776 44322 2111111246677777
Q ss_pred Eccc--cchHHHhcc--cCeEecccCc------cCCCCCC--hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741 358 FAYV--EGESLLMGL--KEVAVSSGSA------CTSASLE--PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL 425 (457)
Q Consensus 358 ~~~~--~~~~~~~~l--~~i~~~~g~~------~~~~~~~--~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~ 425 (457)
+++. +...++..+ .++.++.|.. |.+.... ++.++...|+.+ +.|||+++..+++++|++++++
T Consensus 317 ~~~~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~----~~iRls~~~~~~~~~i~~l~~a 392 (398)
T 2rfv_A 317 IAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD----GLIRLSVGLEDPEDIINDLEHA 392 (398)
T ss_dssp ETTHHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCC----CeEEEEecCCCHHHHHHHHHHH
Confidence 7642 234555555 4777777755 3221111 345566666643 8999999999999999999888
Q ss_pred HHHH
Q 040741 426 TVKQ 429 (457)
Q Consensus 426 l~~~ 429 (457)
|+++
T Consensus 393 l~~~ 396 (398)
T 2rfv_A 393 IRKA 396 (398)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8753
No 82
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.97 E-value=1.5e-30 Score=261.26 Aligned_cols=339 Identities=17% Similarity=0.202 Sum_probs=245.8
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhh--hHHHHHHHHHHHHHHHhC--CCCC-cEEEeCChHH
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGW--ESEVAVETARSQIADLIG--ASPK-EIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~la~~~g--~~~~-~i~~t~g~T~ 129 (457)
.++|+|+.+.+. +.++++.+++.+.+.... + ..+.|+. ...+..+.+.+.+.+.+| ++++ ++++|+|+|+
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~--~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~ 112 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALAAAANSPD--P--LANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYE 112 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHHHHHTCSC--G--GGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhccc--c--CccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHH
Confidence 467899888776 678999999999886410 0 0111111 112333334444444457 4677 8999999999
Q ss_pred HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC----------CCCCCHHHHHHhcCCCceE
Q 040741 130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA----------DGIVNLDELRAAIRPDTGL 199 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~----------~~~~d~~~le~~i~~~t~l 199 (457)
|+.++++++. ++|++|++..+.|.++...++.. |.+++.++.+. ++.+|+++|++++++++++
T Consensus 113 a~~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 185 (429)
T 1yiz_A 113 ALYATIQGHV----DEGDEVIIIEPFFDCYEPMVKAA---GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKM 185 (429)
T ss_dssp HHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEE
T ss_pred HHHHHHHHhc----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceE
Confidence 9999999987 88999999999999988876655 99999999875 3568999999999989999
Q ss_pred EEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC------Ccc-cCC-CCcccEEEeccccccCCCC--ce
Q 040741 200 ISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK------IPV-DVE-KWNVSLMSLSGHKIYGPKG--VG 266 (457)
Q Consensus 200 i~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~------~~~-~~~-~~~~Di~~~s~~K~~g~~G--~G 266 (457)
|++++++||+|.+.| +++|.++|++||+++|+|++|+... .++ .+. ..+.|+++.|++|.+|++| +|
T Consensus 186 v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G 265 (429)
T 1yiz_A 186 IIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIG 265 (429)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCE
T ss_pred EEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceE
Confidence 999999999999986 8899999999999999999998422 122 122 3468999999999888777 89
Q ss_pred EEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH-----H--HHhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 040741 267 ALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-----A--KKEMDYDHKRITALHDRLLNGIKEKLDG 339 (457)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-----~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 339 (457)
+++++++.++.+...... ...+.+.....++.++++. . .+.+++..++++++++++.+.|.+ + +
T Consensus 266 ~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g 336 (429)
T 1yiz_A 266 WAYGPEALLKNLQMVHQN-------CVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAE-V-G 336 (429)
T ss_dssp EEESCHHHHHHHHHHHHT-------TTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHH-H-T
T ss_pred EEEeCHHHHHHHHHHHhh-------cccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHh-C-C
Confidence 999987665555433221 1235666667677777766 3 334788888999999999999998 4 6
Q ss_pred eEEeCCCCCcccceEEEEEccc-------------cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCC
Q 040741 340 VVVNGSMERRYIGNLNLSFAYV-------------EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAH 403 (457)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~ 403 (457)
+.+..+.. +.++.+.++.. +..++...| +||.+.+|..|..... .....
T Consensus 337 ~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~------------~~~~~ 401 (429)
T 1yiz_A 337 MNPTVPQG---GYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPN------------KHLGE 401 (429)
T ss_dssp CEEEECSB---SSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGG------------GGGTT
T ss_pred CcccCCCc---ceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcc------------cCCCC
Confidence 76654321 34555566532 334565544 5999998865532100 00124
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741 404 TSIRFGIGRFTTEAEVDRAIELTVKQVE 431 (457)
Q Consensus 404 ~~iRi~~~~~~t~edid~~~~~l~~~~~ 431 (457)
++|||+++. ++++|++++++|+++++
T Consensus 402 ~~iRis~~~--~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 402 DFVRYCFFK--KDENLQKAAEILRKWKG 427 (429)
T ss_dssp TEEEEECCS--CHHHHHHHHHHHHHHSC
T ss_pred CeEEEEecC--CHHHHHHHHHHHHHhcc
Confidence 799999984 89999999999988753
No 83
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.97 E-value=2e-30 Score=257.64 Aligned_cols=337 Identities=10% Similarity=0.051 Sum_probs=243.6
Q ss_pred CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHH
Q 040741 57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATESNNV 133 (457)
Q Consensus 57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a~~~ 133 (457)
+.++|+.+.+. ++++++.+++.+.+.... ..|+....+..+.+.+.+.+.+| ++++++++|+|+|+|+.+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~ 104 (399)
T 1c7n_A 32 EVVPLSVADMEFKNPPELIEGLKKYLDETV-------LGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFN 104 (399)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHCC-------CSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHH
T ss_pred CceeeeecCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHH
Confidence 56777776654 568999999999886421 11111112333334444444457 567789999999999999
Q ss_pred HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCC--CCCHHHHHHhcC-CCceEEEEecccccc
Q 040741 134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADG--IVNLDELRAAIR-PDTGLISVMAVNNEI 209 (457)
Q Consensus 134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~--~~d~~~le~~i~-~~t~li~i~~~~~~~ 209 (457)
+++++. ++|++|++..+.|.++...++.. |.+++.++.+ .+| .+|+++++++++ +++++|++++++||+
T Consensus 105 ~~~~l~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~npt 177 (399)
T 1c7n_A 105 AVREFT----KPGDGVIIITPVYYPFFMAIKNQ---ERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPV 177 (399)
T ss_dssp HHHHHC----CTTCEEEECSSCCTHHHHHHHTT---TCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTT
T ss_pred HHHHhc----CCCCEEEEcCCCcHhHHHHHHHc---CCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCC
Confidence 999987 88999999999999988776654 9999998875 333 489999999998 789999999999999
Q ss_pred ccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccCCC-----CcccEEEeccccccCCCC--ceEEEEec-CC
Q 040741 210 GVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDVEK-----WNVSLMSLSGHKIYGPKG--VGALYMRR-RP 274 (457)
Q Consensus 210 G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~~-----~~~Di~~~s~~K~~g~~G--~G~l~~~~-~~ 274 (457)
|.+.| +++|+++|++||+++|+|++|+.... ..++.. .+.++++.|++|.+|++| +|++++++ +.
T Consensus 178 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 257 (399)
T 1c7n_A 178 GRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDI 257 (399)
T ss_dssp TBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHH
T ss_pred CcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHH
Confidence 99999 99999999999999999999986322 222222 245688999999887555 79999874 35
Q ss_pred CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741 275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL 354 (457)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 354 (457)
.+++......+ ..++++.....++.++++...+.+++..++++++++++.+.|++.+|++.+..+. .+.++
T Consensus 258 ~~~l~~~~~~~------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~~~~~ 328 (399)
T 1c7n_A 258 RERFTKSRDAT------SGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIE---GTYLQ 328 (399)
T ss_dssp HHHHHHHHHHT------TCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCS---BSSEE
T ss_pred HHHHHHHHhhc------ccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCC---ceEEE
Confidence 55554433221 1235677777777667765444578888899999999999998645677655432 12233
Q ss_pred EEEEcc--ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741 355 NLSFAY--VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ 429 (457)
Q Consensus 355 ~~~~~~--~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~ 429 (457)
.+.++. .+..++...| +||.+.+|..|.+ ...+++||+++.. ++++++++++|+++
T Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-----------------~~~~~iRis~~~~--~~~l~~~l~~l~~~ 389 (399)
T 1c7n_A 329 WIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGD-----------------GGIGFERINLAAP--SSVIQESLERLNKA 389 (399)
T ss_dssp EEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCG-----------------GGTTEEEEECCSC--HHHHHHHHHHHHHH
T ss_pred EEEcccCCCCHHHHHHHHHHhCCEEEeCccccCC-----------------CCCCeEEEEeccC--HHHHHHHHHHHHHH
Confidence 456653 3556666665 4899988876542 1237999999863 79999999999999
Q ss_pred HHHHHh
Q 040741 430 VEKLRE 435 (457)
Q Consensus 430 ~~~~~~ 435 (457)
++++++
T Consensus 390 l~~~~~ 395 (399)
T 1c7n_A 390 LKDLKN 395 (399)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 988754
No 84
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=6.4e-31 Score=263.65 Aligned_cols=342 Identities=13% Similarity=0.107 Sum_probs=246.0
Q ss_pred CCcEEecCCCCC---CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C---CCCCcEEEeC
Q 040741 56 GRPLYLDMQATT---PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G---ASPKEIIFTS 125 (457)
Q Consensus 56 ~~~i~l~~~~~~---~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g---~~~~~i~~t~ 125 (457)
.+.|.|..+.+. ..++++.+++.+.+...... ..+|.......++++.+++++ | ++++++++|+
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~------~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~ 116 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHY------TLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTV 116 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHH------HTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEE
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchh------hcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEec
Confidence 455666554433 25688999998887642100 001111123456667777776 8 6677899999
Q ss_pred ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC--------Cc
Q 040741 126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP--------DT 197 (457)
Q Consensus 126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~--------~t 197 (457)
|+|+|+.++++++. ++|++|++..+.|.++...++.. |.+++.++.+.++ +|++++++++++ ++
T Consensus 117 G~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~ 188 (425)
T 1vp4_A 117 GSQQALDLIGKLFL----DDESYCVLDDPAYLGAINAFRQY---LANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQV 188 (425)
T ss_dssp HHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHTT---TCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGE
T ss_pred cHHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHHHHHc---CCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCc
Confidence 99999999999987 89999999999999988776654 9999999987665 899999999876 78
Q ss_pred eEE-EEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccC---CCCcccEEEeccccccCCCC--
Q 040741 198 GLI-SVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDV---EKWNVSLMSLSGHKIYGPKG-- 264 (457)
Q Consensus 198 ~li-~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~---~~~~~Di~~~s~~K~~g~~G-- 264 (457)
++| ++++++||+|.+.| +++|.++|++||+++|+|++|+.+.. ...+ ...+.++++.|++|.+| +|
T Consensus 189 ~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r 267 (425)
T 1vp4_A 189 KFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLR 267 (425)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGC
T ss_pred eEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccc
Confidence 887 57999999999987 56899999999999999999986432 1122 12246788999999888 56
Q ss_pred ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhhcCC---C
Q 040741 265 VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA--KKEMDYDHKRITALHDRLLNGIKEKLD---G 339 (457)
Q Consensus 265 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~---~ 339 (457)
+|+++++++..+++...... ...+.+.....++..+++.. .+.+++..++++++++++.+.|++.++ +
T Consensus 268 ~G~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g 340 (425)
T 1vp4_A 268 IGMVAGSKEFIRKIVQAKQS-------ADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPG 340 (425)
T ss_dssp EEEEECCHHHHHHHHHHHHH-------HHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTT
T ss_pred eEEEeeCHHHHHHHHHHhhh-------hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 79999987665555433221 11244666666666677653 345788888899999999999987335 5
Q ss_pred eEEeCCCCCcccceEEEEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCH
Q 040741 340 VVVNGSMERRYIGNLNLSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416 (457)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ 416 (457)
+.+..+.. +.++.+.++ +.+..++...| +||.+.+|..|.+. ....++|||+++.. ++
T Consensus 341 ~~~~~~~~---g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~~-~~ 401 (425)
T 1vp4_A 341 VKWVKSEG---GLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVY---------------DEPSPSMRLSFCLP-PD 401 (425)
T ss_dssp CEECCCSB---SSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTT---------------CCCCSEEEEECSSS-CH
T ss_pred eEEecCCc---cEEEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcCC---------------CCCCCeEEEEeCCC-CH
Confidence 77754321 345556665 23455566655 69999988766431 11237999999874 79
Q ss_pred HHHHHHHHHHHHHHHHHHhcCh
Q 040741 417 AEVDRAIELTVKQVEKLREMSP 438 (457)
Q Consensus 417 edid~~~~~l~~~~~~~~~~~~ 438 (457)
+++++++++|+++++++.+..|
T Consensus 402 e~i~~~l~~l~~~l~~~~~~~~ 423 (425)
T 1vp4_A 402 EKIVEGIKRLREVVLEYGKEKH 423 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999988765443
No 85
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.97 E-value=1.7e-30 Score=258.31 Aligned_cols=337 Identities=14% Similarity=0.103 Sum_probs=227.7
Q ss_pred EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh
Q 040741 60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVM 139 (457)
Q Consensus 60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~ 139 (457)
-.++.++++..+++.+++.. ++++.+ .+.+++...+...++++.+++++|.+ +.+++++||+|++++++++.
T Consensus 30 ~p~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~r~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~ 101 (398)
T 1gc0_A 30 PPVYQTATFTFPTVEYGAAC-----FAGEQA-GHFYSRISNPTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLL 101 (398)
T ss_dssp CCBCCCSCBCCC---------------------------CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC
T ss_pred CCccCCCccccCCHHHHHHh-----hcCCcC-CCcccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh
Confidence 45666777777777776652 233322 34445445578999999999999986 47777788999999999987
Q ss_pred hhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHH
Q 040741 140 HFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEI 218 (457)
Q Consensus 140 ~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i 218 (457)
++|++|+++.+.|.++...++.+ ...|+++++++.+ |++++++++++++++|++++++||+|.+.|+++|
T Consensus 102 ----~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i 172 (398)
T 1gc0_A 102 ----RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGV 172 (398)
T ss_dssp ----CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred ----cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCcccccHHHH
Confidence 79999999999999998877543 5669999999865 8999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-CCC--ceEEEEecCCCc-cccccccCCccccccccC
Q 040741 219 GQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKG--VGALYMRRRPRI-RVEPLINGGGQERGIRSG 294 (457)
Q Consensus 219 ~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g-~~G--~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 294 (457)
.++|++||+++|+|++|+.+...... ..++|+++.|+||++| +.+ +|+++++++.+. .+.+...+ +..+
T Consensus 173 ~~l~~~~~~~li~D~~~~~~~~~~~~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~------~~~~ 245 (398)
T 1gc0_A 173 AKIARKHGATVVVDNTYCTPYLQRPL-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKD------MTGA 245 (398)
T ss_dssp HHHHGGGTCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHH------HTCC
T ss_pred HHHHHHcCCEEEEECCCcccccCCch-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhc------cCCC
Confidence 99999999999999999876543322 3578999999999766 443 599998875443 33332221 0224
Q ss_pred CCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE--------------EeCCCCCcccceEEEEEcc
Q 040741 295 TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV--------------VNGSMERRYIGNLNLSFAY 360 (457)
Q Consensus 295 t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 360 (457)
+.++..++++..+++ .+....++..++.+++.+.|.+ ++.+. +.++.....++++.+.+++
T Consensus 246 ~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~-~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (398)
T 1gc0_A 246 VLSPHDAALLMRGIK----TLNLRMDRHCANAQVLAEFLAR-QPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG 320 (398)
T ss_dssp CCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHT-CTTEEEEEEC----------------CCTTEEEEEETT
T ss_pred CCCHHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHhc-CCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC
Confidence 566665555544443 3455566677777777777776 55432 2222112357777777764
Q ss_pred cc--chHHHhccc--CeEecccCc------cCC--CCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741 361 VE--GESLLMGLK--EVAVSSGSA------CTS--ASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK 428 (457)
Q Consensus 361 ~~--~~~~~~~l~--~i~~~~g~~------~~~--~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~ 428 (457)
.. ...++..+. .+.+..|+. |++ ....++.++...|+++ +.|||+++..+++++|+.+.++|++
T Consensus 321 ~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~----~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 321 GIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISE----GLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp HHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCC----CeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 21 223333331 222333543 332 2234677788888764 8999999999999999999988876
Q ss_pred H
Q 040741 429 Q 429 (457)
Q Consensus 429 ~ 429 (457)
+
T Consensus 397 ~ 397 (398)
T 1gc0_A 397 S 397 (398)
T ss_dssp H
T ss_pred c
Confidence 4
No 86
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.97 E-value=2.2e-30 Score=261.35 Aligned_cols=338 Identities=12% Similarity=0.123 Sum_probs=245.2
Q ss_pred CCcEEecCCCCCC---CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CC-CCCcEEEeCCh
Q 040741 56 GRPLYLDMQATTP---VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GA-SPKEIIFTSGA 127 (457)
Q Consensus 56 ~~~i~l~~~~~~~---~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~-~~~~i~~t~g~ 127 (457)
.+.|.|..+.+.+ +++++.+++.+.+.... ....+|.......++++.+++++ |. +++++++|+|+
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~ 149 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYA------DKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGS 149 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSH------HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSH
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhh------HHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcH
Confidence 4567776555442 56788888888876421 00011111123456777777777 98 67789999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC----C--CceEE-
Q 040741 128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR----P--DTGLI- 200 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~----~--~t~li- 200 (457)
|+|+.++++++. ++||+|++..+.|.++...++.. |.+++.++.+.++ +|+++|+++++ + ++++|
T Consensus 150 ~~al~~~~~~l~----~~Gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~ 221 (448)
T 3aow_A 150 QQALDLIGRVFL----NPGDIVVVEAPTYLAALQAFNFY---EPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVY 221 (448)
T ss_dssp HHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHTT---CCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHc----CCCCEEEEeCCChHHHHHHHHHc---CCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEE
Confidence 999999999997 89999999999999988776654 9999999987665 89999999997 6 78887
Q ss_pred EEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cc---cCCCCcccEEEeccccccCCCC--ceEE
Q 040741 201 SVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PV---DVEKWNVSLMSLSGHKIYGPKG--VGAL 268 (457)
Q Consensus 201 ~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~---~~~~~~~Di~~~s~~K~~g~~G--~G~l 268 (457)
++++++||+|.+.| +++|.++|++||++||+|++|+.+.. .. .+...+.++++.|++|.+| +| +|++
T Consensus 222 ~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v 300 (448)
T 3aow_A 222 TVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWM 300 (448)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEE
T ss_pred ECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEE
Confidence 57899999999988 56899999999999999999986432 11 2222346789999999888 55 8999
Q ss_pred EEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhhcCC-CeEEeCC
Q 040741 269 YMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA--KKEMDYDHKRITALHDRLLNGIKEKLD-GVVVNGS 345 (457)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~ 345 (457)
+++++.++++....... . .+.+.....++..+++.. .+.+++..++++++++++.+.|++.+| ++.+..+
T Consensus 301 ~~~~~l~~~l~~~~~~~------~-~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p 373 (448)
T 3aow_A 301 VGDPGIIRKMEIAKQST------D-LCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKP 373 (448)
T ss_dssp EECHHHHHHHHHHHHHH------H-SSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCC
T ss_pred EeCHHHHHHHHHHHHHh------c-CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCC
Confidence 99877666554432211 1 234555566665666542 345778888888999999999987456 5776543
Q ss_pred CCCcccceEEEEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHH
Q 040741 346 MERRYIGNLNLSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRA 422 (457)
Q Consensus 346 ~~~~~~~~~~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~ 422 (457)
.. +.++.+.++ +.+..++...+ +||.+.+|..|.+. ....+++||+++.. ++++|+++
T Consensus 374 ~~---g~~~~v~~~~~~~~~~l~~~l~~~gV~v~pg~~f~~~---------------~~~~~~iRls~~~~-~~e~i~~~ 434 (448)
T 3aow_A 374 EG---GMFIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAH---------------RDVKNTMRLNFTYV-DEDKIMEG 434 (448)
T ss_dssp SB---SSEEEEECSTTCCHHHHHHHHHHTTEECEEGGGGSTT---------------CCCCSEEEEECSSS-CTHHHHHH
T ss_pred Cc---cEEEEEEcCCCCCHHHHHHHHHHCCcEEEcchhhcCC---------------CCCCCEEEEEeCCC-CHHHHHHH
Confidence 21 344555654 24556676666 69999998766431 11237999999874 78999999
Q ss_pred HHHHHHHHHHHH
Q 040741 423 IELTVKQVEKLR 434 (457)
Q Consensus 423 ~~~l~~~~~~~~ 434 (457)
+++|++++++..
T Consensus 435 ~~~L~~~l~~~~ 446 (448)
T 3aow_A 435 IKRLAETIKEEL 446 (448)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997653
No 87
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.97 E-value=3.5e-30 Score=255.84 Aligned_cols=333 Identities=12% Similarity=0.110 Sum_probs=236.6
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhc-----cCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCCh
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSR-----YGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGA 127 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-----~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~ 127 (457)
.+.+.|..+.+. ++++++.+++.+.+... .+++. .....+..+.+.+.+.+.+| ++++++++|+|+
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~------~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~ 108 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTS------AQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGA 108 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCC------TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCC------CCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCH
Confidence 355777776555 57899999999988651 11111 01112444555555555556 567789999999
Q ss_pred HHHHHHHHHHhhhhhcCCC-CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEecc
Q 040741 128 TESNNVSIKGVMHFYKDKK-RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAV 205 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~~g-~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~ 205 (457)
|+|++++++++. ++| ++|++..+.|.++...++.. |.+++.++.+. ++.+|++++++++++++++|+++++
T Consensus 109 ~~al~~~~~~l~----~~g~d~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p 181 (398)
T 3ele_A 109 AASLSICFRALT----SDAYDEFITIAPYFPEYKVFVNAA---GARLVEVPADTEHFQIDFDALEERINAHTRGVIINSP 181 (398)
T ss_dssp HHHHHHHHHHHC----CSTTCEEEEESSCCTHHHHHHHHT---TCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSS
T ss_pred HHHHHHHHHHHc----CCCCCEEEEeCCCchhhHHHHHHc---CCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCC
Confidence 999999999997 899 99999999999988877665 99999999874 4589999999999999999999999
Q ss_pred ccccccccC---hHHHHHHHHh------cCCcEEEehhhhcCC-----CcccCCCCcccEEEeccccccCCCC--ceEEE
Q 040741 206 NNEIGVIQP---MEEIGQICKE------FKIPFHTDAAQALGK-----IPVDVEKWNVSLMSLSGHKIYGPKG--VGALY 269 (457)
Q Consensus 206 ~~~~G~~~~---l~~i~~l~~~------~~v~li~D~a~~~g~-----~~~~~~~~~~Di~~~s~~K~~g~~G--~G~l~ 269 (457)
+||+|.+.| +++|+++|++ ||+++|+|++|+... .+......+.++++.|++|.+|.+| +|+++
T Consensus 182 ~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 261 (398)
T 3ele_A 182 NNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVL 261 (398)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEE
Confidence 999999999 6677789999 999999999998532 2222233456799999999887554 89999
Q ss_pred EecCCCcc--ccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC
Q 040741 270 MRRRPRIR--VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME 347 (457)
Q Consensus 270 ~~~~~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 347 (457)
++++.... +....... .......+++.....++..+++ . ....++++++++++.+.|++ + ++.+..+..
T Consensus 262 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~---~--~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~ 332 (398)
T 3ele_A 262 VPDEVYDKAELYAAVCGA--GRALGYVCAPSLFQKMIVKCQG---A--TGDINAYKENRDLLYEGLTR-I-GYHCFKPDG 332 (398)
T ss_dssp CCTTSTTHHHHHHHHHHH--HHHTTCCCSCHHHHHHHTTCTT---C--CCCHHHHHHHHHHHHHHHHH-H-TCCEECCSB
T ss_pred EcchhhhHHHHHHHHHHH--hhhccccCCCHHHHHHHHHHhc---C--HHHHHHHHHHHHHHHHHHHH-c-CCeecCCCe
Confidence 98875542 11111000 0000112333333333322221 1 12457788889999999988 4 666654322
Q ss_pred CcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741 348 RRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL 425 (457)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~ 425 (457)
+..+.+.++..+..++...+ +||.+.+|..|.. .+++||+++ +++++|++++++
T Consensus 333 ---~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~e~i~~~l~~ 388 (398)
T 3ele_A 333 ---AFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGC-------------------PGWVRISYC--VDREMIKHSMPA 388 (398)
T ss_dssp ---SSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTC-------------------TTEEEEECC--SCHHHHHHHHHH
T ss_pred ---eEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCC-------------------CCeEEEEec--CCHHHHHHHHHH
Confidence 33355566544566666666 6999999876642 279999997 689999999999
Q ss_pred HHHHHHHHH
Q 040741 426 TVKQVEKLR 434 (457)
Q Consensus 426 l~~~~~~~~ 434 (457)
|++++++++
T Consensus 389 l~~~l~~~~ 397 (398)
T 3ele_A 389 FEKIYKKYN 397 (398)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998764
No 88
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.97 E-value=1.1e-30 Score=257.52 Aligned_cols=328 Identities=13% Similarity=0.090 Sum_probs=241.3
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CCC--CC-cEEEeCCh
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GAS--PK-EIIFTSGA 127 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~~--~~-~i~~t~g~ 127 (457)
.+++.|..+.+. +.++++.+++.+.+.... .+.|+ ......++++.+++++ |.+ ++ ++++|+|+
T Consensus 25 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~--~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~ 96 (376)
T 2dou_A 25 VGLIDLSIGSTDLPPPEAPLKALAEALNDPT------TYGYC--LKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGS 96 (376)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHTTCGG------GSSCC--CHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSH
T ss_pred CCEEeccCCCCCCCCCHHHHHHHHHHHhCCC------cCCCC--CCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCc
Confidence 456777766555 467999999998875310 11112 1235667788888877 874 45 89999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccc
Q 040741 128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNN 207 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~ 207 (457)
|+|++++++++. ++|++|++..+.|.++...++.. |.+++.++.+.+..+|++++++++++++++|++++++|
T Consensus 97 ~~a~~~~~~~l~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~n 169 (376)
T 2dou_A 97 QEGLAHLLLALT----EPEDLLLLPEVAYPSYFGAARVA---SLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNN 169 (376)
T ss_dssp HHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHHHT---TCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCT
T ss_pred HHHHHHHHHHhc----CCCCEEEECCCCcHhHHHHHHHc---CCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCC
Confidence 999999999987 88999999999999988777655 99999999844445899999999887889999999999
Q ss_pred ccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---c---ccC-CCCcccEEEeccccccCCCC--ceEEEEecCCC
Q 040741 208 EIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---P---VDV-EKWNVSLMSLSGHKIYGPKG--VGALYMRRRPR 275 (457)
Q Consensus 208 ~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~---~~~-~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~ 275 (457)
|+|.+.| +++|.++|++||+++|+|++|+.+.. + ... ...+.++++.|++|.+|.+| +|+++++++..
T Consensus 170 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 249 (376)
T 2dou_A 170 PTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEAL 249 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHH
T ss_pred CcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHH
Confidence 9999988 67889999999999999999986432 1 122 12356788999999887555 79999887665
Q ss_pred ccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEE
Q 040741 276 IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN 355 (457)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 355 (457)
+++...... ...+.+.....++.++++...+.+++..++++++++++.+.|++ + +.+..+. .+.++.
T Consensus 250 ~~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~--~~~~~~~---~~~~~~ 316 (376)
T 2dou_A 250 ARLERVKGV-------IDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKG-V--LSLLPPR---ATMYLW 316 (376)
T ss_dssp HHHHHHHHH-------HCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTT-T--SEECCCC---BSSEEE
T ss_pred HHHHHHHHh-------cccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-h--cCccCCC---eeEEEE
Confidence 555443221 11245666666666666543445788888999999999999988 5 5554322 133445
Q ss_pred EEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741 356 LSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 356 ~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~ 430 (457)
+.++ ..+..++...| +||.+.+|..|.. ...+++||+++. +++++++++++|++++
T Consensus 317 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~-----------------~~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 317 GRLPEGVDDLEFGLRLVERGVALAPGRGFGP-----------------GGKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp EECCTTCCHHHHHHHHHHTTEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHHCCEEEcCchhhCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 5654 23445666666 6999998876532 123799999985 7899999999998764
No 89
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.97 E-value=5.6e-30 Score=251.41 Aligned_cols=322 Identities=16% Similarity=0.101 Sum_probs=239.2
Q ss_pred CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741 57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI 135 (457)
Q Consensus 57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al 135 (457)
++++|..+.+. ..++++.+++.+.+.....++. ....++++.+++++|++++++++|+|+|+++++++
T Consensus 25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-----------~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~ 93 (364)
T 1lc5_A 25 QLLDFSANINPLGMPVSVKRALIDNLDCIERYPD-----------ADYFHLHQALARHHQVPASWILAGNGETESIFTVA 93 (364)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCC-----------TTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHH
T ss_pred ceEEeccccCCCCCCHHHHHHHHHHHHHhhcCCC-----------CCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHH
Confidence 46777766544 4789999999998754322211 13578999999999998889999999999999999
Q ss_pred HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCC-HHHHHHhcCCCceEEEEeccccccccccC
Q 040741 136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVN-LDELRAAIRPDTGLISVMAVNNEIGVIQP 214 (457)
Q Consensus 136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d-~~~le~~i~~~t~li~i~~~~~~~G~~~~ 214 (457)
+++ ++++|++..+.|.++...++.. |.+++.++.+.+..++ ++++.+.+++++++|++++++||+|.+.|
T Consensus 94 ~~~------~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~ 164 (364)
T 1lc5_A 94 SGL------KPRRAMIVTPGFAEYGRALAQS---GCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPE 164 (364)
T ss_dssp HHH------CCSEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCC
T ss_pred HHc------CCCeEEEeCCCcHHHHHHHHHc---CCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCCCCC
Confidence 877 3589999999999988877655 9999999987422234 47677778788899999999999999999
Q ss_pred ---hHHHHHHHHhcCCcEEEehhhhcCCC----cccC-CCCcccEEEeccccccCCCC--ceEEE-EecCCCcccccccc
Q 040741 215 ---MEEIGQICKEFKIPFHTDAAQALGKI----PVDV-EKWNVSLMSLSGHKIYGPKG--VGALY-MRRRPRIRVEPLIN 283 (457)
Q Consensus 215 ---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~-~~~~~Di~~~s~~K~~g~~G--~G~l~-~~~~~~~~~~~~~~ 283 (457)
+++|.++|++||+++|+|++|+.+.. .++. ...+.|+++.|+||.+|.+| +|+++ ++++..+++.....
T Consensus 165 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~ 244 (364)
T 1lc5_A 165 RPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM 244 (364)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCC
Confidence 89999999999999999999985432 1222 33467899999999888555 79999 87766555544321
Q ss_pred CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc
Q 040741 284 GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG 363 (457)
Q Consensus 284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (457)
..+.+...+.++..+++. .+.+++..++++++++++.+.|++ +|++.+..+ . ..++.+.++. +.
T Consensus 245 ---------~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~-~---g~~~~~~~~~-~~ 308 (364)
T 1lc5_A 245 ---------PWSVNALAALAGEVALQD-SAWQQATWHWLREEGARFYQALCQ-LPLLTVYPG-R---ANYLLLRCER-ED 308 (364)
T ss_dssp ---------TTCSCHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHHT-STTEEECCC-S---SSEEEEEESC-TT
T ss_pred ---------CCCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHhc-CCCCEECCC-C---CeEEEEECCC-cH
Confidence 125666666666666654 335788888899999999999998 788887642 2 3445555543 23
Q ss_pred hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 364 ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 364 ~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
.++...| +||.+.+|..|.. ...+++||+++ +.+|+++++++|++.+++++
T Consensus 309 ~~l~~~l~~~gi~v~~g~~~~~-----------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 309 IDLQRRLLTQRILIRSCANYPG-----------------LDSRYYRVAIR---SAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp CCHHHHHHTTTEECEECTTSTT-----------------CCTTEEEEECC---CHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHCCcEEeeCcccCC-----------------CCCCEEEEEeC---CHHHHHHHHHHHHHHhhccc
Confidence 3555555 6999998876532 12379999986 58999999999999887664
No 90
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.97 E-value=2.1e-30 Score=259.66 Aligned_cols=309 Identities=14% Similarity=0.123 Sum_probs=235.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcC
Q 040741 92 THLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEG 170 (457)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G 170 (457)
.|.|++...+...++++++++++|.+ +.+++++|++|++++++++. ++|++|+++.+.|.++...+. .++..|
T Consensus 105 ~~~y~r~~~~~~~~l~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G 178 (445)
T 1qgn_A 105 SFEYGRYGNPTTVVLEEKISALEGAE--STLLMASGMCASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETILPKMG 178 (445)
T ss_dssp CCCBGGGCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS----CSSCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred CccccCCCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHHHHHcC
Confidence 34555555678999999999999986 35566667799999999887 789999999999998877655 345669
Q ss_pred cEEEEEeCCCCCCCCHHHHHHhcCCCc-eEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcc
Q 040741 171 FEITYLPVGADGIVNLDELRAAIRPDT-GLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNV 249 (457)
Q Consensus 171 ~~v~~v~~~~~~~~d~~~le~~i~~~t-~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~ 249 (457)
+++++++.+ |+++++++|+++| ++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+... .....++
T Consensus 179 ~~v~~v~~~-----d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-~~~~~g~ 252 (445)
T 1qgn_A 179 ITATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-KALALGA 252 (445)
T ss_dssp CEEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CTTTTTC
T ss_pred CEEEEeCCC-----CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-CccccCC
Confidence 999999875 8999999999999 99999999999999999999999999999999999999876543 2335689
Q ss_pred cEEEeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741 250 SLMSLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH 326 (457)
Q Consensus 250 Di~~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~ 326 (457)
|+++.|+||++|+.| +|+++++++.++++...... ..+++++...+.+..++ +.+..+.++..+++
T Consensus 253 Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~-------~g~~~~~~~a~~~~~~l----~~l~~r~~~~~~~a 321 (445)
T 1qgn_A 253 DLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI-------LGGALNPNAAYLIIRGM----KTLHLRVQQQNSTA 321 (445)
T ss_dssp SEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHG----GGHHHHHHHHHHHH
T ss_pred EEEEECCcccccccccceEEEEEECHHHHHHHHHHHHH-------hCCCCCHHHHHHHHHhH----HHHHHHHHHHHHHH
Confidence 999999999888776 89999987665555432211 11234444433332333 23455566777788
Q ss_pred HHHHHHHhhcCCCe-EEeCCC--C-----------CcccceEEEEEccc--cchHHHhccc--CeEecccCccCCCCC--
Q 040741 327 DRLLNGIKEKLDGV-VVNGSM--E-----------RRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGSACTSASL-- 386 (457)
Q Consensus 327 ~~l~~~l~~~~~~~-~~~~~~--~-----------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~~~~-- 386 (457)
+++.+.|++ .|++ .+..+. . ...++++.|.+++. +...++..++ +++++.|..|+....
T Consensus 322 ~~l~~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~ 400 (445)
T 1qgn_A 322 LRMAEILEA-HPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPA 400 (445)
T ss_dssp HHHHHHHHT-CTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHH
T ss_pred HHHHHHHhc-CCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCceeeeccc
Confidence 899999998 7887 555431 1 12577888888753 2456677774 899999999875321
Q ss_pred ------ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 387 ------EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 387 ------~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
.++.++.++|+.+ +.|||+++. ||+|.+++.|+++++.
T Consensus 401 ~~~h~~~~~~~~~~~g~~~----~~iRlSvG~----Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 401 IMSYWDLSQSDRAKYGIMD----NLVRFSFGV----EDFDDLKADILQALDS 444 (445)
T ss_dssp HHHSTTSCHHHHHTTTCCS----SEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHhh
Confidence 2456778888765 899999993 7899999999998864
No 91
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.97 E-value=1.4e-30 Score=258.78 Aligned_cols=334 Identities=15% Similarity=0.115 Sum_probs=242.0
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChHHHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIF-TSGATESNNVS 134 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~-t~g~T~a~~~a 134 (457)
+.+|+.+.++.++++++++++.++.....+. .+. +....+..+++++++++++|+++ ++++| |+|||+|++++
T Consensus 39 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~ 113 (398)
T 2fyf_A 39 PRDGRFGSGPSKVRLEQLQTLTTTAAALFGT----SHR-QAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAA 113 (398)
T ss_dssp CSSCBCCSSSCCCCHHHHHGGGTTTTTTTTS----CTT-SHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHH
T ss_pred cCCccccCCCCCCCHHHHHHHhhcCCCccCc----CcC-CHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHH
Confidence 3467777888899999999987742111110 121 23344678899999999999973 57998 99999999999
Q ss_pred HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhc--CcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741 135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQE--GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI 212 (457)
Q Consensus 135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~--G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~ 212 (457)
++++. ++| .+++...+|..... ..+... |.+++.++.+.+...+. .+++++++|++++++|++|.+
T Consensus 114 ~~~l~----~~g-v~~v~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~g~~~~~-----~i~~~~~~v~~~~~~nptG~~ 181 (398)
T 2fyf_A 114 AFGLI----DKR-SLHLTYGEFSAKFA--SAVSKNPFVGEPIIITSDPGSAPEP-----QTDPSVDVIAWAHNETSTGVA 181 (398)
T ss_dssp HHHTC----SSC-EEEEECSHHHHHHH--HHHHHCTTSCCCEEEECCTTCCCCC-----CCCTTCSEEEEESEETTTTEE
T ss_pred HHHhc----CCC-eEEEeCCHHHHHHH--HHHHHhCCCCceEEEecCCCCCCCc-----cccCCCCEEEEeCcCCCccee
Confidence 99987 666 33334444432221 123333 78888998873322332 267889999999999999999
Q ss_pred cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCC-CceEEEEecCCCccccc----------c
Q 040741 213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPK-GVGALYMRRRPRIRVEP----------L 281 (457)
Q Consensus 213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~-G~G~l~~~~~~~~~~~~----------~ 281 (457)
.|+++|.++ +|+++|+|++|+.+..++++. ++|++++|+||++|++ |+|+++++++.++++.. .
T Consensus 182 ~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~ 256 (398)
T 2fyf_A 182 VAVRRPEGS---DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDF 256 (398)
T ss_dssp CCCCCCTTC---C-CEEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGG
T ss_pred cchHHhhhh---cCCeEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcE
Confidence 999998877 899999999999998876654 4899999999988866 69999999876655522 1
Q ss_pred ccCCccc----cccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhhcCCCeEEeC-CCCCcccceE
Q 040741 282 INGGGQE----RGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIKEKLDGVVVNG-SMERRYIGNL 354 (457)
Q Consensus 282 ~~~~~~~----~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~ 354 (457)
..++... .+...++++...+.++.++++.+.+. ++++.++.+++++++.+.|++ ++++.+.. .++...+.++
T Consensus 257 ~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~ 335 (398)
T 2fyf_A 257 LSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQE-RPYTTPFVTDPGLRSQVVG 335 (398)
T ss_dssp GCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH-STTEEESCCSGGGBCSSEE
T ss_pred EehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-cCCceeccCChhhcCCcEE
Confidence 2111111 12445688888888888899876653 889999999999999999999 78888874 2222233366
Q ss_pred EEEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741 355 NLSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE 431 (457)
Q Consensus 355 ~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~ 431 (457)
.+.++ +.+..++...| +||.+.+|.. ..+.+.|||+++.+++++|+++++++|+++++
T Consensus 336 ~~~~~~~~~~~~l~~~L~~~gI~v~~g~~-------------------~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~ 396 (398)
T 2fyf_A 336 TIDFVDDVDAGTVAKILRANGIVDTEPYR-------------------KLGRNQLRVAMFPAVEPDDVSALTECVDWVVE 396 (398)
T ss_dssp EEEECTTSCHHHHHHHHHHTTCBCCSCCT-------------------TTCSSEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHCCcEEecCcc-------------------cCCCCEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 67774 34566777766 5888766521 01237999999999999999999999998875
Q ss_pred H
Q 040741 432 K 432 (457)
Q Consensus 432 ~ 432 (457)
+
T Consensus 397 ~ 397 (398)
T 2fyf_A 397 R 397 (398)
T ss_dssp T
T ss_pred h
Confidence 4
No 92
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.97 E-value=1.1e-30 Score=260.14 Aligned_cols=336 Identities=16% Similarity=0.160 Sum_probs=242.2
Q ss_pred CcEEecCCCCC---CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCh
Q 040741 57 RPLYLDMQATT---PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSGA 127 (457)
Q Consensus 57 ~~i~l~~~~~~---~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g~ 127 (457)
++|+|..+.+. ..++++.+++.+.+..... ... |+. .....++++.+++++ | ++++++++|+|+
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~----~~~-y~~--~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~ 107 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVLEKEPK----SVM-YTP--ANGIPELREELAAFLKKYDHLEVSPENIVITIGG 107 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGG----GGS-CCC--TTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHH
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHHhhccc----ccc-CCC--CCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCH
Confidence 56777655443 2557899999988865210 011 111 123456777777777 8 567789999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC----C--CceEE-
Q 040741 128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR----P--DTGLI- 200 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~----~--~t~li- 200 (457)
|+|++++++++. ++|++|++..+.|.++...++.. |.+++.++.+.++ +|+++++++++ + ++++|
T Consensus 108 t~a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~ 179 (407)
T 2zc0_A 108 TGALDLLGRVLI----DPGDVVITENPSYINTLLAFEQL---GAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIY 179 (407)
T ss_dssp HHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHTT---TCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhc----CCCCEEEEeCCChHHHHHHHHHc---CCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEE
Confidence 999999999997 78999999999999887766544 9999999987665 89999999997 6 78886
Q ss_pred EEeccccccccccChH---HHHHHHHhcCCcEEEehhhhcCCCc----ccC---CCCcccEEEeccccccCCC-CceEEE
Q 040741 201 SVMAVNNEIGVIQPME---EIGQICKEFKIPFHTDAAQALGKIP----VDV---EKWNVSLMSLSGHKIYGPK-GVGALY 269 (457)
Q Consensus 201 ~i~~~~~~~G~~~~l~---~i~~l~~~~~v~li~D~a~~~g~~~----~~~---~~~~~Di~~~s~~K~~g~~-G~G~l~ 269 (457)
++++++||+|.+.|.+ +|.++|++||+++|+|++|+.+... ..+ ...+.++++.|++|.+|+. .+|+++
T Consensus 180 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~ 259 (407)
T 2zc0_A 180 TIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWII 259 (407)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEE
T ss_pred ECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEe
Confidence 5789999999999976 8999999999999999999865321 112 1224567889999988832 289999
Q ss_pred EecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH--H-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC
Q 040741 270 MRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA--K-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM 346 (457)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~--~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 346 (457)
++++..+++......+. ...+.....++..+++.. . ..+++..++++++++++.+.|++.++++.+..+.
T Consensus 260 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 332 (407)
T 2zc0_A 260 AEGEILKKVLMQKQPID-------FCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPI 332 (407)
T ss_dssp CCHHHHHHHHHHHTTTT-------SSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCS
T ss_pred cCHHHHHHHHHHHHhhc-------CCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCC
Confidence 98766555544332211 123555555555566543 3 4577888889999999999998744666554422
Q ss_pred CCcccceEEEEEc-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHH
Q 040741 347 ERRYIGNLNLSFA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRA 422 (457)
Q Consensus 347 ~~~~~~~~~~~~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~ 422 (457)
.+.++.+.++ +.+..++...| + ||.+.+|..|... ....+++||+++.. ++++++++
T Consensus 333 ---~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~---------------~~~~~~iRis~~~~-~~~~i~~~ 393 (407)
T 2zc0_A 333 ---AGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTD---------------ESGKNAIRLNFSRP-SKEEIPIG 393 (407)
T ss_dssp ---BSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSS---------------SCCTTEEEEECSSS-CTTHHHHH
T ss_pred ---CcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCC---------------CCCCCeEEEEeCCC-CHHHHHHH
Confidence 1345555664 34556777766 5 9999998766431 01237999999876 79999999
Q ss_pred HHHHHHHHHHH
Q 040741 423 IELTVKQVEKL 433 (457)
Q Consensus 423 ~~~l~~~~~~~ 433 (457)
+++|+++++++
T Consensus 394 ~~~l~~~l~~~ 404 (407)
T 2zc0_A 394 IKKLAKLYKEK 404 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 93
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.97 E-value=6.8e-30 Score=253.50 Aligned_cols=336 Identities=13% Similarity=0.065 Sum_probs=245.9
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC---CCC-cEEEeCChHH
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA---SPK-EIIFTSGATE 129 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~---~~~-~i~~t~g~T~ 129 (457)
+.++|.|..+.+. +.++++.+++.+.+....+++... ...+..+.+.+.+++.+|. +++ ++++|+|+|+
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~------g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~ 102 (396)
T 3jtx_A 29 GMEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLTA------GLPELRQACANWLKRRYDGLTVDADNEILPVLGSRE 102 (396)
T ss_dssp TCCCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCCTT------CCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHH
T ss_pred CCCeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCCCC------CcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHH
Confidence 3567888777665 678999999999886554443321 1124555566666666674 477 8999999999
Q ss_pred HHHHHHHHhhhhhcCCC-----CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCC-CCCHHHHHHhcCCCceEEEEe
Q 040741 130 SNNVSIKGVMHFYKDKK-----RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADG-IVNLDELRAAIRPDTGLISVM 203 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g-----~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~-~~d~~~le~~i~~~t~li~i~ 203 (457)
|++++++++. ++| ++|++..+.|.++...++.. |.+++.++.+.++ .+|++++++++++++++|+++
T Consensus 103 al~~~~~~~~----~~g~~~~~d~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~ 175 (396)
T 3jtx_A 103 ALFSFVQTVL----NPVSDGIKPAIVSPNPFYQIYEGATLLG---GGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVC 175 (396)
T ss_dssp HHHHHHHHHC----CC---CCCCEEEEEESCCHHHHHHHHHT---TCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEE
T ss_pred HHHHHHHHHh----CCCCccCCCEEEEcCCCcHhHHHHHHHc---CCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEE
Confidence 9999999998 675 79999999999888776665 9999999986444 689999999998899999999
Q ss_pred ccccccccccChH---HHHHHHHhcCCcEEEehhhhcCCC----cccC--------CCCcccEEEeccccccCCCC--ce
Q 040741 204 AVNNEIGVIQPME---EIGQICKEFKIPFHTDAAQALGKI----PVDV--------EKWNVSLMSLSGHKIYGPKG--VG 266 (457)
Q Consensus 204 ~~~~~~G~~~~l~---~i~~l~~~~~v~li~D~a~~~g~~----~~~~--------~~~~~Di~~~s~~K~~g~~G--~G 266 (457)
+++||+|.+.|.+ +|+++|++||+++|+|++|+.... +... ...+.++++.|++|.+|.+| +|
T Consensus 176 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 255 (396)
T 3jtx_A 176 SPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSG 255 (396)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceE
Confidence 9999999999855 499999999999999999985322 2221 02467899999999776554 89
Q ss_pred EEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC
Q 040741 267 ALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM 346 (457)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 346 (457)
+++.+++..+++..... ...++++...+.++.++++. .+.+.+..++++++++++.+.|.+ .. .+.. +
T Consensus 256 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~--~~~~-~ 323 (396)
T 3jtx_A 256 FVAGDAELLKNFLLYRT-------YHGSAMSIPVQRASIAAWDD-EQHVIDNRRLYQEKFERVIPILQQ-VF--DVKL-P 323 (396)
T ss_dssp EEEECHHHHHHHHHHHH-------HHTCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHTT-TS--CCCC-C
T ss_pred EEEeCHHHHHHHHHHHh-------hcccCCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHh-cC--CccC-C
Confidence 99988766555543322 12236677777777666653 345788888999999999999988 42 2222 1
Q ss_pred CCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHH
Q 040741 347 ERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAI 423 (457)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~ 423 (457)
. .+.++.+.++..+..++...| +||.+.+|..|..... ......+++||+++. +++++++++
T Consensus 324 ~--~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~-----------~~~~~~~~iRis~~~--~~~~i~~~l 388 (396)
T 3jtx_A 324 D--ASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTE-----------QGNPGEGYVRIALVA--DVATCVKAA 388 (396)
T ss_dssp S--SSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCT-----------TCCTTTTEEEEECCS--CHHHHHHHH
T ss_pred C--eeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCccc-----------ccCCCCCeEEEEEcC--CHHHHHHHH
Confidence 1 144555566654556666666 4999999988764210 112235899999986 899999999
Q ss_pred HHHHHHH
Q 040741 424 ELTVKQV 430 (457)
Q Consensus 424 ~~l~~~~ 430 (457)
++|++++
T Consensus 389 ~~l~~~l 395 (396)
T 3jtx_A 389 EDIVSLY 395 (396)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998764
No 94
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.97 E-value=1.5e-30 Score=260.52 Aligned_cols=338 Identities=14% Similarity=0.146 Sum_probs=245.0
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhcc---CCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCC-CcEEEeCChH
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRY---GNPHSRTHLFGWESEVAVETARSQIADLIG--ASP-KEIIFTSGAT 128 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~-~~i~~t~g~T 128 (457)
.+.|.|..+.+. ++++++.+++.+.+.... +++.. ....+..+.+.+.+.+.+| +++ +++++|+|||
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~ 101 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKT------FGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGY 101 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCT------TCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHH
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCC------CCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChH
Confidence 467888887766 578999999999887521 11111 1112344444445554455 445 5799999999
Q ss_pred HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC----C--------CCCCHHHHHHhcCCC
Q 040741 129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA----D--------GIVNLDELRAAIRPD 196 (457)
Q Consensus 129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~----~--------~~~d~~~le~~i~~~ 196 (457)
+|++++++++. ++|++|++..+.|.++...++.. |.+++.++.+. + +.+|+++++++++++
T Consensus 102 ~a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~ 174 (422)
T 3fvs_A 102 GALFTAFQALV----DEGDEVIIIEPFFDCYEPMTMMA---GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR 174 (422)
T ss_dssp HHHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTT
T ss_pred HHHHHHHHHHc----CCCCEEEEcCCCchhhHHHHHHc---CCEEEEEecccccccccccccccCCCCCHHHHHhhcCCC
Confidence 99999999987 89999999999999988777665 99999999875 3 368999999999999
Q ss_pred ceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcC----CCcccCC----CCcccEEEeccccccCCCC-
Q 040741 197 TGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALG----KIPVDVE----KWNVSLMSLSGHKIYGPKG- 264 (457)
Q Consensus 197 t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g----~~~~~~~----~~~~Di~~~s~~K~~g~~G- 264 (457)
+++|++++++||+|.+.| +++|+++|++||+++|+|++|+.. ..+..+. ..+.++++.|++|.+|++|
T Consensus 175 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~ 254 (422)
T 3fvs_A 175 TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGW 254 (422)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred ceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccc
Confidence 999999999999999995 889999999999999999999852 2222221 1245688999999877554
Q ss_pred -ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHhhc
Q 040741 265 -VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-------AKKEMDYDHKRITALHDRLLNGIKEK 336 (457)
Q Consensus 265 -~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-------~~~~~~~~~~~~~~~~~~l~~~l~~~ 336 (457)
+|+++++++.+.++...... ...+.+.....++..+++. ..+.+++..++++++++++.+.|++
T Consensus 255 r~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 326 (422)
T 3fvs_A 255 KVGWVLGPDHIMKHLRTVHQN-------SVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQS- 326 (422)
T ss_dssp CCEEEECCHHHHHHHHHHHHT-------TTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred eEEEEEeCHHHHHHHHHHHhh-------ccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 89999987665555433221 1235666777777667764 2234788889999999999999999
Q ss_pred CCCeEEeCCCCCcccceEEEEEccc----c----------chHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741 337 LDGVVVNGSMERRYIGNLNLSFAYV----E----------GESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDE 399 (457)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~----~----------~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~ 399 (457)
+ ++.+..+.. ..++.+.+... + ..++...+ +||.+.+|..|.... ..
T Consensus 327 ~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~------------~~ 390 (422)
T 3fvs_A 327 V-GLKPIIPQG---SYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVP------------HQ 390 (422)
T ss_dssp T-TCEEEBCSB---SSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHH------------HH
T ss_pred c-CCeecCCCe---eeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCc------------CC
Confidence 5 777665322 33344444321 1 23455543 599999998875410 01
Q ss_pred cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
....+++||+++. ++++|++++++|++++++
T Consensus 391 ~~~~~~iRis~~~--~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 391 KHFDHYIRFCFVK--DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp TTSCSEEEEECCC--CHHHHHHHHHHHHHHHHC
T ss_pred CCCCCeEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 1235899999887 899999999999998764
No 95
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.97 E-value=1.6e-29 Score=248.71 Aligned_cols=317 Identities=14% Similarity=0.094 Sum_probs=238.4
Q ss_pred EEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHH------hCCCCCcEEEeCChHHHH
Q 040741 59 LYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADL------IGASPKEIIFTSGATESN 131 (457)
Q Consensus 59 i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~------~g~~~~~i~~t~g~T~a~ 131 (457)
++|+.+.+. +.++++.+++.+.+...... .+.|+.. ...++++.++++ ++++++++++|+|+++++
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~----~~~y~~~---~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al 105 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATE----LNRYPER---DAVELRDELAAYITKQTGVAVTRDNLWAANGSNEIL 105 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGG----TTSCCCT---TCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccc----cccCCCc---cHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHH
Confidence 777776664 57899999999988652100 0111111 124666777776 456677899999999999
Q ss_pred HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccc
Q 040741 132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIG 210 (457)
Q Consensus 132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G 210 (457)
+++++++. ++|++|++..+.|+++...++.. |.+++.++.+.++.+|++++++++++ ++++|++++++||+|
T Consensus 106 ~~~~~~l~----~~gd~Vl~~~~~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG 178 (369)
T 3cq5_A 106 QQLLQAFG----GPGRTALGFQPSYSMHPILAKGT---HTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTG 178 (369)
T ss_dssp HHHHHHHC----STTCEEEEEESSCTHHHHHHHHT---TCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTC
T ss_pred HHHHHHhc----CCCCEEEEcCCChHHHHHHHHHc---CCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCC
Confidence 99999987 88999999999999988776655 99999999887778999999999987 889999999999999
Q ss_pred cccChHHHHHHHHhcCCcEEEehhhhcCCCc---ccC-CCCc-ccEEEeccccccCCCC--ceEEEEecCCCcccccccc
Q 040741 211 VIQPMEEIGQICKEFKIPFHTDAAQALGKIP---VDV-EKWN-VSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLIN 283 (457)
Q Consensus 211 ~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~---~~~-~~~~-~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~ 283 (457)
.+.|++++.++|+.+++++|+|++|+.+... ... ...+ .++++.|++|.+|.+| +|+++++++..+++.....
T Consensus 179 ~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~ 258 (369)
T 3cq5_A 179 DVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRL 258 (369)
T ss_dssp CCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCC
Confidence 9999999999999999999999999876532 222 2334 6799999999887555 7999998765544443221
Q ss_pred CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc
Q 040741 284 GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG 363 (457)
Q Consensus 284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (457)
..+++.....++.++++. .+.+++..++++++++++.+.|++ +++.+... . ..++.+.++ .+.
T Consensus 259 ---------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~-~---~~~~~~~~~-~~~ 321 (369)
T 3cq5_A 259 ---------PYHLSALSQAAAIVALRH-SADTLGTVEKLSVERVRVAARLEE--LGYAVVPS-E---SNFVFFGDF-SDQ 321 (369)
T ss_dssp ---------TTCSCHHHHHHHHHHHHT-HHHHHTHHHHHHHHHHHHHHHHHH--HTCEEECC-S---SSEEEEECC-SSH
T ss_pred ---------CCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh--CCCEECCC-C---CeEEEEECC-CCH
Confidence 124666666666666654 235778888999999999999988 47777632 2 344555554 355
Q ss_pred hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741 364 ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE 431 (457)
Q Consensus 364 ~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~ 431 (457)
.++...| +||.+.+|. ..+++||+++ +++|+++++++|+++++
T Consensus 322 ~~l~~~l~~~gi~v~~~~----------------------~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 322 HAAWQAFLDRGVLIRDVG----------------------IAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp HHHHHHHHHTTEECBCCS----------------------CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCEEEEECC----------------------CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 6666666 688887651 0278999998 68999999999988764
No 96
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.97 E-value=6.9e-30 Score=253.08 Aligned_cols=332 Identities=9% Similarity=0.090 Sum_probs=240.1
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHH-HHHHHHHH----hC--CCCCcEEEeCCh
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVET-ARSQIADL----IG--ASPKEIIFTSGA 127 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~la~~----~g--~~~~~i~~t~g~ 127 (457)
.++++|..+.+. +.++++.+++.+.+.... ..|+.. ..+ +++.++++ .| ++++++++|+|+
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~----~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~ 96 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLMHGV-------FGYSRW----KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSV 96 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHTTCC-------CCCCCS----CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCH
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHhCCC-------CCCCCC----ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCH
Confidence 356788776654 578999999999885311 111111 234 55555555 46 667789999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCC---CCCHHHHHHhcCC-CceEEEEe
Q 040741 128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADG---IVNLDELRAAIRP-DTGLISVM 203 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~---~~d~~~le~~i~~-~t~li~i~ 203 (457)
|+|++++++++. ++|++|++..+.|.++...++.. |.+++.++.+.++ .+|++++++++++ ++++|+++
T Consensus 97 ~~al~~~~~~l~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~ 169 (390)
T 1d2f_A 97 IYMVSELIRQWS----ETGEGVVIHTPAYDAFYKAIEGN---QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLC 169 (390)
T ss_dssp HHHHHHHHHHSS----CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEE
T ss_pred HHHHHHHHHHhc----CCCCEEEEcCCCcHHHHHHHHHC---CCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEe
Confidence 999999999987 88999999999999988877655 9999999986432 4899999999986 78999999
Q ss_pred ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccCCCCc---ccEEEeccccccCCCC--ceEEEEe
Q 040741 204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDVEKWN---VSLMSLSGHKIYGPKG--VGALYMR 271 (457)
Q Consensus 204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~~~~---~Di~~~s~~K~~g~~G--~G~l~~~ 271 (457)
+++||+|.+.| +++|+++|++||+++|+|++|+.+.. ..++.... .|. +.|++|.+|++| +|+++++
T Consensus 170 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~ 248 (390)
T 1d2f_A 170 SPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIE 248 (390)
T ss_dssp SSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEEC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEEC
Confidence 99999999988 78999999999999999999986432 22222221 266 899999887555 7999986
Q ss_pred -cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcc
Q 040741 272 -RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRY 350 (457)
Q Consensus 272 -~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 350 (457)
++..+++.....+ ....++++...+.++.++++...+.+++..++++++++++.+.|++.+|++.+..+..
T Consensus 249 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--- 320 (390)
T 1d2f_A 249 NSSSRDAYLSALKG-----RDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQS--- 320 (390)
T ss_dssp SHHHHHHHHHHHHT-----TSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSB---
T ss_pred CHHHHHHHHHHHhh-----hcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCc---
Confidence 4444444433320 1122366777777777777654445788888999999999999987356776554321
Q ss_pred cceEEEEEcc--ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741 351 IGNLNLSFAY--VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL 425 (457)
Q Consensus 351 ~~~~~~~~~~--~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~ 425 (457)
+.++.+.++. .+..++...| +||.+.+|..|.. ...+++||+++. +++++++++++
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~~Ris~~~--~~~~l~~~l~~ 381 (390)
T 1d2f_A 321 TYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGE-----------------EGRGFVRLNAGC--PRSKLEKGVAG 381 (390)
T ss_dssp CSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHHH
T ss_pred cEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCC-----------------CCCCeEEEEecC--CHHHHHHHHHH
Confidence 2233455553 3556666655 4899998876632 123799999997 58999999999
Q ss_pred HHHHHHHH
Q 040741 426 TVKQVEKL 433 (457)
Q Consensus 426 l~~~~~~~ 433 (457)
|+++++++
T Consensus 382 l~~~l~~~ 389 (390)
T 1d2f_A 382 LINAIRAV 389 (390)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998764
No 97
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.97 E-value=1.7e-31 Score=263.15 Aligned_cols=335 Identities=14% Similarity=0.107 Sum_probs=233.8
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-hhhhcCCC
Q 040741 68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV-MHFYKDKK 146 (457)
Q Consensus 68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~-~~~~~~~g 146 (457)
++++++.+++.+.+.+.+ + ...+...++++.+++++|.+ ++++++|||+|++++++++ . ++|
T Consensus 14 ~~~~~~~~a~~~~~~~~~-------~----~~~~~~~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~~----~~g 76 (373)
T 3frk_A 14 EIEYEIKFKFEEIYKRNW-------F----ILGDEDKKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYDI----GFG 76 (373)
T ss_dssp HHHHHHHHHHHHHHHHTC-------C----SSSHHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTTC----CTT
T ss_pred CCCHHHHHHHHHHHHCCC-------c----cCCchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCC----CCc
Confidence 456788888888876531 1 11267889999999999986 5999999999999999998 5 889
Q ss_pred CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhc
Q 040741 147 RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEF 225 (457)
Q Consensus 147 ~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~ 225 (457)
++|+++.++|.++..+++.. |+++++++++ .++.+|++++++++++++++|+ ++|++|.+.|+++|.++|++|
T Consensus 77 d~Vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~ 150 (373)
T 3frk_A 77 DEVIVPSNTFIATALAVSYT---GAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKY 150 (373)
T ss_dssp CEEEEETTSCTHHHHHHHHH---SCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHc---CCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHc
Confidence 99999999999999887776 9999999988 5678999999999999998887 567899999999999999999
Q ss_pred CCcEEEehhhhcCCCcccCCCCc--ccEEEeccc--cccCC-CCceEEEEecC-CCccccccccCCccccccccCCCCh-
Q 040741 226 KIPFHTDAAQALGKIPVDVEKWN--VSLMSLSGH--KIYGP-KGVGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPT- 298 (457)
Q Consensus 226 ~v~li~D~a~~~g~~~~~~~~~~--~Di~~~s~~--K~~g~-~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~- 298 (457)
|+++|+|++|+.|.. ++....+ .|++++|++ |.+|+ ..+|+++.+++ ..+++.+...++.... +.......
T Consensus 151 ~~~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~g~~ 228 (373)
T 3frk_A 151 NLKLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKK-YHHIYKGFN 228 (373)
T ss_dssp TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBT-TBCCSCCCB
T ss_pred CCEEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccC-Ccccccccc
Confidence 999999999998876 4444444 689988865 97776 33577777653 3344444444332211 10000000
Q ss_pred hHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEe
Q 040741 299 PLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAV 375 (457)
Q Consensus 299 ~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~ 375 (457)
..+..+.+++... .+.+++..++.+++.+++.+.|.+ ++ +.+...+......+..+.+...+...+...| +||.+
T Consensus 229 ~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v 306 (373)
T 3frk_A 229 SRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINN-PN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYLNNNGIGT 306 (373)
T ss_dssp CCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCC-TT-EECCCCCTTEECCCSSEEEEESSHHHHHHHHHHTTBCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCCc
Confidence 0111222233322 235678888899999999999988 66 6665433322233333334334566777777 68888
Q ss_pred cccCccCCCCCChhHHHHHcCCCc-------cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 376 SSGSACTSASLEPSYVLRALGVDE-------DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 376 ~~g~~~~~~~~~~~~~l~~~g~~~-------~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
+.+..+... ..| ....++... ....+.||++++..+|++|||+++++|++...+
T Consensus 307 ~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 307 LIHYPIPIH-LQQ--AYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp BCSCSSCGG-GSG--GGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred ccCcCCccc-cCh--HHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 866421110 011 112223211 123379999999999999999999999876644
No 98
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.97 E-value=1.7e-29 Score=252.18 Aligned_cols=309 Identities=13% Similarity=0.090 Sum_probs=223.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEE
Q 040741 96 GWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEIT 174 (457)
Q Consensus 96 ~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~ 174 (457)
+....+...++++++++++|.+ ++++++|||+|++++++++. ++|++|+++.++|.++...+.. ++..|++++
T Consensus 51 ~~~~~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~ 124 (412)
T 2cb1_A 51 ARQKDPTAKALEERLKALEGAL--EAVVLASGQAATFAALLALL----RPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVR 124 (412)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEETTCCHHHHHHHHHTTTTTTCEEE
T ss_pred CCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEE
Confidence 3333467899999999999986 59999999999999999986 8999999999999988877654 455699999
Q ss_pred EEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEe
Q 040741 175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSL 254 (457)
Q Consensus 175 ~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~ 254 (457)
+++.+ ++++++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+.........+.|++++
T Consensus 125 ~~~~~------~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~ 198 (412)
T 2cb1_A 125 YVDPE------PEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVE 198 (412)
T ss_dssp EECSS------HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEE
T ss_pred EECCC------HHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEE
Confidence 99853 899999999999999999999999999999999999999999999999999873333333457899999
Q ss_pred ccccccC-CCC-ceEEEEecCCCc-----ccc-ccccCC---------ccccccc------cC-CCChhHHHHHHHHHHH
Q 040741 255 SGHKIYG-PKG-VGALYMRRRPRI-----RVE-PLINGG---------GQERGIR------SG-TLPTPLIVGFGSACEI 310 (457)
Q Consensus 255 s~~K~~g-~~G-~G~l~~~~~~~~-----~~~-~~~~~~---------~~~~~~~------~~-t~~~~~~~al~~al~~ 310 (457)
|+||+++ |.+ +|++++.++... .+. +...+. .....++ .| ..++...+.....+
T Consensus 199 S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l-- 276 (412)
T 2cb1_A 199 SLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGL-- 276 (412)
T ss_dssp ETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHG--
T ss_pred CCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCC--
Confidence 9999664 554 688877663321 011 100000 0000000 11 11222221111111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEe-CCCC-------------CcccceEEEEEccccchHHHhcc--cCeE
Q 040741 311 AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVN-GSME-------------RRYIGNLNLSFAYVEGESLLMGL--KEVA 374 (457)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l--~~i~ 374 (457)
+.+....++..++++++.+.|.+ .+++.++ .+.. ...++++.+.+ + +.+.+...+ .+|.
T Consensus 277 --~~l~~~~~~~~~~~~~l~~~L~~-~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~~~~~~~~l~~~~i~ 351 (412)
T 2cb1_A 277 --ETVALRVARMSETARFLAERLQG-HPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-DLERASRFLGAIRLL 351 (412)
T ss_dssp --GGHHHHHHHHHHHHHHHHHHHHT-CTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-SHHHHHHHHHHCSSE
T ss_pred --chHHHHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-CHHHHHHHHHhCCee
Confidence 23456666777899999999998 7888643 3221 13577888888 5 555555555 5888
Q ss_pred ecccC---------ccCCCCC--ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741 375 VSSGS---------ACTSASL--EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK 428 (457)
Q Consensus 375 ~~~g~---------~~~~~~~--~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~ 428 (457)
+ .++ +|++... -|+.++.++|+.+ +.||++++.++++++|+.++++|++
T Consensus 352 ~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~----~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 352 K-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTP----GLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp E-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred e-ecccCCCcceeecCcccccccCCHHHHHhcCCCC----CeEEEEeccCCHHHHHHHHHHHHhh
Confidence 8 773 5655443 2667888888864 8999999999999999999998864
No 99
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.97 E-value=2.6e-30 Score=257.53 Aligned_cols=329 Identities=13% Similarity=0.030 Sum_probs=243.1
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhc--cCCCCCCccchhhhHHHHHHHHHHHHHHHh----CCC--C-CcEEEeC
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVETARSQIADLI----GAS--P-KEIIFTS 125 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~~--~-~~i~~t~ 125 (457)
.++++|..+.+. ..++++.+++.+.+... .+++. .....++++.+++++ |.+ + +++++|+
T Consensus 47 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~----------~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~ 116 (404)
T 2o1b_A 47 LPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGA----------FHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILY 116 (404)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCC----------TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEES
T ss_pred CCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCC----------CCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcC
Confidence 456788776665 46799999999887431 11111 012345666666666 864 3 6899999
Q ss_pred ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEec
Q 040741 126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMA 204 (457)
Q Consensus 126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~ 204 (457)
|+|+|++++++++. ++|++|++..+.|.++...++.. |.+++.++.+.+ ..+|+++|++++++++++|++++
T Consensus 117 G~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~ 189 (404)
T 2o1b_A 117 GTKNGLVAVPTCVI----NPGDYVLLPDPGYTDYLAGVLLA---DGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTY 189 (404)
T ss_dssp SHHHHHHHHHHHHC----CTTCEEEEEESCCSSHHHHHHHT---TCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECS
T ss_pred CcHHHHHHHHHHhc----CCCCEEEEcCCCchhHHHHHHHC---CCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcC
Confidence 99999999999987 88999999999999998877655 999999998753 35899999999887889999999
Q ss_pred cccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCCC----CcccEEEeccccccCCCC--ceEEEEec
Q 040741 205 VNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVEK----WNVSLMSLSGHKIYGPKG--VGALYMRR 272 (457)
Q Consensus 205 ~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~----~~~Di~~~s~~K~~g~~G--~G~l~~~~ 272 (457)
++||+|.+.| +++|+++|++||+++|+|++|+.+.. +.++.. .+.|+++.|++|.+|.+| +|++++++
T Consensus 190 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 269 (404)
T 2o1b_A 190 PNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNK 269 (404)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecCH
Confidence 9999999987 77899999999999999999986432 222222 256799999999887555 79999987
Q ss_pred CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741 273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG 352 (457)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 352 (457)
+.++++...... ...+.+.....++..+++...+.+++..++++++++++.+.|++ + ++.+..+.. +.
T Consensus 270 ~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~ 337 (404)
T 2o1b_A 270 DMIQALKKYQTH-------TNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAK-A-DLPFVHAKG---GI 337 (404)
T ss_dssp HHHHHHHHHHHH-------HCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEECCCB---SS
T ss_pred HHHHHHHHHHhh-------ccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-c-CCeecCCCc---ce
Confidence 766555443321 12356667777666677654445788888999999999999998 5 666654321 23
Q ss_pred eEEEEEc-cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741 353 NLNLSFA-YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK 428 (457)
Q Consensus 353 ~~~~~~~-~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~ 428 (457)
++.+.++ ..+..++...+ +||.+.+|..|.. ...+++||+++. +++++++++++|++
T Consensus 338 ~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRis~~~--~~e~l~~~l~~l~~ 398 (404)
T 2o1b_A 338 YVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGE-----------------NGNRYVRISLAL--DDQKLDEAAIRLTE 398 (404)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCG-----------------GGTTEEEEECCS--CTTHHHHHHHHHHG
T ss_pred EEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCc-----------------CCCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence 3455554 33445666654 4999998876532 123799999986 67899999999988
Q ss_pred HHHH
Q 040741 429 QVEK 432 (457)
Q Consensus 429 ~~~~ 432 (457)
++++
T Consensus 399 ~l~~ 402 (404)
T 2o1b_A 399 LAYL 402 (404)
T ss_dssp GGGG
T ss_pred HHHh
Confidence 7653
No 100
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.97 E-value=2.6e-29 Score=255.27 Aligned_cols=345 Identities=14% Similarity=0.159 Sum_probs=244.1
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK 136 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~ 136 (457)
..++|+ +.+....|++.+++.+.+.. + +|.. .+....+..+...++++++++++|.+. .+++++|||+|+.++++
T Consensus 67 ~~~~lg-~~~~~~~p~v~~~~~~~~~~-~-~~~~-~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~ 141 (474)
T 1wyu_B 67 TFYPLG-SCTMKYNPKLHEEAARLFAD-L-HPYQ-DPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGIL 141 (474)
T ss_dssp SCCCBT-TTCCCCCCHHHHHHHHTTSS-C-CTTS-CGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHH
T ss_pred Cccccc-cccccCCHHHHHHHHHHHHh-c-CCCC-chhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHH
Confidence 567888 45556667888888776322 1 3332 111244556889999999999999875 46788999999998887
Q ss_pred HhhhhhcCCCC-----EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741 137 GVMHFYKDKKR-----HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211 (457)
Q Consensus 137 ~~~~~~~~~g~-----~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~ 211 (457)
++..+..++|+ +|+++.+.|+++..++... |++++.++.+.++.+|+++|++++++++++|+++++ |++|.
T Consensus 142 ~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~---G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~ 217 (474)
T 1wyu_B 142 IIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMA---GYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNP-NTLGL 217 (474)
T ss_dssp HHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHT---TCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSC
T ss_pred HHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHC---CCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcc
Confidence 76543324665 9999999999999887665 999999999888999999999999999999999997 57999
Q ss_pred c-cChHHHHHHHHhcCCcEEEehhhhcCCC-cccCCCCcccEEEeccccccC-CC-----CceEEEEecCCCcccc-ccc
Q 040741 212 I-QPMEEIGQICKEFKIPFHTDAAQALGKI-PVDVEKWNVSLMSLSGHKIYG-PK-----GVGALYMRRRPRIRVE-PLI 282 (457)
Q Consensus 212 ~-~~l~~i~~l~~~~~v~li~D~a~~~g~~-~~~~~~~~~Di~~~s~~K~~g-~~-----G~G~l~~~~~~~~~~~-~~~ 282 (457)
+ .++++|.++|++||+++|+|++|+.+.. ......+++|++++|+||.++ |. |+|+++++++..+++. +..
T Consensus 218 ~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~ 297 (474)
T 1wyu_B 218 FERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLV 297 (474)
T ss_dssp CCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEE
T ss_pred cCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCee
Confidence 8 6999999999999999999999986654 223334578999999999554 42 5899999988766654 221
Q ss_pred c-CC-cc------c---cccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcc
Q 040741 283 N-GG-GQ------E---RGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRY 350 (457)
Q Consensus 283 ~-~~-~~------~---~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 350 (457)
. ++ .. . +++..++.+...+.++..++... .+++++..++..++++++.+.|.+ + ++.+..+. ..
T Consensus 298 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-~~- 373 (474)
T 1wyu_B 298 ERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-K-GYRVPYDG-PS- 373 (474)
T ss_dssp EECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCBCSSCS-SC-
T ss_pred eccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-CcEecCCC-Cc-
Confidence 1 11 00 0 12233345544444444444322 345788899999999999999999 5 77663221 11
Q ss_pred cceEEEEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741 351 IGNLNLSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV 427 (457)
Q Consensus 351 ~~~~~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~ 427 (457)
...+.+.+. +.+..++...| +||.+. +..+ + ....+.+||+++..++++++++++++|+
T Consensus 374 ~~~~~~~~~~~~~~~~l~~~L~~~Gi~~~-~~~~--------------~---~~~~~~lRis~~~~~t~e~id~~~~~L~ 435 (474)
T 1wyu_B 374 MHEFVAQPPEGFRALDLAKGLLELGFHPP-TVYF--------------P---LIVKEALMVEPTETEAKETLEAFAEAMG 435 (474)
T ss_dssp CSCEEEBCSTTCCHHHHHHHHHHTTCCCC-EESC--------------S---TTSTTCEEECCCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHCCcccc-cccc--------------c---cccCCEEEEEeecCCCHHHHHHHHHHHH
Confidence 111223332 24556676666 576542 2111 0 1123799999999999999999999999
Q ss_pred HHHHH
Q 040741 428 KQVEK 432 (457)
Q Consensus 428 ~~~~~ 432 (457)
+++++
T Consensus 436 ~~~~~ 440 (474)
T 1wyu_B 436 ALLKK 440 (474)
T ss_dssp HHHTS
T ss_pred HHHHh
Confidence 98764
No 101
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.97 E-value=1.7e-29 Score=252.02 Aligned_cols=326 Identities=17% Similarity=0.207 Sum_probs=241.7
Q ss_pred EecCCCCC----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741 60 YLDMQATT----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI 135 (457)
Q Consensus 60 ~l~~~~~~----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al 135 (457)
|+|+.++. +.+|++.+++.+.+... +.... .+...+...+...++++++++++|.+. .+++++||+|+..++
T Consensus 61 ~ld~~s~~~l~~~~~p~v~~a~~~~l~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~~--~i~~~sGt~a~~~~l 136 (409)
T 3kki_A 61 DIILQSNDYLALANHPLIKARLAKSLLEE-QQSLF-MSASFLQNDYDKPMIEKRLAKFTGFDE--CLLSQSGWNANVGLL 136 (409)
T ss_dssp SEECCCSCTTCCTTCHHHHHHHHHHHHSC-CCCCC-SBGGGGCSTTTSCHHHHHHHHHHTCSE--EEEESCHHHHHHHHH
T ss_pred eEEeeccCccCCcCCHHHHHHHHHHHHHc-CCCCC-ccccccCCcHHHHHHHHHHHHHhCCCe--EEEecchHHHHHHHH
Confidence 45555544 24799999999998753 22111 112222223566789999999999864 666777899999999
Q ss_pred HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccC
Q 040741 136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQP 214 (457)
Q Consensus 136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~ 214 (457)
+++. ++||.|+++.++|+++..+++.. |.+++.++. .|++++++++++ ++++|++++++||+|.+.|
T Consensus 137 ~~~~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~ 204 (409)
T 3kki_A 137 QTIC----QPNTNVYIDFFAHMSLWEGARYA---NAQAHPFMH-----NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAP 204 (409)
T ss_dssp HHHC----CTTCEEEEETTSCHHHHHHHHHT---TCEEEEECT-----TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCC
T ss_pred HHhc----CCCCEEEECCCcCHHHHHHHHHc---CCeEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCC
Confidence 9988 89999999999999999887766 999888875 489999999975 5899999999999999999
Q ss_pred hHHHHHHHHhcCCcEEEehhhhcCCCcc---------cCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCC
Q 040741 215 MEEIGQICKEFKIPFHTDAAQALGKIPV---------DVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGG 285 (457)
Q Consensus 215 l~~i~~l~~~~~v~li~D~a~~~g~~~~---------~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~ 285 (457)
+++|.++|++||++||+|++|+.+.... +. ..++|+++.|++|.+|+.| |+++.+++..+.+.......
T Consensus 205 l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~-~~~~di~~~s~sK~~~~~g-g~v~~~~~~~~~~~~~~~~~ 282 (409)
T 3kki_A 205 LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRA-GAIWCNNEVNRCVPFISYPA 282 (409)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTC-GGGCSEEEEESSSTTCSSC-EEEEESSSGGGTHHHHCHHH
T ss_pred HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCC-CCCCCEEEeecchhhCCCc-eEEEECHHHHHHHHHhCcCc
Confidence 9999999999999999999998754321 11 1257899999999888765 99999887666554322111
Q ss_pred ccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc-cch
Q 040741 286 GQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-EGE 364 (457)
Q Consensus 286 ~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 364 (457)
...+..+...++++.++++...+. ++..++++++++++.+.|++ + ++.+.+ ...++.+.++.. +..
T Consensus 283 -----~~~~~~~~~~~aa~~aal~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-g~~~~~-----~~~~~~~~~~~~~~~~ 349 (409)
T 3kki_A 283 -----IFSSTLLPYEAAGLETTLEIIESA-DNRRQHLDRMARKLRIGLSQ-L-GLTIRS-----ESQIIGLETGDERNTE 349 (409)
T ss_dssp -----HHSBCCCHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHT-T-TCCCCC-----SSSEEEEEEESHHHHH
T ss_pred -----cccCCCcHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-c-CCccCC-----CCCEEEEEeCCHHHHH
Confidence 112245666777777788776543 77888999999999999998 4 555442 245555665432 234
Q ss_pred HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
++...| +||.+.++..+.. ....++|||+++..++++|+++++++|++++++
T Consensus 350 ~~~~~L~~~Gv~v~~~~~~~~----------------~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 350 KVRDYLESNGVFGSVFCRPAT----------------SKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHTTEECEEECTTSS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCceEeeeCCCCc----------------CCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 555555 6888776432211 123489999999999999999999999999875
No 102
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.97 E-value=3.6e-29 Score=256.34 Aligned_cols=350 Identities=16% Similarity=0.143 Sum_probs=236.2
Q ss_pred CCcEEecCCCCCCCCHHHHH-HHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHH
Q 040741 56 GRPLYLDMQATTPVDPRVLD-AMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--PKEIIFTSGATESNN 132 (457)
Q Consensus 56 ~~~i~l~~~~~~~~~~~v~~-a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~i~~t~g~T~a~~ 132 (457)
..+.||++..++..++.++. .+..++ |+....+..+........++++++++++|++ +++++||+|||+|+.
T Consensus 91 ~~p~~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~ 165 (504)
T 2okj_A 91 GHPRFFNQLSTGLDIIGLAGEWLTSTA-----NTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNM 165 (504)
T ss_dssp TCTTEESSSSCCCCHHHHHHHHHHHHH-----CCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHH
T ss_pred CCCCEEEEccCCCCHHHHHHHHHHHhh-----ccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHH
Confidence 35679988765555544433 222222 2222233333334455666789999999998 678999999999999
Q ss_pred HHHHHhhhhh----cCCC-----C-EEEEcCCCCcchHHHHHHHHhcCc-EEEEEeCCCCCCCCHHHHHHhcCC------
Q 040741 133 VSIKGVMHFY----KDKK-----R-HVITTQTEHKCVLDSCRHLQQEGF-EITYLPVGADGIVNLDELRAAIRP------ 195 (457)
Q Consensus 133 ~al~~~~~~~----~~~g-----~-~vi~~~~~h~~~~~~~~~~~~~G~-~v~~v~~~~~~~~d~~~le~~i~~------ 195 (457)
+++.++.... +++| + .|+++...|+++..+++.+.. |. +++.+|.+.++.+|+++|+++|++
T Consensus 166 ~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~-g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~ 244 (504)
T 2okj_A 166 YSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGF-GTDNVILIKCNERGKIIPADFEAKILEAKQKGY 244 (504)
T ss_dssp HHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS-CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCC-CcccEEEEecCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999886321 1134 5 789999999999999887722 33 899999988899999999999976
Q ss_pred CceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCc-----ccCCC-CcccEEEeccccccC-CCCceEE
Q 040741 196 DTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP-----VDVEK-WNVSLMSLSGHKIYG-PKGVGAL 268 (457)
Q Consensus 196 ~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~-----~~~~~-~~~Di~~~s~~K~~g-~~G~G~l 268 (457)
++++|++++++|++|.+.|+++|+++|++||+++|+|++++.+... ..+.. .++|++++++||++| |.|+|++
T Consensus 245 ~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l 324 (504)
T 2okj_A 245 VPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAI 324 (504)
T ss_dssp EEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEE
T ss_pred CceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEE
Confidence 5899999999999999999999999999999999999999877653 22332 268999999999765 8889999
Q ss_pred EEecC-CCcc----ccccccCCccccc--c-------ccC-CCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040741 269 YMRRR-PRIR----VEPLINGGGQERG--I-------RSG-TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGI 333 (457)
Q Consensus 269 ~~~~~-~~~~----~~~~~~~~~~~~~--~-------~~~-t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l 333 (457)
+++++ .+.+ ..++..+++...+ . ..+ ......+.+...++. .++++++.++..++++++.+.|
T Consensus 325 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg--~~g~~~~~~~~~~~a~~l~~~L 402 (504)
T 2okj_A 325 LVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--TVGFENQINKCLELAEYLYAKI 402 (504)
T ss_dssp EESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 99875 3222 2233322211000 0 000 011222222222322 3468889999999999999999
Q ss_pred hhcCCCeEEeCCCCCcccceEEEEEcccc-----------------chHHHhcc--cCeEecccCccCCCCCChhHHHHH
Q 040741 334 KEKLDGVVVNGSMERRYIGNLNLSFAYVE-----------------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRA 394 (457)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~ 394 (457)
++ +++++++.+.. ...+++.|.+.... ...+...| +|+.+..+...
T Consensus 403 ~~-~~~~~~~~~~~-p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~------------- 467 (504)
T 2okj_A 403 KN-REEFEMVFNGE-PEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQ------------- 467 (504)
T ss_dssp TT-CTTEEESSSSC-CSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEE-------------
T ss_pred hc-CCCEEEEecCC-CCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEE-------------
Confidence 99 89999986311 22444555542111 12333343 35322211100
Q ss_pred cCCCccCCCCeEEEecC-CCCCHHHHHHHHHHHHHHHHHH
Q 040741 395 LGVDEDMAHTSIRFGIG-RFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 395 ~g~~~~~~~~~iRi~~~-~~~t~edid~~~~~l~~~~~~~ 433 (457)
....+++||++. ..++++||++++++|+++++++
T Consensus 468 -----~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 468 -----GDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp -----TTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred -----CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 001158999996 8899999999999999887643
No 103
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.97 E-value=4.7e-30 Score=254.37 Aligned_cols=335 Identities=14% Similarity=0.145 Sum_probs=235.3
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhh---
Q 040741 65 ATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHF--- 141 (457)
Q Consensus 65 ~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~--- 141 (457)
+...+++++++++.+.+.+.+ +. ..+...++++.+++++|.+ +++++++||+|++++++++...
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~~~ 75 (390)
T 3b8x_A 9 ASSTWDDLEYKAIQSVLDSKM-------FT----MGEYVKQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTKKP 75 (390)
T ss_dssp CCCCCCHHHHHHHHHHHHHTC-------CS----SCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSSSC
T ss_pred CCCCCCHHHHHHHHHHHHcCC-------CC----CChHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhhhc
Confidence 456789999999999987521 11 1257889999999999986 5899999999999999988200
Q ss_pred hcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHH
Q 040741 142 YKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQ 220 (457)
Q Consensus 142 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~ 220 (457)
..++|++|+++.++|.++..+++.. |+++++++++.+ +.+|++++++++++++++|++++ ++|...|+++|.+
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~ 149 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYYPLQQY---GLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINK 149 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHH
T ss_pred CCCCcCEEEECCCCcHHHHHHHHHc---CCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHH
Confidence 0178999999999999999887765 999999999865 88999999999999999998874 5788899999999
Q ss_pred HHHhcCCcEEEehhhhcCCCcccCCCCcc--cEEEecc--cc-ccCCCCceEEEEec-CCCccccccccCC--cc-----
Q 040741 221 ICKEFKIPFHTDAAQALGKIPVDVEKWNV--SLMSLSG--HK-IYGPKGVGALYMRR-RPRIRVEPLINGG--GQ----- 287 (457)
Q Consensus 221 l~~~~~v~li~D~a~~~g~~~~~~~~~~~--Di~~~s~--~K-~~g~~G~G~l~~~~-~~~~~~~~~~~~~--~~----- 287 (457)
+|++||+++|+|++|+.|... +....+. |+.++|+ +| +.++.| |++++++ +..+++.+...++ .+
T Consensus 150 l~~~~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~ 227 (390)
T 3b8x_A 150 IIGGRDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKN 227 (390)
T ss_dssp HHTTSCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEE
T ss_pred HHHHcCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccc
Confidence 999999999999999988765 3333343 5655543 34 545565 8888876 3333444433322 10
Q ss_pred ------------------ccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCc
Q 040741 288 ------------------ERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERR 349 (457)
Q Consensus 288 ------------------~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 349 (457)
..+++.++.+...++++.. + +.+++..++.+++++++.+.|.+ ++++.+.+++...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-l----~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~ 301 (390)
T 3b8x_A 228 KVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ-L----KKLPRFISVRRKNAEYFLDKFKD-HPYLDVQQETGES 301 (390)
T ss_dssp TTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHTT-CSSEEECCCCSBC
T ss_pred cccccccccccccccceeccccccCcCHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHhcC-CCCcccCCCCCCc
Confidence 0122233444444444432 3 34667888899999999999998 8899887643222
Q ss_pred ccceEEEEEc---cccchHHHhcc--cCeEecc---cCccCC-CCCCh-hHH-HHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741 350 YIGNLNLSFA---YVEGESLLMGL--KEVAVSS---GSACTS-ASLEP-SYV-LRALGVDEDMAHTSIRFGIGRFTTEAE 418 (457)
Q Consensus 350 ~~~~~~~~~~---~~~~~~~~~~l--~~i~~~~---g~~~~~-~~~~~-~~~-l~~~g~~~~~~~~~iRi~~~~~~t~ed 418 (457)
....+.+.++ +.+.+++...| +||.++. |..|.. +..+. +++ +.+++..+....+.|||+++..+|++|
T Consensus 302 ~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~d 381 (390)
T 3b8x_A 302 SWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDE 381 (390)
T ss_dssp CCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHH
T ss_pred ccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHH
Confidence 2223444555 34566777777 6888876 444543 21110 000 112222333345789999999999999
Q ss_pred HHHHHHHH
Q 040741 419 VDRAIELT 426 (457)
Q Consensus 419 id~~~~~l 426 (457)
||+++++|
T Consensus 382 i~~i~~~l 389 (390)
T 3b8x_A 382 IDYLREVL 389 (390)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99999876
No 104
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.97 E-value=6e-30 Score=253.32 Aligned_cols=334 Identities=15% Similarity=0.144 Sum_probs=231.5
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-hhhhcCCC
Q 040741 68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV-MHFYKDKK 146 (457)
Q Consensus 68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~-~~~~~~~g 146 (457)
.+++++++++.+.+.+. + + ++...+...++++.+++++|.+ + .+++++||+|++++++++ . ++|
T Consensus 14 ~~~~~~~~a~~~~l~~~--~-----~--~~~~~~~~~~l~~~la~~~~~~-~-~i~~~sGt~al~~~l~~l~~----~~g 78 (388)
T 1b9h_A 14 QYDDAERNGLVRALEQG--Q-----W--WRMGGDEVNSFEREFAAHHGAA-H-ALAVTNGTHALELALQVMGV----GPG 78 (388)
T ss_dssp CCCHHHHHHHHHHHHTS--C-----C--BTTTCSHHHHHHHHHHHHTTCS-E-EEEESCHHHHHHHHHHHTTC----CTT
T ss_pred CCCHHHHHHHHHHHHcC--C-----e--eecCCHHHHHHHHHHHHHhCCC-e-EEEeCCHHHHHHHHHHHcCC----CCc
Confidence 45689999999998752 1 0 1112257889999999999986 3 445555699999999998 5 789
Q ss_pred CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhc
Q 040741 147 RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEF 225 (457)
Q Consensus 147 ~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~ 225 (457)
++|+++.++|+++..+++.. |+++++++++.+ +.+|+++|++++++++++|+ ++|++|.+.|+++|.++|++|
T Consensus 79 d~Vi~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~ 152 (388)
T 1b9h_A 79 TEVIVPAFTFISSSQAAQRL---GAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADT 152 (388)
T ss_dssp CEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHH
T ss_pred CEEEECCCccHHHHHHHHHc---CCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHc
Confidence 99999999999998877655 999999999854 78999999999998888877 788999999999999999999
Q ss_pred CCcEEEehhhhcCCCc--ccCCCCc-ccEEEeccccccCCCCceEEEEecCCC---ccccccccCCcccc------cccc
Q 040741 226 KIPFHTDAAQALGKIP--VDVEKWN-VSLMSLSGHKIYGPKGVGALYMRRRPR---IRVEPLINGGGQER------GIRS 293 (457)
Q Consensus 226 ~v~li~D~a~~~g~~~--~~~~~~~-~Di~~~s~~K~~g~~G~G~l~~~~~~~---~~~~~~~~~~~~~~------~~~~ 293 (457)
|+++|+|++|+.|..+ .++..++ +++.++|.+|.+++..+|+++.+++.+ +++.... +++... ....
T Consensus 153 ~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 231 (388)
T 1b9h_A 153 GVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRH-SCGRPRDDRRYFHKIA 231 (388)
T ss_dssp TCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHT-BTTCCTTCSSCCCCSC
T ss_pred CCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHH-hCCCCccCccceeecc
Confidence 9999999999987654 2333333 444455555855433469998887533 3332222 111110 0112
Q ss_pred CC---CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC---CcccceEEEEEccc---cch
Q 040741 294 GT---LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME---RRYIGNLNLSFAYV---EGE 364 (457)
Q Consensus 294 ~t---~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~ 364 (457)
|+ ++...++++.. ..+.+++..++.+++++++.+.|++ ++++.+.++.. ...+.++.+.++.. +..
T Consensus 232 g~~~~~~~~~~a~~~~----~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (388)
T 1b9h_A 232 GSNMRLNEFSASVLRA----QLARLDEQIAVRDERWTLLSRLLGA-IDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRN 306 (388)
T ss_dssp CCBCBCBHHHHHHHHH----HHTTHHHHHHHHHHHHHHHHHHHHT-STTCEECCCCTTCCBCCCSEEEEECTTCCHHHHH
T ss_pred cccCCcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCcCCCccceEEEEEEeCCcCcccHH
Confidence 23 33333332222 2234667788888999999999998 88888876432 12245666676643 445
Q ss_pred HHHhcc--cCeEecccCccCCCCCChhHHHHHcCC--------------CccCCCCeEEEecCCCC-CHHHHHHHHHHHH
Q 040741 365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV--------------DEDMAHTSIRFGIGRFT-TEAEVDRAIELTV 427 (457)
Q Consensus 365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~--------------~~~~~~~~iRi~~~~~~-t~edid~~~~~l~ 427 (457)
++...| +||.++.+... ....+.+ ..+|. ......+.|||+++..+ |++|||+++++|+
T Consensus 307 ~l~~~L~~~gI~v~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~ 382 (388)
T 1b9h_A 307 ALVDRLVEAGLPAFAAFRA--IYRTDAF--WELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIA 382 (388)
T ss_dssp HHHHHHHHTTCCEEECCCC--GGGSHHH--HHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcccccCc--cccChHh--HhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHH
Confidence 666666 68888776431 1111211 12222 22223468999999999 9999999999999
Q ss_pred HHHHH
Q 040741 428 KQVEK 432 (457)
Q Consensus 428 ~~~~~ 432 (457)
+++++
T Consensus 383 ~~~~~ 387 (388)
T 1b9h_A 383 DAVAR 387 (388)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98764
No 105
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.97 E-value=3.1e-29 Score=245.46 Aligned_cols=280 Identities=15% Similarity=0.146 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCC-CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC
Q 040741 103 VETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKK-RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD 181 (457)
Q Consensus 103 ~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g-~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~ 181 (457)
..++++.+++++|++++++++++|+|++++++++++. ++| ++|++..++|.++...++.. |.+++.++.+.+
T Consensus 60 ~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~----~~g~d~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~ 132 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAETI---GVECRTVPTLDN 132 (356)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTTCEEEECSSSCTHHHHHHHHH---TCEEEECCCCTT
T ss_pred HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh----CCCCCEEEEeCCChHHHHHHHHHc---CCEEEEeeCCCC
Confidence 5689999999999988899999999999999999987 788 99999999999998887766 999999998877
Q ss_pred CCCCHHHHHHhcCCCceEEEEeccccccccccChHH---HHHHHHhcCCcEEEehhhhcCCC--c-ccC-CCCcccEEEe
Q 040741 182 GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE---IGQICKEFKIPFHTDAAQALGKI--P-VDV-EKWNVSLMSL 254 (457)
Q Consensus 182 ~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~---i~~l~~~~~v~li~D~a~~~g~~--~-~~~-~~~~~Di~~~ 254 (457)
+.+|+++++++++ ++++|++++++||+|.+.|.++ |+++|+ +|+++|+|++|+.... . ... ...+.++++.
T Consensus 133 ~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~ 210 (356)
T 1fg7_A 133 WQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILR 210 (356)
T ss_dssp SCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEE
T ss_pred CCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEe
Confidence 7899999999998 8999999999999999998655 455566 8999999999985431 1 122 3345688999
Q ss_pred ccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Q 040741 255 SGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLN 331 (457)
Q Consensus 255 s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~ 331 (457)
|++|.+|++| +|+++++++.++++...... .+.+.....++.++++... +.+++..++++++++++.+
T Consensus 211 s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~---------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 281 (356)
T 1fg7_A 211 TLSKAFALAGLRCGFTLANEEVINLLMKVIAP---------YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIA 281 (356)
T ss_dssp ESSSTTCCGGGCCEEEEECHHHHHHHHHHSCS---------SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHhhcCchhhhEEEEeCHHHHHHHHHhcCC---------CCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999888666 79999987665555433221 1456666665555664321 1267888889999999999
Q ss_pred HHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecc-cCccCCCCCChhHHHHHcCCCccCCCCeEEE
Q 040741 332 GIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSS-GSACTSASLEPSYVLRALGVDEDMAHTSIRF 408 (457)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~-g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi 408 (457)
.|++ ++++....+. ...++.+.++ +..++...| +||.+.+ |..|.. .+++||
T Consensus 282 ~L~~-~~~~~~~~~~---~~~~~~~~~~--~~~~l~~~L~~~gI~v~~~g~~~~~-------------------~~~iRi 336 (356)
T 1fg7_A 282 ALKE-IPCVEQVFDS---ETNYILARFK--ASSAVFKSLWDQGIILRDQNKQPSL-------------------SGCLRI 336 (356)
T ss_dssp HHHH-STTEEEECCC---SSSEEEEEET--THHHHHHHHHHTTEECEECTTSTTC-------------------TTEEEE
T ss_pred HHHh-CCCceEECCC---CCeEEEEECC--CHHHHHHHHHHCCEEEEECCCCCCC-------------------CCeEEE
Confidence 9998 7764333322 1445555554 456666666 6999988 765421 268999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 040741 409 GIGRFTTEAEVDRAIELTVK 428 (457)
Q Consensus 409 ~~~~~~t~edid~~~~~l~~ 428 (457)
+++ +++|+++++++|++
T Consensus 337 s~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 337 TVG---TREESQRVIDALRA 353 (356)
T ss_dssp ECC---CHHHHHHHHHHHHT
T ss_pred EeC---CHHHHHHHHHHHHh
Confidence 997 58999999998875
No 106
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.97 E-value=4.7e-30 Score=252.71 Aligned_cols=342 Identities=15% Similarity=0.105 Sum_probs=236.2
Q ss_pred ecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-h
Q 040741 61 LDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV-M 139 (457)
Q Consensus 61 l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~-~ 139 (457)
++++...+..+++.+++.+.+.... +...+...++++.+++++|.+ ++++++|||+|++++++++ .
T Consensus 9 ~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~~ 75 (374)
T 3uwc_A 9 SYLERQFADIEPYLNDLREFIKTAD-----------FTLGAELEKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLNI 75 (374)
T ss_dssp CCHHHHTSSCHHHHHHHHHHHHHTC-----------CSSCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTC
T ss_pred eccccCCCCchHHHHHHHHHHHcCC-----------cccChhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC
Confidence 4443334333338888888776421 111257889999999999986 5999999999999999998 6
Q ss_pred hhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHH
Q 040741 140 HFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIG 219 (457)
Q Consensus 140 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~ 219 (457)
++|++|+++.++|+++..+++.. |.++++++.+.++.+|++++++++++++++|+ ++||+|.+.|+++|.
T Consensus 76 ----~~gd~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~ 145 (374)
T 3uwc_A 76 ----GAGDEVITCANTFIASVGAIVQA---GATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALA 145 (374)
T ss_dssp ----CTTCEEEEESSSCHHHHHHHHHT---TCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHH
T ss_pred ----CCCCEEEECCCccHHHHHHHHHc---CCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHH
Confidence 89999999999999998877655 99999999987788999999999999988887 778999999999999
Q ss_pred HHHHhcCCcEEEehhhhcCCCcccCCCCc--ccEEEeccc--cccCCC-CceEEEEecC-CCccccccccCCcccccccc
Q 040741 220 QICKEFKIPFHTDAAQALGKIPVDVEKWN--VSLMSLSGH--KIYGPK-GVGALYMRRR-PRIRVEPLINGGGQERGIRS 293 (457)
Q Consensus 220 ~l~~~~~v~li~D~a~~~g~~~~~~~~~~--~Di~~~s~~--K~~g~~-G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 293 (457)
++|++||+++|+|++|+.|.. ++....+ .|++++|+| |++|+. .+|+++.+++ ..+++.....++.... +..
T Consensus 146 ~~~~~~~~~li~D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 223 (374)
T 3uwc_A 146 KIAKKHNLHIVEDACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLINR-DVC 223 (374)
T ss_dssp HHHHHTTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEET-TEE
T ss_pred HHHHHcCCEEEEeCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCcccc-Ccc
Confidence 999999999999999998764 3333333 699999977 977763 3677776653 3333343333221111 111
Q ss_pred --CCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCC-eEEeCCCCCcccceEEEEEccccchHHHhc
Q 040741 294 --GTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDG-VVVNGSMERRYIGNLNLSFAYVEGESLLMG 369 (457)
Q Consensus 294 --~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (457)
.+.+. .+..+.+++.... +.+++..++.+++.+++.+.|.+ +++ +.+...+......+..+.+...+...+...
T Consensus 224 ~~~~~~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (374)
T 3uwc_A 224 VEYGINC-RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVD-LSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQY 301 (374)
T ss_dssp SSCCCBC-BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGG-GTTTEECCCCCTTEECCCSSEEEEETTHHHHHHH
T ss_pred ccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHH
Confidence 01111 1112222333322 34678888999999999999998 777 777644433333333333333356677776
Q ss_pred c--cCeEecccCccCCCCCChhHHHHHcCCCc-------cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 370 L--KEVAVSSGSACTSASLEPSYVLRALGVDE-------DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 370 l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~-------~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
| +||.+.++..... ...| .+..+++.. ....+.|||+++..+|++||++++++|++++++
T Consensus 302 L~~~gi~v~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 302 LKDNGIEVKIHYPIAM-HLQP--AAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp HHHTTBCCBCSCSSCG-GGSG--GGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCccccCCCCcc-ccCh--hhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 6 6888887751100 0011 111122211 112379999999999999999999999998875
No 107
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.97 E-value=5.9e-30 Score=252.16 Aligned_cols=327 Identities=13% Similarity=0.036 Sum_probs=235.9
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChHHHHH
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA--SPKEIIFTSGATESNN 132 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~i~~t~g~T~a~~ 132 (457)
+++|.|..+.+. ++++++.+++.+.+.....++.. ....+..+.+.+.+++.+|. +++++++|+|+|+|++
T Consensus 23 g~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~ 96 (376)
T 3ezs_A 23 KRGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKS------AFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF 96 (376)
T ss_dssp SCCCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCCT------TCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence 366777766655 57899999999887443333221 01124444555555555587 6788999999999999
Q ss_pred HHHHHhhhhhcCC--CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccc
Q 040741 133 VSIKGVMHFYKDK--KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIG 210 (457)
Q Consensus 133 ~al~~~~~~~~~~--g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G 210 (457)
++++++. ++ |++|++..+.|.++...++.. |.+++.++.+.++.+++ ++++++++++++|++++++||+|
T Consensus 97 ~~~~~~~----~~~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~-~l~~~~~~~~~~v~~~~p~nptG 168 (376)
T 3ezs_A 97 NFPSFVL----FDYQNPTIAYPNPFYQIYEGAAKFI---KAKSLLMPLTKENDFTP-SLNEKELQEVDLVILNSPNNPTG 168 (376)
T ss_dssp HHHHHHT----TTCSSCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTSCC-CCCHHHHHHCSEEEECSSCTTTC
T ss_pred HHHHHHc----CCCCCCEEEEecCCcHhHHHHHHHc---CCEEEEcccCCCCCcch-hHHhhhccCCCEEEEcCCCCCcC
Confidence 9999988 78 999999999999988876655 99999999886644555 67777777889999999999999
Q ss_pred cccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCC---------CCcccEEEeccccccCCCC--ceEEEEecC
Q 040741 211 VIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVE---------KWNVSLMSLSGHKIYGPKG--VGALYMRRR 273 (457)
Q Consensus 211 ~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~---------~~~~Di~~~s~~K~~g~~G--~G~l~~~~~ 273 (457)
.+.| +++|+++|++||+++|+|++|+.... +.... ..+.++++.|++|.+|.+| +|+++.+++
T Consensus 169 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 248 (376)
T 3ezs_A 169 RTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSR 248 (376)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHH
Confidence 9988 66777889999999999999986332 22111 3467899999999887554 899998876
Q ss_pred CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741 274 PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN 353 (457)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 353 (457)
..+.+...... ...+.+...+.++.++++. .+.+++..++++++++++.+.|+ ++. . + ....+
T Consensus 249 ~~~~~~~~~~~-------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~----~~~--~-~--~~~~~ 311 (376)
T 3ezs_A 249 LLEKYKAFRAY-------LGYTSANAIQKASEAAWLD-DRHAEFFRNIYANNLKLARKIFK----NTL--I-Y--PYSFY 311 (376)
T ss_dssp HHHHHHHHHTT-------TCCCCCHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHST----TCC--C-C--SBSSE
T ss_pred HHHHHHHHHhh-------hcCCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHhc----CCC--C-C--CcceE
Confidence 66555443321 1235677777776666654 23467777888888888888775 222 1 1 12344
Q ss_pred EEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741 354 LNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 354 ~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~ 430 (457)
+.+.++ +..++...| +||.+.+|..|... ....+++||+++. +++++++++++|++++
T Consensus 312 ~~~~~~--~~~~~~~~l~~~~gi~v~~g~~~~~~---------------~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 372 (376)
T 3ezs_A 312 VYLPVQ--NGENFAKTLYQNEGIITLPALYLGRN---------------RIGADYVRLALVY--DTPLLEKPLEIIETYR 372 (376)
T ss_dssp EEEECS--CHHHHHHHHHHHHCCBCEEGGGGCST---------------TTTTTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred EEEECC--CHHHHHHHHHHhCCEEEeCcHHhCCC---------------CCCCCeEEEEEcC--CHHHHHHHHHHHHHHH
Confidence 444544 456666655 59999999877531 1234899999985 8999999999999988
Q ss_pred HH
Q 040741 431 EK 432 (457)
Q Consensus 431 ~~ 432 (457)
++
T Consensus 373 ~~ 374 (376)
T 3ezs_A 373 EN 374 (376)
T ss_dssp CC
T ss_pred Hh
Confidence 64
No 108
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.97 E-value=3.1e-30 Score=260.03 Aligned_cols=354 Identities=14% Similarity=0.079 Sum_probs=241.5
Q ss_pred CCcE-EecCCCCCCCCHHHHHHHHHHHhhccCC-------CCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcE
Q 040741 56 GRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGN-------PHSRTHLFGWESEVAVETARSQIADLI------GASPKEI 121 (457)
Q Consensus 56 ~~~i-~l~~~~~~~~~~~v~~a~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i 121 (457)
.+.| +|+.+.+.. ++.+.+++.+.+.+...+ +.+..+..+|.......++++.+++++ +++++++
T Consensus 31 ~~~i~~l~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i 109 (444)
T 3if2_A 31 DQPVNMLGGGNPAK-IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENI 109 (444)
T ss_dssp SSCCEECSCCCCCC-CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGE
T ss_pred chhhhccCCCCCCc-ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHE
Confidence 4667 887765554 667777777777665555 421123334443345677888888887 5678899
Q ss_pred EEeCChHHHHHHHHHHhhhhhcCCCC--------------EEEEc-CCCCcchHHHHH---HHHhcCcEEEEEeCCC-CC
Q 040741 122 IFTSGATESNNVSIKGVMHFYKDKKR--------------HVITT-QTEHKCVLDSCR---HLQQEGFEITYLPVGA-DG 182 (457)
Q Consensus 122 ~~t~g~T~a~~~al~~~~~~~~~~g~--------------~vi~~-~~~h~~~~~~~~---~~~~~G~~v~~v~~~~-~~ 182 (457)
+||+|+|+|++++++++. ++|+ +|++. .++|..+...+. .+...|..++.++.+. +|
T Consensus 110 ~~t~G~t~al~~~~~~l~----~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 185 (444)
T 3if2_A 110 ALTNGSQNAFFYLFNLFG----GAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEG 185 (444)
T ss_dssp EEESSHHHHHHHHHHHSS----EEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEE
T ss_pred EEecCcHHHHHHHHHHHh----CCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccC
Confidence 999999999999999987 6776 77775 788888765432 2234478888888774 33
Q ss_pred ----CCCHHHHHHh---cCCCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc-----ccCCCC
Q 040741 183 ----IVNLDELRAA---IRPDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP-----VDVEKW 247 (457)
Q Consensus 183 ----~~d~~~le~~---i~~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~-----~~~~~~ 247 (457)
.+|+++|+++ +++++++|++++++||+|.+.| +++|+++|++||+++|+|++|+.+... ......
T Consensus 186 ~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 265 (444)
T 3if2_A 186 FFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWD 265 (444)
T ss_dssp EEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCC
T ss_pred ccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCC
Confidence 6899999998 7889999999999999999999 888999999999999999999743221 111223
Q ss_pred cccEEEeccccccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHH--HhhHH-HHHHHH
Q 040741 248 NVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK--KEMDY-DHKRIT 323 (457)
Q Consensus 248 ~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~--~~~~~-~~~~~~ 323 (457)
+.++++.|+||..+ +.++|+++++++...++....... ....+.....++..+++... ....+ ..++++
T Consensus 266 ~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 338 (444)
T 3if2_A 266 NNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVV-------NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQ 338 (444)
T ss_dssp TTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHH-------HSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHH
T ss_pred CCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 67899999999622 234899998776555544332211 11334344444433443211 12222 566677
Q ss_pred HHHHHHHHHHhhcCCC--eEEeCCCCCcccceEEEEEc--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741 324 ALHDRLLNGIKEKLDG--VVVNGSMERRYIGNLNLSFA--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV 397 (457)
Q Consensus 324 ~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~ 397 (457)
++.+.+.+.|.+.+++ +.+..+.. +.++.+.++ +.+..++...| +||.+.+|..|......++
T Consensus 339 ~~~~~~~~~l~~~l~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~-------- 407 (444)
T 3if2_A 339 KQATLAVKLLKQALGDYPLMIHKPEG---AIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSD-------- 407 (444)
T ss_dssp HHHHHHHHHHHHHSSSSSEEEECCCB---SSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTT--------
T ss_pred HHHHHHHHHHHHhcccCCceEecCCc---cEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcc--------
Confidence 7778888877664554 55554321 345556665 34667777766 6999999998865321110
Q ss_pred CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741 398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~ 435 (457)
.....++|||+++. ++++|++++++|+++++++..
T Consensus 408 -~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 408 -YQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp -CSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHHT
T ss_pred -cccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHHc
Confidence 01223799999997 899999999999999987753
No 109
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.97 E-value=1.6e-29 Score=252.10 Aligned_cols=331 Identities=16% Similarity=0.155 Sum_probs=240.7
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhc--cCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCC-CcEEEe
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVETARSQIADLIG------ASP-KEIIFT 124 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~-~~i~~t 124 (457)
..+.|+|+.+.+. ++++++.+++.+.+... .+++.. ....++++.++++++ +++ +++++|
T Consensus 22 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~----------~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~ 91 (410)
T 3e2y_A 22 DPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRG----------FGHPALVKALSCLYGKIYQRQIDPNEEILVA 91 (410)
T ss_dssp STTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCT----------TCCHHHHHHHHHHHHHHHTSCCCTTTSEEEE
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCC----------CChHHHHHHHHHHHHHHhCCCCCCCCCEEEe
Confidence 3567999998877 67899999999988642 111111 123455566666654 556 689999
Q ss_pred CChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-----------CCCCCCHHHHHHhc
Q 040741 125 SGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-----------ADGIVNLDELRAAI 193 (457)
Q Consensus 125 ~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-----------~~~~~d~~~le~~i 193 (457)
+|+|+|++++++++. ++|++|++..+.|..+...++.. |.+++.++.+ .++.+|++++++++
T Consensus 92 ~g~~~a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~ 164 (410)
T 3e2y_A 92 VGAYGSLFNSIQGLV----DPGDEVIIMVPFYDCYEPMVRMA---GAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKF 164 (410)
T ss_dssp SHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTC
T ss_pred CCcHHHHHHHHHHhc----CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEeccccccccccccccCCcCCHHHHHhhc
Confidence 999999999999987 89999999999999998877665 9999999876 24468999999999
Q ss_pred CCCceEEEEecccccccccc---ChHHHHHHHHhcCCcEEEehhhhcCC----CcccCC----CCcccEEEeccccccCC
Q 040741 194 RPDTGLISVMAVNNEIGVIQ---PMEEIGQICKEFKIPFHTDAAQALGK----IPVDVE----KWNVSLMSLSGHKIYGP 262 (457)
Q Consensus 194 ~~~t~li~i~~~~~~~G~~~---~l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~~----~~~~Di~~~s~~K~~g~ 262 (457)
++++++|++++++||+|.+. ++++|+++|++||+++|+|++|+... ....+. ..+.++++.|++|.+|+
T Consensus 165 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~ 244 (410)
T 3e2y_A 165 SSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSV 244 (410)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSC
T ss_pred CCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCC
Confidence 99999999999999999996 48899999999999999999997532 111111 22456889999998775
Q ss_pred CC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHH
Q 040741 263 KG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-------AKKEMDYDHKRITALHDRLLNGI 333 (457)
Q Consensus 263 ~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-------~~~~~~~~~~~~~~~~~~l~~~l 333 (457)
+| +|+++++++.+..+...... ...+.+.....++..+++. ....+++..++++++++++.+.|
T Consensus 245 ~G~r~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 317 (410)
T 3e2y_A 245 TGWKLGWSIGPAHLIKHLQTVQQN-------SFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLL 317 (410)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHT-------TTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEECHHHHHHHHHHHHh-------hccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 89999987765555433321 1235566666666666653 12347788889999999999999
Q ss_pred hhcCCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCC
Q 040741 334 KEKLDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVD 398 (457)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~ 398 (457)
++ + ++.+..+.. ..++.+.+.... ..++...+ +||.+.+|..|.....
T Consensus 318 ~~-~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~------------ 380 (410)
T 3e2y_A 318 NS-V-GLKPIVPDG---GYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKS------------ 380 (410)
T ss_dssp HT-T-TCEEEBCSB---SSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTT------------
T ss_pred HH-C-CCeecCCCc---cEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCC------------
Confidence 98 5 777665322 334444443211 12444433 5999999987754210
Q ss_pred ccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741 399 EDMAHTSIRFGIGRFTTEAEVDRAIELTVK 428 (457)
Q Consensus 399 ~~~~~~~iRi~~~~~~t~edid~~~~~l~~ 428 (457)
.+...++|||+++. +++++++++++|++
T Consensus 381 ~~~~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 381 KPHFEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 01234899999876 89999999999875
No 110
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.97 E-value=2.4e-30 Score=256.57 Aligned_cols=307 Identities=13% Similarity=0.081 Sum_probs=224.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCc
Q 040741 93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGF 171 (457)
Q Consensus 93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~ 171 (457)
|.+++...+...++++.+++++|.+ +.++++|||+|++++++ +. ++|++|+++.+.|.+....+. .++..|+
T Consensus 47 ~~~~~~~~~~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~ 119 (393)
T 1n8p_A 47 YEYSRSQNPNRENLERAVAALENAQ--YGLAFSSGSATTATILQ-SL----PQGSHAVSIGDVYGGTHRYFTKVANAHGV 119 (393)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-TS----CSSCEEEEESSCCHHHHHHHHHTSTTTCS
T ss_pred cceecCCChhHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-Hc----CCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence 3344444467899999999999986 46666777999999999 77 789999999999988776553 3456699
Q ss_pred EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhc----CCcEEEehhhhcCCCcccCCCC
Q 040741 172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEF----KIPFHTDAAQALGKIPVDVEKW 247 (457)
Q Consensus 172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~----~v~li~D~a~~~g~~~~~~~~~ 247 (457)
++++++.+ | +++++++++++++|++++++||+|.+.|+++|.++|+++ |+++|+|++|+.+... ++..+
T Consensus 120 ~v~~v~~~-----d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~~~~~ 192 (393)
T 1n8p_A 120 ETSFTNDL-----L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NPLNF 192 (393)
T ss_dssp CCEEESSH-----H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CGGGG
T ss_pred EEEEeCCC-----h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-CHHHc
Confidence 99999876 7 899999999999999999999999999999999999999 9999999999876542 34445
Q ss_pred cccEEEeccccccCCCC--c-eEEEEe-cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHH
Q 040741 248 NVSLMSLSGHKIYGPKG--V-GALYMR-RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRIT 323 (457)
Q Consensus 248 ~~Di~~~s~~K~~g~~G--~-G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~ 323 (457)
++|++++|+||++|+.| + |+++++ ++..+++...... ..++.++....++..+++ .+....++..
T Consensus 193 ~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~l~----~~~~~~~~~~ 261 (393)
T 1n8p_A 193 GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA-------IGAIPSPFDAWLTHRGLK----TLHLRVRQAA 261 (393)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHHT----THHHHHHHHH
T ss_pred CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhccc----hHHHHHHHHH
Confidence 79999999999999887 6 888885 4444444433211 112334333333333332 3456667777
Q ss_pred HHHHHHHHHHhhcCCC-eE-EeCCC-----C--------Cc-c-cceEEEEEccc--cchHHHhcc--cCeEecccCccC
Q 040741 324 ALHDRLLNGIKEKLDG-VV-VNGSM-----E--------RR-Y-IGNLNLSFAYV--EGESLLMGL--KEVAVSSGSACT 382 (457)
Q Consensus 324 ~~~~~l~~~l~~~~~~-~~-~~~~~-----~--------~~-~-~~~~~~~~~~~--~~~~~~~~l--~~i~~~~g~~~~ 382 (457)
++.+++.+.|.+ .+. +. +.-+. . .. . ++++.+.+++. +...++..+ .+++++.|++|+
T Consensus 262 ~~~~~l~~~L~~-~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~~~s 340 (393)
T 1n8p_A 262 LSANKIAEFLAA-DKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIES 340 (393)
T ss_dssp HHHHHHHHHHTS-CTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSC
T ss_pred HHHHHHHHHHHh-CCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCCCcc
Confidence 788888888888 665 43 21110 0 11 3 67788888653 345566665 477888888887
Q ss_pred CCCC--ChhH------HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741 383 SASL--EPSY------VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ 429 (457)
Q Consensus 383 ~~~~--~~~~------~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~ 429 (457)
.... .+++ ++.++|++ .+.|||+++..+++++|+.+.++|++.
T Consensus 341 ~~~~p~~~~h~~~~~~~~~~~g~~----~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 341 LLEVPAVMTHGGIPKEAREASGVF----DDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp EEECTTTTTSCSSCTTTTTTTSCC----TTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eeeccccccccccCHHHHHhcCCC----CCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 4322 2332 45666765 389999999999999999999888764
No 111
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.97 E-value=1.5e-28 Score=250.57 Aligned_cols=347 Identities=14% Similarity=0.099 Sum_probs=240.6
Q ss_pred CcEEecCCCCCCCCHH-HHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC---------CcEEEeCC
Q 040741 57 RPLYLDMQATTPVDPR-VLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP---------KEIIFTSG 126 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~-v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~---------~~i~~t~g 126 (457)
.+.|+++-.+++.++. +.+++..++ |+....+..+........++++++++++|++. .+++||+|
T Consensus 73 ~p~~~~~~~~~~~~~~~~~~~~~~~~-----n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~g 147 (486)
T 1js3_A 73 SPYFFAYFPTASSYPAMLADMLCGAI-----GCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGS 147 (486)
T ss_dssp STTBCSSSCCCCCHHHHHHHHHHHHH-----CCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESC
T ss_pred CCCceEeCCCCCCHHHHHHHHHHHHh-----CcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCC
Confidence 4567877555544443 555555554 23322334444455666678889999999974 35899999
Q ss_pred hHHHHHHHHHHhhhhhcC-----CC---------C-EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHH
Q 040741 127 ATESNNVSIKGVMHFYKD-----KK---------R-HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRA 191 (457)
Q Consensus 127 ~T~a~~~al~~~~~~~~~-----~g---------~-~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~ 191 (457)
||+|+.+++.++.....+ .| + .|+++...|+++..+++.+ |++++.++++.++.+|+++|++
T Consensus 148 gTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~---G~~v~~v~~d~~~~~d~~~L~~ 224 (486)
T 1js3_A 148 ASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG---GVKLKAIPSDGKFAMRASALQE 224 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhC---CCceEEeecCCCCCCCHHHHHH
Confidence 999999999887532101 02 2 4788999999999998888 9999999998889999999999
Q ss_pred hcCCCce------EEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-CCC-----CcccEEEeccccc
Q 040741 192 AIRPDTG------LISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-VEK-----WNVSLMSLSGHKI 259 (457)
Q Consensus 192 ~i~~~t~------li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-~~~-----~~~Di~~~s~~K~ 259 (457)
+|+++++ +|++++++|++|.+.|+++|+++|++||+++|+|+||+.+....+ ... .++|++++++||+
T Consensus 225 ~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~ 304 (486)
T 1js3_A 225 ALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKW 304 (486)
T ss_dssp HHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHH
T ss_pred HHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhh
Confidence 9987663 889999999999999999999999999999999999997754321 211 2689999999995
Q ss_pred cC-CCCceEEEEecCC--Ccccc---ccccCCcc----ccccc----cCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHH
Q 040741 260 YG-PKGVGALYMRRRP--RIRVE---PLINGGGQ----ERGIR----SGTLPTPLIVGFGSACEIA-KKEMDYDHKRITA 324 (457)
Q Consensus 260 ~g-~~G~G~l~~~~~~--~~~~~---~~~~~~~~----~~~~~----~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~ 324 (457)
++ |.|+|+++++++. .+.+. .+..+.+. ..+.. ..+... ...++..++... .++++++.++..+
T Consensus 305 ~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~-~~~~~~~al~~~g~~g~~~~~~~~~~ 383 (486)
T 1js3_A 305 LLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRF-RSLKMWFVFRMYGVKGLQAYIRKHVQ 383 (486)
T ss_dssp SSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCC-THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCch-hHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 54 7789999998652 22221 11211111 00000 001111 233444455543 4568899999999
Q ss_pred HHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc--chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741 325 LHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE--GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDED 400 (457)
Q Consensus 325 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~ 400 (457)
+++++.+.|.+ +|+++++.++. .+++.|.+...+ ..++...| +|+.+..+.. +
T Consensus 384 ~a~~l~~~L~~-~~~~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~--------------~----- 440 (486)
T 1js3_A 384 LSHEFEAFVLQ-DPRFEVCAEVT---LGLVCFRLKGSDGLNEALLERINSARKIHLVPCR--------------L----- 440 (486)
T ss_dssp HHHHHHHHHHH-CTTEEECSCCC---SSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEE--------------E-----
T ss_pred HHHHHHHHHhc-CCCeEEeCCCc---eeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEE--------------E-----
Confidence 99999999999 89999976432 556667765322 24555555 4543322210 0
Q ss_pred CCCCeEEEec-CCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741 401 MAHTSIRFGI-GRFTTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 401 ~~~~~iRi~~-~~~~t~edid~~~~~l~~~~~~~~~ 435 (457)
.....+||++ ...++++||++++++|+++++++.+
T Consensus 441 ~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~ 476 (486)
T 1js3_A 441 RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLA 476 (486)
T ss_dssp TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1237999997 5568999999999999999988754
No 112
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.97 E-value=9.1e-30 Score=248.64 Aligned_cols=326 Identities=14% Similarity=0.175 Sum_probs=229.4
Q ss_pred CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741 56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI 135 (457)
Q Consensus 56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al 135 (457)
..+|+|+.+.+.++++++++++.+.... . .. .+...+...++++++++++| .+.++++++|||+|+.+++
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~---~----~~--~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al 76 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSSG---Q----AG--PYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCL 76 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTSS---C----CC--STTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHH
T ss_pred CceEeeccCCccCCCHHHHHHHHhhccC---c----cc--ccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHH
Confidence 3567888777778899999999987531 0 11 12223678899999999999 4446999999999999999
Q ss_pred HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhc--CcEEEEEeCCCCCCCCHHHHHH-hcCC-------CceEEEEecc
Q 040741 136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQE--GFEITYLPVGADGIVNLDELRA-AIRP-------DTGLISVMAV 205 (457)
Q Consensus 136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~--G~~v~~v~~~~~~~~d~~~le~-~i~~-------~t~li~i~~~ 205 (457)
+++. ++|++|+++.++|.+..... .+... |.+++.++.+ ++.+|++++++ ++++ ++++|+++++
T Consensus 77 ~~~~----~~gd~vi~~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~ 150 (356)
T 1v72_A 77 SAMT----PPWGNIYCHPASHINNDECG-APEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQA 150 (356)
T ss_dssp HTSC----CTTEEEEECTTSHHHHSSTT-HHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESS
T ss_pred HHhc----CCCCEEEEcCccchhhhhch-HHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcC
Confidence 9887 79999999999998776541 12233 8899988875 46799999999 9986 6899999998
Q ss_pred ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC-----CcccCC--CCcccEEEeccccccCCCCceEEEEecCCC
Q 040741 206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK-----IPVDVE--KWNVSLMSLSGHKIYGPKGVGALYMRRRPR 275 (457)
Q Consensus 206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~-----~~~~~~--~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~ 275 (457)
+| +|.+.| +++|.++|++||+++|+|++|+.+. ...... ..+.|++++|+||.++|.|+|+++++++..
T Consensus 151 ~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~g~~~G~g~~~~~~~~~ 229 (356)
T 1v72_A 151 TE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLA 229 (356)
T ss_dssp CT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGGH
T ss_pred CC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccCCCcCccEEEEECHHHH
Confidence 76 999554 8899999999999999999986421 111111 135789999999985566667888877665
Q ss_pred ccccccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741 276 IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL 354 (457)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 354 (457)
+++...... .+........++..+++.+.+ .+.+..++.+++++++.+.|.+ ++++.+..+.. ..++
T Consensus 230 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~---~~~~ 297 (356)
T 1v72_A 230 TEMSYRRKR--------AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLGGTE---ANIL 297 (356)
T ss_dssp HHHHHHHHH--------TTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEESCCC---SSEE
T ss_pred hhHHHHhhc--------cCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-CCCcEEccCCC---ccEE
Confidence 554432211 111111112222223333333 2456677888999999999998 88998865422 3444
Q ss_pred EEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 355 NLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 355 ~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
.+.++ .++...| +||.+.+|.+ + .+++||+++..++++|+++++++|++++++
T Consensus 298 ~~~~~----~~~~~~l~~~gi~v~~g~~---------------~------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 298 FCRLD----SAMIDALLKAGFGFYHDRW---------------G------PNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp EEEEC----HHHHHHHHHTTCBCBCSSS---------------S------TTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred EEEcC----HHHHHHHHhcCeEEecccc---------------C------CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 44443 2555555 6888876541 1 279999999989999999999999998876
Q ss_pred HHh
Q 040741 433 LRE 435 (457)
Q Consensus 433 ~~~ 435 (457)
..+
T Consensus 353 ~~~ 355 (356)
T 1v72_A 353 TQE 355 (356)
T ss_dssp ---
T ss_pred hcc
Confidence 543
No 113
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.97 E-value=1.5e-29 Score=250.87 Aligned_cols=306 Identities=16% Similarity=0.099 Sum_probs=221.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCc
Q 040741 93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGF 171 (457)
Q Consensus 93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~ 171 (457)
|.|++...+...++++.+++++|.+ ++++++|||+|++++++++. ++|++|+++.+.|+++...+. .++..|+
T Consensus 58 ~~y~r~~~~~~~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~ 131 (392)
T 3qhx_A 58 YEYARTGNPTRTALEAALAAVEDAA--FGRAFSSGMAAADCALRAML----RPGDHVVIPDDAYGGTFRLIDKVFTGWNV 131 (392)
T ss_dssp BCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHTGGGGTC
T ss_pred ccccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCcchHHHHHHHHHHhcCc
Confidence 4445445578899999999999986 59999999999999999887 899999999999998877764 3356699
Q ss_pred EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741 172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL 251 (457)
Q Consensus 172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di 251 (457)
++++++.+ |++++++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+.. ......++|+
T Consensus 132 ~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-~~~~~~~~di 205 (392)
T 3qhx_A 132 EYTPVALA-----DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-QQPLSLGADV 205 (392)
T ss_dssp EEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-CCGGGGTCSE
T ss_pred EEEEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-CChHHhCCcE
Confidence 99999876 89999999999999999999999999999999999999999999999999986632 2333557899
Q ss_pred EEeccccccCCCC---ceEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741 252 MSLSGHKIYGPKG---VGALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD 327 (457)
Q Consensus 252 ~~~s~~K~~g~~G---~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~ 327 (457)
++.|++|++|+.| +|+++.++ +...++...... .....++.....+...+ +.+....++..++++
T Consensus 206 ~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~l----~~l~~~~~~~~~~~~ 274 (392)
T 3qhx_A 206 VLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNG-------AGAVPGPFDAYLTMRGL----KTLVLRMQRHSENAA 274 (392)
T ss_dssp EEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHH----TTHHHHHHHHHHHHH
T ss_pred EEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhh----hHHHHHHHHHHHHHH
Confidence 9999999887665 79988874 333333322211 11233433333332222 234566777888888
Q ss_pred HHHHHHhhcCCCeEEeCCCC--------------CcccceEEEEEcc--ccchHHHhcc--cCeEecccCccCC----CC
Q 040741 328 RLLNGIKEKLDGVVVNGSME--------------RRYIGNLNLSFAY--VEGESLLMGL--KEVAVSSGSACTS----AS 385 (457)
Q Consensus 328 ~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~~~~~~~l--~~i~~~~g~~~~~----~~ 385 (457)
++.+.|++ .|.+..+..+. ...++++.+.+++ .....++..+ .+++++.|+.|+. ..
T Consensus 275 ~l~~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~ 353 (392)
T 3qhx_A 275 AVAEFLAE-HPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSA 353 (392)
T ss_dssp HHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSCEEECGGG
T ss_pred HHHHHHhc-CCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCceeeCccc
Confidence 99999988 78774432211 2236778888875 3456667666 5788888888653 22
Q ss_pred CChhHHHH-HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741 386 LEPSYVLR-ALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT 426 (457)
Q Consensus 386 ~~~~~~l~-~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l 426 (457)
..+..+.. ..| ...+.|||+++..+++++|+.+.++|
T Consensus 354 ~~~~~~~~~~~g----~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 354 MTHASTAGSQLE----VPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp TSCGGGBTTBCC----CCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred ccccccCHHHcC----CCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 22211111 122 23589999999876666666666554
No 114
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.97 E-value=3.1e-30 Score=256.68 Aligned_cols=343 Identities=16% Similarity=0.157 Sum_probs=244.4
Q ss_pred EecCCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHH
Q 040741 60 YLDMQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKG 137 (457)
Q Consensus 60 ~l~~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~ 137 (457)
++++.+.++.++++++++.+.+.+.+ ++|.++.+.......+..+.+++++++++|++++ .+++++||+|+.+++++
T Consensus 26 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~-~i~~~sGt~a~~~a~~~ 104 (405)
T 2vi8_A 26 IELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA-NVQPHSGAQANMAVYFT 104 (405)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCSSHHHHHHHHHHH
T ss_pred eeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce-EEEecCcHHHHHHHHHH
Confidence 66777778889999999999886433 3333321111122334444578899999998753 44455669999999999
Q ss_pred hhhhhcCCCCEEEEcCCCCcchHHHH---HHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCC-CceEEEEeccccccccc
Q 040741 138 VMHFYKDKKRHVITTQTEHKCVLDSC---RHLQQEGFEITYLPVG-ADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVI 212 (457)
Q Consensus 138 ~~~~~~~~g~~vi~~~~~h~~~~~~~---~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~ 212 (457)
+. ++|++|+++.++|+++.... ...+ .+.+++.++++ .++.+|++++++++++ ++++|+++.. + .|..
T Consensus 105 ~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~-~-~~~~ 177 (405)
T 2vi8_A 105 VL----EHGDTVLGMNLSHGGHLTHGSPVNFSG-VQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAA-A-YPRI 177 (405)
T ss_dssp HC----CTTCEEEEECGGGTCCTTTTCTTSHHH-HHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCS-S-CCSC
T ss_pred hc----CCCCEEEEecccccchhcccchhhhcc-ceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEeCC-C-CCcc
Confidence 87 89999999999998875311 1221 13477888775 5678999999999986 7888877433 3 4677
Q ss_pred cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCC---cccEEEeccccccC-CCCceEEEEecCCCccccccccCCccc
Q 040741 213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKW---NVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQE 288 (457)
Q Consensus 213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~---~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~ 288 (457)
.++++|.++|++||+++|+|++|+.|..+.+.... .+|++++|+||++| +.| |+++++++..+++.+....
T Consensus 178 ~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~~~~---- 252 (405)
T 2vi8_A 178 IDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIFP---- 252 (405)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHTT----
T ss_pred CCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHHHHhhhcc----
Confidence 78999999999999999999999865332222211 57999999999765 888 9999987665555443322
Q ss_pred cccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc--ccchH
Q 040741 289 RGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY--VEGES 365 (457)
Q Consensus 289 ~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 365 (457)
+..+++++..++++.++++... .++++..++.+++++++.+.|.+ + ++.+..+.. ...++.+.++. .+...
T Consensus 253 --~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~ 326 (405)
T 2vi8_A 253 --GIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN-E-GFTLVSGGT--DNHLLLVDLRPQQLTGKT 326 (405)
T ss_dssp --TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC--SSSEEEEECGGGTCCHHH
T ss_pred --cccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-C-CCeEecCCC--CceEEEEEccCCCCCHHH
Confidence 2235677778888878888765 46889999999999999999999 6 888875422 24555566652 34556
Q ss_pred HHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC----CCCHHHHHHHHHHHHHHHHHHH
Q 040741 366 LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR----FTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 366 ~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~----~~t~edid~~~~~l~~~~~~~~ 434 (457)
+...| +||.+.+|..+.. .......+.+||+++. .++++|+++++++|++++++++
T Consensus 327 ~~~~l~~~gi~v~~g~~~~~-------------~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 327 AEKVLDEVGITVNKNTIPYD-------------PESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp HHHHHHHHTEECEEECCTTC-------------SSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHcCceeccCcCccc-------------cCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 66666 6999988764210 0001123689999986 4679999999999999987654
No 115
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.97 E-value=4.2e-29 Score=252.19 Aligned_cols=338 Identities=17% Similarity=0.162 Sum_probs=242.1
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CCCCCcEEEeCChHH
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GASPKEIIFTSGATE 129 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~~~i~~t~g~T~ 129 (457)
+.+.|+|..+.+. +.++++.+++.+.+.....++. .+.|+ ......++++.+++++ +++++++++|+|+++
T Consensus 68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~--~~~y~--~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~ 143 (449)
T 3qgu_A 68 DAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREG--YSGYG--AEQGQGALREAVASTFYGHAGRAADEIFISDGSKC 143 (449)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCC--CCCST--TTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHH
T ss_pred CCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccC--CCCCC--CCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHH
Confidence 4568888887666 6889999999999875432111 11222 2234678899999998 778889999999999
Q ss_pred HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcE----------EEEEeCCCCC--CCCHHHHHHhcCCCc
Q 040741 130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE----------ITYLPVGADG--IVNLDELRAAIRPDT 197 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~----------v~~v~~~~~~--~~d~~~le~~i~~~t 197 (457)
++.++ .++. ++||+|+++.+.|.++...++.. |.+ ++.++.+.++ ..|++++ +++
T Consensus 144 al~~~-~~l~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 210 (449)
T 3qgu_A 144 DIARI-QMMF----GSKPTVAVQDPSYPVYVDTSVMM---GMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRT 210 (449)
T ss_dssp HHHHH-HHHH----CSSSCEEEEESCCTHHHHHHHHH---TCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CCC
T ss_pred HHHHH-HHHh----CCCCEEEEcCCCChhHHHHHHHc---CCcccccccccceeEEEecccccCCcCChhHc-----CCC
Confidence 99998 7777 89999999999999999888877 877 9999987543 3344321 678
Q ss_pred eEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----CcccCCC----CcccEEEeccccccCCCC--
Q 040741 198 GLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----IPVDVEK----WNVSLMSLSGHKIYGPKG-- 264 (457)
Q Consensus 198 ~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~~~----~~~Di~~~s~~K~~g~~G-- 264 (457)
++|++++++||+|.+.+ +++|+++|++||+++|+|++|+... .+..+.. .+.++++.|++|.+|..|
T Consensus 211 ~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r 290 (449)
T 3qgu_A 211 DIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVR 290 (449)
T ss_dssp SEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCC
T ss_pred CEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccce
Confidence 89999999999999987 7788889999999999999998632 2222221 256799999999887554
Q ss_pred ceEEEEecCCCcc-ccccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEE
Q 040741 265 VGALYMRRRPRIR-VEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVV 342 (457)
Q Consensus 265 ~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 342 (457)
+|+++++++.++. .................+.+.....++.++++. ..+.+++..++++++++++.+.|++ + ++.+
T Consensus 291 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~ 368 (449)
T 3qgu_A 291 LGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTE-M-GFSV 368 (449)
T ss_dssp CEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCE
T ss_pred eEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCee
Confidence 8999998876553 000000000001112235666666666666654 3345788899999999999999999 5 6766
Q ss_pred eCCCCCcccceEEEEEccccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741 343 NGSMERRYIGNLNLSFAYVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV 419 (457)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi 419 (457)
..+.. ..++.+.+++.+..++...| + ||.+.+|..|.+ ...++|||++.. ++++|
T Consensus 369 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~-----------------~~~~~iRis~~~--~~e~i 426 (449)
T 3qgu_A 369 YGGDD---APYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGP-----------------AGEGFVRASAFG--SRENI 426 (449)
T ss_dssp EESSS---SSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHH
T ss_pred eCCCC---eeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCC-----------------CCCCeEEEEecC--CHHHH
Confidence 65322 34455555545566776655 3 999999887643 123899999654 89999
Q ss_pred HHHHHHHHHHHHHH
Q 040741 420 DRAIELTVKQVEKL 433 (457)
Q Consensus 420 d~~~~~l~~~~~~~ 433 (457)
++++++|++++++.
T Consensus 427 ~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 427 LEAVRRFKEAYGKR 440 (449)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987643
No 116
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.97 E-value=9.6e-29 Score=248.76 Aligned_cols=300 Identities=15% Similarity=0.127 Sum_probs=222.0
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEE
Q 040741 96 GWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEIT 174 (457)
Q Consensus 96 ~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~ 174 (457)
.....+...++++++++++|++++++++++|+|.+++.++.++.. ++|++|+++.++|+++..+++. ++..|++++
T Consensus 103 ~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~---~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~ 179 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRE---TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL 179 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHH---HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhc---CCCCEEEEcCccCHhHHHHHHHHHHHCCCEEE
Confidence 345567899999999999999877789999999655555554432 6899999999999999988764 355699999
Q ss_pred EEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehh-hhcCCCcccCCCCcccEEE
Q 040741 175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAA-QALGKIPVDVEKWNVSLMS 253 (457)
Q Consensus 175 ~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a-~~~g~~~~~~~~~~~Di~~ 253 (457)
.++. .++.+|+++ |+++|++|+++++ |++|.+.|+++|.++|+++|+++|+|.. +++|..... ..+++|+++
T Consensus 180 ~v~~-~~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~-~~~g~D~~~ 252 (438)
T 1wyu_A 180 TLPL-EGGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPP-GAYGADIAV 252 (438)
T ss_dssp EECC-BTTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCH-HHHTCSEEE
T ss_pred EEcC-cCCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCC-ccCCCCEEE
Confidence 9997 467788776 7889999999998 9999999999999999999999997754 556654333 345789999
Q ss_pred ecccc-----c-cCCCCceEEEEecCCCccccccccCCc-----------------cccccccCCCCh---hHHHHHHHH
Q 040741 254 LSGHK-----I-YGPKGVGALYMRRRPRIRVEPLINGGG-----------------QERGIRSGTLPT---PLIVGFGSA 307 (457)
Q Consensus 254 ~s~~K-----~-~g~~G~G~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~t~~~---~~~~al~~a 307 (457)
+|.+| + +|| |+|+++++++..+++.....|+. +..+...+++++ ..+.++.++
T Consensus 253 ~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa 331 (438)
T 1wyu_A 253 GDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGA 331 (438)
T ss_dssp EECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHH
T ss_pred ECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHH
Confidence 99766 2 345 79999999887666544332211 001223456665 455555444
Q ss_pred --HHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEe--cccCc
Q 040741 308 --CEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAV--SSGSA 380 (457)
Q Consensus 308 --l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~--~~g~~ 380 (457)
+.... ++++++.++..++++++.+.|++ ++++++..+. .....+.+.+. .+..++...| +||.+ .++.+
T Consensus 332 ~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~--~~~~~~~~~~~-~~~~~~~~~L~~~gi~v~~~~~~~ 407 (438)
T 1wyu_A 332 MYLAALGPEGLREVALKSVEMAHKLHALLLE-VPGVRPFTPK--PFFNEFALALP-KDPEAVRRALAERGFHGATPVPRE 407 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTCEECSCS--SBCSEEEEECS-SCHHHHHHHHHHTTCCCCEECCTT
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEECCCC--CeEEEEEEeCC-CCHHHHHHHHHHCCceeccccccc
Confidence 44443 35888999999999999999999 8899987642 22333334433 3456676666 57776 44443
Q ss_pred cCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741 381 CTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 381 ~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~ 430 (457)
|. .+.|||++..++|++|+++++++|++++
T Consensus 408 ~~--------------------~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 408 YG--------------------ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp SC--------------------SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred cC--------------------CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 21 3799999999999999999999998763
No 117
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.97 E-value=9.3e-30 Score=250.73 Aligned_cols=294 Identities=17% Similarity=0.179 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHHh-CCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741 102 AVETARSQIADLI-GASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA 180 (457)
Q Consensus 102 ~~~~~~~~la~~~-g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~ 180 (457)
...++++.+++++ +++++++++++|||+|+.++++++. ++||+|++..+.|.++...++.. |.+++.++.+.
T Consensus 64 g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~ 136 (375)
T 3op7_A 64 GSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI----EPGDHVISLYPTYQQLYDIPKSL---GAEVDLWQIEE 136 (375)
T ss_dssp CCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESSCTHHHHHHHHT---TCEEEEEEEEG
T ss_pred ChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEeccc
Confidence 3568999999988 5677889999999999999999998 89999999999999988776655 99999998873
Q ss_pred --CCCCCHHHHHHhcCCCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc---ccCCCCcccEE
Q 040741 181 --DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP---VDVEKWNVSLM 252 (457)
Q Consensus 181 --~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~---~~~~~~~~Di~ 252 (457)
++.+|++++++++++++++|++++++||+|.+.| +++|.++|++||+++|+|++|+..... .-....+.+++
T Consensus 137 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~ 216 (375)
T 3op7_A 137 ENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIA 216 (375)
T ss_dssp GGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEE
T ss_pred cCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEE
Confidence 3458999999999999999999999999999999 999999999999999999999864332 11112345688
Q ss_pred EeccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040741 253 SLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLL 330 (457)
Q Consensus 253 ~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~ 330 (457)
+.|++|.+|.+| +|+++++++..+++......+ ..+.+.....++..+++.....+++..++++++++++.
T Consensus 217 ~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 289 (375)
T 3op7_A 217 VNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYT-------MICAGVFDDLVAQLALAHYQEILERNRHILEENLAILD 289 (375)
T ss_dssp EEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGT-------TSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred EeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhh-------ccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 999999877544 699999776666555433221 12445555665656666555557788888899999999
Q ss_pred HHHhhcCCCeEEeCCCCCcccceEEEEEc-cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741 331 NGIKEKLDGVVVNGSMERRYIGNLNLSFA-YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI 406 (457)
Q Consensus 331 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i 406 (457)
+.|++ .+++.+..+.. ...+.+.++ ..+..++...+ +||.+.+|..|.. .+++
T Consensus 290 ~~l~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~i 346 (375)
T 3op7_A 290 QWIEE-EPLVSYIRPAV---VSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFER-------------------DGYV 346 (375)
T ss_dssp HHHHH-CTTEEECCCSS---SSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEE
T ss_pred HHHhh-CCCceEecCCC---eEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCC-------------------CCeE
Confidence 99999 88888765322 222334443 23455665554 5999998875532 2799
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 407 RFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 407 Ri~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
||+++. +.+++++++++|++++++++
T Consensus 347 Ri~~~~--~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 347 RLGFAC--EQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp EECCCS--CHHHHHHHHHHHHHHHGGGC
T ss_pred EEEecC--CHHHHHHHHHHHHHHHHHHh
Confidence 999876 45999999999999987653
No 118
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-29 Score=253.05 Aligned_cols=333 Identities=14% Similarity=0.134 Sum_probs=239.9
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCh
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSGA 127 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g~ 127 (457)
..+.|.|..+.+. +.++.+.+++.+.+... + .+.|+. .....++++.+++++ | ++++++++|+||
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~-~-----~~~Y~~--~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~ 127 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDIP-M-----VNQYSP--TRGRPSLINSLIKLYSPIYNTELKAENVTVTTGA 127 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTSG-G-----GGSCCC--TTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhCc-C-----CCCCCC--CCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCH
Confidence 3466777766554 56799999999987641 0 011111 012345556666654 5 355689999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC------------CCCCCHHHHHHhcCC
Q 040741 128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA------------DGIVNLDELRAAIRP 195 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~------------~~~~d~~~le~~i~~ 195 (457)
++|+.++++++. ++|++|++..+.|.++...++.. |.+++.++.+. ++.+|+++|++++++
T Consensus 128 ~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 200 (447)
T 3b46_A 128 NEGILSCLMGLL----NAGDEVIVFEPFFDQYIPNIELC---GGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS 200 (447)
T ss_dssp HHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT
T ss_pred HHHHHHHHHHHc----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc
Confidence 999999999987 89999999999999998877655 99999998753 357899999999999
Q ss_pred CceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCC-----CCcccEEEeccccccCCCC
Q 040741 196 DTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVE-----KWNVSLMSLSGHKIYGPKG 264 (457)
Q Consensus 196 ~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~-----~~~~Di~~~s~~K~~g~~G 264 (457)
++++|++++++||+|.+.+ +++|+++|++||+++|+|++|+.... ...+. ..+.|+++.|++|.+|.+|
T Consensus 201 ~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 280 (447)
T 3b46_A 201 KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG 280 (447)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT
T ss_pred CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc
Confidence 9999999999999999975 88999999999999999999985322 11111 2367899999999888666
Q ss_pred --ceEEEE-ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 040741 265 --VGALYM-RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA--KKEMDYDHKRITALHDRLLNGIKEKLDG 339 (457)
Q Consensus 265 --~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 339 (457)
+|++++ +++.++.+..... ....+.+.....++.++++.. ...+++..++++++++++.+.|.+ + +
T Consensus 281 ~riG~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g 351 (447)
T 3b46_A 281 WRIGWVLSLNAELLSYAAKAHT-------RICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDE-L-G 351 (447)
T ss_dssp SCCEEEECSCHHHHHHHHHHHH-------HHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-H-T
T ss_pred hhhEEEEeCCHHHHHHHHHHHh-------hccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHH-C-C
Confidence 999999 7665555443221 112255666677777777765 334788899999999999999998 4 6
Q ss_pred eEEeCCCCCcccceEEEEEccc----------------cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741 340 VVVNGSMERRYIGNLNLSFAYV----------------EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDED 400 (457)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~ 400 (457)
+.+..+. . +.++.+.++.. +..++...| +||.+.+|..|..... ..
T Consensus 352 ~~~~~~~-~--g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~------------~~ 416 (447)
T 3b46_A 352 LPYTAPE-G--TYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEH------------EK 416 (447)
T ss_dssp CCEECCS-B--SSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGG------------GG
T ss_pred CeecCCC-e--eEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCc------------cC
Confidence 6665432 1 33444555432 234565544 5999998876543100 01
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741 401 MAHTSIRFGIGRFTTEAEVDRAIELTVK 428 (457)
Q Consensus 401 ~~~~~iRi~~~~~~t~edid~~~~~l~~ 428 (457)
...++|||++.. ++++|++++++|++
T Consensus 417 ~~~~~iRls~~~--~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 417 AAENLLRFAVCK--DDAYLENAVERLKL 442 (447)
T ss_dssp GGTTEEEEECCS--CHHHHHHHHHHGGG
T ss_pred CCCCEEEEEEeC--CHHHHHHHHHHHHH
Confidence 124799999985 79999999998876
No 119
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=3.6e-29 Score=248.86 Aligned_cols=323 Identities=17% Similarity=0.128 Sum_probs=232.2
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCE
Q 040741 69 VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRH 148 (457)
Q Consensus 69 ~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~ 148 (457)
.+|++.+++.+.+.....+++. +...+...+...++++.+++++|. ++++++++|++ ++..++..+... .+|++
T Consensus 61 ~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~-~~~i~~~sG~~-a~~~~~~~l~~~--~~gd~ 134 (401)
T 2bwn_A 61 QHPVVLAAMHEALEAVGAGSGG--TRNISGTTAYHRRLEAEIAGLHQK-EAALVFSSAYN-ANDATLSTLRVL--FPGLI 134 (401)
T ss_dssp GCHHHHHHHHHHHHHHCSCCCS--BTTTBCCBHHHHHHHHHHHHHTTC-SEEEEESCHHH-HHHHHHHHHHHH--STTCE
T ss_pred CCHHHHHHHHHHHHHcCCCCCC--cCcccCChHHHHHHHHHHHHHhCC-CcEEEECCcHH-HHHHHHHHHhcC--CCCCE
Confidence 5789999999998775444442 122222336788999999999997 45677766544 777777765421 58899
Q ss_pred EEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC----CCceEEEEeccccccccccChHHHHHHHHh
Q 040741 149 VITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR----PDTGLISVMAVNNEIGVIQPMEEIGQICKE 224 (457)
Q Consensus 149 vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~----~~t~li~i~~~~~~~G~~~~l~~i~~l~~~ 224 (457)
|+++.++|+++..+++.. |.+++.++.+ |+++++++++ +++++|++++++||+|.+.|+++|.++|++
T Consensus 135 Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 206 (401)
T 2bwn_A 135 IYSDSLNHASMIEGIKRN---AGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEE 206 (401)
T ss_dssp EEEETTCCHHHHHHHHHS---CCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred EEECchhhHHHHHHHHHc---CCeEEEEcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHH
Confidence 999999999998877654 9999999875 7888888886 688999999999999999999999999999
Q ss_pred cCCcEEEehhhhcCCCcc---cC---CC--CcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCC
Q 040741 225 FKIPFHTDAAQALGKIPV---DV---EK--WNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296 (457)
Q Consensus 225 ~~v~li~D~a~~~g~~~~---~~---~~--~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 296 (457)
||+++|+|++|+.|.... .+ .. .+.|+++.|++|.+|..| |+++.+++..+.+...... ..+..+++
T Consensus 207 ~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~~----~~~~~~~~ 281 (401)
T 2bwn_A 207 FGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG-GYIAASARMVDAVRSYAPG----FIFSTSLP 281 (401)
T ss_dssp HTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC-EEEEECHHHHHHHHHHCHH----HHTSBCCC
T ss_pred cCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC-CEEecCHHHHHHHHHhCcC----ceecCCCC
Confidence 999999999999553211 00 11 135899999999988777 9998876554443321111 01223343
Q ss_pred ChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-ccchHHHhcc---c
Q 040741 297 PTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-VEGESLLMGL---K 371 (457)
Q Consensus 297 ~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l---~ 371 (457)
+ ..++++.++++.+.. ++++..++.+++++++.+.|.+ + ++.+.++. .+++.+.++. .+..++...| +
T Consensus 282 ~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~~~~ 354 (401)
T 2bwn_A 282 P-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA-L-GMPIIDHG----SHIVPVVIGDPVHTKAVSDMLLSDY 354 (401)
T ss_dssp H-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCCS----SSCEEEECCCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-C-CCcccCCC----CCeEEEEeCChHHHHHHHHHHHhcC
Confidence 3 666677778877654 3688899999999999999998 5 77665432 2355555542 3345666555 3
Q ss_pred CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 372 EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 372 ~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
||.+.++..+. .+ .+.+++||+++.+++++|+++++++|+++++++
T Consensus 355 gi~v~~~~~~~--------------~~--~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 355 GVYVQPINFPT--------------VP--RGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp CEECCEECTTT--------------SC--TTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred CEEEeecCCCC--------------CC--CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 88887764321 11 123689999999999999999999999987654
No 120
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.97 E-value=1.8e-29 Score=253.82 Aligned_cols=343 Identities=14% Similarity=0.139 Sum_probs=240.5
Q ss_pred cCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCC-CC--CccchhhhHHHHHHHHHHHHHHHhC--------CCCCcEE
Q 040741 54 IAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNP-HS--RTHLFGWESEVAVETARSQIADLIG--------ASPKEII 122 (457)
Q Consensus 54 ~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p-~~--~~~~~~~~~~~~~~~~~~~la~~~g--------~~~~~i~ 122 (457)
+..+.|.|+.+.+..+.+.+.+++.+......-.+ .+ .....+|.......++++.++++++ +++++++
T Consensus 36 ~p~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~ 115 (435)
T 3piu_A 36 NTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLV 115 (435)
T ss_dssp BTTSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEE
T ss_pred CCCCeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEE
Confidence 34567889888877777777777776543211000 00 0000122222334678888888887 6678899
Q ss_pred EeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCC-----
Q 040741 123 FTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRP----- 195 (457)
Q Consensus 123 ~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~----- 195 (457)
+|+|||+|+.++++++. ++|+.|+++.+.|.++...+.. ..|.+++.++.+.+ ..+|+++|++++++
T Consensus 116 ~~~gg~~a~~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 189 (435)
T 3piu_A 116 LTAGATSANETFIFCLA----DPGEAVLIPTPYYPGFDRDLKW--RTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRN 189 (435)
T ss_dssp EEEHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHTTT--TTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTT
T ss_pred EcCChHHHHHHHHHHhc----CCCCeEEECCCccccHHHHHHH--hcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcC
Confidence 99999999999999998 8999999999999998876541 34999999998743 45899999999975
Q ss_pred -CceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc----ccCC----C---------CcccEEEe
Q 040741 196 -DTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP----VDVE----K---------WNVSLMSL 254 (457)
Q Consensus 196 -~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~----~~~~----~---------~~~Di~~~ 254 (457)
++++|++++++||+|.+.| +++|+++|++||+++|+|++|+.+... .... + .+.++++.
T Consensus 190 ~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~ 269 (435)
T 3piu_A 190 LRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVY 269 (435)
T ss_dssp CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEE
T ss_pred CCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEE
Confidence 7899999999999999988 578888899999999999999853221 1110 1 22348899
Q ss_pred ccccccCCCC--ceEEEEecC-CCccccccccCCccccccccCCCChhHHHHHHHHHHH---HHHhhHHHHHHHHHHHHH
Q 040741 255 SGHKIYGPKG--VGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI---AKKEMDYDHKRITALHDR 328 (457)
Q Consensus 255 s~~K~~g~~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~---~~~~~~~~~~~~~~~~~~ 328 (457)
|++|.+|.+| +|+++++++ ....+.... ..+..+.....++.++++. +.+.+++..+++++++++
T Consensus 270 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
T 3piu_A 270 SLSKDLGLPGFRVGAIYSNDDMVVAAATKMS---------SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKK 340 (435)
T ss_dssp ESSSSSCCGGGCEEEEEESCHHHHHHHHHHG---------GGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccCCCceeEEEEEeCCHHHHHHHHHHh---------hcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999887554 799998543 322222211 1123445555555444442 233467788889999999
Q ss_pred HHHHHhhcCCCeEEeCCCCCcccceEEEEEccc-------cchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCC
Q 040741 329 LLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-------EGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVD 398 (457)
Q Consensus 329 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~ 398 (457)
+.+.|++ . ++.+..+.. +.++.+.++.. +..++...+ + ||.+.+|..|.+.
T Consensus 341 l~~~L~~-~-g~~~~~~~~---g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-------------- 401 (435)
T 3piu_A 341 LVSGLQK-S-GISCLNGNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCT-------------- 401 (435)
T ss_dssp HHHHHHT-T-TCEECCCCS---SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS--------------
T ss_pred HHHHHHh-c-CCcccCCCe---eEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCC--------------
Confidence 9999998 4 777765321 24455555432 233555555 4 9999998876531
Q ss_pred ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 399 EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 399 ~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
..+++||+++.. +++++++++++|++++++++
T Consensus 402 ---~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 402 ---EPGWFRVCFANL-PERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp ---STTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred ---CCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence 237999999766 89999999999999998765
No 121
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.97 E-value=9.6e-30 Score=246.36 Aligned_cols=296 Identities=15% Similarity=0.113 Sum_probs=210.1
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeCCCCCC
Q 040741 105 TARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPVGADGI 183 (457)
Q Consensus 105 ~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~~~~~~ 183 (457)
++++.+++++|.+ +.+++++||+|+++++.++. ++|++|+++.++|.++...+.. ++..|+++++++.
T Consensus 2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~~----~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----- 70 (331)
T 1pff_A 2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL----KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM----- 70 (331)
T ss_dssp HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-----
T ss_pred hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-----
Confidence 6889999999986 45566667999999999887 7899999999999998877654 3556999999986
Q ss_pred CCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHh-cCCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-
Q 040741 184 VNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE-FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG- 261 (457)
Q Consensus 184 ~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~-~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g- 261 (457)
.|++++++++++++++|++++++||+|.+.|+++|.++|++ +|+++|+|++|+.|....+. .++.|++++|+||++|
T Consensus 71 ~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~~~ 149 (331)
T 1pff_A 71 AVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL-DLGVDIVVHSATKYING 149 (331)
T ss_dssp TSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTSS
T ss_pred CCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh-hcCCcEEEEECccccCC
Confidence 38899999999999999999999999999999999999999 99999999999877643333 4578999999999665
Q ss_pred CCC--ceEEEEec-CCCccccccccC-CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc-
Q 040741 262 PKG--VGALYMRR-RPRIRVEPLING-GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK- 336 (457)
Q Consensus 262 ~~G--~G~l~~~~-~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 336 (457)
|.+ +|++++++ +..+++.+...+ ++ ++.+.....++..+++.. ....++..++.+.+.+.+++.
T Consensus 150 ~~~r~~G~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~~ 218 (331)
T 1pff_A 150 HTDVVAGLVCSRADIIAKVKSQGIKDITG-------AIISPHDAWLITRGTLTL----DMRVKRAAENAQKVAEFLHEHK 218 (331)
T ss_dssp SSSCCCEEEEECHHHHHHHHHTCCCCCCC-------CCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhhcC-------CCCCHHHHHHHHcCcchH----HHHHHHHHHHHHHHHHHHHcCC
Confidence 544 78999987 666666554433 21 245555444444444432 333444455555555555441
Q ss_pred ------------CCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEeccc---------CccCCCC--CChhHH
Q 040741 337 ------------LDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSG---------SACTSAS--LEPSYV 391 (457)
Q Consensus 337 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g---------~~~~~~~--~~~~~~ 391 (457)
++++.+.++.....++++.+.+. +..++...+ .||.+... .+|.+.. ..++.+
T Consensus 219 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~ 296 (331)
T 1pff_A 219 AVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEE 296 (331)
T ss_dssp TCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHH
T ss_pred CeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHH
Confidence 12222222111224566666664 445555555 57755433 2443221 234455
Q ss_pred HHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741 392 LRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ 429 (457)
Q Consensus 392 l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~ 429 (457)
+..+|+++ +.|||+++..++++++++++++|+++
T Consensus 297 ~~~~g~~~----~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 297 REAAGLTD----NLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp HHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred HHhcCCCC----CeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 66777653 89999999999999999999998754
No 122
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.97 E-value=3e-28 Score=247.14 Aligned_cols=345 Identities=12% Similarity=0.082 Sum_probs=238.2
Q ss_pred CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC---------cEEEeCC
Q 040741 56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK---------EIIFTSG 126 (457)
Q Consensus 56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~---------~i~~t~g 126 (457)
.++-|+++-.++..++.++..+..... |+....+..+....+...++.+++++++|.+.+ .++||+|
T Consensus 72 ~~p~~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~g 147 (475)
T 3k40_A 72 HSPKFHAYFPTANSYPAIVADMLSGAI----ACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGT 147 (475)
T ss_dssp TCTTBCCSSCCCCCHHHHHHHHHHHHH----CCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESC
T ss_pred CCcCceeeCCCCCcHHHHHHHHHHHHh----CccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCc
Confidence 345577776555444444433333222 111223333445556667788899999998753 5999999
Q ss_pred hHHHHHHHHHHhhhhhc---------------CCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHH
Q 040741 127 ATESNNVSIKGVMHFYK---------------DKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRA 191 (457)
Q Consensus 127 ~T~a~~~al~~~~~~~~---------------~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~ 191 (457)
||+|+.+++.+.+.... .+++.|+++..+|.++..+++.. |++++.++++.++ +|+++|++
T Consensus 148 gt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~---g~~~~~v~~d~~~-~d~~~L~~ 223 (475)
T 3k40_A 148 ASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLG---GVKLRSVQSENHR-MRGAALEK 223 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHH---TCEEEEECCBTTB-CCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHc---CCceEEEECCCCC-cCHHHHHH
Confidence 99999999998764321 13468999999999999998877 9999999999889 99999999
Q ss_pred hcCCC------ceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-----CCC-CcccEEEecccc-
Q 040741 192 AIRPD------TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-----VEK-WNVSLMSLSGHK- 258 (457)
Q Consensus 192 ~i~~~------t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-----~~~-~~~Di~~~s~~K- 258 (457)
+|+++ +.+|++++++|++|.+.|+++|+++|++||+++|+|+|++.+....+ ... ..+|++++++||
T Consensus 224 ~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~ 303 (475)
T 3k40_A 224 AIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKW 303 (475)
T ss_dssp HHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHH
T ss_pred HHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhc
Confidence 99764 67888999999999999999999999999999999999987654211 111 146999999999
Q ss_pred ccCCCCceEEEEecCCC-cc-c---cccccCCccc--c-----ccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHH
Q 040741 259 IYGPKGVGALYMRRRPR-IR-V---EPLINGGGQE--R-----GIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITAL 325 (457)
Q Consensus 259 ~~g~~G~G~l~~~~~~~-~~-~---~~~~~~~~~~--~-----~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~ 325 (457)
+++|.|+|+++++++.. .+ + .+++...... . ....+. + ....++..++..+. ++++++.++..++
T Consensus 304 l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr-~-~~~l~l~~al~~~g~~g~~~~~~~~~~~ 381 (475)
T 3k40_A 304 MLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGR-R-FRALKLWFVLRLYGVENLQAHIRRHCNF 381 (475)
T ss_dssp SSCCSSCEEEEESSGGGC---------------------------CCCG-G-GTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCC-c-ccHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66788999999987532 11 1 1111110000 0 000111 1 12344455555443 4689999999999
Q ss_pred HHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc--chHHHhcc--cCeEe-cccCccCCCCCChhHHHHHcCCCcc
Q 040741 326 HDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE--GESLLMGL--KEVAV-SSGSACTSASLEPSYVLRALGVDED 400 (457)
Q Consensus 326 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l--~~i~~-~~g~~~~~~~~~~~~~l~~~g~~~~ 400 (457)
++++.+.|++ ++++++..++. .+++.|.+++.+ ..++...| +|+.+ .++. .
T Consensus 382 a~~l~~~L~~-~~g~~l~~~~~---~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~--------------------~ 437 (475)
T 3k40_A 382 AKQFGDLCVA-DSRFELAAEIN---MGLVCFRLKGSNERNEALLKRINGRGHIHLVPAK--------------------I 437 (475)
T ss_dssp HHHHHHHHHH-STTEEESSCCB---TTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEE--------------------E
T ss_pred HHHHHHHHhc-CCCEEEecCCc---eEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeE--------------------E
Confidence 9999999999 89999987542 566777775422 24455555 23322 2111 1
Q ss_pred CCCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHH
Q 040741 401 MAHTSIRFGIGR-FTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 401 ~~~~~iRi~~~~-~~t~edid~~~~~l~~~~~~~~ 434 (457)
.+...+||++.. .++++||++++++|+++++++.
T Consensus 438 ~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~ 472 (475)
T 3k40_A 438 KDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME 472 (475)
T ss_dssp TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 123799999764 5689999999999999998764
No 123
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.97 E-value=1.9e-29 Score=250.33 Aligned_cols=330 Identities=15% Similarity=0.165 Sum_probs=234.8
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-hhhhcCCC
Q 040741 68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV-MHFYKDKK 146 (457)
Q Consensus 68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~-~~~~~~~g 146 (457)
.+++++.+++.+.+.+.+.++. | +...++++.+++++|. +++++++|||+|++++++++ . ++|
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~------g----~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~~----~~g 72 (394)
T 1o69_A 9 HMGGNELKYIEEVFKSNYIAPL------G----EFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVAGV----KQD 72 (394)
T ss_dssp ---CCHHHHHHHHHHHTTTSCT------T----HHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTTC----CTT
T ss_pred CCCHHHHHHHHHHHHcCCccCC------C----hHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCC----CCC
Confidence 4667889999988865332211 1 5688999999999997 46999999999999999998 6 789
Q ss_pred CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC---CceEEEEeccccccccccChHHHHHHHH
Q 040741 147 RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP---DTGLISVMAVNNEIGVIQPMEEIGQICK 223 (457)
Q Consensus 147 ~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~---~t~li~i~~~~~~~G~~~~l~~i~~l~~ 223 (457)
++|+++.++|.++..+++.. |++++.++.+.++.+|++++++++++ ++++|++++ ++|...++++|.++|+
T Consensus 73 d~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~ 146 (394)
T 1o69_A 73 DIVLASSFTFIASVAPICYL---KAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICK 146 (394)
T ss_dssp CEEEEESSSCGGGTHHHHHT---TCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHH
T ss_pred CEEEECCCccHHHHHHHHHc---CCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHH
Confidence 99999999999999887765 99999999987788999999999976 789998886 6999999999999999
Q ss_pred hcCCcEEEehhhhcCCCcccCC--C-CcccEEEeccccccCCCCceEEEEe-cCCCccccccccCC--------cccccc
Q 040741 224 EFKIPFHTDAAQALGKIPVDVE--K-WNVSLMSLSGHKIYGPKGVGALYMR-RRPRIRVEPLINGG--------GQERGI 291 (457)
Q Consensus 224 ~~~v~li~D~a~~~g~~~~~~~--~-~~~Di~~~s~~K~~g~~G~G~l~~~-~~~~~~~~~~~~~~--------~~~~~~ 291 (457)
++|+++|+|++|+.|....+.. . .++|++++|.+|.+|+.++|+++++ ++..+++......+ ....++
T Consensus 147 ~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~ 226 (394)
T 1o69_A 147 ENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGY 226 (394)
T ss_dssp HTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCC
T ss_pred HcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCc
Confidence 9999999999999765432211 1 3578888888998887779999996 45555554332211 012233
Q ss_pred ccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc--eEEEEEcc---------
Q 040741 292 RSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG--NLNLSFAY--------- 360 (457)
Q Consensus 292 ~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------- 360 (457)
++++++....+++.. + +.+++..++.+++++++.+.|.+ + +.+.++.....++ ++.+.++.
T Consensus 227 ~~~~~~~~aa~~l~~-l----~~l~~~~~~~~~~~~~l~~~L~~-~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 298 (394)
T 1o69_A 227 NYRLSNVLGAIGVAQ-M----EVLEQRVLKKREIYEWYKEFLGE-Y--FSFLDELENSRSNRWLSTALINFDKNELNACQ 298 (394)
T ss_dssp BCBCCHHHHHHHHHH-H----TTHHHHHHHHHHHHHHHHHHHTT-T--EECCCCCTTEECCCSSEEEEESCCGGGSCCCC
T ss_pred ccCcCHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHhcc-c--ccccCCCCCCcceeEEEEEEecchhhcccccc
Confidence 344554444443322 2 23566778899999999999988 5 6665543221122 35566652
Q ss_pred -------------ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHc---C--CCccCCCCeEEEecCCCCCHHHHH
Q 040741 361 -------------VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRAL---G--VDEDMAHTSIRFGIGRFTTEAEVD 420 (457)
Q Consensus 361 -------------~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~---g--~~~~~~~~~iRi~~~~~~t~edid 420 (457)
.+..++...| +||.+++|..|... .| .+..+ + +......+.+|+.++.++|+||+|
T Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~--~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~ 374 (394)
T 1o69_A 299 KDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHT--QE--VFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVY 374 (394)
T ss_dssp EEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGG--CG--GGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred ccccccccccccccCHHHHHHHHHHcCCcccccCCcccc--ch--hhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHH
Confidence 2455666666 69999988654210 11 11111 0 111112256778888899999999
Q ss_pred HHHHHHHHHHH
Q 040741 421 RAIELTVKQVE 431 (457)
Q Consensus 421 ~~~~~l~~~~~ 431 (457)
+++++|+++++
T Consensus 375 ~~~~~l~~~~~ 385 (394)
T 1o69_A 375 EISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 124
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.97 E-value=4.6e-28 Score=247.90 Aligned_cols=348 Identities=16% Similarity=0.162 Sum_probs=238.5
Q ss_pred CCcEEecCCCCCCCCHHHH-HHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHH
Q 040741 56 GRPLYLDMQATTPVDPRVL-DAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--PKEIIFTSGATESNN 132 (457)
Q Consensus 56 ~~~i~l~~~~~~~~~~~v~-~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~i~~t~g~T~a~~ 132 (457)
..+-||++-.+...++.++ +++...+.. + ...+..+....+....+.+++++++|.+ ++.++||+|||+|+.
T Consensus 94 ~~p~f~~~~~~~~~~~~~~~e~l~~~~~~---~--~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~ 168 (511)
T 3vp6_A 94 GHPRFFNQLSTGLDIIGLAGEWLTSTANT---N--MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNM 168 (511)
T ss_dssp TSTTEESSSSCCCCHHHHHHHHHHHHHCC---C--SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHH
T ss_pred CCCCceEeecCCCcHHHHHHHHHHHHhcc---C--CCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHH
Confidence 4556888765554444444 444444421 1 1133334455566677888999999997 457999999999999
Q ss_pred HHHHHhhhhh------c----CCCCEEEEcCCCCcchHHHHHHHHhcCc---EEEEEeCCCCCCCCHHHHHHhcCCC---
Q 040741 133 VSIKGVMHFY------K----DKKRHVITTQTEHKCVLDSCRHLQQEGF---EITYLPVGADGIVNLDELRAAIRPD--- 196 (457)
Q Consensus 133 ~al~~~~~~~------~----~~g~~vi~~~~~h~~~~~~~~~~~~~G~---~v~~v~~~~~~~~d~~~le~~i~~~--- 196 (457)
.++.++...+ . .+++.|+++...|.++..+++.+ |. +++.++++.++.+|+++|+++|+++
T Consensus 169 ~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~---g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~ 245 (511)
T 3vp6_A 169 YSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL---GFGTDNVILIKCNERGKIIPADFEAKILEAKQK 245 (511)
T ss_dssp HHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT---TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHc---CCCCCcEEEeecCCCCccCHHHHHHHHHHHHhc
Confidence 9998877421 0 15678999999999999998877 66 8999999988999999999999765
Q ss_pred ---ceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-----CC-CCcccEEEeccccc-cCCCCce
Q 040741 197 ---TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-----VE-KWNVSLMSLSGHKI-YGPKGVG 266 (457)
Q Consensus 197 ---t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-----~~-~~~~Di~~~s~~K~-~g~~G~G 266 (457)
+++|++++++|++|.+.|+++|+++|++||+++|+|+||+.+....+ +. ..++|++++++||+ ++|.|+|
T Consensus 246 g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g 325 (511)
T 3vp6_A 246 GYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCS 325 (511)
T ss_dssp TCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCE
T ss_pred CCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeE
Confidence 88999999999999999999999999999999999999998766321 11 12579999999995 5688999
Q ss_pred EEEEecCC-Ccccc----ccccCCcc----c-----cccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHH
Q 040741 267 ALYMRRRP-RIRVE----PLINGGGQ----E-----RGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLN 331 (457)
Q Consensus 267 ~l~~~~~~-~~~~~----~~~~~~~~----~-----~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~ 331 (457)
+++++++. +.+.. .++..... . .....+.. ....++..++... .++++++.++..++++++.+
T Consensus 326 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~--~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~ 403 (511)
T 3vp6_A 326 AILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRH--VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYA 403 (511)
T ss_dssp EEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCc--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99998753 22211 11111000 0 00001111 1234444555544 34689999999999999999
Q ss_pred HHhhcCCCeEEeCCCCCcccceEEEEEcccc-----------------chHHHhcc--cCeEecccCccCCCCCChhHHH
Q 040741 332 GIKEKLDGVVVNGSMERRYIGNLNLSFAYVE-----------------GESLLMGL--KEVAVSSGSACTSASLEPSYVL 392 (457)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l 392 (457)
.|++ .|++++..+... ..+++.|.+.... ...+...| +|+.+.....
T Consensus 404 ~L~~-~pg~~l~~~~~p-~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~------------ 469 (511)
T 3vp6_A 404 KIKN-REEFEMVFNGEP-EHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQP------------ 469 (511)
T ss_dssp HHHS-CTTEEESSSSCC-SSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEE------------
T ss_pred HHhc-CCCEEEEecCCC-CeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEE------------
Confidence 9999 899999873111 2344555543111 01244444 3433322100
Q ss_pred HHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHHHHHHH
Q 040741 393 RALGVDEDMAHTSIRFGI-GRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 393 ~~~g~~~~~~~~~iRi~~-~~~~t~edid~~~~~l~~~~~~~ 433 (457)
.....+++||++ +..++.+||+++++.|++..+.+
T Consensus 470 ------~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 470 ------QGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp ------ETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred ------eCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 001124799999 67899999999999999887654
No 125
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.97 E-value=2.4e-29 Score=251.68 Aligned_cols=348 Identities=15% Similarity=0.114 Sum_probs=236.8
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-hhhhcC
Q 040741 66 TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV-MHFYKD 144 (457)
Q Consensus 66 ~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~-~~~~~~ 144 (457)
..++++++.+++.+.+.+. +..+..+..|. .+...++++.+++++|.+ ++++++|||+|++++++++ . +
T Consensus 11 ~~~~~~~~~~a~~~~~~~~--~~~~~~~~~g~--~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~~----~ 80 (418)
T 2c81_A 11 WPQHSDRTRRKIEEVFQSN--RWAISGYWTGE--ESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALGI----G 80 (418)
T ss_dssp SSCCCHHHHHHHHHHHHHT--CCSTTSBCCSS--CCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTC----C
T ss_pred CCCCCHHHHHHHHHHHhcC--CccccCcccCC--HHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC----C
Confidence 3467899999999998753 21111122222 246789999999999986 4888999999999999998 5 7
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHH
Q 040741 145 KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICK 223 (457)
Q Consensus 145 ~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~ 223 (457)
+|++|+++.++|.++..+++.. |++++.++++. ++.+|++++++++++++++|+++ |++|...++++|.++|+
T Consensus 81 ~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~~~~ 154 (418)
T 2c81_A 81 EGDEVIVPSLTWIATATAVLNV---NALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPV---HLFGSMANMDEINEIAQ 154 (418)
T ss_dssp TTCEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCCHHHHHHHHH
T ss_pred CcCEEEECCCccHhHHHHHHHc---CCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEe---CCcCCcccHHHHHHHHH
Confidence 8999999999999999887655 99999999985 67899999999999999988865 47999999999999999
Q ss_pred hcCCcEEEehhhhcCCC-cc-cCCCCcccEEEecc--ccccCCCCceEEEEe-cCCCccccccccCCcccc--------c
Q 040741 224 EFKIPFHTDAAQALGKI-PV-DVEKWNVSLMSLSG--HKIYGPKGVGALYMR-RRPRIRVEPLINGGGQER--------G 290 (457)
Q Consensus 224 ~~~v~li~D~a~~~g~~-~~-~~~~~~~Di~~~s~--~K~~g~~G~G~l~~~-~~~~~~~~~~~~~~~~~~--------~ 290 (457)
++|+++|+|++|+.+.. .. ..... .|+.++|+ ||.+|+..+|+++.+ ++..+++.+....+.... .
T Consensus 155 ~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (418)
T 2c81_A 155 EHNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHG 233 (418)
T ss_dssp HTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTT
T ss_pred HCCCEEEEECcccccCccCCEecccc-cceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCccccccccccccc
Confidence 99999999999998763 11 11111 24555555 998776346888875 444555544333322111 0
Q ss_pred cc--cCCCChhH----HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC--c-ccceEEEEEc-
Q 040741 291 IR--SGTLPTPL----IVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER--R-YIGNLNLSFA- 359 (457)
Q Consensus 291 ~~--~~t~~~~~----~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~~- 359 (457)
+. .+++.... +..+.+++.. ..+.+++..++.+++++++.+.|.+ ++++.+..++.. . ...++.+.++
T Consensus 234 ~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (418)
T 2c81_A 234 DMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSK-IDGIKVMKRPPQVSRQTYYGYVFRFDP 312 (418)
T ss_dssp CBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-STTEEECCCCTTEEECCCSEEEEEECG
T ss_pred hhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcccCCCCCCCcccccEEEEEEEcc
Confidence 11 10111100 0111122221 1234677888888999999999988 889988754432 1 1234446665
Q ss_pred ----cccchHHHhcc--c-CeE---ecccCccCCCCCChhHH-H-------------H-----HcCCCccCCCCeEEEec
Q 040741 360 ----YVEGESLLMGL--K-EVA---VSSGSACTSASLEPSYV-L-------------R-----ALGVDEDMAHTSIRFGI 410 (457)
Q Consensus 360 ----~~~~~~~~~~l--~-~i~---~~~g~~~~~~~~~~~~~-l-------------~-----~~g~~~~~~~~~iRi~~ 410 (457)
+.+..++...| + ||. +..|..+.. ..|.+. + + .++..+....+.|||++
T Consensus 313 ~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~ 390 (418)
T 2c81_A 313 VKFGGLNADQFCEILREKLNMGTFYLHPPYLPVH--KNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHH 390 (418)
T ss_dssp GGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGG--GCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEG
T ss_pred ccccccCHHHHHHHHHHcCCCCcccccccccccc--cCchhcccccccccccccccccccccCCChHHHHHHhCEEEecC
Confidence 34667777777 5 898 877763311 111100 0 0 00000011236999999
Q ss_pred CCCC-CHHHHHHHHHHHHHHHHHH
Q 040741 411 GRFT-TEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 411 ~~~~-t~edid~~~~~l~~~~~~~ 433 (457)
+..+ |+||||+++++|+++++++
T Consensus 391 ~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 391 AILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred CccCCCHHHHHHHHHHHHHHHHhh
Confidence 9999 9999999999999988754
No 126
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.96 E-value=6e-29 Score=247.19 Aligned_cols=342 Identities=15% Similarity=0.115 Sum_probs=237.5
Q ss_pred EecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741 60 YLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV 138 (457)
Q Consensus 60 ~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~ 138 (457)
|+|+.... ++++++.+++.+.+... .+ +. .+...++++.+++++|.+ ++++++|||+|+.++++++
T Consensus 32 ~id~~~~~~~~~~~v~~a~~~~~~~~-------~y--~~--~~~~~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~ 98 (399)
T 2oga_A 32 FLDLKAAYEELRAETDAAIARVLDSG-------RY--LL--GPELEGFEAEFAAYCETD--HAVGVNSGMDALQLALRGL 98 (399)
T ss_dssp SCCHHHHHHHTHHHHHHHHHHHHHHT-------CC--SS--SHHHHHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHT
T ss_pred ccccCcCCCCCCHHHHHHHHHHHhcC-------CC--CC--chhHHHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHh
Confidence 44444333 34589999999987641 11 11 156788999999999986 5889999999999999998
Q ss_pred -hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEeccccccccccChH
Q 040741 139 -MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPME 216 (457)
Q Consensus 139 -~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~ 216 (457)
. ++|++|+++.+.|+++..+++.. |.+++.++.+. ++.+|++++++++++++++|++ +|++|.+.|++
T Consensus 99 ~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~---~n~tG~~~~l~ 168 (399)
T 2oga_A 99 GI----GPGDEVIVPSHTYIASWLAVSAT---GATPVPVEPHEDHPTLDPLLVEKAITPRTRALLP---VHLYGHPADMD 168 (399)
T ss_dssp TC----CTTCEEEEESSSCTHHHHHHHHT---TCEEEEECBCSSSSSBCHHHHHHHCCTTEEEECC---BCGGGCCCCHH
T ss_pred CC----CCcCEEEECCCccHHHHHHHHHC---CCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEEE---eCCcCCccCHH
Confidence 5 78999999999999988876655 99999999875 5789999999999988888774 57899999999
Q ss_pred HHHHHHHhcCCcEEEehhhhcCCCcccCCCCc--ccEEEecc--ccccCCCC-ceEEEEe-cCCCccccccccCCccccc
Q 040741 217 EIGQICKEFKIPFHTDAAQALGKIPVDVEKWN--VSLMSLSG--HKIYGPKG-VGALYMR-RRPRIRVEPLINGGGQERG 290 (457)
Q Consensus 217 ~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~--~Di~~~s~--~K~~g~~G-~G~l~~~-~~~~~~~~~~~~~~~~~~~ 290 (457)
+|.++|+++|+++|+|++|+.|... +....+ .|++++|+ +|++|+.| +|+++.+ ++..+++.+....+....
T Consensus 169 ~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~~- 246 (399)
T 2oga_A 169 ALRELADRHGLHIVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQK- 246 (399)
T ss_dssp HHHHHHHHHTCEECEECTTCTTCEE-TTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSST-
T ss_pred HHHHHHHHcCCEEEEECcccccCcc-CCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCcccc-
Confidence 9999999999999999999977542 222223 59999999 59887743 6888776 455555544333221110
Q ss_pred cc------cCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccch
Q 040741 291 IR------SGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGE 364 (457)
Q Consensus 291 ~~------~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (457)
+. ....+...++++..+++ .++...++.+++++++.+.|.+ ++++.+...++...+.++.+.+...+..
T Consensus 247 ~~~~~~g~~~~~~~~~~a~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (399)
T 2oga_A 247 YSHETKGTNSRLDEMQAAVLRIRLA----HLDSWNGRRSALAAEYLSGLAG-LPGIGLPVTAPDTDPVWHLFTVRTERRD 321 (399)
T ss_dssp TCCCSCCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHTTT-CTTCBCCCCCTTEECCCSSEEEECSSHH
T ss_pred ccccccccCCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCCCCcceeEEEEEECCCHH
Confidence 10 11344444444444443 3455667778889999999988 7887765433332222222444334556
Q ss_pred HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccC-------CCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDM-------AHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~-------~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
++...| +||.+..+.. .+ ......+..+|..... ..+.|||+++..++++|+++++++|++++++++
T Consensus 322 ~l~~~L~~~gI~v~~~~~-~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l~ 397 (399)
T 2oga_A 322 ELRSHLDARGIDTLTHYP-VP--VHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERVD 397 (399)
T ss_dssp HHHHHHHHTTBCCBCSCS-SC--GGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHCCCceecCCC-Cc--cccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 676666 6888876431 11 0011133344432111 136899999999999999999999999887543
No 127
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=243.55 Aligned_cols=344 Identities=13% Similarity=0.089 Sum_probs=238.4
Q ss_pred CcEEecCCCCCCCCHHHH-HHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC----------cEEEeC
Q 040741 57 RPLYLDMQATTPVDPRVL-DAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK----------EIIFTS 125 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~-~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----------~i~~t~ 125 (457)
++.|+++-.++...+.++ +.+...+.. +. ..+..+....+...++.+++++++|.+.+ ..+||+
T Consensus 78 ~p~~~~~~~~~~~~~~~~~~~~~~~~n~---~~--~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ 152 (481)
T 4e1o_A 78 SPHMHAYYPALTSWPSLLGDMLADAINC---LG--FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQS 152 (481)
T ss_dssp STTBCSSSCCCCCHHHHHHHHHHHHHCC---CC--SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEES
T ss_pred CCCeeEeCCCCCCHHHHHHHHHHHHhCc---cc--CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeC
Confidence 455777654444444444 333334321 21 23333445556777788899999998643 589999
Q ss_pred ChHHHHHHHHHHhhhhhc---------------CCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHH
Q 040741 126 GATESNNVSIKGVMHFYK---------------DKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELR 190 (457)
Q Consensus 126 g~T~a~~~al~~~~~~~~---------------~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le 190 (457)
|||+|+..++.+.+.... .+++.|+++..+|.++.++++.. |.+++.++++.++.+|+++|+
T Consensus 153 ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~---g~~~~~v~~~~~~~~d~~~Le 229 (481)
T 4e1o_A 153 TVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLIS---LVKMKFLPVDDNFSLRGEALQ 229 (481)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhC---CCceEEEEcCCCCcCCHHHHH
Confidence 999999999998764321 15678999999999999998876 999999999988999999999
Q ss_pred HhcCCC------ceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-C--CCC---cccEEEecccc
Q 040741 191 AAIRPD------TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-V--EKW---NVSLMSLSGHK 258 (457)
Q Consensus 191 ~~i~~~------t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-~--~~~---~~Di~~~s~~K 258 (457)
++|+++ +.+|++++++|++|.+.|+++|+++|++||+++|+|+|++.+....+ . ... .+|++++++||
T Consensus 230 ~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK 309 (481)
T 4e1o_A 230 KAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSK 309 (481)
T ss_dssp HHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHH
T ss_pred HHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHH
Confidence 999754 67889999999999999999999999999999999999987644221 1 111 35999999999
Q ss_pred -ccCCCCceEEEEecCCC-cc-c---cccccCCccc-------cccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHH
Q 040741 259 -IYGPKGVGALYMRRRPR-IR-V---EPLINGGGQE-------RGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITA 324 (457)
Q Consensus 259 -~~g~~G~G~l~~~~~~~-~~-~---~~~~~~~~~~-------~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~ 324 (457)
+++|.|+|+++++++.. .+ + ..++...... .....+. . ....++..++..+ .++++++.++..+
T Consensus 310 ~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r-~-~~~l~~~~al~~~g~~g~~~~~~~~~~ 387 (481)
T 4e1o_A 310 WMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSR-R-FRSVKLWFVIRSFGVKNLQAHVRHGTE 387 (481)
T ss_dssp HSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCC-C-CTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCC-C-ccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56688999999987522 11 1 1111111000 0001111 1 1233344455443 3468999999999
Q ss_pred HHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc--chHHHhcc--cCe-EecccCccCCCCCChhHHHHHcCCCc
Q 040741 325 LHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE--GESLLMGL--KEV-AVSSGSACTSASLEPSYVLRALGVDE 399 (457)
Q Consensus 325 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l--~~i-~~~~g~~~~~~~~~~~~~l~~~g~~~ 399 (457)
+++++.+.|++ ++++.+..++. .+++.|.+++.+ ..++...| +|+ .+.++.
T Consensus 388 ~a~~l~~~L~~-~~g~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-------------------- 443 (481)
T 4e1o_A 388 MAKYFESLVRN-DPSFEIPAKRH---LGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPAT-------------------- 443 (481)
T ss_dssp HHHHHHHHHHT-CTTEECCSCCC---SSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEE--------------------
T ss_pred HHHHHHHHHhc-CCCeEEecCCc---eeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeE--------------------
Confidence 99999999999 89999976542 456667765422 23455555 342 222111
Q ss_pred cCCCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHH
Q 040741 400 DMAHTSIRFGIGR-FTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 400 ~~~~~~iRi~~~~-~~t~edid~~~~~l~~~~~~~~ 434 (457)
..+...+||++.. .++++||++++++|+++++++-
T Consensus 444 ~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 444 IQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1123689999775 4589999999999999988753
No 128
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.96 E-value=4.3e-28 Score=240.30 Aligned_cols=321 Identities=16% Similarity=0.180 Sum_probs=231.2
Q ss_pred CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+.-|+|+.++. ..+|++.+++.+.+...... .. ....+...++++++++++| +++++|++|||+
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~------~~~~~~~~~l~~~la~~~g--~~~v~~~~~gt~ 104 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLT-SR------AFHSDQLGPWYEKVAKLTN--KEMVLPMNTGAE 104 (392)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCC-CT------TSEETTHHHHHHHHHHHHT--CSEEEEESSHHH
T ss_pred CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcccc-cc------ccCCHHHHHHHHHHHHhcC--CCEEEEeCcHHH
Confidence 445688887643 25899999999988653211 11 0112567889999999999 457999999999
Q ss_pred HHHHHHHHhhhhh------cCCCCEEEEcCCCCcchHHHHHHHHhc-C---------cEEEEEeCCCCCCCCHHHHHHhc
Q 040741 130 SNNVSIKGVMHFY------KDKKRHVITTQTEHKCVLDSCRHLQQE-G---------FEITYLPVGADGIVNLDELRAAI 193 (457)
Q Consensus 130 a~~~al~~~~~~~------~~~g~~vi~~~~~h~~~~~~~~~~~~~-G---------~~v~~v~~~~~~~~d~~~le~~i 193 (457)
|++++++.+.... ...+++|++..+.|.+....+..+... + ..+..++.+ |++++++++
T Consensus 105 a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l 179 (392)
T 3ruy_A 105 AVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAI 179 (392)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHh
Confidence 9999999776320 012679999888887766555443110 1 124444433 899999999
Q ss_pred CCCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC----cccCCCCcccEEEeccccccCC--
Q 040741 194 RPDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI----PVDVEKWNVSLMSLSGHKIYGP-- 262 (457)
Q Consensus 194 ~~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~----~~~~~~~~~Di~~~s~~K~~g~-- 262 (457)
++++++|++++++||+|.+.| +++|.++|++||+++|+|++|+ ++.. ..+.....+|++++| |.+++
T Consensus 180 ~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~ 257 (392)
T 3ruy_A 180 TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILG--KALGGGV 257 (392)
T ss_dssp CTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTT
T ss_pred ccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEEc--hhhhCCh
Confidence 999999999999999999998 9999999999999999999995 3321 122222346877654 95443
Q ss_pred CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC--CCe
Q 040741 263 KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKL--DGV 340 (457)
Q Consensus 263 ~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~ 340 (457)
..+|+++++++..+++.+...+.. .+.++..+.++.++++.... ++..++.+++++++.+.|++ + +.+
T Consensus 258 ~~~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~-~~~~~~ 327 (392)
T 3ruy_A 258 FPISCAAANRDILGVFEPGSHGST-------FGGNPLACAVSIAALEVLEE--EKLTERSLQLGEKLVGQLKE-IDNPMI 327 (392)
T ss_dssp SCCEEEEECHHHHTTCCTTSSCCS-------STTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTT-CCCTTE
T ss_pred hhhEEEEECHHHHhhhccCCcCCC-------CCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence 348999998876666655443222 26677778878788877654 77888999999999999988 5 334
Q ss_pred EEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741 341 VVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE 418 (457)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed 418 (457)
..... .+.++.+.++. +..++...| +||.+.+|. .+++||+++..++++|
T Consensus 328 ~~~~~----~g~~~~~~~~~-~~~~l~~~l~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~~~ 379 (392)
T 3ruy_A 328 TEVRG----KGLFIGIELNE-PARPYCEQLKAAGLLCKETH-----------------------ENVIRIAPPLVISEED 379 (392)
T ss_dssp EEEEE----ETTEEEEEESS-CSHHHHHHHHTTTEECCCBT-----------------------TTEEEECCCTTCCHHH
T ss_pred eEEEe----eeeEEEEEEcc-hHHHHHHHHHHCCcEEecCC-----------------------CCEEEEECCCCCCHHH
Confidence 33221 24555566654 566776666 688887653 2799999999999999
Q ss_pred HHHHHHHHHHHH
Q 040741 419 VDRAIELTVKQV 430 (457)
Q Consensus 419 id~~~~~l~~~~ 430 (457)
+++++++|++++
T Consensus 380 i~~~~~~l~~~l 391 (392)
T 3ruy_A 380 LEWAFQKIKAVL 391 (392)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 129
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.96 E-value=2.2e-28 Score=238.63 Aligned_cols=314 Identities=15% Similarity=0.106 Sum_probs=230.8
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS 134 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a 134 (457)
...+.|..+.+. +.++++.+++.+.+....++|.. ...++++++++++|++++++++|+|+|+|++++
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~ 83 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEP-----------DAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQI 83 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCCT-----------TCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHH
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCCC-----------cHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHH
Confidence 566777666544 67899999999988554444432 125799999999999888999999999999999
Q ss_pred HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC-CCCCCCCHHHHHHhcCCCceEEEEecccccccccc
Q 040741 135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV-GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ 213 (457)
Q Consensus 135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~-~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~ 213 (457)
++++. |++|+++.+.|.++...++.. |++++.++. +.++.+++ +++++|++++++||+|.+.
T Consensus 84 ~~~l~------gd~Vi~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~--------~~~~~v~i~~p~nptG~~~ 146 (350)
T 3fkd_A 84 AQAFR------GSRSLIAIPSFAEYEDACRMY---EHEVCFYPSNEDIGEADF--------SNMDFCWLCNPNNPDGRLL 146 (350)
T ss_dssp HHHTT------TCEEEEEESCCHHHHHHHHHT---TCEEEEEETTSCGGGSCC--------TTCSEEEEESSCTTTCCCC
T ss_pred HHHHC------CCEEEEeCCCcHHHHHHHHHc---CCeEEEEecCCccccCcc--------CCCCEEEEeCCCCCcCCCC
Confidence 88765 899999999999988776665 999999998 65344444 6789999999999999999
Q ss_pred ChHHHHHHHHhcC-CcEEEehhhhcCCCc-----ccCCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCC
Q 040741 214 PMEEIGQICKEFK-IPFHTDAAQALGKIP-----VDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGG 285 (457)
Q Consensus 214 ~l~~i~~l~~~~~-v~li~D~a~~~g~~~-----~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~ 285 (457)
|++++.++++.++ .++|+|++|+..... ......+.++++.|++|.+|.+| +|+++++++..+++.....
T Consensus 147 ~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~-- 224 (350)
T 3fkd_A 147 QRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFST-- 224 (350)
T ss_dssp CHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCC--
Confidence 9999999998875 799999999743221 12233456689999999777443 8999997765555544332
Q ss_pred ccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchH
Q 040741 286 GQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGES 365 (457)
Q Consensus 286 ~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (457)
..+++.....++..+++......++.. +..++++++.+.|++ +|++.+..+. .+++.+.++..+..+
T Consensus 225 -------~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~L~~-~~~~~~~~~~----~~~~~~~~~~~~~~~ 291 (350)
T 3fkd_A 225 -------PWAVNALAIEAAKFILIHPAQFTLPIR-KWQRNTVDFITALNR-LDGVEVHPSG----TTFFLLRLKKGTAAE 291 (350)
T ss_dssp -------TTCSCHHHHHHHHHHHHCTTTTCCCHH-HHHHHHHHHHHHHHH-STTEEECCCS----SSEEEEEESSSCHHH
T ss_pred -------CCCCCHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHHHHHhc-CCCcEECCCC----CcEEEEECCCCCHHH
Confidence 225666666666555553221233333 344889999999998 7898886432 445556666445666
Q ss_pred HHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 366 LLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 366 ~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
+...| +||.+.+|..|.. ...++|||+++ +.+++++++++|++..++
T Consensus 292 l~~~L~~~~gi~v~~g~~f~~-----------------~~~~~iRis~~---~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 292 LKKYMLEEYNMLIRDASNFRG-----------------LDESYVRITTQ---RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp HHHHHHHTTCEECEECTTSTT-----------------CCTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCEEEEeCccCCC-----------------CCCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 76665 5899999887642 12389999987 689999999999887753
No 130
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.96 E-value=3.6e-30 Score=253.11 Aligned_cols=339 Identities=15% Similarity=0.145 Sum_probs=230.3
Q ss_pred EecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741 60 YLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV 138 (457)
Q Consensus 60 ~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~ 138 (457)
|+|++.+. ++++++.+++.+.+.+.+-. ..+...++++.+++++|.+ ++++++|||+|++++++++
T Consensus 4 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-----------~~~~~~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~ 70 (367)
T 3nyt_A 4 FIDLKNQQARIKDKIDAGIQRVLRHGQYI-----------LGPEVTELEDRLADFVGAK--YCISCANGTDALQIVQMAL 70 (367)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHCCCS-----------SCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHT
T ss_pred cccccccccccCHHHHHHHHHHHhcCCcc-----------CChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHh
Confidence 45554444 56788999998887653111 1156889999999999986 5999999999999999998
Q ss_pred hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEeccccccccccChHH
Q 040741 139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE 217 (457)
Q Consensus 139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~ 217 (457)
.. ++|++|+++.++|.++..+++.. |+++++++++.+ +.+|++++++++++++++|+ ++|++|...++++
T Consensus 71 ~~---~~gd~Vi~~~~~~~~~~~~~~~~---G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~ 141 (367)
T 3nyt_A 71 GV---GPGDEVITPGFTYVATAETVALL---GAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDA 141 (367)
T ss_dssp TC---CTTCEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHH
T ss_pred CC---CCcCEEEECCCccHHHHHHHHHc---CCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHH
Confidence 32 89999999999999999887766 999999999855 78999999999999998887 5668999999999
Q ss_pred HHHHHHhcCCcEEEehhhhcCCCcccCCCCcc--cEEEecc--ccccCCCC-ceEEEEec-CCCccccccccCCcccc--
Q 040741 218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNV--SLMSLSG--HKIYGPKG-VGALYMRR-RPRIRVEPLINGGGQER-- 289 (457)
Q Consensus 218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~--Di~~~s~--~K~~g~~G-~G~l~~~~-~~~~~~~~~~~~~~~~~-- 289 (457)
|.++|++||+++|+|++|+.|.. .+....+. |++++|+ +|.+|+.| +|+++.++ +..+++......+....
T Consensus 142 i~~la~~~~~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~~ 220 (367)
T 3nyt_A 142 INAIASKYGIPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRYH 220 (367)
T ss_dssp HHHHHHHTTCCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTE
T ss_pred HHHHHHHcCCEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcCce
Confidence 99999999999999999998765 22222222 8999996 89887743 57777754 34344444333222111
Q ss_pred ----ccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchH
Q 040741 290 ----GIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGES 365 (457)
Q Consensus 290 ----~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (457)
++. ...+....+.....+ +.+++..++.+++++++.+.|.+ + ++.+...+.........+.+...+.+.
T Consensus 221 ~~~~g~~-~~~~~~~aa~~~~~l----~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (367)
T 3nyt_A 221 HIRVGVN-SRLDTLQAAILLPKL----EIFEEEIALRQKVAAEYDLSLKQ-V-GIGTPFIEVNNISVYAQYTVRMDNRES 293 (367)
T ss_dssp ECSCCCB-CCCCHHHHHHHHHHH----HTHHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCCTTEECCCSSEEEECSSHHH
T ss_pred eeccCcC-CCccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcc-C-CeeccCCCCCCceeeEEEEEEeCCHHH
Confidence 111 122222222222222 34567778888899999999998 5 454433322211222222333235667
Q ss_pred HHhcc--cCeEecccCccCCCCCChhH--HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741 366 LLMGL--KEVAVSSGSACTSASLEPSY--VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ 429 (457)
Q Consensus 366 ~~~~l--~~i~~~~g~~~~~~~~~~~~--~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~ 429 (457)
+...| +||.++.+..+. ....|.+ ....++..+....+.||++++..+|++||+++++.+++.
T Consensus 294 l~~~L~~~GI~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 294 VQASLKAAGVPTAVHYPIP-LNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHHHHHHHTCCCBCSCSSC-GGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHCCCceeccCCCc-cccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 77777 588777664211 1111111 001111222334589999999999999999999998753
No 131
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.96 E-value=1.4e-29 Score=251.06 Aligned_cols=343 Identities=15% Similarity=0.115 Sum_probs=232.1
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK 136 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~ 136 (457)
+.+.|..+.+ .+++++.+++.+.+...+-. ...+...++++.+++++|.+ ++++++|||+|++++++
T Consensus 23 ~~~~l~~~~p-~~~~~~~~a~~~~~~~~~~~----------~~~~~~~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~ 89 (391)
T 3dr4_A 23 DLPRISVAAP-RLDGNERDYVLECMDTTWIS----------SVGRFIVEFEKAFADYCGVK--HAIACNNGTTALHLALV 89 (391)
T ss_dssp -----CCCCC-CCCSSHHHHHHHHHHHTCCS----------SCSHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHH
T ss_pred CCceeccCCC-CCCHHHHHHHHHHHHcCCcc----------CCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHH
Confidence 4455655444 56788999999887653211 01257889999999999986 59999999999999999
Q ss_pred Hh-hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741 137 GV-MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP 214 (457)
Q Consensus 137 ~~-~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~ 214 (457)
++ . ++|++|+++.++|+++..+++.. |++++.++++ .++.+|++++++++++++++|++ +|++|.+.|
T Consensus 90 ~~~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~---~n~tG~~~~ 159 (391)
T 3dr4_A 90 AMGI----GPGDEVIVPSLTYIASANSVTYC---GATPVLVDNDPRTFNLDAAKLEALITPRTKAIMP---VHLYGQICD 159 (391)
T ss_dssp HHTC----CTTCEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCGGGSGGGCCTTEEEECC---BCGGGCCCC
T ss_pred HcCC----CCcCEEEECCCchHHHHHHHHHC---CCEEEEEecCccccCcCHHHHHHhcCCCceEEEE---ECCCCChhh
Confidence 98 5 88999999999999998887765 9999999998 56789999999999999988874 568999999
Q ss_pred hHHHHHHHHhcCCcEEEehhhhcCCCcccC--CCCcccEEEec--cccccCCCCceEEEEecC-CCccccccccCCccc-
Q 040741 215 MEEIGQICKEFKIPFHTDAAQALGKIPVDV--EKWNVSLMSLS--GHKIYGPKGVGALYMRRR-PRIRVEPLINGGGQE- 288 (457)
Q Consensus 215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~--~~~~~Di~~~s--~~K~~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~- 288 (457)
+++|.++|++||+++|+|++|+.|....+. ... .|+.++| .+|.+++..+|+++.+++ ..+++.....++...
T Consensus 160 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~ 238 (391)
T 3dr4_A 160 MDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL-GDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPN 238 (391)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTT
T ss_pred HHHHHHHHHHcCCEEEEECcccccceECCeeeccc-CCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999987654332 222 2555555 569666443577777654 333444333322110
Q ss_pred cccc---cC-CCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC--CCC--cccceEEEEEc
Q 040741 289 RGIR---SG-TLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGS--MER--RYIGNLNLSFA 359 (457)
Q Consensus 289 ~~~~---~~-t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~--~~~~~~~~~~~ 359 (457)
..+. .+ ... ...+.+++... ...+++..++.+++++++.+.|.+ + ++.+... +.. .....+.+.++
T Consensus 239 ~~~~~~~~g~~~~---~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~i~~~ 313 (391)
T 3dr4_A 239 RRYWFPIVGFNYR---MTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLAR-L-GNRVTKPHVALTGRHVFWMYTVRLG 313 (391)
T ss_dssp STTCCSSCCCBCB---CCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGG-G-TTSEECCCCCTTSCCCCSSEEEEEC
T ss_pred CcccccccccccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-CccccCcCCCCCCcceeEEEEEEEC
Confidence 0000 00 011 11222233222 235788888999999999999999 6 7777654 222 22223445554
Q ss_pred ---cccchHHHhcc--cCeEecccC---ccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741 360 ---YVEGESLLMGL--KEVAVSSGS---ACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 360 ---~~~~~~~~~~l--~~i~~~~g~---~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~ 430 (457)
+.+..++...| +||.+.+|. .|.+.... +....++.......+.||++++..+|+||||+++++|++++
T Consensus 314 ~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 314 EGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAH--LATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp SSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGG--GCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred CccchhHHHHHHHHHHCCCceeecCCccccChhhhh--cCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 24466777777 699888775 33321100 00000111112234799999999999999999999998754
No 132
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.96 E-value=4.8e-29 Score=250.21 Aligned_cols=339 Identities=14% Similarity=0.110 Sum_probs=233.7
Q ss_pred CCcEEecCCCCCCCCHHHHHHHHHHHhhcc-CCC-CCCccchhhhHHHHHHHHHHHHHHHhC--------CCCCcEEEeC
Q 040741 56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRY-GNP-HSRTHLFGWESEVAVETARSQIADLIG--------ASPKEIIFTS 125 (457)
Q Consensus 56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~-~~p-~~~~~~~~~~~~~~~~~~~~~la~~~g--------~~~~~i~~t~ 125 (457)
.+.+.|+.+.+...++.+.+++.+...... .+. ........|.......++++.++++++ ++++++++++
T Consensus 36 ~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~ 115 (428)
T 1iay_A 36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAG 115 (428)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEE
T ss_pred CceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEcc
Confidence 456778766666556778888775421000 000 000000011111124567777777776 6778899999
Q ss_pred ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCC------Cc
Q 040741 126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRP------DT 197 (457)
Q Consensus 126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~------~t 197 (457)
|+|+++.++++++. ++|+.|++..+.|.++...+. ...|.+++.++.+. ++.+|++++++++++ ++
T Consensus 116 G~~~ai~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~~--~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 189 (428)
T 1iay_A 116 GATGANETIIFCLA----DPGDAFLVPSPYYPAFNRDLR--WRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKV 189 (428)
T ss_dssp HHHHHHHHHHHHHC----CTTCEEEEESSCCTTHHHHTT--TTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCE
T ss_pred ChHHHHHHHHHHhC----CCCCeEEEccCCCcchHHHHH--HhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCce
Confidence 99999999999988 899999999999998875432 23499999998863 346899999998863 68
Q ss_pred eEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---c-ccC---CC------Cccc--EEEeccccc
Q 040741 198 GLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---P-VDV---EK------WNVS--LMSLSGHKI 259 (457)
Q Consensus 198 ~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~-~~~---~~------~~~D--i~~~s~~K~ 259 (457)
++|++++++||+|.+.| +++|.++|++||+++|+|++|+.+.. . .++ .. ++.| +++.|+||.
T Consensus 190 ~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~ 269 (428)
T 1iay_A 190 KGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKD 269 (428)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTT
T ss_pred EEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhh
Confidence 99999999999999999 99999999999999999999985321 1 111 11 1256 889999998
Q ss_pred cCCCC--ceEEEEe-cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHH
Q 040741 260 YGPKG--VGALYMR-RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA---KKEMDYDHKRITALHDRLLNGI 333 (457)
Q Consensus 260 ~g~~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~---~~~~~~~~~~~~~~~~~l~~~l 333 (457)
+|.+| +|+++++ ++..+++.... ...+.+.....++..+++.. .+.+++..++++++++++.+.|
T Consensus 270 ~g~~Glr~G~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 340 (428)
T 1iay_A 270 MGLPGFRVGIIYSFNDDVVNCARKMS---------SFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGL 340 (428)
T ss_dssp SSCGGGCEEEEEESCHHHHHHHHHHH---------TTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEEeCCHHHHHHHHHHH---------hcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88666 6999984 44444443221 11245556666665566432 2346788888999999999999
Q ss_pred hhcCCCeEEeCCCCCcccceEEEEEccc-------cchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCC
Q 040741 334 KEKLDGVVVNGSMERRYIGNLNLSFAYV-------EGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAH 403 (457)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~ 403 (457)
.+ + ++.+..+. .+.++.+.++.. ....+...| + ||.+.+|..|... ..
T Consensus 341 ~~-~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~-----------------~~ 398 (428)
T 1iay_A 341 EV-V-GIKCLKNN---AGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQ-----------------EP 398 (428)
T ss_dssp HH-T-TCCBCCCS---SSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS-----------------SS
T ss_pred Hh-c-CCcccCCC---eeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCC-----------------CC
Confidence 98 5 66554321 244455565432 223555555 4 9999988755321 13
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 404 TSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 404 ~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
+++||+++ .++++++++++++|++++++
T Consensus 399 ~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 399 GWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp SEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence 79999998 57899999999999998764
No 133
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.96 E-value=1.4e-28 Score=248.30 Aligned_cols=340 Identities=13% Similarity=0.171 Sum_probs=222.9
Q ss_pred EecCCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHH-HHHHHHHHHHhCCCCCc---EEEeCChHHHHHH
Q 040741 60 YLDMQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAV-ETARSQIADLIGASPKE---IIFTSGATESNNV 133 (457)
Q Consensus 60 ~l~~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~-~~~~~~la~~~g~~~~~---i~~t~g~T~a~~~ 133 (457)
..-.+++++++++|+++|...+.+.+ |+|.++ +..|....+.+ ..+++++++++|+++++ .++++|||+|+.+
T Consensus 57 i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r-~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~ 135 (490)
T 2a7v_A 57 LELIASENFCSRAALEALGSCLNNKYSEGYPGKR-YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLA 135 (490)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHH
T ss_pred ceEECCCCCCCHHHHHHHHHHHcCCCccCCCccc-ccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHH
Confidence 34456888999999999999998877 677763 32333332233 35669999999998753 4667789999999
Q ss_pred HHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-----HHHhcCc--EEEEEeCC-CCCCCCHHHHHHhcC-CCceEEEEec
Q 040741 134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-----HLQQEGF--EITYLPVG-ADGIVNLDELRAAIR-PDTGLISVMA 204 (457)
Q Consensus 134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-----~~~~~G~--~v~~v~~~-~~~~~d~~~le~~i~-~~t~li~i~~ 204 (457)
++.+++ ++||+|+++.++|.++..... .+...|. +++.++++ .++.+|+++++++++ .++++|+++.
T Consensus 136 al~al~----~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~ 211 (490)
T 2a7v_A 136 VYTALL----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGT 211 (490)
T ss_dssp HHHHHC----CSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECC
T ss_pred HHHHHc----CCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcC
Confidence 999998 899999999998876432110 1112244 34455555 568999999999986 4688888876
Q ss_pred cccccccccChHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCCCcccEEEecccc-ccCCCCceEEEEecCCC---
Q 040741 205 VNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPR--- 275 (457)
Q Consensus 205 ~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~--- 275 (457)
++| |...|+++|.++|++||+++|+|+||+.|.. +..+. ++|++++|+|| +.||.| |+++++++.+
T Consensus 212 s~~--~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~ 286 (490)
T 2a7v_A 212 SAY--ARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKAVD 286 (490)
T ss_dssp SSC--CSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEEECSEEEEE
T ss_pred CCC--CCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCccccc-hheeeccchhccc
Confidence 665 4678999999999999999999999975432 22222 58999999999 557886 9999987521
Q ss_pred ------------ccccccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEE
Q 040741 276 ------------IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVV 342 (457)
Q Consensus 276 ------------~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 342 (457)
.+++.....+ ..|+++...++++..|+..+.. ++++..++..++++++.+.|.+ .|+.+
T Consensus 287 ~~~~~~~~~~l~~~i~~~~~~g------~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~--~G~~v 358 (490)
T 2a7v_A 287 PKTGREIPYTFEDRINFAVFPS------LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSL 358 (490)
T ss_dssp TTTEEEEECCCHHHHHHHHTTT------TCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEE
T ss_pred ccccchhhHHHHHHHHHHhccc------CCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--cCcEE
Confidence 1122111111 2346778888888888877753 5788889999999999999999 48888
Q ss_pred eCCCCCcccceEEEEEc--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecC----CCC
Q 040741 343 NGSMERRYIGNLNLSFA--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIG----RFT 414 (457)
Q Consensus 343 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~----~~~ 414 (457)
...... ...+.+.+. +.++..+...| .||.+..+..+.. ......+.|||+.. +..
T Consensus 359 ~~~~t~--t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d--------------~~p~~~~~iRig~~a~t~~g~ 422 (490)
T 2a7v_A 359 VSGGTD--NHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD--------------RSAITPGGLRLGAPALTSRQF 422 (490)
T ss_dssp GGGSCS--SSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTC--------------CCSSSCSEEEEESHHHHHTTC
T ss_pred ecCCCC--CeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCC--------------CCCCCCCceEecccccccCCC
Confidence 642211 344455554 34556666666 5888875532210 01223478999763 356
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 040741 415 TEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 415 t~edid~~~~~l~~~~~~~ 433 (457)
+++|++++++.|.++++..
T Consensus 423 ~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 423 REDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 8999999999999998754
No 134
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.96 E-value=8.6e-28 Score=238.09 Aligned_cols=335 Identities=16% Similarity=0.117 Sum_probs=233.9
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-hhhhcCC
Q 040741 67 TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV-MHFYKDK 145 (457)
Q Consensus 67 ~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~-~~~~~~~ 145 (457)
..+++++++++.+.+.+.+-. . .+...++++.+++++|.+ ++++++|||+|++++++++ . ++
T Consensus 16 p~~~~~~~~a~~~~~~~~~~~---------~--~~~~~~l~~~la~~~~~~--~~~~~~~gt~al~~~~~~~~~----~~ 78 (393)
T 1mdo_A 16 PAMGAEELAAVKTVLDSGWIT---------T--GPKNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALGI----GE 78 (393)
T ss_dssp CCCCHHHHHHHHHHHHHTCCS---------S--SHHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTC----CT
T ss_pred CCCCHHHHHHHHHHHhcCCcC---------C--ChHHHHHHHHHHHHhCCC--cEEEecChHHHHHHHHHHcCC----CC
Confidence 346789999999988653111 1 157889999999999975 5999999999999999998 6 78
Q ss_pred CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHh
Q 040741 146 KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE 224 (457)
Q Consensus 146 g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~ 224 (457)
|++|+++.++|+++..+++.. |++++.++.+.+ +.+|++++++++++++++|++++ ++|.+.++++|.++|++
T Consensus 79 gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~---~~G~~~~~~~i~~l~~~ 152 (393)
T 1mdo_A 79 GDEVITPSMTWVSTLNMIVLL---GANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGER 152 (393)
T ss_dssp TCEEEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHH
T ss_pred CCEEEeCCCccHhHHHHHHHC---CCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEeC---CCCCcCCHHHHHHHHHH
Confidence 999999999999998777655 999999998854 67999999999998899888764 69999999999999999
Q ss_pred cCCcEEEehhhhcCCCcccCCCCc-ccEEEeccc--cccCCCCceEEEEe-cCCCccccccccCCccc-----------c
Q 040741 225 FKIPFHTDAAQALGKIPVDVEKWN-VSLMSLSGH--KIYGPKGVGALYMR-RRPRIRVEPLINGGGQE-----------R 289 (457)
Q Consensus 225 ~~v~li~D~a~~~g~~~~~~~~~~-~Di~~~s~~--K~~g~~G~G~l~~~-~~~~~~~~~~~~~~~~~-----------~ 289 (457)
+|+++|+|++|+.|.... ....+ .|++++|+| |++++..+|+++.+ ++..+++.+....+... .
T Consensus 153 ~~~~li~D~a~~~g~~~~-~~~~~~~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 231 (393)
T 1mdo_A 153 YGIPVIEDAAHATGTSYK-GRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAP 231 (393)
T ss_dssp HTCCBCEECTTCTTCEET-TEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------
T ss_pred cCCeEEEECccccCCeEC-CeecCCCCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccc
Confidence 999999999999775432 22234 899999999 86654446888886 45555554433222110 0
Q ss_pred cc---ccCC-CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC--C-cccceEEEEEc---
Q 040741 290 GI---RSGT-LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME--R-RYIGNLNLSFA--- 359 (457)
Q Consensus 290 ~~---~~~t-~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~-~~~~~~~~~~~--- 359 (457)
.+ ..|+ .....+.+. .++. ..+.+++..++.+++++++.+.|.+ ++ +++...+. . ....++.+.++
T Consensus 232 ~~~~~~~g~~~~~~~~~~a-~~~~-~l~~~~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~~ 307 (393)
T 1mdo_A 232 QAEVLAPGYKYNLPDLNAA-IALA-QLQKLDALNARRAAIAAQYHQAMAD-LP-FQPLSLPSWEHIHAWHLFIIRVDEAR 307 (393)
T ss_dssp CCEESSCCCBCCCCHHHHH-HHHH-HHHTHHHHHHHHHHHHHHHHHHHHT-SS-CEECCCCSSCEECCCSCEEEECCHHH
T ss_pred cccccccCccCCCCHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHhc-CC-cccccCCCCCCCceeEEEEEEecccc
Confidence 01 1121 111112111 1111 1234677788888899999999998 66 77754321 1 12334556665
Q ss_pred -cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHc---CCC--ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741 360 -YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRAL---GVD--EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE 431 (457)
Q Consensus 360 -~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~---g~~--~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~ 431 (457)
+.+..++...| +||.+.+|..|... .+.+.. .+ .+. .....+.|||+++..+|++|+++++++|+++++
T Consensus 308 ~~~~~~~l~~~l~~~gi~v~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 384 (393)
T 1mdo_A 308 CGITRDALMASLKTKGIGTGLHFRAAHT--QKYYRE-RFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG 384 (393)
T ss_dssp HSSCHHHHHHHHHHTTBCCBCCCCCGGG--SHHHHH-HSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHhCCCCcccccCcccc--Chhhhc-cCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 34566777666 69998888766321 111111 00 000 001236899999999999999999999998876
Q ss_pred H
Q 040741 432 K 432 (457)
Q Consensus 432 ~ 432 (457)
.
T Consensus 385 ~ 385 (393)
T 1mdo_A 385 Q 385 (393)
T ss_dssp -
T ss_pred c
Confidence 4
No 135
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.96 E-value=1.8e-29 Score=248.74 Aligned_cols=336 Identities=14% Similarity=0.117 Sum_probs=225.5
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHH-HHHhCCCCCcEEEeCChHHHHHHHHHHh-hhhhcCC
Q 040741 68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQI-ADLIGASPKEIIFTSGATESNNVSIKGV-MHFYKDK 145 (457)
Q Consensus 68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l-a~~~g~~~~~i~~t~g~T~a~~~al~~~-~~~~~~~ 145 (457)
+.++++++++.+.+.+.+-.+ ++ +...++++.+ ++++|. .+++++++|||+|+++++.++ . ++
T Consensus 13 ~~~~~i~~a~~~~~~~~~~~~------~~----~~~~~l~~~~~a~~~g~-~~~~v~~~sgt~al~~al~~l~~----~~ 77 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASHIYTN------YG----PINQRFEQTIMSGFFQN-RGAVTTVANATLGLMAAIQLKKR----KK 77 (377)
T ss_dssp CCGGGGHHHHHHHHHHTCCSS------SC----HHHHHHHHHHHHHTSTT-CSEEEEESCHHHHHHHHHHHHSC----TT
T ss_pred CCcHHHHHHHHHHHHcCCccc------CC----HHHHHHHHHHHHHHhCC-CCeEEEeCCHHHHHHHHHHHcCC----CC
Confidence 556788899998887532110 11 4678999999 999993 346999999999999999987 5 89
Q ss_pred CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhc-CCC--ceEEEEeccccccccccChHHHHHH
Q 040741 146 KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAI-RPD--TGLISVMAVNNEIGVIQPMEEIGQI 221 (457)
Q Consensus 146 g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i-~~~--t~li~i~~~~~~~G~~~~l~~i~~l 221 (457)
||+||++.++|.++..++... |+++++++++ .++.+|++++++++ +++ |++|+ ++|++|...|+++|.++
T Consensus 78 Gd~Vi~~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~l 151 (377)
T 3ju7_A 78 GKYALMPSFTFPATPLAAIWC---GLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEEL 151 (377)
T ss_dssp CCEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHH
T ss_pred cCEEEECCCCcHHHHHHHHHc---CCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHH
Confidence 999999999999998887665 9999999998 56789999999998 666 88887 44679999999999999
Q ss_pred HHhcCCcEEEehhhhcCCCcccCCCC-----cccEEEeccccccCCCCceEEEEecC-CCccccccccCCc------ccc
Q 040741 222 CKEFKIPFHTDAAQALGKIPVDVEKW-----NVSLMSLSGHKIYGPKGVGALYMRRR-PRIRVEPLINGGG------QER 289 (457)
Q Consensus 222 ~~~~~v~li~D~a~~~g~~~~~~~~~-----~~Di~~~s~~K~~g~~G~G~l~~~~~-~~~~~~~~~~~~~------~~~ 289 (457)
|+ +|+++|+|++|++|.... .... ++++++++.+|.+++...|+++.+++ +.++++.....+. ...
T Consensus 152 a~-~~~~vi~D~a~a~g~~~~-~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 229 (377)
T 3ju7_A 152 EK-KGVPVVVDAAPGFGLMNG-GMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMM 229 (377)
T ss_dssp HH-TTCCBEEECTTCTTCEET-TEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSS
T ss_pred Hh-cCCEEEEECCCccCCeEC-CEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCCceeec
Confidence 99 999999999999886532 1111 34455555679776544577776643 3344444433221 112
Q ss_pred ccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE--EeCCC-CCcccceEEEEEcc-ccchH
Q 040741 290 GIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV--VNGSM-ERRYIGNLNLSFAY-VEGES 365 (457)
Q Consensus 290 ~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~-~~~~~~~~~~~~~~-~~~~~ 365 (457)
++.++..+.....++ .. .+.++...++.+++++++.+.|.+ ++++. +.... ......++.+.++. .+.++
T Consensus 230 g~~~~~~~~~aa~~~-~~----l~~l~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T 3ju7_A 230 GFNCKMSEYAAAIGI-AT----MKKWDDKLKERTRISEWYKQLLQS-NGLMKKGWQLQKTEAVIQQFMPILCPEEVRNKQ 303 (377)
T ss_dssp CCBCCCCHHHHHHHH-HH----HHTHHHHHHHHHHHHHHHHHHHHH-TTTTTTTCBCCCCSCBCCSSEEEECCTTSCHHH
T ss_pred cccCCCCHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHhcC-CCCccccccCCCCCcceEEEEEEEeCChhhHHH
Confidence 222222222222211 11 245678888889999999999988 66532 11111 11222233444442 23677
Q ss_pred HHhcc--cCeEecccC--ccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 366 LLMGL--KEVAVSSGS--ACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 366 ~~~~l--~~i~~~~g~--~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
+...| +||.++.+. .|+.....+++....++..+....+.||++++..+|++|++++++.|++++..
T Consensus 304 l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 304 VIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp HHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred HHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 77777 688887765 34322111111111222333445689999999999999999999999988765
No 136
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.96 E-value=2.3e-27 Score=233.58 Aligned_cols=318 Identities=18% Similarity=0.227 Sum_probs=222.0
Q ss_pred CCcEEecCCCCCC------CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQATTP------VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~~~------~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+..|+|+.+..+ .++++.+++.+.+... +++.. . |. .....++++++++++|+ ++++++++|||+
T Consensus 26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~-~~~~~-~--y~---~~~~~~l~~~la~~~g~-~~~v~~~~g~t~ 97 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKL-LHVSN-L--YE---NPWQEELAHKLVKHFWT-EGKVFFANSGTE 97 (375)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHC-SCCCT-T--BC---CHHHHHHHHHHHHTSSS-CEEEEEESSHHH
T ss_pred CCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhc-cccCc-c--cC---CHHHHHHHHHHHhhcCC-CCeEEEeCchHH
Confidence 4557888875432 7899999999998653 23222 1 11 13567899999999998 367999999999
Q ss_pred HHHHHHHHhhhhh--cCCC-CEEEEcCCCCcchHHHHHHHHh-----cCcE-----EEEEeCCCCCCCCHHHHHHhcCCC
Q 040741 130 SNNVSIKGVMHFY--KDKK-RHVITTQTEHKCVLDSCRHLQQ-----EGFE-----ITYLPVGADGIVNLDELRAAIRPD 196 (457)
Q Consensus 130 a~~~al~~~~~~~--~~~g-~~vi~~~~~h~~~~~~~~~~~~-----~G~~-----v~~v~~~~~~~~d~~~le~~i~~~ 196 (457)
|+.++++++..+. .++| ++|++..+.|......+..+.. .|.. +..++. .|+++++++++++
T Consensus 98 a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~ 172 (375)
T 2eh6_A 98 SVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDEE 172 (375)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhcCC
Confidence 9999998642111 1456 8999999887766555444310 1222 444443 4899999999999
Q ss_pred ceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--ccCCCCc--ccEEEeccccccC-CCCce
Q 040741 197 TGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VDVEKWN--VSLMSLSGHKIYG-PKGVG 266 (457)
Q Consensus 197 t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~~~~~~--~Di~~~s~~K~~g-~~G~G 266 (457)
+++|++++++|++|.+.| +++|.++|++||+++|+|++|+ ++..+ +++...+ +|++++| |.+| +.++|
T Consensus 173 ~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G 250 (375)
T 2eh6_A 173 TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIG 250 (375)
T ss_dssp EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCE
T ss_pred eEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeE
Confidence 999999999999999988 9999999999999999999998 55432 2233334 7887555 9554 45699
Q ss_pred EEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC
Q 040741 267 ALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM 346 (457)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 346 (457)
+++++++..+++.+...+. ..++ +.....++.++++... +..++.+++++++.+.|++ ++...+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~~L~~-~~~~~~~~-- 316 (375)
T 2eh6_A 251 AILAREEVAQSFTPGSHGS------TFGG-NPLACRAGTVVVDEVE----KLLPHVREVGNYFKEKLKE-LGKGKVKG-- 316 (375)
T ss_dssp EEEEEHHHHTTCCTTSCCC------SSTT-CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-TTSSEEEE--
T ss_pred EEEEcHHHHhhhcCCCCCC------CCCC-CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HhcCCceE--
Confidence 9999987666655422211 1223 4444444445555433 6778888899999999988 65422222
Q ss_pred CCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741 347 ERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE 424 (457)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~ 424 (457)
...++.+.++. +..++...| +||.+.++. .+.+||+++..++++|++++++
T Consensus 317 ---~g~~~~~~~~~-~~~~~~~~l~~~gi~~~~~~-----------------------~~~iRi~~~~~~~~~~i~~~~~ 369 (375)
T 2eh6_A 317 ---RGLMLGLELER-ECKDYVLKALEKGLLINCTA-----------------------GKVLRFLPPLIIQKEHIDRAIS 369 (375)
T ss_dssp ---ETTEEEEECSS-CCHHHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHHHHHH
T ss_pred ---EEEEEEEEEcC-cHHHHHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHH
Confidence 14455555543 345666655 688776541 2799999998899999999999
Q ss_pred HHHHH
Q 040741 425 LTVKQ 429 (457)
Q Consensus 425 ~l~~~ 429 (457)
+|+++
T Consensus 370 ~l~~~ 374 (375)
T 2eh6_A 370 VLREI 374 (375)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
No 137
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.96 E-value=1.2e-28 Score=246.89 Aligned_cols=339 Identities=13% Similarity=0.114 Sum_probs=233.5
Q ss_pred CCcEEecCCCCC----CCCHHHHHHHH--HHHhhccCCCCCCccchhh-hHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741 56 GRPLYLDMQATT----PVDPRVLDAML--PFYLSRYGNPHSRTHLFGW-ESEVAVETARSQIADLIGASPKEIIFTSGAT 128 (457)
Q Consensus 56 ~~~i~l~~~~~~----~~~~~v~~a~~--~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T 128 (457)
...+.|..+.+. +.++++.+++. +.+.. + .....| .......++++.++++++++++++++|+|++
T Consensus 25 ~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~--~-----~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~ 97 (423)
T 3ez1_A 25 GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMD--G-----LDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSS 97 (423)
T ss_dssp TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEET--T-----EETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCH
T ss_pred CceEecCCCCCChHhCCCcHHHHHHHhhhHHhhc--c-----hhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcH
Confidence 345666665555 35667777775 33321 0 001112 1123467899999999999988999999999
Q ss_pred HHHH--HHHHHhhhhhcC--C---------CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc--
Q 040741 129 ESNN--VSIKGVMHFYKD--K---------KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAI-- 193 (457)
Q Consensus 129 ~a~~--~al~~~~~~~~~--~---------g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i-- 193 (457)
++++ ++++++. . + +++|++..+.|..+...++.. |.+++.++.+.++ +|+++|++++
T Consensus 98 ~al~~~~~~~~l~----~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~g-~d~~~l~~~l~~ 169 (423)
T 3ez1_A 98 LELQGLVLTFALL----HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL---GFELLTVDMQSDG-PDVDAVERLAGT 169 (423)
T ss_dssp HHHHHHHHHHHHH----TCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHH---TCEEEEEEEETTE-ECHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh----ccCCCccccccCCCCEEEEcCCCcHHHHHHHHHc---CCEEEeccCCCCC-CCHHHHHHHHhh
Confidence 9998 8888887 5 6 599999999999998887776 9999999988665 8999999999
Q ss_pred CCCceEEEE-eccccccccccChH---HHHHHH-HhcCCcEEEehhhhcCCC-------cccC-------CCCcccEEEe
Q 040741 194 RPDTGLISV-MAVNNEIGVIQPME---EIGQIC-KEFKIPFHTDAAQALGKI-------PVDV-------EKWNVSLMSL 254 (457)
Q Consensus 194 ~~~t~li~i-~~~~~~~G~~~~l~---~i~~l~-~~~~v~li~D~a~~~g~~-------~~~~-------~~~~~Di~~~ 254 (457)
++++++|++ ++++||+|.+.|.+ +|+++| ++||+++|+|++|+.... ..++ ...+.++++.
T Consensus 170 ~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 249 (423)
T 3ez1_A 170 DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFA 249 (423)
T ss_dssp CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEE
T ss_pred CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEe
Confidence 678888865 58999999999966 788888 999999999999984211 1111 1335679999
Q ss_pred ccccc-cCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHH
Q 040741 255 SGHKI-YGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI----AKKEMDYDHKRITALHDRL 329 (457)
Q Consensus 255 s~~K~-~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~----~~~~~~~~~~~~~~~~~~l 329 (457)
|++|. +++.++|+++++++..+++....... ....+.....++..+++. ....+.+..+.++++.+.+
T Consensus 250 S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 322 (423)
T 3ez1_A 250 STSKITFAGAGLGFVASSEDNIRWLSKYLGAQ-------SIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAV 322 (423)
T ss_dssp ESTTTSCSSSSCEEEEECHHHHHHHHHHHHHS-------CSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhccCCcceEEEEeCHHHHHHHHHHHhhh-------ccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 99994 44446999999877655554433211 124455555555455543 1233555555555555555
Q ss_pred HHHHhhc---CC-CeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecc-cCccCCCCCChhHHHHHcCCCccCC
Q 040741 330 LNGIKEK---LD-GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSS-GSACTSASLEPSYVLRALGVDEDMA 402 (457)
Q Consensus 330 ~~~l~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~-g~~~~~~~~~~~~~l~~~g~~~~~~ 402 (457)
.+.|.+. ++ ++.+..+. .+.++.+.++..+...+...+ +||.+.+ |..|... ....
T Consensus 323 ~~~l~~~l~~~~~~~~~~~p~---~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~--------------~~~~ 385 (423)
T 3ez1_A 323 DEVLRAELGEGGEYATWTLPK---GGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAG--------------QDPH 385 (423)
T ss_dssp HHHHHHHHTTTTSSEEECCCS---BSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTT--------------CCSS
T ss_pred HHHHHHhcCcCCCceEEeCCC---ccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCC--------------CCCC
Confidence 5555432 33 36665432 244566677644455666555 6999998 5544321 1123
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 403 HTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 403 ~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
.++|||+++.. +++++++++++|+++++++.
T Consensus 386 ~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 386 NRNLRLAPTRP-PVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp SCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 48999999766 89999999999999998765
No 138
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.96 E-value=7.5e-28 Score=239.77 Aligned_cols=306 Identities=12% Similarity=0.099 Sum_probs=225.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCc
Q 040741 93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGF 171 (457)
Q Consensus 93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~ 171 (457)
+.|+....+...+++++++++.|.+ ++++++||++|+.++++++. ++||+|+++.+.|.++...++. ++..|.
T Consensus 73 ~~y~r~~~p~~~~l~~~la~~~g~~--~~~~~~sG~~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~ 146 (414)
T 3ndn_A 73 YVYSRYGNPTVSVFEERLRLIEGAP--AAFATASGMAAVFTSLGALL----GAGDRLVAARSLFGSCFVVCSEILPRWGV 146 (414)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEESCCCHHHHHHHHTHHHHTTC
T ss_pred cCcCCCCChHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCccchHHHHHHHHHHHcCc
Confidence 3444444578899999999999974 58999999999999999987 8999999999999998877654 355699
Q ss_pred EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741 172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL 251 (457)
Q Consensus 172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di 251 (457)
++++++.+ |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+..... ...++|+
T Consensus 147 ~~~~v~~~-----d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~-~~~g~di 220 (414)
T 3ndn_A 147 QTVFVDGD-----DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQG-FPLGVDV 220 (414)
T ss_dssp EEEEECTT-----CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCC-GGGTCSE
T ss_pred EEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCc-hhcCCCe
Confidence 99999876 89999999999999999999999999999999999999999999999999986643222 2457899
Q ss_pred EEeccccccCCCC---ceEEEEecCCCc-cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741 252 MSLSGHKIYGPKG---VGALYMRRRPRI-RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD 327 (457)
Q Consensus 252 ~~~s~~K~~g~~G---~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~ 327 (457)
++.|++|++|+.| +|+++++++.+. ++...... ..++.++...+.+.. ..+.+..+.++..++++
T Consensus 221 v~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~-------~g~~~~~~~a~~~~~----~l~~l~~r~~~~~~~a~ 289 (414)
T 3ndn_A 221 VVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRH-------TGPAMSAFNAWVLLK----GLETLAIRVQHSNASAQ 289 (414)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHH-------HCCCCCHHHHHHHHH----HGGGHHHHHHHHHHHHH
T ss_pred EeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 9999999887765 799998876544 33322211 111333332222211 12345667778888999
Q ss_pred HHHHHHhhcCCCeEEeCCCC--------------CcccceEEEEEccc------cchHHHhcc--cCeEecccCccCC--
Q 040741 328 RLLNGIKEKLDGVVVNGSME--------------RRYIGNLNLSFAYV------EGESLLMGL--KEVAVSSGSACTS-- 383 (457)
Q Consensus 328 ~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~------~~~~~~~~l--~~i~~~~g~~~~~-- 383 (457)
++.+.|++ .|.+..+..+. ...++++.+.+++. +...++..+ .++.++.|..++.
T Consensus 290 ~l~~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~ 368 (414)
T 3ndn_A 290 RIAEFLNG-HPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVT 368 (414)
T ss_dssp HHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEEE
T ss_pred HHHHHHhc-CCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCceee
Confidence 99999998 78875432221 12467788888642 234566666 4677777876543
Q ss_pred ------CCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741 384 ------ASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 384 ------~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~ 430 (457)
....+.....+.|+.+ +.||++++. |+++.+++.|++++
T Consensus 369 ~p~~~~~~~~~~~~~~~~g~~~----~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 369 HPATTTHRAMGPEGRAAIGLGD----GVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp CGGGTTTCTTHHHHHHHTTCCT----TEEEEECCS----SCHHHHHHHHHHHH
T ss_pred CccccccccCCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHhh
Confidence 1223444566678775 899999996 67777777777765
No 139
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.96 E-value=9.7e-29 Score=246.90 Aligned_cols=350 Identities=15% Similarity=0.126 Sum_probs=222.6
Q ss_pred CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI------GASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i~~t~g~T~ 129 (457)
.+.+.|..+.+.. .+.+.+++.+.+.+...++....+..+|.......++++.+++++ +++++++++|+|+|+
T Consensus 31 ~~~i~l~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~ 109 (417)
T 3g7q_A 31 PGAIMLGGGNPAH-IPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQS 109 (417)
T ss_dssp -CCEECSCCCCCC-CHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred CCceEecCcCCCC-CChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHH
Confidence 4567777765554 233334444433322211110011112222234667888888877 567889999999999
Q ss_pred HHHHHHHHhhhhhcCCCC-----EEEEc-CCCCcchHHHHHHHH---hcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceE
Q 040741 130 SNNVSIKGVMHFYKDKKR-----HVITT-QTEHKCVLDSCRHLQ---QEGFEITYLPVGA-DGIVNLDELRAAIRPDTGL 199 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~-----~vi~~-~~~h~~~~~~~~~~~---~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~l 199 (457)
|++++++++. ++|+ +|+++ .++|..+...+.... ..+..+..++.+. ++.+|+++++ +++++++
T Consensus 110 al~~~~~~l~----~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~ 183 (417)
T 3g7q_A 110 AFFYLFNLFA----GRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGEETGM 183 (417)
T ss_dssp HHHHHHHHHS----BC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCTTEEE
T ss_pred HHHHHHHHHc----CCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--cccCceE
Confidence 9999999998 7776 89987 888888776654331 1234444444331 3457999988 7889999
Q ss_pred EEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCCCcccEEEeccccccCCCC--ceEEE
Q 040741 200 ISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEKWNVSLMSLSGHKIYGPKG--VGALY 269 (457)
Q Consensus 200 i~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~~Di~~~s~~K~~g~~G--~G~l~ 269 (457)
|++++++||+|.+.| +++|+++|++||+++|+|++|+.... .......+.++++.|++| ++.+| +|+++
T Consensus 184 v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~G~~~ 262 (417)
T 3g7q_A 184 ICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGLPGSRCGIII 262 (417)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTCTTSCCEEEE
T ss_pred EEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechh-ccCCCcceEEEE
Confidence 999999999999999 88899999999999999999974321 111122357889999999 45444 89999
Q ss_pred EecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH--HHhhHH-HHHHHHHHHHHHHHHHhhcCCC--eEEeC
Q 040741 270 MRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA--KKEMDY-DHKRITALHDRLLNGIKEKLDG--VVVNG 344 (457)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~--~~~~~~-~~~~~~~~~~~l~~~l~~~~~~--~~~~~ 344 (457)
++++..+++....... ....+.....++...++.. ...+.+ +.++++++.+++.+.|.+.+++ +.+..
T Consensus 263 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 335 (417)
T 3g7q_A 263 ANDKTITAIANMNGII-------SLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHK 335 (417)
T ss_dssp CCHHHHHHHHHHHHHH-------CCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEEC
T ss_pred eCHHHHHHHHHhhcce-------eeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeC
Confidence 8876655554433211 1133444444443444321 111222 5667777888888888764553 56654
Q ss_pred CCCCcccceEEEEEcc--ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHH
Q 040741 345 SMERRYIGNLNLSFAY--VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD 420 (457)
Q Consensus 345 ~~~~~~~~~~~~~~~~--~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid 420 (457)
+.. ..++.+.++. .+..++...+ +||.+.+|..|.+....+ .....++|||+++. ++++|+
T Consensus 336 ~~~---g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~----------~~~~~~~iRis~~~--~~~~i~ 400 (417)
T 3g7q_A 336 PEG---AIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKP----------WPHTHQCMRMNYVP--EPDKIE 400 (417)
T ss_dssp CCB---SSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSC----------CGGGGGEEEEESCS--CHHHHH
T ss_pred CCc---ceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccc----------cccCCCeEEEEecC--CHHHHH
Confidence 321 3444555653 4566777666 699999998876521100 00113799999986 899999
Q ss_pred HHHHHHHHHHHHHHh
Q 040741 421 RAIELTVKQVEKLRE 435 (457)
Q Consensus 421 ~~~~~l~~~~~~~~~ 435 (457)
+++++|+++++++..
T Consensus 401 ~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 401 AGVKILAEEIERAWR 415 (417)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987653
No 140
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.96 E-value=1.8e-27 Score=238.62 Aligned_cols=299 Identities=14% Similarity=0.084 Sum_probs=220.8
Q ss_pred HHHHHHHHHHHHHhCCCC---------CcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCc
Q 040741 101 VAVETARSQIADLIGASP---------KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGF 171 (457)
Q Consensus 101 ~~~~~~~~~la~~~g~~~---------~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~ 171 (457)
+..+.+.+.+++..|.+. +++++|+|+++|+.++++++. ++||+|++..+.|.++...++.. |.
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~~---g~ 154 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII----NPGDNVLLDEPAYSGTLQSLHPL---GC 154 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHGGG---TC
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHHHHHc---CC
Confidence 455666666667678753 579999999999999999998 89999999999999988776544 99
Q ss_pred EEEEEeCCCCCCCCHHHHHHhcC------------CCceEEEE-eccccccccccChH---HHHHHHHhcCCcEEEehhh
Q 040741 172 EITYLPVGADGIVNLDELRAAIR------------PDTGLISV-MAVNNEIGVIQPME---EIGQICKEFKIPFHTDAAQ 235 (457)
Q Consensus 172 ~v~~v~~~~~~~~d~~~le~~i~------------~~t~li~i-~~~~~~~G~~~~l~---~i~~l~~~~~v~li~D~a~ 235 (457)
+++.++.+.++ +|+++|+++++ +++++|++ ++++||+|.+.|.+ +|.++|++||+++|+|++|
T Consensus 155 ~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~ 233 (425)
T 2r2n_A 155 NIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPY 233 (425)
T ss_dssp EEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred EEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 99999887654 89999999987 45778765 78999999999855 8999999999999999999
Q ss_pred hc----CCCccc---CCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHH
Q 040741 236 AL----GKIPVD---VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGS 306 (457)
Q Consensus 236 ~~----g~~~~~---~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~ 306 (457)
+. |..... +...+.++++.|++|.+| +| +|+++++++.++++...... ...+.+.....++..
T Consensus 234 ~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~-------~~~~~~~~~q~a~~~ 305 (425)
T 2r2n_A 234 YFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQV-------STLHPSTFNQLMISQ 305 (425)
T ss_dssp GGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHT-------TTCSSCHHHHHHHHH
T ss_pred ccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHH-------hcCCCCHHHHHHHHH
Confidence 83 221112 222345688999999887 56 79999998766655543321 123566777777777
Q ss_pred HHHHH-----HHhhHHHHHHHHHHHHHHHHHHhhcCCCeE-EeCCCCCcccceEEEEEcc-ccchH-HHhcc--cCeEec
Q 040741 307 ACEIA-----KKEMDYDHKRITALHDRLLNGIKEKLDGVV-VNGSMERRYIGNLNLSFAY-VEGES-LLMGL--KEVAVS 376 (457)
Q Consensus 307 al~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l--~~i~~~ 376 (457)
+++.. .+.+++..++++++++++.+.|++.++++. +..+ .. +.++.+.++. .+..+ +...+ +||.+.
T Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p-~~--g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~ 382 (425)
T 2r2n_A 306 LLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP-AA--GMFLWIKVKGINDVKELIEEKAVKMGVLML 382 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC-SB--SSEEEEEETTCSCCHHHHHTHHHHTTEECE
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC-Cc--eEEEEEEeCCCCCHHHHHHHHHHHCCcEEe
Confidence 77653 234677888889999999999987456763 4332 22 4455666654 23444 34444 699999
Q ss_pred ccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 377 SGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 377 ~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
+|..|... .....+++||+++. .+++++++++++|++++++.
T Consensus 383 pg~~f~~~--------------~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 383 PGNAFYVD--------------SSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp EGGGGSSS--------------TTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCC--------------CCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence 99876431 11223799999984 48999999999999998653
No 141
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.96 E-value=1e-28 Score=240.60 Aligned_cols=320 Identities=22% Similarity=0.210 Sum_probs=218.2
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK 136 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~ 136 (457)
..|+|+.+.+..+++++.+++.+.... ...|+ ..+...++++++++++|.+ ++++++|||+|+.++++
T Consensus 4 ~~i~~~~~~~~~p~~~~~~a~~~~~~~--------~~~y~--~~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~~~~ 71 (347)
T 1jg8_A 4 MMIDLRSDTVTKPTEEMRKAMAQAEVG--------DDVYG--EDPTINELERLAAETFGKE--AALFVPSGTMGNQVSIM 71 (347)
T ss_dssp -CEECSCGGGCCCCHHHHHHHHTCCCC--------CGGGT--CCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHH
T ss_pred eEEEeccccCCCCCHHHHHHHhcCCCC--------CcccC--CChHHHHHHHHHHHHhCCc--eEEEecCcHHHHHHHHH
Confidence 457899888888889999888654311 01111 1246778999999999985 48999999999999998
Q ss_pred HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC------CceEEEEecccccc-
Q 040741 137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP------DTGLISVMAVNNEI- 209 (457)
Q Consensus 137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~------~t~li~i~~~~~~~- 209 (457)
++. ++||+|+++.++|.+.......+...|++++.+ .+.++.+|++++++++++ ++++|++++++||+
T Consensus 72 ~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~ 146 (347)
T 1jg8_A 72 AHT----QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSG 146 (347)
T ss_dssp HHC----CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTT
T ss_pred Hhc----CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccC
Confidence 887 899999999999977654222234459999988 555677899999999985 68999999999999
Q ss_pred ccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCCC--CcccEEEeccccccCCCCce-EEEEecCCCccccc
Q 040741 210 GVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVEK--WNVSLMSLSGHKIYGPKGVG-ALYMRRRPRIRVEP 280 (457)
Q Consensus 210 G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~--~~~Di~~~s~~K~~g~~G~G-~l~~~~~~~~~~~~ 280 (457)
|.+.| +++|.++|++||+++++|++|.++.. ..+... .+.|.+++|+||.+|++ +| +++.+++.++++..
T Consensus 147 G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~-~G~~~~~~~~~~~~~~~ 225 (347)
T 1jg8_A 147 GRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP-VGSVVVGDRDFIERARK 225 (347)
T ss_dssp SBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS-SCEEEEECHHHHHHHHH
T ss_pred CccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC-ceEEEEcCHHHHHHHHH
Confidence 99987 46888999999999999999854321 111111 25788889999976644 45 55666555444433
Q ss_pred cccCCccccccccCCC--ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE
Q 040741 281 LINGGGQERGIRSGTL--PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF 358 (457)
Q Consensus 281 ~~~~~~~~~~~~~~t~--~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (457)
..... .++. +.....+...+++. ..+. .++..++++++.+.|++ + ++.+...+ ...+++.+.+
T Consensus 226 ~~~~~-------~~~~~~~~~~~~~~~~~l~~---~~~~-~~~~~~~~~~l~~~L~~-~-~~~~~~~~--~~~~~~~~~~ 290 (347)
T 1jg8_A 226 ARKML-------GGGMRQAGVLAAAGIIALTK---MVDR-LKEDHENARFLALKLKE-I-GYSVNPED--VKTNMVILRT 290 (347)
T ss_dssp HHHHH-------TCCCSSTHHHHHHHHHHHHH---SSTT-HHHHHHHHHHHHHHHHH-H-TCBCCGGG--CCSSEEEEEC
T ss_pred HHHHc-------CCchhHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHh-c-CceeccCC--CcceEEEEEc
Confidence 22111 0111 21222222223322 2222 23344567888888887 5 55542211 1245566666
Q ss_pred c--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 359 A--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 359 ~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
+ +.+..++...| +||.+.++. .+.+||+++..++++|+++++++|++++++
T Consensus 291 ~~~~~~~~~~~~~l~~~gi~v~~~~-----------------------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 291 DNLKVNAHGFIEALRNSGVLANAVS-----------------------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp TTSSSCHHHHHHHHHHHTEECEEEE-----------------------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCEEecCC-----------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 5 34466777666 588876532 168999998889999999999999998764
No 142
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.96 E-value=6.8e-28 Score=242.10 Aligned_cols=332 Identities=15% Similarity=0.130 Sum_probs=235.2
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CCCCCcEEEeCChHHH
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GASPKEIIFTSGATES 130 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~~~i~~t~g~T~a 130 (457)
.+.|+|+.+.+. +.++.+.+++.+.+.... +.+. .+.|+ ......++++.+++++ ++++++++||+|++++
T Consensus 56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~-~~~y~--~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~a 131 (432)
T 3ei9_A 56 AQVISLGIGDTTEPIPEVITSAMAKKAHELS-TIEG-YSGYG--AEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCD 131 (432)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHHHHTT-STTT-CCCCC--CTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhccc-ccCC-ccCCC--CCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHH
Confidence 467888887666 788999999999987532 2111 11122 1124567778888875 7788899999999999
Q ss_pred HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcC---------cEEEEEeCCCCC--CCCHHHHHHhcCCCceE
Q 040741 131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEG---------FEITYLPVGADG--IVNLDELRAAIRPDTGL 199 (457)
Q Consensus 131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G---------~~v~~v~~~~~~--~~d~~~le~~i~~~t~l 199 (457)
+.+ +..+. ++||.|+++.+.|+++...++.++..| .++++++.+.++ ..|+++ .+++++
T Consensus 132 l~~-l~~l~----~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~ 201 (432)
T 3ei9_A 132 ISR-LQVMF----GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----VGRTDI 201 (432)
T ss_dssp HHH-HHHHH----CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----CCCCSE
T ss_pred HHH-HHHHc----CCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----CCCCCE
Confidence 987 56666 799999999999999999988874333 367888887432 344332 367889
Q ss_pred EEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC---CcccCC----CCcccEEEeccccccCCCC--ceE
Q 040741 200 ISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK---IPVDVE----KWNVSLMSLSGHKIYGPKG--VGA 267 (457)
Q Consensus 200 i~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~---~~~~~~----~~~~Di~~~s~~K~~g~~G--~G~ 267 (457)
|++++++||+|.+.+ +++|+++|++||+++|+|++|+.+. .+..+. ..+.++++.|++|.+|..| +|+
T Consensus 202 v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~ 281 (432)
T 3ei9_A 202 IFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGW 281 (432)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEE
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEE
Confidence 999999999999987 6677778999999999999998432 222221 1245789999999887665 899
Q ss_pred EEEecCCC--------ccccccccCCccccccccCCCChhHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHhhcCC
Q 040741 268 LYMRRRPR--------IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE-IAKKEMDYDHKRITALHDRLLNGIKEKLD 338 (457)
Q Consensus 268 l~~~~~~~--------~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 338 (457)
++++++.+ ..+..... ....+++.....++.+++. ...+.+++..++++++++++.+.|++ +
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~- 352 (432)
T 3ei9_A 282 TVIPKKLLYSDGFPVAKDFNRIIC-------TCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTS-L- 352 (432)
T ss_dssp EECCTTCBCTTSCBHHHHHHHHHH-------HSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-
T ss_pred EEEChHHhhcchHHHHHHHHHHhc-------cccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH-C-
Confidence 99987762 22211111 1223556666666555654 23345788899999999999999998 5
Q ss_pred CeEEeCCCCCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741 339 GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT 415 (457)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t 415 (457)
++.+.++.. ..++.+.+++.+..++...+ .||.+.+|..|.+ .+.++|||++. .+
T Consensus 353 g~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~-----------------~~~~~iRis~~--~~ 410 (432)
T 3ei9_A 353 GYDVYGGKN---APYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGP-----------------GGEGFVRVSAF--GH 410 (432)
T ss_dssp TCCEEECSS---SSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTEEEEECC--SC
T ss_pred CceecCCCc---ceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCC-----------------CCCCEEEEEec--CC
Confidence 776664322 34456666655556666655 3999999876643 12389999974 48
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040741 416 EAEVDRAIELTVKQVEK 432 (457)
Q Consensus 416 ~edid~~~~~l~~~~~~ 432 (457)
++++++++++|++--..
T Consensus 411 ~e~l~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 411 RENILEACRRFKQLYKH 427 (432)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999876543
No 143
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.96 E-value=2.6e-27 Score=237.59 Aligned_cols=338 Identities=9% Similarity=0.022 Sum_probs=229.3
Q ss_pred CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+..|+|+.++. ..+|++.+++.+.+.....++.+ ++. .+...++++.++++++.++++++|++|||+
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~-----~~~-~~~~~~l~~~la~~~~~~~~~v~~~~ggte 114 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFG-----GIT-HAPAIELCRKLVAMTPQPLECVFLADSGSV 114 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCS-----SEE-CHHHHHHHHHHHHHSCTTCCEEEEESSHHH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccc-----ccC-CHHHHHHHHHHHHhCCCCCCEEEEeCCHHH
Confidence 455789986654 25899999999998764332211 111 145678888999999988889999999999
Q ss_pred HHHHHHHHhhhhhc---CCCCEEEEcCCCCcc-hHHHHHHHH-----hc-----CcEEEEEeCCC------CCCCCHHHH
Q 040741 130 SNNVSIKGVMHFYK---DKKRHVITTQTEHKC-VLDSCRHLQ-----QE-----GFEITYLPVGA------DGIVNLDEL 189 (457)
Q Consensus 130 a~~~al~~~~~~~~---~~g~~vi~~~~~h~~-~~~~~~~~~-----~~-----G~~v~~v~~~~------~~~~d~~~l 189 (457)
|++++++++..+.. +++++|++..+.|.. ...+..... .. ...+..++.+. .+.+|++++
T Consensus 115 a~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 194 (429)
T 1s0a_A 115 AVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHH
Confidence 99999997653322 258889888865544 443332211 00 11355565542 245899999
Q ss_pred HHhcC---CCceEEEEecc-ccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc----ccCCCCcccEEEecc
Q 040741 190 RAAIR---PDTGLISVMAV-NNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP----VDVEKWNVSLMSLSG 256 (457)
Q Consensus 190 e~~i~---~~t~li~i~~~-~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~----~~~~~~~~Di~~~s~ 256 (457)
+++++ +++++|+++++ +|++|.+.| +++|.++|++||+++|+|++|+ +|... .+.....+|+++ +
T Consensus 195 ~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t--~ 272 (429)
T 1s0a_A 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILC--L 272 (429)
T ss_dssp HHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--E
T ss_pred HHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEEE--e
Confidence 99987 57888888888 899998887 9999999999999999999997 54321 121223467775 5
Q ss_pred ccccC-C-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040741 257 HKIYG-P-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIK 334 (457)
Q Consensus 257 ~K~~g-~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~ 334 (457)
+|.+| + .++|+++++++.++.+..... ..... ....+.++..++++.++++.+.+ +...++.+++++++.+.|+
T Consensus 273 sK~l~~G~~~iG~~~~~~~~~~~l~~~~~-~~~~~-~~t~~~n~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~L~ 348 (429)
T 1s0a_A 273 GKALTGGTMTLSATLTTREVAETISNGEA-GCFMH-GPTFMGNPLACAAANASLAILES--GDWQQQVADIEVQLREQLA 348 (429)
T ss_dssp CGGGGTSSSCCEEEEECHHHHHHHHTSTT-SSCSC-CCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHG
T ss_pred cccccCCCccceEEEeCHHHHHHhhcCCC-ccccc-CCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH
Confidence 59544 4 568999998765544432100 00000 01224577777888888887665 3567788888999999987
Q ss_pred hcC---CCeEEeCCCCCcccceEEEEEcc-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEE
Q 040741 335 EKL---DGVVVNGSMERRYIGNLNLSFAY-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRF 408 (457)
Q Consensus 335 ~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi 408 (457)
+ + +++..... .+.++.+.++. .+...+...| +||.+.+. .+.|||
T Consensus 349 ~-l~~~~~~~~~~~----~g~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~------------------------~~~iRi 399 (429)
T 1s0a_A 349 P-ARDAEMVADVRV----LGAIGVVETTHPVNMAALQKFFVEQGVWIRPF------------------------GKLIYL 399 (429)
T ss_dssp G-GGGCTTEEEEEE----ETTEEEEEESSCBCHHHHHHHHHHTTEECCCB------------------------TTEEEE
T ss_pred H-HhcCCCEEEEEE----eeEEEEEEECCcccHHHHHHHHHHCCCEEecc------------------------CCEEEE
Confidence 7 4 55542211 13455556653 3455666655 58877532 168999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 409 GIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 409 ~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
+++..++++|+++++++|++++++++
T Consensus 400 s~~~~~t~e~i~~~~~~l~~~~~~~~ 425 (429)
T 1s0a_A 400 MPPYIILPQQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTSSGG
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999876543
No 144
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.96 E-value=3.5e-28 Score=235.87 Aligned_cols=305 Identities=19% Similarity=0.134 Sum_probs=228.3
Q ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC---CCCCcEEEeCChHHHH
Q 040741 56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG---ASPKEIIFTSGATESN 131 (457)
Q Consensus 56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g---~~~~~i~~t~g~T~a~ 131 (457)
.+++||+.+.+. +.++++.+++.+.+.... .+.|+. ....++++.++++++ ++++++++|+|+|+++
T Consensus 19 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~~---~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al 89 (335)
T 1uu1_A 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSDA------LRIYYD---SPDEELIEKILSYLDTDFLSKNNVSVGNGADEII 89 (335)
T ss_dssp CCSEEESSCCCSSCCCHHHHHHHHHTCCGGG------GGSCCC---SSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHH
T ss_pred CcceECCCCCCCCCCCHHHHHHHHHHhhhhh------hhcCCC---CchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHH
Confidence 467999998885 678999999999873210 111111 136789999999999 8888999999999999
Q ss_pred HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741 132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211 (457)
Q Consensus 132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~ 211 (457)
+++++++ |++|++. +.|.++...++.. |.+++.++.+.++.+|++++ +++++|++++++||+|.
T Consensus 90 ~~~~~~~-------gd~Vl~~-p~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~nptG~ 153 (335)
T 1uu1_A 90 YVMMLMF-------DRSVFFP-PTYSCYRIFAKAV---GAKFLEVPLTKDLRIPEVNV-----GEGDVVFIPNPNNPTGH 153 (335)
T ss_dssp HHHHHHS-------SEEEECS-SSCHHHHHHHHHH---TCEEEECCCCTTSCCCCCCC-----CTTEEEEEESSCTTTCC
T ss_pred HHHHHHh-------CCcEEEC-CCcHHHHHHHHHc---CCeEEEeccCCCCCCCHHHc-----CCCCEEEEeCCCCCCCC
Confidence 9998876 6899999 9999988777665 99999999876667888776 57899999999999999
Q ss_pred ccChHHHHHHHHhcCCcEEEehhhhcC-C-Cccc-CCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCc
Q 040741 212 IQPMEEIGQICKEFKIPFHTDAAQALG-K-IPVD-VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGG 286 (457)
Q Consensus 212 ~~~l~~i~~l~~~~~v~li~D~a~~~g-~-~~~~-~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~ 286 (457)
+.|.+++.++++.+| ++|+|++|+.. . .... ....+.++++.|++|.+|++| +|+++++++..+++.....
T Consensus 154 ~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--- 229 (335)
T 1uu1_A 154 VFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRL--- 229 (335)
T ss_dssp CCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSC---
T ss_pred CCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcC---
Confidence 999999999999989 89999999732 1 1122 233456899999999888666 7999998766555544321
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHH
Q 040741 287 QERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESL 366 (457)
Q Consensus 287 ~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (457)
..+.+.....++.++++. .+.+++..++++++++++.+.|.+ + ++.+... . ..++.+.++..+..++
T Consensus 230 ------~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~--~--~~~~~~~~~~~~~~~~ 296 (335)
T 1uu1_A 230 ------PFNVSYVSQMFAKVALDH-REIFEERTKFIVEERERMKSALRE-M-GYRITDS--R--GNFVFVFMEKEEKERL 296 (335)
T ss_dssp ------TTCSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCC--C--SSEEEEECCTHHHHHH
T ss_pred ------CCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CcEEcCC--C--CeEEEEECCCCCHHHH
Confidence 126677777777677765 335778888999999999999988 5 5554321 1 3445555543234556
Q ss_pred Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741 367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ 429 (457)
Q Consensus 367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~ 429 (457)
...| +||.+.++ .+++||+++ +.+|+++++++|+++
T Consensus 297 ~~~l~~~gi~v~~~------------------------~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 297 LEHLRTKNVAVRSF------------------------REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHTEEEEEE------------------------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred HHHHHHCCEEEEEC------------------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 5555 68888652 178999996 368899999988753
No 145
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.96 E-value=4e-28 Score=241.29 Aligned_cols=332 Identities=16% Similarity=0.144 Sum_probs=229.8
Q ss_pred CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHH--hC-CCCCcEEEeCChHHH
Q 040741 55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADL--IG-ASPKEIIFTSGATES 130 (457)
Q Consensus 55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~--~g-~~~~~i~~t~g~T~a 130 (457)
..+.++|+.+.+. +.++.+.+++.+.+.... ++.. .+.|+ ......++++.++++ .| ++++++++|+|++++
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~-~~~y~--~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~a 107 (400)
T 3asa_A 32 QHTVINLSIGDTTQPLNASVAEAFASSIARLS-SPTT-CRGYG--PDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVD 107 (400)
T ss_dssp TSCCEECSSCCCCCCCCHHHHHHHHHHHHHHT-SSSC-CCCCC--CTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHH
T ss_pred CCceEeccCCCCCCCCCHHHHHHHHHHHhccc-cccc-ccCCC--CCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHH
Confidence 3567889888775 678999999999886532 1110 11121 113467899999999 57 677889999999999
Q ss_pred HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcE-EEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccc
Q 040741 131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE-ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEI 209 (457)
Q Consensus 131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~-v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~ 209 (457)
+.+++ .+. ++|++|++..+.|.++...++.. |.+ ++.++.+.++.++.+ +++. +++++|++++++||+
T Consensus 108 l~~~~-~~~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~-l~~~--~~~~~v~l~~p~npt 176 (400)
T 3asa_A 108 LFRLL-SFF----GPNQTVAIQDPSYPAYLDIARLT---GAKEIIALPCLQENAFFPE-FPED--THIDILCLCSPNNPT 176 (400)
T ss_dssp HHHHH-HHH----CSSCEEEEEESCCHHHHHHHHHT---TCSEEEEEECCGGGTTCCC-CCTT--CCCSEEEEESSCTTT
T ss_pred HHHHH-HHc----CCCCEEEECCCCcHHHHHHHHHc---CCcceEecccchhcCcccC-hhhc--cCccEEEEeCCCCCC
Confidence 99854 444 68999999999999988766554 888 999998743322221 2221 578899999999999
Q ss_pred ccccC---hHHHHHHHHhcCCcEEEehhhh-cC---CCcccCCCC----cccEEEeccccccCCCC--ceEEEEecCCC-
Q 040741 210 GVIQP---MEEIGQICKEFKIPFHTDAAQA-LG---KIPVDVEKW----NVSLMSLSGHKIYGPKG--VGALYMRRRPR- 275 (457)
Q Consensus 210 G~~~~---l~~i~~l~~~~~v~li~D~a~~-~g---~~~~~~~~~----~~Di~~~s~~K~~g~~G--~G~l~~~~~~~- 275 (457)
|.+.| +++|+++|+++|+++|+|++|+ ++ ..+..+... +.++++.|++|.+|++| +|+++++++..
T Consensus 177 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~ 256 (400)
T 3asa_A 177 GTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTY 256 (400)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBC
T ss_pred CCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhcc
Confidence 99998 5678899999999999999998 42 222233222 24588999999888666 79999987653
Q ss_pred ------ccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCc
Q 040741 276 ------IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERR 349 (457)
Q Consensus 276 ------~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 349 (457)
..+.... .....++.+.....++..+++.. .+++..++++++++++.+.|++ + ++.+..+..
T Consensus 257 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~-- 324 (400)
T 3asa_A 257 ADGHFVIQDWERF------LSTTFNGASIPAQEAGVAGLSIL--PQLEAIHYYRENSDLLRKALLA-T-GFEVFGGEH-- 324 (400)
T ss_dssp TTSCBHHHHHHHH------HHHHCCCCCHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHH-T-TCEEEECSS--
T ss_pred chhhhHHHHHHHH------hccCccCCChHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHH-C-CCeeeCCCC--
Confidence 2221100 01112356766666666666543 5788889999999999999998 5 777765321
Q ss_pred ccceEEEE-Ec-cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741 350 YIGNLNLS-FA-YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE 424 (457)
Q Consensus 350 ~~~~~~~~-~~-~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~ 424 (457)
..++.+. ++ +.+..++...+ .||.+.+|..|.+ ...+++||++ .+++++++++++
T Consensus 325 -~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~-----------------~~~~~iRis~--~~~~e~i~~~l~ 384 (400)
T 3asa_A 325 -APYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGR-----------------SGSGFVRFSS--LGKREDILAACE 384 (400)
T ss_dssp -SSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCG-----------------GGTTCEEEEC--CSCHHHHHHHHH
T ss_pred -ceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCC-----------------CCCCEEEEEe--eCCHHHHHHHHH
Confidence 3445555 44 23445566554 3999999876642 1137899994 468999999999
Q ss_pred HHHHHHHHH
Q 040741 425 LTVKQVEKL 433 (457)
Q Consensus 425 ~l~~~~~~~ 433 (457)
+|++++++.
T Consensus 385 ~l~~~~~~~ 393 (400)
T 3asa_A 385 RLQMAPALQ 393 (400)
T ss_dssp HHHC-----
T ss_pred HHHHHHHhh
Confidence 999888653
No 146
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.96 E-value=3.5e-28 Score=241.87 Aligned_cols=334 Identities=15% Similarity=0.103 Sum_probs=226.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhh
Q 040741 62 DMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHF 141 (457)
Q Consensus 62 ~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~ 141 (457)
|+.+++.+-+.+.+++..+. ++. ..+.|+....+...++++.+++++|.+ ++++++||++|+.++++++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~Y~~~~~~~~~~l~~~ia~~~g~~--~~i~~~~g~~ai~~~~~~l~-- 98 (404)
T 1e5e_A 29 IYQTSTFVFDNCQQGGNRFA-----GQE-SGYIYTRLGNPTVSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTIL-- 98 (404)
T ss_dssp CCCCSBCCCSSHHHHHHHHT-----TSS-CSCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--
T ss_pred CcCCCccccCCHHHHHHhhc-----CCc-CCccccCCcChHHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHh--
Confidence 44455555555555543221 111 123333333467889999999999985 58888889999999999987
Q ss_pred hcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHH
Q 040741 142 YKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQ 220 (457)
Q Consensus 142 ~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~ 220 (457)
++|++|+++.+.|+++...+. .++..|.+++.++.+ |++++++++++++++|++++++||+|.+.|+++|.+
T Consensus 99 --~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~ 171 (404)
T 1e5e_A 99 --KAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCK 171 (404)
T ss_dssp --CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred --CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHH
Confidence 899999999999999888444 245569999999876 889999999999999999999999999999999999
Q ss_pred HHHh-cCCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-CCC--ceEEEEecCCCc-cccccccCCccccccccCC
Q 040741 221 ICKE-FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKG--VGALYMRRRPRI-RVEPLINGGGQERGIRSGT 295 (457)
Q Consensus 221 l~~~-~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g-~~G--~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~t 295 (457)
+|++ +|+++++|++|+.+...... .++.|+++.|+||++| +.+ +|+++++++.+. ++.+...++ ..+.
T Consensus 172 la~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~------~g~~ 244 (404)
T 1e5e_A 172 DAHSQEGVLVIADNTFCSPMITNPV-DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI------TGSV 244 (404)
T ss_dssp HHHTSTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC------CCCC
T ss_pred HHHhhcCCEEEEECCCchhhhCCcc-ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC------CCCC
Confidence 9999 99999999999977642222 3578999999999766 443 499999887655 555443321 0124
Q ss_pred CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE-EeCCC-------------CCcccceEEEEEccc
Q 040741 296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV-VNGSM-------------ERRYIGNLNLSFAYV 361 (457)
Q Consensus 296 ~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~ 361 (457)
.+.....++..+++ .++.+.++..++.+.+.+.+++ .+.+. +.-+. ....++++.+.++..
T Consensus 245 ~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~ 319 (404)
T 1e5e_A 245 ISPHDAWLITRGLS----TLNIRMKAESENAMKVAEYLKS-HPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG 319 (404)
T ss_dssp CCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH
T ss_pred CCHHHHHHHHHhHh----HHHHHHHHHHHHHHHHHHHHHh-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC
Confidence 45544444444443 2455566667778888888877 55442 21111 112366666666532
Q ss_pred cchHHHhcc--cCeEecc---c------CccCCCC--CChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741 362 EGESLLMGL--KEVAVSS---G------SACTSAS--LEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK 428 (457)
Q Consensus 362 ~~~~~~~~l--~~i~~~~---g------~~~~~~~--~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~ 428 (457)
.......+ .+|.+.. | .+|.+.. ..+...+...|+++ +.|||+++. |+++.+++.|++
T Consensus 320 -~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~----~~iRis~g~----e~~~~li~~l~~ 390 (404)
T 1e5e_A 320 -FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITD----GMIRLSVGI----EDADELIADFKQ 390 (404)
T ss_dssp -HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCT----TEEEEECCS----SCHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCC----CeEEEEeCC----CCHHHHHHHHHH
Confidence 12222222 3553222 2 2343221 12333445556543 899999997 899999999999
Q ss_pred HHHHH
Q 040741 429 QVEKL 433 (457)
Q Consensus 429 ~~~~~ 433 (457)
+++.+
T Consensus 391 al~~~ 395 (404)
T 1e5e_A 391 GLDAL 395 (404)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 147
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.96 E-value=2.6e-27 Score=234.32 Aligned_cols=305 Identities=11% Similarity=0.045 Sum_probs=220.3
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEE
Q 040741 96 GWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEIT 174 (457)
Q Consensus 96 ~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~ 174 (457)
++...+...++++.+++++|.+ +.+++ ++||+|++++++++. ++|++|+++.++|.+....++. ++..|.+++
T Consensus 47 ~~~~~~~~~~l~~~la~~~~~~-~~i~~-~sGt~a~~~~~~~~~----~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~ 120 (386)
T 1cs1_A 47 SRRGNPTRDVVQRALAELEGGA-GAVLT-NTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVL 120 (386)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCS-EEEEE-SSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEE
T ss_pred eCCCCccHHHHHHHHHHHhCCC-cEEEe-CCHHHHHHHHHHHHh----CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEE
Confidence 3333467889999999999986 44555 556999999999987 8899999999999987776543 356699999
Q ss_pred EEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEe
Q 040741 175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSL 254 (457)
Q Consensus 175 ~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~ 254 (457)
.++.+ |++++++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+...... ..++|+++.
T Consensus 121 ~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~ 194 (386)
T 1cs1_A 121 FVDQG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL-ALGADLVLH 194 (386)
T ss_dssp EECTT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEE
T ss_pred EeCCC-----CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCcc-ccCceEEEE
Confidence 99865 899999999999999999999999999999999999999999999999999987664333 457899999
Q ss_pred ccccccC-CCCc--eEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040741 255 SGHKIYG-PKGV--GALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLL 330 (457)
Q Consensus 255 s~~K~~g-~~G~--G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~ 330 (457)
|+||++| +.+. |++++++ +..+++.+...++ .++.++...+++..+++ .+....++..++.+++.
T Consensus 195 s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~ 263 (386)
T 1cs1_A 195 SCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI-------GVTGGAFDSYLLLRGLR----TLVPRMELAQRNAQAIV 263 (386)
T ss_dssp ETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH-------TCBCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHH
T ss_pred cCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHhccc----HHHHHHHHHHHHHHHHH
Confidence 9999765 5442 9999986 5555555443321 12445444443333332 34556667778888888
Q ss_pred HHHhhcCCCeEEe-CCC-------------CCcccceEEEEEccccchHHHhcc--cCeEecc---c------CccCCC-
Q 040741 331 NGIKEKLDGVVVN-GSM-------------ERRYIGNLNLSFAYVEGESLLMGL--KEVAVSS---G------SACTSA- 384 (457)
Q Consensus 331 ~~l~~~~~~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~---g------~~~~~~- 384 (457)
+.|.+ ++.+.-. -+. ....++++.+.+.+. .+.+...+ +||.+.. | ..|++.
T Consensus 264 ~~l~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~ 341 (386)
T 1cs1_A 264 KYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQTLRRFLGGLSLFTLAESLGGVESLISHAATMT 341 (386)
T ss_dssp HHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTT
T ss_pred HHHhc-CCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-HHHHHHHHHhCCcceEcccCCCcceeeecccccc
Confidence 88888 6665432 111 122366777777543 34444444 5777763 3 334322
Q ss_pred -CCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741 385 -SLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ 429 (457)
Q Consensus 385 -~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~ 429 (457)
...|+.++...|+.+ +.|||+++..+++++|+.+.++|+++
T Consensus 342 ~~~~~~~~~~~~g~~~----~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 342 HAGMAPEARAAAGISE----TLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp TTTSCHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHhcCCCC----CeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 234566777777754 89999999977778887777777654
No 148
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.96 E-value=5.4e-29 Score=249.97 Aligned_cols=334 Identities=14% Similarity=0.095 Sum_probs=238.5
Q ss_pred CCcEEecCCCC-C-CCCHHH--HHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-----CCCCCc---EEE
Q 040741 56 GRPLYLDMQAT-T-PVDPRV--LDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-----GASPKE---IIF 123 (457)
Q Consensus 56 ~~~i~l~~~~~-~-~~~~~v--~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-----g~~~~~---i~~ 123 (457)
.+.+.|..+.+ . ..++.+ .+++.+.+.... .. +|.......++++.+++++ ++++++ +++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~------~~--~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~ 118 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDE------IF--PYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIV 118 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGG------TS--SCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEE
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCccc------cc--ccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEE
Confidence 45666666655 3 234444 666555443200 01 1111123567888888888 888888 999
Q ss_pred eCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCC---CceE
Q 040741 124 TSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRP---DTGL 199 (457)
Q Consensus 124 t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~---~t~l 199 (457)
|+|+|+|++++++++. ++||+|++..+.|.++...++. ..|.+++.++.+. ++.+|++++++++++ ++++
T Consensus 119 t~g~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~--~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 192 (430)
T 2x5f_A 119 TNALTHGLSLVGDLFV----NQDDTILLPEHNWGNYKLVFNT--RNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVI 192 (430)
T ss_dssp ESHHHHHHHHHHHHHC----CTTCEEEEESSCCTHHHHHHTT--TTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEE
T ss_pred cCCchHHHHHHHHHHh----CCCCEEEEcCCcCccHHHHHHH--hcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEE
Confidence 9999999999999987 8999999999999998776654 0499999998875 457899999999976 7899
Q ss_pred EEEeccccccccccC---hHHHHHHHHh-----cCCcEEEehhhhcCCC------cc--cCCC-Ccc---cEEEeccccc
Q 040741 200 ISVMAVNNEIGVIQP---MEEIGQICKE-----FKIPFHTDAAQALGKI------PV--DVEK-WNV---SLMSLSGHKI 259 (457)
Q Consensus 200 i~i~~~~~~~G~~~~---l~~i~~l~~~-----~~v~li~D~a~~~g~~------~~--~~~~-~~~---Di~~~s~~K~ 259 (457)
+++++++||+|.+.| +++|.++|++ ||+++|+|++|+.... ++ .+.. .+. ++++.|++|.
T Consensus 193 v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 272 (430)
T 2x5f_A 193 MILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKE 272 (430)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHH
T ss_pred EEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccC
Confidence 999999999999999 8899999999 9999999999985322 11 2222 334 6889999998
Q ss_pred cCCCC--ceEEEE---ecCCCccccccccCCccccccccCCCChhHHHHHHHHHH-H--HHHhhHHHHHHHHHHHHHHHH
Q 040741 260 YGPKG--VGALYM---RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE-I--AKKEMDYDHKRITALHDRLLN 331 (457)
Q Consensus 260 ~g~~G--~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~-~--~~~~~~~~~~~~~~~~~~l~~ 331 (457)
+|++| +|++++ +++..+++....... .+ ....+++.....++..+++ . ..+.+++..++++++++++.+
T Consensus 273 ~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 349 (430)
T 2x5f_A 273 FFAWGFRVGFMTFGTSDQTTKEVLEAKVKGL--IR-SNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKE 349 (430)
T ss_dssp TTCGGGCCEEEEEBCCCHHHHHHHHHHHHHH--HH-TTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEEEecCCHHHHHHHHHHHhhh--hh-cccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 87656 799999 766655554332210 00 0123567777777777776 3 233456688899999999999
Q ss_pred HHhhcC--CCeEEeCCCCCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741 332 GIKEKL--DGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI 406 (457)
Q Consensus 332 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i 406 (457)
.|++.+ .++.+..+. .+.++.+.+++.+..++...| +||.+.+|. .+++
T Consensus 350 ~L~~~~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~-----------------------~~~i 403 (430)
T 2x5f_A 350 VVYADQYHSHWQAYDFN---SGYFMAIKVHDVDPEALRKHLIDKYSIGVIALN-----------------------ATDI 403 (430)
T ss_dssp HHTCGGGTTTEEECCCC---BSSEEEEEESSSCHHHHHHHHHHHHCEECEECS-----------------------SSEE
T ss_pred HHHhhCCCCCceeeCCC---ceEEEEeCCCCCCHHHHHHHHHHhCCEEEecCC-----------------------CCeE
Confidence 998310 267765432 123455566544566666665 488887651 2799
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 407 RFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 407 Ri~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
||+++. ++++++++++++|+++++++
T Consensus 404 Ris~~~-~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 404 RIAFSC-VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp EEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred EEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence 999995 48899999999999998765
No 149
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.96 E-value=4.6e-28 Score=243.73 Aligned_cols=336 Identities=14% Similarity=0.142 Sum_probs=226.6
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhh-----
Q 040741 66 TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMH----- 140 (457)
Q Consensus 66 ~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~----- 140 (457)
...+++++++++.+.+...+ +..+ ....++++.+++++|.+ ++++++|||+|++++++++..
T Consensus 38 ~~~~~~~~~~a~~~~~~~~~-------~~~~----~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~al~~l~~~~~~~ 104 (437)
T 3bb8_A 38 GKVIGTKELQLMVEASLDGW-------LTTG----RFNDAFEKKLGEYLGVP--YVLTTTSGSSANLLALTALTSPKLGV 104 (437)
T ss_dssp CCCCCHHHHHHHHHHHHHCC-------CBSC----HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCGGGGG
T ss_pred CCCCCHHHHHHHHHHHHcCC-------cCCC----hHHHHHHHHHHHHHCCC--cEEEeCCHHHHHHHHHHHhhhccccc
Confidence 44667899999999886421 1111 46889999999999986 589999999999999998820
Q ss_pred hhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHH
Q 040741 141 FYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIG 219 (457)
Q Consensus 141 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~ 219 (457)
...++|++|+++.++|.++..+++.. |+++++++++. ++.+|++++++++++++++|++++ ++|...++++|.
T Consensus 105 ~~~~~gd~Vi~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~ 178 (437)
T 3bb8_A 105 RALKPGDEVITVAAGFPTTVNPTIQN---GLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAH---TLGNLFDLAEVR 178 (437)
T ss_dssp GSCCTTCEEEECSSSCHHHHHHHHHT---TCEEEECCEETTTTEECGGGHHHHCCTTEEEEEEEC---GGGCCCCHHHHH
T ss_pred ccCCCcCEEEECCCCcHHHHHHHHHc---CCEEEEEeccCccCCcCHHHHHHhcCCCCeEEEEeC---CCCChhcHHHHH
Confidence 00178999999999999999888765 99999999875 688999999999999999999876 367779999999
Q ss_pred HHHHhcCCcEEEehhhhcCCCcccCCCCc--ccEEEecccc---ccCCCCceEEEEecCCCccccccccCCccc------
Q 040741 220 QICKEFKIPFHTDAAQALGKIPVDVEKWN--VSLMSLSGHK---IYGPKGVGALYMRRRPRIRVEPLINGGGQE------ 288 (457)
Q Consensus 220 ~l~~~~~v~li~D~a~~~g~~~~~~~~~~--~Di~~~s~~K---~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~------ 288 (457)
++|+++|+++|+|++|+.|..+ +....+ .|++++|++| +.|+. +|+++.+++.+.........++..
T Consensus 179 ~l~~~~~~~li~D~a~~~g~~~-~~~~~~~~~d~~~~s~~~~k~l~~g~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (437)
T 3bb8_A 179 RVADKYNLWLIEDCCDALGSTY-DGKMAGTFGDIGTVSFYPAKHITMGE-GGAVFTQSAELKSIIESFRDWGRDCYCAPG 256 (437)
T ss_dssp HHHHHHTCEEEEECTTCTTCEE-TTEETTSSSSEEEEECSTTSSSCCSS-CEEEEESCHHHHHHHHHHHBTTBCC-----
T ss_pred HHHHHcCCEEEEECccccCceE-CCeecccccCEEEEECcCCcCCCCCC-eEEEEeCCHHHHHHHHHHHHhCcccccccc
Confidence 9999999999999999988665 443344 6888888654 33333 488887754333221111111100
Q ss_pred ----------------------------cccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCe
Q 040741 289 ----------------------------RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGV 340 (457)
Q Consensus 289 ----------------------------~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 340 (457)
.++..+..+....+++ ++++ .++...++.+++++++.+.|.+ ++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l-~~l~----~~~~~~~~~~~~~~~l~~~L~~-~~g~ 330 (437)
T 3bb8_A 257 CDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGL-AQLE----RIEEFVEKRKANFKYLKDALQS-CADF 330 (437)
T ss_dssp -----------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHGGG-GTTT
T ss_pred cccccccccccccccccccccccccccccCcccCCCHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHhhc-cCCc
Confidence 0001111122222222 2222 3355566668889999999998 7776
Q ss_pred EEeCCCC-Ccccc--eEEEEEc---cccchHHHhcc--cCeEecccCc--cCCCCCChhHH------HHHcCCCccCCCC
Q 040741 341 VVNGSME-RRYIG--NLNLSFA---YVEGESLLMGL--KEVAVSSGSA--CTSASLEPSYV------LRALGVDEDMAHT 404 (457)
Q Consensus 341 ~~~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~l--~~i~~~~g~~--~~~~~~~~~~~------l~~~g~~~~~~~~ 404 (457)
.+..... ...++ .+.+.+. +.+..++...| +||.++.+.. |.. .|.+. +.+++..+....+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~v~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~ 407 (437)
T 3bb8_A 331 IELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTR---QPYFHDVKYRVVGELTNTDRIMNQ 407 (437)
T ss_dssp EECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHHHTTBCCBCCTTSSGGG---SGGGSSCCCEECSCCHHHHHHHHH
T ss_pred cccCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHHHCCCceeccCCccccc---CchhhccCccccCCCcHHHHHhcC
Confidence 6553221 11122 2334444 34567777777 6998887764 321 12110 0111111222346
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741 405 SIRFGIGRFTTEAEVDRAIELTVKQVE 431 (457)
Q Consensus 405 ~iRi~~~~~~t~edid~~~~~l~~~~~ 431 (457)
.|||+++..+|++|||+++++|+++++
T Consensus 408 ~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 408 TFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp EEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 799999999999999999999988764
No 150
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.96 E-value=2.8e-28 Score=243.46 Aligned_cols=341 Identities=15% Similarity=0.195 Sum_probs=230.4
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741 59 LYLDMQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK 136 (457)
Q Consensus 59 i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~ 136 (457)
+.| +.+.+++++++.+++.+.+.+.+ ++|.+..+.......+....+++++++++|++++++++++ ||+|+.++++
T Consensus 28 i~l-~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~s-Gt~a~~~~~~ 105 (417)
T 3n0l_A 28 LEM-IASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNS-GSQANQGVYA 105 (417)
T ss_dssp EEC-CTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSS-HHHHHHHHHH
T ss_pred eee-ecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEecc-HHHHHHHHHH
Confidence 444 33556779999999999886554 3443221111122234444578899999999876666655 5899999999
Q ss_pred HhhhhhcCCCCEEEEcCCCCcchHHHHHHHH--hcCcEEEEEeCCCCCCCCHHHHHHhcC-CCceEEEEecccccccccc
Q 040741 137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQ--QEGFEITYLPVGADGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQ 213 (457)
Q Consensus 137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~--~~G~~v~~v~~~~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~ 213 (457)
++. ++||+|++..++|.+......... ..++.++.++++.++.+|+++|+++++ +++++|++++++| |.+.
T Consensus 106 ~~~----~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~ 179 (417)
T 3n0l_A 106 ALI----NPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY--ARVI 179 (417)
T ss_dssp HHS----CTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--CSCC
T ss_pred Hhc----CCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--CccC
Confidence 997 899999999999987655222221 235667777777778899999999998 6899998877764 9999
Q ss_pred ChHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCCCcccEEEecccc-ccCCCCceEEEEe-cCCCccccccccCCc
Q 040741 214 PMEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEKWNVSLMSLSGHK-IYGPKGVGALYMR-RRPRIRVEPLINGGG 286 (457)
Q Consensus 214 ~l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~-~~~~~~~~~~~~~~~ 286 (457)
|+++|.++|++||+++|+|++|+.|.. +..+. +.|++++|+|| +.|+.| |+++++ ++..+++......+
T Consensus 180 ~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~~~~~- 255 (417)
T 3n0l_A 180 DFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPRG-GIIMTNDEELAKKINSAIFPG- 255 (417)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCSC-EEEEESCHHHHHHHHHHHTTT-
T ss_pred CHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCCe-eEEEECCHHHHHHHhhhhCCc-
Confidence 999999999999999999999865433 22222 47999999999 446664 999988 45545544433221
Q ss_pred cccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc--ccc
Q 040741 287 QERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY--VEG 363 (457)
Q Consensus 287 ~~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 363 (457)
..++++...++++..++.... .++++..++..++++++.+.|.+ .++.+.... .....+.+.+.. .+.
T Consensus 256 -----~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~--~~~~~~~~~~~~~~~~~ 326 (417)
T 3n0l_A 256 -----IQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD--RKFKLVSDG--TDNHLVLMSFLDREFSG 326 (417)
T ss_dssp -----TCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGS--CSSSEEEEECTTSSSCH
T ss_pred -----ccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--CCceeccCC--CCceEEEEEcccCCCCH
Confidence 124666777777777776643 45788889999999999999998 577776521 123344455532 345
Q ss_pred hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC----CCHHHHHHHHHHHHHHHHHH
Q 040741 364 ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF----TTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 364 ~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~----~t~edid~~~~~l~~~~~~~ 433 (457)
..+...| +||.+..+..... ..+......+|+++... .+++||++++++|++++++.
T Consensus 327 ~~~~~~l~~~gi~v~~~~~~~~-------------~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 327 KDADLALGNAGITANKNTVPGE-------------IRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp HHHHHHHHHTTEECEECCCTTC-------------CSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCeEEeccccCCC-------------CcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 5565555 5888876432111 01122346799997643 56899999999999998754
No 151
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.96 E-value=1.1e-26 Score=232.25 Aligned_cols=307 Identities=15% Similarity=0.115 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEE-
Q 040741 99 SEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYL- 176 (457)
Q Consensus 99 ~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v- 176 (457)
..+...++++.+++++|.+. .+++++||+|++++++++. ++|++|+++.++|.++...+.. ++..|++++++
T Consensus 56 ~~~~~~~l~~~la~~~g~~~--~v~~~sGt~A~~~~l~~~~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (421)
T 2ctz_A 56 MNPTVDVLEKRLAALEGGKA--ALATASGHAAQFLALTTLA----QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTS 129 (421)
T ss_dssp BCHHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC----CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECC
T ss_pred CChHHHHHHHHHHHHhCCCc--eEEecCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence 34678899999999999863 5666778999999999886 8999999999999998887642 35569999998
Q ss_pred eCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhh-hcCCCcccCCCCcccEEEec
Q 040741 177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ-ALGKIPVDVEKWNVSLMSLS 255 (457)
Q Consensus 177 ~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~-~~g~~~~~~~~~~~Di~~~s 255 (457)
+.+ |+++++++|++++++|++++++|++|.+.|+++|.++|+++|+++|+|++| +.|.. ......++|++++|
T Consensus 130 ~~~-----d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~-~~~~~~~~Di~~~s 203 (421)
T 2ctz_A 130 REE-----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL-LRPLAWGAALVTHS 203 (421)
T ss_dssp TTC-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-CCGGGGTCSEEEEE
T ss_pred CCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccc-CCccccCCeEEEEC
Confidence 765 899999999999999999999999999999999999999999999999999 87742 12224578999999
Q ss_pred cccccCCCC--ceEEEEec-C--C----CccccccccCCcccc--------------cc----ccC-CCChhHHHHHHHH
Q 040741 256 GHKIYGPKG--VGALYMRR-R--P----RIRVEPLINGGGQER--------------GI----RSG-TLPTPLIVGFGSA 307 (457)
Q Consensus 256 ~~K~~g~~G--~G~l~~~~-~--~----~~~~~~~~~~~~~~~--------------~~----~~~-t~~~~~~~al~~a 307 (457)
++|++|++| +|++++.+ + . ...+.+...++.... ++ ..| ..++...+.....
T Consensus 204 ~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~ 283 (421)
T 2ctz_A 204 LTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLG 283 (421)
T ss_dssp TTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHH
T ss_pred CcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 999766433 67777753 2 2 223333222211000 00 011 2232222222222
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC---------------CcccceEEEEEccc--cchHHHhcc
Q 040741 308 CEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME---------------RRYIGNLNLSFAYV--EGESLLMGL 370 (457)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~~~~~l 370 (457)
+ +.+..+.++..++++++.+.|.+ .|++..+..+. ...++++.|.+.+. +...++..+
T Consensus 284 l----~~l~~r~~~~~~~a~~l~~~L~~-~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l 358 (421)
T 2ctz_A 284 M----ETLSLRAERHVENTLHLAHWLLE-QPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRL 358 (421)
T ss_dssp H----TTHHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTC
T ss_pred c----chHHHHHHHHHHhHHHHHHHHHh-CCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHhC
Confidence 2 23455667777899999999999 89988763221 24567788888642 234566666
Q ss_pred --cCeEecccCccCCC--------CCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741 371 --KEVAVSSGSACTSA--------SLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 371 --~~i~~~~g~~~~~~--------~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~ 430 (457)
.++.++.|..|+.. ...+.-.+..+|+++ +.||++++. ||+|.+++.|++++
T Consensus 359 ~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~----~~vRlS~g~----e~~~~li~~l~~al 420 (421)
T 2ctz_A 359 KLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSP----EMVRLSVGL----EHVEDLKAELKEAL 420 (421)
T ss_dssp SSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCT----TEEEEECCS----SCHHHHHHHHHHHT
T ss_pred CcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCC----CeEEEEeCC----CCHHHHHHHHHHHh
Confidence 45666667544321 111223467788765 899999986 57888888887765
No 152
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.96 E-value=4e-27 Score=240.63 Aligned_cols=330 Identities=13% Similarity=0.067 Sum_probs=228.7
Q ss_pred CCCHHHHHHHHHHHhhccC-CCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHHHHHHhhhhhcC
Q 040741 68 PVDPRVLDAMLPFYLSRYG-NPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATESNNVSIKGVMHFYKD 144 (457)
Q Consensus 68 ~~~~~v~~a~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a~~~al~~~~~~~~~ 144 (457)
.+|+++++++.+.+....+ ... .|....+..+..+.+.+.+.+..| ++++++++|+|+|+|+.+++.++.. +
T Consensus 106 ~~p~~~~~~a~~~l~~~~~~~~~--~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~ 180 (500)
T 3tcm_A 106 LFSADSISRAKQILAMIPGRATG--AYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR---N 180 (500)
T ss_dssp HSCHHHHHHHHHHHTTSTTSCSS--SCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC---S
T ss_pred cCCHHHHHHHHHHHHcCCCCcCC--CcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC---C
Confidence 4777888888777765322 111 111111222333334444444444 5677899999999999999998863 5
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCC------CceEEEEeccccccccccC--
Q 040741 145 KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRP------DTGLISVMAVNNEIGVIQP-- 214 (457)
Q Consensus 145 ~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~------~t~li~i~~~~~~~G~~~~-- 214 (457)
+||.|+++.+.|+++...++.. |.+++.++.+.+ +.+|+++|++++++ ++++|++++++||||.+++
T Consensus 181 ~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~ 257 (500)
T 3tcm_A 181 EKDGILVPIPQYPLYSASIALH---GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEE 257 (500)
T ss_dssp TTEEEEEEESCCTHHHHHHHHT---TCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHH
T ss_pred CCCEEEEeCCCcHhHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHH
Confidence 8999999999999998887766 999999998754 48999999999986 7889999999999999988
Q ss_pred -hHHHHHHHHhcCCcEEEehhhhcCCCc-----ccCC---------CCcc-cEEEecccccc-CCCC--ceEEEE---ec
Q 040741 215 -MEEIGQICKEFKIPFHTDAAQALGKIP-----VDVE---------KWNV-SLMSLSGHKIY-GPKG--VGALYM---RR 272 (457)
Q Consensus 215 -l~~i~~l~~~~~v~li~D~a~~~g~~~-----~~~~---------~~~~-Di~~~s~~K~~-g~~G--~G~l~~---~~ 272 (457)
+++|+++|++||+++|+|++|+..... ..+. ..+. .+++.|+||.+ |..| +|++++ ++
T Consensus 258 ~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~ 337 (500)
T 3tcm_A 258 NQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSA 337 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCT
T ss_pred HHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCH
Confidence 667777799999999999999853221 1110 1112 36677999966 6544 799988 55
Q ss_pred CCCccccccccCCccccccccCCCChhHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEE
Q 040741 273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE----------IAKKEMDYDHKRITALHDRLLNGIKEKLDGVVV 342 (457)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~----------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 342 (457)
+.++++..... ...+++.....++..+++ ...++++++.++++++++++.+.|.+ ++++.+
T Consensus 338 ~~~~~l~~~~~--------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~g~~~ 408 (500)
T 3tcm_A 338 PVREQIYKIAS--------VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNK-LEGITC 408 (500)
T ss_dssp THHHHHHHHHH--------TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTEEC
T ss_pred HHHHHHHHHHh--------cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEE
Confidence 55444443221 123566666666666664 23455788888999999999999999 889888
Q ss_pred eCCCCCcccceEEEEEccc------------cch-HHH-hcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741 343 NGSMERRYIGNLNLSFAYV------------EGE-SLL-MGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI 406 (457)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~------------~~~-~~~-~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i 406 (457)
..+.. +.++...+... ... .++ ..| +||.+.+|..|... .+.+.+
T Consensus 409 ~~~~g---~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~----------------~g~~~i 469 (500)
T 3tcm_A 409 NEAEG---AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQV----------------PGTWHF 469 (500)
T ss_dssp CCCCB---TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCC----------------TTCCBE
T ss_pred ecCCe---EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC----------------CCCCEE
Confidence 75432 22222222211 111 122 333 59999999877531 123689
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741 407 RFGIGRFTTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 407 Ri~~~~~~t~edid~~~~~l~~~~~~~~~ 435 (457)
|++++ ++++++++++++|+++++++.+
T Consensus 470 Ris~~--~~~e~i~~~i~~l~~~~~~~~~ 496 (500)
T 3tcm_A 470 RCTIL--PQEDKIPAVISRFTVFHEAFMS 496 (500)
T ss_dssp EEESC--SCTTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 99999 6889999999999999987653
No 153
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.96 E-value=7.7e-28 Score=239.22 Aligned_cols=299 Identities=13% Similarity=0.077 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeCC
Q 040741 101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPVG 179 (457)
Q Consensus 101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~~ 179 (457)
+...++++.+++++|.+ + .+++++|++|+.+++. +. ++|++|+++.+.|.+....+.. ++..|+++++++.+
T Consensus 67 p~~~~l~~~la~~~g~~-~-~i~~~sG~~ai~~~~~-l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 139 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAK-Y-CLAFASGLAATVTITH-LL----KAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS 139 (403)
T ss_dssp HHHHHHHHHHHHHHTCS-E-EEEESCHHHHHHHHHT-TS----CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred chHHHHHHHHHHHhCCC-c-EEEECCHHHHHHHHHH-Hh----CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC
Confidence 67889999999999986 3 4555567899999988 76 8999999999999987775543 35669999999876
Q ss_pred CCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcC-CcEEEehhhhcCCCcccCCCCcccEEEecccc
Q 040741 180 ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK-IPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK 258 (457)
Q Consensus 180 ~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~-v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K 258 (457)
|++++++++++++++|++++++||+|.+.|+++|.++|+++| +++++|++++.+.....+ ..++|+++.|++|
T Consensus 140 -----d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~-~~~~div~~S~sK 213 (403)
T 3cog_A 140 -----KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPL-ALGADISMYSATK 213 (403)
T ss_dssp -----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTT-TTTCSEEEEETTT
T ss_pred -----CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCcc-ccCCeEEEEcChh
Confidence 899999999999999999999999999999999999999999 999999999987532222 2578999999999
Q ss_pred ccC-CCC--ceEEEEe-cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040741 259 IYG-PKG--VGALYMR-RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIK 334 (457)
Q Consensus 259 ~~g-~~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~ 334 (457)
++| +.| +|+++++ ++..+++.+...+++ ++.++....++..+++ .+..+.++..+++..+.+.++
T Consensus 214 ~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g-------~~~~~~~~~~~~~~l~----~l~~r~~~~~~n~~~l~~~l~ 282 (403)
T 3cog_A 214 YMNGHSDVVMGLVSVNCESLHNRLRFLQNSLG-------AVPSPIDCYLCNRGLK----TLHVRMEKHFKNGMAVAQFLE 282 (403)
T ss_dssp TTTCSSCCCCEEEEECCHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCeEEEEEECcHHHHHHHHHHHHhcC-------CCCCHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHh
Confidence 655 554 5999986 444455544433221 2445544444433443 334455666667777777776
Q ss_pred hcCCCe--------------EEeCCCCCcccceEEEEEccccchHHHhcc--cCe---EecccC------ccCCCC--CC
Q 040741 335 EKLDGV--------------VVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEV---AVSSGS------ACTSAS--LE 387 (457)
Q Consensus 335 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i---~~~~g~------~~~~~~--~~ 387 (457)
+ .+.+ .+..+.....++++.+.+++.. .+....+ .++ .++.|. +|.+.. ..
T Consensus 283 ~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~ 360 (403)
T 3cog_A 283 S-NPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTL-QHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASV 360 (403)
T ss_dssp T-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCH-HHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTS
T ss_pred c-CCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCH-HHHHHHHHhCCcceEccCCCCcceeeecccccccccC
Confidence 6 4332 2211111123677777775421 2222222 244 333353 333222 23
Q ss_pred hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741 388 PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ 429 (457)
Q Consensus 388 ~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~ 429 (457)
|+..+..+|+.+ +.|||+++..+++++|+.+.++|+++
T Consensus 361 ~~~~~~~~g~~~----~~iRlSvg~e~~~d~i~~l~~al~~~ 398 (403)
T 3cog_A 361 LKNDRDVLGISD----TLIRLSVGLEDEEDLLEDLDQALKAA 398 (403)
T ss_dssp CHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHhcCCCc----CeEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 455667778753 89999999977777777776666544
No 154
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.96 E-value=3.1e-28 Score=244.20 Aligned_cols=302 Identities=13% Similarity=0.092 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHH--HHHHHHhhhhhcC--C----------CCEEEEcCCCCcchHHHHHHH
Q 040741 101 VAVETARSQIADLIGASPKEIIFTSGATESN--NVSIKGVMHFYKD--K----------KRHVITTQTEHKCVLDSCRHL 166 (457)
Q Consensus 101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~--~~al~~~~~~~~~--~----------g~~vi~~~~~h~~~~~~~~~~ 166 (457)
....++++.++++++++++++++|+|+++++ +++++++. + + |++|++..+.|..+...++..
T Consensus 78 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~----~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~ 153 (427)
T 3ppl_A 78 DGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYI----FGNNDSVQPWSKEETVKWICPVPGYDRHFSITERF 153 (427)
T ss_dssp SCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHh----ccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHc
Confidence 3567899999999999989999999999999 58888877 4 5 899999999999988777665
Q ss_pred HhcCcEEEEEeCCCCCCCCHHHHHHhcC-CCceEEEEe-ccccccccccChH---HHHHHH-HhcCCcEEEehhhhcCCC
Q 040741 167 QQEGFEITYLPVGADGIVNLDELRAAIR-PDTGLISVM-AVNNEIGVIQPME---EIGQIC-KEFKIPFHTDAAQALGKI 240 (457)
Q Consensus 167 ~~~G~~v~~v~~~~~~~~d~~~le~~i~-~~t~li~i~-~~~~~~G~~~~l~---~i~~l~-~~~~v~li~D~a~~~g~~ 240 (457)
|++++.++.+.+| +|+++|+++++ +++++|++. +++||||.+.|.+ +|+++| ++||+++|+|++|+....
T Consensus 154 ---g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~ 229 (427)
T 3ppl_A 154 ---GFEMISVPMNEDG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTL 229 (427)
T ss_dssp ---TCEEEEEEEETTE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBS
T ss_pred ---CCEEEEeCCCCCC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCccccc
Confidence 9999999998776 99999999995 678888755 8899999999966 888888 999999999999985211
Q ss_pred ------cccC-------CCCcccEEEeccccccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHH
Q 040741 241 ------PVDV-------EKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGS 306 (457)
Q Consensus 241 ------~~~~-------~~~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~ 306 (457)
+.++ ...+.++++.|+||.++ +.++|+++++++....+...... .....+.....++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~-------~~~~~~~~~q~~~~~ 302 (427)
T 3ppl_A 230 TDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGI-------RGIGPNKVNQLAHAR 302 (427)
T ss_dssp SSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHH-------HCSCCCHHHHHHHHH
T ss_pred CCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhc-------ccCCCCHHHHHHHHH
Confidence 1111 13356799999999633 34589999987655555433221 112344444444444
Q ss_pred HHHH---HHHhhHHHHHHHHHHHHHHHHHHhhcC---CCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEeccc
Q 040741 307 ACEI---AKKEMDYDHKRITALHDRLLNGIKEKL---DGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSG 378 (457)
Q Consensus 307 al~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g 378 (457)
+++. ....+.+..+.++++.+.+.+.|.+.+ +++.+..+. . +.++.+.++..+...+...+ +||.+.+|
T Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-~--g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~ 379 (427)
T 3ppl_A 303 YFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPA-G--GYFISLDVVPGTASRVAELAKEAGIALTGA 379 (427)
T ss_dssp HHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCS-B--SSCEEEECSTTCHHHHHHHHHHTTEECCCT
T ss_pred HHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCC-c--cEEEEEECCcchHHHHHHHHHHCCCEEecC
Confidence 4432 233466666777777777766665422 345554432 2 45556666644456666655 69999986
Q ss_pred CccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 379 SACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 379 ~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
+.|.+. ......+++||+++.. ++++|++++++|.++++++.
T Consensus 380 g~~~~~-------------~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 380 GSSYPL-------------RQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp TTTSGG-------------GCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCC-------------CCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 554321 0112348999999765 89999999999999998764
No 155
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.96 E-value=1.4e-27 Score=236.45 Aligned_cols=303 Identities=14% Similarity=0.146 Sum_probs=212.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcE
Q 040741 94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFE 172 (457)
Q Consensus 94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~ 172 (457)
.++....+...++++.+++++|.+ ++++++||++|+.++++++. ++|++|+++.+.|.++...+.. ++..|++
T Consensus 52 ~y~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~~----~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~ 125 (389)
T 3acz_A 52 IYSRLGNPTVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAFL----QKGDHLIAGDTLYGCTVSLFTHWLPRFGIE 125 (389)
T ss_dssp CBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTTC----CTTCEEEEESSCCHHHHHHHHHHHHHTTCE
T ss_pred ccCCCCChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCCE
Confidence 334434478889999999999986 47788889999999999887 8999999999999998777543 4566999
Q ss_pred EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741 173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM 252 (457)
Q Consensus 173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~ 252 (457)
+++++.. |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+.....+ ..++|++
T Consensus 126 ~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~-~~~~di~ 199 (389)
T 3acz_A 126 VDLIDTS-----DVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPL-ELGADIA 199 (389)
T ss_dssp EEEECTT-----CHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGG-GTTCSEE
T ss_pred EEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCcc-ccCCeEE
Confidence 9999874 899999999999999999999999999999999999999999999999999876532112 2578999
Q ss_pred EeccccccC-CCC--ceEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741 253 SLSGHKIYG-PKG--VGALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR 328 (457)
Q Consensus 253 ~~s~~K~~g-~~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~ 328 (457)
+.|++|++| +.+ +|++++++ +..+++.+....+ .++.++.....+..+++ .+..+.++..++++.
T Consensus 200 ~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~-------g~~~~~~~~~~~~~~l~----~l~~r~~~~~~~~~~ 268 (389)
T 3acz_A 200 LHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDA-------GSLMAPMDAFLCARGMK----TLPIRMQIHMENGLK 268 (389)
T ss_dssp EEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHT----THHHHHHHHHHHHHH
T ss_pred EECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHcCcc----HHHHHHHHHHHHHHH
Confidence 999999655 544 49999987 6655555443211 12344433333333332 345556677778888
Q ss_pred HHHHHhhcCCCeEEe-CCC-------------CCcccceEEEEEccccchHHHhcc--cCeEecc---c------CccCC
Q 040741 329 LLNGIKEKLDGVVVN-GSM-------------ERRYIGNLNLSFAYVEGESLLMGL--KEVAVSS---G------SACTS 383 (457)
Q Consensus 329 l~~~l~~~~~~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~---g------~~~~~ 383 (457)
+.+.|++ .+.+.-+ -+. ....++++.+.+++ .++....+ .++.+.. | ..|.+
T Consensus 269 l~~~l~~-~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~ 345 (389)
T 3acz_A 269 VAKFLEQ-HEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPAS 345 (389)
T ss_dssp HHHHHHH-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTT
T ss_pred HHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--HHHHHHHHHhCCCcEECcCCCCcccEeeCCcc
Confidence 8888877 5544322 110 01236677777764 33333333 3554444 5 55544
Q ss_pred CCC--ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741 384 ASL--EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 384 ~~~--~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~ 430 (457)
... .+..++...|+++ +.|||+++.. +++.+++.|++++
T Consensus 346 ~~~~~~~~~~~~~~g~~~----~~iRlsvg~~----~~~~li~~l~~al 386 (389)
T 3acz_A 346 MTHAAVPENIMRKQGITP----ELVRISVGIE----NVDDIIADLKQAL 386 (389)
T ss_dssp TTTSSSCHHHHHHHTCCT----TEEEEECCSS----CHHHHHHHHHHHH
T ss_pred cccccCCHHHHHhcCCCc----CeEEEEeccC----CHHHHHHHHHHHH
Confidence 322 2455677778764 8999999985 4444555555544
No 156
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.96 E-value=7.4e-28 Score=239.62 Aligned_cols=340 Identities=18% Similarity=0.163 Sum_probs=238.1
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhc--cCCCCCCccchhhhHHHHHH-HHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVE-TARSQIADLIGASPKEIIFTSGATESNNV 133 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~--~~~p~~~~~~~~~~~~~~~~-~~~~~la~~~g~~~~~i~~t~g~T~a~~~ 133 (457)
+++.|.. +.+++++++.+++.+.+.+. .++|.+. +..|....+..+ .+++++++++|+++++ +++++||+|+.+
T Consensus 24 ~~i~~~~-~~~~~~~~v~~a~~~~~~~~~~~~y~~~~-~~~g~~~~~~~e~~ar~~la~~~g~~~~~-i~~~sGt~a~~~ 100 (407)
T 2dkj_A 24 EGLELIA-SENFVSKQVREAVGSVLTNKYAEGYPGAR-YYGGCEVIDRVESLAIERAKALFGAAWAN-VQPHSGSQANMA 100 (407)
T ss_dssp TSEECCT-TCCCCCHHHHHHHTSGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHH
T ss_pred cceeecc-CCCCCCHHHHHHHHhhhhcCcccCCCccc-ccCCchHHHHHHHHHHHHHHHHhCCCcce-EEecchHHHHHH
Confidence 4454443 34456999999999988642 2333321 111222222333 3567999999997643 455557789999
Q ss_pred HHHHhhhhhcCCCCEEEEcCCCCcchH---HHHHHHHhcCc--EEEEEeCC-CCCCCCHHHHHHhcCC-CceEEEEeccc
Q 040741 134 SIKGVMHFYKDKKRHVITTQTEHKCVL---DSCRHLQQEGF--EITYLPVG-ADGIVNLDELRAAIRP-DTGLISVMAVN 206 (457)
Q Consensus 134 al~~~~~~~~~~g~~vi~~~~~h~~~~---~~~~~~~~~G~--~v~~v~~~-~~~~~d~~~le~~i~~-~t~li~i~~~~ 206 (457)
+++++. ++|++|+++.++|+++. .+++.. |. .++.++++ .++.+|++++++++++ ++++|+++.++
T Consensus 101 ~~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~ 173 (407)
T 2dkj_A 101 VYMALM----EPGDTLMGMDLAAGGHLTHGSRVNFS---GKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASA 173 (407)
T ss_dssp HHHHHC----CTTCEEEEECGGGTCCGGGTCTTSHH---HHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSS
T ss_pred HHHHhc----CCCCEEEEecccccCccchHHHHHhc---CceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccc
Confidence 999986 89999999999998884 333333 54 44555544 3678999999999974 88999887777
Q ss_pred cccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCC---CcccEEEecccc-ccCCCCceEEEEe-cCCCcccccc
Q 040741 207 NEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEK---WNVSLMSLSGHK-IYGPKGVGALYMR-RRPRIRVEPL 281 (457)
Q Consensus 207 ~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~---~~~Di~~~s~~K-~~g~~G~G~l~~~-~~~~~~~~~~ 281 (457)
|+ ...|+++|.++|++||+++|+|++|+.|....+... ...|++++|+|| +.|+.| |+++++ ++..+++.+.
T Consensus 174 ~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~ 250 (407)
T 2dkj_A 174 YP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKL 250 (407)
T ss_dssp CC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHH
T ss_pred cC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhh
Confidence 75 788999999999999999999999986433222110 137999999999 456775 999998 5665555544
Q ss_pred ccCCccccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc
Q 040741 282 INGGGQERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY 360 (457)
Q Consensus 282 ~~~~~~~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (457)
...+ ..++++...+.++.++++... .++++..++.+++++++.+.|++ + ++.+..++. .+.++.+.++.
T Consensus 251 ~~~~------~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~~~~~~~~~ 320 (407)
T 2dkj_A 251 IFPG------IQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELAR-R-GYRIVTGGT--DNHLFLVDLRP 320 (407)
T ss_dssp HTTT------TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC--SSSEEEEECGG
T ss_pred hccc------ccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-C-CceeecCCC--CceEEEEECcc
Confidence 3222 234667766767777887764 46789999999999999999999 6 788775321 25556666653
Q ss_pred --ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC----CCHHHHHHHHHHHHHHHHH
Q 040741 361 --VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF----TTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 361 --~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~----~t~edid~~~~~l~~~~~~ 432 (457)
.+...+...| +||.+.+|..+.. .......+.+||+++.+ ++++|+++++++|++++++
T Consensus 321 ~~~~~~~~~~~l~~~gi~v~~~~~~~~-------------~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 321 KGLTGKEAEERLDAVGITVNKNAIPFD-------------PKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp GTCCHHHHHHHHHHTTEECEECCCTTC-------------SSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCceecCCcCccc-------------cccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 2455666666 6999888763210 00011237899999753 6899999999999999987
No 157
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.95 E-value=3.2e-26 Score=229.40 Aligned_cols=345 Identities=16% Similarity=0.139 Sum_probs=232.7
Q ss_pred ecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh
Q 040741 61 LDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVM 139 (457)
Q Consensus 61 l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~ 139 (457)
|..+.+. +.|+++.+++.+.+.... |+. ..+...++++.+++++|.+ ++++|+|||+|++++++++.
T Consensus 21 l~~~~p~~~~p~~~~~a~~~~~~~~~---------y~~-~~~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~l~~l~ 88 (424)
T 2po3_A 21 LLVGRPNRIDRARLYERLDRALDSQW---------LSN-GGPLVREFEERVAGLAGVR--HAVATCNATAGLQLLAHAAG 88 (424)
T ss_dssp EETTCCCCCCHHHHHHHHHHHHHHTC---------CSS-SCHHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHHT
T ss_pred ccccCCCCCChHHHHHHHHHHHhcCC---------ccc-CCHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC
Confidence 4443444 346789999988876421 111 0256789999999999974 69999999999999999874
Q ss_pred hhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEeccccccccccChHHH
Q 040741 140 HFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEI 218 (457)
Q Consensus 140 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i 218 (457)
+|++|+++.++|+++..+++.. |++++.++++. ++.+|++++++++++++++|++++ ++|...++++|
T Consensus 89 -----~gd~Vlv~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~~~l~~i 157 (424)
T 2po3_A 89 -----LTGEVIMPSMTFAATPHALRWI---GLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGRPCAADQL 157 (424)
T ss_dssp -----CCSEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGCCCCHHHH
T ss_pred -----CCCEEEECCCccHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCCcCCHHHH
Confidence 4799999999999998877655 99999999885 677999999999998999888854 79999999999
Q ss_pred HHHHHhcCCcEEEehhhhcCCCcc--cCCCCcccEEEeccc--cccCCCCceEEEEe-cCCCccccccccCCccccc-c-
Q 040741 219 GQICKEFKIPFHTDAAQALGKIPV--DVEKWNVSLMSLSGH--KIYGPKGVGALYMR-RRPRIRVEPLINGGGQERG-I- 291 (457)
Q Consensus 219 ~~l~~~~~v~li~D~a~~~g~~~~--~~~~~~~Di~~~s~~--K~~g~~G~G~l~~~-~~~~~~~~~~~~~~~~~~~-~- 291 (457)
.++|+++|+++|+|++|+.|...- .+..+ .|++++|++ |.+++..+|+++.+ ++..+++.+....+..... .
T Consensus 158 ~~la~~~~~~li~Dea~~~g~~~~~~~~~~~-~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~ 236 (424)
T 2po3_A 158 RKVADEHGLRLYFDAAHALGCAVDGRPAGSL-GDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSP 236 (424)
T ss_dssp HHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCT
T ss_pred HHHHHHcCCEEEEECccccCCeECCeecccc-cCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCcccccccc
Confidence 999999999999999999765421 11111 489999988 76665557999887 4555555544332211000 0
Q ss_pred ccCCC-ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcc--cceEEEEEc----cccch
Q 040741 292 RSGTL-PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRY--IGNLNLSFA----YVEGE 364 (457)
Q Consensus 292 ~~~t~-~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~ 364 (457)
..+.. ....+.+. .++.. .+.+++..++.+++.+++.+.|.+ ++++.+..++.... ..++.+.++ +.+..
T Consensus 237 ~~g~~~~~~~~~aa-~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 313 (424)
T 2po3_A 237 AGGTNAKMSEAAAA-MGLTS-LDAFPEVIDRNRRNHAAYREHLAD-LPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRD 313 (424)
T ss_dssp TCCCBCCCCHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHTCS-CTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHH
T ss_pred ccCcCCCcCHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCCCCccccEEEEEEECCccchhhHH
Confidence 00110 11112111 12221 234677888888999999999988 78888876332211 234445554 34566
Q ss_pred HHHhcc--cCeEecccCccCCCC-CChhHHHHHcC---CC--ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 040741 365 SLLMGL--KEVAVSSGSACTSAS-LEPSYVLRALG---VD--EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM 436 (457)
Q Consensus 365 ~~~~~l--~~i~~~~g~~~~~~~-~~~~~~l~~~g---~~--~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~ 436 (457)
++...| +||.+.+ .|.+.. ..+. +..+| .. .....+.||+++...++++|+++++++|++++++.++.
T Consensus 314 ~l~~~L~~~gI~v~~--~~~~~~~~~~~--~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~~~ 389 (424)
T 2po3_A 314 LVMEVLKAEGVHTRA--YFSPGCHELEP--YRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGREL 389 (424)
T ss_dssp HHHHHHHHTTEECBC--TTCSCGGGSTT--TTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCceec--ccCCccccchh--hhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhHHH
Confidence 676666 6888865 232110 0000 00000 00 00112458999889999999999999999999876544
No 158
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.95 E-value=1.4e-27 Score=239.03 Aligned_cols=341 Identities=13% Similarity=0.082 Sum_probs=230.6
Q ss_pred CCcEEecCCCCC----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHH
Q 040741 56 GRPLYLDMQATT----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESN 131 (457)
Q Consensus 56 ~~~i~l~~~~~~----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~ 131 (457)
+..+.|..+.+. ++++.+.+++.+..... .+ ....+|.......++++.++++++++++++++|+|+++++
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~--~~---~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al 106 (422)
T 3d6k_A 32 NLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTK--DG---VDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNI 106 (422)
T ss_dssp TCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCT--TC---CBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHH
T ss_pred CCeEeCCCCCCChhhCCCcHHHHHHHHHHHhhc--cc---hhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHH
Confidence 345677666554 44556666655432100 00 0011122123467899999999999989999999999997
Q ss_pred --HHHHHHhhhhhcCC------------CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-C
Q 040741 132 --NVSIKGVMHFYKDK------------KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-D 196 (457)
Q Consensus 132 --~~al~~~~~~~~~~------------g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~ 196 (457)
.+++.++. .+ +++|++..+.|..+...++.. |.+++.++.+.+| +|++++++++++ +
T Consensus 107 ~l~~~~~~l~----~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~g-~d~~~l~~~l~~~~ 178 (422)
T 3d6k_A 107 MFDLISWSYT----WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHF---GFEMINVPMTDEG-PDMGVVRELVKDPQ 178 (422)
T ss_dssp HHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHH---TCEEEEEEEETTE-ECHHHHHHHHTSTT
T ss_pred HHHHHHHHhc----CcccccccccccCCCCEEEEeCCccHHHHHHHHHc---CCEEEecCCCCCC-CCHHHHHHHHhcCC
Confidence 66667776 33 457999999999998887776 9999999987665 899999999986 7
Q ss_pred ceEEE-EeccccccccccChH---HHHHHHH-hcCCcEEEehhhhc---CCC--c-ccC-------CCCcccEEEecccc
Q 040741 197 TGLIS-VMAVNNEIGVIQPME---EIGQICK-EFKIPFHTDAAQAL---GKI--P-VDV-------EKWNVSLMSLSGHK 258 (457)
Q Consensus 197 t~li~-i~~~~~~~G~~~~l~---~i~~l~~-~~~v~li~D~a~~~---g~~--~-~~~-------~~~~~Di~~~s~~K 258 (457)
+++|+ +++++||||.+.|.+ +|.++|+ +||+++|+|++|+. ... + ..+ ...+.++++.|++|
T Consensus 179 ~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 258 (422)
T 3d6k_A 179 VKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSK 258 (422)
T ss_dssp EEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTT
T ss_pred CeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhh
Confidence 88877 789999999999966 7888888 99999999999973 111 1 111 23356789999999
Q ss_pred ccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHh
Q 040741 259 IYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI---AKKEMDYDHKRITALHDRLLNGIK 334 (457)
Q Consensus 259 ~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~---~~~~~~~~~~~~~~~~~~l~~~l~ 334 (457)
..+| -++|+++++++.++++...... ...+.+.....++..+++. ..+.+++..+.++++++++.+.|.
T Consensus 259 ~~~~GlriG~~~~~~~l~~~l~~~~~~-------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 331 (422)
T 3d6k_A 259 ITHAGSGVSFFASSKENIEWYASHANV-------RGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILD 331 (422)
T ss_dssp TSCTTSSCEEEECCHHHHHHHHHHHHH-------HCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcccceEEEEeCHHHHHHHHHHHHh-------hcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6333 2389999987665555433221 1124566666666566643 123466667777777777777765
Q ss_pred hc---CCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEeccc-CccCCCCCChhHHHHHcCCCccCCCCeEEE
Q 040741 335 EK---LDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSG-SACTSASLEPSYVLRALGVDEDMAHTSIRF 408 (457)
Q Consensus 335 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g-~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi 408 (457)
+. ++++.+..+ .. +.++.+.++..+...+...+ +||.+.+| ..|... .....++|||
T Consensus 332 ~~l~~~~~~~~~~p-~~--g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~--------------~~~~~~~iRi 394 (422)
T 3d6k_A 332 SRLSEYGVAKWTSP-TG--GYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLH--------------NDPNNENIRL 394 (422)
T ss_dssp HHHGGGTCEEECCC-SB--SSCEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGG--------------CCTTSCEEEE
T ss_pred HhcCcCCceEEeCC-Cc--ceEEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCC--------------CCCCCCeEEE
Confidence 42 233565443 22 44556666543344555555 69999984 434210 0012379999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 409 GIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 409 ~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
+++. ++++++++++++|+++++++.
T Consensus 395 s~~~-~~~e~i~~~~~~l~~~l~~~~ 419 (422)
T 3d6k_A 395 APSL-PPVAELEVAMDGFATCVLMAA 419 (422)
T ss_dssp CCSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 9998 789999999999999988763
No 159
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.95 E-value=3.6e-27 Score=234.65 Aligned_cols=329 Identities=13% Similarity=0.096 Sum_probs=225.1
Q ss_pred CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+..|+|+.++. ..+|++.+++.+.+......+.. + ..+...++++++++++|.+ +++||+|||+
T Consensus 37 ~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~------~-~~~~~~~l~~~la~~~~~~--~v~~~~gg~~ 107 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNG------Y-TNEPVLRLAKKLIDATFAD--RVFFCNSGAE 107 (406)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTT------S-CCHHHHHHHHHHHHHSSCS--EEEEESSHHH
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCC------c-CCHHHHHHHHHHHhhCCCC--eEEEeCcHHH
Confidence 445688887763 23899999999998764322211 1 1256788999999999865 6999999999
Q ss_pred HHHHHHHHhhhhhc---CCC-CEEEEcCCCCcchHHHHHHHHh----------cCcEEEEEeCCCCCCCCHHHHHHhcCC
Q 040741 130 SNNVSIKGVMHFYK---DKK-RHVITTQTEHKCVLDSCRHLQQ----------EGFEITYLPVGADGIVNLDELRAAIRP 195 (457)
Q Consensus 130 a~~~al~~~~~~~~---~~g-~~vi~~~~~h~~~~~~~~~~~~----------~G~~v~~v~~~~~~~~d~~~le~~i~~ 195 (457)
|++++++.+..+.. +++ ++|++..+.|......+..+.. .+.++..++.+ |+++|++++++
T Consensus 108 a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~ 182 (406)
T 4adb_A 108 ANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN-----DINSASALIDD 182 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT-----CHHHHHTTCST
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC-----cHHHHHHHhcC
Confidence 99999998763110 144 7888777776666544443311 01244445433 89999999999
Q ss_pred CceEEEEecccccccccc-----ChHHHHHHHHhcCCcEEEehhhh-cCCC--cc--cCCCCcccEEEeccccccCC-CC
Q 040741 196 DTGLISVMAVNNEIGVIQ-----PMEEIGQICKEFKIPFHTDAAQA-LGKI--PV--DVEKWNVSLMSLSGHKIYGP-KG 264 (457)
Q Consensus 196 ~t~li~i~~~~~~~G~~~-----~l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~~~~~~~Di~~~s~~K~~g~-~G 264 (457)
++++|+++ ++|++|.+. ++++|.++|++||+++|+|++|+ ++.. ++ +......|+++ ++|.+|+ .+
T Consensus 183 ~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t--~sK~~~~G~r 259 (406)
T 4adb_A 183 STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLT--TAKALGGGFP 259 (406)
T ss_dssp TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSC
T ss_pred CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEE--echhhcCCCC
Confidence 99999999 788888654 48999999999999999999996 3221 11 11123467774 5797762 13
Q ss_pred ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCC-eEEe
Q 040741 265 VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDG-VVVN 343 (457)
Q Consensus 265 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~ 343 (457)
+|+++++++..+++.+...+.. .+.++..+.++.++++.+.. ++..++.+++++++.+.|++ +.. +.+.
T Consensus 260 ~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~-~~~~~~~~ 329 (406)
T 4adb_A 260 VGALLATEECARVMTVGTHGTT-------YGGNPLASAVAGKVLELINT--PEMLNGVKQRHDWFVERLNT-INHRYGLF 329 (406)
T ss_dssp CEEEEECHHHHHTCCTTSSCCS-------STTCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHH-HHHHHCCE
T ss_pred eEEEEEcHHHHhhhccCCcCCC-------CCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH-HHHhCCCc
Confidence 8999998876666655433221 25566677777677766533 67777888888888888776 211 1111
Q ss_pred CCCCCcccceEEEEEccc---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741 344 GSMERRYIGNLNLSFAYV---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE 418 (457)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed 418 (457)
.+ ....+.++.+.+... +..++...+ +||.+.++. .+++||+++..++++|
T Consensus 330 ~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~e~ 385 (406)
T 4adb_A 330 SE-VRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAG-----------------------GNVVRFAPALNVSEEE 385 (406)
T ss_dssp EE-EEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESS-----------------------TTEEEECCCTTCCHHH
T ss_pred eE-EEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecC-----------------------CCeEEEECCCCCCHHH
Confidence 10 011245556666542 355666666 688877642 2799999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 040741 419 VDRAIELTVKQVEKLRE 435 (457)
Q Consensus 419 id~~~~~l~~~~~~~~~ 435 (457)
+++++++|+++++++++
T Consensus 386 i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 386 VTTGLDRFAAACEHFVS 402 (406)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 160
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.95 E-value=4.3e-28 Score=242.29 Aligned_cols=339 Identities=16% Similarity=0.192 Sum_probs=220.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhh
Q 040741 63 MQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMH 140 (457)
Q Consensus 63 ~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~ 140 (457)
+.+.++.+|++.+++.+.+...+ ++|++..+............+++++++++|++++++++ ++||+|+.++++++.
T Consensus 36 ~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~-~sGs~a~~~a~~~~~- 113 (420)
T 3gbx_A 36 IASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQP-HSGSQANFAVYTALL- 113 (420)
T ss_dssp CTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCC-SSHHHHHHHHHHHHC-
T ss_pred eccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEe-cCcHHHHHHHHHHhc-
Confidence 34455689999999999886555 55554222211122234555778999999997755545 556999999999987
Q ss_pred hhcCCCCEEEEcCCCCcchHHHHHHH--HhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccChHH
Q 040741 141 FYKDKKRHVITTQTEHKCVLDSCRHL--QQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPMEE 217 (457)
Q Consensus 141 ~~~~~g~~vi~~~~~h~~~~~~~~~~--~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~l~~ 217 (457)
++|++|++..++|.++....... ...+..+..++.+.++.+|++++++++++ ++++|+++++++ |...|+++
T Consensus 114 ---~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~l~~ 188 (420)
T 3gbx_A 114 ---QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAY--SGVVDWAK 188 (420)
T ss_dssp ---CTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTC--CSCCCHHH
T ss_pred ---CCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCcc--CCccCHHH
Confidence 89999999999998854221111 11244556667777788999999999986 589998887776 45889999
Q ss_pred HHHHHHhcCCcEEEehhhhcCCC-----cccCCCCcccEEEecccccc-CCCCceEEEEec---CCCccccccccCCccc
Q 040741 218 IGQICKEFKIPFHTDAAQALGKI-----PVDVEKWNVSLMSLSGHKIY-GPKGVGALYMRR---RPRIRVEPLINGGGQE 288 (457)
Q Consensus 218 i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~---~~~~~~~~~~~~~~~~ 288 (457)
|.++|++||+++|+|++|+.|.. +.... .+|++++|+||.+ |+.| |+++.++ .....+......+
T Consensus 189 l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~~~~~--- 262 (420)
T 3gbx_A 189 MREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSAVFPS--- 262 (420)
T ss_dssp HHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhhcCCC---
Confidence 99999999999999999865432 22222 3899999999966 6776 9999886 3333333322211
Q ss_pred cccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc--ccchH
Q 040741 289 RGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY--VEGES 365 (457)
Q Consensus 289 ~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 365 (457)
..++++...+.++..++... .++++++.++..++++++.+.|.+ .++.+..+.. ...++.+.+.. .+...
T Consensus 263 ---~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~~~ 335 (420)
T 3gbx_A 263 ---AQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN--RGYKVVSGGT--ENHLFLLDLVDKNLTGKE 335 (420)
T ss_dssp -----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSC--SSSEEEEECGGGTCCHHH
T ss_pred ---CCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh--cCCeeccCCC--CCeEEEEEcCCCCCCHHH
Confidence 12456666666666566544 345788899999999999999998 5777765311 13444445432 34455
Q ss_pred HHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC----CCHHHHHHHHHHHHHHHHHHH
Q 040741 366 LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF----TTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 366 ~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~----~t~edid~~~~~l~~~~~~~~ 434 (457)
+...| +||.+.+...... .........+||+++.. .+++++++++++|++++++..
T Consensus 336 ~~~~l~~~gi~v~~~~~~~~-------------~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~ 397 (420)
T 3gbx_A 336 ADAALGRANITVNKNSVPND-------------PKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNIN 397 (420)
T ss_dssp HHHHHHHTTEECEEECCTTC-------------SSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCcEeccccCCCC-------------ccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCcc
Confidence 55555 5888877321100 00112235699998654 458999999999999987643
No 161
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.95 E-value=1.8e-27 Score=237.90 Aligned_cols=321 Identities=13% Similarity=0.054 Sum_probs=219.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHhh-ccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CC-CCC---cEEEeCChHHHHHHHH
Q 040741 62 DMQATTPVDPRVLDAMLPFYLS-RYGNPHSRTHLFGWESEVAVETARSQIADLI-GA-SPK---EIIFTSGATESNNVSI 135 (457)
Q Consensus 62 ~~~~~~~~~~~v~~a~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~-~~~---~i~~t~g~T~a~~~al 135 (457)
|..+..++++.+.+++.+.... ..+++. .....++++.+++++ +. .++ ++++|+|||+|+.+++
T Consensus 50 ~~~~~~~~~~~v~~a~~~~~~~~~~~y~~----------~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~ 119 (418)
T 3rq1_A 50 DEEGNLVFLKTVKEEYLSLSDSEHVGYAP----------IAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLI 119 (418)
T ss_dssp CTTSCBCCCHHHHHHHHTCCHHHHHSCCC----------TTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHH
T ss_pred CCCCCccccHHHHHHHHHhcccccCCCCC----------CCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHH
Confidence 3334557889998888765432 111111 112445666666655 11 244 7999999999999999
Q ss_pred HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCC----Cce-EEEEecc-ccc
Q 040741 136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIRP----DTG-LISVMAV-NNE 208 (457)
Q Consensus 136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~----~t~-li~i~~~-~~~ 208 (457)
+++. ++||+|+++.+.|..+...++.. |.+++.++.+ .++.+|++++++++++ +++ +++++++ +||
T Consensus 120 ~~l~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NP 192 (418)
T 3rq1_A 120 HNYT----EPGDEVLTADWYWGAYRVICSDT---GRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNP 192 (418)
T ss_dssp HHHS----CTTCEEEEESSCCTHHHHHHHHT---TCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTT
T ss_pred HHhc----CCCCEEEECCCCchhHHHHHHHc---CCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCC
Confidence 9988 89999999999999998877665 9999999985 5568999999999975 555 8888889 999
Q ss_pred cccccChH---HHHHHHH------hcCCcEEEehhhhcCCCc------c--cCCCCccc---EEEeccccccCCCC--ce
Q 040741 209 IGVIQPME---EIGQICK------EFKIPFHTDAAQALGKIP------V--DVEKWNVS---LMSLSGHKIYGPKG--VG 266 (457)
Q Consensus 209 ~G~~~~l~---~i~~l~~------~~~v~li~D~a~~~g~~~------~--~~~~~~~D---i~~~s~~K~~g~~G--~G 266 (457)
+|.+.|.+ +|+++|+ +||+++|+|++|...... + .......| +++.|++|.+|.+| +|
T Consensus 193 tG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G 272 (418)
T 3rq1_A 193 TGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVG 272 (418)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCE
T ss_pred CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcce
Confidence 99999955 4556666 899999999998532211 0 11111223 77889999877555 89
Q ss_pred EEEE---ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHhhcC
Q 040741 267 ALYM---RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI------AKKEMDYDHKRITALHDRLLNGIKEKL 337 (457)
Q Consensus 267 ~l~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~ 337 (457)
++++ +++..+++........ ......++.....++..+++. ..+.+.+..++++++++++.+.|.+ +
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~ 348 (418)
T 3rq1_A 273 AMIGISDDEEIADEFFEVNKSTS---RATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQ-V 348 (418)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHH---HHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred EEEEEeCCHHHHHHHHHHHHHHH---hhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 9998 6655555543321100 001124555666655555532 2233556778888999999999988 4
Q ss_pred CCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741 338 DGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT 415 (457)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t 415 (457)
++.+..+.. +.++ .+...+..++...| +||.+.+|. +++||+++ .++
T Consensus 349 -g~~~~~~~~---~~~~--~~~~~~~~~~~~~l~~~gi~v~~g~------------------------~~iRis~~-~~~ 397 (418)
T 3rq1_A 349 -GLPMLPYRG---GFFI--TIPTDSANAICEELKKEHIYVIALA------------------------NGIRIAAC-GIP 397 (418)
T ss_dssp -TCCCCCCCS---SSEE--EEECTTHHHHHHHHHHTTEECEECS------------------------SEEEEEGG-GSC
T ss_pred -CCCCCCCCc---eEEE--EcCCCCHHHHHHHHHhCCEEEecCC------------------------CCeEEEEe-cCC
Confidence 666554321 2222 22323556666666 689888763 68999987 468
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040741 416 EAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 416 ~edid~~~~~l~~~~~~~~ 434 (457)
++++++++++|++++++++
T Consensus 398 ~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 398 KCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp HHHHTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 162
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.95 E-value=3.7e-26 Score=226.61 Aligned_cols=318 Identities=13% Similarity=0.115 Sum_probs=223.7
Q ss_pred CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+..|+|+.++ ++.++++.+++.+.+... .+..+ . + ..+...++++.+++++|.+++++++++|||+
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~-~~~~~-~--~---~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~ 115 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL-MAMPQ-T--L---PTPMRGEFYRTLTAILPPELNRVFPVNSGTE 115 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC-CCCCT-T--S---CCHHHHHHHHHHHHTSCTTEEEEEEESSHHH
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhC-CCCcc-c--c---CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHH
Confidence 44568888654 358899999999998753 22111 1 1 2257889999999999887778999999999
Q ss_pred HHHHHHHHhhhhhcCCCCEEEEcCCCCc-chHHHHHHHHhcCcE------------EEEEeCCCCCCCCHHHHHHhcCCC
Q 040741 130 SNNVSIKGVMHFYKDKKRHVITTQTEHK-CVLDSCRHLQQEGFE------------ITYLPVGADGIVNLDELRAAIRPD 196 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~~vi~~~~~h~-~~~~~~~~~~~~G~~------------v~~v~~~~~~~~d~~~le~~i~~~ 196 (457)
|+.++++++..+ .++++|++..+.|+ ....++... |.+ +..++. .|+++++++++++
T Consensus 116 a~~~al~~~~~~--~~~~~vi~~~~~y~~~~~~~~~~~---g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~ 185 (395)
T 1vef_A 116 ANEAALKFARAH--TGRKKFVAAMRGFSGRTMGSLSVT---WEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEE 185 (395)
T ss_dssp HHHHHHHHHHHH--HSCCEEEEETTCCCCSSHHHHHTC---CCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTT
T ss_pred HHHHHHHHHHHH--hCCCeEEEEcCCcCCCchhhhhhc---CCcccccccCCCCCCeeEeCC-----CcHHHHHHHhccC
Confidence 999999876422 35677777776654 455454433 433 333332 3899999999999
Q ss_pred ceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC----cccCCCCcccEEEeccccccC-CCCce
Q 040741 197 TGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI----PVDVEKWNVSLMSLSGHKIYG-PKGVG 266 (457)
Q Consensus 197 t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~----~~~~~~~~~Di~~~s~~K~~g-~~G~G 266 (457)
+++|++++++|++|.+.| +++|.++|++||+++|+|++|+ ++.. +++.....+|++ |++|.++ +.++|
T Consensus 186 ~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G 263 (395)
T 1vef_A 186 TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLG 263 (395)
T ss_dssp EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCE
T ss_pred EEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceE
Confidence 999999999999999988 9999999999999999999998 3321 112222346876 6689655 44689
Q ss_pred EEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCC--eEEeC
Q 040741 267 ALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDG--VVVNG 344 (457)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~ 344 (457)
+++++++..+++..... ....+.+...+.++.++++.... +...++.+++++++.+.|++ ++. +...
T Consensus 264 ~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~- 332 (395)
T 1vef_A 264 VAVMREEVARSMPKGGH-------GTTFGGNPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKLRA-IPSPKIREV- 332 (395)
T ss_dssp EEEEEHHHHHTSCTTSS-------CCSSTTCHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHT-SCCTTEEEE-
T ss_pred EEEehHHHHhhhccCCc-------CCCcCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH-hhcCceEEE-
Confidence 99999875555543111 11225667777777778876654 45678888999999999988 542 1111
Q ss_pred CCCCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHH
Q 040741 345 SMERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDR 421 (457)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~ 421 (457)
...+.++.+.++. +..++...| +||.+.++. .+++||+++..++++|+++
T Consensus 333 ---~~~g~~~~~~~~~-~~~~l~~~l~~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~~~i~~ 385 (395)
T 1vef_A 333 ---RGMGLMVGLELKE-KAAPYIARLEKEHRVLALQAG-----------------------PTVIRFLPPLVIEKEDLER 385 (395)
T ss_dssp ---EEETTEEEEEESS-CSHHHHHHHHHHHCEECEESS-----------------------TTEEEECCCTTCCHHHHHH
T ss_pred ---EEEEEEEEEEEcC-hHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEeCCCCCCHHHHHH
Confidence 1124555666653 245565554 478776531 2799999998899999999
Q ss_pred HHHHHHHHH
Q 040741 422 AIELTVKQV 430 (457)
Q Consensus 422 ~~~~l~~~~ 430 (457)
++++|++++
T Consensus 386 ~~~~l~~~l 394 (395)
T 1vef_A 386 VVEAVRAVL 394 (395)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
No 163
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.95 E-value=1.4e-27 Score=240.88 Aligned_cols=301 Identities=15% Similarity=0.121 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeC
Q 040741 100 EVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPV 178 (457)
Q Consensus 100 ~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~ 178 (457)
.+...++++++++++|.+ ++++++||++|+.+++. +. ++|++|+++.+.|.++...+.. ++..|.++++++.
T Consensus 132 ~~~~~~l~~~la~~~g~~--~~i~~~sGt~al~~~l~-~~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 204 (464)
T 1ibj_A 132 NPTRDALESLLAKLDKAD--RAFCFTSGMAALSAVTH-LI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT 204 (464)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHT-TS----CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred CHHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-Hh----CCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC
Confidence 357888999999999975 58888999999988775 55 7999999999999998766543 3556999999987
Q ss_pred CCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc
Q 040741 179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK 258 (457)
Q Consensus 179 ~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K 258 (457)
+ |++++++++++++++|++++++||+|.+.|+++|+++|++||+++|+|++|+.|...... .++.|+++.|+||
T Consensus 205 ~-----d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~-~~~~div~~S~sK 278 (464)
T 1ibj_A 205 T-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL-ELGADIVMHSATK 278 (464)
T ss_dssp T-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGG-GTTCSEEEEETTT
T ss_pred C-----CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCEEEEECCcc
Confidence 5 899999999999999999999999999999999999999999999999999877542122 2578999999999
Q ss_pred cc-CCCCc--eEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040741 259 IY-GPKGV--GALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIK 334 (457)
Q Consensus 259 ~~-g~~G~--G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~ 334 (457)
++ |+.|+ |++++++ +..+++...... ..+..+.....++..+++.. ....++..++...+.+.++
T Consensus 279 ~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~-------~g~~~~~~~~~a~~~al~~~----~~r~~~~~~~~~~l~~~l~ 347 (464)
T 1ibj_A 279 FIAGHSDVMAGVLAVKGEKLAKEVYFLQNS-------EGSGLAPFDCWLCLRGIKTM----ALRIEKQQENARKIAMYLS 347 (464)
T ss_dssp TTTCSSCCCCEEEEECSHHHHHHHHHHHHH-------TTCBCCHHHHHHHHHHHTTH----HHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCcEEEEEEChHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhchhhH----HHHHHHHHHHHHHHHHHHH
Confidence 55 56564 9999985 444444433211 11233444444443444322 2222223333333333333
Q ss_pred hc-------------CCCeEEeCCCCCcccceEEEEEcccc-chHHHhcc--cCeEecccC----ccCCCCCC----hhH
Q 040741 335 EK-------------LDGVVVNGSMERRYIGNLNLSFAYVE-GESLLMGL--KEVAVSSGS----ACTSASLE----PSY 390 (457)
Q Consensus 335 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l--~~i~~~~g~----~~~~~~~~----~~~ 390 (457)
+. +|++.+..+.....++++.+.+.+.+ ...+...| .+|.++.|. .|.+.... +..
T Consensus 348 ~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~ 427 (464)
T 1ibj_A 348 SHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAE 427 (464)
T ss_dssp TCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSS
T ss_pred hCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHH
Confidence 30 34444444333334567777764322 23455555 588888886 44442111 100
Q ss_pred HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 391 VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 391 ~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
.+..+|+. .+.|||+++. ||+++++++|++++++
T Consensus 428 ~~~~~g~~----~~~iRlsvg~----edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 428 VREARGLT----EDLVRISAGI----EDVDDLISDLDIAFKT 461 (464)
T ss_dssp SSSSSSCC----TTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred HHHhcCCC----cCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence 11122322 3799999996 8999999999998763
No 164
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.95 E-value=2e-26 Score=235.09 Aligned_cols=329 Identities=14% Similarity=0.086 Sum_probs=223.2
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CC--CCCcEEEeCChHHHHHHHHHHhhhhhcCC
Q 040741 69 VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-GA--SPKEIIFTSGATESNNVSIKGVMHFYKDK 145 (457)
Q Consensus 69 ~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~--~~~~i~~t~g~T~a~~~al~~~~~~~~~~ 145 (457)
.|.++++++.+.+....+.. ...|....+..+..+.+.+.+.+.. |. +++++++|+|+++|+.+++.++. ++
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~----~~ 176 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNS-LGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV----SG 176 (498)
T ss_dssp SCHHHHHHHHHHHHHC-----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC----CC
T ss_pred CCHHHHHHHHHHHHhccCCC-CCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc----CC
Confidence 47777777777776532100 0011111111233444444444444 34 57789999999999999999888 66
Q ss_pred C----CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCC-----CceEEEEeccccccccccC
Q 040741 146 K----RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRP-----DTGLISVMAVNNEIGVIQP 214 (457)
Q Consensus 146 g----~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~-----~t~li~i~~~~~~~G~~~~ 214 (457)
| +.|+++.+.|+.+...++.. |++++.++++. ++.+|+++|++++++ ++++|++++++||||.+++
T Consensus 177 gd~~~d~Vlv~~p~y~~~~~~~~~~---g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s 253 (498)
T 3ihj_A 177 GGKSRTGVMIPIPQYPLYSAVISEL---DAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQS 253 (498)
T ss_dssp CGGGSEEEEEEESCCTHHHHHHHHT---TCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCC
T ss_pred CCCCCCEEEEeCCCchhHHHHHHHc---CCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCC
Confidence 6 49999999999998887766 99999999874 357899999999976 5899999999999999988
Q ss_pred ---hHHHHHHHHhcCCcEEEehhhhcCCCc-----ccCCCC----------cc-cEEEecccccc-CCCC--ceEEEE--
Q 040741 215 ---MEEIGQICKEFKIPFHTDAAQALGKIP-----VDVEKW----------NV-SLMSLSGHKIY-GPKG--VGALYM-- 270 (457)
Q Consensus 215 ---l~~i~~l~~~~~v~li~D~a~~~g~~~-----~~~~~~----------~~-Di~~~s~~K~~-g~~G--~G~l~~-- 270 (457)
+++|+++|++||+++++|++|+..... ..+... +. .+++.|+||.+ |.+| +|++++
T Consensus 254 ~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~ 333 (498)
T 3ihj_A 254 RKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVIN 333 (498)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEES
T ss_pred HHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEec
Confidence 667999999999999999999854321 111110 11 25677999966 5343 799984
Q ss_pred -ecCCCccccccccCCccccccccCCCChhHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 040741 271 -RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE----------IAKKEMDYDHKRITALHDRLLNGIKEKLDG 339 (457)
Q Consensus 271 -~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~----------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 339 (457)
+++.++.+..... ...+++.....++..+++ ...++..++.++++++++++.+.|.+ +|+
T Consensus 334 ~~~~l~~~l~~~~~--------~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~g 404 (498)
T 3ihj_A 334 LHPEIKGQLVKLLS--------VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ-VPG 404 (498)
T ss_dssp CCHHHHHHHHHHHH--------HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STT
T ss_pred CCHHHHHHHHHHHh--------ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence 4444444433221 112556666666655553 22334577888999999999999999 889
Q ss_pred eEEeCCCCCcccceEEEEEc------------cccchHH--Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCC
Q 040741 340 VVVNGSMERRYIGNLNLSFA------------YVEGESL--LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAH 403 (457)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~--~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~ 403 (457)
+.+..+.. +.++.+.+. +.+.+.+ ...| +||.+.+|..|... ...
T Consensus 405 ~~~~~p~g---g~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~----------------~~~ 465 (498)
T 3ihj_A 405 IHCNPLQG---AMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQR----------------EGT 465 (498)
T ss_dssp EECCCCCB---SSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCC----------------TTC
T ss_pred cEecCCCe---EEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC----------------CCC
Confidence 88765432 222222332 2223332 3333 59999999876531 123
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741 404 TSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 404 ~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~ 435 (457)
+++|+++. .++++++.++++|+++++++++
T Consensus 466 ~~~Ris~~--~~~e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 466 YHFRMTIL--PPVEKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp CBEEEECC--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 69999995 6899999999999999988753
No 165
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.95 E-value=1.6e-27 Score=240.00 Aligned_cols=281 Identities=15% Similarity=0.129 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC--
Q 040741 101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV-- 178 (457)
Q Consensus 101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~-- 178 (457)
....++++++++ +|++ +++++++|+|+|+.++++++. ++|++|++++++|.++..++... |+++++++.
T Consensus 57 ~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~----~~gd~Vlv~~~~h~s~~~~~~~~---G~~~~~v~~~~ 127 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS----QKKGDILMARNVHKSVLHALDIS---QQEGHFIETHQ 127 (446)
T ss_dssp SHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT----TSSSCEEECTTCCHHHHHHHHHH---TCCEEECEEEE
T ss_pred hHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc----CCCCEEEEecCccHHHHHHHHHc---CCeEEEEeCee
Confidence 467889999999 9987 569999999999999999997 89999999999999999988876 999999988
Q ss_pred CCC----CCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCCCcc
Q 040741 179 GAD----GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEKWNV 249 (457)
Q Consensus 179 ~~~----~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~~ 249 (457)
+.+ +.+|++++ +.+++++|++++ .|++|.+.|+++|.++|++||+++|+|++|+. .. +.+....++
T Consensus 128 ~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~g~ 202 (446)
T 2x3l_A 128 SPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNYQA 202 (446)
T ss_dssp CTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGGTC
T ss_pred ccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHcCC
Confidence 544 56788887 567889999999 56699999999999999999999999999986 22 344444578
Q ss_pred cEEEecccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Q 040741 250 SLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHD 327 (457)
Q Consensus 250 Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~ 327 (457)
|+++.|+|| ++|+.|+|+++++++.++ ..+...+. ..+..++++...++++.++++.+... .+++.++..++++
T Consensus 203 Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~~~~~---~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~ 278 (446)
T 2x3l_A 203 DYVVQSFHKTLPALTMGSVLYIHKNAPY-RENIIEYL---SYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIE 278 (446)
T ss_dssp SEEEECHHHHSSSCTTCEEEEEETTCTT-HHHHHHHH---HHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CEEEECCccccccccccEEEEEcCCcCC-HHHHHHHH---HHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999999 788888999999887654 22222111 11345678888888888788777653 3447777777777
Q ss_pred HHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEec-ccCccCCCCCChhHHHHHcCCCccCCCC
Q 040741 328 RLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVS-SGSACTSASLEPSYVLRALGVDEDMAHT 404 (457)
Q Consensus 328 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~-~g~~~~~~~~~~~~~l~~~g~~~~~~~~ 404 (457)
++++. ++.+.++.+ +..+.+.+++.++.++...| +||.+. +|. +
T Consensus 279 ~l~~~------g~~~~~~~~---~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g~------------------------~ 325 (446)
T 2x3l_A 279 CLENK------GFEMLQVDD---PLKLLIKYEGFTGHDIQNWFMNAHIYLELADD------------------------Y 325 (446)
T ss_dssp HHHHH------TCEEEECSS---TTEEEEECTTSCHHHHHHHHHHTTEEESEECS------------------------S
T ss_pred HHHHc------CCEECcCCC---CeEEEEEeCCcCHHHHHHHHHHCCCEEEecCC------------------------C
Confidence 77765 455655332 23455566555666777666 588775 332 6
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 405 SIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 405 ~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
.+||+++..++++++ +++++|+++++++
T Consensus 326 ~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp CEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred EEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 899999998899999 9999999988755
No 166
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.95 E-value=1e-26 Score=232.26 Aligned_cols=312 Identities=15% Similarity=0.162 Sum_probs=213.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcE
Q 040741 94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFE 172 (457)
Q Consensus 94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~ 172 (457)
.|++...+...++++++++++|.+. .+++++|++|+.++++++. ++||+|+++.+.|.+....+. .+...|++
T Consensus 75 ~y~r~~~p~~~~le~~lA~l~g~~~--~v~~~sG~~Ai~~al~al~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~ 148 (430)
T 3ri6_A 75 VYSRSSNPTVEDLEQRLKNLTGALG--VLALGSGMAAISTAILTLA----RAGDSVVTTDRLFGHTLSLFQKTLPSFGIE 148 (430)
T ss_dssp -----CCHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHTHHHHTTCE
T ss_pred cccCCCCHHHHHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHHHHHcCCE
Confidence 3444445788999999999999865 7788889999999999987 899999999999999888665 45667999
Q ss_pred EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741 173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM 252 (457)
Q Consensus 173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~ 252 (457)
+++++.+ |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+.. ......++|++
T Consensus 149 ~~~v~~~-----d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-~~~~~~g~div 222 (430)
T 3ri6_A 149 VRFVDVM-----DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-LEAKRLGVDIE 222 (430)
T ss_dssp EEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-CCGGGGTCSEE
T ss_pred EEEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-CChHHcCCEEE
Confidence 9999876 89999999999999999999999999999999999999999999999999997765 44445688999
Q ss_pred EeccccccCCCC---ceEEEEecCCCc----cccccc--cC--------CccccccccCCCChhHHHHHHHHHHHHHHhh
Q 040741 253 SLSGHKIYGPKG---VGALYMRRRPRI----RVEPLI--NG--------GGQERGIRSGTLPTPLIVGFGSACEIAKKEM 315 (457)
Q Consensus 253 ~~s~~K~~g~~G---~G~l~~~~~~~~----~~~~~~--~~--------~~~~~~~~~~t~~~~~~~al~~al~~~~~~~ 315 (457)
+.|++|++|+.| .|+++.+.+... +...+. .+ .........++.++...+.+... .+.+
T Consensus 223 ~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~----l~~l 298 (430)
T 3ri6_A 223 VLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLG----LETM 298 (430)
T ss_dssp EEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHH----HHHH
T ss_pred EECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhh----hhhH
Confidence 999999766542 466554432111 000000 00 00000011123333322222222 2345
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC---C----------cccc-eEEEEEccc-cchHHHhcc--cCeEeccc
Q 040741 316 DYDHKRITALHDRLLNGIKEKLDGVVVNGSME---R----------RYIG-NLNLSFAYV-EGESLLMGL--KEVAVSSG 378 (457)
Q Consensus 316 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~----------~~~~-~~~~~~~~~-~~~~~~~~l--~~i~~~~g 378 (457)
..+.++..++++++.+.|++ .|.+..+..+. . ..++ ++.|.++.. ....++..+ .++.++.|
T Consensus 299 ~~r~~~~~~na~~la~~L~~-~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~s~G 377 (430)
T 3ri6_A 299 ALRIERSCQNAQELAHWLLS-IPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALKLIRRATNIH 377 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCSSSEECSCCS
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCCcceecCCCC
Confidence 66777888999999999998 78876432221 1 1245 777777632 234566665 35667777
Q ss_pred CccCCCCCChhHHHH--------HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741 379 SACTSASLEPSYVLR--------ALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 379 ~~~~~~~~~~~~~l~--------~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~ 430 (457)
..++......+..++ ..|+. .+.||++++. |+++.+++.|++++
T Consensus 378 ~~~sli~~p~~~~h~~~~~~~~~~~g~~----~~liRlsvG~----E~~~dl~~dl~~al 429 (430)
T 3ri6_A 378 DNKSLILSPYHVIYALNSHEERLKLEIS----PAMMRLSVGI----EEIEDLKEDILQAL 429 (430)
T ss_dssp CSSCEEECTGGGC---------CGGGSC----TTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred CCCceeeCCcccccccCCHHHHHhcCCC----CCeEEEEecc----CCHHHHHHHHHHhh
Confidence 665532111111122 23444 4899999996 77888888888775
No 167
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.95 E-value=2e-26 Score=228.63 Aligned_cols=325 Identities=15% Similarity=0.133 Sum_probs=221.2
Q ss_pred CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+.-|||+.++. ..+|++.+++.+.+....-. . .....+...++++++++++| +++++|++|||+
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~------~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~e 104 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHT-S------NLYYNENIAAAAKNLAKASA--LERVFFTNSGTE 104 (395)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCC-C------TTSBCHHHHHHHHHHHHHHT--CSEEEEESSHHH
T ss_pred CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcccc-c------cccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHH
Confidence 345689987662 24899999999988653211 1 11123678899999999998 457999999999
Q ss_pred HHHHHHHHhhhhhc---CCCCEEEEcCCCCcchHHHHHHH----------HhcCcEEEEEeCCCCCCCCHHHHHHhcCCC
Q 040741 130 SNNVSIKGVMHFYK---DKKRHVITTQTEHKCVLDSCRHL----------QQEGFEITYLPVGADGIVNLDELRAAIRPD 196 (457)
Q Consensus 130 a~~~al~~~~~~~~---~~g~~vi~~~~~h~~~~~~~~~~----------~~~G~~v~~v~~~~~~~~d~~~le~~i~~~ 196 (457)
|++.+++.+..... .++++||+..+.|.+....+..+ ...+.++..++.+ |+++|+++++++
T Consensus 105 a~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~ 179 (395)
T 3nx3_A 105 SIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVNEK 179 (395)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhccCC
Confidence 99999998764321 24678888777665554332221 0112456666654 899999999999
Q ss_pred ceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--ccCC--CCcccEEEeccccccC-CCCce
Q 040741 197 TGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VDVE--KWNVSLMSLSGHKIYG-PKGVG 266 (457)
Q Consensus 197 t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~~~--~~~~Di~~~s~~K~~g-~~G~G 266 (457)
+++|+++++++++|.+.+ +++|.++|++||+++|+|++|+ +|... .... ...+|++++ +|.+| +.++|
T Consensus 180 ~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~--sK~~~~G~~~G 257 (395)
T 3nx3_A 180 TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTS--AKALGCGLSVG 257 (395)
T ss_dssp EEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGTTTSCCE
T ss_pred eEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEe--cccccCCCceE
Confidence 999999999999999988 9999999999999999999997 43221 1112 224576654 59544 34589
Q ss_pred EEEEecCC-CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh---cCCCeEE
Q 040741 267 ALYMRRRP-RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKE---KLDGVVV 342 (457)
Q Consensus 267 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~ 342 (457)
+++++++. .+.+.+...+.. ...++..+++..++++.+.+ +...++.+++.+++++.|.+ .++.+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (395)
T 3nx3_A 258 AFVINQKVASNSLEAGDHGST-------YGGNPLVCAGVNAVFEIFKE--EKILENVNKLTPYLEQSLDELINEFDFCKK 328 (395)
T ss_dssp EEEECHHHHHHHSCTTCCSSC-------BSCCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred EEEEchhhhhhhcCCcccCCC-------CCCCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 99998876 555655433222 14566777777777876654 33444455555555444433 1554443
Q ss_pred eCCCCCcccceEEEEEccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741 343 NGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV 419 (457)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi 419 (457)
.. ..+.++.+.+... +...+...+ +||.+.++. .+++||+++..++++|+
T Consensus 329 ~~----~~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----------------------~~~iRi~~~~~~t~e~i 381 (395)
T 3nx3_A 329 RK----GLGFMQGLSLDKSVKVAKVIQKCQENALLLISCG-----------------------ENDLRFLPPLILQKEHI 381 (395)
T ss_dssp EE----EETTEEEEEECTTSCHHHHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHH
T ss_pred EE----eEEEEEEEEeCCcchHHHHHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHH
Confidence 22 1245566666543 345566555 688887652 27999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040741 420 DRAIELTVKQVEK 432 (457)
Q Consensus 420 d~~~~~l~~~~~~ 432 (457)
++++++|++++++
T Consensus 382 ~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 382 DEMSEKLRKALKS 394 (395)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998763
No 168
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.95 E-value=1.2e-27 Score=237.41 Aligned_cols=318 Identities=17% Similarity=0.093 Sum_probs=216.4
Q ss_pred EEecCCCCCCCCHHHHHHHHH-HHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC------CCC--cEEEeCChHH
Q 040741 59 LYLDMQATTPVDPRVLDAMLP-FYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA------SPK--EIIFTSGATE 129 (457)
Q Consensus 59 i~l~~~~~~~~~~~v~~a~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~--~i~~t~g~T~ 129 (457)
.|+|..+++++++++.+++.+ .+.... .+.|+ ......++++.++++++. +++ ++++|+|||+
T Consensus 35 ~y~d~~~~~~~~~~v~~a~~~~~~~~~~------~~~y~--~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~ 106 (397)
T 3fsl_A 35 LYYNEDGIIPQLQAVAEAEARLNAQPHG------ASLYL--PMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSG 106 (397)
T ss_dssp CCCCTTSCCCCCHHHHHHHHHHHHSCCC------CCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred EEECCCCCccCcHHHHHHHHhhccCccc------cccCC--CCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHH
Confidence 366667777888999999999 775311 11111 112345677788887753 567 8999999999
Q ss_pred HHHHHHH--HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC--CCCCCCCHHHHHHhcC---CCceEEEE
Q 040741 130 SNNVSIK--GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV--GADGIVNLDELRAAIR---PDTGLISV 202 (457)
Q Consensus 130 a~~~al~--~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~--~~~~~~d~~~le~~i~---~~t~li~i 202 (457)
|++++++ ++. ++|++|++..+.|.++...++.. |.+++.++. +.++.+|+++++++++ ++++++++
T Consensus 107 a~~~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~ 179 (397)
T 3fsl_A 107 ALKVGADFLKRY----FPESGVWVSDPTWENHVAIFAGA---GFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLH 179 (397)
T ss_dssp HHHHHHHHHHHH----CTTCCEEEESSCCHHHHHHHHHT---TCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEEC
T ss_pred HHHHHHHHHHhc----CCCCeEEEeCCCchhHHHHHHHc---CCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEe
Confidence 9999954 445 78999999999999988776665 999999998 4567899999999998 67899999
Q ss_pred eccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc-----cc---C-CCCcccEEEeccccccCCCC--ceEE
Q 040741 203 MAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP-----VD---V-EKWNVSLMSLSGHKIYGPKG--VGAL 268 (457)
Q Consensus 203 ~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~-----~~---~-~~~~~Di~~~s~~K~~g~~G--~G~l 268 (457)
++++||+|.+.+ +++|+++|++||+++|+|++|+..... .. . ...+.++++.|++|.+|++| +|++
T Consensus 180 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~ 259 (397)
T 3fsl_A 180 PCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGL 259 (397)
T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEE
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEE
Confidence 999999999977 558999999999999999999754432 01 1 12245688899999988666 8998
Q ss_pred EEecC---CCccccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCC-
Q 040741 269 YMRRR---PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKLD- 338 (457)
Q Consensus 269 ~~~~~---~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~- 338 (457)
++... .+.++...... ..+.....++.....++..++... .+.+++..++++++++++.+.|.+ ++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~ 335 (397)
T 3fsl_A 260 SVMCEDAEAAGRVLGQLKA---TVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLST-EMP 335 (397)
T ss_dssp EEECSSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCT
T ss_pred EEecCCHHHHHHHHHHHHH---HHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 86422 12222111100 000111233444444444344321 345788889999999999999988 43
Q ss_pred --CeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC
Q 040741 339 --GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT 414 (457)
Q Consensus 339 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~ 414 (457)
++.+..+. .++ +.+...+.+.+...+ +||.+.+| + ||+++..
T Consensus 336 ~~~~~~~~~~----~~~--~~~~~~~~~~~~~~l~~~gi~v~~g-------------------------~--Ris~~~~- 381 (397)
T 3fsl_A 336 ERNFDYLLNQ----RGM--FSYTGLSAAQVDRLREEFGVYLIAS-------------------------G--RMCVAGL- 381 (397)
T ss_dssp TSCCTHHHHC----CSS--EEECCCCHHHHHHHHHTTCEECCTT-------------------------C--EEEGGGC-
T ss_pred CCCceeecCC----ceE--EEecCCCHHHHHHHHHhCCEEECCC-------------------------C--eEEEEec-
Confidence 44443321 121 122233444444444 58887654 2 8888754
Q ss_pred CHHHHHHHHHHHHHH
Q 040741 415 TEAEVDRAIELTVKQ 429 (457)
Q Consensus 415 t~edid~~~~~l~~~ 429 (457)
++++|++++++|+++
T Consensus 382 ~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 382 NTANVQRVAKAFAAV 396 (397)
T ss_dssp CTTTHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHhh
Confidence 457899999999875
No 169
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.95 E-value=1.3e-25 Score=222.88 Aligned_cols=321 Identities=18% Similarity=0.205 Sum_probs=222.0
Q ss_pred CCcEEecCCCC---C---CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQAT---T---PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~---~---~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+..|+|+.++ . +.++++.+++.+.+... +++.+ .+ ..+...++++.+++++|. +++++++|||+
T Consensus 38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~-~~~~~-----~~-~~~~~~~l~~~la~~~g~--~~v~~~~gg~~ 108 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL-IHCSN-----LF-WNRPQMELAELLSKNTFG--GKVFFANTGTE 108 (397)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC-SCCCT-----TS-EEHHHHHHHHHHHHTTTS--CEEEEESSHHH
T ss_pred CCCEEEECCccccccccCCCCHHHHHHHHHHHHhc-ccCcc-----cc-CCHHHHHHHHHHHHhcCC--CeEEEeCCHHH
Confidence 45568888654 3 35899999999998753 22211 11 125778899999999984 57999999999
Q ss_pred HHHHHHHHhhhhhc--CC-CCEEEEcCCC-CcchHHHHHHHHhcCcE------------EEEEeCCCCCCCCHHHHHHhc
Q 040741 130 SNNVSIKGVMHFYK--DK-KRHVITTQTE-HKCVLDSCRHLQQEGFE------------ITYLPVGADGIVNLDELRAAI 193 (457)
Q Consensus 130 a~~~al~~~~~~~~--~~-g~~vi~~~~~-h~~~~~~~~~~~~~G~~------------v~~v~~~~~~~~d~~~le~~i 193 (457)
|+.++++++..+.. ++ ++.|++..+. |.....++... |.+ +..++.+ |++++++++
T Consensus 109 a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~---g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l 180 (397)
T 2ord_A 109 ANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTAT---GQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKM 180 (397)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHS---BCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhcc---CChhhccccCCCCCCeeEecCC-----CHHHHHHHh
Confidence 99999998763210 03 4567666554 55565565544 543 6666653 899999999
Q ss_pred CCCceEEEEecccccccc-c---cChHHHHHHHHhcCCcEEEehhhh-cCCC--cccCCCC--cccEEEeccccccCC-C
Q 040741 194 RPDTGLISVMAVNNEIGV-I---QPMEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVEKW--NVSLMSLSGHKIYGP-K 263 (457)
Q Consensus 194 ~~~t~li~i~~~~~~~G~-~---~~l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~~~--~~Di~~~s~~K~~g~-~ 263 (457)
++++++|++++++||+|. + .++++|.++|++||+++|+|++|+ ++.. +..+... .+|++ |++|.+|+ .
T Consensus 181 ~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~ 258 (397)
T 2ord_A 181 SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGV 258 (397)
T ss_dssp CTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTS
T ss_pred hcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccCCCc
Confidence 999999999999999999 4 458899999999999999999997 2211 1211112 26866 55796663 3
Q ss_pred CceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCCe
Q 040741 264 GVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDGV 340 (457)
Q Consensus 264 G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~ 340 (457)
++|+++++++.. .+.+...+ ...+.+...+.++.++++...+ ++..++.+++++++.+.|++. ++.+
T Consensus 259 r~G~~~~~~~~~-~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 328 (397)
T 2ord_A 259 PIGAVIVNERAN-VLEPGDHG-------TTFGGNPLACRAGVTVIKELTK--EGFLEEVEEKGNYLMKKLQEMKEEYDVV 328 (397)
T ss_dssp CCEEEEECSTTC-CCCTTSSC-------CSSTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred CeEEEEEchHhc-ccCCCCcC-------CCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 589999988765 54331111 1124566777777777776544 567788888888888888761 2332
Q ss_pred EEeCCCCCcccceEEEEEcc-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHH
Q 040741 341 VVNGSMERRYIGNLNLSFAY-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA 417 (457)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~e 417 (457)
.... ..+.++.+.++. .+..++...| +||.+.++. .+.+||+++..++++
T Consensus 329 ~~~~----~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~-----------------------~~~iRis~~~~~~~e 381 (397)
T 2ord_A 329 ADVR----GMGLMIGIQFREEVSNREVATKCFENKLLVVPAG-----------------------NNTIRFLPPLTVEYG 381 (397)
T ss_dssp EEEE----EETTEEEEEECTTSCHHHHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHH
T ss_pred EEEE----EEeEEEEEEECChHHHHHHHHHHHHCCCEEccCC-----------------------CCEEEEECCcCCCHH
Confidence 2111 124555666653 2355666665 688887652 279999998888999
Q ss_pred HHHHHHHHHHHHHHH
Q 040741 418 EVDRAIELTVKQVEK 432 (457)
Q Consensus 418 did~~~~~l~~~~~~ 432 (457)
|+++++++|++++++
T Consensus 382 ~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 382 EIDLAVETLKKVLQG 396 (397)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988753
No 170
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.95 E-value=2.9e-27 Score=236.63 Aligned_cols=319 Identities=16% Similarity=0.110 Sum_probs=216.1
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC------CCC--cEEEeCChHHH
Q 040741 59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA------SPK--EIIFTSGATES 130 (457)
Q Consensus 59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~--~i~~t~g~T~a 130 (457)
+|+|..+.+++++.+.+++.+.+.... .+.|+ ......++++.++++++. +++ ++++|+|||+|
T Consensus 58 ~y~d~~~~~~~~~~v~~a~~~~~~~~~------~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~a 129 (420)
T 4f4e_A 58 VYTNEDGKIPLLRAVRDAEKARVEAGL------PRGYL--PIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGA 129 (420)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHTCC------CCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred eeECCCCCccCcHHHHHHHHHHhccCC------CCCCC--CCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHH
Confidence 355555667788999999999887511 11111 112345677777777643 456 79999999999
Q ss_pred HHHHHH--HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC--CCCCCCCHHHHHHhcC---CCceEEEEe
Q 040741 131 NNVSIK--GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV--GADGIVNLDELRAAIR---PDTGLISVM 203 (457)
Q Consensus 131 ~~~al~--~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~--~~~~~~d~~~le~~i~---~~t~li~i~ 203 (457)
++++++ ++. ++||+|+++.+.|.++...++.. |.+++.++. +.++.+|+++++++++ +++++++++
T Consensus 130 l~~~~~~~~~~----~~gd~Vlv~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~ 202 (420)
T 4f4e_A 130 LKIGADFLRTL----NPKAKVAISDPSWENHRALFDMA---GFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHA 202 (420)
T ss_dssp HHHHHHHHHHH----CTTCCEEEEESCCHHHHHHHHHT---TCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEEC
T ss_pred HHHHHHHHHHh----CCCCEEEEeCCCcHhHHHHHHHc---CCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeC
Confidence 999954 455 89999999999999988777665 999999998 3567899999999998 678999999
Q ss_pred ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCcc-----c---C-CCCcccEEEeccccccCCCC--ceEEE
Q 040741 204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIPV-----D---V-EKWNVSLMSLSGHKIYGPKG--VGALY 269 (457)
Q Consensus 204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~-----~---~-~~~~~Di~~~s~~K~~g~~G--~G~l~ 269 (457)
+++||||.+.+ +++|+++|++||+++|+|++|+...... . . ...+.++++.|++|.+|++| +|+++
T Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~ 282 (420)
T 4f4e_A 203 CCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALS 282 (420)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEE
Confidence 99999999977 6688999999999999999986443211 0 0 12345788999999988766 89987
Q ss_pred Eec---CCCccccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcC---
Q 040741 270 MRR---RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKL--- 337 (457)
Q Consensus 270 ~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~--- 337 (457)
+.. +.+.++...... ..+.....++.....++..++... .+.+++..++++++++++.+.|++ +
T Consensus 283 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~ 358 (420)
T 4f4e_A 283 IITDSKDEAARVLSQLKR---VIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKA-AGIE 358 (420)
T ss_dssp EECSSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCS
T ss_pred EEcCCHHHHHHHHHHHHH---HHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 522 111111111100 000111233444444444444331 345788889999999999999998 5
Q ss_pred CCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741 338 DGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT 415 (457)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t 415 (457)
+++.+..+. .++ +.+...+.+.+...+ +||.+.++ .||+++.. +
T Consensus 359 ~~~~~~~~~----~g~--~~~~~~~~~~~~~~l~~~gI~v~~~---------------------------~Ris~~~~-~ 404 (420)
T 4f4e_A 359 RDFSFINAQ----RGM--FSYSGLTSAQVDRLREEFGIYAVST---------------------------GRICVAAL-N 404 (420)
T ss_dssp SCCTHHHHS----CSS--EEECCCCHHHHHHHHHHHCEECCTT---------------------------SEEEGGGC-C
T ss_pred CCceeECCC----ccE--EEEeCCCHHHHHHHHHhCCEEecCC---------------------------CeEEEecC-C
Confidence 244443321 122 122334444444444 57777542 28998753 5
Q ss_pred HHHHHHHHHHHHHHH
Q 040741 416 EAEVDRAIELTVKQV 430 (457)
Q Consensus 416 ~edid~~~~~l~~~~ 430 (457)
++++++++++|++++
T Consensus 405 ~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 405 TRNLDVVANAIAAVL 419 (420)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 677999999999875
No 171
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.95 E-value=1.7e-26 Score=243.12 Aligned_cols=311 Identities=13% Similarity=0.044 Sum_probs=226.9
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHH-HHHHHhcCcEEEEEeCC
Q 040741 101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDS-CRHLQQEGFEITYLPVG 179 (457)
Q Consensus 101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~G~~v~~v~~~ 179 (457)
..+.++++.+|+++|++. .+++++|+|+|+.+++.+++ ++||+||++.++|.++..+ ++. .|+++++++..
T Consensus 173 ~~i~e~e~~lA~~~gae~-~i~v~nGtt~an~~ai~al~----~pGD~VLv~~~~H~S~~~~~~~l---~Ga~~v~v~~~ 244 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNADK-TYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKSVYNSALAM---AGGRPVYLQTN 244 (730)
T ss_dssp THHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHTTT---TCCEEEEECEE
T ss_pred HHHHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHhc----CCCCEEEEcCCchHHHHHHHHHH---CCCEEEEEeCC
Confidence 367899999999999874 37777777899999999998 8999999999999999887 444 49999988764
Q ss_pred CC-----CCCCHHHH-----HHhcCCC------c----eEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCC
Q 040741 180 AD-----GIVNLDEL-----RAAIRPD------T----GLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGK 239 (457)
Q Consensus 180 ~~-----~~~d~~~l-----e~~i~~~------t----~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~ 239 (457)
.+ |.+|++++ +++|+++ + ++++++++ |++|.+.|+++|+++|++||+++|+|+||+.+.
T Consensus 245 ~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~ 323 (730)
T 1c4k_A 245 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE 323 (730)
T ss_dssp ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred ccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEccccccc
Confidence 32 34788888 9999876 5 88989887 579999999999999999999999999996421
Q ss_pred ---------CcccCCCCccc----EEEecccc-ccCCCCceEEEEecCCCcc----ccccccCCccccccccCCCChhHH
Q 040741 240 ---------IPVDVEKWNVS----LMSLSGHK-IYGPKGVGALYMRRRPRIR----VEPLINGGGQERGIRSGTLPTPLI 301 (457)
Q Consensus 240 ---------~~~~~~~~~~D----i~~~s~~K-~~g~~G~G~l~~~~~~~~~----~~~~~~~~~~~~~~~~~t~~~~~~ 301 (457)
.+++....++| +++.|+|| +.|+.+.|+++++++.+.. +...... .....+.+++++...+
T Consensus 324 ~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~-~~~~~~~stsp~~~~i 402 (730)
T 1c4k_A 324 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFN-NSFNLFMSTSPFYPMY 402 (730)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHH-HHHHHHSCSSCCHHHH
T ss_pred ccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHH-HHHHHhCCCCCcHHHH
Confidence 12223234677 99999999 4556667888888764311 1100000 0001234578888889
Q ss_pred HHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC--------------------------------C
Q 040741 302 VGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME--------------------------------R 348 (457)
Q Consensus 302 ~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--------------------------------~ 348 (457)
+++.+|++.+.. +.....++..++++++++.|.+.++++.+.++.. .
T Consensus 403 aal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 482 (730)
T 1c4k_A 403 AALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYE 482 (730)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCT
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhcccc
Confidence 999888887765 4567788899999999999977458888876432 0
Q ss_pred -c-c------cceEEEEEcc------------ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741 349 -R-Y------IGNLNLSFAY------------VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI 406 (457)
Q Consensus 349 -~-~------~~~~~~~~~~------------~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i 406 (457)
. . +..+.+..++ .++..+...| +||.+.. .....+
T Consensus 483 ~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~-----------------------~~~~~i 539 (730)
T 1c4k_A 483 GYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEK-----------------------SDLNSI 539 (730)
T ss_dssp TCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSE-----------------------ECSSEE
T ss_pred ccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEE-----------------------CCCCeE
Confidence 0 0 1113344321 2334455445 3554432 123789
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHHHHH
Q 040741 407 RFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVK 444 (457)
Q Consensus 407 Ri~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~~~~ 444 (457)
|+.++..+|++++++++++|+++.+++.+..|+++...
T Consensus 540 r~~~s~g~t~e~i~~Ll~aL~~i~~~~~~~~~~~~~~p 577 (730)
T 1c4k_A 540 LFLMTPAETPAKMNNLITQLLQLQRLIEEDAPLKQVLP 577 (730)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHTTCBHHHHCH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcccccchhhhcc
Confidence 99999999999999999999999998877777776553
No 172
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.95 E-value=7.6e-27 Score=232.06 Aligned_cols=324 Identities=15% Similarity=0.043 Sum_probs=214.0
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC------CCcEEE--eCChH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS------PKEIIF--TSGAT 128 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~------~~~i~~--t~g~T 128 (457)
.-+|+|+.+++++.+++.+++.+.... .++... .+. ....++++.++++++.. ++++++ |+|||
T Consensus 35 ~g~~~d~~~~~~~~~~v~~a~~~~~~~-~~~~~Y-~~~------~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~ 106 (401)
T 7aat_A 35 VGAYRDDNGKPYVLNCVRKAEAMIAAK-KMDKEY-LPI------AGLADFTRASAELALGENSEAFKSGRYVTVQGISGT 106 (401)
T ss_dssp CCSCCCTTSCCCCCHHHHHHHHHHHHT-TCCCCC-CCT------TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred eeeEECCCCCEechHHHHHHHHHhccc-ccccCC-CCC------CCCHHHHHHHHHHhcCCCccccccCceEEEecCcch
Confidence 335778888888889999999988753 122111 111 12557777888877543 778877 99999
Q ss_pred HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcC---CCceEEEEe
Q 040741 129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIR---PDTGLISVM 203 (457)
Q Consensus 129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~---~~t~li~i~ 203 (457)
+|+++++.++..+. ++|++|+++.+.|..+...++.. |.+++.++.+ .++.+|++++++.++ +++++++++
T Consensus 107 ~al~~~~~~l~~~~-~~gd~Vlv~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~ 182 (401)
T 7aat_A 107 GSLRVGANFLQRFF-KFSRDVYLPKPSWGNHTPIFRDA---GLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHA 182 (401)
T ss_dssp HHHHHHHHHHHHHC-TTCCEEEEEESCCTTHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEES
T ss_pred HHHHHHHHHHHHhc-cCCCEEEEcCCCchhHHHHHHHc---CCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeC
Confidence 99999888765332 68999999999999998877665 9999999975 367899997766654 678999999
Q ss_pred ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc-c-----cC----CCCcccEEEeccccccCCCC--ceEE
Q 040741 204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP-V-----DV----EKWNVSLMSLSGHKIYGPKG--VGAL 268 (457)
Q Consensus 204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~-~-----~~----~~~~~Di~~~s~~K~~g~~G--~G~l 268 (457)
++|||||.+.+ +++|+++|++||+++++|++|...... . .+ ......+++.|+||.||++| +|++
T Consensus 183 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l 262 (401)
T 7aat_A 183 CAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAF 262 (401)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEE
Confidence 99999998877 778899999999999999998643221 1 01 12245688999999998777 8998
Q ss_pred EEecCCCc---cccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCC-
Q 040741 269 YMRRRPRI---RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKLD- 338 (457)
Q Consensus 269 ~~~~~~~~---~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~- 338 (457)
++.....+ .+...+... .......++......+..++... .+.+++..++++++++++.+.|.+ +.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~ 338 (401)
T 7aat_A 263 TVICRDAEEAKRVESQLKIL---IRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKK-EGS 338 (401)
T ss_dssp EEECSSHHHHHHHHHHHHHH---HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC
T ss_pred EEEeCCHHHHHHHHHHHHHH---HHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 87321111 111111000 00011133333222222223211 334678888999999999999988 42
Q ss_pred --CeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC
Q 040741 339 --GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT 414 (457)
Q Consensus 339 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~ 414 (457)
++.+..+. .++ +.+...+.+.+...+ +||.+. ..+||+++..+
T Consensus 339 ~~~~~~~~~~----~~~--~~~~~~~~~~~~~ll~~~gi~v~---------------------------~~~Ris~~~~~ 385 (401)
T 7aat_A 339 SHNWQHITDQ----IGM--FCFTGLKPEQVERLTKEFSIYMT---------------------------KDGRISVAGVA 385 (401)
T ss_dssp CSCCHHHHHC----CSS--EEECCCCHHHHHHHHHHHCEECC---------------------------TTCEEEGGGCC
T ss_pred CCCCceecCC----cce--EEecCCCHHHHHHHHHhCCEecc---------------------------CCCeEEeccCC
Confidence 23332211 222 223334444443333 477764 24699998765
Q ss_pred CHHHHHHHHHHHHHHH
Q 040741 415 TEAEVDRAIELTVKQV 430 (457)
Q Consensus 415 t~edid~~~~~l~~~~ 430 (457)
+ ++|++++++|++++
T Consensus 386 ~-~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 386 S-SNVGYLAHAIHQVT 400 (401)
T ss_dssp T-TTHHHHHHHHHHHH
T ss_pred h-hhHHHHHHHHHHHh
Confidence 4 55999999999875
No 173
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.95 E-value=5.6e-27 Score=234.00 Aligned_cols=320 Identities=16% Similarity=0.072 Sum_probs=215.5
Q ss_pred EecCCCCCCCCHHHHHHHHHHHhh-ccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CCC-CC---cEEEeCChHHHHHH
Q 040741 60 YLDMQATTPVDPRVLDAMLPFYLS-RYGNPHSRTHLFGWESEVAVETARSQIADLI-GAS-PK---EIIFTSGATESNNV 133 (457)
Q Consensus 60 ~l~~~~~~~~~~~v~~a~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~~-~~---~i~~t~g~T~a~~~ 133 (457)
|+++.+..++++.+.+++.+.... ..+++. .....++++.+++++ +.. ++ ++++|+|||+|+.+
T Consensus 47 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~----------~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~~ 116 (413)
T 3t18_A 47 LLDDKGKIIALPSVYDRLDEMDRSHIASYAP----------IEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIRS 116 (413)
T ss_dssp CBCTTSCBCCCHHHHHHHHHSCHHHHHSCCC----------TTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHH
T ss_pred ccCCCCCcCChHHHHHHHHhcCcccccCcCC----------CCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHHH
Confidence 444445567889999998775331 111111 012344555555544 221 34 79999999999999
Q ss_pred HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC-CCCCCCCHHHHHHhcCC----Cce-EEEEecc-c
Q 040741 134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV-GADGIVNLDELRAAIRP----DTG-LISVMAV-N 206 (457)
Q Consensus 134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~-~~~~~~d~~~le~~i~~----~t~-li~i~~~-~ 206 (457)
+++++. ++||+|+++.+.|..+...++.. |.+++.++. +.++.+|++++++++++ +++ +++++++ +
T Consensus 117 ~~~~~~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~ 189 (413)
T 3t18_A 117 AIFSYL----DEGDPLICHDYYWAPYRKICEEF---GRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLINSPGN 189 (413)
T ss_dssp HHHHHC----CSSCEEEEESSCCTHHHHHHHHH---TCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSC
T ss_pred HHHHhc----CCCCEEEECCCCcccHHHHHHHh---CCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCC
Confidence 999988 89999999999999998888776 999999998 45568999999999975 666 7888888 9
Q ss_pred cccccccChHH---HHHHHH------hcCCcEEEehhhhcCCC------cc--cCCCCccc---EEEeccccccCCCC--
Q 040741 207 NEIGVIQPMEE---IGQICK------EFKIPFHTDAAQALGKI------PV--DVEKWNVS---LMSLSGHKIYGPKG-- 264 (457)
Q Consensus 207 ~~~G~~~~l~~---i~~l~~------~~~v~li~D~a~~~g~~------~~--~~~~~~~D---i~~~s~~K~~g~~G-- 264 (457)
||+|.+.|.++ |+++|+ +||+++|+|++|..... .+ .......+ +++.|++|.+|.+|
T Consensus 190 NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r 269 (413)
T 3t18_A 190 NPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTAYGLR 269 (413)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTTCGGGC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEEecCccCCCcCcC
Confidence 99999999655 555666 89999999999853211 10 11111223 77789999888655
Q ss_pred ceEEEE---ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHhhc
Q 040741 265 VGALYM---RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA-----KKEMDYDHKRITALHDRLLNGIKEK 336 (457)
Q Consensus 265 ~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~ 336 (457)
+|++++ +++.++++........ ......++.....++..+++.. .+.+++..++++++++++.+.|.+
T Consensus 270 iG~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~- 345 (413)
T 3t18_A 270 SGAAVGISSSKEIIEEFEASLAHSA---RCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKE- 345 (413)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHH---HHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cEEEEEecCCHHHHHHHHHHHHHhh---hccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 899998 6665555543321100 0011235555555555555432 234567788889999999999998
Q ss_pred CCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC
Q 040741 337 LDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT 414 (457)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~ 414 (457)
+ ++.+..+.. +.++. +...+..++...| +||.+.+|. +++||+++..+
T Consensus 346 ~-g~~~~~~~~---~~~~~--~~~~~~~~~~~~l~~~gv~v~~g~------------------------~~iRis~~~~~ 395 (413)
T 3t18_A 346 N-KLTMIPYFG---GFFTF--IPTDKAFDIVKDLEKENIFTIPSA------------------------KGIRVAICGVG 395 (413)
T ss_dssp T-TCCCBCCCS---SSCEE--EECSCHHHHHHHHHHTTEECEECS------------------------SEEEECTTTSC
T ss_pred c-CCCccCCCc---eEEEE--eCCCCHHHHHHHHHhCCEEEecCC------------------------CceEEEEeeCC
Confidence 5 666654321 11222 2324556666666 689888762 79999998544
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 040741 415 TEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 415 t~edid~~~~~l~~~~~~~~ 434 (457)
.+++ +++|.+++++++
T Consensus 396 -~~~~---l~~l~~~l~~~~ 411 (413)
T 3t18_A 396 -EEKI---PKLVQRLAFYTN 411 (413)
T ss_dssp -GGGH---HHHHHHHHHHHH
T ss_pred -HHHH---HHHHHHHHHHHh
Confidence 4555 788888877764
No 174
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=6.3e-25 Score=219.60 Aligned_cols=323 Identities=15% Similarity=0.150 Sum_probs=219.9
Q ss_pred CCcEEecCCCCC---CC----CHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCh
Q 040741 56 GRPLYLDMQATT---PV----DPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGA 127 (457)
Q Consensus 56 ~~~i~l~~~~~~---~~----~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~ 127 (457)
.+..|+|+.++. ++ +|++.+++.+.+.... . .+ ...+. .+...++++.+++++|.+ +++++|++||
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~-~-~~-~~~~~---~~~~~~l~~~la~~~~~~~~~~v~~~~gg 113 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA-H-AA-ANDFY---NIPQLELAKKLVTYSPGNFQKKVFFSNSG 113 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC-C-CS-CSCSC---CHHHHHHHHHHHHHSSCSSCEEEEEESSH
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCc-c-cc-ccccC---CHHHHHHHHHHHHhCCCCcCCEEEEeCch
Confidence 445788886654 33 7999999999986531 1 00 01111 245678889999999987 7789999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCEEEEcCCCCc-chHHHHHHH-----HhcC-----cEEEEEeCCCCCC-------------
Q 040741 128 TESNNVSIKGVMHFYKDKKRHVITTQTEHK-CVLDSCRHL-----QQEG-----FEITYLPVGADGI------------- 183 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~-~~~~~~~~~-----~~~G-----~~v~~v~~~~~~~------------- 183 (457)
++|++++++.+.. .++++|++..+.|. ....+.... ...+ ..++.++.+.+..
T Consensus 114 ~ea~~~ai~~~~~---~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~ 190 (419)
T 2eo5_A 114 TEAIEASIKVVKN---TGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSE 190 (419)
T ss_dssp HHHHHHHHHHHHT---TSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHH
T ss_pred HHHHHHHHHHHHH---hhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchh
Confidence 9999999998763 13788888776554 454444321 1112 3577777764322
Q ss_pred ---CCHHHHH-HhcC-----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc----ccCC
Q 040741 184 ---VNLDELR-AAIR-----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP----VDVE 245 (457)
Q Consensus 184 ---~d~~~le-~~i~-----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~----~~~~ 245 (457)
+|+++|+ ++++ +++++|+++.++|++|.+.+ +++|.++|++||+++|+|++|+ ++... .+..
T Consensus 191 ~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~ 270 (419)
T 2eo5_A 191 LVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENF 270 (419)
T ss_dssp HHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred hHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhc
Confidence 4688999 8886 46778888877778998777 9999999999999999999997 54221 1222
Q ss_pred CCcccEEEeccccccC-C-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHH
Q 040741 246 KWNVSLMSLSGHKIYG-P-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRIT 323 (457)
Q Consensus 246 ~~~~Di~~~s~~K~~g-~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~ 323 (457)
...+|++ |++|.+| + .++|+++++++.+ .+ .... ....+.++..++++.++++...+ ..++++
T Consensus 271 ~~~~d~~--t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~-------~~t~~~n~~~~~aa~aal~~~~~----~~~~~~ 335 (419)
T 2eo5_A 271 NTVPDVI--TLAKALGGGIMPIGATIFRKDLD-FK-PGMH-------SNTFGGNALACAIGSKVIDIVKD----LLPHVN 335 (419)
T ss_dssp TCCCSEE--EECGGGGTTTSCCEEEEEEGGGC-CC--------------CCCCCHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred CCCCCEE--EecccccCCccceEEEEEchHhh-cC-Cccc-------CCCCCCCHHHHHHHHHHHHHHHH----HHHHHH
Confidence 2346766 5669554 3 5689999998765 44 2111 11224577777777788876543 778889
Q ss_pred HHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc-c-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741 324 ALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA-Y-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDE 399 (457)
Q Consensus 324 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~ 399 (457)
++++++.+.|.+ + ...+.+ .+.++.+.+. . .... +...| +||.+.++.
T Consensus 336 ~~~~~l~~~L~~-~-~~~~~~-----~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~-------------------- 387 (419)
T 2eo5_A 336 EIGKIFAEELQG-L-ADDVRG-----IGLAWGLEYNEKKVRDR-IIGESFKRGLLLLPAG-------------------- 387 (419)
T ss_dssp HHHHHHHHHHTT-S-SSEEEE-----ETTEEEEECSCHHHHHH-HHHHHHHTTEECEEET--------------------
T ss_pred HHHHHHHHHHHH-h-hhheEe-----eeEEEEEEEecCccHHH-HHHHHHHCCCEEecCC--------------------
Confidence 999999999988 4 111211 1445555552 1 1123 55555 688887642
Q ss_pred cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
.+++||+++..++++|+++++++|+++++++
T Consensus 388 ---~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 388 ---RSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp ---TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 2799999999999999999999999988753
No 175
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.94 E-value=3.2e-26 Score=225.40 Aligned_cols=309 Identities=12% Similarity=0.019 Sum_probs=206.6
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhhhhhcC
Q 040741 66 TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATESNNVSIKGVMHFYKD 144 (457)
Q Consensus 66 ~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a~~~al~~~~~~~~~ 144 (457)
+.++++++++++.. +++ + ......+++.+++++|++ ++++++++|||+|++++++++
T Consensus 39 ~~~~~~~v~~a~~~-----~~~---------~--~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~------ 96 (374)
T 2aeu_A 39 GFLIDEKDKALLNT-----YIG---------S--SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL------ 96 (374)
T ss_dssp CCCCCHHHHHHHTS-----TTH---------H--HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH------
T ss_pred CCCCCHHHHHHHHH-----hcC---------c--hHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC------
Confidence 55899999999861 111 1 123356777888999984 367999999999999998875
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceE-EEEeccccccc-cccChHHHHHHH
Q 040741 145 KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGL-ISVMAVNNEIG-VIQPMEEIGQIC 222 (457)
Q Consensus 145 ~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~l-i~i~~~~~~~G-~~~~l~~i~~l~ 222 (457)
+||+|+++.+.|++.......++..|++++.+ .|+++++++ ++++++ |++++++||+| ...++++|.++|
T Consensus 97 ~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~ 168 (374)
T 2aeu_A 97 KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-IDKDTLVIITGSTMDLKVIELENFKKVINTA 168 (374)
T ss_dssp CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-CCCccEEEEEccCCCCCCCCcccHHHHHHHH
Confidence 68999999997776554333445569999888 289999999 888999 99999999999 888999999999
Q ss_pred HhcCCcEEEehhhhcCCC-cc-c--CCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCCh
Q 040741 223 KEFKIPFHTDAAQALGKI-PV-D--VEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPT 298 (457)
Q Consensus 223 ~~~~v~li~D~a~~~g~~-~~-~--~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 298 (457)
++||+++|+|++++.+.. +. . ....+.|+++.|+||.+++.++|+++++++.++++...... ..++++.
T Consensus 169 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~~G~~~~~~~~~~~l~~~~~~-------~~~~~~~ 241 (374)
T 2aeu_A 169 KNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTK-------FGLEAQP 241 (374)
T ss_dssp HHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHT-------TTCBCCH
T ss_pred HHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcceEEEEECHHHHHHHHHhhcc-------ccCCCCH
Confidence 999999999999986531 11 1 11246799999999965444689999998766665543321 1125566
Q ss_pred hHHHHHHHHHHHHHH-hhHHHHHHHHHH----HHHHHHHHhhcC---CCeEEeCCCCCcccceEEEEEccccc------h
Q 040741 299 PLIVGFGSACEIAKK-EMDYDHKRITAL----HDRLLNGIKEKL---DGVVVNGSMERRYIGNLNLSFAYVEG------E 364 (457)
Q Consensus 299 ~~~~al~~al~~~~~-~~~~~~~~~~~~----~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 364 (457)
..+.++..+++.... .+++..+..+.+ .+.+.+.|.. + +++.+...+ .+.+......... .
T Consensus 242 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~ 316 (374)
T 2aeu_A 242 PLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKA-IDDNINIVYERTP----TGFVIKRVYKDDTINIKKLI 316 (374)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTT-TCTTEEEEEEECS----SEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccCcceeeCC----ceEEEEeecccccccccchH
Confidence 666666666655322 223333333333 4555555555 3 345543322 2222222221111 1
Q ss_pred HHHh-cc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHH
Q 040741 365 SLLM-GL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR-FTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 365 ~~~~-~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~-~~t~edid~~~~~l~~~~~~~~ 434 (457)
++.. .+ +||.+.+|..+. ...+++||+++. ..+++++++++++++++++++.
T Consensus 317 ~~~~~ll~~~gV~v~~g~~~~------------------~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 317 EIGFNLLKNYGIITITVAGMP------------------GASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp HHHHHHHHHHCEECSTTSSSC------------------SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCEEEecCCCCC------------------CCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 1332 23 589988775321 123689999975 2334458999999998887764
No 176
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.94 E-value=2.1e-26 Score=232.24 Aligned_cols=341 Identities=16% Similarity=0.171 Sum_probs=230.1
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHH-HHHHHHhCCCCCcEEE-eCChHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETAR-SQIADLIGASPKEIIF-TSGATESNN 132 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~-~~la~~~g~~~~~i~~-t~g~T~a~~ 132 (457)
+.|.| .++.+++++++++++.+.+.+.+ ++|.+ .+..+....+..+++. +++++++|++. +.+ ++|||+|+.
T Consensus 46 ~~i~l-~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~~e~~a~~~la~~~g~~~--~~v~~~sGs~a~~ 121 (447)
T 3h7f_A 46 DTLEM-IASENFVPRAVLQAQGSVLTNKYAEGLPGR-RYYGGCEHVDVVENLARDRAKALFGAEF--ANVQPHSGAQANA 121 (447)
T ss_dssp HSEEC-CTTCCCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHH
T ss_pred CceeE-ecCCCCCCHHHHHHHHHHhcCCccccCCcc-cccCccHHHHHHHHHHHHHHHHHcCCCc--eEEEeCCHHHHHH
Confidence 34555 45667889999999999886544 33433 2223444444556555 99999999875 444 888999999
Q ss_pred HHHHHhhhhhcCCCCEEEEcCCCCcchH-HHH--HHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcC-CCceEEEEecccc
Q 040741 133 VSIKGVMHFYKDKKRHVITTQTEHKCVL-DSC--RHLQQEGFEITYLPVG-ADGIVNLDELRAAIR-PDTGLISVMAVNN 207 (457)
Q Consensus 133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~-~~~--~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~-~~t~li~i~~~~~ 207 (457)
.+++++. ++||+|++..++|.++. ... ... ..+..++.++.+ .++.+|+++++++++ .++++|+++.++|
T Consensus 122 ~a~~~~~----~~Gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~ 196 (447)
T 3h7f_A 122 AVLHALM----SPGERLLGLDLANGGHLTHGMRLNFS-GKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAY 196 (447)
T ss_dssp HHHHHHC----CTTCEEEEECGGGTCCGGGTCTTSHH-HHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSC
T ss_pred HHHHHhc----CCCCEEEecCcccccccchhhhhhhc-CCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCC
Confidence 9999988 89999999999987722 111 111 125677777776 567899999999985 4688888888888
Q ss_pred ccccccChHHHHHHHHhcCCcEEEehhhhcCC----CcccCCCCcccEEEeccccc-cCCCCceEEEEecCCCccccccc
Q 040741 208 EIGVIQPMEEIGQICKEFKIPFHTDAAQALGK----IPVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRRPRIRVEPLI 282 (457)
Q Consensus 208 ~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~~~~ 282 (457)
+++. ++++|.++|++||+++|+|++|+.|. ...+.. .++|++++|+||. .||.| |+++.+++..+++....
T Consensus 197 ~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~~l~~~~ 272 (447)
T 3h7f_A 197 PRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGKQQYAKAINSAV 272 (447)
T ss_dssp CSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEECGGGHHHHHHHH
T ss_pred CCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEECHHHHHHHhhhc
Confidence 7665 99999999999999999999986542 111211 2579999999995 45776 99999876655554433
Q ss_pred cCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcC----CCeEEeCCCCCcccceEEEE
Q 040741 283 NGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKL----DGVVVNGSMERRYIGNLNLS 357 (457)
Q Consensus 283 ~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~ 357 (457)
..+ ..++++...++++..++....+ ++++..++..++++++.+.|.+ . +++.+...... ...+.+.
T Consensus 273 ~~~------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~g~~~~~~~~~--~~~~~~~ 343 (447)
T 3h7f_A 273 FPG------QQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMA-PDVAKAGVSVVSGGTD--VHLVLVD 343 (447)
T ss_dssp TTT------TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTS-HHHHHTTCEEGGGSCS--SSEEEEE
T ss_pred CCc------ccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh-ccccCCCeEEecCCCC--CCEEEEE
Confidence 221 2346666667777777766543 5788889999999999999987 4 47777642211 2334444
Q ss_pred Ecc--ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC----CCHHHHHHHHHHHHHH
Q 040741 358 FAY--VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF----TTEAEVDRAIELTVKQ 429 (457)
Q Consensus 358 ~~~--~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~----~t~edid~~~~~l~~~ 429 (457)
+.. .+...+...+ .||.+....... ...+....+.+||++... .+++|+++++++|+++
T Consensus 344 ~~~~~~~~~~~~~~l~~~GI~v~~~~i~~-------------~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~ 410 (447)
T 3h7f_A 344 LRDSPLDGQAAEDLLHEVGITVNRNAVPN-------------DPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATA 410 (447)
T ss_dssp CTTSSCCHHHHHHHHHHTTEECBC--------------------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHCCeEEecccCCC-------------CCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHH
Confidence 432 2344444444 488876321100 000112236899997654 5789999999998887
Q ss_pred HHH
Q 040741 430 VEK 432 (457)
Q Consensus 430 ~~~ 432 (457)
+++
T Consensus 411 l~~ 413 (447)
T 3h7f_A 411 LAT 413 (447)
T ss_dssp HHS
T ss_pred Hhc
Confidence 654
No 177
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.94 E-value=4.3e-25 Score=221.10 Aligned_cols=327 Identities=12% Similarity=0.090 Sum_probs=220.1
Q ss_pred CcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHH
Q 040741 57 RPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATE 129 (457)
Q Consensus 57 ~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~ 129 (457)
+..|+|+.++. ..++++.+++.+.+... ++... .+...+...++++.|+++++.+ +++++||+||++
T Consensus 40 g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~-~~~~~-----~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~ 113 (426)
T 1sff_A 40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL-SHTCF-----QVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSE 113 (426)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC-SCCCT-----TTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHH
T ss_pred CCEEEEcccChhhcccCCCCHHHHHHHHHHHHhC-CCccc-----cccCCHHHHHHHHHHHHhCCcccccEEEEeCchHH
Confidence 34577765332 36899999999988642 22110 1222357788999999999323 368999999999
Q ss_pred HHHHHHH---HhhhhhcCCCCEEEEcCCCCc-chHHHHHHHHhcCc-------------EEEEEeCCC-----CCCCCHH
Q 040741 130 SNNVSIK---GVMHFYKDKKRHVITTQTEHK-CVLDSCRHLQQEGF-------------EITYLPVGA-----DGIVNLD 187 (457)
Q Consensus 130 a~~~al~---~~~~~~~~~g~~vi~~~~~h~-~~~~~~~~~~~~G~-------------~v~~v~~~~-----~~~~d~~ 187 (457)
|++++++ .+. +++ +|++..+.|. ....++... |. .++.++.+. ++.+|++
T Consensus 114 a~~~~~~~a~~~~----~~~-~vi~~~p~y~~~~~~~~~~~---g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~ 185 (426)
T 1sff_A 114 AVENAVKIARAAT----KRS-GTIAFSGAYHGRTHYTLALT---GKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIA 185 (426)
T ss_dssp HHHHHHHHHHHHH----TCC-EEEEETTCCCCSSHHHHHHS---SCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHH
T ss_pred HHHHHHHHHHHhh----CCC-eEEEECCCcCCCchHhhhhc---CCccccccccCCCCCCcEEeCCCccccccchHHHHH
Confidence 9999988 444 566 6777666554 454455443 33 266777653 2246899
Q ss_pred HHHHhcC-----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--c--ccCCCCcccEEE
Q 040741 188 ELRAAIR-----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--P--VDVEKWNVSLMS 253 (457)
Q Consensus 188 ~le~~i~-----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~--~~~~~~~~Di~~ 253 (457)
+|+++++ +++++|++++..+++|.+.+ +++|.++|++||+++|+|++|+ ++.. . ++.....+|++
T Consensus 186 ~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~- 264 (426)
T 1sff_A 186 SIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT- 264 (426)
T ss_dssp HHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE-
T ss_pred HHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEE-
Confidence 9999886 46778888655444997777 9999999999999999999998 3211 1 12222246766
Q ss_pred eccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040741 254 LSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLN 331 (457)
Q Consensus 254 ~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~ 331 (457)
|++|.+|+ | +|+++++++.++.+...... ...+.++..++++.++++.+.+ ....++.+++++++++
T Consensus 265 -s~sK~~~~-GlriG~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~ 333 (426)
T 1sff_A 265 -TFAKSIAG-GFPLAGVTGRAEVMDAVAPGGLG-------GTYAGNPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKD 333 (426)
T ss_dssp -EECGGGGT-SSCCEEEEEEHHHHTTSCTTSBC-------CSSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHH
T ss_pred -EEcccccC-CCceEEEEEcHHHHhhhccCCcC-------cCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHH
Confidence 66698776 6 79999998766555432111 1124567777777778887765 3456677777777777
Q ss_pred HHhhc---CCCeEEeCCCCCcccceEEEEEcc---------ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741 332 GIKEK---LDGVVVNGSMERRYIGNLNLSFAY---------VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV 397 (457)
Q Consensus 332 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~ 397 (457)
.|.+. ++.+....+ .+.++.+.+.. .+..++...| +||.+.+|...
T Consensus 334 ~l~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~---------------- 393 (426)
T 1sff_A 334 GLLAIAEKHPEIGDVRG----LGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY---------------- 393 (426)
T ss_dssp HHHHHHHTCTTEEEEEE----ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTT----------------
T ss_pred HHHHHHHhCCCeEEEEE----EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCC----------------
Confidence 77651 343332211 14555666632 1234555555 68988877521
Q ss_pred CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
.+++||+++..++++|+++++++|++++++++
T Consensus 394 -----~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~ 425 (426)
T 1sff_A 394 -----YNVLRILVPLTIEDAQIRQGLEIISQCFDEAK 425 (426)
T ss_dssp -----SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred -----CCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 27999999988999999999999999988764
No 178
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.94 E-value=1.2e-24 Score=218.43 Aligned_cols=327 Identities=15% Similarity=0.182 Sum_probs=217.2
Q ss_pred CCcEEecCCC---CCC---CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQA---TTP---VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~---~~~---~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+..|+|+.+ ..+ .+|++.+++.+.+.... +... ++ ..+...++++.+++++|. ++++|++|||+
T Consensus 63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~-~~~~-----~~-~~~~~~~l~~~la~~~g~--~~v~~~~sGse 133 (433)
T 1z7d_A 63 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT-ICSR-----AF-FSVPLGICERYLTNLLGY--DKVLMMNTGAE 133 (433)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS-CCCT-----TS-EEHHHHHHHHHHHHHHTC--SEEEEESSHHH
T ss_pred CCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCC-CccC-----Cc-CCHHHHHHHHHHHhhcCC--CeEEEeCCHHH
Confidence 4456888765 222 78999999999986532 2111 11 225678899999999984 56999999999
Q ss_pred HHHHHHHHhhhhh-c----CCC-CEEEEcCCCCcch-HHHHHHHHh----cC-----cEEEEEeCCCCCCCCHHHHHHhc
Q 040741 130 SNNVSIKGVMHFY-K----DKK-RHVITTQTEHKCV-LDSCRHLQQ----EG-----FEITYLPVGADGIVNLDELRAAI 193 (457)
Q Consensus 130 a~~~al~~~~~~~-~----~~g-~~vi~~~~~h~~~-~~~~~~~~~----~G-----~~v~~v~~~~~~~~d~~~le~~i 193 (457)
|++++++.+..+. . .+| ++||+.++.|.+. ..++..... .+ ..+..++.+ |++++++++
T Consensus 134 A~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l 208 (433)
T 1z7d_A 134 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEEL 208 (433)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTT-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHh
Confidence 9999999865321 0 245 8888887666544 333333210 01 244555543 899999999
Q ss_pred -CCCceEEEEecccccccccc----ChHHHHHHHHhcCCcEEEehhhh-cCCC--cc--cCCCCcccEEEeccccccCCC
Q 040741 194 -RPDTGLISVMAVNNEIGVIQ----PMEEIGQICKEFKIPFHTDAAQA-LGKI--PV--DVEKWNVSLMSLSGHKIYGPK 263 (457)
Q Consensus 194 -~~~t~li~i~~~~~~~G~~~----~l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~~~~~~~Di~~~s~~K~~g~~ 263 (457)
++++++|+++++++++|.+. ++++|.++|++||+++|+|++|+ +|.. .+ +.....+|++ |++|.+|+.
T Consensus 209 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G 286 (433)
T 1z7d_A 209 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSGG 286 (433)
T ss_dssp TSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTT
T ss_pred CCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccccCC
Confidence 57889999998888899876 59999999999999999999997 3321 11 1112347877 566966632
Q ss_pred --CceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CC
Q 040741 264 --GVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LD 338 (457)
Q Consensus 264 --G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~ 338 (457)
.+|+++++++..+.+.+...+. ..+.++..++++.++++.+.+ +...++.+++.+++++.|++. ++
T Consensus 287 ~~~~G~v~~~~~~~~~l~~~~~~~-------t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~ 357 (433)
T 1z7d_A 287 HYPISAVLANDDIMLVIKPGEHGS-------TYGGNPLAASICVEALNVLIN--EKLCENAEKLGGPFLENLKRELKDSK 357 (433)
T ss_dssp SSCCEEEEECHHHHTTCCTTCCCC-------TTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCCeEEEEECHHHHhhhccccccc-------cCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3899999987666555422111 114566677777778877665 356777788888888887651 33
Q ss_pred CeEEeCCCCCcccceEEEEEccc--cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC
Q 040741 339 GVVVNGSMERRYIGNLNLSFAYV--EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT 414 (457)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~ 414 (457)
.+.... ..+.++.+.+... +...+...| +||.+.++. .+.+||+++..+
T Consensus 358 ~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~iRi~~~~~~ 410 (433)
T 1z7d_A 358 IVRDVR----GKGLLCAIEFKNELVNVLDICLKLKENGLITRDVH-----------------------DKTIRLTPPLCI 410 (433)
T ss_dssp TEEEEE----EETTEEEEEECTTTCCHHHHHHHHHHTTEECCEET-----------------------TTEEEECCCTTC
T ss_pred CeEEEE----eeeeEEEEEEccChhHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEECCcCC
Confidence 322211 1245566666532 345566655 688876531 279999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 040741 415 TEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 415 t~edid~~~~~l~~~~~~~~ 434 (457)
+++|+++++++|+++++++.
T Consensus 411 t~e~i~~~l~~l~~~l~~~~ 430 (433)
T 1z7d_A 411 TKEQLDECTEIIVKTVKFFD 430 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 179
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.94 E-value=1.7e-26 Score=234.13 Aligned_cols=345 Identities=14% Similarity=0.141 Sum_probs=220.2
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK 136 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~ 136 (457)
+..|||+.+..+. +++.+++.+.+... . ..|+. .+...+++++++++++. ++++||+|||+|++++++
T Consensus 42 g~~ylD~~~~~~~-~~v~~a~~~~~~~~--~-----~~y~~--~~~~~~l~~~la~~~~~--~~v~~t~ggt~A~~~al~ 109 (467)
T 1ax4_A 42 SAVYIDLLTDSGT-NAMSDHQWAAMITG--D-----EAYAG--SRNYYDLKDKAKELFNY--DYIIPAHQGRGAENILFP 109 (467)
T ss_dssp GGCSEECSCSSSC-CCEEHHHHHHHHTC--C-----CCSSS--CHHHHHHHHHHHHHHCC--CEEEEESSHHHHHHHHHH
T ss_pred CceeeecccCcCC-HHHHHHHHHHHhhc--c-----ccccc--CccHHHHHHHHHHHcCC--CcEEEcCCcHHHHHHHHH
Confidence 3458888666655 67777777765421 1 11111 14677899999999997 469999999999999999
Q ss_pred HhhhhhcCCCCE---EEEcCCCCcchHHHHHHHHhcCcEEEEEeCC----------CCCCCCHHHHHHhcCC----CceE
Q 040741 137 GVMHFYKDKKRH---VITTQTEHKCVLDSCRHLQQEGFEITYLPVG----------ADGIVNLDELRAAIRP----DTGL 199 (457)
Q Consensus 137 ~~~~~~~~~g~~---vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~----------~~~~~d~~~le~~i~~----~t~l 199 (457)
++..+...+|++ |+++.+.|..+..++.. .|.+++.++.. .++.+|+++|++++++ ++++
T Consensus 110 ~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~ 186 (467)
T 1ax4_A 110 VLLKYKQKEGKAKNPVFISNFHFDTTAAHVEL---NGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVA 186 (467)
T ss_dssp HHHHHHHHTTCCSSCEEEESSCCHHHHHHHHH---TTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEE
T ss_pred HHHHhhccCCCccceEEEeccccchhhHHHhc---cCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeE
Confidence 987211118888 88884333444444444 38888776532 1457899999999974 6899
Q ss_pred EEEecccccc-ccccC---hHHHHHHHHhcCCcEEEehhhhc-----------CCCcccCCC------CcccEEEecccc
Q 040741 200 ISVMAVNNEI-GVIQP---MEEIGQICKEFKIPFHTDAAQAL-----------GKIPVDVEK------WNVSLMSLSGHK 258 (457)
Q Consensus 200 i~i~~~~~~~-G~~~~---l~~i~~l~~~~~v~li~D~a~~~-----------g~~~~~~~~------~~~Di~~~s~~K 258 (457)
|++++++|++ |.+.+ +++|+++|++||+++|+|+++++ +....++.. ..+|++++|+||
T Consensus 187 vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK 266 (467)
T 1ax4_A 187 IVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKK 266 (467)
T ss_dssp EEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTS
T ss_pred EEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccc
Confidence 9999999999 77766 67899999999999999998765 222222211 136899999999
Q ss_pred ccCCC-CceEEEEe-c-CCCcccccccc--CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040741 259 IYGPK-GVGALYMR-R-RPRIRVEPLIN--GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGI 333 (457)
Q Consensus 259 ~~g~~-G~G~l~~~-~-~~~~~~~~~~~--~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l 333 (457)
.+|++ | |+++.+ + +..+++..... ++. ...+..+...+.++..+++...+ +...++..++.+++.+.|
T Consensus 267 ~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L 339 (467)
T 1ax4_A 267 DPLLNIG-GLVAIRDNEEIFTLARQRCVPMEGF----VTYGGLAGRDMAAMVQGLEEGTE--EEYLHYRIGQVKYLGDRL 339 (467)
T ss_dssp TTCCSSC-EEEEESSCHHHHHHHHHHHHHHTCS----TTTTTCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcc-eEEEeCCHHHHHHHHHhhccccccc----cccCCccchHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHH
Confidence 88865 4 677666 3 44444432221 111 12234444444444434433221 223444456778888888
Q ss_pred hhcCCCeEEeCCCCCcccceEEEE-------Ec--cccchHHHhcc---cCeEecc-cCccCCCCCChhHHHHHcCCCcc
Q 040741 334 KEKLDGVVVNGSMERRYIGNLNLS-------FA--YVEGESLLMGL---KEVAVSS-GSACTSASLEPSYVLRALGVDED 400 (457)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~l---~~i~~~~-g~~~~~~~~~~~~~l~~~g~~~~ 400 (457)
.+ +++.+..+. . ...+.+. ++ ..+..++...| +||.+.+ |.++.... + ..|....
T Consensus 340 ~~--~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~--~-----~~g~~~~ 407 (467)
T 1ax4_A 340 RE--AGIPIQYPT-G--GHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRD--P-----ATGEQKH 407 (467)
T ss_dssp HH--TTCCBCSSC-C--SSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC--T-----TTCSBCC
T ss_pred Hh--CCCCcccCC-C--ceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccc--c-----ccccccc
Confidence 87 466655432 1 2334444 22 12345566655 5898887 54321100 0 0011111
Q ss_pred CCCCeEEEecCCC-CCHHHHHHHHHHHHHHHHHHHh
Q 040741 401 MAHTSIRFGIGRF-TTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 401 ~~~~~iRi~~~~~-~t~edid~~~~~l~~~~~~~~~ 435 (457)
...+.|||+++.. +|++|+++++++|++++++++.
T Consensus 408 ~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~~ 443 (467)
T 1ax4_A 408 ADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFAT 443 (467)
T ss_dssp CSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTT
T ss_pred cccceEEEecccccCCHHHHHHHHHHHHHHHHhhhc
Confidence 2347999999954 8999999999999999987654
No 180
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.94 E-value=3e-26 Score=231.16 Aligned_cols=324 Identities=15% Similarity=0.031 Sum_probs=218.5
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhh-ccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CCC-----CCcEEE--eCCh
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLS-RYGNPHSRTHLFGWESEVAVETARSQIADLI-GAS-----PKEIIF--TSGA 127 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~~-----~~~i~~--t~g~ 127 (457)
.-+|+|+.+++++.+++.+++.+...+ ..++.. ..+. ....++++.+++++ |.+ ++++++ |+||
T Consensus 56 ~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~-Y~~~------~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~gg 128 (448)
T 3meb_A 56 VGAYRDESGKPWILPAVKEAEAIISSDLSKYNKE-YPPV------AGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSG 128 (448)
T ss_dssp SCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCS-CCCT------TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred cccccCCCCCEechHHHHHHHHHHhhcccCCCCC-CCCC------cchHHHHHHHHHHhcCCCccccCcCcEEEEECCcH
Confidence 335778888888999999998776521 111111 1111 23567888888887 876 678999 9999
Q ss_pred HHHHHHH--HHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEEeC-CC--CCCCCHHHHHHhcC---CCce
Q 040741 128 TESNNVS--IKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLPV-GA--DGIVNLDELRAAIR---PDTG 198 (457)
Q Consensus 128 T~a~~~a--l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v~~-~~--~~~~d~~~le~~i~---~~t~ 198 (457)
|+|++++ +.++. .+|++|+++.++|.++...++ .++..|++++.++. +. ++.+|+++++++++ ++++
T Consensus 129 t~al~l~~~~~~~~----~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~ 204 (448)
T 3meb_A 129 TGSLHIGFEFLHLW----MPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSI 204 (448)
T ss_dssp HHHHHHHHHHHHHH----CTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHHHHHHHh----CCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcE
Confidence 9999884 44455 789999999999999988776 11134999999998 55 37899999999997 4688
Q ss_pred EEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC-cc-----cC----CCCcccEEEeccccccCCCC-
Q 040741 199 LISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI-PV-----DV----EKWNVSLMSLSGHKIYGPKG- 264 (457)
Q Consensus 199 li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~-~~-----~~----~~~~~Di~~~s~~K~~g~~G- 264 (457)
++++++++||||.+.+ +++|+++|++||+++++|++|..... .. .+ ......+++.|+||.||+.|
T Consensus 205 ~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 284 (448)
T 3meb_A 205 FLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGE 284 (448)
T ss_dssp EEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGG
T ss_pred EEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccc
Confidence 9999999999999988 55699999999999999999863322 11 01 11123477899999988766
Q ss_pred -ceEE--EE--------ec-----CCCccccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHH
Q 040741 265 -VGAL--YM--------RR-----RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRI 322 (457)
Q Consensus 265 -~G~l--~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~ 322 (457)
+|++ +. .+ +....+..... .....++.....++..++... .+.+++..+++
T Consensus 285 RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~ 357 (448)
T 3meb_A 285 RIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIR-------KTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARI 357 (448)
T ss_dssp CCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHH-------TTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred cceeeeeeeccccccccCCHHHHHHHHHHHHHHHh-------cccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 8887 55 32 22222221111 112244445555554454322 13467888899
Q ss_pred HHHHHHHHHHHhhcC--CC------eEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHH
Q 040741 323 TALHDRLLNGIKEKL--DG------VVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVL 392 (457)
Q Consensus 323 ~~~~~~l~~~l~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l 392 (457)
+++++++.+.|.+ + ++ +.+..+. .+ .+.+.+.+.+.+...+ +||.+.+|.
T Consensus 358 ~~~r~~l~~~L~~-~~~~~~~~~~~~~~~~~~----~g--~~~~~~~~~~~~~~ll~~~gV~v~~G~------------- 417 (448)
T 3meb_A 358 HRMRSLLHASLAK-RKTPGPGSKGTWDHILTA----IG--MFTFTGLTPEHVDYLKEKWSIYLVKAG------------- 417 (448)
T ss_dssp HHHHHHHHHHHHH-TTCCCSTTTCCCTHHHHC----CS--SEEECCCCHHHHHHHHHHHCEEECSGG-------------
T ss_pred HHHHHHHHHHHHh-hCCCCcCcccccceeCCC----ce--EEEecCCCHHHHHHHHHhCCEEEeCCC-------------
Confidence 9999999999988 5 33 2222111 12 1233334433333332 588887653
Q ss_pred HHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 393 RALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 393 ~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
.||+++.. +.++|++++++|++++++
T Consensus 418 -------------gRis~a~~-~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 418 -------------GRMSMCGL-TESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp -------------GEEEGGGC-CTTTHHHHHHHHHHHHHH
T ss_pred -------------cEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 28998754 457799999999999874
No 181
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.94 E-value=9.3e-25 Score=218.42 Aligned_cols=326 Identities=15% Similarity=0.169 Sum_probs=220.6
Q ss_pred CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+..|+|+.+. +..+|++.+++.+.+... .+... . + ..+...++++++++++|. ++++|++|||+
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~-~~~~~---~--~-~~~~~~~l~~~la~~~g~--~~v~~~~ggte 125 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL-WHTSN---V--F-TNEPALRLGRKLIDATFA--ERVLFMNSGTE 125 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTC-CCCCT---T--S-CCHHHHHHHHHHHHHSSC--SEEEEESSHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhc-ccccC---c--c-CCHHHHHHHHHHHhhCCC--CeEEEeCCHHH
Confidence 45578888654 245899999999998653 22111 1 1 235778899999999984 56999999999
Q ss_pred HHHHHHHHhhhhhc---CCC-CEEEEcCCCCcc-hHHHHHHHH----hcCc-----EEEEEeCCCCCCCCHHHHHHhcCC
Q 040741 130 SNNVSIKGVMHFYK---DKK-RHVITTQTEHKC-VLDSCRHLQ----QEGF-----EITYLPVGADGIVNLDELRAAIRP 195 (457)
Q Consensus 130 a~~~al~~~~~~~~---~~g-~~vi~~~~~h~~-~~~~~~~~~----~~G~-----~v~~v~~~~~~~~d~~~le~~i~~ 195 (457)
|++++++.+..+.. .++ ++||+..+.|.+ ...+..... ..++ .+..++.+ |+++|++++++
T Consensus 126 A~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~ 200 (420)
T 2pb2_A 126 ANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDD 200 (420)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCT
T ss_pred HHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhcc
Confidence 99999998873211 155 478877665544 444443321 0111 25556543 89999999999
Q ss_pred CceEEEEeccccccccc----cChHHHHHHHHhcCCcEEEehhhh-cCCC--cc--cCCCCcccEEEeccccccCC-CCc
Q 040741 196 DTGLISVMAVNNEIGVI----QPMEEIGQICKEFKIPFHTDAAQA-LGKI--PV--DVEKWNVSLMSLSGHKIYGP-KGV 265 (457)
Q Consensus 196 ~t~li~i~~~~~~~G~~----~~l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~~~~~~~Di~~~s~~K~~g~-~G~ 265 (457)
++++|++++++|++|.+ .++++|.++|++||+++|+|++|+ ++.. .+ +.....+|++ |++|.+|+ .++
T Consensus 201 ~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~~G~~i 278 (420)
T 2pb2_A 201 HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPV 278 (420)
T ss_dssp TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCC
T ss_pred CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--EecccccCCCce
Confidence 99999999999888863 348999999999999999999996 3211 11 1112346877 45696653 248
Q ss_pred eEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCCeEE
Q 040741 266 GALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDGVVV 342 (457)
Q Consensus 266 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~ 342 (457)
|+++++++..+.+.+...+. ..+.++..++++.++++.+.+ +...++.+++.+++.+.|++. ++.+..
T Consensus 279 G~~~~~~~l~~~l~~~~~~~-------t~~~~~~~~aa~~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 349 (420)
T 2pb2_A 279 SAMLTTQEIASAFHVGSHGS-------TYGGNPLACAVAGAAFDIINT--PEVLQGIHTKRQQFVQHLQAIDEQFDIFSD 349 (420)
T ss_dssp EEEEECHHHHTTCC----CC-------EECCCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred EEEEEhHHHHHhhcCCCcCc-------ccCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 99999887555554321111 114566677777777776654 567778888888888888761 243322
Q ss_pred eCCCCCcccceEEEEEccc---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHH
Q 040741 343 NGSMERRYIGNLNLSFAYV---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA 417 (457)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~e 417 (457)
.. ..+.++.+.+... +..++...| +||.+.++. .+.+||+++..++++
T Consensus 350 ~~----~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~-----------------------~~~iRl~~~~~~t~e 402 (420)
T 2pb2_A 350 IR----GMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAG-----------------------ADVMRFAPSLVVEEA 402 (420)
T ss_dssp EE----EETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESS-----------------------TTEEEECCCTTCCHH
T ss_pred EE----ecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCC-----------------------CCEEEEECCCCCCHH
Confidence 21 1245556666532 345566655 688877642 279999999889999
Q ss_pred HHHHHHHHHHHHHHHH
Q 040741 418 EVDRAIELTVKQVEKL 433 (457)
Q Consensus 418 did~~~~~l~~~~~~~ 433 (457)
|+++++++|+++++++
T Consensus 403 ei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 403 DIHEGMQRFAQAVGKV 418 (420)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998765
No 182
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.94 E-value=1.7e-25 Score=223.77 Aligned_cols=338 Identities=18% Similarity=0.179 Sum_probs=217.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh
Q 040741 63 MQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVET-ARSQIADLIGASPKEIIFTSGATESNNVSIKGVM 139 (457)
Q Consensus 63 ~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~ 139 (457)
+.+.+++++++.+++.+.+...+ ++|..+ +..+....+...+ +++.+++++|.++. .++++|||+|+..+++++.
T Consensus 38 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~v~~~~Gs~a~~~al~~~~ 115 (425)
T 3ecd_A 38 IASENIVSRAVLDAQGSVLTNKYAEGYPGKR-YYGGCEFADEVEALAIERVKRLFNAGHA-NVQPHSGAQANGAVMLALA 115 (425)
T ss_dssp CTTCCCCCHHHHHHHTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTCSEE-ECCCSSHHHHHHHHHHHHC
T ss_pred ecccCCCCHHHHHHHhhhhhcccccCCCcch-hcCCChHHHHHHHHHHHHHHHHhCCCCc-eeecCchHHHHHHHHHHcc
Confidence 44556779999999999886544 333321 1112111123333 55889999998752 3568999999999999887
Q ss_pred hhhcCCCCEEEEcCCCCcchH-HHHHH-HHhcCcEEEEEeCC-CCCCCCHHHHHHhcC-CCceEEEEeccccccccccCh
Q 040741 140 HFYKDKKRHVITTQTEHKCVL-DSCRH-LQQEGFEITYLPVG-ADGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQPM 215 (457)
Q Consensus 140 ~~~~~~g~~vi~~~~~h~~~~-~~~~~-~~~~G~~v~~v~~~-~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~~l 215 (457)
++|++|++..++|.+.. ..... ....+..++.++.+ .++.+|+++++++++ +++++|++++++| |...++
T Consensus 116 ----~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~l 189 (425)
T 3ecd_A 116 ----KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY--PRKLDF 189 (425)
T ss_dssp ----CTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC--CSCCCH
T ss_pred ----CCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC--CCcCCH
Confidence 89999999999998832 22221 11223466667666 447899999999997 5889999987776 678899
Q ss_pred HHHHHHHHhcCCcEEEehhhhcCCCc----ccCCCCcccEEEecccccc-CCCCceEEEEecC-CCccccccccCCcccc
Q 040741 216 EEIGQICKEFKIPFHTDAAQALGKIP----VDVEKWNVSLMSLSGHKIY-GPKGVGALYMRRR-PRIRVEPLINGGGQER 289 (457)
Q Consensus 216 ~~i~~l~~~~~v~li~D~a~~~g~~~----~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~~-~~~~~~~~~~~~~~~~ 289 (457)
++|.++|++||+++|+|++|+.|... ..... .+|++++|+||.+ |+. +|+++.+++ ..+.+......+
T Consensus 190 ~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~~~~~~~~---- 263 (425)
T 3ecd_A 190 ARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKINSAVFPG---- 263 (425)
T ss_dssp HHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCCCS-CEEEEESCHHHHHHHHHHHC------
T ss_pred HHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcccCCCC-cEEEEeCCHHHHHHHHhhhCcc----
Confidence 99999999999999999998654331 11111 3789999999955 565 599998753 333333322221
Q ss_pred ccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc--cccchHH
Q 040741 290 GIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA--YVEGESL 366 (457)
Q Consensus 290 ~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 366 (457)
..++++...+.++..++.... ++++...++.+++.+++.+.|.+ .++.+..+.. ...++.+.+. ..+...+
T Consensus 264 --~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 337 (425)
T 3ecd_A 264 --LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKA--GGVDLVTGGT--DNHLLLVDLRPKGLKGAQV 337 (425)
T ss_dssp -----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSC--SSSEEEEECGGGTCCHHHH
T ss_pred --ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--CCCeeccCCC--CceEEEEEeCCCCCCHHHH
Confidence 123566666666666665543 46788899999999999999998 5777765321 1344445554 2344555
Q ss_pred Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecC----CCCCHHHHHHHHHHHHHHHHHH
Q 040741 367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIG----RFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~----~~~t~edid~~~~~l~~~~~~~ 433 (457)
...| +||.+..+..... . ......+.+||+++ ..++++++++++++|++++++.
T Consensus 338 ~~~l~~~gi~v~~~~~p~~--~-----------~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 338 EQALERAGITCNKNGIPFD--P-----------EKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHHTTEECEECCCTTC--S-----------SCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEecccccCCC--C-----------CCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 5555 5898885432110 0 01122368999944 4445999999999999999876
No 183
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.94 E-value=2e-25 Score=225.21 Aligned_cols=341 Identities=14% Similarity=0.097 Sum_probs=223.7
Q ss_pred CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+..|+|+.++ +..++++.+++.+.+.... .+. .. + ...+...++++.++++++.++++++|++|||+
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~~-~~--~-~~~~~~~~l~~~la~~~~~~~~~v~~~~ggse 121 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--YSP-GF--Q-YGHPLSFQLAEKITDLTPGNLNHVFFTDSGSE 121 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--CCC-SS--S-CCCHHHHHHHHHHHTTSSTTEEEEEEESSHHH
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--Ccc-cc--c-cCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHH
Confidence 44568887522 2348999999999986532 111 00 1 11246778999999999877778999999999
Q ss_pred HHHHHHHHhhhhhc----CCCCEEEEcCCCCcc-hHHHHHHHH----hcC-----cEEEEEeCCCCC-----CCC-----
Q 040741 130 SNNVSIKGVMHFYK----DKKRHVITTQTEHKC-VLDSCRHLQ----QEG-----FEITYLPVGADG-----IVN----- 185 (457)
Q Consensus 130 a~~~al~~~~~~~~----~~g~~vi~~~~~h~~-~~~~~~~~~----~~G-----~~v~~v~~~~~~-----~~d----- 185 (457)
|++++++++..+.. .++++||+..+.|.+ ...++.... ..+ ..+..++.+... .+|
T Consensus 122 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~ 201 (449)
T 3a8u_X 122 CALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGG 201 (449)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHH
Confidence 99999998774321 157888886665554 444444321 011 134555544211 146
Q ss_pred ---HHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhh-hcCCCc--ccCC--CCcc
Q 040741 186 ---LDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQ-ALGKIP--VDVE--KWNV 249 (457)
Q Consensus 186 ---~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~-~~g~~~--~~~~--~~~~ 249 (457)
+++|+++++ +++++|+++++++++|.+.| +++|.++|++||+++|+|++| ++|... ..+. ...+
T Consensus 202 ~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~ 281 (449)
T 3a8u_X 202 IALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTP 281 (449)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCC
Confidence 999999987 56788888888888999888 999999999999999999999 465321 1111 2246
Q ss_pred cEEEeccccccCC--CCceEEEEecCCCccccccccC---CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040741 250 SLMSLSGHKIYGP--KGVGALYMRRRPRIRVEPLING---GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITA 324 (457)
Q Consensus 250 Di~~~s~~K~~g~--~G~G~l~~~~~~~~~~~~~~~~---~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~ 324 (457)
|++ |++|.+++ -.+|+++++++..+.+...... .....+ ...+.++..++++.++++.+.+ +...++.++
T Consensus 282 di~--s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~-~t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~ 356 (449)
T 3a8u_X 282 DLM--CIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHG-YTYSAHPVACAAGLAALCLLQK--ENLVQSVAE 356 (449)
T ss_dssp SEE--EECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCC-CTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHH
T ss_pred CEE--EEcccccCCCCceEEEEECHHHHHHhhccCccccccccccc-CCCcccHHHHHHHHHHHHHHHh--cCHHHHHHH
Confidence 876 55696664 1289999987655544332100 000001 1224566677777778887665 356778888
Q ss_pred HHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc-c-----hHHHhcc--cCeEecccCccCCCCCChhHHHHHcC
Q 040741 325 LHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE-G-----ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALG 396 (457)
Q Consensus 325 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g 396 (457)
+.+++++.|.+ ++.+.++.. ....+.++.+.+.... . .++...| +||.+.++.
T Consensus 357 ~~~~l~~~L~~-l~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g----------------- 417 (449)
T 3a8u_X 357 VAPHFEKALHG-IKGAKNVID-IRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG----------------- 417 (449)
T ss_dssp HHHHHHHHHHT-TTTSTTEEE-EEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET-----------------
T ss_pred HHHHHHHHHHH-HhcCCCeEE-EeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC-----------------
Confidence 88999988877 432211110 0112455566665321 1 1455555 588876541
Q ss_pred CCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 397 VDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 397 ~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
+.+||+++..++++|+++++++|+++++++
T Consensus 418 -------~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 418 -------DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp -------TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -------CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 689999998999999999999999998753
No 184
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.94 E-value=1.2e-25 Score=227.35 Aligned_cols=337 Identities=14% Similarity=0.104 Sum_probs=220.2
Q ss_pred CCcEEecCCCCC---CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741 56 GRPLYLDMQATT---PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN 132 (457)
Q Consensus 56 ~~~i~l~~~~~~---~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~ 132 (457)
.+..|||+.++. ++++++.+++... . ..++ ..+...++++.++++++.+ ++++|+|||+|++
T Consensus 40 ~~~~ylD~~~~~~~~~~~~~~~~a~~~~------~-----~~y~--~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~ 104 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAMSDKQWAGMMMG------D-----EAYA--GSENFYHLERTVQELFGFK--HIVPTHQGRGAEN 104 (456)
T ss_dssp GGGCSEECSCSSSCCCCCHHHHHHHTTC------C-----CCSS--SCHHHHHHHHHHHHHHCCS--EEEEESSHHHHHH
T ss_pred cccceeeeccccCCccCCHHHHHHhhcc------h-----hhcc--cChhHHHHHHHHHHHhCCC--cEEEeCCcHHHHH
Confidence 344578876543 6778888887621 1 0111 1256788999999999975 5999999999999
Q ss_pred HHHHHhhhhhcCCCCEEEEcCCCC-cchHHHHHHHHhcCcEEEEEeCCC----------CCCCCHHHHHHhcCCCc----
Q 040741 133 VSIKGVMHFYKDKKRHVITTQTEH-KCVLDSCRHLQQEGFEITYLPVGA----------DGIVNLDELRAAIRPDT---- 197 (457)
Q Consensus 133 ~al~~~~~~~~~~g~~vi~~~~~h-~~~~~~~~~~~~~G~~v~~v~~~~----------~~~~d~~~le~~i~~~t---- 197 (457)
++++++. ++|| +++.++| .++..++... |++++.++++. ++.+|+++|++++++++
T Consensus 105 ~al~~l~----~~gd--i~~~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~ 175 (456)
T 2ez2_A 105 LLSQLAI----KPGQ--YVAGNMYFTTTRYHQEKN---GAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENI 175 (456)
T ss_dssp HHHHHHC----CTTC--EEEESSCCHHHHHHHHHT---TCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGE
T ss_pred HHHHHhC----CCCC--EeccccccchhHHHHHHc---CCEEEEecccccccccccccccCCCCHHHHHHHHHhccccce
Confidence 9999986 7888 6666777 7766666554 99999998763 25789999999998765
Q ss_pred eEEEEecccc-ccccccC---hHHHHHHHHhcCCcEEEehhhhcC---------CCcccCC--------CCcccEEEecc
Q 040741 198 GLISVMAVNN-EIGVIQP---MEEIGQICKEFKIPFHTDAAQALG---------KIPVDVE--------KWNVSLMSLSG 256 (457)
Q Consensus 198 ~li~i~~~~~-~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g---------~~~~~~~--------~~~~Di~~~s~ 256 (457)
++|++++++| ++|.+.+ +++|.++|++||+++|+|++|+.| ....+.. ....|++++|+
T Consensus 176 ~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~ 255 (456)
T 2ez2_A 176 AYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSG 255 (456)
T ss_dssp EEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEET
T ss_pred eEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeC
Confidence 8999998988 9999887 999999999999999999999874 1111111 01358888888
Q ss_pred ccccCCCCceEEEE-ecCCCccccccccC-CccccccccCCCChhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHH
Q 040741 257 HKIYGPKGVGALYM-RRRPRIRVEPLING-GGQERGIRSGTLPTPLIVGFGSACEIAKKEM-DYDHKRITALHDRLLNGI 333 (457)
Q Consensus 257 ~K~~g~~G~G~l~~-~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~al~~al~~~~~~~-~~~~~~~~~~~~~l~~~l 333 (457)
+|+++++.+|+++. +++..+++...... .+. ...+..+...+.++ ++... +.+ +...++.+++.+++.+.|
T Consensus 256 kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~--a~~~~-~~~~~~~~~~~~~~~~~l~~~L 329 (456)
T 2ez2_A 256 KKDCLVNIGGFLCMNDDEMFSSAKELVVVYEGM---PSYGGLAGRDMEAM--AIGLR-EAMQYEYIEHRVKQVRYLGDKL 329 (456)
T ss_dssp TTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCC---TTTTTCCHHHHHHH--HHHHH-HHTCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCceeEEEECCHHHHHHHHHHHhhccCc---ccccCcchhHHHHH--HHHHH-HHhHHHHHHHHHHHHHHHHHHH
Confidence 88766433688888 44444444332211 110 01112233333321 12111 233 466677778888999999
Q ss_pred hhcCCCeEEeCCCCCcccceEEEEEc----cccchHH-----Hhcc---cCeEecc-cCccCCCCCChhHHHHHcCCCcc
Q 040741 334 KEKLDGVVVNGSMERRYIGNLNLSFA----YVEGESL-----LMGL---KEVAVSS-GSACTSASLEPSYVLRALGVDED 400 (457)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~l---~~i~~~~-g~~~~~~~~~~~~~l~~~g~~~~ 400 (457)
.+ . ++.+..+.. ...+.+.+. +.+..++ ...| +||.+.+ |..|.+. .+. +|....
T Consensus 330 ~~-~-g~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~--~~~-----~g~~~~ 397 (456)
T 2ez2_A 330 KA-A-GVPIVEPVG---GHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGR--NNV-----TGEHHR 397 (456)
T ss_dssp HH-T-TCCBCSSCC---SSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCB--CTT-----TCSBCC
T ss_pred hc-C-CCccccCCC---ceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeeccccccccc--Ccc-----cccccc
Confidence 88 4 665554321 334444442 2333444 4444 4777544 5443220 110 011111
Q ss_pred CCCCeEEEecCCC-CCHHHHHHHHHHHHHHHHHHH
Q 040741 401 MAHTSIRFGIGRF-TTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 401 ~~~~~iRi~~~~~-~t~edid~~~~~l~~~~~~~~ 434 (457)
...+.|||+++.. ++++|+++++++|++++++.+
T Consensus 398 ~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 398 PKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 2237899999986 799999999999999988654
No 185
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.94 E-value=7.6e-27 Score=231.43 Aligned_cols=313 Identities=12% Similarity=0.040 Sum_probs=213.9
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CC--CCCcEEE--eCChHHHHHHHHHHhhh
Q 040741 66 TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-GA--SPKEIIF--TSGATESNNVSIKGVMH 140 (457)
Q Consensus 66 ~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~--~~~~i~~--t~g~T~a~~~al~~~~~ 140 (457)
..++++++.+++.+.+... . .+.|+. .....++++.+++++ +. +++++++ |+|||+|++++++.+..
T Consensus 42 ~~~~~~~v~~a~~~~~~~~--~----~~~y~~--~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~ 113 (394)
T 2ay1_A 42 HTPIMRAVHAAEQRMLETE--T----TKTYAG--LSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARM 113 (394)
T ss_dssp CCCCCHHHHHHHHHHHHHC--C----CCCCCC--SSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CccCcHHHHHHHHHhcCCc--c----cCCCCC--CCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHh
Confidence 3467899999999887541 1 111111 123567888888887 55 6778999 99999999999988762
Q ss_pred hhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCC---CceEEEEeccccccccccC-
Q 040741 141 FYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRP---DTGLISVMAVNNEIGVIQP- 214 (457)
Q Consensus 141 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~---~t~li~i~~~~~~~G~~~~- 214 (457)
+ .+|++|++..+.|.++...++.. |.+++.++.+ .++.+|++++++++++ +++++++++++||+|.+.|
T Consensus 114 ~--~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~ 188 (394)
T 2ay1_A 114 A--NPDLRVFVSDPTWPNHVSIMNFM---GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTL 188 (394)
T ss_dssp H--CTTCCEEEEESCCHHHHHHHHHH---TCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCH
T ss_pred c--CCCCEEEEcCCCChhHHHHHHHc---CCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCH
Confidence 2 48999999999999988877766 9999999985 5677899999999865 3678888999999999987
Q ss_pred --hHHHHHHHHhcCCcEEEehhhhcCCCc-------cc-CCCCc-ccEEEeccccccCCCC--ceEEEE---ecCCCccc
Q 040741 215 --MEEIGQICKEFKIPFHTDAAQALGKIP-------VD-VEKWN-VSLMSLSGHKIYGPKG--VGALYM---RRRPRIRV 278 (457)
Q Consensus 215 --l~~i~~l~~~~~v~li~D~a~~~g~~~-------~~-~~~~~-~Di~~~s~~K~~g~~G--~G~l~~---~~~~~~~~ 278 (457)
+++|.++|++||+++|+|++|+..... +. +...+ .++++.|++|.+|++| +|++++ +++..+++
T Consensus 189 ~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l 268 (394)
T 2ay1_A 189 DQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELA 268 (394)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHH
Confidence 567899999999999999999854331 11 11112 3467889999888666 699998 44332222
Q ss_pred cccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCC---CeEEeCCCCCc
Q 040741 279 EPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKLD---GVVVNGSMERR 349 (457)
Q Consensus 279 ~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~ 349 (457)
...... ......++++.....++..+++.. .+.+++..++++++++++.+.|++ +. ++.+..+..
T Consensus 269 ~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~-- 342 (394)
T 2ay1_A 269 QGAMAF---LNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRD-LSGSDRFGFVAEHR-- 342 (394)
T ss_dssp HHHHHH---HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTSSTTTHHHHCC--
T ss_pred HHHHHH---HHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCeeEEcCCc--
Confidence 211110 000112234555556666666543 245778888899999999999887 42 243332111
Q ss_pred ccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741 350 YIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV 427 (457)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~ 427 (457)
+.++ .+. .+.+.+...+ +||.+.+ .+||+++ .++++++++++++|+
T Consensus 343 -g~~~--~~~-~~~~~~~~~l~~~gi~v~~---------------------------~~Ris~~-~~~~~~i~~~~~~l~ 390 (394)
T 2ay1_A 343 -GMFS--RLG-ATPEQVKRIKEEFGIYMVG---------------------------DSRINIA-GLNDNTIPILARAII 390 (394)
T ss_dssp -SSEE--ECC-CCHHHHHHHHHHHCEECCT---------------------------TCEEEGG-GCCTTTHHHHHHHHH
T ss_pred -eEEE--eeC-CCHHHHHHHHHhCCEEecC---------------------------CCeEEee-cCCHhhHHHHHHHHH
Confidence 2222 222 2334444444 5777652 3599988 468999999999998
Q ss_pred HH
Q 040741 428 KQ 429 (457)
Q Consensus 428 ~~ 429 (457)
++
T Consensus 391 ~~ 392 (394)
T 2ay1_A 391 EV 392 (394)
T ss_dssp HH
T ss_pred Hc
Confidence 75
No 186
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.94 E-value=9.8e-25 Score=219.39 Aligned_cols=327 Identities=15% Similarity=0.146 Sum_probs=222.1
Q ss_pred CCCcEEecCCCC---CC---CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741 55 AGRPLYLDMQAT---TP---VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT 128 (457)
Q Consensus 55 ~~~~i~l~~~~~---~~---~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T 128 (457)
..+..|+|+.+. .. .+|++.+++.+.+.... +..+ . + ..+...++++.+++++|. ++++|++||+
T Consensus 73 ~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~-~~~~-~--~---~~~~~~~l~~~la~~~g~--~~v~~~~sGs 143 (439)
T 2oat_A 73 VEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT-LTSR-A--F---YNNVLGEYEEYITKLFNY--HKVLPMNTGV 143 (439)
T ss_dssp TTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCS-CCCT-T--S---EESSHHHHHHHHHHHHTC--SEEEEESSHH
T ss_pred CCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcC-cccC-c--c---CCHHHHHHHHHHHHhcCC--CEEEEeCCHH
Confidence 345578887662 22 78999999999986532 2111 1 1 124677889999999984 5699999999
Q ss_pred HHHHHHHHHhhhhh-c----CCC-CEEEEcCCCC-cchHHHHHHHH----hcC-----cEEEEEeCCCCCCCCHHHHHHh
Q 040741 129 ESNNVSIKGVMHFY-K----DKK-RHVITTQTEH-KCVLDSCRHLQ----QEG-----FEITYLPVGADGIVNLDELRAA 192 (457)
Q Consensus 129 ~a~~~al~~~~~~~-~----~~g-~~vi~~~~~h-~~~~~~~~~~~----~~G-----~~v~~v~~~~~~~~d~~~le~~ 192 (457)
+|++++++.+..+. . .+| ++||+.++.| .....++.... ..| ..+..++.+ |+++++++
T Consensus 144 eA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~ 218 (439)
T 2oat_A 144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERA 218 (439)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHH
Confidence 99999999876421 0 234 7887776655 44454443221 011 356666654 89999999
Q ss_pred c-CCCceEEEEecccccccccc----ChHHHHHHHHhcCCcEEEehhhh-cCCC--cc--cCCCCcccEEEeccccccCC
Q 040741 193 I-RPDTGLISVMAVNNEIGVIQ----PMEEIGQICKEFKIPFHTDAAQA-LGKI--PV--DVEKWNVSLMSLSGHKIYGP 262 (457)
Q Consensus 193 i-~~~t~li~i~~~~~~~G~~~----~l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~~~~~~~Di~~~s~~K~~g~ 262 (457)
+ ++++++|+++++++++|.+. ++++|.++|++||+++|+|++|. +|.. .+ +.....+|++ |++|.+|+
T Consensus 219 l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~ 296 (439)
T 2oat_A 219 LQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSG 296 (439)
T ss_dssp TTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT
T ss_pred hCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccC
Confidence 9 47788999998888899876 59999999999999999999995 3321 11 2222346877 66696654
Q ss_pred --CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCe
Q 040741 263 --KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGV 340 (457)
Q Consensus 263 --~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 340 (457)
-.+|+++++++..+.+.+...+. . .+.++..++++.++++.+.+ +...++.+++.+++++.|++ + ++
T Consensus 297 G~~~~G~v~~~~~~~~~l~~~~~~~------t-~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~-l-~~ 365 (439)
T 2oat_A 297 GLYPVSAVLCDDDIMLTIKPGEHGS------T-YGGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMK-L-PS 365 (439)
T ss_dssp TSSCCEEEEECHHHHTTSCTTSSCC------S-STTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTT-S-CT
T ss_pred CCCCeEEEEECHHHHhccCCCCccc------C-CCcCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHH-h-cC
Confidence 23899999987666554422211 1 14566667777778877765 36778889999999999988 4 22
Q ss_pred EEeCCCCCcccceEEEEEccc---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741 341 VVNGSMERRYIGNLNLSFAYV---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT 415 (457)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t 415 (457)
.+... ....+.++.+.+... +..++...+ +||.+.++ ..+.+||+++..++
T Consensus 366 ~~~~~-~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~-----------------------~~~~iRi~~~~~~t 421 (439)
T 2oat_A 366 DVVTA-VRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT-----------------------HGDIIRFAPPLVIK 421 (439)
T ss_dssp TTEEE-EEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS-----------------------SSSEEEECCCTTCC
T ss_pred CCcEE-EEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC-----------------------CCCEEEEECccCCC
Confidence 11110 011245555666532 345566655 68877642 12799999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040741 416 EAEVDRAIELTVKQVEK 432 (457)
Q Consensus 416 ~edid~~~~~l~~~~~~ 432 (457)
++|+++++++|++++++
T Consensus 422 ~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 422 EDELRESIEIINKTILS 438 (439)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998763
No 187
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.94 E-value=2.4e-25 Score=220.72 Aligned_cols=305 Identities=13% Similarity=0.092 Sum_probs=210.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH--HHhcCc
Q 040741 94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH--LQQEGF 171 (457)
Q Consensus 94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~--~~~~G~ 171 (457)
.|+....+...++++.++++.|.+ .+++++||++|+.+ +..+. ++|++|++..+.|.+....+.. ++..|.
T Consensus 60 ~y~r~~~p~~~~l~~~la~l~g~~--~~~~~~sG~~Ai~~-~~~l~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~ 132 (400)
T 3nmy_A 60 EYSRTHNPTRFAYERCVAALEGGT--RAFAFASGMAATST-VMELL----DAGSHVVAMDDLYGGTFRLFERVRRRTAGL 132 (400)
T ss_dssp CBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHH-HHTTS----CTTCEEEEESSCCHHHHHHHHHTHHHHHCC
T ss_pred ccccCCCHHHHHHHHHHHHHhCCC--CEEEecCHHHHHHH-HHHHc----CCCCEEEEeCCCchHHHHHHHHhhHhhcCe
Confidence 334444578889999999999976 48888888999987 55566 7999999999999977766543 455699
Q ss_pred EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741 172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL 251 (457)
Q Consensus 172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di 251 (457)
++++++.+ |++++++++++++++|++++++||+|.+.|+++|+++|++||+++|+|++++.+... ....+++|+
T Consensus 133 ~~~~v~~~-----d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~-~~~~~g~di 206 (400)
T 3nmy_A 133 DFSFVDLT-----DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQ-RPLSLGADL 206 (400)
T ss_dssp EEEEECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC-CGGGGTCSE
T ss_pred EEEEECCC-----CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccC-ChhhcCCcE
Confidence 99999876 899999999999999999999999999999999999999999999999999854321 112347899
Q ss_pred EEeccccccCCC--Cc-e-EEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741 252 MSLSGHKIYGPK--GV-G-ALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH 326 (457)
Q Consensus 252 ~~~s~~K~~g~~--G~-G-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~ 326 (457)
++.|++|++|.. .+ | ++++++ +..+++....... ....++.....+... .+.+..+.++..+++
T Consensus 207 v~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~-------g~~~~~~~a~~~l~~----l~~l~~r~~~~~~~a 275 (400)
T 3nmy_A 207 VVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSI-------GGVQGPFDSFLALRG----LKTLPLRMRAHCENA 275 (400)
T ss_dssp EEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHH-------CCBCCHHHHHHHHHH----HTTHHHHHHHHHHHH
T ss_pred EEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHh----HhHHHHHHHHHHHHH
Confidence 999999966533 23 5 444433 2333333222111 113333333222222 234567778888999
Q ss_pred HHHHHHHhhcCCCeEEeCCCC--------------CcccceEEEEEccc--cchHHHhcc--cCeEecccCccC----CC
Q 040741 327 DRLLNGIKEKLDGVVVNGSME--------------RRYIGNLNLSFAYV--EGESLLMGL--KEVAVSSGSACT----SA 384 (457)
Q Consensus 327 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~l--~~i~~~~g~~~~----~~ 384 (457)
+++.+.|++ .|.+..+..+. ...+.++.+.+++. ....++..+ .+++++.|..++ +.
T Consensus 276 ~~l~~~L~~-~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~ 354 (400)
T 3nmy_A 276 LALAQWLET-HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPA 354 (400)
T ss_dssp HHHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCCSSSCEEECTT
T ss_pred HHHHHHHHc-CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCCCCcceeeCcc
Confidence 999999998 78875442221 23466777777542 234556655 356666676543 22
Q ss_pred CC----ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741 385 SL----EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE 431 (457)
Q Consensus 385 ~~----~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~ 431 (457)
.. .+.-.....|+.+ +.||++++. |+++.+++.|+++++
T Consensus 355 ~~~~~~~~~~~~~~~gi~~----~liRlsvGl----e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 355 VMTHASIPVARREQLGISD----ALVRLSVGI----EDLGDLRGDLERALV 397 (400)
T ss_dssp TTTTTTSCHHHHHHHTCCT----TEEEEECCS----SCHHHHHHHHHHHHC
T ss_pred ccccccCCHHHHHhcCCCc----CeEEEEeCc----CCHHHHHHHHHHHHh
Confidence 11 2334566677765 899999997 556666666666664
No 188
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.94 E-value=2.8e-25 Score=222.88 Aligned_cols=344 Identities=15% Similarity=0.094 Sum_probs=210.4
Q ss_pred CCcEEecCCCC---C---CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQAT---T---PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~---~---~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+.-|+|+.++ . ..+|++.+++.+.+.... .... . ....+...+++++++++++.++++++|++||++
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~--~---~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~e 100 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLP-FVHG--S---QFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSE 100 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC-CCCT--T---TCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcc-cccc--c---ccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHH
Confidence 34468888764 2 238999999999887532 1110 0 112257778999999999988889999999999
Q ss_pred HHHHHHHHhhhhhc----CCCCEEEEcCCCCcchHHHHHHHHhc-Cc-----------EEEEEeCCCC---CCCCHHHHH
Q 040741 130 SNNVSIKGVMHFYK----DKKRHVITTQTEHKCVLDSCRHLQQE-GF-----------EITYLPVGAD---GIVNLDELR 190 (457)
Q Consensus 130 a~~~al~~~~~~~~----~~g~~vi~~~~~h~~~~~~~~~~~~~-G~-----------~v~~v~~~~~---~~~d~~~le 190 (457)
|++.+++.+...+. .+++.|++..+.|.+....+..+... .. .+..++.+.. +..|+++|+
T Consensus 101 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 180 (430)
T 3i4j_A 101 ATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLR 180 (430)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHH
Confidence 99999998874321 13578888777776665443332110 00 2333443322 234678899
Q ss_pred HhcC----CCceEEEEecccc-ccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cccCC---CCcccEEEec
Q 040741 191 AAIR----PDTGLISVMAVNN-EIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVE---KWNVSLMSLS 255 (457)
Q Consensus 191 ~~i~----~~t~li~i~~~~~-~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~---~~~~Di~~~s 255 (457)
++++ +++++|+++.+++ ++|.+.+ +++|.++|++||+++|+|++|+ ++.. ..... ...+|+++
T Consensus 181 ~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t-- 258 (430)
T 3i4j_A 181 ALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAV-- 258 (430)
T ss_dssp HHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEE--
T ss_pred HHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEE--
Confidence 9886 5678888888888 9998887 9999999999999999999997 4322 11111 22367765
Q ss_pred cccccCC--CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040741 256 GHKIYGP--KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGI 333 (457)
Q Consensus 256 ~~K~~g~--~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l 333 (457)
++|.+|+ -.+|+++++++..+.+....... .. ......++..+++..++++.+.+ +...++.+++.+++++.|
T Consensus 259 ~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~--~~-~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~~~~l 333 (430)
T 3i4j_A 259 LGKGLAAGYAPLAGLLAAPQVYETVMGGSGAF--MH-GFTYAGHPVSVAAGLSVLDIVER--EDLTGAAKERGAQLLAGL 333 (430)
T ss_dssp ECGGGTTTSSCCEEEEECHHHHHHHHHTTCBC--CC-CCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH
T ss_pred EcccccCCccccEEEEECHHHHHHHhccCCcc--cc-cCCCCCCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHH
Confidence 5596653 23799999887665554321000 00 11125566777777778877655 334444444444444444
Q ss_pred ----hhcCCCeEEeCCCCCcccceEEEEEcccc----------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741 334 ----KEKLDGVVVNGSMERRYIGNLNLSFAYVE----------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV 397 (457)
Q Consensus 334 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~ 397 (457)
.+ ++.+..+.. .+.++.+.+.... ..++...+ +||.+.++..+..
T Consensus 334 ~~~~~~-~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~-------------- 394 (430)
T 3i4j_A 334 QALQAR-FPQMMQVRG----TGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEP-------------- 394 (430)
T ss_dssp HHHHHH-CTTEEEEEE----ETTEEEEEEC------------CHHHHHHHHHHTTEECC---------------------
T ss_pred HHHHHh-CCCeEEEEE----EEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccC--------------
Confidence 34 566654422 1344445543211 13455555 6888876532211
Q ss_pred CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
....+++||+++...+++++++++++|+++++++
T Consensus 395 --~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 395 --NGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp ------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1123789999999899999999999999998764
No 189
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.94 E-value=2.1e-26 Score=229.64 Aligned_cols=321 Identities=14% Similarity=0.059 Sum_probs=218.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CC-----CCCcEEE--eCChHHHHHH
Q 040741 62 DMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-GA-----SPKEIIF--TSGATESNNV 133 (457)
Q Consensus 62 ~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~-----~~~~i~~--t~g~T~a~~~ 133 (457)
|..+..++++.+.+++.+..... +. .+.|+ ......++++.+++++ +. +++++++ |+|||+|+++
T Consensus 42 ~~~~~~~~~~~v~~a~~~~~~~~-~~----~~~y~--~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~ 114 (412)
T 1ajs_A 42 TDDCQPWVLPVVRKVEQRIANNS-SL----NHEYL--PILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRI 114 (412)
T ss_dssp CTTSCCCCCHHHHHHHHHHHTCT-TC----CCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHH
T ss_pred CCCCCccccHHHHHHHHHhhhCh-hh----ccCCC--CCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHH
Confidence 33333567799999998886321 11 11111 1134578889999988 53 5678999 9999999999
Q ss_pred HHHHhhhhhcCCC-----CEEEEcCCCCcchHHHHHHHHhcCcE-EEEEeCC--CCCCCCHHHHHHhcCC---CceEEEE
Q 040741 134 SIKGVMHFYKDKK-----RHVITTQTEHKCVLDSCRHLQQEGFE-ITYLPVG--ADGIVNLDELRAAIRP---DTGLISV 202 (457)
Q Consensus 134 al~~~~~~~~~~g-----~~vi~~~~~h~~~~~~~~~~~~~G~~-v~~v~~~--~~~~~d~~~le~~i~~---~t~li~i 202 (457)
+++.+... ++| ++|++..+.|.++...++.. |.+ ++.++.+ .++.+|++++++++++ +++++++
T Consensus 115 ~~~~~~~~--~~g~~~~~d~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~ 189 (412)
T 1ajs_A 115 GAEFLARW--YNGTNNKDTPVYVSSPTWENHNGVFTTA---GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLH 189 (412)
T ss_dssp HHHHHHHH--SSSSSCCCSCEEEEESCCTHHHHHHHHT---TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHHHh--CcCcCCCCCeEEEcCCCcHHHHHHHHHc---CCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEE
Confidence 96533211 678 99999999999988776665 999 9999884 5567899999999864 6788889
Q ss_pred eccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC--------ccc-CC-CCcccEEEeccccccCCCC--ceE
Q 040741 203 MAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI--------PVD-VE-KWNVSLMSLSGHKIYGPKG--VGA 267 (457)
Q Consensus 203 ~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~--------~~~-~~-~~~~Di~~~s~~K~~g~~G--~G~ 267 (457)
++++||+|.+.+ +++|.++|++||+++|+|++|..... ++. +. ..+.++++.|++|.+|+.| +|+
T Consensus 190 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~ 269 (412)
T 1ajs_A 190 ACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGN 269 (412)
T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEE
Confidence 999999999977 56899999999999999999753221 111 11 1123488999999888877 899
Q ss_pred EEE---ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCC
Q 040741 268 LYM---RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKLD 338 (457)
Q Consensus 268 l~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~ 338 (457)
+++ +++..+.+...... ......++++...+.++..+++.. .+.+++..++++++++++.+.|++ ++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~ 345 (412)
T 1ajs_A 270 LTVVAKEPDSILRVLSQMQK---IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEA-LK 345 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred EEEecCCHHHHHHHHHHHHH---HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hC
Confidence 998 55422222111110 001122345666666666777654 235788889999999999999988 54
Q ss_pred ---CeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC
Q 040741 339 ---GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF 413 (457)
Q Consensus 339 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~ 413 (457)
++.+..+. .+++ .+...+...+...+ +||.+.+ .+||+++.
T Consensus 346 ~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~l~~~gv~v~~---------------------------~~Ris~~~- 391 (412)
T 1ajs_A 346 TPGTWNHITDQ----IGMF--SFTGLNPKQVEYLINQKHIYLLP---------------------------SGRINMCG- 391 (412)
T ss_dssp CSSCCHHHHHC----CSSE--EECCCCHHHHHHHHHTTCEECCT---------------------------TSEEEGGG-
T ss_pred CCCCeeEEcCC----CceE--EEeCCCHHHHHHHHHhCCEEecC---------------------------CcEEEeee-
Confidence 34443221 1221 12223333333333 5777652 25999984
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 040741 414 TTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 414 ~t~edid~~~~~l~~~~~~ 432 (457)
.+++++++++++|++++++
T Consensus 392 ~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 392 LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp CCTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4789999999999998865
No 190
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.94 E-value=7.6e-27 Score=232.95 Aligned_cols=319 Identities=17% Similarity=0.082 Sum_probs=219.4
Q ss_pred EEecCCCCCCCCHHHHHHHHH-HHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-C-----CCCCcEEE--eCChHH
Q 040741 59 LYLDMQATTPVDPRVLDAMLP-FYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-G-----ASPKEIIF--TSGATE 129 (457)
Q Consensus 59 i~l~~~~~~~~~~~v~~a~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g-----~~~~~i~~--t~g~T~ 129 (457)
.|+|++++.++++.+.+++.+ .+.. +. .+.|+ ......++++.+++++ + ++++++++ |+|||+
T Consensus 38 ~~~d~~~~~~~~~~v~~a~~~~~~~~--~~----~~~y~--~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~ 109 (412)
T 1yaa_A 38 AYRDDNGKPWVLPSVKAAEKLIHNDS--SY----NHEYL--GITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTG 109 (412)
T ss_dssp CCBCTTSCBCCCHHHHHHHHHHHTCT--TC----CCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred eeeCCCCCCCCcHHHHHHHHhhhcCc--cc----ccCCC--CCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHh
Confidence 456666666788999999999 7642 11 11111 1123567888888887 3 25678999 999999
Q ss_pred HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC-C-CCCCCCHHHHHHhcCCC---ceEEEEec
Q 040741 130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV-G-ADGIVNLDELRAAIRPD---TGLISVMA 204 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~-~-~~~~~d~~~le~~i~~~---t~li~i~~ 204 (457)
|++++++.+..+ .+|++|++..+.|.++...++.. |.+++.++. + .++.+|+++++++++++ +.++++++
T Consensus 110 a~~~~~~~~~~~--~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~ 184 (412)
T 1yaa_A 110 ALHISAKFFSKF--FPDKLVYLSKPTWANHMAIFENQ---GLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSC 184 (412)
T ss_dssp HHHHHHHHHHHH--CTTCCEEEEESCCTTHHHHHHTT---TCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECS
T ss_pred HHHHHHHHHHHh--CCCCEEEEeCCCCccHHHHHHHc---CceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCC
Confidence 999985433211 68999999999999988776654 999999998 4 36779999999998653 56666799
Q ss_pred cccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC--------cc-cCCCCc----ccEEEeccccccCCCC--ce
Q 040741 205 VNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI--------PV-DVEKWN----VSLMSLSGHKIYGPKG--VG 266 (457)
Q Consensus 205 ~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~--------~~-~~~~~~----~Di~~~s~~K~~g~~G--~G 266 (457)
++||+|.+.+ +++|+++|++||+++|+|++|+.... ++ ++...+ .++++.|++|.+|+.| +|
T Consensus 185 p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG 264 (412)
T 1yaa_A 185 AHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVG 264 (412)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcce
Confidence 9999999987 56789999999999999999963211 11 211112 4578899999988877 79
Q ss_pred EEE--E-----ecC----CCccccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHH
Q 040741 267 ALY--M-----RRR----PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRL 329 (457)
Q Consensus 267 ~l~--~-----~~~----~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l 329 (457)
+++ . +++ .+.++..... ....+++.....++..+++.. .+.+++..++++++++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 337 (412)
T 1yaa_A 265 CFHLALTKQAQNKTIKPAVTSQLAKIIR-------SEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHAL 337 (412)
T ss_dssp EEEEECCSCTTHHHHHHHHHHHHHHHHH-------TTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHh-------hccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 5 333 3333322111 112345666666666677654 235788889999999999
Q ss_pred HHHHhhcCC---CeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCC
Q 040741 330 LNGIKEKLD---GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHT 404 (457)
Q Consensus 330 ~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~ 404 (457)
.+.|++ ++ ++.+..+. .+++ .+...+...+...+ +||.+. .
T Consensus 338 ~~~L~~-~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~l~~~gi~v~---------------------------~ 383 (412)
T 1yaa_A 338 RDHLVK-LGTPGNWDHIVNQ----CGMF--SFTGLTPQMVKRLEETHAVYLV---------------------------A 383 (412)
T ss_dssp HHHHHH-HTCSSCCTHHHHC----CSSE--EECCCCHHHHHHHHHHHCEECC---------------------------T
T ss_pred HHHHHh-hCCCCCeeeeccC----ceEE--EeeCCCHHHHHHHHHhCCEEec---------------------------c
Confidence 999988 43 25443321 2221 12233444443333 477664 2
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 405 SIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 405 ~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
.+||+++. .+++++++++++|+++++.
T Consensus 384 ~~Ris~~~-~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 384 SGRASIAG-LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp TSEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred CcEEEEcc-CCHhHHHHHHHHHHHHHHh
Confidence 47999985 4799999999999998764
No 191
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.89 E-value=1.4e-28 Score=243.87 Aligned_cols=328 Identities=14% Similarity=0.122 Sum_probs=229.7
Q ss_pred CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChHH
Q 040741 57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSGATE 129 (457)
Q Consensus 57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g~T~ 129 (457)
+.+.|..+.+. +.++++.+++.+.+... .+.|+. ...++++.+++++ | .+++++++|+|+++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------~~~y~~----~~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~ 100 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQL-------VYGYTY----ASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVP 100 (392)
Confidence 45566555544 56788999988887531 111111 1445666666554 5 55678999999999
Q ss_pred HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CC--CCCCHHHHHHhcC-CCceEEEEecc
Q 040741 130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-AD--GIVNLDELRAAIR-PDTGLISVMAV 205 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~--~~~d~~~le~~i~-~~t~li~i~~~ 205 (457)
|+.++++++. ++|++|++..+.|.++...++.. |.+++.++.+ .+ +.+|+++++++++ +++++|+++++
T Consensus 101 a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~ 173 (392)
T 3b1d_A 101 AISIAIQAFT----KEGEAVLINSPVYPPFARSVRLN---NRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNP 173 (392)
Confidence 9999999987 78999999999999998877665 8899888875 32 3489999999997 67889999999
Q ss_pred ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccC---CC--CcccEEEeccccccCCCC--ceEEEEe
Q 040741 206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDV---EK--WNVSLMSLSGHKIYGPKG--VGALYMR 271 (457)
Q Consensus 206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~---~~--~~~Di~~~s~~K~~g~~G--~G~l~~~ 271 (457)
+||+|.+.| +++|.++|++||+++|+|++|+.... ...+ .. .+.++++.|++|.+|.+| +|+++++
T Consensus 174 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 253 (392)
T 3b1d_A 174 HNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIE 253 (392)
Confidence 999999987 88999999999999999999985322 1111 11 345688999999876444 7999987
Q ss_pred cC-CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcc
Q 040741 272 RR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRY 350 (457)
Q Consensus 272 ~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 350 (457)
++ ..+.+......+ ..++++.....++.++++...+.+++..++++++++++.+.|++.+|++.+..+.
T Consensus 254 ~~~~~~~~~~~~~~~------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---- 323 (392)
T 3b1d_A 254 NPTLCAQFKHQQLVN------NHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQ---- 323 (392)
Confidence 54 666555433221 1124455555555556654334577888888899999998887634677665432
Q ss_pred cceE-EEEEcc--ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741 351 IGNL-NLSFAY--VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE 424 (457)
Q Consensus 351 ~~~~-~~~~~~--~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~ 424 (457)
.+++ .+.++. .+..++...| +||.+.+|..+.. ...+++||+++. ++++++++++
T Consensus 324 ~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRi~~~~--~~e~i~~~l~ 384 (392)
T 3b1d_A 324 GTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGS-----------------EGELHARLNIAA--PKSLVEEICK 384 (392)
Confidence 2222 234432 2445566555 3888887764421 123789999876 5789999999
Q ss_pred HHHHHHH
Q 040741 425 LTVKQVE 431 (457)
Q Consensus 425 ~l~~~~~ 431 (457)
+|+++++
T Consensus 385 ~l~~~l~ 391 (392)
T 3b1d_A 385 RIVCCLP 391 (392)
Confidence 9988765
No 192
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.94 E-value=1.6e-26 Score=229.20 Aligned_cols=319 Identities=15% Similarity=0.063 Sum_probs=215.8
Q ss_pred EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh---C---CCCCcEEE--eCChHHHH
Q 040741 60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI---G---ASPKEIIF--TSGATESN 131 (457)
Q Consensus 60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~---g---~~~~~i~~--t~g~T~a~ 131 (457)
|++..+..++++++.+++.+.+... . .+.|+ ......++++.+++++ + ++++++++ |+|||+|+
T Consensus 36 ~~~~~~~~~~~~~v~~a~~~~~~~~--~----~~~y~--~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~ 107 (396)
T 2q7w_A 36 YKDETGKTPVLTSVKKAEQYLLENE--T----TKNYL--GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGAL 107 (396)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHHC--C----CCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH
T ss_pred ccCCCCCccCcHHHHHHHHhhcCcc--c----ccCCC--CCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhH
Confidence 3333334467799999998887542 1 11111 1134567888888887 2 23678998 99999999
Q ss_pred HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCC---CceEEEEeccc
Q 040741 132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRP---DTGLISVMAVN 206 (457)
Q Consensus 132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~---~t~li~i~~~~ 206 (457)
+++++.+..+ .+|++|++..+.|.++...++.. |.+++.++.+ .++.+|++++++++++ +++++++++++
T Consensus 108 ~~~~~~~~~~--~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~ 182 (396)
T 2q7w_A 108 RVAADFLAKN--TSVKRVWVSNPSWPNHKSVFNSA---GLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCH 182 (396)
T ss_dssp HHHHHHHHHH--SCCCEEEEEESCCTHHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSC
T ss_pred HHHHHHHHHh--CCCCEEEEcCCCchhHHHHHHHc---CCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 9999876522 58999999999999988877665 9999999985 5677899999999975 47888999999
Q ss_pred cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC-------ccc-CCC-CcccEEEeccccccCCCC--ceEEEE--
Q 040741 207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI-------PVD-VEK-WNVSLMSLSGHKIYGPKG--VGALYM-- 270 (457)
Q Consensus 207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~-------~~~-~~~-~~~Di~~~s~~K~~g~~G--~G~l~~-- 270 (457)
||+|.+.+ +++|.++|++||+++|+|++|+.... ++. +.. .+.++++.|++|.+|++| +|++++
T Consensus 183 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~ 262 (396)
T 2q7w_A 183 NPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVA 262 (396)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEc
Confidence 99999987 56799999999999999999875322 111 111 134588999999988777 799997
Q ss_pred -ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCC---Ce
Q 040741 271 -RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKLD---GV 340 (457)
Q Consensus 271 -~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~ 340 (457)
+++..+.+...... ......++++.....++..+++.. .+.+++..++++++++++.+.|++ +. ++
T Consensus 263 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~ 338 (396)
T 2q7w_A 263 ADSETVDRAFSQMKA---AIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQE-KGANRDF 338 (396)
T ss_dssp SSHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH-TTCCSCC
T ss_pred CCHHHHHHHHHHHHH---HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCc
Confidence 33221222111110 000112344666666666666533 245677788889999999999988 53 24
Q ss_pred EEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741 341 VVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE 418 (457)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed 418 (457)
.+..+. .+++ +.+ ..+...+...+ +||.+.+ .+||+++.. ++++
T Consensus 339 ~~~~~~----~~~~-~~~-~~~~~~~~~~l~~~gv~v~~---------------------------~~Ris~~~~-~~e~ 384 (396)
T 2q7w_A 339 SFIIKQ----NGMF-SFS-GLTKEQVLRLREEFGVYAVA---------------------------SGRVNVAGM-TPDN 384 (396)
T ss_dssp THHHHC----CSSE-EEC-CCCHHHHHHHHHHHCEECCT---------------------------TCEEEGGGC-CTTT
T ss_pred ceecCC----CceE-EEe-cCCHHHHHHHHHhcCeeecC---------------------------CceEEEeec-CHHH
Confidence 433221 2222 222 23333344444 4777652 369999854 7899
Q ss_pred HHHHHHHHHHH
Q 040741 419 VDRAIELTVKQ 429 (457)
Q Consensus 419 id~~~~~l~~~ 429 (457)
+++++++|+++
T Consensus 385 i~~~~~~l~~~ 395 (396)
T 2q7w_A 385 MAPLCEAIVAV 395 (396)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 193
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.94 E-value=3.5e-24 Score=215.53 Aligned_cols=336 Identities=13% Similarity=0.069 Sum_probs=220.0
Q ss_pred CCcEEecCCCCCC------CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChH
Q 040741 56 GRPLYLDMQATTP------VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIFTSGAT 128 (457)
Q Consensus 56 ~~~i~l~~~~~~~------~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~t~g~T 128 (457)
.+.-|+|+.++.+ .+|++.+++.+.+....... +.....+...+++++++++++... ++++|++||+
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~------~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggs 114 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGAT------ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGS 114 (439)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSC------SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcc------ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHH
Confidence 4456888887665 68999999999987642111 111223678899999999997655 5899999999
Q ss_pred HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcC--c---------EEEEEeCCCCCCC-----CHHHHHHh
Q 040741 129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEG--F---------EITYLPVGADGIV-----NLDELRAA 192 (457)
Q Consensus 129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G--~---------~v~~v~~~~~~~~-----d~~~le~~ 192 (457)
+|++.+++.+..+. ++++.|+.....|.....+........ + .+..++.+..+.. |+++|+++
T Consensus 115 ea~~~al~~~~~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 193 (439)
T 3dxv_A 115 DANEAAYRAIVKAT-GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEK 193 (439)
T ss_dssp HHHHHHHHHHHHHH-SCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHH
Confidence 99999999864221 344444555556666665543321100 1 1123333322222 68999999
Q ss_pred c----CCCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC----cccCCCCcccEEEeccccc
Q 040741 193 I----RPDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI----PVDVEKWNVSLMSLSGHKI 259 (457)
Q Consensus 193 i----~~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~----~~~~~~~~~Di~~~s~~K~ 259 (457)
+ .+++++|+++++++++|.+.| +++|.++|++||+++|+|++|+ ++.. ..+.....+|++ |++|.
T Consensus 194 l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~ 271 (439)
T 3dxv_A 194 LAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKG 271 (439)
T ss_dssp HHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGG
T ss_pred HHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcch
Confidence 9 567899999999999999998 9999999999999999999996 3211 112222346776 66696
Q ss_pred cCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc--
Q 040741 260 YGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK-- 336 (457)
Q Consensus 260 ~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 336 (457)
+|+ -++|+++++++.++.+.+...+ ... .++..+++..++++.+.+ +...++.+++.+++++.|.+.
T Consensus 272 ~~~G~riG~~~~~~~~~~~~~~~~~~-------~t~-~~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ 341 (439)
T 3dxv_A 272 LGGGLPLSAVIAPAEILDCASAFAMQ-------TLH-GNPISAAAGLAVLETIDR--DDLPAMAERKGRLLRDGLSELAK 341 (439)
T ss_dssp GGTTSCCEEEEEEHHHHTSCSSSSCC-------TTT-TCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcceEEEEECHHHHhhhcCCCcC-------CCc-ccHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHH
Confidence 653 2489999998766666543211 112 456666666677776654 445556666666666655441
Q ss_pred -CCCeEEeCCCCCcccceEEEEEcc---------ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCC
Q 040741 337 -LDGVVVNGSMERRYIGNLNLSFAY---------VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHT 404 (457)
Q Consensus 337 -~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~ 404 (457)
++.+..... .+.++.+.+.. .....+...+ +||.+.++.. ..+
T Consensus 342 ~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~ 396 (439)
T 3dxv_A 342 RHPLIGDIRG----RGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGM---------------------NGN 396 (439)
T ss_dssp HCTTEEEEEE----ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEEST---------------------TSC
T ss_pred hCCCeEEEEE----EEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCC---------------------CCC
Confidence 454443321 14444444421 1123444444 5888876531 127
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741 405 SIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 405 ~iRi~~~~~~t~edid~~~~~l~~~~~~~~~ 435 (457)
++||+++..++++++++++++|+++++++..
T Consensus 397 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 427 (439)
T 3dxv_A 397 VLEFTPPLTITETDIHKALDLLDRAFSELSA 427 (439)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988754
No 194
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.94 E-value=5.4e-26 Score=233.80 Aligned_cols=338 Identities=12% Similarity=0.074 Sum_probs=223.0
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhC--C--C-CCcEEEeCChHHHHH
Q 040741 59 LYLDMQATTPVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIG--A--S-PKEIIFTSGATESNN 132 (457)
Q Consensus 59 i~l~~~~~~~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~--~-~~~i~~t~g~T~a~~ 132 (457)
+.|..+.+...++++++++.+.+... +..|.. ...+..+.+.+.+.+..+ . . ++++++|+|+|+|+.
T Consensus 106 i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~-------g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~ 178 (533)
T 3f6t_A 106 VNYCHTELGLNRDKVVAEWVNGAVANNYPVPDR-------CLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIV 178 (533)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSS-------CCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHH
T ss_pred eeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcc-------cHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHH
Confidence 44555555555678888777766531 111111 112333334444443312 2 2 357999999999999
Q ss_pred HHHHH-----hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC----CCCCCCHHHHHHhcCCCceEEEEe
Q 040741 133 VSIKG-----VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG----ADGIVNLDELRAAIRPDTGLISVM 203 (457)
Q Consensus 133 ~al~~-----~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~----~~~~~d~~~le~~i~~~t~li~i~ 203 (457)
+++.+ +. ++||+|+++.++|.++...++.. |++++.++++ .++.+|+++|++++++++++|+++
T Consensus 179 ~~~~~l~~~~l~----~~gd~Viv~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~ 251 (533)
T 3f6t_A 179 YAFHSLAENHLL----KKGDKIAINEPIFTPYLRIPELK---DYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVV 251 (533)
T ss_dssp HHHHHHHHTTSS----CTTCEEEEESSCCHHHHTSGGGG---GSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEE
T ss_pred HHHHHhhhhhcc----CCcCEEEEcCCCcHHHHHHHHHc---CCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEe
Confidence 99998 45 89999999999999988766554 8999999885 356789999999999999999999
Q ss_pred ccccccccccChH---HHHHHHH-hcCCcEEEehhhhcCCCc---ccCCCCcccEEEeccccccCCCC--ceEEEEecC-
Q 040741 204 AVNNEIGVIQPME---EIGQICK-EFKIPFHTDAAQALGKIP---VDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRR- 273 (457)
Q Consensus 204 ~~~~~~G~~~~l~---~i~~l~~-~~~v~li~D~a~~~g~~~---~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~- 273 (457)
+++||+|.+.|.+ +|+++|+ +||+++|+|++|+..... +.....+.++++.|++|.+|++| +|+++++++
T Consensus 252 ~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~ 331 (533)
T 3f6t_A 252 NPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKN 331 (533)
T ss_dssp SSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSC
T ss_pred CCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECcHH
Confidence 9999999999865 7888888 689999999999743221 11111245699999999988777 899999876
Q ss_pred ----CCcccccc-------------------------ccCCccccccccCCCChhHHHHHH-HHHHHHH---------Hh
Q 040741 274 ----PRIRVEPL-------------------------INGGGQERGIRSGTLPTPLIVGFG-SACEIAK---------KE 314 (457)
Q Consensus 274 ----~~~~~~~~-------------------------~~~~~~~~~~~~~t~~~~~~~al~-~al~~~~---------~~ 314 (457)
.+..+.+. .............+.+.+...++. .++..+. ..
T Consensus 332 ~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~ 411 (533)
T 3f6t_A 332 VFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPY 411 (533)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHH
T ss_pred HHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHH
Confidence 32222110 000001111223345555444421 1222222 34
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-----------------ccchHHHhcc---cCeE
Q 040741 315 MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-----------------VEGESLLMGL---KEVA 374 (457)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l---~~i~ 374 (457)
+++..++++++++++.+.|. + ++.+.. +.. +.++.+.++. .+..+++..+ +||.
T Consensus 412 ~~~~~~~~~~r~~~l~~~L~--~-~~~~~~-~~~--g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~ 485 (533)
T 3f6t_A 412 IDIARKLVSERYDQLHDAMQ--A-PKDETD-TNT--HYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVV 485 (533)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--C-CCCCST-TBC--CSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHhcC--C-CccccC-CCc--eEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEE
Confidence 67788888888999988885 2 233222 111 2333344432 1333444443 5999
Q ss_pred ecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741 375 VSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 375 ~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~ 435 (457)
+.+|..|..+ .++|||+++. .+++++++++++|.++++++.+
T Consensus 486 v~pg~~f~~~------------------~~~iRls~a~-~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 486 LVDGVGFGAK------------------PGELRVSQAN-LPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp SCTTEEECSS------------------TTEEEEESSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCcccCCC------------------CCEEEEEEee-CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999887541 2799999965 5689999999999999988753
No 195
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.93 E-value=2.4e-24 Score=217.18 Aligned_cols=335 Identities=15% Similarity=0.104 Sum_probs=222.0
Q ss_pred CCcEEecCCCCC------CCCHHHH-H-HHHH---HHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC-CCCCcEEE
Q 040741 56 GRPLYLDMQATT------PVDPRVL-D-AMLP---FYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG-ASPKEIIF 123 (457)
Q Consensus 56 ~~~i~l~~~~~~------~~~~~v~-~-a~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~i~~ 123 (457)
.+..|||+.++. ..+|++. + ++.+ .+.... . .+ . .+ ..+...++++.++++++ .++++++|
T Consensus 52 ~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~-~-~~--~--~~-~~~~~~~la~~la~~~~~~~~~~v~~ 124 (449)
T 2cjg_A 52 TGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNK-P-SN--S--DV-YSVAMARFVETFARVLGDPALPHLFF 124 (449)
T ss_dssp TCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCC-C-CT--T--TC-CCHHHHHHHHHHHHHHCCTTCCEEEE
T ss_pred CCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcC-C-CC--c--cc-CCHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 455788874432 3589999 9 9999 554321 1 11 1 11 12467788899999997 45678999
Q ss_pred eCChHHHHHHHHHHhhhhhc---------C-CCCEEEEcCCCCcchHHHH-HHH-----HhcCc-----EEEEEeCCC--
Q 040741 124 TSGATESNNVSIKGVMHFYK---------D-KKRHVITTQTEHKCVLDSC-RHL-----QQEGF-----EITYLPVGA-- 180 (457)
Q Consensus 124 t~g~T~a~~~al~~~~~~~~---------~-~g~~vi~~~~~h~~~~~~~-~~~-----~~~G~-----~v~~v~~~~-- 180 (457)
++|||+|++.+++.+..+.. + ++++||+..+.|.+....+ ... ...|+ .+..++.++
T Consensus 125 ~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 204 (449)
T 2cjg_A 125 VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPG 204 (449)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTT
T ss_pred eCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCch
Confidence 99999999999997654433 1 2789988887665543321 111 11233 566666553
Q ss_pred CC--------CCCHHHHHHhcC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc---
Q 040741 181 DG--------IVNLDELRAAIR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--- 241 (457)
Q Consensus 181 ~~--------~~d~~~le~~i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--- 241 (457)
.. ..|+++|+++++ +++++|++++++|++|.+.+ +++|.++|++||+++|+|++|+ +|...
T Consensus 205 ~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~ 284 (449)
T 2cjg_A 205 LDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW 284 (449)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred hhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcce
Confidence 11 245677898884 68899999999999998777 9999999999999999999998 43221
Q ss_pred -ccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHH
Q 040741 242 -VDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHK 320 (457)
Q Consensus 242 -~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~ 320 (457)
.......+|+++ ++|.+ | +|+++++++..+.+.+...+.... ......++..++++.++++.+.+ +...+
T Consensus 285 ~~~~~~~~~di~t--~sK~l-~--iG~~~~~~~~~~~l~~~~~~~~~~--~~t~~~n~~~~~aa~aal~~~~~--~~~~~ 355 (449)
T 2cjg_A 285 AYQQLDVAPDIVA--FGKKT-Q--VCGVMAGRRVDEVADNVFAVPSRL--NSTWGGNLTDMVRARRILEVIEA--EGLFE 355 (449)
T ss_dssp THHHHTCCCSEEE--ECGGG-S--SEEEEECGGGGGSTTCTTTSTTSS--CCSSSSCHHHHHHHHHHHHHHHH--HTHHH
T ss_pred eecccCCCceEEE--ecCcc-c--EEEEEECHHHhhhhhhcccCCccc--ccCCCCCHHHHHHHHHHHHHHHh--ccHHH
Confidence 111123467775 55966 3 899999887666544321111110 01224567777777788887765 45667
Q ss_pred HHHHHHHHHHHHHhhc---CCC-eEEeCCCCCcccceEEEEEccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHH
Q 040741 321 RITALHDRLLNGIKEK---LDG-VVVNGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLR 393 (457)
Q Consensus 321 ~~~~~~~~l~~~l~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~ 393 (457)
+.+++.+++++.|++. ++. +..... .+.++.+.+... ...++...| +||.+.++.
T Consensus 356 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-------------- 417 (449)
T 2cjg_A 356 RAVQHGKYLRARLDELAADFPAVVLDPRG----RGLMCAFSLPTTADRDELIRQLWQRAVIVLPAG-------------- 417 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTSEEEEE----ETTEEEEECSSHHHHHHHHHHHHHTTEECEEET--------------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceeeEee----ccEEEEEEECChHHHHHHHHHHHHCCeEEecCC--------------
Confidence 7788888888887651 344 432211 245555555431 234555555 688877542
Q ss_pred HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 394 ALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 394 ~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
.+.|||+++..++++|+++++++|+++++++
T Consensus 418 ---------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 418 ---------ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp ---------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2799999999999999999999999998753
No 196
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.93 E-value=2.1e-24 Score=216.70 Aligned_cols=337 Identities=13% Similarity=0.083 Sum_probs=219.1
Q ss_pred CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+..|+|+.++. ..+|++.+++.+.+... .+.. . ++. .+...++++.++++++.++++++|++||++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~---~--~~~-~~~~~~l~~~la~~~~~~~~~v~~~~gg~e 113 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKL-DHLF---S--EML-SRPVVDLATRLANITPPGLDRALLLSTGAE 113 (433)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHC-CCCC---T--TCC-CHHHHHHHHHHHHHSCTTCCEEEEESCHHH
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhC-cccc---c--ccC-CHHHHHHHHHHHHhCCCCcCEEEEeCchHH
Confidence 455688885432 24899999999998653 1211 1 111 246778889999999987888999999999
Q ss_pred HHHHHHHHhhhhhcCCCCEEEEcCCCCcc-hHHHHHHHH--------hcCcEEEEEeCCCC------------CCCCHHH
Q 040741 130 SNNVSIKGVMHFYKDKKRHVITTQTEHKC-VLDSCRHLQ--------QEGFEITYLPVGAD------------GIVNLDE 188 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~-~~~~~~~~~--------~~G~~v~~v~~~~~------------~~~d~~~ 188 (457)
|++.+++.+..+ ..+++|++..+.|.+ ...+..... .....+..++.+.. +.+|+++
T Consensus 114 a~~~a~~~~~~~--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~ 191 (433)
T 1zod_A 114 SNEAAIRMAKLV--TGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY 191 (433)
T ss_dssp HHHHHHHHHHHH--HTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHH
T ss_pred HHHHHHHHHHHh--hCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHH
Confidence 999999876422 235778877765544 443332210 00113445544321 1246999
Q ss_pred HHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCcccEEEec
Q 040741 189 LRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWNVSLMSLS 255 (457)
Q Consensus 189 le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~~Di~~~s 255 (457)
|+++++ +++++|+++.++|++|.+.+ +++|.++|++||+++|+|++|+ ++... . +.....+|++ |
T Consensus 192 le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s 269 (433)
T 1zod_A 192 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--T 269 (433)
T ss_dssp HHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--E
T ss_pred HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--E
Confidence 999986 56788888888888998776 9999999999999999999998 54221 1 1112246765 5
Q ss_pred cccccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040741 256 GHKIYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIK 334 (457)
Q Consensus 256 ~~K~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~ 334 (457)
++|.+|+ .++|+++++++.++.+.+.... .+ ...+.++..++++.++++.+.+ +...++.+++.+++++.|+
T Consensus 270 ~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~----~~-~t~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~l~ 342 (433)
T 1zod_A 270 LSKTLGAGLPLAAIVTSAAIEERAHELGYL----FY-TTHVSDPLPAAVGLRVLDVVQR--DGLVARANVMGDRLRRGLL 342 (433)
T ss_dssp ECHHHHTTSSCEEEEECHHHHHHHHHTTCC----CC-CTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHH
T ss_pred ecccccCCCCeeEEEEhHHHHHhhccCCCC----CC-CCCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH
Confidence 6695543 3489999988665555431100 00 1124466777777778877665 3456677777777777776
Q ss_pred hc---CCCeEEeCCCCCcccceEEEEEccc---------cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741 335 EK---LDGVVVNGSMERRYIGNLNLSFAYV---------EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDED 400 (457)
Q Consensus 335 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~ 400 (457)
+. ++.+..... .+.++.+.+... ....+...+ +||.+.+|..+ +
T Consensus 343 ~l~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--------------~---- 400 (433)
T 1zod_A 343 DLMERFDCIGDVRG----RGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLP--------------G---- 400 (433)
T ss_dssp HHHHHCTTEEEEEE----ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCT--------------T----
T ss_pred HHHHhCCCeEEEEE----EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCC--------------C----
Confidence 51 344432211 144445555321 134455555 68888776421 1
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 401 MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 401 ~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
..+++||+++..++++++++++++|+++++++
T Consensus 401 -~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 401 -MGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp -SCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 12799999999999999999999999988754
No 197
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.93 E-value=9.9e-24 Score=212.75 Aligned_cols=341 Identities=11% Similarity=0.058 Sum_probs=210.8
Q ss_pred CCcEEecCCCC------CCCCHHHHHHHHHHHhhccC-CCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741 56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYG-NPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT 128 (457)
Q Consensus 56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T 128 (457)
.+.-|+|+.+. +..+|++.+++.+.+..... .+.. ...+...+++++++++++.+.++++|++|||
T Consensus 42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~-------~~~~~~~~la~~l~~~~~~~~~~v~~~~sGs 114 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLG-------MTNVPATQLAETLIDISPKKLTRVFYSDSGA 114 (448)
T ss_dssp TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSS-------SEEHHHHHHHHHHHHHSCTTEEEEEEESSHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccc-------cCCHHHHHHHHHHHHhCCCCCCEEEEeCchH
Confidence 44568888763 23589999999999865311 1111 1125677899999999976667899999999
Q ss_pred HHHHHHHHHhhhhhcCC----CCEEEEcCCCCcchHHHHHHHHh-c---------CcEEEEEeCCCCCC-----------
Q 040741 129 ESNNVSIKGVMHFYKDK----KRHVITTQTEHKCVLDSCRHLQQ-E---------GFEITYLPVGADGI----------- 183 (457)
Q Consensus 129 ~a~~~al~~~~~~~~~~----g~~vi~~~~~h~~~~~~~~~~~~-~---------G~~v~~v~~~~~~~----------- 183 (457)
+|++.+++.+..++..+ +++||+..+.|.+.......+.. . ...+..++.+....
T Consensus 115 eA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (448)
T 3dod_A 115 EAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRD 194 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhH
Confidence 99999999987542224 48898888777655443332210 0 11233444443222
Q ss_pred CCHHHHHHhcC---CCceEEEEeccc-cccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--c--ccCCCCccc
Q 040741 184 VNLDELRAAIR---PDTGLISVMAVN-NEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--P--VDVEKWNVS 250 (457)
Q Consensus 184 ~d~~~le~~i~---~~t~li~i~~~~-~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~--~~~~~~~~D 250 (457)
.|+++|+++++ +++++|+++.++ ++.|.+.+ +++|.++|++||++||+|++|+ +|.. . .......+|
T Consensus 195 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~d 274 (448)
T 3dod_A 195 QCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPD 274 (448)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCC
Confidence 24889999986 567889999998 99998877 9999999999999999999987 4321 1 122223467
Q ss_pred EEEeccccccC-C-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741 251 LMSLSGHKIYG-P-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR 328 (457)
Q Consensus 251 i~~~s~~K~~g-~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~ 328 (457)
++++ +|.+| + .++|+++++++..+.+..................++..+++..++++.+.+ +...++.+++.++
T Consensus 275 i~t~--sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~ 350 (448)
T 3dod_A 275 LMAA--GKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFES--ENIVEQVAEKSKK 350 (448)
T ss_dssp EEEE--CGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHH
T ss_pred EEEe--cccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHH
Confidence 7654 59544 3 258999999876666554100000000001124566677777778877655 3444555555555
Q ss_pred HHHHHhh--cCCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCCCCCChhHHH
Q 040741 329 LLNGIKE--KLDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTSASLEPSYVL 392 (457)
Q Consensus 329 l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l 392 (457)
+++.|.+ .++.+.... ..+.++.+.+.... ...+...+ +||.+.++.
T Consensus 351 ~~~~l~~l~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------- 413 (448)
T 3dod_A 351 LHFLLQDLHALPHVGDIR----QLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLG------------- 413 (448)
T ss_dssp HHHHHHHHTTSTTEEEEE----EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEET-------------
T ss_pred HHHHHHHHhcCCCeEEEE----eeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEeccC-------------
Confidence 5555543 144443221 11344445553211 13444444 577776541
Q ss_pred HHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741 393 RALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 393 ~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~ 435 (457)
+.|||+++..++++++++++++|+++++++..
T Consensus 414 -----------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 445 (448)
T 3dod_A 414 -----------DVIAFLPPLASTAEELSEMVAIMKQAIHEVTS 445 (448)
T ss_dssp -----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999987653
No 198
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.93 E-value=1.2e-25 Score=227.97 Aligned_cols=341 Identities=17% Similarity=0.173 Sum_probs=215.0
Q ss_pred CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741 57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK 136 (457)
Q Consensus 57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~ 136 (457)
+..|+|+.+..+. +++.+++.+.+.. +. ..|+. .+...++++++++++|. ++++||+|||+|++++++
T Consensus 40 ~~~ylD~~~~~~~-~~v~~a~~~~l~~--~~-----~~y~~--~~~~~~l~~~la~~~~~--~~v~~t~~gt~A~~~al~ 107 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-GAVTQSMQAAMMR--GD-----EAYSG--SRSYYALAESVKNIFGY--QYTIPTHQGRGAEQIYIP 107 (467)
T ss_dssp GGCSEECSCCSSC-SCCCHHHHHHTTS--CC-----CCSSS--CHHHHHHHHHHHHHHCC--SEEEEEC--CCSHHHHHH
T ss_pred CCeeEecccCCCc-HHHHHHHHHHhcc--Cc-----ceecc--CchhHHHHHHHHHHhCc--CcEEEcCCcHHHHHHHHH
Confidence 4468888776665 7888888887642 11 11111 14567899999999997 459999999999999999
Q ss_pred HhhhhhcCC-----C----CEEEEcCCCCcchHHHHHHHHhcCcEEEEE------eCC----CCCCCCHHHHHHhcC---
Q 040741 137 GVMHFYKDK-----K----RHVITTQTEHKCVLDSCRHLQQEGFEITYL------PVG----ADGIVNLDELRAAIR--- 194 (457)
Q Consensus 137 ~~~~~~~~~-----g----~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v------~~~----~~~~~d~~~le~~i~--- 194 (457)
++. ++ | |+|++. ..|.......- ...|..+... +.+ .++.+|+++|+++|+
T Consensus 108 ~~~----~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~ 180 (467)
T 2oqx_A 108 VLI----KKREQEKGLDRSKMVAFS-NYFFDTTQGHS--QINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG 180 (467)
T ss_dssp HHH----HHHHHHHCCCTTTCEEEE-SSCCHHHHHHH--HHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC
T ss_pred HHh----ccccccCCCCccceEEec-ccccccchhhh--hccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC
Confidence 987 44 6 888776 56655433322 2236655443 122 346789999999997
Q ss_pred -CCceEEEEecccccc-ccccC---hHHHHHHHHhcCCcEEEehhhhc-----------CCCcccCCC------CcccEE
Q 040741 195 -PDTGLISVMAVNNEI-GVIQP---MEEIGQICKEFKIPFHTDAAQAL-----------GKIPVDVEK------WNVSLM 252 (457)
Q Consensus 195 -~~t~li~i~~~~~~~-G~~~~---l~~i~~l~~~~~v~li~D~a~~~-----------g~~~~~~~~------~~~Di~ 252 (457)
+++++|++++++|++ |.+.+ +++|+++|++||+++|+|++|++ +........ ..+|++
T Consensus 181 ~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~ 260 (467)
T 2oqx_A 181 PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADML 260 (467)
T ss_dssp GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEE
T ss_pred CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeE
Confidence 478999999999997 77655 78999999999999999987765 222222111 236888
Q ss_pred EeccccccCCC-CceEEEEecC-CC---ccccccc-cCCccccccccCCCChhHHHHHHHHHHHHHHhhH-HHHHHHHHH
Q 040741 253 SLSGHKIYGPK-GVGALYMRRR-PR---IRVEPLI-NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMD-YDHKRITAL 325 (457)
Q Consensus 253 ~~s~~K~~g~~-G~G~l~~~~~-~~---~~~~~~~-~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~-~~~~~~~~~ 325 (457)
++|+||.+|.+ | |+++++++ .+ .++.+.. .+++. ...+..+...+.++..++ .+.++ ...++..++
T Consensus 261 ~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~al~~~l---~~~~~~~~~~~~~~~ 333 (467)
T 2oqx_A 261 AMSAKKDAMVPMG-GLLCMKDDSFFDVYTECRTLCVVQEGF---PTYGGLEGGAMERLAVGL---YDGMNLDWLAYRIAQ 333 (467)
T ss_dssp EEESSSTTCCSSC-EEEEECSGGGHHHHHHHHHHHHHTTSS---CCCCCCCHHHHHHHHHHH---HHTTCHHHHHHHHHH
T ss_pred EEecccccCCCCc-eEEEecChhHHHHHHHHHHhhhccCCc---ccccchhhhHHHHHHHhh---HhhhhHHHHHHHHHH
Confidence 99999987755 5 77777655 22 2233322 11111 112333433333332222 22222 345666788
Q ss_pred HHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc----cccchH-----HHhcc---cCeEecccCccCCCCCChhHHHH
Q 040741 326 HDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA----YVEGES-----LLMGL---KEVAVSSGSACTSASLEPSYVLR 393 (457)
Q Consensus 326 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~l---~~i~~~~g~~~~~~~~~~~~~l~ 393 (457)
.+++.+.|.+ + ++.+. +. . ..++.+.+. +.+..+ +...| +||.+.++..|..+.. |.
T Consensus 334 ~~~l~~~L~~-~-~~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~-~~---- 402 (467)
T 2oqx_A 334 VQYLVDGLEE-I-GVVCQ-QA-G--GHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRD-PK---- 402 (467)
T ss_dssp HHHHHHHHHH-T-TCCEE-EE-C--SSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC-TT----
T ss_pred HHHHHHHHHH-C-CCeee-cC-C--ceEEEEechhhcccCCcccccHHHHHHHHHHhcCceeccccccccccc-cc----
Confidence 8999999988 5 66655 32 1 344555553 223222 24444 5898887554321100 00
Q ss_pred HcCCCccCCCCeEEEecCCC-CCHHHHHHHHHHHHHHHHHHHh
Q 040741 394 ALGVDEDMAHTSIRFGIGRF-TTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 394 ~~g~~~~~~~~~iRi~~~~~-~t~edid~~~~~l~~~~~~~~~ 435 (457)
.|.......+.|||+++.. ++++||++++++|++++++.++
T Consensus 403 -~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 444 (467)
T 2oqx_A 403 -TGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAAN 444 (467)
T ss_dssp -TCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGGG
T ss_pred -ccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 0111122347999999998 9999999999999999987543
No 199
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.93 E-value=1.7e-23 Score=211.28 Aligned_cols=342 Identities=11% Similarity=0.038 Sum_probs=218.4
Q ss_pred CCcEEecCCCC---C---CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQAT---T---PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~---~---~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+.-|+|+.+. . ..+|++.+++.+.+....-.+. ....+...+++++++++++.+.+ ++||+|||+
T Consensus 47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~-------~~~~~~~~~la~~l~~~~~~~~~-v~~~~ggse 118 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPM-------SQSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSE 118 (452)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCT-------TSEEHHHHHHHHHHHHHHTSCEE-EEEESSHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCccc-------ccCCHHHHHHHHHHHHhCCCCce-EEEeCchHH
Confidence 44568887655 2 3589999999999865311111 11225778899999999997766 999999999
Q ss_pred HHHHHHHHhhhhhc-C---CCCEEEEcCCCCcchHHHHHHHHh----------cCcEEEEEeCCCCC---CCC-------
Q 040741 130 SNNVSIKGVMHFYK-D---KKRHVITTQTEHKCVLDSCRHLQQ----------EGFEITYLPVGADG---IVN------- 185 (457)
Q Consensus 130 a~~~al~~~~~~~~-~---~g~~vi~~~~~h~~~~~~~~~~~~----------~G~~v~~v~~~~~~---~~d------- 185 (457)
|++.+++.+..++. . ++++|++..+.|.+.......+.. ....+..++..... .-|
T Consensus 119 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (452)
T 3n5m_A 119 ANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDV 198 (452)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHH
Confidence 99999998874321 2 578888877776655444333210 01124445432111 112
Q ss_pred --HHHHHHhcC----CCceEEEEecc-ccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--c--ccCCCCcc
Q 040741 186 --LDELRAAIR----PDTGLISVMAV-NNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--P--VDVEKWNV 249 (457)
Q Consensus 186 --~~~le~~i~----~~t~li~i~~~-~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~--~~~~~~~~ 249 (457)
+++|+++++ +++++|+++.+ +| +|.+.| +++|.++|++||+++|+|++|+ +|.. . .+.....+
T Consensus 199 ~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~ 277 (452)
T 3n5m_A 199 ECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKP 277 (452)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCC
Confidence 899999987 66788999998 89 999887 9999999999999999999987 4322 1 12222346
Q ss_pred cEEEeccccccC-C-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741 250 SLMSLSGHKIYG-P-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD 327 (457)
Q Consensus 250 Di~~~s~~K~~g-~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~ 327 (457)
|++++ +|.+| + .++|+++++++..+.+........... ......++..+++..++++.+.+ +...++.+++.+
T Consensus 278 di~t~--sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~ 352 (452)
T 3n5m_A 278 DIITM--AKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRH-INTFGGNPAACALALKNLEIIEN--ENLIERSAQMGS 352 (452)
T ss_dssp SEEEE--CGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCC-CCSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHH
T ss_pred CEEee--cccccCCCcceEEEEECHHHHHHHhhccCCCCccc-cCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHH
Confidence 77754 59443 3 458999999877666533100000000 01124566677777778877654 344555555555
Q ss_pred HHHHHHhhc---CCCeEEeCCCCCcccceEEEEEccc--c--------chHHHhcc--cCeEecccCccCCCCCChhHHH
Q 040741 328 RLLNGIKEK---LDGVVVNGSMERRYIGNLNLSFAYV--E--------GESLLMGL--KEVAVSSGSACTSASLEPSYVL 392 (457)
Q Consensus 328 ~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l 392 (457)
++++.|.+. ++.+..... .+.++.+.+... . ...+...+ +||.+.++..+.+
T Consensus 353 ~l~~~L~~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~--------- 419 (452)
T 3n5m_A 353 LLLEQLKEEIGEHPLVGDIRG----KGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTA--------- 419 (452)
T ss_dssp HHHHHHHHHHTTCTTEEEEEE----SSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSST---------
T ss_pred HHHHHHHHHHhcCCCeEEEEE----EEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccC---------
Confidence 555555431 455443321 133444444211 0 12344444 6898887764432
Q ss_pred HHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 393 RALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 393 ~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
...+.|||+++..+|++++++++++|++++++
T Consensus 420 --------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 420 --------GYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp --------TCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred --------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 11389999999999999999999999998753
No 200
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.93 E-value=1.5e-24 Score=214.76 Aligned_cols=269 Identities=13% Similarity=0.064 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHhh--ccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEE---eCChHHHHHHHHHHhhhhhcCC
Q 040741 71 PRVLDAMLPFYLS--RYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIF---TSGATESNNVSIKGVMHFYKDK 145 (457)
Q Consensus 71 ~~v~~a~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~---t~g~T~a~~~al~~~~~~~~~~ 145 (457)
.+|+++|.+.... .++ + +..|.|+.. ...++++.+++++|.+. .++ ++|||+|+.+++.+++ ++
T Consensus 32 ~~vl~a~~~~~~~~~~~~-~-~~~~~y~~~---~~~~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~all----~~ 100 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFH-P-STGYGYDDE---GRDTLERVYATVFKTEA--ALVRPQIISGTHAISTVLFGIL----RP 100 (409)
T ss_dssp HHHHHHHHHTTCCGGGGC-C-CCTTCTTCH---HHHHHHHHHHHHHTCSE--EEEETTSCSHHHHHHHHHHHHC----CT
T ss_pred HHHHHHHHHhhhhhhccC-C-CcCCCCChh---HHHHHHHHHHHHhCCCc--EEEECCCccHHHHHHHHHHHhc----CC
Confidence 5678888886532 232 2 224444433 47789999999999865 444 8999999999999988 89
Q ss_pred CCEEEEcC-CCCcchHHHH-------HHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEec----ccccccccc
Q 040741 146 KRHVITTQ-TEHKCVLDSC-------RHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMA----VNNEIGVIQ 213 (457)
Q Consensus 146 g~~vi~~~-~~h~~~~~~~-------~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~----~~~~~G~~~ 213 (457)
||+|+++. +.|......+ ..++..|++++.++.+.++.+|+++++++++++|++|++++ ++|++|.+.
T Consensus 101 GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~ 180 (409)
T 3jzl_A 101 DDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIE 180 (409)
T ss_dssp TCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHH
T ss_pred CCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccc
Confidence 99999998 8898887655 34456699999999988899999999999999999999999 999999999
Q ss_pred ChHHHHHHHHh--cCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCC---ceEEEEecCCCccccccccCCccc
Q 040741 214 PMEEIGQICKE--FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQE 288 (457)
Q Consensus 214 ~l~~i~~l~~~--~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~ 288 (457)
|+++|.++|++ +|+++++|++++.+.........++|++++|+||.+|+.| .|++++++++++++.......+..
T Consensus 181 ~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g 260 (409)
T 3jzl_A 181 KIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIG 260 (409)
T ss_dssp HHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTG
T ss_pred cHHHHHHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhcccccc
Confidence 99999999999 9999999999987764334445679999999999765432 499999887777665432211110
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC-cccceEEEEEc
Q 040741 289 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER-RYIGNLNLSFA 359 (457)
Q Consensus 289 ~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (457)
...+.. .....++...+ ..+..++++..+++.++.+.|++ + ++.+...+.. ++..++.+.+.
T Consensus 261 --~~~g~~-~~~~~~~l~gl----~~~~~r~~~~~~~a~~la~~L~~-~-g~~v~p~~~~~~~~~i~~i~l~ 323 (409)
T 3jzl_A 261 --REAGAS-LYSLLEMYQGF----FLAPHVTAQAIKGARFTAAMLAE-F-GVEADPVWDAPRTDLIQSVSFH 323 (409)
T ss_dssp --GGCCCC-TTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-T-TCEEESCTTSCCSSSCCEEECS
T ss_pred --cccccc-HHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCCCCCccEEEEEEeC
Confidence 111111 11112222222 23466778888999999999999 5 4566543322 33335555554
No 201
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.93 E-value=6.5e-25 Score=214.56 Aligned_cols=289 Identities=17% Similarity=0.140 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCC--EEEEcCCCCcchHHHHHHHHhcCcEEEEEeC
Q 040741 101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR--HVITTQTEHKCVLDSCRHLQQEGFEITYLPV 178 (457)
Q Consensus 101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~--~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~ 178 (457)
+...++++++++++|.+. .++++|||+|+.++++++. .+++ .|+++...|.+...........|++++.++.
T Consensus 47 ~~~~~l~~~la~~~~~~~--~i~~~~G~~a~~~al~~~~----~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 120 (357)
T 3lws_A 47 AIIEPFEQKFADVLGMDD--AVFFPSGTMAQQVALRIWS----DETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA 120 (357)
T ss_dssp TTHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHH----HHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC
T ss_pred hHHHHHHHHHHHHhCCCc--EEEecCcHHHHHHHHHHHh----hcCCCcEEEecccceeeeeccchhhhccCcEEEEecC
Confidence 467889999999999854 5777899999999999887 5666 7888888887665532233445899988884
Q ss_pred CCCCCCCHHHHHHhcCCCceEEEEecccccc-ccccC---hHHHHHHHHhcCCcEEEehhhhc------CCCcccCCCCc
Q 040741 179 GADGIVNLDELRAAIRPDTGLISVMAVNNEI-GVIQP---MEEIGQICKEFKIPFHTDAAQAL------GKIPVDVEKWN 248 (457)
Q Consensus 179 ~~~~~~d~~~le~~i~~~t~li~i~~~~~~~-G~~~~---l~~i~~l~~~~~v~li~D~a~~~------g~~~~~~~~~~ 248 (457)
.++.+|+++++++. ++++|++++++||+ |.+.+ +++|.++|++||+++|+|++|.. +....... ..
T Consensus 121 -~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~ 196 (357)
T 3lws_A 121 -ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-GL 196 (357)
T ss_dssp -TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-TT
T ss_pred -CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-hc
Confidence 45679999999884 38999999999998 88886 88899999999999999999862 21111111 24
Q ss_pred ccEEEecccccc-CCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741 249 VSLMSLSGHKIY-GPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD 327 (457)
Q Consensus 249 ~Di~~~s~~K~~-g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~ 327 (457)
.|+++.|+||.+ ||.| |+++.+++.++++.......+. .....+....+ ...+++. .. +..++..++++
T Consensus 197 ~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~l~~---~~-~~~~~~~~~~~ 266 (357)
T 3lws_A 197 FDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWKRRYGG----DLISLYPYIVS-ADYYYEL---RK-DRMGQYYEQAK 266 (357)
T ss_dssp SSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTC----CCSCCHHHHHH-HHHHHHH---HT-TCHHHHHHHHH
T ss_pred CCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHHHHhcC----CcccchHHHHH-HHHHHHH---HH-HHHHHHHHHHH
Confidence 688999999976 7777 9999887665555432211000 00011122222 2233332 22 33345677888
Q ss_pred HHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCC
Q 040741 328 RLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMA 402 (457)
Q Consensus 328 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~ 402 (457)
++.+.|++ ++++.+...+.. .+++.+.++.. +...+...| +||.+.+|....+ +
T Consensus 267 ~l~~~L~~-~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~------------------~ 325 (357)
T 3lws_A 267 QLAEQFNA-LPGVHTTPEVPV--SNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKD------------------G 325 (357)
T ss_dssp HHHHHHHT-STTEEEESSSCS--SSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECS------------------S
T ss_pred HHHHHHHh-CCCCeeccCCCc--ceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCC------------------C
Confidence 99999998 889988432222 44555666542 134555555 6999988753221 2
Q ss_pred CCeEEEecCCC---CCHHHHHHHHHHHHHHH
Q 040741 403 HTSIRFGIGRF---TTEAEVDRAIELTVKQV 430 (457)
Q Consensus 403 ~~~iRi~~~~~---~t~edid~~~~~l~~~~ 430 (457)
..++|++++.. .+++++++++++|.+++
T Consensus 326 ~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 326 YCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred ceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 25899998754 57899999999888764
No 202
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.93 E-value=1.5e-24 Score=230.27 Aligned_cols=303 Identities=14% Similarity=0.046 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741 101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA 180 (457)
Q Consensus 101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~ 180 (457)
..+.++++.+++++|.+. .+++++|+|+|+.+++.+++ ++||+|+++.++|.++..++... |+++++++.+.
T Consensus 205 g~v~~~ee~la~l~G~d~-~i~~~~Gtt~a~~~~i~al~----~~GD~Vlv~~~~h~s~~~~~~~~---G~~~v~v~~~~ 276 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADR-SWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKSIEQGLMLT---GAKPVYMVPSR 276 (755)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHHHH---CCEEEEECCCB
T ss_pred cHHHHHHHHHHHHhCCCc-eEEECCcHHHHHHHHHHHhc----CCCCEEEECCCchHHHHHHHHHc---CCEEEEEeCCC
Confidence 467889999999999863 47778888899999999998 89999999999999999987766 99999998764
Q ss_pred C-----CCC-----CHHHHHHhcCC--Cce--------EEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCC
Q 040741 181 D-----GIV-----NLDELRAAIRP--DTG--------LISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI 240 (457)
Q Consensus 181 ~-----~~~-----d~~~le~~i~~--~t~--------li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~ 240 (457)
+ +.+ |+++|+++|++ +++ +++++++ |++|.+.|+++|+++|++||+++|+|+||+.+..
T Consensus 277 ~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~ 355 (755)
T 2vyc_A 277 NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYAR 355 (755)
T ss_dssp CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGG
T ss_pred CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcc
Confidence 3 345 99999999964 444 8888887 6899999999999999999999999999974311
Q ss_pred --cc--cCCC-Cc--ccE------EEeccccc-cCCCCceEEEEecC--CCc--cccccccCCccccccccCCCChhHHH
Q 040741 241 --PV--DVEK-WN--VSL------MSLSGHKI-YGPKGVGALYMRRR--PRI--RVEPLINGGGQERGIRSGTLPTPLIV 302 (457)
Q Consensus 241 --~~--~~~~-~~--~Di------~~~s~~K~-~g~~G~G~l~~~~~--~~~--~~~~~~~~~~~~~~~~~~t~~~~~~~ 302 (457)
+. +... .+ +|+ ++.|+||. .|+.++|+++++++ ... ++.... ..+.+++++...++
T Consensus 356 ~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~------~~~~s~sp~~~~ia 429 (755)
T 2vyc_A 356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAY------MMHATTSPLYAICA 429 (755)
T ss_dssp GCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHH------HHTSCSSCCHHHHH
T ss_pred cCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHH------HHhCCCCHHHHHHH
Confidence 10 1111 24 565 99999994 55667788988876 222 111111 12345789999999
Q ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCC---------eEEeCCCCCc-----------------------
Q 040741 303 GFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDG---------VVVNGSMERR----------------------- 349 (457)
Q Consensus 303 al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~---------~~~~~~~~~~----------------------- 349 (457)
++.+|++.+... .+.+.++..++++++++.|.+ +++ ++++++....
T Consensus 430 al~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (755)
T 2vyc_A 430 SNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMAR-LYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQD 508 (755)
T ss_dssp HHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGG
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-ccccccccccceeeccCchhccccccccccccccccchhccchhh
Confidence 999998877653 678889999999999999988 777 7777643110
Q ss_pred -----------------------ccceEEEEEcc-----------ccchHHHhcccCeEecccCccCCCCCChhHHHHHc
Q 040741 350 -----------------------YIGNLNLSFAY-----------VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRAL 395 (457)
Q Consensus 350 -----------------------~~~~~~~~~~~-----------~~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~l~~~ 395 (457)
-+..+.+..++ .++..+... |+..
T Consensus 509 ~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~----------------------L~~~ 566 (755)
T 2vyc_A 509 CWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAW----------------------LGRH 566 (755)
T ss_dssp GTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHH----------------------HHTT
T ss_pred hhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHH----------------------HHHC
Confidence 01122222221 111222222 3334
Q ss_pred CCCcc-CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHH
Q 040741 396 GVDED-MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYE 441 (457)
Q Consensus 396 g~~~~-~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~ 441 (457)
|+..+ ...+.+|+.++..+|++++++++++|.++.+.+....|+++
T Consensus 567 gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~~~~~~~~~ 613 (755)
T 2vyc_A 567 GIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQ 613 (755)
T ss_dssp TCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHHHHHHHTCBHHH
T ss_pred CCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHHHhhhcccchhh
Confidence 44332 24589999999999999999999999999887765555543
No 203
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.93 E-value=3.1e-24 Score=216.65 Aligned_cols=331 Identities=13% Similarity=0.066 Sum_probs=221.0
Q ss_pred EEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741 59 LYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN 132 (457)
Q Consensus 59 i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~ 132 (457)
-|||+.+. +..+|++.+++.+.+....... ++....+...+++++++++++.+.++++|++|||+|++
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~------~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~ 149 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVM------FGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVE 149 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCC------SSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHH
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCcc------ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHH
Confidence 68888664 2468999999999987642111 01112256789999999999877778999999999999
Q ss_pred HHHHHhhhhhc---CCC-CEEEEcCCCCcchHHHHHHH-----------HhcCcEEEEEeCCC--CCCCCHHHHHHhcC-
Q 040741 133 VSIKGVMHFYK---DKK-RHVITTQTEHKCVLDSCRHL-----------QQEGFEITYLPVGA--DGIVNLDELRAAIR- 194 (457)
Q Consensus 133 ~al~~~~~~~~---~~g-~~vi~~~~~h~~~~~~~~~~-----------~~~G~~v~~v~~~~--~~~~d~~~le~~i~- 194 (457)
.+++.+..++. .++ +.||+.+..|.+....+..+ ......+..++.+. .+..|+++|+++++
T Consensus 150 ~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~ 229 (457)
T 3tfu_A 150 VAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQ 229 (457)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHh
Confidence 99998874321 133 46666555544433332222 00011333444332 22358899999997
Q ss_pred --CCceEEEEec-cccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cc--cCCCCcccEEEeccccccCC
Q 040741 195 --PDTGLISVMA-VNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PV--DVEKWNVSLMSLSGHKIYGP 262 (457)
Q Consensus 195 --~~t~li~i~~-~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~~~~~~~Di~~~s~~K~~g~ 262 (457)
+++++|+++. ++|++|.+.| +++|.++|++||+++|+|+++. +|.. .+ +.....+|++ |++|.+|.
T Consensus 230 ~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~g 307 (457)
T 3tfu_A 230 HAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTG 307 (457)
T ss_dssp HGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT
T ss_pred CCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhhC
Confidence 6789999999 9999999987 9999999999999999999987 4322 11 1112346877 55594433
Q ss_pred --CCceEEEEecCCCcccc---cc--ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 040741 263 --KGVGALYMRRRPRIRVE---PL--INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKE 335 (457)
Q Consensus 263 --~G~G~l~~~~~~~~~~~---~~--~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~ 335 (457)
.++|+++++++..+.+. +. ..+. ..+.++..+++..++++.+.+ +...++.+++.+++++.|.+
T Consensus 308 G~~~lG~v~~~~~i~~~~~~~~~~~~~~~~-------t~~~n~~a~aaa~aaL~~~~~--~~~~~~~~~~~~~l~~~L~~ 378 (457)
T 3tfu_A 308 GYLSLAATLCTADVAHTISAGAAGALMHGP-------TFMANPLACAVSVASVELLLG--QDWRTRITELAAGLTAGLDT 378 (457)
T ss_dssp TSSCCEEEEEEHHHHHHHHHSSSCSCCCCC-------TTTTCHHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHGG
T ss_pred CCcceEEEEEcHHHHHHhhccCCCceeEec-------CCCcCHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHH
Confidence 35899999987665553 11 1111 125567777777778887655 46677788888888888876
Q ss_pred c--CCCeEEeCCCCCcccceEEEEEcc-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec
Q 040741 336 K--LDGVVVNGSMERRYIGNLNLSFAY-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI 410 (457)
Q Consensus 336 ~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~ 410 (457)
. ++.+..+.. .+.++.+.+.. .+..++...+ +||.+.+. .+.+||++
T Consensus 379 l~~~~~v~~vr~----~G~~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~------------------------~~~lRi~p 430 (457)
T 3tfu_A 379 ARALPAVTDVRV----CGAIGVIECDRPVDLAVATPAALDRGVWLRPF------------------------RNLVYAMP 430 (457)
T ss_dssp GGGSTTEEEEEE----CSSCEEEEESSCCCHHHHHHHHHHTTEECCCB------------------------TTEEEECC
T ss_pred HhcCCCeeeeec----CCeEEEEEECCcccHHHHHHHHHHCCeEEEec------------------------CCEEEEEC
Confidence 1 344433211 14445555543 2345565555 68777542 16899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 411 GRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 411 ~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
+..+|+||+++++++|++++++++
T Consensus 431 ~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 431 PYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998754
No 204
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.93 E-value=1.3e-23 Score=212.65 Aligned_cols=335 Identities=13% Similarity=0.076 Sum_probs=218.9
Q ss_pred CCCcEEecCCCCC------CCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741 55 AGRPLYLDMQATT------PVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA 127 (457)
Q Consensus 55 ~~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~ 127 (457)
..+.-|+|+.++. ..+|++.+++.+.+.... .++. .....+...+++++++++++.+.++++|++||
T Consensus 47 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~------~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gg 120 (459)
T 4a6r_A 47 SEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTF------FKTTHPAVVELSSLLAEVTPAGFDRVFYTNSG 120 (459)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTT------SSSCCHHHHHHHHHHHHHSCTTCCEEEEESSH
T ss_pred CCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccc------cccCCHHHHHHHHHHHHhCCCCCCEEEEeCch
Confidence 3445688887642 357999999999987642 1111 01122577889999999998877889999999
Q ss_pred HHHHHHHHHHhhhhhc----CCCCEEEEcCCCCcchHHHHHHHHh----------cCcEEEEEeCCC----CCCCC----
Q 040741 128 TESNNVSIKGVMHFYK----DKKRHVITTQTEHKCVLDSCRHLQQ----------EGFEITYLPVGA----DGIVN---- 185 (457)
Q Consensus 128 T~a~~~al~~~~~~~~----~~g~~vi~~~~~h~~~~~~~~~~~~----------~G~~v~~v~~~~----~~~~d---- 185 (457)
++|++.+++.+..+.. .+++.||+..+.|.+....+..+.. ....+..++.+. +..+|
T Consensus 121 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 200 (459)
T 4a6r_A 121 SESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEF 200 (459)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHH
Confidence 9999999999884321 1467888777766665544444311 011344455332 11134
Q ss_pred ----HHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCc
Q 040741 186 ----LDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWN 248 (457)
Q Consensus 186 ----~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~ 248 (457)
+++|+++++ +++++|+++.++++.|.+.+ +++|.++|++||+++|+|++|+ +|... . ......
T Consensus 201 ~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 280 (459)
T 4a6r_A 201 GVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQ 280 (459)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCC
Confidence 788998886 46788889888888898887 9999999999999999999987 43221 1 111224
Q ss_pred ccEEEeccccccCC--CCceEEEEecCCCcccc---ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHH
Q 040741 249 VSLMSLSGHKIYGP--KGVGALYMRRRPRIRVE---PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRIT 323 (457)
Q Consensus 249 ~Di~~~s~~K~~g~--~G~G~l~~~~~~~~~~~---~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~ 323 (457)
+|++++| |.++. .++|+++++++..+.+. +...+. ..+.++..+++..++++.+.+ +...++.+
T Consensus 281 pdi~t~s--K~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~-------t~~~~~~~~aaa~aal~~~~~--~~~~~~~~ 349 (459)
T 4a6r_A 281 PDLFTAA--KGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGF-------TYSGHPVCAAVAHANVAALRD--EGIVQRVK 349 (459)
T ss_dssp CSEEEEC--GGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHH-------HHCSCHHHHHHHHHHHHHHHH--TCHHHHHH
T ss_pred CCeeehh--hhhcCCCCCccceeeCHHHHHHhhcCCCcccCC-------CCCCCHHHHHHHHHHHHHHhc--chHHHHHH
Confidence 6777654 95433 35899999887666554 212111 124566677777778887654 33444444
Q ss_pred -HHHHHHHHHH----hhcCCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCCC
Q 040741 324 -ALHDRLLNGI----KEKLDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTSA 384 (457)
Q Consensus 324 -~~~~~l~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~~ 384 (457)
++.+++++.| .+ ++.+..+.. .+.++.+.+.... ...+...+ +||.+.++.
T Consensus 350 ~~~~~~~~~~l~~~l~~-~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g----- 419 (459)
T 4a6r_A 350 DDIGPYMQKRWRETFSR-FEHVDDVRG----VGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG----- 419 (459)
T ss_dssp HTHHHHHHHHHHHHHTT-CTTEEEEEE----ETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET-----
T ss_pred HHHHHHHHHHHHHHHhc-CCCeEEEEE----EEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC-----
Confidence 4444444444 44 555543321 1444455553211 22344444 688776542
Q ss_pred CCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741 385 SLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 385 ~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~ 435 (457)
+.|||+++..++++++++++++|+++++++.+
T Consensus 420 -------------------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 420 -------------------DHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp -------------------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999988754
No 205
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.93 E-value=2.6e-23 Score=210.43 Aligned_cols=337 Identities=13% Similarity=0.055 Sum_probs=218.9
Q ss_pred CCcEEecCCCC------CCCCHHHHHHHHHHHhhccC-CCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741 56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYG-NPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT 128 (457)
Q Consensus 56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T 128 (457)
.+.-|+|+.+. +..+|++.+++.+.+..... .+. .....+...+++++++++++.+.++++|++||+
T Consensus 49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~------~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGs 122 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAY------VGHGTEASITLAKMIIDRAPKGMSRVYFGLSGS 122 (460)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCC------TTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccc------cccCCHHHHHHHHHHHhhCCCCcCEEEEeCchH
Confidence 44568887654 23579999999998876321 111 111125678899999999887777899999999
Q ss_pred HHHHHHHHHhhhhhc----CCCCEEEEcCCCCcchHHHHHHHH----------hcCcEEEEEeCCC-----CCCCC----
Q 040741 129 ESNNVSIKGVMHFYK----DKKRHVITTQTEHKCVLDSCRHLQ----------QEGFEITYLPVGA-----DGIVN---- 185 (457)
Q Consensus 129 ~a~~~al~~~~~~~~----~~g~~vi~~~~~h~~~~~~~~~~~----------~~G~~v~~v~~~~-----~~~~d---- 185 (457)
+|++.+++.+..+.. .+++.||+..+.|.+....+..+. ..+..+..++.+. +...+
T Consensus 123 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 202 (460)
T 3gju_A 123 DANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQF 202 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHH
Confidence 999999998874321 145778776666655544444331 0112355565432 11122
Q ss_pred ----HHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCc
Q 040741 186 ----LDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWN 248 (457)
Q Consensus 186 ----~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~ 248 (457)
+++|+++++ +++++|+++.+++++|.+.+ +++|.++|++||+++|+|++|+ +|... . ......
T Consensus 203 ~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~ 282 (460)
T 3gju_A 203 SQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIK 282 (460)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCC
Confidence 688998886 56789999999999998776 9999999999999999999998 44221 1 111224
Q ss_pred ccEEEeccccccCC--CCceEEEEecCCCcccccc-------ccCCccccccccCCCChhHHHHHHHHHHHHHHh--hHH
Q 040741 249 VSLMSLSGHKIYGP--KGVGALYMRRRPRIRVEPL-------INGGGQERGIRSGTLPTPLIVGFGSACEIAKKE--MDY 317 (457)
Q Consensus 249 ~Di~~~s~~K~~g~--~G~G~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~--~~~ 317 (457)
+|++++ +|.++. .++|+++++++..+.+... ..+ ...+.++..+++..++++.+.++ +++
T Consensus 283 pdi~t~--sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~-------~t~~~~~~~~aaa~aal~~~~~~~~~~~ 353 (460)
T 3gju_A 283 PDLITI--AKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHG-------WTYSAHPICVAAGVANLELIDEMDLVTN 353 (460)
T ss_dssp CSEEEE--CGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCC-------CTTTTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CCeeee--ehhhcCCCCCeEEEEECHHHHHHHhcccccccccccC-------CCCCCCHHHHHHHHHHHHHHHhccHHHH
Confidence 677755 595543 3589999998766655321 111 11245667777777888876552 344
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCC
Q 040741 318 DHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTS 383 (457)
Q Consensus 318 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~ 383 (457)
..+....+.+.+.+.+.+ ++.+..+.. .+.++.+.+.... ...+...+ +||.+.++.
T Consensus 354 ~~~~~~~~~~~l~~~l~~-~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---- 424 (460)
T 3gju_A 354 AGETGAYFRAELAKAVGG-HKNVGEVRG----DGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP---- 424 (460)
T ss_dssp HHHHHHHHHHHHHHHHTT-STTEEEEEE----ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS----
T ss_pred HHHHHHHHHHHHHHHHhc-CCCeEEEee----eeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC----
Confidence 444444445555555555 555543321 1344445553211 12344444 688776542
Q ss_pred CCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 384 ASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 384 ~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
..+.|||+++..+++|++++++++|+++++++.
T Consensus 425 ------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 425 ------------------QGDILGFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp ------------------SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 127999999999999999999999999998764
No 206
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.93 E-value=1.2e-23 Score=213.58 Aligned_cols=354 Identities=12% Similarity=0.083 Sum_probs=225.4
Q ss_pred CCCcEEecCCCC------CCCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741 55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA 127 (457)
Q Consensus 55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~ 127 (457)
..+.-|||+.+. +..+|++.+|+.+.+.... +.+.. ...+...+++++++++++.+.+.++|++||
T Consensus 51 ~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-------~~~~~~~~la~~l~~~~~~~~~~v~~~~sG 123 (476)
T 3i5t_A 51 EDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWY-------MATSPAARLAEKIATLTPGDLNRIFFTTGG 123 (476)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTT-------CBCHHHHHHHHHHHTTSSTTCCEEEEESSH
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccCc-------cCCHHHHHHHHHHHhcCCCCcCEEEEeCch
Confidence 344568887654 2468999999999987632 11111 122577889999999998767789999999
Q ss_pred HHHHHHHHHHhhhhhcC----CCCEEEEcCCCCcchHHHHHHHHh----------cCcEEEEEeCCC--CC-CCC-----
Q 040741 128 TESNNVSIKGVMHFYKD----KKRHVITTQTEHKCVLDSCRHLQQ----------EGFEITYLPVGA--DG-IVN----- 185 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~----~g~~vi~~~~~h~~~~~~~~~~~~----------~G~~v~~v~~~~--~~-~~d----- 185 (457)
++|++.+++.+..++.. .++.||+..+.|.+....+..+.. ....+..++.+. .. ..|
T Consensus 124 seA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 203 (476)
T 3i5t_A 124 STAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFL 203 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHH
Confidence 99999999988754221 245677666555544443333210 011233444331 11 112
Q ss_pred ---HHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cc--c-CCCCc
Q 040741 186 ---LDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PV--D-VEKWN 248 (457)
Q Consensus 186 ---~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~-~~~~~ 248 (457)
+++|+++++ +++++|+++.++++.|.+.+ +++|.++|++||+++|+|++|+ +|.. .+ . .....
T Consensus 204 ~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~ 283 (476)
T 3i5t_A 204 DDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVV 283 (476)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCC
Confidence 788998886 56789999999999998766 9999999999999999999997 4322 11 1 22234
Q ss_pred ccEEEeccccccC-C-CCceEEEEecCCCccccccccCCc-cccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 040741 249 VSLMSLSGHKIYG-P-KGVGALYMRRRPRIRVEPLINGGG-QERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITAL 325 (457)
Q Consensus 249 ~Di~~~s~~K~~g-~-~G~G~l~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~ 325 (457)
+|++++| |.+| + .++|+++++++..+.+.+...... ... ......++..+++..++++.+.+ +...++.+++
T Consensus 284 pdi~t~s--K~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~-~~t~~~np~a~aAa~aaL~~~~~--~~~~~~~~~~ 358 (476)
T 3i5t_A 284 PDIITFA--KGVTSGYVPLGGLAISEAVLARISGENAKGSWFTN-GYTYSNQPVACAAALANIELMER--EGIVDQAREM 358 (476)
T ss_dssp CSEEEEC--GGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECC-CCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHH
T ss_pred cchhhhh--hhhcCCCcCeEEEEECHHHHHHHhcCCcccccccc-cCCCCcCHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence 7887655 9543 3 458999998876666554210000 000 01124567777777788887765 5667778888
Q ss_pred HHHHHHHHhh--cCCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCCCCCChh
Q 040741 326 HDRLLNGIKE--KLDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTSASLEPS 389 (457)
Q Consensus 326 ~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~ 389 (457)
.+++++.|++ .++.+..+. ..+.++.+.+.... ...+...+ +||.+.+.
T Consensus 359 ~~~l~~~L~~l~~~~~v~~v~----~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------- 423 (476)
T 3i5t_A 359 ADYFAAALASLRDLPGVAETR----SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL----------- 423 (476)
T ss_dssp HHHHHHHHHTTTTSTTEEEEE----EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE-----------
T ss_pred HHHHHHHHHHHhcCCCeEEEE----ecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec-----------
Confidence 8888888875 133333321 12444445553211 22333434 57776542
Q ss_pred HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHHHHHhcCC
Q 040741 390 YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGID 448 (457)
Q Consensus 390 ~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
.+.|||+++..++++++++++++|+++++++.+...+-++.++-.+
T Consensus 424 -------------g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 469 (476)
T 3i5t_A 424 -------------GDLCVISPPLIISRAQIDEMVAIMRQAITEVSAAHGLTAKEPAAVE 469 (476)
T ss_dssp -------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCC--------
T ss_pred -------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHhCcccccccccc
Confidence 1699999999999999999999999999988776666665554443
No 207
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.92 E-value=1.2e-23 Score=213.07 Aligned_cols=336 Identities=13% Similarity=0.076 Sum_probs=220.4
Q ss_pred CCCcEEecCCCC------CCCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741 55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA 127 (457)
Q Consensus 55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~ 127 (457)
..+.-|+|+.+. +..+|++.+|+.+.+.... ..+.. ....+...+++++|+++++.+.++++|++||
T Consensus 52 ~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~------~~~~~~~~~lae~l~~~~~~~~~~v~~~~sG 125 (472)
T 3hmu_A 52 SEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFF------KTTHVPAIALAQKLAELAPGDLNHVFFAGGG 125 (472)
T ss_dssp TTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSS------SEECHHHHHHHHHHHHHSCTTEEEEEEESSH
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccccccc------ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCH
Confidence 345568988654 2458999999999987642 11110 1122577789999999998767789999999
Q ss_pred HHHHHHHHHHhhhhhc----CCCCEEEEcCCCCcchHHHHHHHHh---------cCcEEEEEeCCC----CCCCC-----
Q 040741 128 TESNNVSIKGVMHFYK----DKKRHVITTQTEHKCVLDSCRHLQQ---------EGFEITYLPVGA----DGIVN----- 185 (457)
Q Consensus 128 T~a~~~al~~~~~~~~----~~g~~vi~~~~~h~~~~~~~~~~~~---------~G~~v~~v~~~~----~~~~d----- 185 (457)
++|++.+++.+..+.. .+++.||+..+.|.+....+..+.. ....+..++.+. +...|
T Consensus 126 seA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~ 205 (472)
T 3hmu_A 126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFG 205 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHH
Confidence 9999999998875321 1356777666655554444333310 011345555432 10133
Q ss_pred ---HHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCcc
Q 040741 186 ---LDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWNV 249 (457)
Q Consensus 186 ---~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~~ 249 (457)
+++|+++++ +++++|+++.++++.|.+.| +++|.++|++||+++|+|++|+ +|... . ......+
T Consensus 206 ~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~p 285 (472)
T 3hmu_A 206 LARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRP 285 (472)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCC
Confidence 788888886 56789999999999999987 9999999999999999999997 43221 1 1112246
Q ss_pred cEEEeccccccCC--CCceEEEEecCCCcccccc--ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHH-H
Q 040741 250 SLMSLSGHKIYGP--KGVGALYMRRRPRIRVEPL--INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRIT-A 324 (457)
Q Consensus 250 Di~~~s~~K~~g~--~G~G~l~~~~~~~~~~~~~--~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~-~ 324 (457)
|++++| |.+|. .++|+++++++..+.+.+. ..++ ....++..+++..++++.+++ +...++.+ +
T Consensus 286 di~t~s--K~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~-------t~~~np~a~aAa~aaL~~~~~--~~~~~~~~~~ 354 (472)
T 3hmu_A 286 HIMTIA--KGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGY-------TYSGHPVAAAVALENLRILEE--ENILDHVRNV 354 (472)
T ss_dssp SEEEEC--GGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCC-------TTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHT
T ss_pred ceeeec--hhhhcCCcceEEEEECHHHHHhcccCCccccC-------CCCCCHHHHHHHHHHHHHHHH--hHHHHHHHHH
Confidence 887655 95443 3589999998766555211 1111 124566777777778887765 45666777 7
Q ss_pred HHHHHHHHHhhc--CCCeEEeCCCCCcccceEEEEEcccc-------------chHHHhcc--cCeEecccCccCCCCCC
Q 040741 325 LHDRLLNGIKEK--LDGVVVNGSMERRYIGNLNLSFAYVE-------------GESLLMGL--KEVAVSSGSACTSASLE 387 (457)
Q Consensus 325 ~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l--~~i~~~~g~~~~~~~~~ 387 (457)
+.+++++.|++. ++.+..+. ..+.++.+.+.... ...+...+ +||.+.++.
T Consensus 355 ~~~~l~~~L~~l~~~~~v~~vr----~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-------- 422 (472)
T 3hmu_A 355 AAPYLKEKWEALTDHPLVGEAK----IVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG-------- 422 (472)
T ss_dssp HHHHHHHHHHGGGGSTTEEEEE----EETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET--------
T ss_pred HHHHHHHHHHHHhcCCCeEEEE----ecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC--------
Confidence 777777777551 34343321 12444455553210 12333333 576665431
Q ss_pred hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741 388 PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 388 ~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~ 435 (457)
++|||+++..+|++|+++++++|+++++++.+
T Consensus 423 ----------------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~~ 454 (472)
T 3hmu_A 423 ----------------DRMIISPPLVITPAEIDEMFVRIRKSLDEAQA 454 (472)
T ss_dssp ----------------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999987653
No 208
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.92 E-value=4e-25 Score=216.20 Aligned_cols=311 Identities=16% Similarity=0.151 Sum_probs=206.0
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCE
Q 040741 69 VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRH 148 (457)
Q Consensus 69 ~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~ 148 (457)
++|++.+++.+.... ..++ ..+...++++++++++|.+. .++++|||+|+.++++++. .+++.
T Consensus 27 ~~p~v~~ai~~~~~~---------~~~~--~~~~~~~l~~~la~~~~~~~--~i~~~~g~~a~~~a~~~~~----~~g~~ 89 (359)
T 3pj0_A 27 VLTEALQNIDDNLES---------DIYG--NGAVIEDFETKIAKILGKQS--AVFFPSGTMAQQIALRIWA----DRKEN 89 (359)
T ss_dssp HHHHHTTTSCTTCBC---------CBTT--BSHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHH----HHHTC
T ss_pred CCHHHHHHHHhhccc---------Cccc--CCHHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHH----hcCCC
Confidence 478888887773321 1112 23578899999999999865 5777899999999999887 56665
Q ss_pred --EEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccc-ccccChHH---HHHHH
Q 040741 149 --VITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEI-GVIQPMEE---IGQIC 222 (457)
Q Consensus 149 --vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~-G~~~~l~~---i~~l~ 222 (457)
|+++...|.+...........|.+++.++. .++.+|+++++++ .+++++|++++++|++ |.+.|.++ |.++|
T Consensus 90 ~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~ 167 (359)
T 3pj0_A 90 RRVAYHPLSHLEIHEQDGLKELQQITPLLLGT-ANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYC 167 (359)
T ss_dssp CEEEECTTCHHHHSSTTHHHHHHCCEEEECSC-TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHH
T ss_pred cEEEEeccceeeehhcchHHHhcCceEEecCC-cCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHH
Confidence 667766665543322121233999999887 4678999999998 8889999999999997 78888555 49999
Q ss_pred HhcCCcEEEehhhhcCCC------cccCCCCcccEEEecccccc-CCCCceEEEEecCCCccccccccCCccccccccCC
Q 040741 223 KEFKIPFHTDAAQALGKI------PVDVEKWNVSLMSLSGHKIY-GPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT 295 (457)
Q Consensus 223 ~~~~v~li~D~a~~~g~~------~~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t 295 (457)
++||+++|+|+++..+.. +..+. .+.|+++.|+||.+ ++.| |+++.+++.++++.......+. ....
T Consensus 168 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~~----~~~~ 241 (359)
T 3pj0_A 168 HEQGISLHLDGARLWEITPFYQKSAEEIC-ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYGG----DLIS 241 (359)
T ss_dssp HHHTCEEEEEETTCGGGHHHHTCCHHHHH-TTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTC----CCSC
T ss_pred HHcCCEEEEECcchhcchhhhCCCHHHhh-ccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhCC----Ccch
Confidence 999999999999865432 11111 25689999999955 4555 8888887766665432211000 0001
Q ss_pred CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc---cchHHHhcc--
Q 040741 296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV---EGESLLMGL-- 370 (457)
Q Consensus 296 ~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l-- 370 (457)
.+....+++ .+++ ... +..++..++++++.+.|++ ++++.+...+.. .+++.+.++.. +...+...+
T Consensus 242 ~~~~~~a~~-~~l~---~~~-~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~ 313 (359)
T 3pj0_A 242 LYPYILSAD-YYFE---KRI-GKMAEYFEAAKGLAERFNS-CSGVKTVPEVPV--SNMFHVYFENSADEIGAILTKIQDE 313 (359)
T ss_dssp CHHHHHHHH-HHHH---HHG-GGHHHHHHHHHHHHHHHHT-STTEEEESSSCS--SSEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHHH---HHH-HHhHHHHHHHHHHHHHHhh-CCCceeeccCCc--ceEEEEEecCccchhHHHHHHHHHh
Confidence 111122211 2322 222 4445678888999999999 889988532222 45556666532 234555555
Q ss_pred cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC---CCHHHHHHHHHHHHHH
Q 040741 371 KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF---TTEAEVDRAIELTVKQ 429 (457)
Q Consensus 371 ~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~---~t~edid~~~~~l~~~ 429 (457)
+||.+.+|..+.. ...+++|++++.. .+.++++.++++|.+.
T Consensus 314 ~GV~v~~g~~~~~-----------------~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 314 TGVGISGYLQEKS-----------------ADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp HCEECCSCCEEEE-----------------TTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred cCcEecCCccccC-----------------CCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 6999988854321 1236899988643 4788898888888765
No 209
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.92 E-value=3.2e-25 Score=219.66 Aligned_cols=280 Identities=16% Similarity=0.160 Sum_probs=198.9
Q ss_pred HHHHHHHHHHhCC-----CC-CcEEEeCChHHHHHHHHHHhhhhhcCCCC----EEEEcCCCCcchHHHHHHHHhcCcEE
Q 040741 104 ETARSQIADLIGA-----SP-KEIIFTSGATESNNVSIKGVMHFYKDKKR----HVITTQTEHKCVLDSCRHLQQEGFEI 173 (457)
Q Consensus 104 ~~~~~~la~~~g~-----~~-~~i~~t~g~T~a~~~al~~~~~~~~~~g~----~vi~~~~~h~~~~~~~~~~~~~G~~v 173 (457)
.++++.++++++. ++ +++++|+|+++++.+++.++. ++|| +|+++.++|+.+...++.. |.++
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~----~~Gd~~~~~Vlv~~P~y~~~~~~~~~~---g~~~ 143 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALS----SLARSQPVSVVAAAPFYSTYVEETTYV---RSGM 143 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHH----HTSSSSSEEEEECSSCCTHHHHHHHTT---CBTT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhc----CCCCCCcceEEEcCCCchhHHHHHHHc---CCeE
Confidence 6788888888872 34 589999999999999999998 7899 9999999999988777655 8888
Q ss_pred EEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCC-cccCCCCcccEE
Q 040741 174 TYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI-PVDVEKWNVSLM 252 (457)
Q Consensus 174 ~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~-~~~~~~~~~Di~ 252 (457)
+.++++.++. + .+++++|++++++||||.+.+ +|++.++++++++|+|++|..+.. ++.. ..+.+++
T Consensus 144 ~~~~~d~~~l-~--------~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~-~~~~~i~ 211 (391)
T 3bwn_A 144 YKWEGDAWGF-D--------KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITR-RQDHDIM 211 (391)
T ss_dssp EEEEEESTTC-C--------CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCCC-CBCCSEE
T ss_pred EEecCCHHHc-C--------CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCcccc-CCCCeEE
Confidence 8888764431 1 357899999999999999986 444322222399999999985422 2222 3457899
Q ss_pred EeccccccCCCC--ceEEEE-ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHH----------HhhHHHH
Q 040741 253 SLSGHKIYGPKG--VGALYM-RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK----------KEMDYDH 319 (457)
Q Consensus 253 ~~s~~K~~g~~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~----------~~~~~~~ 319 (457)
+.|+||.||++| +|++++ +++.++++..... ....+.+.....++..+++... ..+++..
T Consensus 212 ~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 284 (391)
T 3bwn_A 212 LFTFSKITGHAGSRIGWALVKDKEVAKKMVEYII-------VNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGR 284 (391)
T ss_dssp EEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHH-------HHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHH
T ss_pred EEechhhcCCCccceEEEEecCHHHHHHHHHHhc-------ccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHH
Confidence 999999998777 599998 6555555543332 1123556666666666776542 3478888
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEeCCCCCc----------ccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCC
Q 040741 320 KRITALHDRLLNGIKEKLDGVVVNGSMERR----------YIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLE 387 (457)
Q Consensus 320 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~ 387 (457)
++++++++++.+.|++ ++++.+..+.... .+.++.+.++. .+.+...+ +||.+.+|..|..
T Consensus 285 ~~~~~~~~~l~~~L~~-~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~--~~~~~~~l~~~gV~v~pg~~fg~---- 357 (391)
T 3bwn_A 285 EMMKNRWEKLREVVKE-SDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE--ETDLVSELRRHKVMSRAGERCGS---- 357 (391)
T ss_dssp HHHHHHHHHHHHHHHT-CSSEECCCCCCEEETTTTEEECCCCSEEEEEESS--SCCHHHHHHHTTEECEEGGGGTC----
T ss_pred HHHHHHHHHHHHHHHh-CCCcccccCCccccccccccCCCcceEEEecCCc--HHHHHHHHHHCCEEEccCCCCCC----
Confidence 9999999999999999 7787765432211 11234455542 23333333 6999999986631
Q ss_pred hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 388 PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 388 ~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
..+++||+++. +++++++++++|++++++
T Consensus 358 --------------~~~~iRis~~~--~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 358 --------------DKKHVRVSMLS--REDVFNVFLERLANMKLI 386 (391)
T ss_dssp --------------CTTEEEEESCS--CHHHHHHHHHHHHSCC--
T ss_pred --------------CCCEEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 13799999984 789999999999988754
No 210
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.92 E-value=3.1e-23 Score=208.28 Aligned_cols=324 Identities=15% Similarity=0.150 Sum_probs=211.7
Q ss_pred CCCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741 55 AGRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT 128 (457)
Q Consensus 55 ~~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T 128 (457)
..+.-|||+.++. ..+|++.+++.+.+.....+ ++ ..+...+++++++++++ ++++++|++|||
T Consensus 52 ~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--------~~-~~~~~~~l~~~la~~~~-~~~~v~~~~sGs 121 (434)
T 3l44_A 52 VDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLY--------GT-PTALEVKFAKMLKEAMP-ALDKVRFVNSGT 121 (434)
T ss_dssp TTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCC--------SS-CCHHHHHHHHHHHHHCT-TCSEEEEESSHH
T ss_pred CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCC--------CC-CCHHHHHHHHHHHHhCC-CCCEEEEeCchH
Confidence 3455689987654 25899999999998763211 11 12567788899999997 677899999999
Q ss_pred HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcC-----------------cEEEEEeCCCCCCCCHHHHHH
Q 040741 129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEG-----------------FEITYLPVGADGIVNLDELRA 191 (457)
Q Consensus 129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G-----------------~~v~~v~~~~~~~~d~~~le~ 191 (457)
+|++++++.+..+ .++++||+..+.|.+....+..+...+ ..+..++.+ |+++|++
T Consensus 122 ea~~~ai~~a~~~--~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~ 194 (434)
T 3l44_A 122 EAVMTTIRVARAY--TGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKE 194 (434)
T ss_dssp HHHHHHHHHHHHH--HCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHH
T ss_pred HHHHHHHHHHHHh--hCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHH
Confidence 9999999987632 367888887776655433222110000 123333322 8999999
Q ss_pred hcC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcC---CCc-ccCCCCcccEEEecccccc
Q 040741 192 AIR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALG---KIP-VDVEKWNVSLMSLSGHKIY 260 (457)
Q Consensus 192 ~i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g---~~~-~~~~~~~~Di~~~s~~K~~ 260 (457)
+++ +++++|+++++++++|.+.| +++|.++|++||+++|+|++|+.. ... .+.....+|+++ ++|.+
T Consensus 195 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~t--~sK~~ 272 (434)
T 3l44_A 195 ALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLTA--LGKVI 272 (434)
T ss_dssp HHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEEE--EEGGG
T ss_pred HHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCeee--hhhhh
Confidence 987 56788999999888999988 999999999999999999999732 110 111122467665 45955
Q ss_pred C-CCCceEEEEecCCCcccccc---ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 040741 261 G-PKGVGALYMRRRPRIRVEPL---INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK 336 (457)
Q Consensus 261 g-~~G~G~l~~~~~~~~~~~~~---~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 336 (457)
| +.++|+++++++.++.+.+. ..+ ...+.++..+++..++++.+.+ +...++.+++.+++++.|.+.
T Consensus 273 ~~G~~iG~~~~~~~i~~~~~~~~~~~~~-------~t~~~~~~a~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~ 343 (434)
T 3l44_A 273 GGGLPIGAYGGKKEIMEQVAPLGPAYQA-------GTMAGNPASMASGIACLEVLQQ--EGLYEKLDELGATLEKGILEQ 343 (434)
T ss_dssp GTTSSCEEEEECHHHHTTBTTTSSBCCC-------CTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCeeeEEEcHHHHHhhccCCCcccC-------CCCCcCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHH
Confidence 4 34589999988766665442 111 1125566777777777776654 455566666666666666541
Q ss_pred ---CCCeEEeCCCCCcccceEEEEEcccc--------------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741 337 ---LDGVVVNGSMERRYIGNLNLSFAYVE--------------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV 397 (457)
Q Consensus 337 ---~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~ 397 (457)
++...... ..+.++.+.+.... ...+...+ +||.+.++..
T Consensus 344 ~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------------- 402 (434)
T 3l44_A 344 AAKHNIDITLN----RLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKY----------------- 402 (434)
T ss_dssp HHHTTCCEEEE----EETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTT-----------------
T ss_pred HHhCCCCEEEE----eeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCC-----------------
Confidence 23222111 12455555553211 13344444 6888776531
Q ss_pred CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741 398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~ 435 (457)
..+|++ ..++++|+++++++|+++++++++
T Consensus 403 ------~~~rl~--~~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 403 ------EAWFLT--TEHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp ------CCEECC--TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CcEEEe--cccCHHHHHHHHHHHHHHHHHHHh
Confidence 467875 467999999999999999988754
No 211
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.92 E-value=8.1e-24 Score=210.26 Aligned_cols=268 Identities=13% Similarity=0.037 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHh--hccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEE--eCChHHHHHHHHHHhhhhhcCCC
Q 040741 71 PRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIF--TSGATESNNVSIKGVMHFYKDKK 146 (457)
Q Consensus 71 ~~v~~a~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~--t~g~T~a~~~al~~~~~~~~~~g 146 (457)
++|+++|.+... ..++ + +..|.|+.. ...++++.+++++|++.. +++ ++|||+|+.+++.+++ ++|
T Consensus 46 ~~Vl~A~~~~~~~~~~~~-~-~~gy~y~~~---~~~~Le~~lA~l~g~e~a-lv~p~~~sGt~Ai~~al~all----~pG 115 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFT-N-SSGYGYGDI---GRDSLDAVYARVFNTESA-LVRPHFVNGTHALGAALFGNL----RPG 115 (427)
T ss_dssp HHHHHHHHHTTCCGGGSC-C-CCTTCTTCH---HHHHHHHHHHHHHTCSEE-EEETTCCSHHHHHHHHHHHHC----CTT
T ss_pred HHHHHHHHHhchhHHhcC-C-CCCCCCCHH---HHHHHHHHHHHHhCCcce-EEeCCCccHHHHHHHHHHHHh----CCC
Confidence 468888887642 2232 2 223444433 478899999999998753 443 8999999999999998 899
Q ss_pred CEEEEcC-CCCcchHHHH--------HHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC--CCceEEEEec----ccccccc
Q 040741 147 RHVITTQ-TEHKCVLDSC--------RHLQQEGFEITYLPVGADGIVNLDELRAAIR--PDTGLISVMA----VNNEIGV 211 (457)
Q Consensus 147 ~~vi~~~-~~h~~~~~~~--------~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~--~~t~li~i~~----~~~~~G~ 211 (457)
|+|+++. +.|.+....+ ..+...|++++.++.+.+|.+|+++++++++ +++++|++++ ++||+|.
T Consensus 116 D~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~ 195 (427)
T 3i16_A 116 NTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALL 195 (427)
T ss_dssp CEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCC
T ss_pred CEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCccc
Confidence 9999998 8898887555 3445569999999998888999999999998 8999999999 9999999
Q ss_pred ccChHHHHHHHHh--cCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCC---CCceEEEEecCCCccccccc--cC
Q 040741 212 IQPMEEIGQICKE--FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGP---KGVGALYMRRRPRIRVEPLI--NG 284 (457)
Q Consensus 212 ~~~l~~i~~l~~~--~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~---~G~G~l~~~~~~~~~~~~~~--~~ 284 (457)
+.|+++|+++|++ +|+++++|++|+.+.........++|++++|+||.+|+ ...|++++++++++++.... .+
T Consensus 196 i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~ 275 (427)
T 3i16_A 196 IEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPG 275 (427)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCc
Confidence 9999999999999 99999999999977643344456789999999997665 33599999987777665532 11
Q ss_pred CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC-cccceEEEEEc
Q 040741 285 GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER-RYIGNLNLSFA 359 (457)
Q Consensus 285 ~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (457)
.+.. . .+....... ++..+ ..+..+.++..+++.++.+.|++ ++ +.++..+.. ++..++.+.+.
T Consensus 276 ~g~~----~-~~~~~~a~~---~l~gl-~~~~~r~~~~~~~a~~la~~L~~-~g-~~V~p~~~~~~~~~i~~i~l~ 340 (427)
T 3i16_A 276 IGGE----C-GSTFGVVRS---MYQGL-FLAPHISMEALKGAILCSRIMEL-AG-FEVMPKYDEKRSDIIQSIKFN 340 (427)
T ss_dssp TGGG----C-CCCTTCHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHH-TT-CEEESCTTSCCSSSCEEEECS
T ss_pred cCcc----C-CccHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHh-CC-CeecCCCCCCCccEEEEEEEC
Confidence 1110 0 111110111 12111 23467788899999999999999 54 455533322 22335556654
No 212
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.92 E-value=3.5e-22 Score=201.60 Aligned_cols=334 Identities=13% Similarity=0.055 Sum_probs=213.5
Q ss_pred CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChH
Q 040741 56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGAT 128 (457)
Q Consensus 56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T 128 (457)
.+.-|+|+.++ +..+|++.+++.+.+....... ......+...+++++++++++.+ +++++||+|||
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~------~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGs 135 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTC------FMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGA 135 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCT------TTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccc------cCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHH
Confidence 44568888764 2358999999999987642111 01112356778999999999864 46799999999
Q ss_pred HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHh------cC-----cEEEEEeCCCC----CCCC--------
Q 040741 129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQ------EG-----FEITYLPVGAD----GIVN-------- 185 (457)
Q Consensus 129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~------~G-----~~v~~v~~~~~----~~~d-------- 185 (457)
+|++.+++.+..+ ..++.|++..+.|.+....+..+.. .+ ..+..++.+.. ...+
T Consensus 136 eA~~~alk~a~~~--~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 213 (453)
T 4ffc_A 136 EAVENAIKVARLA--TGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRA 213 (453)
T ss_dssp HHHHHHHHHHHHH--HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHH
Confidence 9999999876632 2456777766665555544443311 01 14556665411 1112
Q ss_pred HHHHHHhcCC-CceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCcccEEEec
Q 040741 186 LDELRAAIRP-DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWNVSLMSLS 255 (457)
Q Consensus 186 ~~~le~~i~~-~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~~Di~~~s 255 (457)
++.|++++.+ ++++|+++.+++..|.+.+ +++|.++|++||+++|+|++|+ +|... . +.....+|++++
T Consensus 214 ~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~- 292 (453)
T 4ffc_A 214 ISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTM- 292 (453)
T ss_dssp HHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE-
T ss_pred HHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhh-
Confidence 4667777764 4567777777777778876 9999999999999999999997 43221 1 111224577655
Q ss_pred cccccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-
Q 040741 256 GHKIYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGI- 333 (457)
Q Consensus 256 ~~K~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l- 333 (457)
+|.+|+ -++|+++++++..+.+.+...+. ....++..+++..++++.+.+ +...++.+++.+++++.|
T Consensus 293 -sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~-------t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~l~ 362 (453)
T 4ffc_A 293 -AKGIAGGMPLSAVTGRAELMDAVYAGGLGG-------TYGGNPVTCAAAVAALGVMRE--LDLPARARAIEASVTSRLS 362 (453)
T ss_dssp -CGGGGTTSSCEEEEEEHHHHTTSCTTSSCC-------SSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHH
T ss_pred -hhhhcCCcCeEEEEECHHHHhhhcccCcCC-------CCCcCHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHH
Confidence 595543 34899999887766665433221 124566667777777877654 234444555555555444
Q ss_pred ---hhcCCCeEEeCCCCCcccceEEEEEcc-----c---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741 334 ---KEKLDGVVVNGSMERRYIGNLNLSFAY-----V---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDED 400 (457)
Q Consensus 334 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~ 400 (457)
.+ ++.+..+.. .+.++.+.+.. . ....+...+ +||.+.++..
T Consensus 363 ~~~~~-~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------- 417 (453)
T 4ffc_A 363 ALAEE-VDIIGEVRG----RGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGT-------------------- 417 (453)
T ss_dssp HHHHH-CSSEEEEEE----ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECT--------------------
T ss_pred HHHhh-CCCeEEEEe----eceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCC--------------------
Confidence 44 555543321 14455555532 1 123344444 6888876531
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 401 MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 401 ~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
..+.+||+++..++++++++++++|+++++++.
T Consensus 418 -~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 418 -FGNVIRLLPPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp -TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 126899999999999999999999999998753
No 213
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.91 E-value=3.9e-23 Score=205.36 Aligned_cols=266 Identities=12% Similarity=0.037 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHhhc--cCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEE---eCChHHHHHHHHHHhhhhhcCC
Q 040741 71 PRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIF---TSGATESNNVSIKGVMHFYKDK 145 (457)
Q Consensus 71 ~~v~~a~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~---t~g~T~a~~~al~~~~~~~~~~ 145 (457)
++|++++.+..... +++ ...+.|+.. ...++++.+++++|.+. .++ ++|||+|+.+++.+++ ++
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~--~~gy~Y~~~---g~~~Le~~lA~l~g~e~--alv~p~~~sGt~A~~~al~all----~p 115 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTN--SSGYGYNDI---GRDSLDRVYANIFNTES--AFVRPHFVNGTHAIGAALFGNL----RP 115 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCC--CCTTCTTCH---HHHHHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHTC----CT
T ss_pred HHHHHHHHHHHHHHHhccc--CcCCCCCch---hHHHHHHHHHHHhCCCc--eEEeCCCCcHHHHHHHHHHHhc----CC
Confidence 67888888864432 222 123333332 37889999999999875 455 8899999999999998 89
Q ss_pred CCEEEEcC-CCCcchHHHH--------HHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC--CCceEEEEec----cccccc
Q 040741 146 KRHVITTQ-TEHKCVLDSC--------RHLQQEGFEITYLPVGADGIVNLDELRAAIR--PDTGLISVMA----VNNEIG 210 (457)
Q Consensus 146 g~~vi~~~-~~h~~~~~~~--------~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~--~~t~li~i~~----~~~~~G 210 (457)
||+|++.. +.|......+ ..+...|++++.++. .++.+|+++++++++ +++++|++++ ++||+|
T Consensus 116 GD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg 194 (427)
T 3hvy_A 116 NDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSL 194 (427)
T ss_dssp TCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCC
T ss_pred CCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccc
Confidence 99999998 8888776443 334456999999998 678899999999998 8999999999 999999
Q ss_pred cccChHHHHHHHHh--cCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCC---CCceEEEEecCCCccccccc--c
Q 040741 211 VIQPMEEIGQICKE--FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGP---KGVGALYMRRRPRIRVEPLI--N 283 (457)
Q Consensus 211 ~~~~l~~i~~l~~~--~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~---~G~G~l~~~~~~~~~~~~~~--~ 283 (457)
.+.++++|+++|++ +|+++++|++|+.+.........++|++++|+||.+|+ ...|++++++++++++.... .
T Consensus 195 ~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~ 274 (427)
T 3hvy_A 195 RIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVP 274 (427)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCT
T ss_pred cHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcC
Confidence 99999999999999 89999999999877633333455789999999997654 22499999887777665532 2
Q ss_pred CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC-cccceEEEEEc
Q 040741 284 GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER-RYIGNLNLSFA 359 (457)
Q Consensus 284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (457)
+.+. .. .++......+...+ ..++.+.++..+++.++.+.|++ + ++.+...+.. ++..++.+.+.
T Consensus 275 ~~g~----~~-~~~~~~a~~~~~gl----~~~~~r~~~~~~~a~~la~~L~~-~-g~~V~p~~~~~~~~li~~~~l~ 340 (427)
T 3hvy_A 275 GIGG----EC-GSTFGVMRSLYEGL----FMAPHVTIEAVKGAVFCARIMEL-A-GFDVLPKYNDKRTDIIQAIKFN 340 (427)
T ss_dssp TTGG----GC-CCCTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-T-TCEEESCTTSCCSSSEEEEECS
T ss_pred Cccc----cc-CCCHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCCCCCCceEEEEEeCC
Confidence 2111 11 11111111111122 23456778888999999999999 5 4466543322 23335555554
No 214
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.91 E-value=3.7e-22 Score=201.32 Aligned_cols=334 Identities=13% Similarity=0.078 Sum_probs=211.5
Q ss_pred CCCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCh
Q 040741 55 AGRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGA 127 (457)
Q Consensus 55 ~~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~ 127 (457)
..+.-|||+.++. ..+|++.+++.+.+.... +.. ......+...+++++++++++.+ +++++||+||
T Consensus 58 ~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~-~~~-----~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sG 131 (451)
T 3oks_A 58 VDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFT-HTC-----FMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSG 131 (451)
T ss_dssp TTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCS-CCT-----TTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSH
T ss_pred CCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcc-ccc-----CCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcH
Confidence 3455688887642 358999999999986531 111 01112256778999999999754 4679999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHh------cC-----cEEEEEeCCCC------C-------C
Q 040741 128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQ------EG-----FEITYLPVGAD------G-------I 183 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~------~G-----~~v~~v~~~~~------~-------~ 183 (457)
|+|++.+++.+..+ ..++.|++....|.+....+..+.. .+ ..+..++.+.. | .
T Consensus 132 seA~~~Alk~a~~~--~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 209 (451)
T 3oks_A 132 SEAVENAVKIARSH--THKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGE 209 (451)
T ss_dssp HHHHHHHHHHHHHH--HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHH
T ss_pred HHHHHHHHHHHHHh--cCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhH
Confidence 99999999887632 2456777766665555544443310 01 14566665411 0 0
Q ss_pred CCHHHHHHhc----C-CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--c--ccCCCCcc
Q 040741 184 VNLDELRAAI----R-PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--P--VDVEKWNV 249 (457)
Q Consensus 184 ~d~~~le~~i----~-~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~--~~~~~~~~ 249 (457)
.+++.+++.+ . +++++|+++.++++.|.+.+ +++|.++|++||+++|+|++|+ +|.. . .+.....+
T Consensus 210 ~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~p 289 (451)
T 3oks_A 210 LAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDP 289 (451)
T ss_dssp HHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCC
Confidence 1344444443 3 35678888888887888877 9999999999999999999997 3321 1 11112246
Q ss_pred cEEEeccccccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741 250 SLMSLSGHKIYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR 328 (457)
Q Consensus 250 Di~~~s~~K~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~ 328 (457)
|++ |++|.+|+ -++|+++++++..+.+.+...+. ..+.++..+++..++++.+.+ +...++.+++.++
T Consensus 290 di~--t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~-------t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~ 358 (451)
T 3oks_A 290 DLI--VTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGG-------TYGGNPIACAAALATIETIES--EGLVARAQQIEKI 358 (451)
T ss_dssp SEE--EECGGGGTTSSCEEEEEEHHHHTCSCTTSBCC-------SSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHH
T ss_pred Cee--eehhhhhCCcceEEEEECHHHHhhhcCCCcCC-------CCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHH
Confidence 777 45595543 34899999887766665433222 124566677777778877655 2444555555555
Q ss_pred HHHHHhhc---CCCeEEeCCCCCcccceEEEEEcc-----c---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHc
Q 040741 329 LLNGIKEK---LDGVVVNGSMERRYIGNLNLSFAY-----V---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRAL 395 (457)
Q Consensus 329 l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~ 395 (457)
+++.|.+. ++.+..+.. .+.++.+.+.. . ....+...+ +||.+.++...
T Consensus 359 l~~~L~~~~~~~~~~~~~~~----~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------- 420 (451)
T 3oks_A 359 MKDRLGRLQAEDDRIGDVRG----RGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTY-------------- 420 (451)
T ss_dssp HHHHHHHHHHHCTTEEEEEE----ETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTT--------------
T ss_pred HHHHHHHHHhhCCCeEEEEE----eeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCC--------------
Confidence 55554431 555433221 14455555522 1 123344444 68888765311
Q ss_pred CCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 396 GVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 396 g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
.+.+||+++..++++++++++++|++++++
T Consensus 421 -------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 421 -------GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp -------SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred -------CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 268999999999999999999999998763
No 215
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.91 E-value=1.6e-23 Score=209.87 Aligned_cols=323 Identities=15% Similarity=0.103 Sum_probs=205.4
Q ss_pred CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+.-|+|+.++. ..+|++.+++.+.+..... +++ ..+...+++++++++++ ++++++|++|||+
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--------~~~-~~~~~~~la~~l~~~~~-~~~~v~~~~ggse 119 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTS--------FGA-PCALENVLAEMVNDAVP-SIEMVRFVNSGTE 119 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSC--------CSS-CCHHHHHHHHHHHHHST-TCSEEEEESSHHH
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCC--------cCC-CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHH
Confidence 445688887654 2489999999999865311 111 23577889999999998 6778999999999
Q ss_pred HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-----H------hcC------cEEEEEeCCCCCCCCHHHHHHh
Q 040741 130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-----Q------QEG------FEITYLPVGADGIVNLDELRAA 192 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-----~------~~G------~~v~~v~~~~~~~~d~~~le~~ 192 (457)
|++++++....+ ..+++||+..+.|.+....+..+ . ..| ..+..++.+ |+++|+++
T Consensus 120 a~~~al~~a~~~--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~ 192 (427)
T 3fq8_A 120 ACMAVLRIMRAY--TGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKAL 192 (427)
T ss_dssp HHHHHHHHHHHH--HCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHH
T ss_pred HHHHHHHHHHHh--hCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHH
Confidence 999999765432 23466666555554322211100 0 001 124444443 89999999
Q ss_pred cCC---CceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc---CCC-cccCCCCcccEEEeccccccC
Q 040741 193 IRP---DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL---GKI-PVDVEKWNVSLMSLSGHKIYG 261 (457)
Q Consensus 193 i~~---~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~---g~~-~~~~~~~~~Di~~~s~~K~~g 261 (457)
+++ ++++|+++++++++|.+.| +++|.++|++||+++|+|++|+. |.. ..+.....+|++++ +|.+|
T Consensus 193 l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~--sK~~~ 270 (427)
T 3fq8_A 193 FAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDLTTL--GKIIG 270 (427)
T ss_dssp HHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSEEEE--CGGGG
T ss_pred HHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCChhhh--hhhhh
Confidence 865 6889999999999999999 99999999999999999999982 111 11112224576654 59666
Q ss_pred C-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---C
Q 040741 262 P-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---L 337 (457)
Q Consensus 262 ~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~ 337 (457)
+ -.+|+++++++.++.+.+..... . ....+.++..+++..++++.+.+ +...++.+++.+++++.|.+. +
T Consensus 271 ~G~~~G~~~~~~~~~~~~~~~~~~~---~-~~t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ 344 (427)
T 3fq8_A 271 GGLPVGAYGGKREIMQLVAPAGPMY---Q-AGTLSGNPLAMTAGIKTLELLRQ--PGTYEYLDQITKRLSDGLLAIAQET 344 (427)
T ss_dssp TTSSCEEEEECHHHHTTBTTTSSBC---C-CCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcceEEEEEcHHHHHhhccCCCcc---c-cCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3 23899999887666655321000 0 01114467777777778876644 455666666666666666541 2
Q ss_pred CCeEEeCCCCCcccceEEEEEcccc--------------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccC
Q 040741 338 DGVVVNGSMERRYIGNLNLSFAYVE--------------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDM 401 (457)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~ 401 (457)
+..... ...+.++.+.+.... ...+...+ +||.+.++..
T Consensus 345 ~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~--------------------- 399 (427)
T 3fq8_A 345 GHAACG----GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF--------------------- 399 (427)
T ss_dssp TCCCEE----EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT---------------------
T ss_pred CCCeEE----EEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCC---------------------
Confidence 211111 112444445543211 12344444 6887765421
Q ss_pred CCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 402 AHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 402 ~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
. |+.++..++++|+++++++|++++++
T Consensus 400 --~--r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 400 --E--AGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp --S--CEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --C--CEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 2 55666778999999999999998864
No 216
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.91 E-value=3.6e-22 Score=200.17 Aligned_cols=324 Identities=15% Similarity=0.119 Sum_probs=202.7
Q ss_pred CCCcEEecCCCCCC------CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741 55 AGRPLYLDMQATTP------VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT 128 (457)
Q Consensus 55 ~~~~i~l~~~~~~~------~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T 128 (457)
..+.-|||+.+... .+|++.+++.+.+.....+ ++ ..+...+++++++++++ .+++++|++|||
T Consensus 50 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~--------~~-~~~~~~~la~~l~~~~~-~~~~v~~~~sGs 119 (429)
T 4e77_A 50 VDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSF--------GA-PTEMEVKMAQLVTDLVP-TMDMVRMVNSGT 119 (429)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC--------SS-CCHHHHHHHHHHHHHST-TCSEEEEESSHH
T ss_pred CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCccc--------CC-CCHHHHHHHHHHHhhCC-CCCEEEEeCcHH
Confidence 34557899876542 5899999999998753211 11 12577889999999997 567899999999
Q ss_pred HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcC-----------c------EEEEEeCCCCCCCCHHHHHH
Q 040741 129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEG-----------F------EITYLPVGADGIVNLDELRA 191 (457)
Q Consensus 129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G-----------~------~v~~v~~~~~~~~d~~~le~ 191 (457)
+|++++++.+..+ .+++.|++....|.+...........| . .+..++.+ |+++|++
T Consensus 120 ea~~~al~~a~~~--~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~ 192 (429)
T 4e77_A 120 EATMSAIRLARGY--TGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVRQ 192 (429)
T ss_dssp HHHHHHHHHHHHH--HCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTT-----CHHHHHH
T ss_pred HHHHHHHHHHHHh--hCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCC-----CHHHHHH
Confidence 9999999965532 245666665555544443211110001 1 12222222 8999999
Q ss_pred hcC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh---cCCCc-ccCCCCcccEEEecccccc
Q 040741 192 AIR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA---LGKIP-VDVEKWNVSLMSLSGHKIY 260 (457)
Q Consensus 192 ~i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~---~g~~~-~~~~~~~~Di~~~s~~K~~ 260 (457)
+++ +++++|++++++++.|.+.| +++|.++|++||+++|+|++|+ .|... .+.....+|++ |++|.+
T Consensus 193 ~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~--t~sK~~ 270 (429)
T 4e77_A 193 AFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLT--CLGKII 270 (429)
T ss_dssp HHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEE--EEEGGG
T ss_pred HHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCee--eecccc
Confidence 986 46788888888888888888 9999999999999999999998 22211 11112245776 555965
Q ss_pred C-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---
Q 040741 261 G-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK--- 336 (457)
Q Consensus 261 g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~--- 336 (457)
| +.++|+++++++.++.+.+..... .....+.++..++++.++++.+.+ +...++.+++.+++++.|.+.
T Consensus 271 ~~G~~~G~~~~~~~~~~~l~~~~~~~----~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~ 344 (429)
T 4e77_A 271 GGGMPVGAFGGRREVMNALAPTGPVY----QAGTLSGNPIAMAAGFACLTEISQ--VGVYETLTELTDSLATGLRHAAKE 344 (429)
T ss_dssp GTTSCCEEEEECHHHHTTBTTTSSBC----C--CCCCCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECHHHHHHhccCCCcc----ccCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 235899999887666655321000 011125677777777788877643 455566666666666666541
Q ss_pred CCCeEEeCCCCCcccceEEEEEccccc---------------hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741 337 LDGVVVNGSMERRYIGNLNLSFAYVEG---------------ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDE 399 (457)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~ 399 (457)
++..... ...+.++.+.+...+. ..+...+ +||.+.++..
T Consensus 345 ~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------------------- 401 (429)
T 4e77_A 345 ENIPLVV----NHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAF------------------- 401 (429)
T ss_dssp TTCCCEE----EEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTT-------------------
T ss_pred CCCceEE----EEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCC-------------------
Confidence 2221111 1124555555543211 4455555 6888765421
Q ss_pred cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
..+|+ +..++++|+++++++|++++++
T Consensus 402 ----~~~~~--~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 402 ----EAGFM--SLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp ----SCEEC--CTTCCHHHHHHHHHHHHHHHTT
T ss_pred ----CCEEE--eccCCHHHHHHHHHHHHHHHHh
Confidence 34454 5667999999999999998753
No 217
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.90 E-value=3.9e-24 Score=214.13 Aligned_cols=324 Identities=10% Similarity=0.048 Sum_probs=217.7
Q ss_pred CCCcEEecCCCCCC-CCHHHHHHHHHHHhhccCCCCCCccchhh-hHHHHHHHHHHHHHHHhC------CCCCcEEEeCC
Q 040741 55 AGRPLYLDMQATTP-VDPRVLDAMLPFYLSRYGNPHSRTHLFGW-ESEVAVETARSQIADLIG------ASPKEIIFTSG 126 (457)
Q Consensus 55 ~~~~i~l~~~~~~~-~~~~v~~a~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~la~~~g------~~~~~i~~t~g 126 (457)
....+.|+.+.+.. .++.+.+++.+.+... +. ....|.... + .....++++.++++++ ++++++++|+|
T Consensus 55 ~~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~-~~-~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G 131 (427)
T 2hox_A 55 QGCSADVASGDGLFLEEYWKQHKEASAVLVS-PW-HRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDRYIVFGVG 131 (427)
T ss_dssp TTCCEECCSCCCGGGHHHHTTSHHHHCEEEC-TT-TTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESH
T ss_pred CCceEEecCcCCCCCCCHHHHHhHHhhhhcC-Cc-ccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCC
Confidence 44567777766653 3456677777665211 10 000010000 1 0125678888888875 67789999999
Q ss_pred hHHHHHHHHHHh--------hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCce
Q 040741 127 ATESNNVSIKGV--------MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTG 198 (457)
Q Consensus 127 ~T~a~~~al~~~--------~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~ 198 (457)
+++++.+++.++ . ++|++|+++.+.|+.+...++.. |.+++... +|+++|+++++++++
T Consensus 132 ~~~al~~~~~~l~~~~~~~~~----~~Gd~Vlv~~P~y~~~~~~~~~~---g~~~~~~~------~d~~~l~~~~~~~~k 198 (427)
T 2hox_A 132 VTQLIHGLVISLSPNMTATPD----APESKVVAHAPFYPVFREQTKYF---DKKGYVWA------GNAANYVNVSNPEQY 198 (427)
T ss_dssp HHHHHHHHHHHHSCCTTTCTT----SCCEEEEECSSCCHHHHHHHHHS---CBTTEEEE------EEGGGGTTCSCGGGE
T ss_pred HHHHHHHHHHHHhhccccccC----CCCCEEEEeCCCcccHHHHHHHc---CCeeeeec------CCHHHHHHhhcCCce
Confidence 999999999999 6 89999999999999988887765 87765432 578899999988899
Q ss_pred EEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCc-ccCCCCcccEEEeccccccCCCC--ceEEEEe-cCC
Q 040741 199 LISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP-VDVEKWNVSLMSLSGHKIYGPKG--VGALYMR-RRP 274 (457)
Q Consensus 199 li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~-~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~-~~~ 274 (457)
+|++++++||+|.+.+ + +++ ++..+.|+++.-.... ..+. .+.++++.|+||.+|.+| +|+++++ ++.
T Consensus 199 ~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~~~-~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l 270 (427)
T 2hox_A 199 IEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIKYK-ADEDILLFTMSKFTGHSGSRFGWALIKDESV 270 (427)
T ss_dssp EEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCCSC-BCCSEEEEEHHHHTSCGGGCCEEEEECCHHH
T ss_pred EEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCCccccC-CCceEEEEeChhcCCCCCceEEEEEECCHHH
Confidence 9999999999999999 4 233 5667888776422111 1222 467999999999888776 8999995 565
Q ss_pred CccccccccCCccccccccCCCChhHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHhhcCCCeEE-
Q 040741 275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK-----------KEMDYDHKRITALHDRLLNGIKEKLDGVVV- 342 (457)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~- 342 (457)
++++...... .....+.....++..+++... ..+++.+++++++++++.+.|++ ++++.+
T Consensus 271 ~~~l~~~~~~-------~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~ 342 (427)
T 2hox_A 271 YNNLLNYMTK-------NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ-SDRFSYQ 342 (427)
T ss_dssp HHHHHHHHHH-------HTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT-SSSEECC
T ss_pred HHHHHHHHHh-------cCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHh-CcCcccc
Confidence 5555543321 111344444444445555432 12456778888999999999998 778876
Q ss_pred -eC-CC--------CCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEe
Q 040741 343 -NG-SM--------ERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG 409 (457)
Q Consensus 343 -~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~ 409 (457)
.. +. ....+.++.+.++. +..++...+ +||.+.+|..|.. ..+++||+
T Consensus 343 ~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~~ll~~~gI~v~pg~~f~~------------------~~~~~Ris 403 (427)
T 2hox_A 343 ELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNGRINTQNGVGFEA------------------SSRYVRLS 403 (427)
T ss_dssp CCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHTTEECEEGGGGTS------------------CTTEEEEE
T ss_pred ccccccccccccccCCCCceEEEEECCC-cHHHHHHHHHHHCCEEEcCCCccCC------------------CCCEEEEE
Confidence 22 11 01113444555553 333444443 6999999876531 13799999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 040741 410 IGRFTTEAEVDRAIELTVKQVE 431 (457)
Q Consensus 410 ~~~~~t~edid~~~~~l~~~~~ 431 (457)
++. ++++++.++++|+++++
T Consensus 404 ~~~--~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 404 LIK--TQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp CSS--CHHHHHHHHHHHHHHHT
T ss_pred ecC--CHHHHHHHHHHHHHHHh
Confidence 985 78999999999998874
No 218
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.90 E-value=2.8e-23 Score=206.94 Aligned_cols=283 Identities=14% Similarity=0.085 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHh-CCC-----CCcEE--EeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEE
Q 040741 102 AVETARSQIADLI-GAS-----PKEII--FTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEI 173 (457)
Q Consensus 102 ~~~~~~~~la~~~-g~~-----~~~i~--~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v 173 (457)
...++++.+++++ |.+ ++++. .+.+|++|+.++...+. .+.++||+|+++.+.|.++...++.. |.++
T Consensus 80 g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~-~~~~~gd~Vlv~~p~y~~~~~~~~~~---g~~~ 155 (409)
T 4eu1_A 80 GIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLN-RFVANCNRIYGPDVGYPNHESIFAKA---GMEL 155 (409)
T ss_dssp CCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGG-GTSSSCCEEEEESSCCTHHHHHHHHT---TCEE
T ss_pred CcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHH-HhcCCCCEEEEeCCCcHhHHHHHHHc---CCeE
Confidence 3467888888876 665 56774 49999999988655332 22278999999999999998877766 9999
Q ss_pred EEEeCC--CCCCCCHHHHHHhcC---CCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc----
Q 040741 174 TYLPVG--ADGIVNLDELRAAIR---PDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP---- 241 (457)
Q Consensus 174 ~~v~~~--~~~~~d~~~le~~i~---~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~---- 241 (457)
+.++.. .++.+|+++++++++ +.++++++++++||||.+.+ +++|+++|++||+++|+|++|+.....
T Consensus 156 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~ 235 (409)
T 4eu1_A 156 TPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDY 235 (409)
T ss_dssp EEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHH
T ss_pred EEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCccc
Confidence 999873 557899999999985 45678888999999999998 555999999999999999998743221
Q ss_pred ----c-cC-CCCcccEEEeccccccCCCC--ceEE--EEec-C----CCccccccccCCccccccccCCCChhHHHHHHH
Q 040741 242 ----V-DV-EKWNVSLMSLSGHKIYGPKG--VGAL--YMRR-R----PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGS 306 (457)
Q Consensus 242 ----~-~~-~~~~~Di~~~s~~K~~g~~G--~G~l--~~~~-~----~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~ 306 (457)
+ .. ......+++.|++|.+|.+| +|++ ++.+ + ....+..... ....+++.....++..
T Consensus 236 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~ 308 (409)
T 4eu1_A 236 DAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIR-------PMYNNPPLYGAWVVSS 308 (409)
T ss_dssp HTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHH-------HHHSSCCHHHHHHHHH
T ss_pred chHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHh-------hhcCCCChHHHHHHHH
Confidence 1 01 11233478889999888666 7886 4443 3 2222222111 1112445555555555
Q ss_pred HHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCCC---eEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEe
Q 040741 307 ACEIA------KKEMDYDHKRITALHDRLLNGIKEKLDG---VVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAV 375 (457)
Q Consensus 307 al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~ 375 (457)
+++.. .+.+++..++++++++++.+.|++ +.. +.+..+. .+++ .+...+.+.....+ +||.+
T Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~----~~~~--~~~~~~~~~~~~ll~~~gv~v 381 (409)
T 4eu1_A 309 ILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKA-CGSVHDWSHIERQ----VGMM--AYTGLTREQVELLRSEYHIYM 381 (409)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCSCCHHHHHS----CSSE--EECCCCHHHHHHHHHHHCEEC
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcceecCC----ceEE--EEeCCCHHHHHHHHHcCCEEE
Confidence 55532 334678888999999999999988 421 3333221 2221 12223333333233 47777
Q ss_pred cccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741 376 SSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV 430 (457)
Q Consensus 376 ~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~ 430 (457)
.+| .||+++.. ++++|++++++|++++
T Consensus 382 ~p~---------------------------~Ri~~~~~-~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 382 TLN---------------------------GRAAVSGL-NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp CTT---------------------------CEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred cCC---------------------------CEEEEEec-CHhhHHHHHHHHHHHh
Confidence 542 37888754 4677999999998875
No 219
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.90 E-value=3.8e-22 Score=200.30 Aligned_cols=321 Identities=14% Similarity=0.059 Sum_probs=208.7
Q ss_pred CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+..|+|+.++ +..+|++.+++.+.+... ... ++ ..+...++++.++++++ .+++++|++|||+
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~--~~~------~~-~~~~~~~l~~~la~~~~-~~~~v~~~~sgse 123 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALARG--WLY------GA-PGEAEVLLAEKILGYVK-RGGMIRFVNSGTE 123 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC--SCC------SS-CCHHHHHHHHHHHHHHC-TTCEEEEESSHHH
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC--CCC------CC-CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHH
Confidence 34467887654 236899999999998752 111 11 12567789999999995 4567999999999
Q ss_pred HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-H-------H---HhcCc------EEEEEeCCCCCCCCHHHHHHh
Q 040741 130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-H-------L---QQEGF------EITYLPVGADGIVNLDELRAA 192 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~-------~---~~~G~------~v~~v~~~~~~~~d~~~le~~ 192 (457)
|+.++++....+ .+++.||+..+.|.+....+. . . ...|+ ++..++.+ |+++|+++
T Consensus 124 A~~~al~~ar~~--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~ 196 (434)
T 2epj_A 124 ATMTAIRLARGY--TGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERV 196 (434)
T ss_dssp HHHHHHHHHHHH--HCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT-----CHHHHHHH
T ss_pred HHHHHHHHHHHh--hCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC-----CHHHHHHH
Confidence 999999974321 234566665555544322111 0 0 01132 35555543 89999999
Q ss_pred cC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCCc---ccC--CCCcccEEEecccccc
Q 040741 193 IR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKIP---VDV--EKWNVSLMSLSGHKIY 260 (457)
Q Consensus 193 i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~~---~~~--~~~~~Di~~~s~~K~~ 260 (457)
++ +++++|+++++++++|.+.| +++|.++|++||+++|+|++|+ |... ... ....+|++ |++|.+
T Consensus 197 l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l 273 (434)
T 2epj_A 197 FAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFRLGLEGAQGYFNIEGDII--VLGKII 273 (434)
T ss_dssp HHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTTSSTTHHHHHHTCCCSEE--EEEGGG
T ss_pred HHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ceeCCcchhhHHhCCCCCee--eecchh
Confidence 87 37889999888888999988 9999999999999999999998 2211 111 11246776 556966
Q ss_pred CC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC--
Q 040741 261 GP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKL-- 337 (457)
Q Consensus 261 g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-- 337 (457)
|+ -.+|+++++++..+.+.+... .. . ....+.++..++++.++++.+.+ +...++.+++.+++++.|++ +
T Consensus 274 ~~G~~~G~v~~~~~~~~~l~~~~~--~~-~-~~t~~~~~~~~aa~~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~-~~~ 346 (434)
T 2epj_A 274 GGGFPVGAVAGSREVMSLLTPQGK--VF-N-AGTFNAHPITMAAGLATLKALEE--EPVYSVSREAAKALEEAASE-VLD 346 (434)
T ss_dssp GTTSSCEEEEECHHHHTTBTTTSS--BC-C-CCTTTTCHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred cCCcceeeeeecHHHHHhhccCCC--cc-c-CCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH-HHh
Confidence 54 238999998876555543110 00 0 01124566677777778887655 55677778888888887766 3
Q ss_pred --CCe-EEeCCCCCcccceEEEEEccc--------------cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCC
Q 040741 338 --DGV-VVNGSMERRYIGNLNLSFAYV--------------EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVD 398 (457)
Q Consensus 338 --~~~-~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~ 398 (457)
+.. .+.+ .+.++.+.+... ....+...| +||.+.++..
T Consensus 347 ~~~~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------------------ 403 (434)
T 2epj_A 347 RTGLPYTINR-----VESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNL------------------ 403 (434)
T ss_dssp HHTCCEEEEE-----ETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT------------------
T ss_pred hCCCcEEEEE-----eeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCC------------------
Confidence 221 1222 245556666431 123455554 6888776521
Q ss_pred ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 399 EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 399 ~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
..+|+ +..++++|+++++++|+++++++
T Consensus 404 -----~~~~~--~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 404 -----EAVFT--GLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp -----SCEEC--CTTCSHHHHHHHHHHHHHHHHHH
T ss_pred -----CcEEE--eccCCHHHHHHHHHHHHHHHHHH
Confidence 23554 45679999999999999998875
No 220
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.90 E-value=9.3e-22 Score=198.59 Aligned_cols=329 Identities=14% Similarity=0.064 Sum_probs=202.5
Q ss_pred CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+..|+|+.++. ..++++.+++.+.+... ... ++ ..+...++.++++++++ ++++++|++||++
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~--~~~------~~-~~~~~~~la~~l~~~~~-~~~~v~~~~gg~e 124 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHG--VQY------AA-SHPLEVRWAERIVAAFP-SIRKLRFTGSGTE 124 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTT--CSS------CS-SCHHHHHHHHHHHHHCT-TCSEEEEESCHHH
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhC--CCC------CC-CCHHHHHHHHHHHhhCC-CCCEEEEeCCHHH
Confidence 344678885552 36899999999998652 111 11 22567778888888886 6678999999999
Q ss_pred HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-H-------HhcCc------EEEEEeCCCCCCCCHHHHHHhcC-
Q 040741 130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-L-------QQEGF------EITYLPVGADGIVNLDELRAAIR- 194 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~-------~~~G~------~v~~v~~~~~~~~d~~~le~~i~- 194 (457)
|+.++++....+. ++ +.||+.++.|.+....+.. . ...|. .+..++. .|+++|+++++
T Consensus 125 A~~~al~~ar~~~-~~-~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~ 197 (453)
T 2cy8_A 125 TTLLALRVARAFT-GR-RMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFAN 197 (453)
T ss_dssp HHHHHHHHHHHHH-CC-CEEEEECC----------------------------CGGGEEEECT-----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-CC-CEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHh
Confidence 9999999832211 44 5666666666544332211 1 00133 2333432 38999999987
Q ss_pred --CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCCc---ccC--CCCcccEEEeccccccCC-
Q 040741 195 --PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKIP---VDV--EKWNVSLMSLSGHKIYGP- 262 (457)
Q Consensus 195 --~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~~---~~~--~~~~~Di~~~s~~K~~g~- 262 (457)
+++++|+++++++++|.+.| +++|.++|++||+++|+|++|+ |... ... ....+|++ |++|.+|+
T Consensus 198 ~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G 274 (453)
T 2cy8_A 198 HGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GFRVGNHGMQALLDVQPDLT--CLAKASAGG 274 (453)
T ss_dssp HGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTCTTHHHHHHTCCCSEE--EEEGGGGTT
T ss_pred cCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccccCchhhhHHhCCCCcEE--EEChhhhCC
Confidence 47788888888888999888 9999999999999999999998 3211 111 12246776 56696553
Q ss_pred CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhc---CC
Q 040741 263 KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEK---LD 338 (457)
Q Consensus 263 ~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~---~~ 338 (457)
.++|+++++++..+.+.+...+... . ....+.++..++++.++++. + . +...++.+++.+++++.|++. ++
T Consensus 275 ~~~G~v~~~~~~~~~l~~~~~~~~~-~-~~t~~~n~~~~aa~~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~ 349 (453)
T 2cy8_A 275 LPGGILGGREDVMGVLSRGSDRKVL-H-QGTFTGNPITAAAAIAAIDTIL-E--DDVCAKINDLGQFAREAMNHLFARKG 349 (453)
T ss_dssp SSCEEEEECHHHHTTSSSCC-----------CCCCHHHHHHHHHHHHHHH-H--TTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cceEEEechHHHHHHhccccCCCce-e-CCCCCCCHHHHHHHHHHHHHHh-h--hhHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3489999998766655441001000 0 01124566677777778876 5 3 456677777777877777651 23
Q ss_pred CeEEeCCCCCcccceEEEEEcc-----c------------c---chHHHhcc--cCeEecccCccCCCCCChhHHHHHcC
Q 040741 339 GVVVNGSMERRYIGNLNLSFAY-----V------------E---GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALG 396 (457)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~-----~------------~---~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g 396 (457)
...... ..+.++.+.+.. . + ..++...+ +||.+.++
T Consensus 350 ~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~------------------ 407 (453)
T 2cy8_A 350 LNWLAY----GRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGR------------------ 407 (453)
T ss_dssp CCEEEE----CCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTT------------------
T ss_pred CcEEEE----EeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCC------------------
Confidence 222111 114455566652 1 1 23444444 57766321
Q ss_pred CCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhH
Q 040741 397 VDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLY 440 (457)
Q Consensus 397 ~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~ 440 (457)
+.+|+ +..++++|+++++++|++++++++....+|
T Consensus 408 -------~~~~l--~~~~t~~~i~~~l~~l~~~l~~~~~~~~~~ 442 (453)
T 2cy8_A 408 -------GSVFL--SAQHEREHVEHLVTTFDRVLDRLADENLLS 442 (453)
T ss_dssp -------TEEEC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred -------CCEEe--eccCCHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 23554 467899999999999999999887654443
No 221
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.90 E-value=6.7e-23 Score=205.53 Aligned_cols=324 Identities=11% Similarity=0.054 Sum_probs=206.2
Q ss_pred CCCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741 55 AGRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT 128 (457)
Q Consensus 55 ~~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T 128 (457)
..+.-|||+.++. ..+|++.+++.+.+.....+ ++ ..+...++++.++++++ ++++++|++|||
T Consensus 50 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~--------~~-~~~~~~~l~~~la~~~~-~~~~v~~~~~Gs 119 (429)
T 3k28_A 50 IDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSF--------GA-PTEIENKLAKLVIERVP-SIEIVRMVNSGT 119 (429)
T ss_dssp TTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCC--------SS-CCHHHHHHHHHHHHHST-TCSEEEEESSHH
T ss_pred CCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCc--------CC-CCHHHHHHHHHHHHhCC-CCCEEEEeCChH
Confidence 3455799987754 25899999999998763211 11 12567788999999987 567899999999
Q ss_pred HHHHHHHHHhhhhhcCCCCEEEEcCCCCc-chHHHHHHHH----------hcC------cEEEEEeCCCCCCCCHHHHHH
Q 040741 129 ESNNVSIKGVMHFYKDKKRHVITTQTEHK-CVLDSCRHLQ----------QEG------FEITYLPVGADGIVNLDELRA 191 (457)
Q Consensus 129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~-~~~~~~~~~~----------~~G------~~v~~v~~~~~~~~d~~~le~ 191 (457)
+|++.+++.+..+ .++++|++..+.|. ....+..... ..+ .++..++.+ |++++++
T Consensus 120 ea~~~ai~~a~~~--~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~ 192 (429)
T 3k28_A 120 EATMSALRLARGY--TGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN-----DLESVKY 192 (429)
T ss_dssp HHHHHHHHHHHHH--HTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETT-----CHHHHHH
T ss_pred HHHHHHHHHHHHh--hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCC-----CHHHHHH
Confidence 9999999987632 25667777555544 3322211100 000 123333333 8999999
Q ss_pred hcC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCC--c--ccCCCCcccEEEecccccc
Q 040741 192 AIR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKI--P--VDVEKWNVSLMSLSGHKIY 260 (457)
Q Consensus 192 ~i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~--~--~~~~~~~~Di~~~s~~K~~ 260 (457)
+++ +++++|+++.+++++|.+.| +++|.++|++||+++|+|++|..... . .+.....+|+++ ++|.+
T Consensus 193 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t--~sK~~ 270 (429)
T 3k28_A 193 AFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTC--LGKVI 270 (429)
T ss_dssp HHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEEE--ECGGG
T ss_pred HHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCceeh--hhhhh
Confidence 886 46788999999888999988 99999999999999999999962110 0 111122357665 55955
Q ss_pred C-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---
Q 040741 261 G-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK--- 336 (457)
Q Consensus 261 g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~--- 336 (457)
| +.++|+++++++.++.+.+..... . ....+.++..+++..++++... ++..++++++.+++++.|.+.
T Consensus 271 ~~G~~iG~~~~~~~~~~~~~~~~~~~---~-~~t~~~~~~a~aaa~aal~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 343 (429)
T 3k28_A 271 GGGLPVGAYGGKAEIMRQVAPSGPIY---Q-AGTLSGNPLAMAAGYETLVQLT---PESYVEFERKAEMLEAGLRKAAEK 343 (429)
T ss_dssp GTTSCCEEEEECHHHHTTBTTTSSBC---C-CCTTTTCHHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEcHHHHhhhccCCCcc---c-cCCCCCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 335899999887666554321000 0 0112456666666666766543 566677777777777776651
Q ss_pred CCCeEEeCCCCCcccceEEEEEcccc--------------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741 337 LDGVVVNGSMERRYIGNLNLSFAYVE--------------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDED 400 (457)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~ 400 (457)
++.+.... ..+.++.+.+.... ...+...+ +||.+.++.
T Consensus 344 ~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------------------- 398 (429)
T 3k28_A 344 HGIPHHIN----RAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQ--------------------- 398 (429)
T ss_dssp TTCCCEEE----EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST---------------------
T ss_pred CCCCEEEE----eeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCC---------------------
Confidence 23221111 12444444442211 13344444 688776542
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 401 MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 401 ~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
.+.+|++ ..++++|+++++++|+++++++
T Consensus 399 --~~~~r~~--~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 399 --FEGLFLS--TVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp --TSCBCCC--TTCCHHHHHHHHHHHHHHHHTC
T ss_pred --CCCEEEE--CCCCHHHHHHHHHHHHHHHHHH
Confidence 1567775 4678999999999999998754
No 222
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.89 E-value=1e-21 Score=199.11 Aligned_cols=332 Identities=14% Similarity=0.111 Sum_probs=207.3
Q ss_pred CCCcEEecCCCC------CCCCHHHHHHHHHHHhhc-cCCCCCCccchhh-hHHHHHHHHHHHHHHHhCCCCCcEEEeCC
Q 040741 55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSR-YGNPHSRTHLFGW-ESEVAVETARSQIADLIGASPKEIIFTSG 126 (457)
Q Consensus 55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~-~~~~~~~~~~~~la~~~g~~~~~i~~t~g 126 (457)
..+.-|||+.+. +..+|++.+|+.+.+... ..+.. .++. ...+..+++.+.++++++...++++|++|
T Consensus 60 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~s 135 (472)
T 1ohv_A 60 VDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRP----ALGILPPENFVEKLRESLLSVAPKGMSQLITMAC 135 (472)
T ss_dssp TTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCC----CTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESS
T ss_pred CCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccc----ccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCC
Confidence 345568888553 346899999999976432 11111 1111 11234445555566666555678999999
Q ss_pred hHHHHHHHHHHhhhhhc----C-----------------CC---CEEEEcCCC-CcchHHHHHHHH-----hcCcEE---
Q 040741 127 ATESNNVSIKGVMHFYK----D-----------------KK---RHVITTQTE-HKCVLDSCRHLQ-----QEGFEI--- 173 (457)
Q Consensus 127 ~T~a~~~al~~~~~~~~----~-----------------~g---~~vi~~~~~-h~~~~~~~~~~~-----~~G~~v--- 173 (457)
||+|++.+++.+..++. . +| +.||+.+.. |.....+..... ..|..+
T Consensus 136 GseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~ 215 (472)
T 1ohv_A 136 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDW 215 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCC
T ss_pred chhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCC
Confidence 99999999998764421 1 23 777776655 444444433321 112211
Q ss_pred EEEeCCCC-C-------------CCCHHHHHHhcCC------CceEEEEeccccccccccC----hHHHHHHHHhcCCcE
Q 040741 174 TYLPVGAD-G-------------IVNLDELRAAIRP------DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPF 229 (457)
Q Consensus 174 ~~v~~~~~-~-------------~~d~~~le~~i~~------~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~l 229 (457)
..++.+.. . ..|+++|+++|++ ++++|++++++|++|.+.| +++|.++|++||+++
T Consensus 216 ~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~ll 295 (472)
T 1ohv_A 216 PIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAF 295 (472)
T ss_dssp CEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEE
T ss_pred cccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 12232210 0 1268899999976 7899999999999999887 999999999999999
Q ss_pred EEehhhh-cCCCc--ccCCCCc----ccEEEeccccc-cCCCCceEEEEecCCCccccccccCCccccccccCCCChhHH
Q 040741 230 HTDAAQA-LGKIP--VDVEKWN----VSLMSLSGHKI-YGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLI 301 (457)
Q Consensus 230 i~D~a~~-~g~~~--~~~~~~~----~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 301 (457)
|+|++|+ +|... +....++ +|++++ +|. +| | |+++ +++. ....+...+ .....++..+
T Consensus 296 i~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~--sK~~l~--G-G~~~-~~~~-~~~~~~~~~-------~T~~~~~~~~ 361 (472)
T 1ohv_A 296 LVDEVQTGGGSTGKFWAHEHWGLDDPADVMTF--SKKMMT--G-GFFH-KEEF-RPNAPYRIF-------NTWLGDPSKN 361 (472)
T ss_dssp EEECTTTTTTTTSSSSGGGGGCCSSCCSEEEE--CGGGSS--E-EEEE-CGGG-SCSSSSSSC-------CSSSSCHHHH
T ss_pred EEeCcccCCCCCCCchhccccCCCCCCCEEEE--cccccc--C-CccC-chhh-ccccccccc-------CccCccHHHH
Confidence 9999998 44332 2333333 787755 497 44 3 6665 4432 212221111 1113467777
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCC-eEEeCCCCCcccceEEEEEccc-cchHHHhcc--cCeE
Q 040741 302 VGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDG-VVVNGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVA 374 (457)
Q Consensus 302 ~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~ 374 (457)
+++.++++.+.+ +.+.++.+++.+++++.|.+. +++ +.... ..+.++.+.+... ....+...| +||.
T Consensus 362 aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~----~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~ 435 (472)
T 1ohv_A 362 LLLAEVINIIKR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVR----GRGTFCSFDTPDESIRNKLISIARNKGVM 435 (472)
T ss_dssp HHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEE----EETTEEEEECSSHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeec----CCceEEEEEeCChhHHHHHHHHHHHCCeE
Confidence 777788887765 456777888888888877651 242 32111 1134444444321 133455555 5877
Q ss_pred ecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 375 VSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 375 ~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
+.++. .+.|||+++..+|++||++++++|+++++++
T Consensus 436 ~~~~g-----------------------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 436 LGGCG-----------------------DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp CEEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 76531 2799999999999999999999999988653
No 223
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.89 E-value=2.2e-22 Score=207.05 Aligned_cols=343 Identities=13% Similarity=0.012 Sum_probs=210.1
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHH-HHHHHHHHhC--C---CCCcEEEeCChHHHHH
Q 040741 59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVET-ARSQIADLIG--A---SPKEIIFTSGATESNN 132 (457)
Q Consensus 59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~la~~~g--~---~~~~i~~t~g~T~a~~ 132 (457)
+.|..+.+...++.+.+++.+.... .++|.. .|.. +..+. ++..+.+..+ . +++++++|+|+++++.
T Consensus 107 i~l~~g~~~~~~~~~~~al~~~~~~-~~Y~~~----~g~~--~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~ 179 (546)
T 2zy4_A 107 LSYVRDQLGLDPAAFLHEMVDGILG-CNYPVP----PRML--NISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMA 179 (546)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHT-CSCCSS----SSCC--HHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHH
T ss_pred hecccCCCCCCChHHHHHHHHhhhc-CCCCCC----cCCH--HHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHH
Confidence 3443444455557777777776532 222221 0111 22333 2223333332 2 3568999999999999
Q ss_pred HHHHHhh-hhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCCCceEEEEecccccc
Q 040741 133 VSIKGVM-HFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRPDTGLISVMAVNNEI 209 (457)
Q Consensus 133 ~al~~~~-~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~~t~li~i~~~~~~~ 209 (457)
+++.++. ..+.++||.|+++.+.|+.+...+.. ...|.+++.++.+.+ +.+|++++++++++++++|++++++|||
T Consensus 180 ~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPt 258 (546)
T 2zy4_A 180 YIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPEL-AQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPP 258 (546)
T ss_dssp HHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHS-TTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSS
T ss_pred HHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHH-cCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCC
Confidence 9998741 00117899999999999998876543 234788999988643 4689999999998899999999999999
Q ss_pred ccccC---hHHHHHHH--HhcCCcEEEehhhhcCCC-cccCC--CCcccEEEeccccccCCCC--ceEEEEecC-CCccc
Q 040741 210 GVIQP---MEEIGQIC--KEFKIPFHTDAAQALGKI-PVDVE--KWNVSLMSLSGHKIYGPKG--VGALYMRRR-PRIRV 278 (457)
Q Consensus 210 G~~~~---l~~i~~l~--~~~~v~li~D~a~~~g~~-~~~~~--~~~~Di~~~s~~K~~g~~G--~G~l~~~~~-~~~~~ 278 (457)
|.+.+ +++|.++| +++|++||+|++|+.... ...+. ..+.++++.|++|.+|.+| +|+++++++ .++++
T Consensus 259 G~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l 338 (546)
T 2zy4_A 259 SVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLA 338 (546)
T ss_dssp CBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHHH
T ss_pred CccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCHHHHHHH
Confidence 99988 56688888 789999999999984332 11111 1246789999999888666 899999875 44433
Q ss_pred ccc------------ccCCc-----------------cccccccCCCChhHHHHHH--HHHHHHH---HhhHHHHHHHHH
Q 040741 279 EPL------------INGGG-----------------QERGIRSGTLPTPLIVGFG--SACEIAK---KEMDYDHKRITA 324 (457)
Q Consensus 279 ~~~------------~~~~~-----------------~~~~~~~~t~~~~~~~al~--~al~~~~---~~~~~~~~~~~~ 324 (457)
... ...+. ..........+.+...++. ++..++. ...++..+.+++
T Consensus 339 ~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~ 418 (546)
T 2zy4_A 339 LDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRR 418 (546)
T ss_dssp HHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 110 00000 0000111233433333321 1112221 224566666666
Q ss_pred HHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-----------------ccchH-HHhcc--cCeEecccCccCCC
Q 040741 325 LHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-----------------VEGES-LLMGL--KEVAVSSGSACTSA 384 (457)
Q Consensus 325 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~l--~~i~~~~g~~~~~~ 384 (457)
+.+.+.+.|.. ++.+.. + ....++.+.++. .+..+ +...+ +||.+.+|..+..
T Consensus 419 r~~~l~~~L~~---~~~~~~-~--~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~- 491 (546)
T 2zy4_A 419 RETTLYRELGM---PPLRDE-N--AVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGS- 491 (546)
T ss_dssp HHHHHHGGGTS---SCCCCT-T--BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTC-
T ss_pred HHHHHHHhcCC---CcccCC-C--CeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCC-
Confidence 77766666632 122111 1 112333444431 11222 23333 6999999976532
Q ss_pred CCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 385 SLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 385 ~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
..+++||+++. .+++++++++++|+++++++.
T Consensus 492 -----------------~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 492 -----------------NRPSGRASLAN-LNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp -----------------SSCEEEEESSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCeEEEEecc-CCHHHHHHHHHHHHHHHHHHH
Confidence 12789999984 568999999999999988765
No 224
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.89 E-value=4.9e-22 Score=198.37 Aligned_cols=271 Identities=14% Similarity=0.075 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcE-EEeCChHHHHHHHHHHhhhhhcCCCCE
Q 040741 71 PRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEI-IFTSGATESNNVSIKGVMHFYKDKKRH 148 (457)
Q Consensus 71 ~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i-~~t~g~T~a~~~al~~~~~~~~~~g~~ 148 (457)
+++++++.+...... .++. ..+.|+. ...+++++.+++++|.+...+ ++.+|||+|+..++.+++ ++||+
T Consensus 38 ~~vl~A~~~~~~~~~~~~~~-~g~~y~~---~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~----~~Gd~ 109 (431)
T 3ht4_A 38 FRVLESFGKHKISDSHFIPT-TGYGYDD---IGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGIL----RPGDE 109 (431)
T ss_dssp HHHHHHHHHTTCCGGGSCCC-CTTCCSC---HHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTC----CTTCE
T ss_pred HHHHHHHHHhchhhhhcCCC-CCCCCCh---hhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhC----CCCCE
Confidence 467777776532211 1221 1222222 347889999999999875321 114478999999999988 89999
Q ss_pred EEEcC-CCCcchHHHHH-------HHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEec-cccc---cccccChH
Q 040741 149 VITTQ-TEHKCVLDSCR-------HLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMA-VNNE---IGVIQPME 216 (457)
Q Consensus 149 vi~~~-~~h~~~~~~~~-------~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~-~~~~---~G~~~~l~ 216 (457)
|++.. +.|.++...+. .++..|++++.++.+.++.+|++++++++++++++|++++ ++|| +|...+++
T Consensus 110 Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~ 189 (431)
T 3ht4_A 110 LLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIK 189 (431)
T ss_dssp EEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHH
T ss_pred EEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHH
Confidence 99998 89998887663 3345699999999988899999999999999999999996 5555 55666799
Q ss_pred HHHHHHHh--cCCcEEEehhhhcCCCcccCCCCcccEEEecccccc-C---CCCceEEEEecCCCccccccccCCccccc
Q 040741 217 EIGQICKE--FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIY-G---PKGVGALYMRRRPRIRVEPLINGGGQERG 290 (457)
Q Consensus 217 ~i~~l~~~--~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~-g---~~G~G~l~~~~~~~~~~~~~~~~~~~~~~ 290 (457)
+|+++|++ +|+++++|++++.+.........++|++++|++|.+ | +.| |++++++++++++.......+..
T Consensus 190 ~i~~la~~~~~~~~livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~~g-- 266 (431)
T 3ht4_A 190 EMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPGIG-- 266 (431)
T ss_dssp HHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTTTT--
T ss_pred HHHHHHHhhCCCCEEEEeCCChhhccCCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCCcc--
Confidence 99999999 999999999999876544444557899999999953 2 566 99999887766665433211110
Q ss_pred cccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC-cccceEEEEEc
Q 040741 291 IRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER-RYIGNLNLSFA 359 (457)
Q Consensus 291 ~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 359 (457)
...+ ++......+...++ .++.+.++..++++++.+.|++ + ++.+...+.. +...++.+.+.
T Consensus 267 ~~~~-~~~~~~~~~~~~l~----~~~~~~~~~~~~a~~l~~~L~~-~-g~~v~p~~~~~~~~li~~i~l~ 329 (431)
T 3ht4_A 267 AEAG-ASLYSLQEMYQGFF----LAPHVAGQALKGAIFTAAFLEK-L-GMNTSPAWNAPRTDLIQSVQFD 329 (431)
T ss_dssp TSCS-CCCSCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-H-TCCEESCTTSCCSSSCCEEECC
T ss_pred cccC-ccHHHHHHHHhHhh----hHHHHHHHHHHHHHHHHHHHHh-C-cCEecCCCCCCCccEEEEEEeC
Confidence 0111 11111111222222 2356677888899999999988 4 4455433322 23334555554
No 225
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.88 E-value=2.7e-21 Score=201.95 Aligned_cols=322 Identities=11% Similarity=0.025 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741 101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA 180 (457)
Q Consensus 101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~ 180 (457)
..+.++++.+|+++|++. .+++++|+|.|+.+++.+++ ++||+||+++..|.++..++... |+++++++.+.
T Consensus 195 g~i~eaE~~lA~~fGa~~-a~~v~nGts~An~~ai~al~----~pGD~VLv~r~~H~S~~~~l~ls---Ga~pv~v~~~~ 266 (715)
T 3n75_A 195 GPHKEAEQYIARVFNADR-SYMVTNGTSTANKIVGMYSA----PAGSTILIDRNCHKSLTHLMMMS---DVTPIYFRPTR 266 (715)
T ss_dssp THHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHHHS---CCEEEEECCCB
T ss_pred HHHHHHHHHHHHHhCCCC-ceEECcHHHHHHHHHHHHhC----CCCCEEEECCCccHHHHHHHHHc---CCEEEEEeccc
Confidence 357789999999999864 24555555799999999998 89999999999999999987665 99999998753
Q ss_pred C-----CCC-----CHHHHHHhcCC--Cce---EEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCC--cc-
Q 040741 181 D-----GIV-----NLDELRAAIRP--DTG---LISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI--PV- 242 (457)
Q Consensus 181 ~-----~~~-----d~~~le~~i~~--~t~---li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~--~~- 242 (457)
+ +.+ |+++|++++++ +++ +++++++ |++|.+.|+++|.++|++++ +++|+||+.+.. +.
T Consensus 267 ~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~ 343 (715)
T 3n75_A 267 NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIY 343 (715)
T ss_dssp CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGG
T ss_pred cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCcc
Confidence 2 124 89999999973 334 7888888 89999999999999998764 799999985531 11
Q ss_pred -cCC--CC--cccEE---Eecccc-ccCCCCceEEEEecCCCc-cccccccCCccccccccCCCChhHHHHHHHHHHHHH
Q 040741 243 -DVE--KW--NVSLM---SLSGHK-IYGPKGVGALYMRRRPRI-RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK 312 (457)
Q Consensus 243 -~~~--~~--~~Di~---~~s~~K-~~g~~G~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~ 312 (457)
+.. .. ++|++ +.|+|| +.|+.+.|++.++++... ++..... .+.+++++...++++.+|++.+.
T Consensus 344 ~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~------~~~STSpsy~~~AsldaA~~~~~ 417 (715)
T 3n75_A 344 EGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYM------MHTTTSPHYGIVASTETAAAMMK 417 (715)
T ss_dssp TTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHH------HTSCSSCCHHHHHHHHHHHHHHS
T ss_pred ccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHH------hhcCCCchHHHHHHHHHHHHHHH
Confidence 111 11 25765 899999 555666799998875211 1111111 13456889999999999998876
Q ss_pred H-hhHHHHHHHHHHHHHHHHHHhhcCCC------eEEeCCCCCcccceEEEE-------EccccchH-HHhcccCeEec-
Q 040741 313 K-EMDYDHKRITALHDRLLNGIKEKLDG------VVVNGSMERRYIGNLNLS-------FAYVEGES-LLMGLKEVAVS- 376 (457)
Q Consensus 313 ~-~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~l~~i~~~- 376 (457)
. +-.++.++..++++++++.|.+ +++ +.+.++..-.......+. |....... ..+-+ .+.+.
T Consensus 418 ~~~g~~~~~~l~~~a~~~r~~L~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~-Kl~i~~ 495 (715)
T 3n75_A 418 GNAGKRLINGSIERAIKFRKEIKR-LRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPI-KVTLLT 495 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTT-EEEEEC
T ss_pred hhccHHHHHHHHHHHHHHHHHHHH-hhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCe-EEEEEc
Confidence 4 4567889999999999999987 553 566654311001000000 00000000 01111 11111
Q ss_pred ccCccC-----CCC--CChhHHHHHcCCCccC-CCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHH
Q 040741 377 SGSACT-----SAS--LEPSYVLRALGVDEDM-AHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYE 441 (457)
Q Consensus 377 ~g~~~~-----~~~--~~~~~~l~~~g~~~~~-~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~ 441 (457)
+|...+ .+. .+-.-.|+..|+..+. +...|-+-++...+++++++++++|.++-+......|+++
T Consensus 496 ~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~~~~~~~~~ 568 (715)
T 3n75_A 496 PGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAFDLNLRVKN 568 (715)
T ss_dssp SCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTTCBHHH
T ss_pred CCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhhcccchhh
Confidence 111000 000 0111235566776655 4567777788888999999999999988877766666553
No 226
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.87 E-value=6.5e-21 Score=190.74 Aligned_cols=318 Identities=15% Similarity=0.115 Sum_probs=201.9
Q ss_pred CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741 56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129 (457)
Q Consensus 56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~ 129 (457)
.+.-|+|+.++ +..+|++.+++.+.+... ... ++ ..+...++++.++++++ ++++++|++||++
T Consensus 50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~------~~-~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~e 119 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLERG--LTF------GA-PSPLEVALAKKVKRAYP-FVDLVRFVNSGTE 119 (424)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC--SCC------SS-CCHHHHHHHHHHHHHCT-TCCEEEEESSHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhC--CCC------CC-CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHH
Confidence 34457787653 246899999999998752 111 11 12567889999999986 5678999999999
Q ss_pred HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-H----------HhcCc------EEEEEeCCCCCCCCHHHHHHh
Q 040741 130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-L----------QQEGF------EITYLPVGADGIVNLDELRAA 192 (457)
Q Consensus 130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~----------~~~G~------~v~~v~~~~~~~~d~~~le~~ 192 (457)
|+.++++....+ .+++.||+..+.|.+....+.. . ...|. ++..++. .|+++|+++
T Consensus 120 a~~~al~~ar~~--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~ 192 (424)
T 2e7u_A 120 ATMSALRLARGY--TGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-----NDPEGLREV 192 (424)
T ss_dssp HHHHHHHHHHHH--HCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----TCHHHHHHH
T ss_pred HHHHHHHHHHHh--hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----CCHHHHHHH
Confidence 999999863221 2346666666655543322110 0 00132 3444443 289999999
Q ss_pred cC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCCc---c--cCCCCcccEEEecccccc
Q 040741 193 IR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKIP---V--DVEKWNVSLMSLSGHKIY 260 (457)
Q Consensus 193 i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~~---~--~~~~~~~Di~~~s~~K~~ 260 (457)
++ +++++|+++++++++|.+.| +++|.++ ++||+++|+|++|+ |... . +.....+|++ |++|.+
T Consensus 193 l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l 268 (424)
T 2e7u_A 193 LKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFRLAFGGATELLGLKPDLV--TLGKIL 268 (424)
T ss_dssp HHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTTSSTTHHHHHHTCCCSEE--EECGGG
T ss_pred HHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccccchhHHHHHhCCCcchh--hhhhhh
Confidence 86 46778888877777999888 9999999 99999999999998 2211 1 1111236766 667966
Q ss_pred CC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---
Q 040741 261 GP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK--- 336 (457)
Q Consensus 261 g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~--- 336 (457)
|+ -.+|+++++++..+.+.+.... . . ....+.++..++++.++++.+.+ .+...++.+++.+++++.|++.
T Consensus 269 ~~G~~~G~~~~~~~~~~~~~~~~~~--~-~-~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~ 343 (424)
T 2e7u_A 269 GGGLPAAAYAGRREIMEKVAPLGPV--Y-Q-AGTLSGNPLAMAAGLATLELLEE-NPGYYAYLEDLGARLEAGLKEVLKE 343 (424)
T ss_dssp GTTSSCEEEEECHHHHTTBTTTSSB--C-C-CCTTCSCHHHHHHHHHHHHHHHH-CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCcceEEEEEcHHHHhhhcccCCc--c-c-CCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54 2489999998766655441100 0 0 01124566667777778877654 3667778888888888887661
Q ss_pred CCCe-EEeCCCCCcccceEEEEEccc--------------cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741 337 LDGV-VVNGSMERRYIGNLNLSFAYV--------------EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDE 399 (457)
Q Consensus 337 ~~~~-~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~ 399 (457)
++.. .+.+ .+.++.+.+... ....+...+ +||.+.++..
T Consensus 344 ~~~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------------------- 399 (424)
T 2e7u_A 344 KGLPHTVNR-----VGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF------------------- 399 (424)
T ss_dssp TTCCCEEEE-----ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS-------------------
T ss_pred CCCceEEEe-----eceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC-------------------
Confidence 1221 1222 144555555421 122444444 6888776521
Q ss_pred cCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741 400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQ 429 (457)
Q Consensus 400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~ 429 (457)
..+|+ +..++++|+++++++|+++
T Consensus 400 ----~~~~~--~~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 400 ----EAAFL--SVAHREEDVEKTLEALRKA 423 (424)
T ss_dssp ----SCEEC--CTTCCHHHHHHHHHHHHHH
T ss_pred ----CceEe--eccCCHHHHHHHHHHHHHh
Confidence 24554 4568999999999999875
No 227
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.87 E-value=6.5e-21 Score=188.95 Aligned_cols=323 Identities=16% Similarity=0.048 Sum_probs=202.5
Q ss_pred CcEEecCCC------CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CC-----CCC--cEE
Q 040741 57 RPLYLDMQA------TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-GA-----SPK--EII 122 (457)
Q Consensus 57 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~-----~~~--~i~ 122 (457)
+.|.|..+. ..++++.+.+++. ..... +..+ .| .......++++.+++++ +. +++ +++
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~-~~~~----~Y--~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~ 101 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTEN-YKEK----PY--LLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTI 101 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHH-CCCC----CC--CTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEE
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCC-CCCC----CC--CCCCCcHHHHHHHHHHHcCCCCccccccceEEE
Confidence 456666554 2346788888876 33111 1111 11 11123456777777665 21 234 369
Q ss_pred EeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC-C-CCCCCCHHHHHHhcC--CCce
Q 040741 123 FTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV-G-ADGIVNLDELRAAIR--PDTG 198 (457)
Q Consensus 123 ~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~-~-~~~~~d~~~le~~i~--~~t~ 198 (457)
.|+|+++|+.+++..+..+ .+ |.|++..+.|+.+...++.+ |.+++.++. + .++.+|+++++++++ ++++
T Consensus 102 ~t~G~~~al~~~~~~l~~~--~~-d~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 175 (405)
T 3k7y_A 102 QCIGGTGAIFVLLEFLKML--NV-ETLYVTNPPYINHVNMIESR---GFNLKYINFFDYNLIDINYDLFLNDLRNIPNGS 175 (405)
T ss_dssp EEEHHHHHHHHHHHHHHTT--TC-CEEEEESSCCHHHHHHHHTT---TCEEEEECCEETTTTEECHHHHHHHHHHSCSSC
T ss_pred EcCchHHHHHHHHHHHHhc--CC-CEEEEeCCCCHhHHHHHHHc---CCeEEEEeccccccCCcCHHHHHHHHHhCCCCe
Confidence 9999999999999988821 17 99999999999998877666 999999987 3 346799999999986 3567
Q ss_pred EEEEecc-ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc--------c-cC-CCCcccEEEeccccccCCCC
Q 040741 199 LISVMAV-NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP--------V-DV-EKWNVSLMSLSGHKIYGPKG 264 (457)
Q Consensus 199 li~i~~~-~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~--------~-~~-~~~~~Di~~~s~~K~~g~~G 264 (457)
++++..+ |||||.+.+ +++|+++|++|++++++|++|.--... + .+ .....-+++.|++|.||.+|
T Consensus 176 ~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G 255 (405)
T 3k7y_A 176 SVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYG 255 (405)
T ss_dssp EEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTT
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCcc
Confidence 7777654 899999988 667889999999999999998632110 0 00 11123477889999887555
Q ss_pred --ceEEEEe---cCCCccccccccCCccccccccCCCChhHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHH
Q 040741 265 --VGALYMR---RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI------AKKEMDYDHKRITALHDRLLNGI 333 (457)
Q Consensus 265 --~G~l~~~---~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~------~~~~~~~~~~~~~~~~~~l~~~l 333 (457)
+|++++. ++.+.++...+... .......++.....++..++.. ..+++.+.+++++++++.+.+.|
T Consensus 256 lRiG~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L 332 (405)
T 3k7y_A 256 ERAGALHIVCKNQEEKKIVFNNLCFI---VRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKL 332 (405)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHH---HHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeCCHHHHHHHHHHHHHH---HhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8998752 22222222111100 0001113344444444444432 23346777788999999999999
Q ss_pred h----hcCCC---eEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCC
Q 040741 334 K----EKLDG---VVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHT 404 (457)
Q Consensus 334 ~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~ 404 (457)
+ + +.. +.+..+. +++ ++++. .+. +.+..| .||.+.+| +
T Consensus 333 ~~~~~~-~g~~~~~~~~~p~----gg~-f~~~~-l~~-~~~~~L~~~gV~v~p~-------------------------~ 379 (405)
T 3k7y_A 333 ETYQKK-YNLNYDWNVYKKQ----RGL-FSFVP-LLA-KIAEHLKTHHIYIINN-------------------------G 379 (405)
T ss_dssp HHHGGG-GTCCCCGGGGSSC----CSS-EEECG-GGG-GGTTTTTTTTEECCTT-------------------------S
T ss_pred Hhhhhh-cCCCCCCccccCC----ceE-EEecC-CCH-HHHHHHHHCCEeecCC-------------------------C
Confidence 8 6 421 2333221 222 22222 222 223333 47766543 2
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 405 SIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 405 ~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
||+++.. ++++|++++++|++++++
T Consensus 380 --Ris~a~~-~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 380 --RINVSGI-TKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp --EEEGGGC-CTTHHHHHHHHHHHHHHC
T ss_pred --eEEEecc-CHHHHHHHHHHHHHHHhh
Confidence 8998753 468999999999998864
No 228
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.87 E-value=8.6e-21 Score=187.17 Aligned_cols=316 Identities=14% Similarity=0.092 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCc-EEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC
Q 040741 100 EVAVETARSQIADLIGASPKE-IIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV 178 (457)
Q Consensus 100 ~~~~~~~~~~la~~~g~~~~~-i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~ 178 (457)
....+.+..++.+++|.+... .++++|+|.+.++++.+.+.....+++.||+++..|.|+..++..+ |+.+++++.
T Consensus 97 ~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~---Gl~p~~v~~ 173 (450)
T 3bc8_A 97 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA---GFEPVVIEN 173 (450)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHc---CCeeEEEEe
Confidence 356667889999999997543 6999999855555555554322234789999999999999999888 999999876
Q ss_pred ---CCCCCCCHHHHHHhcCC----CceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-C--C--C
Q 040741 179 ---GADGIVNLDELRAAIRP----DTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-V--E--K 246 (457)
Q Consensus 179 ---~~~~~~d~~~le~~i~~----~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-~--~--~ 246 (457)
+..+.+|++.|+++|++ .+.+|+....++.+|.+.|+++|+++|++||+++|+|+||+.-..... + . .
T Consensus 174 ~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~ 253 (450)
T 3bc8_A 174 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGAR 253 (450)
T ss_dssp EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHH
T ss_pred eecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhc
Confidence 45578999999999964 344555555544466899999999999999999999999986432211 1 1 1
Q ss_pred -CcccEEEecccc-ccCCCCceEEEEecC-CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHH
Q 040741 247 -WNVSLMSLSGHK-IYGPKGVGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRIT 323 (457)
Q Consensus 247 -~~~Di~~~s~~K-~~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~ 323 (457)
.++|+++.|.|| ++.+.|++++.++++ .+.++...+.+. . +.++ .+-.+..-+.+..+++.+..++..
T Consensus 254 ~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g~------~--s~Sp-sL~l~~~l~~~G~~g~~~~i~~~~ 324 (450)
T 3bc8_A 254 VGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR------A--SASP-SLDVLITLLSLGCSGYRKLLKERK 324 (450)
T ss_dssp HSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSC------B--CSHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhhcC------C--cccH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 268999999999 567888888888643 222222222111 1 1121 122121122334456778888888
Q ss_pred HHHHHHHHHHhhcCC---CeEEeCCCCCcccceEEEEEcc------ccchHHHhcc-----cCeEecc-cCccCCCCCCh
Q 040741 324 ALHDRLLNGIKEKLD---GVVVNGSMERRYIGNLNLSFAY------VEGESLLMGL-----KEVAVSS-GSACTSASLEP 388 (457)
Q Consensus 324 ~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l-----~~i~~~~-g~~~~~~~~~~ 388 (457)
++++++++.|.+ ++ +..+.+.+.. +.-..+.+.. .+...+.-.+ .|.-+.+ |.. ....
T Consensus 325 ~~a~~l~~~l~~-~~~~~g~~~l~~~~~--~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~---~~~~- 397 (450)
T 3bc8_A 325 EMFVYLSTQLKK-LAEAHNERLLQTPHN--PISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNV---QTVS- 397 (450)
T ss_dssp HHHHHHHHHHHH-HHHHTTCCBCCCTTC--SSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCE---EEET-
T ss_pred HHHHHHHHHHHh-hHHhcCceecCCccC--CCcceeecccccccccCCCceeEEEecCCCCccceeeecccc---cchh-
Confidence 999999999987 67 7777664322 1112232321 1223333222 2333220 000 0000
Q ss_pred hHHHHHcCCCcc-CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 389 SYVLRALGVDED-MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 389 ~~~l~~~g~~~~-~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
...++.+|+..+ .....|-+.++...+++|+++++++|++..++++
T Consensus 398 ~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~ 444 (450)
T 3bc8_A 398 GHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVR 444 (450)
T ss_dssp TEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 001123344333 2457888999999999999999999999987664
No 229
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.86 E-value=1.2e-19 Score=175.78 Aligned_cols=334 Identities=14% Similarity=0.201 Sum_probs=215.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHH-HHHHHHHHhCCCCCc----EEEeCChHHHHHHHH
Q 040741 63 MQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVET-ARSQIADLIGASPKE----IIFTSGATESNNVSI 135 (457)
Q Consensus 63 ~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~----i~~t~g~T~a~~~al 135 (457)
.++-+.+++.|++++...+.+.| |.|..+ |..|....+.++. +.++..++||++..+ +. ..||+.||..++
T Consensus 60 IASEN~~S~aV~~a~gS~ltnKYaEGyPg~R-yYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQ-P~SGs~AN~avy 137 (490)
T 3ou5_A 60 IASENFCSRAALEALGSCLNNKYSEGYPGKR-YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQ-PYSGSPANLAVY 137 (490)
T ss_dssp CTTCCCCCHHHHHHHTSGGGTCCCCC-----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECC-CSSHHHHHHHHH
T ss_pred ecCCCcCCHHHHHHhcCcccccccCCCCCcc-ccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCC-cCCHHHHHHHHH
Confidence 45666899999999999999877 567653 3335555455555 678889999998763 33 345888999999
Q ss_pred HHhhhhhcCCCCEEEEcCCCCcchHHHHH-----HHHhcC--cEEEEEeCC-CCCCCCHHHHHHhcC-CCceEEEEeccc
Q 040741 136 KGVMHFYKDKKRHVITTQTEHKCVLDSCR-----HLQQEG--FEITYLPVG-ADGIVNLDELRAAIR-PDTGLISVMAVN 206 (457)
Q Consensus 136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-----~~~~~G--~~v~~v~~~-~~~~~d~~~le~~i~-~~t~li~i~~~~ 206 (457)
.+++ +|||.|+..+..|.+.+.... .....| +++...+++ .++.+|.+++++... .++++|++....
T Consensus 138 ~All----~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~Sa 213 (490)
T 3ou5_A 138 TALL----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA 213 (490)
T ss_dssp HHHC----C-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSS
T ss_pred HHHc----CCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCcc
Confidence 9999 999999998888776654321 110112 344445555 568899999999775 578899886544
Q ss_pred cccccccChHHHHHHHHhcCCcEEEehhhhcC-----CCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCC-----
Q 040741 207 NEIGVIQPMEEIGQICKEFKIPFHTDAAQALG-----KIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPR----- 275 (457)
Q Consensus 207 ~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g-----~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~----- 275 (457)
+-...|++++++||++.|.++++|.||-.| ..+-.+ + .+|++++|.|| +.||+| |+|+.+++..
T Consensus 214 --Y~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~-~-~ADvVTtTTHKTLrGPrG-G~Il~~~~~~~~~~k 288 (490)
T 3ou5_A 214 --YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF-K-HADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPK 288 (490)
T ss_dssp --CCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG-G-TCSEEEEESSSTTCSCSC-EEEEEECSEEEECC-
T ss_pred --CccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcc-c-cceEEeccccccccCCCc-eEEEecccccccccc
Confidence 346688999999999999999999999643 333333 2 38999999999 789997 9999887421
Q ss_pred ----------ccccccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeC
Q 040741 276 ----------IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNG 344 (457)
Q Consensus 276 ----------~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 344 (457)
+++.....-+ ..|.|-...+++...++..... ++....+++.++++.|.+.|.+ .|+.++.
T Consensus 289 ~~~~~~~~~~kkin~aVFPg------~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~--~G~~vvs 360 (490)
T 3ou5_A 289 TGREIPYTFEDRINFAVFPS------LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSLVS 360 (490)
T ss_dssp -CCEEECCCHHHHHHHHTTT------TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGG
T ss_pred ccchhHHHHHHHHHhhcCcc------ccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh--CCCeeec
Confidence 1111111111 1234555677777777776554 6889999999999999999999 6898885
Q ss_pred CCCCcccceEEEEEc--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC----CCCH
Q 040741 345 SMERRYIGNLNLSFA--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR----FTTE 416 (457)
Q Consensus 345 ~~~~~~~~~~~~~~~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~----~~t~ 416 (457)
.... ...+.+.+. +.++......| .||.+........ ......+.|||+... ...+
T Consensus 361 GgTd--nHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D--------------~sp~~~SGiRiGTpa~TtRG~~e 424 (490)
T 3ou5_A 361 GGTD--NHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD--------------RSAITPGGLRLGAPALTSRQFRE 424 (490)
T ss_dssp GSCS--SSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTC--------------CCSSSCSEEEEESHHHHHTTCCH
T ss_pred CCCC--ceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCC--------------CCCCCCCeeEECCHHHHhCCCCH
Confidence 4332 334444443 44555565555 4665543211100 112234789999654 3468
Q ss_pred HHHHHHHHHHHHHHH
Q 040741 417 AEVDRAIELTVKQVE 431 (457)
Q Consensus 417 edid~~~~~l~~~~~ 431 (457)
+|++++.+.|.++++
T Consensus 425 ~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 425 DDFRRVVDFIDEGVN 439 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988875
No 230
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=188.09 Aligned_cols=309 Identities=15% Similarity=0.090 Sum_probs=202.9
Q ss_pred HHHHHHHHhCCCCC-cEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC---CC
Q 040741 106 ARSQIADLIGASPK-EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG---AD 181 (457)
Q Consensus 106 ~~~~la~~~g~~~~-~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~---~~ 181 (457)
+.++|+++ |.+.. ..++++|+|.++..++.+.+......++.||+++..|.|+..++..+ |+++++++.. ..
T Consensus 122 ~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~---Gl~Pv~V~p~~d~~~ 197 (501)
T 3hl2_A 122 VLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITA---GFEPVVIENVLEGDE 197 (501)
T ss_dssp HHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEEECEEEETTE
T ss_pred HHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHc---CCeEEEEeeeecccc
Confidence 45566666 88653 58999999978777777776311012499999999999999999888 9999999873 34
Q ss_pred CCCCHHHHHHhcCCC---ceEEEEecc-ccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcc-----cCCCCc-ccE
Q 040741 182 GIVNLDELRAAIRPD---TGLISVMAV-NNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV-----DVEKWN-VSL 251 (457)
Q Consensus 182 ~~~d~~~le~~i~~~---t~li~i~~~-~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~-----~~~~~~-~Di 251 (457)
..+|+++++++|++. ..++++..+ ++..|.+.|+++|+++|++||+++++|+||+.-.... ..-..+ +|+
T Consensus 198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~ 277 (501)
T 3hl2_A 198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA 277 (501)
T ss_dssp EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCE
T ss_pred cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcE
Confidence 678999999999753 233333333 3334567899999999999999999999998643211 111235 999
Q ss_pred EEecccc-ccCCCCceEEEEecC-CCccccccccCCccccccccCCCChhHHH-HHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741 252 MSLSGHK-IYGPKGVGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIV-GFGSACEIAKKEMDYDHKRITALHDR 328 (457)
Q Consensus 252 ~~~s~~K-~~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-al~~al~~~~~~~~~~~~~~~~~~~~ 328 (457)
++.|.|| ++.|.|.|+++.+++ .++++...+. |+.+....+ .+...+.+..+++.++.++..+++++
T Consensus 278 vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~yP----------Gr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~ 347 (501)
T 3hl2_A 278 FVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYP----------GRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSY 347 (501)
T ss_dssp EEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTSC----------SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccceeecCceEEEeCCHHHHHHHHHhCC----------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 677877566666653 3333333232 233333333 44445566677899999999999999
Q ss_pred HHHHHhhcCCC---eEEeCCCCCcccceEEEEEccccc------hHHHhcc-----cCeEe-cccCccCCCCCChhHHHH
Q 040741 329 LLNGIKEKLDG---VVVNGSMERRYIGNLNLSFAYVEG------ESLLMGL-----KEVAV-SSGSACTSASLEPSYVLR 393 (457)
Q Consensus 329 l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l-----~~i~~-~~g~~~~~~~~~~~~~l~ 393 (457)
+++.|++ +.. -++...+ ..+.-+.+.+..... ..+-..| .|--+ .+|..- .-..+.++
T Consensus 348 L~~~L~~-la~~~ge~ll~~~--~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~----~i~g~~f~ 420 (501)
T 3hl2_A 348 LSNQIKK-LSEAYNERLLHTP--HNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQ----TVSGYTFR 420 (501)
T ss_dssp HHHHHHH-HHHTTTCCBCCCT--TCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCE----EETTEEES
T ss_pred HHHHHHH-HHHhcChhhcCCC--CCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCce----EECCeeec
Confidence 9999988 433 2333222 235555566653321 2233333 22222 222200 00011122
Q ss_pred HcCCC-ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741 394 ALGVD-EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435 (457)
Q Consensus 394 ~~g~~-~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~ 435 (457)
.+|-. ..+...++-++....++++|||.++++|++++.++++
T Consensus 421 ~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 421 GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp STTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33332 2345689999999999999999999999999988754
No 231
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.85 E-value=1.1e-20 Score=187.41 Aligned_cols=329 Identities=13% Similarity=0.045 Sum_probs=210.2
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CC--CCCc--EEEeCChHHHHHH
Q 040741 59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-GA--SPKE--IIFTSGATESNNV 133 (457)
Q Consensus 59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~--~~~~--i~~t~g~T~a~~~ 133 (457)
+|.|..+.+++.+.|.+|......... .+.... .....++++.+++++ |- +.+. .+-|.|||.|+..
T Consensus 53 ~y~d~~g~~~vl~~Vk~A~~~~~~~~~--~~~Y~p------~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~ 124 (420)
T 4h51_A 53 AYRDEQGRPYPLRVVRKAEQLLLDMNL--DYEYLP------ISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSL 124 (420)
T ss_dssp CCBCTTSCBCCCHHHHHHHHHHHHTTC--CCCCCC------TTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHhcCCC--CCCCCC------cCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHH
Confidence 566666777888999999877765421 111111 234567777777765 32 2222 4558999999999
Q ss_pred HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcE-EEEEeC--CCCCCCCHHHHHHhc---CCCceEEEEecccc
Q 040741 134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE-ITYLPV--GADGIVNLDELRAAI---RPDTGLISVMAVNN 207 (457)
Q Consensus 134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~-v~~v~~--~~~~~~d~~~le~~i---~~~t~li~i~~~~~ 207 (457)
++..+...+.++||.|+++++.|+++...++.+ |.+ |...+. +.+..+|.+.+++.+ .+++++++...+||
T Consensus 125 a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~a---G~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~N 201 (420)
T 4h51_A 125 GAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAA---GWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHN 201 (420)
T ss_dssp HHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHT---TCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCT
T ss_pred HHHHHHHhcCCCCCEEEEecCCchhHHHHHHHc---CCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCC
Confidence 988887766689999999999999998887776 876 433332 234567887777665 46788899999999
Q ss_pred ccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC-cc--c-------CCCCcccEEEeccccccCCCC--ceEEEEec
Q 040741 208 EIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI-PV--D-------VEKWNVSLMSLSGHKIYGPKG--VGALYMRR 272 (457)
Q Consensus 208 ~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~-~~--~-------~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~ 272 (457)
|||...+ +++|+++|++++++++.|++|..-.. .. + ......-+++.|++|.||..| +|++++..
T Consensus 202 PtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~ 281 (420)
T 4h51_A 202 PTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLL 281 (420)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecc
Confidence 9999987 77899999999999999999853211 10 0 011123467889999777655 99999887
Q ss_pred CCCccccccccCCccccccccCCCChhHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHHhhcCC--C-eEEe
Q 040741 273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE------IAKKEMDYDHKRITALHDRLLNGIKEKLD--G-VVVN 343 (457)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~-~~~~ 343 (457)
+..+........-....+.....++......+...+. ..+++++.+.++++++++.+.+.|++ +. + +..+
T Consensus 282 ~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~-~g~~~~~~~i 360 (420)
T 4h51_A 282 KDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLR-LQTPGSWEHV 360 (420)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSCCTHH
T ss_pred cCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCee
Confidence 6544332211100000011122444444443333332 12345778888999999999999988 31 1 1111
Q ss_pred CCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHH
Q 040741 344 GSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDR 421 (457)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~ 421 (457)
.++ .++ |.+.+.+.+++ +.| ++|.+.+| + ||++.. .+.++|++
T Consensus 361 ~~q----~Gm--F~~~gls~e~v-~~L~e~~Vy~~~~-------------------------g--Ris~Ag-l~~~ni~~ 405 (420)
T 4h51_A 361 INQ----IGM--FSFLGLSKAQC-EYCQNHNIFITVS-------------------------G--RANMAG-LTHETALM 405 (420)
T ss_dssp HHC----CSS--EEECCCCHHHH-HHHHHTTEECCTT-------------------------C--EEEGGG-CCHHHHHH
T ss_pred cCC----Cce--EEecCcCHHHH-HHHHhCCEEEcCC-------------------------C--EEEecc-CCHHHHHH
Confidence 111 222 33444544433 334 46665432 2 899875 46899999
Q ss_pred HHHHHHHHHHHHH
Q 040741 422 AIELTVKQVEKLR 434 (457)
Q Consensus 422 ~~~~l~~~~~~~~ 434 (457)
++++|.++++++.
T Consensus 406 ~a~aI~~vvr~i~ 418 (420)
T 4h51_A 406 LAQTINDAVRNVN 418 (420)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 232
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.84 E-value=1e-19 Score=181.32 Aligned_cols=326 Identities=16% Similarity=0.170 Sum_probs=203.7
Q ss_pred CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741 55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT 128 (457)
Q Consensus 55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T 128 (457)
..+.-|+|+.+. +..+|++.+|+.+.+..... ....+ ....++.+.|+++++. .+.+.|++|||
T Consensus 84 ~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~--~~~~~-------~~~~~lae~l~~~~p~-~~~v~f~~SGs 153 (454)
T 4ao9_A 84 ADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGIN--LTGHN-------LLEGRLARLICERFPQ-IEQLRFTNSGT 153 (454)
T ss_dssp TTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSC--CCSEE-------SSHHHHHHHHHHHSTT-CSEEEEESSHH
T ss_pred CCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCC--ccCCc-------HHHHHHHHHHHHhCCC-CCEEEEeCchH
Confidence 455568887543 24689999999999875321 11111 2345678888888863 45699999999
Q ss_pred HHHHHHHHHhhhhhcCCCCEEEEcCC-CCcchHHHHHHHHhc--CcEEEEEeCCCCCCCCHHHHHHhcC---CCceEEEE
Q 040741 129 ESNNVSIKGVMHFYKDKKRHVITTQT-EHKCVLDSCRHLQQE--GFEITYLPVGADGIVNLDELRAAIR---PDTGLISV 202 (457)
Q Consensus 129 ~a~~~al~~~~~~~~~~g~~vi~~~~-~h~~~~~~~~~~~~~--G~~v~~v~~~~~~~~d~~~le~~i~---~~t~li~i 202 (457)
+|++.|++..+.+. .+++|+.... .|............. ......+|.+ |++.+++.++ ++...|++
T Consensus 154 EA~e~AiklAr~~t--gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~~~iAavIv 226 (454)
T 4ao9_A 154 EANLMALTAALHFT--GRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHGPEIAVVLV 226 (454)
T ss_dssp HHHHHHHHHHHHHH--TCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTGGGEEEEEE
T ss_pred HHHHHHHHHHHhcc--cCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcCCceEEEEe
Confidence 99999999877653 3455655444 454332211000001 1233444433 8899988885 45789999
Q ss_pred eccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCCcc----cCCCCcccEEEecccc-ccCCCCceEEEEecC
Q 040741 203 MAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKIPV----DVEKWNVSLMSLSGHK-IYGPKGVGALYMRRR 273 (457)
Q Consensus 203 ~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~~~----~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~ 273 (457)
+.+....|.+.| +++|.++|++||+++|+|+++. |.... ......+|+++++ | +.|...+|++.++++
T Consensus 227 EPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~e 303 (454)
T 4ao9_A 227 EPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRAD 303 (454)
T ss_dssp CSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHH
T ss_pred ccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHHH
Confidence 999999999988 9999999999999999999997 32211 1112247998777 9 444445899999987
Q ss_pred CCccccccccCCccccccccC--CCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCC-eEEeCCCC
Q 040741 274 PRIRVEPLINGGGQERGIRSG--TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDG-VVVNGSME 347 (457)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-~~~~~~~~ 347 (457)
..+.+.+..... ...+ ..++..+++..++++.+++ +...++.+++.++|++.|++. .+- ..+.+
T Consensus 304 i~~~~~~~~~~~-----~h~~T~~gnPla~AAala~L~~l~~--~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg--- 373 (454)
T 4ao9_A 304 VMALFDPRTGPL-----AHSGTFNNNVMTMAAGYAGLTKLFT--PEAAGALAERGEALRARLNALCANEGVAMQFTG--- 373 (454)
T ss_dssp HHGGGCTTTCSC-----CCCCTTTTCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEE---
T ss_pred HHHHHhhccCCc-----cccCCCCCCHHHHHHHHHHHHHHhc--cChhHHHHHHHHHHHHHHHHHHhhCCCCEEEee---
Confidence 666554422110 1112 3456667777777877654 455666666667776666541 221 12222
Q ss_pred CcccceEEEEEcccc----------chH----HHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecC
Q 040741 348 RRYIGNLNLSFAYVE----------GES----LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIG 411 (457)
Q Consensus 348 ~~~~~~~~~~~~~~~----------~~~----~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~ 411 (457)
.+.++.+.|...+ ... +...+ +||.+.+. +. +.++
T Consensus 374 --~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~-------------------------~~--~~~s 424 (454)
T 4ao9_A 374 --IGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPR-------------------------GF--VVLS 424 (454)
T ss_dssp --ETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTT-------------------------CE--EECC
T ss_pred --eceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCC-------------------------CC--EEEe
Confidence 2444444442110 011 11112 46655422 23 3345
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcChh
Q 040741 412 RFTTEAEVDRAIELTVKQVEKLREMSPL 439 (457)
Q Consensus 412 ~~~t~edid~~~~~l~~~~~~~~~~~~~ 439 (457)
..+|++|||++++++++++++++...|.
T Consensus 425 ~~~T~~dId~~l~al~~~l~~~~a~lPr 452 (454)
T 4ao9_A 425 LPLTDADIDRYVAAIGSFIGGHGALLPR 452 (454)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHSGGGSCB
T ss_pred CCCCHHHHHHHHHHHHHHHHhccccCCC
Confidence 5579999999999999999999888774
No 233
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.83 E-value=1.3e-17 Score=166.77 Aligned_cols=337 Identities=15% Similarity=0.117 Sum_probs=208.2
Q ss_pred CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCh
Q 040741 55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGA 127 (457)
Q Consensus 55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~ 127 (457)
..+.-|||+.+. +..+|++.+|+.+.+....-. . .+. ...+...++.++|.+++..+ .+.++|++||
T Consensus 61 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~-~----~~~-~~~~~~~~lae~L~~~~p~~~~~~v~f~~sG 134 (456)
T 4atq_A 61 VDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHT-C----FMV-TPYEGYVAVTEQLNRLTPGDHAKRTVLFNSG 134 (456)
T ss_dssp TTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCC-T----TTT-SCCHHHHHHHHHHHHHSSCSSCEEEEEESSH
T ss_pred CCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCc-c----cCc-cCcHHHHHHHHHHHHhCCCCCCcEEEEeCCh
Confidence 455568887442 357899999999988764211 0 001 11145567778888988754 4469999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCEEEEcCC-CCcchHHHHHHHHh-----c-----CcEEEEEeCCC------CCCCCHHHHH
Q 040741 128 TESNNVSIKGVMHFYKDKKRHVITTQT-EHKCVLDSCRHLQQ-----E-----GFEITYLPVGA------DGIVNLDELR 190 (457)
Q Consensus 128 T~a~~~al~~~~~~~~~~g~~vi~~~~-~h~~~~~~~~~~~~-----~-----G~~v~~v~~~~------~~~~d~~~le 190 (457)
|+|++.|++....+ ..+.+|+.... .|.....+...... . ...+..+|... ....+.+.++
T Consensus 135 sEA~e~AlklAr~~--t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 212 (456)
T 4atq_A 135 AEAVENAVKVARLA--TGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAK 212 (456)
T ss_dssp HHHHHHHHHHHHHH--HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHH
T ss_pred HHHHHHHHHHHhhh--hcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHH
Confidence 99999999977654 34556665554 55555444332210 0 12345555431 1112233333
Q ss_pred Hh-------cC-CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc-CCC--cccCC--CCcccEEE
Q 040741 191 AA-------IR-PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL-GKI--PVDVE--KWNVSLMS 253 (457)
Q Consensus 191 ~~-------i~-~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~--~~~~~--~~~~Di~~ 253 (457)
+. +. ++...|+++.+....|.+.| +++|.++|++||+++|+|+++.. |.. .+... ...+|+++
T Consensus 213 ~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt 292 (456)
T 4atq_A 213 RAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIIT 292 (456)
T ss_dssp HHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEE
T ss_pred HHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhh
Confidence 32 22 35788999999998898876 99999999999999999999874 322 12222 22479998
Q ss_pred ecccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 040741 254 LSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNG 332 (457)
Q Consensus 254 ~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~ 332 (457)
++ | +.|...+|+++++++..+.+.+...++. ...++..+++..+.++.+++ +.+.++.+++.+++.+.
T Consensus 293 ~g--K~lggg~P~~av~~~~~i~~~~~~~~~~~T-------f~gnpla~aaala~L~~i~~--~~l~~~~~~~g~~l~~~ 361 (456)
T 4atq_A 293 MA--KGIAGGLPLSAITGRADLLDAVHPGGLGGT-------YGGNPVACAAALAAIDTMEQ--HDLNGRARHIEELALGK 361 (456)
T ss_dssp EC--GGGGTTSSCEEEEEEHHHHTTSCTTSSCCS-------SSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHH
T ss_pred hh--hcccCcCCceeeEecHHHHhcccccCCCCC-------CCCChHHHHhhHHHHHHHhh--ccHHHHHHHHHHHHHHH
Confidence 87 8 4444458999999877666655443321 24567777777788888876 34555666666666655
Q ss_pred Hhhc---CCC--eEEeCCCCCcccceEEEEEcccc----c----hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741 333 IKEK---LDG--VVVNGSMERRYIGNLNLSFAYVE----G----ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV 397 (457)
Q Consensus 333 l~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~ 397 (457)
|++. ++. ..++++ ....+.++.+.+.... . ..+...+ +|+.+.+..
T Consensus 362 L~~l~~~~~~~~~~~v~~-VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g------------------ 422 (456)
T 4atq_A 362 LRELAAELSAGGGSVVGD-IRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCG------------------ 422 (456)
T ss_dssp HHHHHHHCC-----CEEE-EEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEEC------------------
T ss_pred HHHHHHhcccccCCceEE-eeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecC------------------
Confidence 5441 221 111111 1122445555553211 1 1233333 577664321
Q ss_pred CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741 398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432 (457)
Q Consensus 398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~ 432 (457)
...+.|||.++..+|++|||+++++|+++++.
T Consensus 423 ---~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 423 ---TYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp ---TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 11278999999999999999999999999874
No 234
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.72 E-value=4e-22 Score=200.09 Aligned_cols=327 Identities=12% Similarity=0.062 Sum_probs=204.6
Q ss_pred CcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741 57 RPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATES 130 (457)
Q Consensus 57 ~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a 130 (457)
+.-|+|+.+.. ..+|++.+++.+.+..... + + ...+...++++.|+++++ ..+.++|++|||+|
T Consensus 99 G~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~------~--~-~~~~~~~~Lae~L~~~~p-~~~~v~~~nSGseA 168 (465)
T 2yky_A 99 GHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLN------L--S-TQTENEALFAEAVCDRFP-SIDLVRFTNSGTEA 168 (465)
Confidence 34477765533 2479999999998765211 0 1 123677889999999995 34569999999999
Q ss_pred HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH--HhcCc--EEEEEeCCCCCCCCHHHHHHhcC---CCceEEEEe
Q 040741 131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL--QQEGF--EITYLPVGADGIVNLDELRAAIR---PDTGLISVM 203 (457)
Q Consensus 131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~--~~~G~--~v~~v~~~~~~~~d~~~le~~i~---~~t~li~i~ 203 (457)
+..+++.+..+ ..+++||+....|.+...... . ...|+ .+..++. .|+++|+++++ +++++|+++
T Consensus 169 ~~~Aik~ar~~--tgr~~ii~~~~~yHG~~~~~~-sg~~~~g~~~~~~~~~~-----~d~~~l~~~l~~~~~~~aavi~e 240 (465)
T 2yky_A 169 NLMALATATAI--TGRKTVLAFDGGYHGGLLNFA-SGHAPTNAPYHVVLGVY-----NDVEGTADLLKRHGHDCAAILVE 240 (465)
Confidence 99999976432 345777776665544333222 1 11233 2233332 38899999998 678899999
Q ss_pred ccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCCc--ccCCCC--cccEEEeccccccCC-CCceEEEEecCC
Q 040741 204 AVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKIP--VDVEKW--NVSLMSLSGHKIYGP-KGVGALYMRRRP 274 (457)
Q Consensus 204 ~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~~--~~~~~~--~~Di~~~s~~K~~g~-~G~G~l~~~~~~ 274 (457)
.+++++|.+.| +++|.++|++||+++|+|++++ +... .....+ .+|++ +++|.+|+ -.+|+++++++.
T Consensus 241 pv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i 317 (465)
T 2yky_A 241 PMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDL 317 (465)
Confidence 88888998877 9999999999999999999999 5221 111222 35665 56796654 238999999887
Q ss_pred CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741 275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL 354 (457)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 354 (457)
.+.+.+...+... . ......++..+++..++++.+++ +...++.+++.+++++.|.+......+... ....+.++
T Consensus 318 ~~~l~~~~~g~~~-~-~~T~~~npla~aAa~aaL~~l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~g~G~~~ 392 (465)
T 2yky_A 318 MERFDPARDGAFA-H-AGTFNNNILTMSAGHAALTQIYT--RQAASDLSASGDRFRANLNRIAVENQAPLQ-FTGLGSLG 392 (465)
Confidence 7776652111000 0 01113455666666677877765 456777788888888877762111222111 11224444
Q ss_pred EEEEcc--c---------c---chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741 355 NLSFAY--V---------E---GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE 418 (457)
Q Consensus 355 ~~~~~~--~---------~---~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed 418 (457)
.+.+.. + + ...+...+ +||.+.++.+ .. ++..++++|
T Consensus 393 ~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~-----------------------~~----~s~~~t~ed 445 (465)
T 2yky_A 393 TIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGM-----------------------YA----LSLEIADAG 445 (465)
Confidence 444432 0 0 11233333 4555543310 11 445678999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 040741 419 VDRAIELTVKQVEKLREM 436 (457)
Q Consensus 419 id~~~~~l~~~~~~~~~~ 436 (457)
||++++++++++++++++
T Consensus 446 id~~l~~l~~~l~~~~~~ 463 (465)
T 2yky_A 446 RDAFAEALADFIGEQRAL 463 (465)
Confidence 999999999999887654
No 235
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.81 E-value=1.6e-17 Score=166.78 Aligned_cols=341 Identities=17% Similarity=0.127 Sum_probs=209.7
Q ss_pred CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741 55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT 128 (457)
Q Consensus 55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T 128 (457)
..+.-|||+.+. +...|++.+|+.+.+.+...... .++.. .+...++.++|.++++.+.+.++|++|||
T Consensus 64 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~----~~~~~-~~~~~~lAe~L~~~~p~~~~~v~f~~sGs 138 (473)
T 4e3q_A 64 VNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHA----FFGRM-SDQTVMLSEKLVEVSPFDSGRVFYTNSGS 138 (473)
T ss_dssp TTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCC----CTTEE-EHHHHHHHHHHHHHSSCSSCEEEEESSHH
T ss_pred CCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccc----ccccc-CHHHHHHHHHHHhhCCCCccEEEEeCchH
Confidence 355568887543 35679999999999886431100 11111 14556788889999887667799999999
Q ss_pred HHHHHHHHHhhhhhcCC----CCEEEEcC-CCCcchHHHHHHHH-----hcC---cEEEEEeCC------CCCCC-----
Q 040741 129 ESNNVSIKGVMHFYKDK----KRHVITTQ-TEHKCVLDSCRHLQ-----QEG---FEITYLPVG------ADGIV----- 184 (457)
Q Consensus 129 ~a~~~al~~~~~~~~~~----g~~vi~~~-~~h~~~~~~~~~~~-----~~G---~~v~~v~~~------~~~~~----- 184 (457)
+|++.|++....++..+ +.+||... ..|.....+..... ..+ .....++.+ ..+..
T Consensus 139 EA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 218 (473)
T 4e3q_A 139 EANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFV 218 (473)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHH
Confidence 99999999876553322 34566554 45555554433221 001 123334332 11111
Q ss_pred --CHHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc-CCC--ccc--CCCCcc
Q 040741 185 --NLDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL-GKI--PVD--VEKWNV 249 (457)
Q Consensus 185 --d~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~--~~~--~~~~~~ 249 (457)
..+++++.|. ++.+.|+++.+....|.+.| +++|.++|++||+++|.|+++.. |.. .+. .....+
T Consensus 219 ~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~P 298 (473)
T 4e3q_A 219 ARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTP 298 (473)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCC
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCC
Confidence 1234455442 45688999999998898876 89999999999999999999974 322 111 112348
Q ss_pred cEEEecccc-ccCC-CCceEEEEecCCCccccccccCC-ccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741 250 SLMSLSGHK-IYGP-KGVGALYMRRRPRIRVEPLINGG-GQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH 326 (457)
Q Consensus 250 Di~~~s~~K-~~g~-~G~G~l~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~ 326 (457)
|+++++ | +.|. ..+|+++++++..+.+....... ....+.. .+.++..+++..++++.+++ +...++.+++.
T Consensus 299 Di~t~~--K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T-~~Gnpla~Aaala~L~~i~~--~~l~~~~~~~g 373 (473)
T 4e3q_A 299 DAIISS--KNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFT-ASGHPVGCAIALKAIDVVMN--EGLAENVRRLA 373 (473)
T ss_dssp SEEEEC--GGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCT-TTTCHHHHHHHHHHHHHHHH--SSHHHHHHHHH
T ss_pred ChHHhc--ccccCCCCCcccccccHHHHHHhccccccccccccCCC-CCCCcchhhhhhhhhhhhcc--ccHHHHHHHHH
Confidence 999877 9 4332 45899999987665543321100 0000111 14566777777788888876 45566666777
Q ss_pred HHHHHHHhhc--CCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCCCCCChhH
Q 040741 327 DRLLNGIKEK--LDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTSASLEPSY 390 (457)
Q Consensus 327 ~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~ 390 (457)
+++++.|++. .+.+.-+ ...+.++.+.+.... ...+...+ +|+.+.+.
T Consensus 374 ~~l~~~L~~l~~~~~v~~v----RG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~------------ 437 (473)
T 4e3q_A 374 PRFEERLKHIAERPNIGEY----RGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL------------ 437 (473)
T ss_dssp HHHHHHHHHHTTSTTEEEE----EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE------------
T ss_pred HHHHHHHHHHhcCCCeeEE----eecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec------------
Confidence 7777776651 2443211 112344444442110 11233332 46655432
Q ss_pred HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741 391 VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433 (457)
Q Consensus 391 ~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~ 433 (457)
++.|||.++..+|++|||+++++++++++++
T Consensus 438 ------------g~~i~l~PPL~it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 438 ------------GQSVVLCPPFILTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp ------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2689999999999999999999999999876
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.70 E-value=1.1e-15 Score=163.44 Aligned_cols=337 Identities=13% Similarity=0.061 Sum_probs=201.0
Q ss_pred EEecCCC------CCCC-CHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHH
Q 040741 59 LYLDMQA------TTPV-DPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATES 130 (457)
Q Consensus 59 i~l~~~~------~~~~-~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a 130 (457)
-|||+.+ .+.. .|++.+|+.+.+.+.. ... ..+. ..+...++.++|+++++.+ .+.++|++||++|
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~-h~~----~~~~-~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA 454 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFG-HVM----FPEN-VYEPALKCAELLLDGVGKGWASRVYFSDNGSTA 454 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHS-SCC----CTTE-ECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhcc-ccc----cccc-CCHHHHHHHHHHHHhCCCCCCCEEEECCChhHH
Confidence 4788754 2245 8999999999987642 111 0011 1256668999999998754 3569999999999
Q ss_pred HHHHHHHhh-hhhcCC------------CCEEEE-cCCCCcchHHHHHHHHhc------------CcEE-----------
Q 040741 131 NNVSIKGVM-HFYKDK------------KRHVIT-TQTEHKCVLDSCRHLQQE------------GFEI----------- 173 (457)
Q Consensus 131 ~~~al~~~~-~~~~~~------------g~~vi~-~~~~h~~~~~~~~~~~~~------------G~~v----------- 173 (457)
++.|++... .+.... +.+||. ...+|.....++...... +..+
T Consensus 455 ~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 534 (831)
T 4a0g_A 455 IEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSN 534 (831)
T ss_dssp HHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEET
T ss_pred HHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccC
Confidence 999999773 333222 335554 555677777665543110 1111
Q ss_pred --EEEeCCCCC---------CCC------------------HHHHHHhcC--------CCceEEEEecc-ccccccccC-
Q 040741 174 --TYLPVGADG---------IVN------------------LDELRAAIR--------PDTGLISVMAV-NNEIGVIQP- 214 (457)
Q Consensus 174 --~~v~~~~~~---------~~d------------------~~~le~~i~--------~~t~li~i~~~-~~~~G~~~~- 214 (457)
..++.+... .-| .++|++.|+ ++++.|+++.+ ++..|.+.+
T Consensus 535 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~ 614 (831)
T 4a0g_A 535 GSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVD 614 (831)
T ss_dssp TEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEEC
T ss_pred CceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCC
Confidence 112222100 011 256788775 34678999996 888888875
Q ss_pred ---hHHHHHHHHhcCCcEEEehhhh-cCCC--cccCC--CCcccEEEeccccccCC--CCceEEEEecCCCccccccccC
Q 040741 215 ---MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVE--KWNVSLMSLSGHKIYGP--KGVGALYMRRRPRIRVEPLING 284 (457)
Q Consensus 215 ---l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~--~~~~Di~~~s~~K~~g~--~G~G~l~~~~~~~~~~~~~~~~ 284 (457)
+++|.++|++||+++|+|+++. +|.. .+... ...+|+++++ |.+|. ..+|+++++++..+.+.+....
T Consensus 615 ~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiitls--K~L~gG~~Plgav~~~~~i~~~~~~~~~~ 692 (831)
T 4a0g_A 615 PLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFA--KLLTGGMVPLAVTLATDAVFDSFSGDSKL 692 (831)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEEEC--GGGGTTSSCCEEEEECHHHHHTTCSSCGG
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEEEe--cccccCccCcEEEEECHHHHHHHhccccc
Confidence 9999999999999999999886 3322 11111 2247887655 95432 2479999998765554332100
Q ss_pred CccccccccCCCChhHHHHHHHHHHHHHHh-h-HHHHHHHHHH----HHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE
Q 040741 285 GGQERGIRSGTLPTPLIVGFGSACEIAKKE-M-DYDHKRITAL----HDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF 358 (457)
Q Consensus 285 ~~~~~~~~~~t~~~~~~~al~~al~~~~~~-~-~~~~~~~~~~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (457)
.....+. ..+.++..+++..++++.++++ + ++..+..+.+ .+.+.+.+.+ .+.+.-+. ..+.++.+.+
T Consensus 693 ~~~~hg~-T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~-~~~v~~vr----g~Gl~~~iel 766 (831)
T 4a0g_A 693 KALLHGH-SYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISS-HSAVQRVV----VIGTLFALEL 766 (831)
T ss_dssp GSCCCCC-TTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHH-STTEEEEE----EETTEEEEEE
T ss_pred ccceeec-CCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCceeEe----ecccEEEEEE
Confidence 0000011 1255677777788888887652 1 1111111111 2234455666 56553321 1134444444
Q ss_pred ccc---------cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741 359 AYV---------EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV 427 (457)
Q Consensus 359 ~~~---------~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~ 427 (457)
... ....+...+ +|+.+.+. ++.|||+++..+|++|||+++++|+
T Consensus 767 ~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~------------------------g~~lrl~pp~~~t~e~id~~~~~l~ 822 (831)
T 4a0g_A 767 KADASNSGYASLYAKSLLIMLREDGIFTRPL------------------------GNVIYLMCGPCTSPEICRRLLTKLY 822 (831)
T ss_dssp C---------CHHHHHHHHHHHHTTEECCCB------------------------TTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ecCccccccchHHHHHHHHHHHHCCcEEEec------------------------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 211 112344444 57776543 1799999999999999999999999
Q ss_pred HHHHHH
Q 040741 428 KQVEKL 433 (457)
Q Consensus 428 ~~~~~~ 433 (457)
++++++
T Consensus 823 ~~l~~l 828 (831)
T 4a0g_A 823 KRLGEF 828 (831)
T ss_dssp HHHTTT
T ss_pred HHHHHh
Confidence 988654
No 237
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=56.43 E-value=19 Score=30.79 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=33.0
Q ss_pred HhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEE
Q 040741 191 AAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHT 231 (457)
Q Consensus 191 ~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~ 231 (457)
++-.-.+..++++-..|+.|.....+++.+++++||+.++.
T Consensus 154 rLAGl~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 154 TLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp HHTTSCSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred HHcCCCceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 33344677777777767889999999999999999998874
No 238
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=54.30 E-value=11 Score=31.94 Aligned_cols=51 Identities=10% Similarity=0.182 Sum_probs=40.2
Q ss_pred CHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcC--CcEEEehhhhcCCC
Q 040741 185 NLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK--IPFHTDAAQALGKI 240 (457)
Q Consensus 185 d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~--v~li~D~a~~~g~~ 240 (457)
|+++|+++++.....+++- .|.+..++++.+.+|+++ +++|.|-..+++.-
T Consensus 18 ~~~~l~~al~s~~~~ifll-----~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~Gls~d 70 (192)
T 3kts_A 18 NQKDMEKILELDLTYMVML-----ETHVAQLKALVKYAQAGGKKVLLHADLVNGLKND 70 (192)
T ss_dssp SSHHHHHHTTSSCCEEEEC-----SEETTTHHHHHHHHHHTTCEEEEEGGGEETCCCS
T ss_pred CHHHHHHHHcCCCCEEEEe-----cCcHHHHHHHHHHHHHcCCeEEEecCchhccCCc
Confidence 7899999998776666664 467789999999999985 66778887776543
No 239
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=52.52 E-value=1.1e+02 Score=27.89 Aligned_cols=99 Identities=9% Similarity=0.092 Sum_probs=53.5
Q ss_pred cEEEeCC-hHHHHHHHHHHhhhhhcCCCCEEEEcCCC--CcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC--
Q 040741 120 EIIFTSG-ATESNNVSIKGVMHFYKDKKRHVITTQTE--HKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR-- 194 (457)
Q Consensus 120 ~i~~t~g-~T~a~~~al~~~~~~~~~~g~~vi~~~~~--h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~-- 194 (457)
.+++|++ |.-+-.+ +..+.. ...+.+++.+.. .+........+...|+++...+.. |.++++++++
T Consensus 12 ~IlVtGatG~iG~~l-~~~L~~---~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~-----d~~~l~~~~~~~ 82 (346)
T 3i6i_A 12 RVLIAGATGFIGQFV-ATASLD---AHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLIN-----EQEAMEKILKEH 82 (346)
T ss_dssp CEEEECTTSHHHHHH-HHHHHH---TTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTT-----CHHHHHHHHHHT
T ss_pred eEEEECCCcHHHHHH-HHHHHH---CCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecC-----CHHHHHHHHhhC
Confidence 3666665 4444443 333442 323334444433 222222233334457777666655 7888998887
Q ss_pred CCceEEEEeccccccccccChHHHHHHHHhcC-CcEEE
Q 040741 195 PDTGLISVMAVNNEIGVIQPMEEIGQICKEFK-IPFHT 231 (457)
Q Consensus 195 ~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~-v~li~ 231 (457)
.-..+|......|. .....+.+.|++.+ +..++
T Consensus 83 ~~d~Vi~~a~~~n~----~~~~~l~~aa~~~g~v~~~v 116 (346)
T 3i6i_A 83 EIDIVVSTVGGESI----LDQIALVKAMKAVGTIKRFL 116 (346)
T ss_dssp TCCEEEECCCGGGG----GGHHHHHHHHHHHCCCSEEE
T ss_pred CCCEEEECCchhhH----HHHHHHHHHHHHcCCceEEe
Confidence 43444444433332 23468889999988 76655
No 240
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=50.88 E-value=92 Score=26.74 Aligned_cols=116 Identities=15% Similarity=0.104 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhCCCCC---cEEEeCChHHHHHHHHHHhhhhhcC------CCCEEEEcC---CCCcch-HHHHHHHHh
Q 040741 102 AVETARSQIADLIGASPK---EIIFTSGATESNNVSIKGVMHFYKD------KKRHVITTQ---TEHKCV-LDSCRHLQQ 168 (457)
Q Consensus 102 ~~~~~~~~la~~~g~~~~---~i~~t~g~T~a~~~al~~~~~~~~~------~g~~vi~~~---~~h~~~-~~~~~~~~~ 168 (457)
.+...-+.+.++++...= +..+ ++..+..++..+.+.... .+.+|++.. ..|.-= ......++.
T Consensus 42 ~l~p~m~~VG~lw~~g~i~v~q~~~---aa~~~~~~l~~l~~~l~~~~~~~~~~~~vll~~v~gd~HdiG~~iv~~~l~~ 118 (215)
T 3ezx_A 42 GLSVGMKIVGDKFEAAEIFLPQIMM---SGKAMSNAMEVLTPELEKNKKEGEEAGLAITFVAEGDIHDIGHRLVTTMLGA 118 (215)
T ss_dssp THHHHHHHHHHHHHTTSSCHHHHHH---HHHHHHHHHHHHHHHHTSSCCC---CCEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHH---HHHHHHHHHHHHHHHhhhcccCCCCCCeEEEEeCCCChhHHHHHHHHHHHHH
Confidence 344456666666664320 1222 444555555444333222 123454432 223222 223345577
Q ss_pred cCcEEEEEeCCCCCCCCHHHHHH-hcCCCceEEEE--eccccccccccChHHHHHHHHhcC
Q 040741 169 EGFEITYLPVGADGIVNLDELRA-AIRPDTGLISV--MAVNNEIGVIQPMEEIGQICKEFK 226 (457)
Q Consensus 169 ~G~~v~~v~~~~~~~~d~~~le~-~i~~~t~li~i--~~~~~~~G~~~~l~~i~~l~~~~~ 226 (457)
.|++|+++..+ +.++++.+ +.+.++.+|.+ +... +.....++++.+..++.+
T Consensus 119 ~G~~Vi~LG~~----vp~e~iv~~~~~~~~d~v~l~~S~l~--~~~~~~~~~~i~~l~~~~ 173 (215)
T 3ezx_A 119 NGFQIVDLGVD----VLNENVVEEAAKHKGEKVLLVGSALM--TTSMLGQKDLMDRLNEEK 173 (215)
T ss_dssp TSCEEEECCSS----CCHHHHHHHHHHTTTSCEEEEEECSS--HHHHTHHHHHHHHHHHTT
T ss_pred CCCeEEEcCCC----CCHHHHHHHHHHcCCCEEEEEchhcc--cCcHHHHHHHHHHHHHcC
Confidence 89999998765 46777744 44567778888 5543 344555888888887764
No 241
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=48.26 E-value=1.1e+02 Score=26.99 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=43.4
Q ss_pred HhCCCCCcEEEeCChHHHHHHHHH-HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHH
Q 040741 113 LIGASPKEIIFTSGATESNNVSIK-GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRA 191 (457)
Q Consensus 113 ~~g~~~~~i~~t~g~T~a~~~al~-~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~ 191 (457)
+|.++-. +.+.+||+.++=.++. .+. +.|-+|++....-.........+...|.++..+.+|-. |.+++++
T Consensus 4 ~f~L~gK-valVTGas~GIG~aia~~la----~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~---~~~~v~~ 75 (255)
T 4g81_D 4 LFDLTGK-TALVTGSARGLGFAYAEGLA----AAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVT---DELAIEA 75 (255)
T ss_dssp TTCCTTC-EEEETTCSSHHHHHHHHHHH----HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTT---CHHHHHH
T ss_pred CcCCCCC-EEEEeCCCcHHHHHHHHHHH----HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC---CHHHHHH
Confidence 4555433 4555555556555444 344 67888887665544444555555666888888776633 5666665
Q ss_pred hcC
Q 040741 192 AIR 194 (457)
Q Consensus 192 ~i~ 194 (457)
+++
T Consensus 76 ~~~ 78 (255)
T 4g81_D 76 AFS 78 (255)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 242
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=44.57 E-value=1.2e+02 Score=27.15 Aligned_cols=59 Identities=19% Similarity=0.069 Sum_probs=34.1
Q ss_pred hcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcC-CcEEE
Q 040741 168 QEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK-IPFHT 231 (457)
Q Consensus 168 ~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~-v~li~ 231 (457)
..|++++..+.. |.++++++++.-..+|...........+.....+.+.|++.+ +.-++
T Consensus 54 ~~~~~~~~~D~~-----d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v 113 (313)
T 1qyd_A 54 QLGAKLIEASLD-----DHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL 113 (313)
T ss_dssp TTTCEEECCCSS-----CHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred hCCeEEEeCCCC-----CHHHHHHHHhCCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence 346665554444 788999988754444444333211112334567888899887 65444
No 243
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=42.81 E-value=32 Score=21.59 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=24.8
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 404 TSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 404 ~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
.++||++..- ++.+.+++...|.+++.++.
T Consensus 2 ervrisitar-tkkeaekfaailikvfaelg 31 (62)
T 2gjh_A 2 ERVRISITAR-TKKEAEKFAAILIKVFAELG 31 (62)
T ss_dssp CEEEEEEECS-SHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEec-chhHHHHHHHHHHHHHHHhC
Confidence 3689998875 57889999999999998874
No 244
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=39.65 E-value=2.2e+02 Score=26.00 Aligned_cols=103 Identities=15% Similarity=0.114 Sum_probs=55.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcC--CCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC
Q 040741 118 PKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQ--TEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP 195 (457)
Q Consensus 118 ~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~--~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~ 195 (457)
+...++|.+.+......+..... .++.-+|++.+ |.+.+... +..+...|+.+++++-+ .+-..+..
T Consensus 121 ~g~~ILTh~~S~tv~~~l~~A~~--~gk~~~V~v~EsrP~~qG~~l-a~~L~~~gI~vtli~Ds--------a~~~~m~~ 189 (315)
T 3ecs_A 121 DGATILTHAYSRVVLRVLEAAVA--AKKRFSVYVTESQPDLSGKKM-AKALCHLNVPVTVVLDA--------AVGYIMEK 189 (315)
T ss_dssp TTEEEEECSCCHHHHHHHHHHHT--TTCCEEEEEECCTTTTHHHHH-HHHHHTTTCCEEEECGG--------GHHHHGGG
T ss_pred CCCEEEEcCCcHHHHHHHHHHHH--cCCeEEEEEecCCCcchHHHH-HHHHHHcCCCEEEEehh--------HHHHHHHh
Confidence 34588887766655555554331 13345676654 33334433 44556779999998633 12222331
Q ss_pred -CceEEEEeccccccccccC-h--HHHHHHHHhcCCcEEEe
Q 040741 196 -DTGLISVMAVNNEIGVIQP-M--EEIGQICKEFKIPFHTD 232 (457)
Q Consensus 196 -~t~li~i~~~~~~~G~~~~-l--~~i~~l~~~~~v~li~D 232 (457)
+..++-...+. ..|.+.+ + -.++-+|+.+++++++=
T Consensus 190 vd~VivGAd~i~-~nG~v~nkiGT~~iAl~Ak~~~vP~~V~ 229 (315)
T 3ecs_A 190 ADLVIVGAEGVV-ENGGIINKIGTNQMAVCAKAQNKPFYVV 229 (315)
T ss_dssp CSEEEEECSEEC-TTSCEEEETTHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECceEEe-cCCCeeehhhhHHHHHHHHHhCCCEEEE
Confidence 22233333332 3344433 3 45788899999999873
No 245
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=39.09 E-value=1.4e+02 Score=24.30 Aligned_cols=54 Identities=22% Similarity=0.205 Sum_probs=32.7
Q ss_pred CcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEE
Q 040741 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH 230 (457)
Q Consensus 170 G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li 230 (457)
|..+..++.+.. .+......++++..+|+++. .|....+-++++.++++|+.++
T Consensus 65 g~~~~~~~~~~~---~~~~~~~~~~~~d~~i~iS~----sG~t~~~~~~~~~ak~~g~~vi 118 (187)
T 3sho_A 65 GIRTTVLTEGGS---TLTITLANLRPTDLMIGVSV----WRYLRDTVAALAGAAERGVPTM 118 (187)
T ss_dssp TCCEEEECCCTH---HHHHHHHTCCTTEEEEEECC----SSCCHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEecCCch---hHHHHHhcCCCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCCEE
Confidence 666666542211 12222345566766666654 5766777888899999876554
No 246
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=38.26 E-value=1.6e+02 Score=26.41 Aligned_cols=96 Identities=18% Similarity=0.127 Sum_probs=49.8
Q ss_pred EEEeCC-hHHHHHHHHHHhhhhhcCCCCEE-EEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCce
Q 040741 121 IIFTSG-ATESNNVSIKGVMHFYKDKKRHV-ITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTG 198 (457)
Q Consensus 121 i~~t~g-~T~a~~~al~~~~~~~~~~g~~v-i~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~ 198 (457)
+++|.+ |.-+-.+ +..+. +.|..| ++.+... ........+...|++++..+.. |.++++++++.-..
T Consensus 14 ilVtGatG~iG~~l-~~~L~----~~g~~V~~l~R~~~-~~~~~~~~l~~~~v~~v~~Dl~-----d~~~l~~a~~~~d~ 82 (318)
T 2r6j_A 14 ILIFGGTGYIGNHM-VKGSL----KLGHPTYVFTRPNS-SKTTLLDEFQSLGAIIVKGELD-----EHEKLVELMKKVDV 82 (318)
T ss_dssp EEEETTTSTTHHHH-HHHHH----HTTCCEEEEECTTC-SCHHHHHHHHHTTCEEEECCTT-----CHHHHHHHHTTCSE
T ss_pred EEEECCCchHHHHH-HHHHH----HCCCcEEEEECCCC-chhhHHHHhhcCCCEEEEecCC-----CHHHHHHHHcCCCE
Confidence 666653 4444433 33344 344444 4444332 1111122223447777666554 78899998875444
Q ss_pred EEEEeccccccccccChHHHHHHHHhcC-CcEEE
Q 040741 199 LISVMAVNNEIGVIQPMEEIGQICKEFK-IPFHT 231 (457)
Q Consensus 199 li~i~~~~~~~G~~~~l~~i~~l~~~~~-v~li~ 231 (457)
+|...... .+.-...+.+.|++.+ +.-++
T Consensus 83 vi~~a~~~----~~~~~~~l~~aa~~~g~v~~~v 112 (318)
T 2r6j_A 83 VISALAFP----QILDQFKILEAIKVAGNIKRFL 112 (318)
T ss_dssp EEECCCGG----GSTTHHHHHHHHHHHCCCCEEE
T ss_pred EEECCchh----hhHHHHHHHHHHHhcCCCCEEE
Confidence 44333221 1334567888888887 65444
No 247
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=37.36 E-value=61 Score=26.42 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=38.8
Q ss_pred HHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc-CCCceEEEEeccccccccccChHHHHHHHHhc
Q 040741 163 CRHLQQEGFEITYLPVGADGIVNLDELRAAI-RPDTGLISVMAVNNEIGVIQPMEEIGQICKEF 225 (457)
Q Consensus 163 ~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i-~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~ 225 (457)
...++..|++|+++..+ +.++++.+++ ..++.+|.++... +.....++++.+.+++.
T Consensus 39 a~~l~~~G~eVi~lG~~----~p~e~lv~aa~~~~~diV~lS~~~--~~~~~~~~~~i~~L~~~ 96 (161)
T 2yxb_A 39 ARALRDAGFEVVYTGLR----QTPEQVAMAAVQEDVDVIGVSILN--GAHLHLMKRLMAKLREL 96 (161)
T ss_dssp HHHHHHTTCEEECCCSB----CCHHHHHHHHHHTTCSEEEEEESS--SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCEEEECCCC----CCHHHHHHHHHhcCCCEEEEEeec--hhhHHHHHHHHHHHHhc
Confidence 33457789999988755 4677776655 4677788877653 34455577887777764
No 248
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=37.11 E-value=1e+02 Score=25.47 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=27.9
Q ss_pred HHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEE
Q 040741 189 LRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH 230 (457)
Q Consensus 189 le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li 230 (457)
+...++++..+|+++. +|....+-+.++.+|+.|+.++
T Consensus 103 ~~~~~~~~DvvI~iS~----SG~t~~~i~~~~~ak~~g~~vI 140 (196)
T 2yva_A 103 VRALGHAGDVLLAIST----RGNSRDIVKAVEAAVTRDMTIV 140 (196)
T ss_dssp HHHHCCTTCEEEEECS----SSCCHHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCEEE
Confidence 3456777777777754 5777777888899999987554
No 249
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=37.03 E-value=1.3e+02 Score=25.52 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=43.6
Q ss_pred HHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC-CCceEEEEeccccccccccChHHHHHHHHhcC----CcEEEehh
Q 040741 163 CRHLQQEGFEITYLPVGADGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQPMEEIGQICKEFK----IPFHTDAA 234 (457)
Q Consensus 163 ~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~----v~li~D~a 234 (457)
...++..|++++++..+ +.++++.+++. .++.+|+++...+ .....++++.+.+++.+ +.+++=++
T Consensus 109 a~~l~~~G~~v~~LG~~----vp~~~l~~~~~~~~~d~v~lS~~~~--~~~~~~~~~i~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 109 AMMLESGGFTVYNLGVD----IEPGKFVEAVKKYQPDIVGMSALLT--TTMMNMKSTIDALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHHHHTTCEEEECCSS----BCHHHHHHHHHHHCCSEEEEECCSG--GGTHHHHHHHHHHHHTTCGGGCEEEEEST
T ss_pred HHHHHHCCCEEEECCCC----CCHHHHHHHHHHcCCCEEEEecccc--ccHHHHHHHHHHHHhcCCCCCCeEEEECC
Confidence 34557789999998764 56777776664 5677888876532 34455777777777654 55555443
No 250
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=35.02 E-value=62 Score=28.11 Aligned_cols=37 Identities=5% Similarity=-0.007 Sum_probs=29.7
Q ss_pred CCCceEEEEeccccccccccChHHHHHHHHhcCCcEEE
Q 040741 194 RPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHT 231 (457)
Q Consensus 194 ~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~ 231 (457)
.-.+..++++-. +.-|.....+++.++|++||+.++.
T Consensus 176 Gl~Pa~VicEi~-~ddG~mar~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 176 NLVPITTICEMM-GDDGNAMSKNETKRYAEKHNLIYLS 212 (227)
T ss_dssp TSCSEEEEEEEB-CTTSSBCCHHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEe-CCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 345666666665 5679999999999999999998874
No 251
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=34.28 E-value=68 Score=27.40 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=29.3
Q ss_pred CCceEEEEecc-ccccccccChHHHHHHHHhcCCcEEE
Q 040741 195 PDTGLISVMAV-NNEIGVIQPMEEIGQICKEFKIPFHT 231 (457)
Q Consensus 195 ~~t~li~i~~~-~~~~G~~~~l~~i~~l~~~~~v~li~ 231 (457)
-.+..++++-+ -|.-|.....+++.+++++||+.++.
T Consensus 157 l~Pa~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 157 LQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALIT 194 (206)
T ss_dssp SCSBEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEEE
T ss_pred CCceEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 35666666662 45689999999999999999998873
No 252
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=34.14 E-value=2.1e+02 Score=25.53 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=34.1
Q ss_pred hcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcC-CcEEE
Q 040741 168 QEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK-IPFHT 231 (457)
Q Consensus 168 ~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~-v~li~ 231 (457)
..|++++..+.. |.++++++++.-..+|....... +.-...+.+.|++.+ +.-++
T Consensus 55 ~~~v~~v~~D~~-----d~~~l~~a~~~~d~vi~~a~~~~----~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 55 SMGVTIIEGEME-----EHEKMVSVLKQVDIVISALPFPM----ISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp HTTCEEEECCTT-----CHHHHHHHHTTCSEEEECCCGGG----SGGGHHHHHHHHHHCCCCEEE
T ss_pred cCCcEEEEecCC-----CHHHHHHHHcCCCEEEECCCccc----hhhHHHHHHHHHHhCCccEEe
Confidence 447776665554 78899998875444443332211 333567888898887 65444
No 253
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=33.75 E-value=26 Score=25.23 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=17.8
Q ss_pred hHHHHHHHHhcCCcEEEehh
Q 040741 215 MEEIGQICKEFKIPFHTDAA 234 (457)
Q Consensus 215 l~~i~~l~~~~~v~li~D~a 234 (457)
-.+|.++++++|++++.|..
T Consensus 29 A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 46899999999999999974
No 254
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=32.56 E-value=76 Score=27.36 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=29.1
Q ss_pred CCCceEEEEeccccccccccChHHHHHHHHhcCCcEEE
Q 040741 194 RPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHT 231 (457)
Q Consensus 194 ~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~ 231 (457)
.-.+..++++-. +.-|.....+++.+++++||+.++.
T Consensus 165 Gl~Pa~vicEi~-~~dG~mar~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 165 GFKPAGVLCELT-NDDGTMARAPECIEFANKHNMALVT 201 (217)
T ss_dssp TSCSCEEEEEBB-CTTSSBCCHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEEe-CCCCCccCHHHHHHHHHHcCCCEEE
Confidence 335666666655 5679999999999999999998774
No 255
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=31.96 E-value=2.6e+02 Score=24.58 Aligned_cols=74 Identities=12% Similarity=0.142 Sum_probs=38.2
Q ss_pred HhCCCCCcEEEeCChHHHHHHHHH-HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHH
Q 040741 113 LIGASPKEIIFTSGATESNNVSIK-GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRA 191 (457)
Q Consensus 113 ~~g~~~~~i~~t~g~T~a~~~al~-~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~ 191 (457)
.+..+...+++|. |+.++-.++. .+. +.|..|++....-.........+...|.++..+.+|-. |.+++++
T Consensus 27 ~~~l~gk~~lVTG-as~GIG~aia~~la----~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~---d~~~v~~ 98 (276)
T 3r1i_A 27 LFDLSGKRALITG-ASTGIGKKVALAYA----EAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVT---QPDQVRG 98 (276)
T ss_dssp GGCCTTCEEEEES-TTSHHHHHHHHHHH----HTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTT---CHHHHHH
T ss_pred ccCCCCCEEEEeC-CCCHHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCC---CHHHHHH
Confidence 3444444455555 4445444333 344 56767665444433444444444455666666666532 6666666
Q ss_pred hcC
Q 040741 192 AIR 194 (457)
Q Consensus 192 ~i~ 194 (457)
+++
T Consensus 99 ~~~ 101 (276)
T 3r1i_A 99 MLD 101 (276)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 256
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=31.38 E-value=20 Score=35.02 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=49.9
Q ss_pred CCCCEEEEcCCCCc--chHH-HHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc-CCCceEEEEeccccccccccChHHHH
Q 040741 144 DKKRHVITTQTEHK--CVLD-SCRHLQQEGFEITYLPVGADGIVNLDELRAAI-RPDTGLISVMAVNNEIGVIQPMEEIG 219 (457)
Q Consensus 144 ~~g~~vi~~~~~h~--~~~~-~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i-~~~t~li~i~~~~~~~G~~~~l~~i~ 219 (457)
.+|+.+|+.-.+.. .+.. +..+++..|++.+.++...........-...- .=.+.-. .+.+..|...++++++
T Consensus 7 ~~g~~~i~~~f~W~w~~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy---~i~~~~Gt~~df~~lv 83 (496)
T 4gqr_A 7 QQGRTSIVHLFEWRWVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSY---KLCTRSGNEDEFRNMV 83 (496)
T ss_dssp CTTCCEEEEETTCCHHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCS---CSCBTTBCHHHHHHHH
T ss_pred CCCCcEEEEecCCCHHHHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCc---eeCCCCCCHHHHHHHH
Confidence 45566666544432 2211 22345677999998865421100000000000 0001001 2455689999999999
Q ss_pred HHHHhcCCcEEEehhh
Q 040741 220 QICKEFKIPFHTDAAQ 235 (457)
Q Consensus 220 ~l~~~~~v~li~D~a~ 235 (457)
+-||++|+.||+|.+.
T Consensus 84 ~~aH~~Gi~VilD~V~ 99 (496)
T 4gqr_A 84 TRCNNVGVRIYVDAVI 99 (496)
T ss_dssp HHHHHTTCEEEEEECC
T ss_pred HHHHHCCCEEEEEEcc
Confidence 9999999999999874
No 257
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=31.04 E-value=58 Score=30.41 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=34.7
Q ss_pred HHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhh
Q 040741 162 SCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236 (457)
Q Consensus 162 ~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~ 236 (457)
.+..++..|++++.+++..++..+ ......++++++.|+++|+++|+|--..
T Consensus 59 ~i~~lk~~G~N~VRip~~~~~~~~-----------------------~~~l~~ld~~v~~a~~~GiyVIlDlH~~ 110 (345)
T 3jug_A 59 AIPAIAEQGANTIRIVLSDGGQWE-----------------------KDDIDTVREVIELAEQNKMVAVVEVHDA 110 (345)
T ss_dssp HHHHHHHTTCSEEEEEECCSSSSC-----------------------CCCHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred HHHHHHHcCCCEEEEEecCCCccC-----------------------HHHHHHHHHHHHHHHHCCCEEEEEeccC
Confidence 344556669999888876322111 1124457889999999999999986544
No 258
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=30.26 E-value=1.8e+02 Score=25.71 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=31.6
Q ss_pred hcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcC-CcEEE
Q 040741 168 QEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK-IPFHT 231 (457)
Q Consensus 168 ~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~-v~li~ 231 (457)
..|++++..+.. |.+.++++++.-..+|....... +.....+.+.|++.+ +.-++
T Consensus 55 ~~~v~~v~~D~~-----d~~~l~~~~~~~d~vi~~a~~~~----~~~~~~l~~aa~~~g~v~~~v 110 (308)
T 1qyc_A 55 ASGANIVHGSID-----DHASLVEAVKNVDVVISTVGSLQ----IESQVNIIKAIKEVGTVKRFF 110 (308)
T ss_dssp TTTCEEECCCTT-----CHHHHHHHHHTCSEEEECCCGGG----SGGGHHHHHHHHHHCCCSEEE
T ss_pred hCCCEEEEeccC-----CHHHHHHHHcCCCEEEECCcchh----hhhHHHHHHHHHhcCCCceEe
Confidence 346666555444 78888888875444443332211 233467888888876 54443
No 259
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=29.72 E-value=45 Score=25.60 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=33.6
Q ss_pred cchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEec
Q 040741 157 KCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMA 204 (457)
Q Consensus 157 ~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~ 204 (457)
.....+++.++..|.++..+.+..-..+|.+.+.+.++...++++++.
T Consensus 26 ~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~ 73 (118)
T 3ju3_A 26 GPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVES 73 (118)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCC
T ss_pred HHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEEC
Confidence 333445556666788888888776667788888888876666666665
No 260
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=29.03 E-value=2.7e+02 Score=24.32 Aligned_cols=73 Identities=10% Similarity=0.207 Sum_probs=39.1
Q ss_pred hCCCCCcEEEeCChHHHHHHHHH-HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHh
Q 040741 114 IGASPKEIIFTSGATESNNVSIK-GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAA 192 (457)
Q Consensus 114 ~g~~~~~i~~t~g~T~a~~~al~-~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~ 192 (457)
+..... .++..||+.++-.++. .+. +.|..|++....-.........+...|.++..+.+|-. |.++++++
T Consensus 22 ~~l~gk-~~lVTGas~gIG~aia~~la----~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~---d~~~v~~~ 93 (271)
T 4ibo_A 22 FDLGGR-TALVTGSSRGLGRAMAEGLA----VAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVT---SESEIIEA 93 (271)
T ss_dssp GCCTTC-EEEETTCSSHHHHHHHHHHH----HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTT---CHHHHHHH
T ss_pred cCCCCC-EEEEeCCCcHHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCC---CHHHHHHH
Confidence 444433 4444455555444333 344 67778877654443333344444455777777766532 66666665
Q ss_pred cC
Q 040741 193 IR 194 (457)
Q Consensus 193 i~ 194 (457)
++
T Consensus 94 ~~ 95 (271)
T 4ibo_A 94 FA 95 (271)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 261
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=28.90 E-value=87 Score=29.27 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhCCCCCcE-EEeCC--------hHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchH
Q 040741 102 AVETARSQIADLIGASPKEI-IFTSG--------ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVL 160 (457)
Q Consensus 102 ~~~~~~~~la~~~g~~~~~i-~~t~g--------~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~ 160 (457)
=...+++.|.+.+|.+++++ +++.. ....+..++..+..-. +++|.+++.-..|....
T Consensus 76 DA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a-~pgD~llfYFSGHG~q~ 142 (350)
T 4f6o_A 76 DAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDA-QPNDSLFLHYSGHGGQT 142 (350)
T ss_dssp HHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTTC-CTTCEEEEEEESCEEEC
T ss_pred HHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHhC-CCCCEEEEEEcCCceec
Confidence 44556677777788876665 45542 2334555665554311 47889888666675543
No 262
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=28.27 E-value=75 Score=22.08 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=25.6
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741 404 TSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434 (457)
Q Consensus 404 ~~iRi~~~~~~t~edid~~~~~l~~~~~~~~ 434 (457)
.++||++..- ++.+.+++...|.+++.++.
T Consensus 46 krvrisitar-tkkeaekfaailikvfaelg 75 (106)
T 1qys_A 46 KRVRISITAR-TKKEAEKFAAILIKVFAELG 75 (106)
T ss_dssp SEEEEEEECS-SHHHHHHHHHHHHHHHHHTT
T ss_pred cEEEEEEEec-chhHHHHHHHHHHHHHHHhC
Confidence 6899999875 47889999999999998775
No 263
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=27.91 E-value=2e+02 Score=23.78 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=28.8
Q ss_pred HHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEE
Q 040741 187 DELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH 230 (457)
Q Consensus 187 ~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li 230 (457)
+.+...++++..+|+++. +|....+-++++.+|+.|+.++
T Consensus 105 ~~~~~~~~~~DvvI~iS~----SG~t~~~i~~~~~ak~~g~~vI 144 (199)
T 1x92_A 105 KQIRALGQPGDVLLAIST----SGNSANVIQAIQAAHDREMLVV 144 (199)
T ss_dssp HHHHHHCCTTCEEEEECS----SSCCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHhCCCCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCEEE
Confidence 344556777777777755 5766777788899999987654
No 264
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=27.66 E-value=2.2e+02 Score=25.22 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccc---ccChHHHHHHHHhcCCcEEEeh
Q 040741 160 LDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV---IQPMEEIGQICKEFKIPFHTDA 233 (457)
Q Consensus 160 ~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~---~~~l~~i~~l~~~~~v~li~D~ 233 (457)
..+++.+...|+.+..+-.+ |+..-+++.+-...+|.. ...+.|. +.+.+-|..+++..++++|+|+
T Consensus 125 v~aa~~L~~~Gf~Vlpy~~d-----d~~~akrl~~~G~~aVmP--lg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eG 194 (265)
T 1wv2_A 125 LKAAEQLVKDGFDVMVYTSD-----DPIIARQLAEIGCIAVMP--LAGLIGSGLGICNPYNLRIILEEAKVPVLVDA 194 (265)
T ss_dssp HHHHHHHHTTTCEEEEEECS-----CHHHHHHHHHSCCSEEEE--CSSSTTCCCCCSCHHHHHHHHHHCSSCBEEES
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CHHHHHHHHHhCCCEEEe--CCccCCCCCCcCCHHHHHHHHhcCCCCEEEeC
Confidence 34455555669999865555 666555555556656633 1223332 2355666666676799999974
No 265
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=27.64 E-value=1.1e+02 Score=27.06 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=36.3
Q ss_pred EEEeCChHHHHHHHHH-HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC
Q 040741 121 IIFTSGATESNNVSIK-GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR 194 (457)
Q Consensus 121 i~~t~g~T~a~~~al~-~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~ 194 (457)
+.+.+||+.++=.++. .+. +.|.+|++....-.......+.++..|.++..+.+|-. |.++++++++
T Consensus 9 valVTGas~GIG~aiA~~la----~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt---~~~~v~~~~~ 76 (254)
T 4fn4_A 9 VVIVTGAGSGIGRAIAKKFA----LNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVS---KKKDVEEFVR 76 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHH----HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT---SHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH----HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCC---CHHHHHHHHH
Confidence 4444445555544443 333 56767766554443344444445556777777776632 5666665553
No 266
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=27.34 E-value=2.4e+02 Score=24.79 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=37.6
Q ss_pred HHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc-CCCceEEEEeccccccccccChHHHHHHHHhc
Q 040741 163 CRHLQQEGFEITYLPVGADGIVNLDELRAAI-RPDTGLISVMAVNNEIGVIQPMEEIGQICKEF 225 (457)
Q Consensus 163 ~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i-~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~ 225 (457)
...++..|++|+++..+ +.++++.+++ ..++.+|+++... +.....++++.+..++.
T Consensus 144 a~~L~~~G~~Vi~LG~~----vp~e~l~~~~~~~~~d~V~lS~l~--~~~~~~~~~~i~~l~~~ 201 (258)
T 2i2x_B 144 TALLRANGYNVVDLGRD----VPAEEVLAAVQKEKPIMLTGTALM--TTTMYAFKEVNDMLLEN 201 (258)
T ss_dssp HHHHHHTTCEEEEEEEE----CCSHHHHHHHHHHCCSEEEEECCC--TTTTTHHHHHHHHHHTT
T ss_pred HHHHHHCCCEEEECCCC----CCHHHHHHHHHHcCCCEEEEEeec--cCCHHHHHHHHHHHHhc
Confidence 34557789999998765 3456665544 4577788887653 33444577777777765
No 267
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=27.16 E-value=38 Score=24.90 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=17.8
Q ss_pred hHHHHHHHHhcCCcEEEehh
Q 040741 215 MEEIGQICKEFKIPFHTDAA 234 (457)
Q Consensus 215 l~~i~~l~~~~~v~li~D~a 234 (457)
-.+|.++|+++|++++.|..
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEECHH
Confidence 46899999999999999974
No 268
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=26.70 E-value=35 Score=25.35 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=17.8
Q ss_pred hHHHHHHHHhcCCcEEEehh
Q 040741 215 MEEIGQICKEFKIPFHTDAA 234 (457)
Q Consensus 215 l~~i~~l~~~~~v~li~D~a 234 (457)
-.+|.++|+++|++++.|..
T Consensus 44 A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 44 AKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCeEEECHH
Confidence 46799999999999999975
No 269
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=26.66 E-value=47 Score=32.59 Aligned_cols=68 Identities=12% Similarity=0.118 Sum_probs=42.6
Q ss_pred hHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhh
Q 040741 159 VLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235 (457)
Q Consensus 159 ~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~ 235 (457)
+..-+.+++..|++.+++..-..... .-.-...-.-.++...|...+++++++-||++|+.||+|.+.
T Consensus 58 i~~~LdyL~~LGv~~I~L~Pi~~~~~---------~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~ 125 (488)
T 2wc7_A 58 IMEDLDYIQNLGINAIYFTPIFQSAS---------NHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVVLDGVF 125 (488)
T ss_dssp HHHTHHHHHHHTCCEEEESCCEEECT---------TCTTSEEEEEEECGGGTHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHhhHHHHHcCCCEEEECCCCCCCC---------CCCCCCcCccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 33345566666888887753211000 011112222334445899999999999999999999999874
No 270
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=26.22 E-value=54 Score=31.96 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=43.8
Q ss_pred chHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhh
Q 040741 158 CVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235 (457)
Q Consensus 158 ~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~ 235 (457)
....-+.+++..|++.+++..-....- ...-...-.-.++...|...+++++++-||++|+.||+|.+.
T Consensus 51 gi~~~LdyL~~LGv~~I~l~Pi~~~~~---------~~gY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~VilD~V~ 119 (475)
T 2z1k_A 51 GVAEKLPYLLDLGVEAIYLNPVFASTA---------NHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVILDGVF 119 (475)
T ss_dssp HHHHTHHHHHHHTCCEEEECCCEEESS---------TTCCSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHhHHHHHcCCCEEEECCCcCCCC---------CCCcCCCCcCccCcccCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 333445566667988888753211100 011122323334445799999999999999999999999874
No 271
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=26.16 E-value=1.2e+02 Score=26.86 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=36.9
Q ss_pred CHHHHHHhcC-----CCceEEEEe----ccccccccccChHHHHHHHHhcCCcEEEehhhhcCCC
Q 040741 185 NLDELRAAIR-----PDTGLISVM----AVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI 240 (457)
Q Consensus 185 d~~~le~~i~-----~~t~li~i~----~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~ 240 (457)
+++++..++. -+..++.+. ...+..=...++..+..+.+.+++++|.|..|+.|..
T Consensus 142 t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~d~sH~~g~~ 206 (262)
T 1zco_A 142 TIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAGRR 206 (262)
T ss_dssp CHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSSTTTCSG
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEEEcCCCCCcc
Confidence 7888877762 233444444 2112223345678888888888999999999997754
No 272
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=25.77 E-value=30 Score=33.65 Aligned_cols=75 Identities=9% Similarity=0.066 Sum_probs=46.1
Q ss_pred cCCCCcchHHH-HHHHHhcCcEEEEEeCCCC---CCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCC
Q 040741 152 TQTEHKCVLDS-CRHLQQEGFEITYLPVGAD---GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKI 227 (457)
Q Consensus 152 ~~~~h~~~~~~-~~~~~~~G~~v~~v~~~~~---~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v 227 (457)
....+..+..- ..+++..|++.+++..-.. +..+.... ++.-. .++...|...+++++++-||++|+
T Consensus 9 F~w~~~gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY------~~~~y---~idp~~Gt~~dfk~Lv~~aH~~Gi 79 (448)
T 1g94_A 9 FEWNWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRY------QPVSY---ELQSRGGNRAQFIDMVNRCSAAGV 79 (448)
T ss_dssp TTCCHHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGG------SBSCS---CSCBTTBCHHHHHHHHHHHHHTTC
T ss_pred ecCcHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCcccc------ccccc---ccCCCCCCHHHHHHHHHHHHHCCC
Confidence 33445555543 3566777999888754211 10000000 11101 344558999999999999999999
Q ss_pred cEEEehhh
Q 040741 228 PFHTDAAQ 235 (457)
Q Consensus 228 ~li~D~a~ 235 (457)
.||+|.+.
T Consensus 80 ~VilD~V~ 87 (448)
T 1g94_A 80 DIYVDTLI 87 (448)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEee
Confidence 99999874
No 273
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=25.30 E-value=38 Score=25.18 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=17.7
Q ss_pred hHHHHHHHHhcCCcEEEehh
Q 040741 215 MEEIGQICKEFKIPFHTDAA 234 (457)
Q Consensus 215 l~~i~~l~~~~~v~li~D~a 234 (457)
-.+|.++|+++|++++.|..
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVIVDIK 48 (98)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCCeecCHH
Confidence 46899999999999999964
No 274
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=25.06 E-value=32 Score=32.17 Aligned_cols=54 Identities=11% Similarity=0.012 Sum_probs=37.4
Q ss_pred cEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC
Q 040741 120 EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG 179 (457)
Q Consensus 120 ~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~ 179 (457)
.++-+++|..+.-+|..+-.. +-+..|+++...-......++. .|++|+.++..
T Consensus 89 ~Vv~aSsGN~g~alA~~aa~~---G~~~~IvmP~~~~~~k~~~~~~---~GA~Vv~v~~~ 142 (344)
T 3vc3_A 89 TLIEPTSGNMGISMAFMAAMK---GYKMVLTMPSYTSLERRVTMRA---FGAELILTDPA 142 (344)
T ss_dssp EEEEECSSHHHHHHHHHHHHH---TCEEEEEEETTSCHHHHHHHHH---TTCEEEEECGG
T ss_pred EEEEeCCcHHHHHHHHHHHHc---CCcEEEEECCCChHHHHHHHHH---cCCEEEEECCC
Confidence 477777888888777776543 5567788877665555555544 49999988643
No 275
>4ggi_A UDP-2,3-diacylglucosamine pyrophosphatase LPXI; structural genomics, PSI-biology; HET: UDG; 2.52A {Caulobacter crescentus} PDB: 4ggm_X*
Probab=24.84 E-value=68 Score=28.99 Aligned_cols=56 Identities=13% Similarity=-0.036 Sum_probs=40.1
Q ss_pred cEEEEEeCCCCCCCCH-----HHHHHhcCCCceEEEEeccccccccc-cChHHHHHHHHhcCCcEE
Q 040741 171 FEITYLPVGADGIVNL-----DELRAAIRPDTGLISVMAVNNEIGVI-QPMEEIGQICKEFKIPFH 230 (457)
Q Consensus 171 ~~v~~v~~~~~~~~d~-----~~le~~i~~~t~li~i~~~~~~~G~~-~~l~~i~~l~~~~~v~li 230 (457)
.-+.......|..+|+ +.++.+.+..-+.|++.. .|++ .+-+++.+.|.++|+.++
T Consensus 214 ~~~k~~k~~qD~~fd~P~iG~dti~~~~~ag~~~ivi~~----g~si~~~~~~~i~~a~~~gi~~~ 275 (283)
T 4ggi_A 214 VLAKAPKPIQETRVALPTIGVATIHRAARAGLAGIVGEA----GRLLVVDREAVIAAADDLGLFVL 275 (283)
T ss_dssp EEEECCCCC---CCCCCEECHHHHHHHHHTTCCEEEEET----TBCEETTHHHHHHHHHHHTCEEE
T ss_pred ceecccccccccccCCccccHHHHHHHHHcCCeEEEEcC----CCcEEeCHHHHHHHHHHcCCEEE
Confidence 3344344457777887 889998888888887765 4555 588999999999999887
No 276
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=24.56 E-value=3.1e+02 Score=23.91 Aligned_cols=67 Identities=9% Similarity=0.088 Sum_probs=35.9
Q ss_pred EEEeCChHHHHHHHHH-HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC
Q 040741 121 IIFTSGATESNNVSIK-GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR 194 (457)
Q Consensus 121 i~~t~g~T~a~~~al~-~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~ 194 (457)
.++..||+.++-.++. .+. +.|..|++..............+...|.++..+.+|-. |.++++++++
T Consensus 6 ~~lVTGas~GIG~aia~~la----~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~---d~~~v~~~~~ 73 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELG----VAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVT---DRHSVAAFAQ 73 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHH----HTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTT---CHHHHHHHHH
T ss_pred EEEEeCCccHHHHHHHHHHH----HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCC---CHHHHHHHHH
Confidence 4455555555544443 344 56777766544433333334444455777777776532 5666666553
No 277
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=24.31 E-value=1e+02 Score=29.01 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhCCCCCcE-EEeCC---------hH-HHHHHHHHHhhhhhcCCCCEEEEcCCCCc
Q 040741 102 AVETARSQIADLIGASPKEI-IFTSG---------AT-ESNNVSIKGVMHFYKDKKRHVITTQTEHK 157 (457)
Q Consensus 102 ~~~~~~~~la~~~g~~~~~i-~~t~g---------~T-~a~~~al~~~~~~~~~~g~~vi~~~~~h~ 157 (457)
=...+++.|.+ +|.+.+++ +++.. .| ..+..++.-+..- .+++|.+++.-..|.
T Consensus 115 DA~~m~~~L~~-~GF~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~~~-a~pgD~l~fyFSGHG 179 (367)
T 4af8_A 115 DVKQMLATLQK-RGLPINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKD-AKPGDVLFFHYSGHG 179 (367)
T ss_dssp HHHHHHHHHHH-TTCCCSEEEEEECCTTCTTCCBCCCHHHHHHHHHHHHHT-CCTTCEEEEEEESCE
T ss_pred HHHHHHHHHHH-cCCCchheEEecccccccccccCCCHHHHHHHHHHHHHh-CCCCCEEEEEEcCCc
Confidence 34445556644 68876664 44432 33 3355555544321 157888887554553
No 278
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=24.25 E-value=86 Score=28.12 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=33.8
Q ss_pred HHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehh
Q 040741 162 SCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAA 234 (457)
Q Consensus 162 ~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a 234 (457)
.++.++..|++.+.+++...+..+ ......++++.+.|+++|+++|+|--
T Consensus 36 ~~~~i~~~G~N~VRi~~~~~~~~~-----------------------~~~~~~ld~~v~~a~~~Gi~Vild~H 85 (294)
T 2whl_A 36 AIPAIAEQGANTIRIVLSDGGQWE-----------------------KDDIDTIREVIELAEQNKMVAVVEVH 85 (294)
T ss_dssp HHHHHHHTTCSEEEEEECCSSSSC-----------------------CCCHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHHcCCCEEEEEecCCCccC-----------------------ccHHHHHHHHHHHHHHCCCEEEEEec
Confidence 445556679999999876221110 11234478899999999999999854
No 279
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=23.78 E-value=1.4e+02 Score=26.83 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC
Q 040741 100 EVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG 179 (457)
Q Consensus 100 ~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~ 179 (457)
.+.+..+++. ++-+|.+ ++-+.--..+...+... . +.+-+...+-..... .+.+...|. ++.++
T Consensus 88 ~~gl~~l~~~-~~~~Gl~---~~te~~d~~~~~~l~~~-v-------d~~kIgs~~~~n~~l-l~~~a~~~k-PV~lk-- 151 (276)
T 1vs1_A 88 LEGLKLLRRA-GDEAGLP---VVTEVLDPRHVETVSRY-A-------DMLQIGARNMQNFPL-LREVGRSGK-PVLLK-- 151 (276)
T ss_dssp HHHHHHHHHH-HHHHTCC---EEEECCCGGGHHHHHHH-C-------SEEEECGGGTTCHHH-HHHHHHHTC-CEEEE--
T ss_pred HHHHHHHHHH-HHHcCCc---EEEecCCHHHHHHHHHh-C-------CeEEECcccccCHHH-HHHHHccCC-eEEEc--
Confidence 3445445443 6667775 55555555555554332 3 333343332222211 122222253 33444
Q ss_pred CCCC-CCHHHHHHhcC-----CCceEEEEe-cccc-cc--ccccChHHHHHHHHhcCCcEEEehhhhcCCC
Q 040741 180 ADGI-VNLDELRAAIR-----PDTGLISVM-AVNN-EI--GVIQPMEEIGQICKEFKIPFHTDAAQALGKI 240 (457)
Q Consensus 180 ~~~~-~d~~~le~~i~-----~~t~li~i~-~~~~-~~--G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~ 240 (457)
+|. .++++++.+++ -+..++.+. .+.+ |+ =...++..|..+.+.++++++.|..|+.|..
T Consensus 152 -~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~~lpVi~dssH~~g~~ 221 (276)
T 1vs1_A 152 -RGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVIVDPSHPAGRR 221 (276)
T ss_dssp -CCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHBSSCEEECCHHHHCSG
T ss_pred -CCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHhCCCEEEeCCCCCCcc
Confidence 333 37788777764 234555554 3322 22 2335688888887778999999999998854
No 280
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}
Probab=23.77 E-value=2.6e+02 Score=25.35 Aligned_cols=20 Identities=5% Similarity=-0.009 Sum_probs=16.3
Q ss_pred hHHHHHHHHhcCCcEEEehh
Q 040741 215 MEEIGQICKEFKIPFHTDAA 234 (457)
Q Consensus 215 l~~i~~l~~~~~v~li~D~a 234 (457)
+.++.+.++++++.+++|-.
T Consensus 173 ~~~~~~~a~~~g~~v~~Dp~ 192 (336)
T 4du5_A 173 ARKTMDLMRAAGRSVSFDPN 192 (336)
T ss_dssp HHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHCCCEEEEeCc
Confidence 45677788889999999975
No 281
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=23.65 E-value=2.6e+02 Score=21.67 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=28.8
Q ss_pred HHHHHhcC-CCceEEEEeccccccccccChHHHHHHHHhcCCcEEE
Q 040741 187 DELRAAIR-PDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHT 231 (457)
Q Consensus 187 ~~le~~i~-~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~ 231 (457)
+.+..++. .+...|+++ |...|-+++.++|+++|++++.
T Consensus 64 ~~~l~a~~~~~~~~iIlt------~g~~~~~~i~~~A~~~~ipvl~ 103 (139)
T 2ioj_A 64 DLLLTALEMPNVRCLILT------GNLEPVQLVLTKAEERGVPVIL 103 (139)
T ss_dssp HHHHHHTTCTTEEEEEEE------TTCCCCHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhCCCCcEEEEc------CCCCCCHHHHHHHHHCCCeEEE
Confidence 44556666 677777774 4456778889999999999885
No 282
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=23.24 E-value=3.6e+02 Score=23.87 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=16.9
Q ss_pred hHHHHHHHHhcCCcEEEehh
Q 040741 215 MEEIGQICKEFKIPFHTDAA 234 (457)
Q Consensus 215 l~~i~~l~~~~~v~li~D~a 234 (457)
+.++.+.++++++.+++|..
T Consensus 149 ~~~~~~~a~~~~~~v~~D~~ 168 (309)
T 3umo_A 149 LTQLISAAQKQGIRCIVDSS 168 (309)
T ss_dssp HHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHhcCCEEEEECC
Confidence 66788888999999999974
No 283
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=22.90 E-value=36 Score=33.35 Aligned_cols=31 Identities=10% Similarity=0.087 Sum_probs=26.9
Q ss_pred cccccccccChHHHHHHHHhcCCcEEEehhh
Q 040741 205 VNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235 (457)
Q Consensus 205 ~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~ 235 (457)
+....|...+++++++-||++|+.||+|.+.
T Consensus 71 id~~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 101 (483)
T 3bh4_A 71 VRTKYGTKSELQDAIGSLHSRNVQVYGDVVL 101 (483)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 4445788899999999999999999999874
No 284
>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A*
Probab=22.70 E-value=1.3e+02 Score=28.16 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=36.6
Q ss_pred HHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhh
Q 040741 161 DSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235 (457)
Q Consensus 161 ~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~ 235 (457)
..+..++..|++.+.+|+....... +... ...+ ...+.-++++++.|+++|+.+|+|--+
T Consensus 66 ~di~~i~~~G~N~vRipi~w~~~~~---------~~~~-----~~~~-~~~l~~~~~vv~~a~~~Gi~vildlH~ 125 (376)
T 3ayr_A 66 DMFKVLIDNQFNVFRIPTTWSGHFG---------EAPD-----YKID-EKWLKRVHEVVDYPYKNGAFVILNLHH 125 (376)
T ss_dssp HHHHHHHHTTCCEEEECCCCTTSBC---------CTTT-----CCBC-HHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred HHHHHHHHcCCCEEEEeeEChhhcC---------CCCC-----CccC-HHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 3455556679999999987432111 0000 0000 112334788999999999999999654
No 285
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1
Probab=22.61 E-value=3.5e+02 Score=23.95 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=29.5
Q ss_pred CCCHHHHHHh---cC--CCceEEEEeccccccccc-cChHHHHHHHHhcCCcEEEehh
Q 040741 183 IVNLDELRAA---IR--PDTGLISVMAVNNEIGVI-QPMEEIGQICKEFKIPFHTDAA 234 (457)
Q Consensus 183 ~~d~~~le~~---i~--~~t~li~i~~~~~~~G~~-~~l~~i~~l~~~~~v~li~D~a 234 (457)
.++.+++... +. .+.+++++... .+.+.. .-+.++.+.++++++.+++|..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 163 (306)
T 2abq_A 107 LIKKEHVQALLEQLTELEKGDVLVLAGS-VPQAMPQTIYRSMTQIAKERGAFVAVDTS 163 (306)
T ss_dssp CCCHHHHHHHHHHHTTCCTTCEEEEESC-CCTTSCTTHHHHHHHHHHTTTCEEEEECC
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEecC-CCCCCCHHHHHHHHHHHHhcCCEEEEECC
Confidence 4566665442 21 34556665432 122221 2266788889999999999964
No 286
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=22.34 E-value=2.4e+02 Score=24.38 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=34.7
Q ss_pred HHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEE
Q 040741 166 LQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHT 231 (457)
Q Consensus 166 ~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~ 231 (457)
+...|+++.....+.+..-..+.++.++..+...|++..... .+..+.+++.+++++.
T Consensus 33 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--------~~~~~~l~~~~iPvV~ 90 (276)
T 3jy6_A 33 LESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--------PQTVQEILHQQMPVVS 90 (276)
T ss_dssp HHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--------HHHHHHHHTTSSCEEE
T ss_pred HHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--------HHHHHHHHHCCCCEEE
Confidence 356699998887653321112345555566676676654421 5666677778887663
No 287
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=22.23 E-value=37 Score=32.84 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=45.0
Q ss_pred CCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehh
Q 040741 155 EHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAA 234 (457)
Q Consensus 155 ~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a 234 (457)
.+.+...-+.+++..|++.+++..-....- .-.-...-...++...|...+++++++-||++|+.||+|.+
T Consensus 21 d~~gi~~~LdyL~~LGv~~I~L~Pi~~~~~---------~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~V 91 (441)
T 1lwj_A 21 DFRGLKNAVSYLKELGIDFVWLMPVFSSIS---------FHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVVLDLP 91 (441)
T ss_dssp CHHHHHHTHHHHHHTTCCEEEECCCEECSS---------SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCCCcCCCC---------CCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 344444556677778998888753211000 00111111122344579999999999999999999999987
Q ss_pred h
Q 040741 235 Q 235 (457)
Q Consensus 235 ~ 235 (457)
.
T Consensus 92 ~ 92 (441)
T 1lwj_A 92 I 92 (441)
T ss_dssp T
T ss_pred C
Confidence 4
No 288
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=22.15 E-value=1.5e+02 Score=26.65 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=42.3
Q ss_pred CEEEEcCCCCcchHHHHHHHHhcCcEEEEEe-CCCCCCCCHHHHHHhcC----CCceEEEEeccccccccccChHHHHHH
Q 040741 147 RHVITTQTEHKCVLDSCRHLQQEGFEITYLP-VGADGIVNLDELRAAIR----PDTGLISVMAVNNEIGVIQPMEEIGQI 221 (457)
Q Consensus 147 ~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~-~~~~~~~d~~~le~~i~----~~t~li~i~~~~~~~G~~~~l~~i~~l 221 (457)
..+++ .|+++...++.. |++...+. ++.+..+.+.+|.+.++ .+.+.|+++...++ -..+.|.++
T Consensus 164 ~~~vt---~H~af~Y~~~~y---Gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~----~~~~~l~~~ 233 (282)
T 3mfq_A 164 RYLVT---PHDAFNYFAASY---DFTLYAPQGVSTDSEVANSDMIETVNLIIDHNIKAIFTESTTNP----ERMKKLQEA 233 (282)
T ss_dssp CEEEC---SSSCCHHHHHHT---TCEEECSSCSSSCSCCCHHHHHHHHHHHHHHTCCEEECBTTSCT----HHHHHHHHH
T ss_pred cEEEE---ECchHHHHHHHC---CCeEecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh----HHHHHHHHH
Confidence 44554 466655555555 98876542 33444566666666543 35566766543221 125667788
Q ss_pred HHhcCCcEE
Q 040741 222 CKEFKIPFH 230 (457)
Q Consensus 222 ~~~~~v~li 230 (457)
|++.|+.+.
T Consensus 234 a~~~g~~v~ 242 (282)
T 3mfq_A 234 VKAKGGQVE 242 (282)
T ss_dssp HHTTSCCCE
T ss_pred HHhcCCceE
Confidence 888887654
No 289
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=22.11 E-value=1.4e+02 Score=25.97 Aligned_cols=37 Identities=8% Similarity=0.026 Sum_probs=28.5
Q ss_pred CCCceEEEEeccccc-----------cccccChHHHHHHHHhcCCcEEE
Q 040741 194 RPDTGLISVMAVNNE-----------IGVIQPMEEIGQICKEFKIPFHT 231 (457)
Q Consensus 194 ~~~t~li~i~~~~~~-----------~G~~~~l~~i~~l~~~~~v~li~ 231 (457)
.-.+..++++-. +. -|.....+++.+++++||+.++.
T Consensus 165 Gl~PagVicEi~-~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 165 GKRPVAVISEIV-DDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCT 212 (233)
T ss_dssp TCCSBEEEEEBE-ECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEeC-CCcccccccccCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 335666666655 44 58999999999999999998874
No 290
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=22.11 E-value=3.4e+02 Score=23.11 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=44.5
Q ss_pred CEEEEcCCCCcch-HHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC--CceEEEEecccc-ccccccC---hHHHH
Q 040741 147 RHVITTQTEHKCV-LDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP--DTGLISVMAVNN-EIGVIQP---MEEIG 219 (457)
Q Consensus 147 ~~vi~~~~~h~~~-~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~--~t~li~i~~~~~-~~G~~~~---l~~i~ 219 (457)
|-|.+........ ...++.++..|..+. +.++++. +.+.+++.... ....|.+..++. .+|...+ ++.+.
T Consensus 89 d~v~vH~~~~~~~~~~~~~~i~~~g~~ig-v~~~p~t--~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~ 165 (228)
T 1h1y_A 89 SGFTFHIEVSRDNWQELIQSIKAKGMRPG-VSLRPGT--PVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVR 165 (228)
T ss_dssp SEEEEEGGGCTTTHHHHHHHHHHTTCEEE-EEECTTS--CGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHH
T ss_pred CEEEECCCCcccHHHHHHHHHHHcCCCEE-EEEeCCC--CHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHH
Confidence 4554433222223 445566666677665 4444332 34445544432 455777766642 2344433 56677
Q ss_pred HHHHhc-CCcEEEeh
Q 040741 220 QICKEF-KIPFHTDA 233 (457)
Q Consensus 220 ~l~~~~-~v~li~D~ 233 (457)
++.+.. ++++.+|+
T Consensus 166 ~~~~~~~~~pi~v~G 180 (228)
T 1h1y_A 166 ALRKKYPSLDIEVDG 180 (228)
T ss_dssp HHHHHCTTSEEEEES
T ss_pred HHHHhcCCCCEEEEC
Confidence 776666 77887775
No 291
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=21.90 E-value=2.4e+02 Score=24.00 Aligned_cols=67 Identities=13% Similarity=0.283 Sum_probs=34.5
Q ss_pred EEEeCChHHHHHHHH-HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC
Q 040741 121 IIFTSGATESNNVSI-KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR 194 (457)
Q Consensus 121 i~~t~g~T~a~~~al-~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~ 194 (457)
.++..||+.++-.++ +.+. +.|..|++..............+...|.++..+.+|-. |.++++++++
T Consensus 7 ~vlITGas~gIG~~~a~~l~----~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~ 74 (247)
T 3lyl_A 7 VALVTGASRGIGFEVAHALA----SKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNIS---DIESIQNFFA 74 (247)
T ss_dssp EEEESSCSSHHHHHHHHHHH----HTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTT---CHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCC---CHHHHHHHHH
Confidence 344444554544333 3344 56777765444333333333444455777777776632 5666665543
No 292
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=21.66 E-value=40 Score=33.44 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=26.8
Q ss_pred cccccccccChHHHHHHHHhcCCcEEEehhh
Q 040741 205 VNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235 (457)
Q Consensus 205 ~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~ 235 (457)
+....|...+++++++-||++|+.||+|.+.
T Consensus 74 idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 104 (515)
T 1hvx_A 74 VRTKYGTKAQYLQAIQAAHAAGMQVYADVVF 104 (515)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3445788899999999999999999999874
No 293
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=21.64 E-value=40 Score=33.00 Aligned_cols=31 Identities=19% Similarity=0.116 Sum_probs=26.8
Q ss_pred cccccccccChHHHHHHHHhcCCcEEEehhh
Q 040741 205 VNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235 (457)
Q Consensus 205 ~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~ 235 (457)
+....|...+++++++-||++|+.||+|.+.
T Consensus 73 idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 103 (480)
T 1ud2_A 73 VRTKYGTKAQLERAIGSLKSNDINVYGDVVM 103 (480)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 3344788889999999999999999999874
No 294
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=21.57 E-value=40 Score=33.04 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=26.9
Q ss_pred cccccccccChHHHHHHHHhcCCcEEEehhh
Q 040741 205 VNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235 (457)
Q Consensus 205 ~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~ 235 (457)
+....|...+++++++-||++|+.||+|.+.
T Consensus 75 idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~ 105 (485)
T 1wpc_A 75 VRTKYGTRSQLQAAVTSLKNNGIQVYGDVVM 105 (485)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3445788899999999999999999999874
No 295
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=21.36 E-value=41 Score=32.48 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=26.7
Q ss_pred cccccccccChHHHHHHHHhcCCcEEEehhh
Q 040741 205 VNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235 (457)
Q Consensus 205 ~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~ 235 (457)
++...|...+++++++-||++|+.||+|.+.
T Consensus 79 id~~~Gt~~df~~lv~~~H~~Gi~VilD~V~ 109 (435)
T 1mxg_A 79 VETRFGSKEELVRLIQTAHAYGIKVIADVVI 109 (435)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 3444788888999999999999999999874
No 296
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=21.35 E-value=3.5e+02 Score=23.63 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=35.1
Q ss_pred EEEeCChHHHHHHHHH-HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC
Q 040741 121 IIFTSGATESNNVSIK-GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR 194 (457)
Q Consensus 121 i~~t~g~T~a~~~al~-~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~ 194 (457)
+++|. |+.++-.++. .+. +.|.+|++..............+...|.++..+.+|-. |.++++++++
T Consensus 27 ~lVTG-as~GIG~aia~~la----~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~---d~~~v~~~~~ 93 (279)
T 3sju_A 27 AFVTG-VSSGIGLAVARTLA----ARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVT---STDEVHAAVA 93 (279)
T ss_dssp EEEES-TTSHHHHHHHHHHH----HTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTT---CHHHHHHHHH
T ss_pred EEEeC-CCCHHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCC---CHHHHHHHHH
Confidence 55554 5545444333 344 56777766544433333334444445677777766632 6666666554
No 297
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=20.66 E-value=4.5e+02 Score=23.33 Aligned_cols=117 Identities=20% Similarity=0.234 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcC--CCCcchHHHHHHHHhcCcEEEEEeCC
Q 040741 102 AVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQ--TEHKCVLDSCRHLQQEGFEITYLPVG 179 (457)
Q Consensus 102 ~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~--~~h~~~~~~~~~~~~~G~~v~~v~~~ 179 (457)
....+.+..++++. +...++|-+.+......++.+.. .++.-+|++.+ |...+... +..+...|++++.+.-.
T Consensus 95 ~~~~Ia~~a~~~I~--~g~~IlT~~~s~Tv~~~l~~a~~--~~~~~~V~v~etrP~~qG~~~-a~~L~~~gI~vtli~ds 169 (276)
T 1vb5_A 95 AKRELASIGAQLID--DGDVIITHSFSSTVLEIIRTAKE--RKKRFKVILTESSPDYEGLHL-ARELEFSGIEFEVITDA 169 (276)
T ss_dssp HHHHHHHHHHHHCC--TTEEEECCSCCHHHHHHHHHHHH--TTCCEEEEEECCTTTTHHHHH-HHHHHHTTCCEEEECGG
T ss_pred HHHHHHHHHHHHcc--CCCEEEEeCCChHHHHHHHHHHH--cCCeEEEEEeCCCcchhhHHH-HHHHHHCCCCEEEEcHH
Confidence 34445555566664 33466654433333334444331 03456677733 45555333 34444579999999722
Q ss_pred CCCCCCHHHHHHhcC-CCceEEEEeccccccccccC--hHHHHHHHHhcCCcEEE
Q 040741 180 ADGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQP--MEEIGQICKEFKIPFHT 231 (457)
Q Consensus 180 ~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~~--l~~i~~l~~~~~v~li~ 231 (457)
. +-..+. -+..++-...+....|.... --.++..|+++++++++
T Consensus 170 a--------~~~~m~~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~~V 216 (276)
T 1vb5_A 170 Q--------MGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYV 216 (276)
T ss_dssp G--------HHHHHTTCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEE
T ss_pred H--------HHHHHccCCEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCEEE
Confidence 1 111222 22333333444333344333 34688889999999887
No 298
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=20.21 E-value=4.5e+02 Score=23.24 Aligned_cols=66 Identities=11% Similarity=0.228 Sum_probs=35.7
Q ss_pred EEEeCChHHHHHHHHH-HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC
Q 040741 121 IIFTSGATESNNVSIK-GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR 194 (457)
Q Consensus 121 i~~t~g~T~a~~~al~-~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~ 194 (457)
+++|. |+.++-.++. .+. +.|..|++....-.........+...|.++.++.+|-. |.++++++++
T Consensus 34 vlVTG-as~gIG~~la~~l~----~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~---d~~~v~~~~~ 100 (301)
T 3tjr_A 34 AVVTG-GASGIGLATATEFA----RRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVR---HLDEMVRLAD 100 (301)
T ss_dssp EEEET-TTSHHHHHHHHHHH----HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT---CHHHHHHHHH
T ss_pred EEEeC-CCCHHHHHHHHHHH----HCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCC---CHHHHHHHHH
Confidence 55554 5545444333 344 56777766544433333444444555777777776632 6666666554
No 299
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=20.10 E-value=40 Score=32.95 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=49.5
Q ss_pred CCCEEEEcCC--CCcchHHHH-HHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHH
Q 040741 145 KKRHVITTQT--EHKCVLDSC-RHLQQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQ 220 (457)
Q Consensus 145 ~g~~vi~~~~--~h~~~~~~~-~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~ 220 (457)
.++.|++.-. .+..+..-+ .+++..|++.+++..- +....|-...=.-- ++.-. .++...|...+++++++
T Consensus 8 ~~~~~i~~~F~w~~~gi~~~~ldyL~~LGv~~I~l~Pi~~~~~~~~~~~~~gY--d~~dy---~idp~~Gt~~d~~~lv~ 82 (471)
T 1jae_A 8 SGRNSIVHLFEWKWNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERY--QPVSY---IINTRSGDESAFTDMTR 82 (471)
T ss_dssp TTCEEEEEETTCCHHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGG--SBCCS---CSEETTEEHHHHHHHHH
T ss_pred CCCCeEEEEecCCHHHHHHHHHHHHHHcCCCEEEeCccccccCCCCCCccccc--ccccc---cccCCCCCHHHHHHHHH
Confidence 3455665443 344444442 5567779998887542 11111100000000 01011 34555899999999999
Q ss_pred HHHhcCCcEEEehhh
Q 040741 221 ICKEFKIPFHTDAAQ 235 (457)
Q Consensus 221 l~~~~~v~li~D~a~ 235 (457)
-||++|+.||+|.+.
T Consensus 83 ~~h~~Gi~VilD~V~ 97 (471)
T 1jae_A 83 RCNDAGVRIYVDAVI 97 (471)
T ss_dssp HHHHTTCEEEEEECC
T ss_pred HHHHCCCEEEEEEec
Confidence 999999999999874
No 300
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=20.06 E-value=2.9e+02 Score=23.99 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=42.0
Q ss_pred EEcCCCCcchHHHHH----HHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhc
Q 040741 150 ITTQTEHKCVLDSCR----HLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEF 225 (457)
Q Consensus 150 i~~~~~h~~~~~~~~----~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~ 225 (457)
+++...++.+..... .++..|+++.....+.+..-..+.++.++..+...|++..... ....+..++.+.+++.
T Consensus 21 i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~~~~~~~~~~~ 98 (298)
T 3tb6_A 21 LTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKS--ALQTPNIGYYLNLEKN 98 (298)
T ss_dssp EESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSST--TSCCTTHHHHHHHHHT
T ss_pred EeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccc--cccCCcHHHHHHHHhc
Confidence 555555443333222 3466799998887653321112345555566676676654321 1112344555666777
Q ss_pred CCcEE
Q 040741 226 KIPFH 230 (457)
Q Consensus 226 ~v~li 230 (457)
+++++
T Consensus 99 ~iPvV 103 (298)
T 3tb6_A 99 GIPFA 103 (298)
T ss_dssp TCCEE
T ss_pred CCCEE
Confidence 88776
Done!