Query 040742
Match_columns 581
No_of_seqs 309 out of 3403
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 11:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0480 DNA replication licens 100.0 3E-108 6E-113 848.0 43.0 537 1-581 82-637 (764)
2 COG1241 MCM2 Predicted ATPase 100.0 7E-100 2E-104 819.7 52.1 520 1-581 54-586 (682)
3 KOG0478 DNA replication licens 100.0 8.8E-98 2E-102 775.4 33.5 519 2-581 191-718 (804)
4 PTZ00111 DNA replication licen 100.0 2.7E-93 5.9E-98 783.9 52.3 552 1-581 169-798 (915)
5 KOG0479 DNA replication licens 100.0 5.6E-93 1.2E-97 724.9 42.6 546 1-581 66-636 (818)
6 KOG0482 DNA replication licens 100.0 2.9E-94 6.4E-99 724.3 23.6 479 36-581 147-632 (721)
7 KOG0481 DNA replication licens 100.0 1.3E-90 2.8E-95 698.6 40.7 525 1-581 83-633 (729)
8 KOG0477 DNA replication licens 100.0 7.3E-92 1.6E-96 721.5 28.9 524 2-580 218-750 (854)
9 smart00350 MCM minichromosome 100.0 2.7E-88 5.9E-93 734.0 54.6 491 36-581 3-498 (509)
10 PF00493 MCM: MCM2/3/5 family 100.0 9E-64 1.9E-68 513.9 7.0 317 230-581 2-320 (331)
11 PRK13407 bchI magnesium chelat 99.9 4E-25 8.8E-30 225.4 23.1 256 254-581 8-300 (334)
12 TIGR00368 Mg chelatase-related 99.9 1.4E-25 3.1E-30 240.5 20.6 269 254-580 192-492 (499)
13 TIGR02030 BchI-ChlI magnesium 99.9 4.2E-25 9E-30 225.8 21.7 256 254-581 4-303 (337)
14 TIGR02442 Cob-chelat-sub cobal 99.9 8.8E-25 1.9E-29 243.2 22.7 255 254-581 4-298 (633)
15 COG0606 Predicted ATPase with 99.9 1.7E-25 3.8E-30 229.5 15.3 268 254-580 179-478 (490)
16 CHL00081 chlI Mg-protoporyphyr 99.9 9.8E-25 2.1E-29 222.8 20.0 256 254-581 17-316 (350)
17 PRK09862 putative ATP-dependen 99.9 4.6E-25 9.9E-30 235.3 17.6 266 254-580 191-485 (506)
18 TIGR02031 BchD-ChlD magnesium 99.9 2.5E-24 5.5E-29 236.8 22.0 246 260-581 1-252 (589)
19 PRK13531 regulatory ATPase Rav 99.9 2.1E-23 4.5E-28 218.4 24.2 261 244-581 10-278 (498)
20 PF01078 Mg_chelatase: Magnesi 99.9 1.3E-24 2.7E-29 204.0 12.0 169 254-438 3-202 (206)
21 COG1239 ChlI Mg-chelatase subu 99.9 3.6E-22 7.8E-27 202.7 19.7 247 253-581 16-316 (423)
22 COG0714 MoxR-like ATPases [Gen 99.9 9E-22 1.9E-26 203.6 21.7 267 244-580 14-289 (329)
23 PF07726 AAA_3: ATPase family 99.9 8.6E-22 1.9E-26 169.6 10.1 124 291-429 1-129 (131)
24 PRK13406 bchD magnesium chelat 99.9 9.1E-21 2E-25 206.6 19.3 231 259-581 8-244 (584)
25 TIGR01650 PD_CobS cobaltochela 99.8 1E-18 2.3E-23 175.7 22.2 155 291-448 66-229 (327)
26 TIGR02640 gas_vesic_GvpN gas v 99.8 5.7E-19 1.2E-23 176.5 19.3 202 291-580 23-250 (262)
27 TIGR00764 lon_rel lon-related 99.8 6.7E-18 1.5E-22 186.3 20.5 163 344-581 208-385 (608)
28 PF05496 RuvB_N: Holliday junc 99.8 6.3E-18 1.4E-22 159.7 14.3 156 248-439 18-180 (233)
29 TIGR02902 spore_lonB ATP-depen 99.7 4E-16 8.6E-21 170.5 22.2 243 227-580 37-325 (531)
30 COG2255 RuvB Holliday junction 99.7 5.4E-16 1.2E-20 149.1 15.7 154 254-445 26-188 (332)
31 PF07728 AAA_5: AAA domain (dy 99.7 8.7E-17 1.9E-21 145.2 8.8 127 291-429 1-139 (139)
32 PRK13765 ATP-dependent proteas 99.7 4.1E-15 8.9E-20 163.6 19.8 160 344-580 217-393 (637)
33 COG3829 RocR Transcriptional r 99.7 1.5E-15 3.2E-20 158.7 15.0 222 253-564 244-476 (560)
34 PRK05342 clpX ATP-dependent pr 99.7 1.7E-15 3.7E-20 159.4 15.6 158 248-405 65-240 (412)
35 COG3604 FhlA Transcriptional r 99.6 4.7E-15 1E-19 152.9 13.9 221 255-567 224-456 (550)
36 TIGR00382 clpX endopeptidase C 99.6 1.2E-14 2.5E-19 152.2 16.3 157 246-405 69-248 (413)
37 COG2204 AtoC Response regulato 99.6 1.2E-14 2.7E-19 152.3 15.1 236 251-579 138-383 (464)
38 PHA02244 ATPase-like protein 99.6 4.4E-14 9.5E-19 143.8 18.2 140 290-440 120-262 (383)
39 COG0466 Lon ATP-dependent Lon 99.6 1.9E-14 4.1E-19 154.1 13.7 179 248-454 317-511 (782)
40 CHL00181 cbbX CbbX; Provisiona 99.6 3.5E-14 7.5E-19 143.3 14.3 175 244-453 13-210 (287)
41 TIGR02974 phageshock_pspF psp 99.5 8.4E-14 1.8E-18 143.4 16.1 197 290-567 23-233 (329)
42 COG1221 PspF Transcriptional r 99.5 7.8E-14 1.7E-18 143.8 14.2 228 248-572 72-314 (403)
43 KOG2004 Mitochondrial ATP-depe 99.5 6.2E-14 1.4E-18 149.3 13.0 178 251-455 408-600 (906)
44 COG1223 Predicted ATPase (AAA+ 99.5 1.7E-14 3.8E-19 136.7 7.6 158 252-447 119-292 (368)
45 TIGR02880 cbbX_cfxQ probable R 99.5 1.1E-13 2.5E-18 139.7 13.7 224 246-571 14-257 (284)
46 PRK00080 ruvB Holliday junctio 99.5 2E-13 4.3E-18 141.4 15.0 156 254-447 25-188 (328)
47 PRK11034 clpA ATP-dependent Cl 99.5 8.6E-13 1.9E-17 148.5 20.1 216 225-453 421-667 (758)
48 COG2256 MGS1 ATPase related to 99.5 1.3E-13 2.9E-18 139.0 12.1 149 254-453 24-178 (436)
49 PRK11608 pspF phage shock prot 99.5 7E-13 1.5E-17 136.7 17.2 197 290-567 30-240 (326)
50 TIGR02329 propionate_PrpR prop 99.5 1.1E-12 2.4E-17 142.5 18.5 239 254-579 212-462 (526)
51 TIGR00635 ruvB Holliday juncti 99.5 5.7E-13 1.2E-17 136.8 14.9 156 254-447 4-167 (305)
52 PRK15424 propionate catabolism 99.5 1.7E-12 3.6E-17 140.9 18.8 226 254-566 219-464 (538)
53 TIGR02881 spore_V_K stage V sp 99.5 1E-12 2.3E-17 131.5 15.2 217 255-571 7-242 (261)
54 KOG0734 AAA+-type ATPase conta 99.4 3.4E-13 7.3E-18 139.3 10.7 166 253-453 303-485 (752)
55 PRK10787 DNA-binding ATP-depen 99.4 1.4E-12 3E-17 147.9 16.5 175 247-450 315-504 (784)
56 PRK05022 anaerobic nitric oxid 99.4 2.4E-12 5.1E-17 140.9 17.7 223 254-569 187-422 (509)
57 TIGR01817 nifA Nif-specific re 99.4 3E-12 6.6E-17 141.2 16.9 231 254-580 196-438 (534)
58 PRK11388 DNA-binding transcrip 99.4 4.5E-12 9.7E-17 142.9 17.6 229 253-579 324-563 (638)
59 TIGR02903 spore_lon_C ATP-depe 99.4 7.3E-12 1.6E-16 139.1 18.9 174 250-452 150-366 (615)
60 KOG0738 AAA+-type ATPase [Post 99.4 2.1E-13 4.5E-18 136.3 5.4 170 253-454 211-397 (491)
61 TIGR02639 ClpA ATP-dependent C 99.4 5.4E-12 1.2E-16 143.7 17.4 217 224-453 416-663 (731)
62 COG1219 ClpX ATP-dependent pro 99.4 1.2E-12 2.5E-17 127.9 9.9 159 246-405 53-229 (408)
63 TIGR00763 lon ATP-dependent pr 99.4 3.6E-12 7.7E-17 146.0 15.6 174 246-449 312-502 (775)
64 COG1222 RPT1 ATP-dependent 26S 99.4 2.4E-12 5.2E-17 128.0 11.8 133 291-458 187-337 (406)
65 COG0542 clpA ATP-binding subun 99.4 1E-11 2.2E-16 137.2 17.9 210 225-453 454-706 (786)
66 PRK10820 DNA-binding transcrip 99.4 6.1E-12 1.3E-16 137.7 15.7 230 254-579 204-446 (520)
67 PF00158 Sigma54_activat: Sigm 99.4 1.2E-12 2.6E-17 121.5 8.2 133 290-431 23-164 (168)
68 TIGR03346 chaperone_ClpB ATP-d 99.3 7E-11 1.5E-15 136.6 20.3 195 245-452 556-776 (852)
69 TIGR03345 VI_ClpV1 type VI sec 99.3 6.9E-11 1.5E-15 135.7 19.9 196 244-453 556-781 (852)
70 CHL00195 ycf46 Ycf46; Provisio 99.3 1.8E-11 4E-16 131.5 14.1 159 254-453 228-406 (489)
71 CHL00095 clpC Clp protease ATP 99.3 1.5E-10 3.3E-15 133.5 22.5 218 223-453 470-733 (821)
72 PRK03992 proteasome-activating 99.3 1.2E-11 2.5E-16 130.7 12.2 130 290-450 166-313 (389)
73 PRK10923 glnG nitrogen regulat 99.3 6.4E-11 1.4E-15 129.0 17.6 198 290-568 162-372 (469)
74 PRK15429 formate hydrogenlyase 99.3 4.4E-11 9.6E-16 135.8 16.7 221 255-568 377-610 (686)
75 smart00763 AAA_PrkA PrkA AAA d 99.3 2.9E-11 6.4E-16 123.3 13.6 98 346-453 229-328 (361)
76 TIGR02915 PEP_resp_reg putativ 99.3 7.3E-11 1.6E-15 127.7 17.6 206 290-579 163-381 (445)
77 PRK05201 hslU ATP-dependent pr 99.3 7.4E-11 1.6E-15 122.1 16.6 72 246-318 7-79 (443)
78 PRK14962 DNA polymerase III su 99.3 4.4E-11 9.5E-16 128.5 14.8 145 248-436 8-174 (472)
79 PTZ00454 26S protease regulato 99.3 1.9E-11 4.1E-16 128.6 11.8 167 254-452 145-329 (398)
80 PRK11331 5-methylcytosine-spec 99.3 4.3E-11 9.2E-16 125.3 14.0 161 253-440 174-361 (459)
81 CHL00176 ftsH cell division pr 99.3 3E-11 6.5E-16 133.9 13.0 168 254-453 183-367 (638)
82 TIGR00390 hslU ATP-dependent p 99.3 5.2E-11 1.1E-15 123.2 13.1 71 247-318 5-76 (441)
83 TIGR02639 ClpA ATP-dependent C 99.3 1.1E-10 2.3E-15 133.2 16.9 210 243-539 171-405 (731)
84 PF07724 AAA_2: AAA domain (Cd 99.2 1.2E-11 2.7E-16 115.1 7.2 137 290-432 4-171 (171)
85 PRK11361 acetoacetate metaboli 99.2 1.4E-10 3.1E-15 125.9 16.6 136 290-434 167-311 (457)
86 PRK10865 protein disaggregatio 99.2 3.1E-10 6.7E-15 130.8 20.0 220 224-453 530-780 (857)
87 KOG0730 AAA+-type ATPase [Post 99.2 2E-11 4.4E-16 130.0 9.3 163 254-448 434-611 (693)
88 TIGR01242 26Sp45 26S proteasom 99.2 2.4E-11 5.1E-16 127.7 9.8 161 255-448 123-302 (364)
89 KOG0737 AAA+-type ATPase [Post 99.2 5E-12 1.1E-16 126.5 4.4 173 254-455 92-277 (386)
90 TIGR01818 ntrC nitrogen regula 99.2 3E-10 6.4E-15 123.6 18.0 206 290-579 158-376 (463)
91 KOG0739 AAA+-type ATPase [Post 99.2 1.9E-11 4.1E-16 118.3 7.0 168 254-460 133-316 (439)
92 TIGR01241 FtsH_fam ATP-depende 99.2 7.9E-11 1.7E-15 128.7 12.5 130 291-453 90-239 (495)
93 KOG0736 Peroxisome assembly fa 99.2 4.2E-11 9.2E-16 128.9 9.7 170 255-455 673-860 (953)
94 PRK14956 DNA polymerase III su 99.2 2.9E-10 6.3E-15 120.4 15.3 148 248-439 12-181 (484)
95 PTZ00361 26 proteosome regulat 99.2 6E-11 1.3E-15 125.7 10.0 162 255-449 184-364 (438)
96 PRK15115 response regulator Gl 99.2 5.7E-10 1.2E-14 120.7 17.6 136 290-434 158-302 (444)
97 COG3283 TyrR Transcriptional r 99.2 3E-10 6.5E-15 112.7 13.8 209 291-580 229-442 (511)
98 PLN03025 replication factor C 99.2 1.3E-10 2.8E-15 119.9 11.9 134 254-430 13-151 (319)
99 PRK13342 recombination factor 99.2 2.8E-10 6E-15 121.5 14.4 146 254-453 12-165 (413)
100 PF12775 AAA_7: P-loop contain 99.2 4.4E-10 9.6E-15 112.6 15.0 150 291-457 35-198 (272)
101 PRK14949 DNA polymerase III su 99.2 2.7E-10 5.8E-15 127.4 14.3 147 253-441 15-181 (944)
102 TIGR03345 VI_ClpV1 type VI sec 99.1 4.7E-10 1E-14 128.9 15.6 215 243-540 176-411 (852)
103 PRK14960 DNA polymerase III su 99.1 5.2E-10 1.1E-14 121.7 14.3 140 253-435 14-174 (702)
104 KOG2028 ATPase related to the 99.1 1.4E-10 3.1E-15 115.1 8.6 145 253-446 137-289 (554)
105 PRK14961 DNA polymerase III su 99.1 1.6E-09 3.4E-14 113.7 16.9 145 254-443 16-182 (363)
106 PRK11034 clpA ATP-dependent Cl 99.1 5.2E-10 1.1E-14 126.2 13.9 201 253-540 185-410 (758)
107 PRK07003 DNA polymerase III su 99.1 1.1E-09 2.3E-14 120.5 15.8 146 254-440 16-180 (830)
108 KOG0733 Nuclear AAA ATPase (VC 99.1 6.2E-11 1.3E-15 124.7 5.9 168 254-455 511-695 (802)
109 PRK13341 recombination factor 99.1 8E-10 1.7E-14 124.2 13.5 148 254-452 28-181 (725)
110 PRK14958 DNA polymerase III su 99.1 1.5E-09 3.2E-14 118.0 15.0 142 254-436 16-176 (509)
111 COG5271 MDN1 AAA ATPase contai 99.1 3.6E-10 7.8E-15 128.4 9.9 150 288-446 887-1042(4600)
112 KOG0733 Nuclear AAA ATPase (VC 99.1 2.7E-10 5.9E-15 120.0 8.3 171 254-453 190-375 (802)
113 CHL00206 ycf2 Ycf2; Provisiona 99.1 5.1E-10 1.1E-14 131.6 11.2 129 291-441 1632-1806(2281)
114 PRK14957 DNA polymerase III su 99.1 1.2E-09 2.5E-14 118.8 13.2 142 254-438 16-178 (546)
115 PRK07994 DNA polymerase III su 99.1 1.6E-09 3.4E-14 119.5 13.7 143 254-441 16-181 (647)
116 KOG0989 Replication factor C, 99.1 2.7E-09 5.8E-14 104.5 13.7 148 254-443 36-193 (346)
117 PRK10365 transcriptional regul 99.1 3.3E-09 7E-14 114.7 16.1 136 290-434 163-307 (441)
118 cd00009 AAA The AAA+ (ATPases 99.0 8.4E-10 1.8E-14 99.3 9.6 141 258-435 2-149 (151)
119 COG5271 MDN1 AAA ATPase contai 99.0 6.4E-10 1.4E-14 126.4 10.2 134 291-434 1545-1687(4600)
120 PRK08451 DNA polymerase III su 99.0 6.2E-09 1.4E-13 112.6 17.5 142 254-439 14-177 (535)
121 PRK14964 DNA polymerase III su 99.0 1.9E-09 4E-14 115.6 13.3 139 254-435 13-172 (491)
122 COG3284 AcoR Transcriptional a 99.0 8.9E-10 1.9E-14 117.9 10.5 136 289-434 336-480 (606)
123 PF00004 AAA: ATPase family as 99.0 1.3E-10 2.7E-15 103.4 3.5 113 292-435 1-130 (132)
124 PRK06645 DNA polymerase III su 99.0 2.7E-09 5.8E-14 115.3 14.2 138 254-435 21-184 (507)
125 PRK12323 DNA polymerase III su 99.0 1.7E-09 3.7E-14 117.4 12.7 143 254-440 16-185 (700)
126 KOG0745 Putative ATP-dependent 99.0 2.1E-09 4.5E-14 109.3 12.1 116 290-405 227-358 (564)
127 KOG0740 AAA+-type ATPase [Post 99.0 1.1E-10 2.4E-15 121.0 3.1 173 252-455 151-336 (428)
128 COG0464 SpoVK ATPases of the A 99.0 2.2E-09 4.7E-14 117.7 13.0 166 256-453 244-424 (494)
129 PRK10865 protein disaggregatio 99.0 7.7E-09 1.7E-13 119.4 18.0 164 244-453 168-355 (857)
130 TIGR03689 pup_AAA proteasome A 99.0 5.6E-10 1.2E-14 120.0 8.0 137 291-453 218-379 (512)
131 PLN00020 ribulose bisphosphate 99.0 4.4E-10 9.4E-15 113.9 6.5 140 290-453 149-312 (413)
132 COG1224 TIP49 DNA helicase TIP 99.0 1.4E-08 3.1E-13 101.1 16.8 134 354-581 292-426 (450)
133 PRK14952 DNA polymerase III su 99.0 4.2E-09 9.2E-14 115.5 14.6 149 248-438 7-177 (584)
134 KOG0731 AAA+-type ATPase conta 99.0 1.4E-09 3.1E-14 119.5 10.7 167 253-457 310-496 (774)
135 TIGR01243 CDC48 AAA family ATP 99.0 3E-09 6.5E-14 121.7 13.5 162 254-449 453-632 (733)
136 PRK10733 hflB ATP-dependent me 99.0 2.5E-09 5.4E-14 120.0 12.3 129 291-452 187-335 (644)
137 PRK08691 DNA polymerase III su 99.0 9.3E-09 2E-13 113.1 15.8 138 254-434 16-174 (709)
138 PRK05896 DNA polymerase III su 99.0 2.4E-09 5.3E-14 116.4 11.2 143 247-431 9-172 (605)
139 COG0465 HflB ATP-dependent Zn 99.0 2.4E-09 5.3E-14 115.6 10.6 167 253-457 149-334 (596)
140 PRK12402 replication factor C 99.0 1.7E-08 3.7E-13 105.0 16.6 47 254-314 15-61 (337)
141 PRK05563 DNA polymerase III su 99.0 9.4E-09 2E-13 113.2 15.0 146 245-435 7-175 (559)
142 TIGR03420 DnaA_homol_Hda DnaA 99.0 7E-09 1.5E-13 101.5 12.6 171 291-579 40-220 (226)
143 TIGR03346 chaperone_ClpB ATP-d 98.9 4E-09 8.7E-14 122.1 12.3 212 246-540 165-397 (852)
144 PRK14955 DNA polymerase III su 98.9 6.2E-09 1.3E-13 110.5 12.7 47 254-314 16-63 (397)
145 PRK08903 DnaA regulatory inact 98.9 2.2E-08 4.8E-13 98.1 15.7 114 291-446 44-164 (227)
146 PRK14951 DNA polymerase III su 98.9 8.2E-09 1.8E-13 113.7 13.8 143 254-441 16-186 (618)
147 CHL00095 clpC Clp protease ATP 98.9 7.4E-09 1.6E-13 119.6 13.9 202 252-541 177-403 (821)
148 PRK14963 DNA polymerase III su 98.9 1.5E-08 3.3E-13 109.8 15.2 153 248-443 8-179 (504)
149 PHA02544 44 clamp loader, smal 98.9 2.2E-08 4.8E-13 103.3 15.6 148 254-451 21-172 (316)
150 PRK00440 rfc replication facto 98.9 2E-08 4.4E-13 103.6 15.4 133 255-431 18-155 (319)
151 PRK14969 DNA polymerase III su 98.9 1E-08 2.2E-13 112.1 12.4 139 254-437 16-177 (527)
152 PRK07764 DNA polymerase III su 98.9 1.4E-08 3E-13 115.7 13.6 141 254-438 15-179 (824)
153 PRK14965 DNA polymerase III su 98.9 2.3E-08 5.1E-13 110.6 14.4 139 254-436 16-176 (576)
154 PRK14959 DNA polymerase III su 98.9 2E-08 4.2E-13 110.0 13.5 144 254-440 16-180 (624)
155 TIGR02928 orc1/cdc6 family rep 98.9 1.8E-08 3.9E-13 106.1 12.8 50 254-313 15-64 (365)
156 PRK07133 DNA polymerase III su 98.9 3.2E-08 6.9E-13 109.9 14.9 139 254-437 18-176 (725)
157 PRK06647 DNA polymerase III su 98.9 1.5E-08 3.3E-13 111.2 12.2 140 254-437 16-177 (563)
158 PRK00411 cdc6 cell division co 98.9 3.6E-08 7.7E-13 105.0 14.7 50 254-313 30-79 (394)
159 PTZ00112 origin recognition co 98.8 2E-08 4.4E-13 111.1 12.2 176 243-448 739-945 (1164)
160 KOG0652 26S proteasome regulat 98.8 6.5E-09 1.4E-13 99.1 7.0 137 286-457 202-356 (424)
161 COG1067 LonB Predicted ATP-dep 98.8 7.6E-08 1.6E-12 106.0 16.3 186 325-581 191-393 (647)
162 KOG0727 26S proteasome regulat 98.8 1.3E-08 2.9E-13 96.6 8.5 126 291-447 191-334 (408)
163 PRK14953 DNA polymerase III su 98.8 3.6E-08 7.9E-13 106.6 12.9 137 254-435 16-175 (486)
164 TIGR02397 dnaX_nterm DNA polym 98.8 6.7E-08 1.4E-12 101.4 14.6 153 254-450 14-187 (355)
165 PRK07940 DNA polymerase III su 98.8 3.1E-08 6.7E-13 104.2 11.9 158 253-443 4-180 (394)
166 PRK04195 replication factor C 98.8 7.1E-08 1.5E-12 105.1 14.9 153 254-452 14-173 (482)
167 PRK06305 DNA polymerase III su 98.8 1.4E-07 3.1E-12 101.3 17.0 145 254-442 17-183 (451)
168 KOG1942 DNA helicase, TBP-inte 98.8 1.5E-07 3.3E-12 91.3 15.1 135 354-581 297-432 (456)
169 PRK09111 DNA polymerase III su 98.8 1.1E-07 2.4E-12 104.9 16.1 138 254-435 24-188 (598)
170 PF05673 DUF815: Protein of un 98.8 1.5E-07 3.2E-12 90.9 14.7 164 254-454 27-209 (249)
171 PRK14954 DNA polymerase III su 98.8 6.4E-08 1.4E-12 107.0 13.9 111 253-378 15-153 (620)
172 KOG0735 AAA+-type ATPase [Post 98.7 2.3E-08 4.9E-13 107.3 8.5 166 255-453 668-849 (952)
173 PRK06620 hypothetical protein; 98.7 2E-07 4.3E-12 90.3 14.3 24 291-314 46-69 (214)
174 PRK14950 DNA polymerase III su 98.7 1.1E-07 2.4E-12 105.7 14.2 114 248-378 10-146 (585)
175 PF12774 AAA_6: Hydrolytic ATP 98.7 2.6E-07 5.5E-12 90.2 14.8 118 291-431 34-161 (231)
176 PRK14970 DNA polymerase III su 98.7 4.3E-07 9.3E-12 95.7 17.8 134 254-430 17-160 (367)
177 PRK14971 DNA polymerase III su 98.7 2.2E-07 4.8E-12 103.3 15.0 141 254-436 17-178 (614)
178 PRK08084 DNA replication initi 98.7 2.1E-07 4.5E-12 91.7 12.2 24 291-314 47-70 (235)
179 PRK06893 DNA replication initi 98.7 2.2E-07 4.8E-12 91.1 12.0 120 291-447 41-169 (229)
180 KOG1051 Chaperone HSP104 and r 98.7 1.2E-07 2.7E-12 106.6 11.3 148 243-405 551-711 (898)
181 PRK08727 hypothetical protein; 98.7 4.9E-07 1.1E-11 88.9 14.4 118 291-447 43-170 (233)
182 PRK14948 DNA polymerase III su 98.6 3.4E-07 7.3E-12 101.8 13.9 141 254-437 16-179 (620)
183 KOG0742 AAA+-type ATPase [Post 98.6 6.5E-08 1.4E-12 97.8 7.4 164 255-457 356-533 (630)
184 COG2812 DnaX DNA polymerase II 98.6 1.3E-07 2.9E-12 101.2 10.2 151 245-436 7-176 (515)
185 COG1474 CDC6 Cdc6-related prot 98.6 1.6E-07 3.5E-12 97.8 10.4 198 291-581 44-259 (366)
186 PRK09087 hypothetical protein; 98.6 4.1E-07 8.9E-12 88.8 12.2 114 291-447 46-161 (226)
187 TIGR01243 CDC48 AAA family ATP 98.6 1.3E-07 2.8E-12 108.4 9.9 127 291-449 214-356 (733)
188 TIGR00362 DnaA chromosomal rep 98.6 1.8E-07 3.9E-12 99.9 9.8 135 291-453 138-282 (405)
189 KOG0991 Replication factor C, 98.6 4.4E-08 9.6E-13 92.2 3.8 162 245-456 18-186 (333)
190 KOG0744 AAA+-type ATPase [Post 98.6 4E-07 8.6E-12 89.8 10.4 135 290-453 178-341 (423)
191 PRK00149 dnaA chromosomal repl 98.5 9.4E-08 2E-12 103.4 6.2 134 291-452 150-293 (450)
192 TIGR02688 conserved hypothetic 98.5 5.7E-07 1.2E-11 93.4 10.9 164 242-433 173-346 (449)
193 PRK12422 chromosomal replicati 98.5 2.3E-07 5.1E-12 99.4 8.1 128 291-447 143-279 (445)
194 KOG0728 26S proteasome regulat 98.5 1.8E-07 3.9E-12 89.0 6.1 132 291-457 183-332 (404)
195 PF06068 TIP49: TIP49 C-termin 98.5 5.6E-07 1.2E-11 91.4 9.8 53 252-315 22-76 (398)
196 KOG0743 AAA+-type ATPase [Post 98.5 5.3E-07 1.2E-11 93.3 8.8 169 255-454 202-385 (457)
197 PRK14086 dnaA chromosomal repl 98.5 3.4E-07 7.3E-12 100.0 7.7 132 291-451 316-458 (617)
198 PHA01747 putative ATP-dependen 98.4 3.9E-06 8.4E-11 84.8 13.9 168 245-431 150-337 (425)
199 PF14532 Sigma54_activ_2: Sigm 98.4 3.2E-07 6.9E-12 82.5 5.6 108 291-434 23-133 (138)
200 PRK14087 dnaA chromosomal repl 98.4 2.5E-07 5.4E-12 99.4 4.9 137 291-453 143-289 (450)
201 smart00382 AAA ATPases associa 98.4 3.9E-07 8.4E-12 81.0 5.4 128 291-435 4-144 (148)
202 PRK09112 DNA polymerase III su 98.4 1.9E-06 4.1E-11 89.5 11.2 48 254-314 23-70 (351)
203 PF00308 Bac_DnaA: Bacterial d 98.4 1E-06 2.2E-11 85.7 8.5 172 291-569 36-218 (219)
204 COG0542 clpA ATP-binding subun 98.4 4.6E-06 1E-10 93.0 14.3 206 252-541 169-395 (786)
205 PRK07471 DNA polymerase III su 98.4 3.1E-06 6.7E-11 88.4 12.3 46 254-313 19-65 (365)
206 PF13337 Lon_2: Putative ATP-d 98.4 8.3E-06 1.8E-10 85.4 15.2 169 242-440 172-351 (457)
207 COG4650 RtcR Sigma54-dependent 98.4 9.7E-08 2.1E-12 92.7 0.8 113 289-404 208-332 (531)
208 PRK14088 dnaA chromosomal repl 98.4 4.6E-07 1E-11 97.3 6.0 136 291-453 132-277 (440)
209 KOG0726 26S proteasome regulat 98.4 2.1E-07 4.6E-12 90.3 3.0 132 291-457 221-370 (440)
210 KOG0741 AAA+-type ATPase [Post 98.4 1.4E-07 3E-12 98.4 1.7 129 291-447 258-409 (744)
211 KOG1808 AAA ATPase containing 98.3 8.6E-07 1.9E-11 105.9 8.1 147 290-445 441-593 (1856)
212 PRK05642 DNA replication initi 98.3 4.5E-06 9.7E-11 82.1 11.8 71 291-377 47-124 (234)
213 COG0470 HolB ATPase involved i 98.3 1.7E-06 3.6E-11 89.4 9.0 141 255-436 2-166 (325)
214 PRK05564 DNA polymerase III su 98.3 6.2E-06 1.4E-10 84.9 13.2 140 254-439 4-153 (313)
215 COG2607 Predicted ATPase (AAA+ 98.3 4E-06 8.8E-11 79.7 10.5 167 255-455 61-242 (287)
216 PRK07399 DNA polymerase III su 98.3 4.3E-06 9.4E-11 85.6 11.7 47 254-313 4-50 (314)
217 KOG0651 26S proteasome regulat 98.3 1E-06 2.2E-11 86.6 5.8 127 290-446 167-310 (388)
218 KOG0730 AAA+-type ATPase [Post 98.3 1E-06 2.3E-11 94.6 6.1 136 290-457 219-369 (693)
219 PRK15455 PrkA family serine pr 98.3 1.5E-06 3.2E-11 93.4 7.2 99 346-454 248-348 (644)
220 PRK08058 DNA polymerase III su 98.3 3.8E-06 8.3E-11 86.9 9.6 141 255-441 6-172 (329)
221 PF13177 DNA_pol3_delta2: DNA 98.2 1.4E-06 3E-11 80.6 5.7 133 258-435 1-158 (162)
222 COG1220 HslU ATP-dependent pro 98.1 2.8E-06 6.2E-11 84.4 5.4 83 248-331 9-93 (444)
223 TIGR03015 pepcterm_ATPase puta 98.1 5.4E-05 1.2E-09 76.0 14.4 45 523-580 215-259 (269)
224 TIGR00678 holB DNA polymerase 98.1 1.7E-05 3.7E-10 75.2 9.2 124 291-443 16-159 (188)
225 KOG0729 26S proteasome regulat 98.1 3.5E-06 7.5E-11 81.0 4.1 134 291-457 213-362 (435)
226 PRK08181 transposase; Validate 98.0 1.1E-06 2.3E-11 87.8 0.5 116 291-429 108-230 (269)
227 KOG0732 AAA+-type ATPase conta 98.0 1.2E-05 2.7E-10 91.5 8.6 170 253-458 264-453 (1080)
228 TIGR02653 Lon_rel_chp conserve 98.0 0.00012 2.6E-09 80.0 14.4 166 242-434 180-354 (675)
229 PF14551 MCM_N: MCM N-terminal 98.0 5.3E-06 1.1E-10 72.7 3.2 53 1-54 54-121 (121)
230 PRK04132 replication factor C 98.0 4.4E-05 9.6E-10 87.0 11.3 130 290-453 565-703 (846)
231 COG5245 DYN1 Dynein, heavy cha 97.9 5.4E-05 1.2E-09 87.3 11.5 146 291-452 1496-1658(3164)
232 PRK12377 putative replication 97.9 2.6E-06 5.6E-11 84.0 0.6 113 291-429 103-222 (248)
233 PF00910 RNA_helicase: RNA hel 97.9 1.2E-05 2.6E-10 68.8 4.5 98 292-403 1-106 (107)
234 PF08298 AAA_PrkA: PrkA AAA do 97.9 2E-05 4.3E-10 80.2 6.3 98 346-453 226-325 (358)
235 PRK08769 DNA polymerase III su 97.9 8.6E-05 1.9E-09 76.0 10.9 135 259-436 9-170 (319)
236 PRK06526 transposase; Provisio 97.9 1.9E-06 4.1E-11 85.5 -1.3 100 290-409 99-205 (254)
237 COG0593 DnaA ATPase involved i 97.9 9.3E-05 2E-09 77.4 10.7 23 291-313 115-137 (408)
238 PRK05707 DNA polymerase III su 97.8 3.4E-05 7.4E-10 79.5 6.8 122 291-441 24-168 (328)
239 PF01695 IstB_IS21: IstB-like 97.7 3.3E-06 7.1E-11 79.3 -2.3 116 291-429 49-171 (178)
240 TIGR00602 rad24 checkpoint pro 97.7 0.00068 1.5E-08 75.4 14.8 63 244-315 74-136 (637)
241 PRK08116 hypothetical protein; 97.6 9.4E-06 2E-10 81.4 -0.4 98 291-405 116-221 (268)
242 PRK09183 transposase/IS protei 97.6 1.1E-05 2.4E-10 80.5 -0.2 119 290-429 103-228 (259)
243 KOG2035 Replication factor C, 97.6 0.0018 3.8E-08 63.3 14.1 71 355-453 129-200 (351)
244 PRK06835 DNA replication prote 97.6 1.4E-05 2.9E-10 82.3 -0.3 114 291-429 185-305 (329)
245 COG1484 DnaC DNA replication p 97.6 2.2E-05 4.8E-10 78.0 0.8 99 291-410 107-214 (254)
246 KOG1969 DNA replication checkp 97.6 0.00033 7.2E-09 76.5 9.6 80 291-377 328-412 (877)
247 PRK06871 DNA polymerase III su 97.5 0.00072 1.6E-08 69.4 11.3 138 260-441 8-169 (325)
248 PF06309 Torsin: Torsin; Inte 97.5 0.00018 4E-09 62.4 5.7 63 245-314 16-78 (127)
249 KOG0736 Peroxisome assembly fa 97.5 0.00026 5.6E-09 77.7 7.6 148 288-457 430-581 (953)
250 PRK07952 DNA replication prote 97.5 3.1E-05 6.7E-10 76.2 0.6 97 291-405 101-205 (244)
251 PRK06964 DNA polymerase III su 97.5 0.00048 1E-08 71.2 9.3 61 353-441 132-194 (342)
252 KOG0990 Replication factor C, 97.5 7.1E-05 1.5E-09 74.3 3.0 135 291-455 64-206 (360)
253 PRK06921 hypothetical protein; 97.4 1.9E-05 4.1E-10 79.1 -1.6 24 291-314 119-142 (266)
254 COG3854 SpoIIIAA ncharacterize 97.4 0.00027 5.9E-09 67.1 5.5 28 288-315 136-163 (308)
255 PF05621 TniB: Bacterial TniB 97.4 0.0036 7.8E-08 62.8 13.6 58 248-315 28-87 (302)
256 PRK06090 DNA polymerase III su 97.4 0.0011 2.4E-08 67.9 10.2 137 260-438 9-167 (319)
257 PHA02774 E1; Provisional 97.3 0.0021 4.6E-08 69.7 12.6 111 291-436 436-553 (613)
258 PRK08699 DNA polymerase III su 97.3 0.00057 1.2E-08 70.4 8.1 59 352-437 112-171 (325)
259 PRK07993 DNA polymerase III su 97.3 0.00054 1.2E-08 70.9 7.7 121 291-441 26-169 (334)
260 PF13335 Mg_chelatase_2: Magne 97.3 0.00085 1.8E-08 56.0 6.8 63 499-580 27-89 (96)
261 PF13173 AAA_14: AAA domain 97.3 0.00028 6.2E-09 62.4 4.1 80 291-378 4-86 (128)
262 COG1618 Predicted nucleotide k 97.2 0.0032 6.9E-08 56.8 10.1 25 290-314 6-30 (179)
263 PF03266 NTPase_1: NTPase; In 97.2 0.00068 1.5E-08 63.0 5.7 23 291-313 1-23 (168)
264 KOG2170 ATPase of the AAA+ sup 97.1 0.00018 3.9E-09 71.0 1.0 122 245-377 73-203 (344)
265 PHA02624 large T antigen; Prov 97.0 0.0022 4.7E-08 69.9 8.9 112 291-437 433-561 (647)
266 PF03215 Rad17: Rad17 cell cyc 96.9 0.019 4.1E-07 62.8 14.5 28 291-318 47-74 (519)
267 TIGR01613 primase_Cterm phage/ 96.8 0.01 2.3E-07 60.7 11.7 122 291-435 78-201 (304)
268 PF13654 AAA_32: AAA domain; P 96.8 0.00088 1.9E-08 72.9 3.3 180 325-581 299-500 (509)
269 PRK05917 DNA polymerase III su 96.8 0.002 4.4E-08 64.8 5.5 118 291-437 21-153 (290)
270 KOG1514 Origin recognition com 96.7 0.0038 8.3E-08 68.3 7.7 164 249-447 391-584 (767)
271 PF05272 VirE: Virulence-assoc 96.7 0.0016 3.5E-08 62.1 3.8 95 290-405 53-150 (198)
272 KOG0735 AAA+-type ATPase [Post 96.6 0.0015 3.3E-08 71.2 3.3 142 290-456 432-590 (952)
273 cd01120 RecA-like_NTPases RecA 96.6 0.0037 8E-08 57.0 5.5 23 291-313 1-23 (165)
274 PF05729 NACHT: NACHT domain 96.6 0.0058 1.3E-07 55.9 6.7 23 291-313 2-24 (166)
275 PF13671 AAA_33: AAA domain; P 96.5 0.002 4.3E-08 57.8 3.1 23 292-314 2-24 (143)
276 PF13207 AAA_17: AAA domain; P 96.5 0.002 4.4E-08 56.0 3.0 25 292-316 2-26 (121)
277 KOG2680 DNA helicase TIP49, TB 96.4 0.058 1.3E-06 53.5 12.8 103 291-442 254-362 (454)
278 KOG2545 Conserved membrane pro 96.4 0.52 1.1E-05 48.8 20.0 232 259-580 283-528 (543)
279 PF03969 AFG1_ATPase: AFG1-lik 96.4 0.00089 1.9E-08 69.9 0.4 25 291-315 64-88 (362)
280 PRK07132 DNA polymerase III su 96.4 0.02 4.2E-07 58.3 10.1 118 291-440 20-151 (299)
281 PHA00729 NTP-binding motif con 96.4 0.0027 5.8E-08 61.4 3.3 25 290-314 18-42 (226)
282 PF00519 PPV_E1_C: Papillomavi 96.3 0.018 3.9E-07 59.4 9.0 113 291-436 264-381 (432)
283 PRK13947 shikimate kinase; Pro 96.3 0.0043 9.3E-08 57.6 4.0 28 291-318 3-30 (171)
284 PF13191 AAA_16: AAA ATPase do 96.2 0.0041 8.9E-08 58.3 3.8 48 256-314 2-49 (185)
285 PRK04296 thymidine kinase; Pro 96.2 0.015 3.3E-07 55.2 7.3 23 291-313 4-26 (190)
286 PRK08118 topology modulation p 96.2 0.0049 1.1E-07 57.2 3.8 27 291-317 3-29 (167)
287 KOG3347 Predicted nucleotide k 96.2 0.004 8.6E-08 55.3 2.9 28 290-317 8-35 (176)
288 PRK14532 adenylate kinase; Pro 96.1 0.0056 1.2E-07 57.9 4.3 26 291-316 2-27 (188)
289 PF13604 AAA_30: AAA domain; P 96.1 0.012 2.6E-07 56.2 6.5 88 291-378 20-119 (196)
290 cd00464 SK Shikimate kinase (S 96.1 0.0052 1.1E-07 55.9 3.8 28 291-318 1-28 (154)
291 PRK00131 aroK shikimate kinase 96.1 0.0056 1.2E-07 56.8 4.0 28 291-318 6-33 (175)
292 PRK05818 DNA polymerase III su 96.1 0.02 4.3E-07 56.5 7.7 119 291-437 9-146 (261)
293 PF01443 Viral_helicase1: Vira 96.1 0.014 3.1E-07 57.0 6.9 22 292-313 1-22 (234)
294 PRK00625 shikimate kinase; Pro 96.1 0.0064 1.4E-07 56.8 4.0 28 291-318 2-29 (173)
295 COG1126 GlnQ ABC-type polar am 96.0 0.0016 3.4E-08 61.7 -0.4 49 257-321 12-63 (240)
296 PRK03839 putative kinase; Prov 96.0 0.0069 1.5E-07 56.9 4.0 27 291-317 2-28 (180)
297 TIGR01313 therm_gnt_kin carboh 96.0 0.0082 1.8E-07 55.3 4.3 29 292-321 1-29 (163)
298 COG0563 Adk Adenylate kinase a 95.9 0.0062 1.3E-07 57.1 3.4 24 291-314 2-25 (178)
299 PRK13949 shikimate kinase; Pro 95.9 0.0083 1.8E-07 55.8 4.1 27 291-317 3-29 (169)
300 KOG3595 Dyneins, heavy chain [ 95.9 0.017 3.8E-07 70.7 7.7 149 291-457 129-291 (1395)
301 PF13245 AAA_19: Part of AAA d 95.8 0.014 3E-07 46.5 4.4 23 291-313 12-35 (76)
302 PF13238 AAA_18: AAA domain; P 95.8 0.0068 1.5E-07 53.0 2.9 22 292-313 1-22 (129)
303 TIGR01359 UMP_CMP_kin_fam UMP- 95.8 0.0097 2.1E-07 55.9 4.1 24 292-315 2-25 (183)
304 cd02019 NK Nucleoside/nucleoti 95.8 0.0085 1.8E-07 46.7 3.1 22 292-313 2-23 (69)
305 PRK14530 adenylate kinase; Pro 95.8 0.0097 2.1E-07 57.7 4.2 26 291-316 5-30 (215)
306 TIGR00150 HI0065_YjeE ATPase, 95.8 0.017 3.6E-07 51.3 5.2 25 291-315 24-48 (133)
307 PRK07261 topology modulation p 95.8 0.0099 2.1E-07 55.4 4.0 24 291-314 2-25 (171)
308 COG4930 Predicted ATP-dependen 95.7 0.036 7.9E-07 56.9 7.9 153 223-405 172-330 (683)
309 PRK10078 ribose 1,5-bisphospho 95.7 0.01 2.3E-07 56.0 3.8 30 291-320 4-33 (186)
310 PTZ00088 adenylate kinase 1; P 95.7 0.014 3E-07 57.1 4.7 32 290-321 7-38 (229)
311 cd02021 GntK Gluconate kinase 95.6 0.012 2.6E-07 53.3 3.8 23 292-314 2-24 (150)
312 PRK06762 hypothetical protein; 95.6 0.013 2.8E-07 54.1 4.1 27 291-317 4-30 (166)
313 COG0703 AroK Shikimate kinase 95.6 0.012 2.5E-07 54.3 3.6 28 291-318 4-31 (172)
314 PF13086 AAA_11: AAA domain; P 95.5 0.014 3E-07 56.7 4.3 22 292-313 20-41 (236)
315 PRK06217 hypothetical protein; 95.5 0.014 3.1E-07 55.0 4.2 26 291-316 3-28 (183)
316 PRK14531 adenylate kinase; Pro 95.5 0.015 3.2E-07 54.9 4.2 25 291-315 4-28 (183)
317 PF05970 PIF1: PIF1-like helic 95.5 0.028 6E-07 59.2 6.6 25 291-315 24-48 (364)
318 COG4619 ABC-type uncharacteriz 95.5 0.017 3.8E-07 52.5 4.3 25 291-315 31-55 (223)
319 PRK07276 DNA polymerase III su 95.5 0.075 1.6E-06 53.7 9.2 56 353-436 104-161 (290)
320 PRK05057 aroK shikimate kinase 95.5 0.016 3.4E-07 54.1 4.1 28 291-318 6-33 (172)
321 cd01428 ADK Adenylate kinase ( 95.4 0.015 3.3E-07 55.0 4.1 24 292-315 2-25 (194)
322 cd01130 VirB11-like_ATPase Typ 95.4 0.025 5.5E-07 53.4 5.5 25 291-315 27-51 (186)
323 TIGR01360 aden_kin_iso1 adenyl 95.4 0.014 3E-07 55.0 3.5 25 291-315 5-29 (188)
324 PRK08939 primosomal protein Dn 95.4 0.011 2.4E-07 60.4 2.9 23 291-313 158-180 (306)
325 PF09848 DUF2075: Uncharacteri 95.3 0.007 1.5E-07 63.4 1.5 23 291-313 3-25 (352)
326 TIGR02768 TraA_Ti Ti-type conj 95.3 0.037 8E-07 63.6 7.4 81 291-376 370-463 (744)
327 COG3267 ExeA Type II secretory 95.3 0.084 1.8E-06 51.5 8.6 47 521-580 220-266 (269)
328 TIGR01447 recD exodeoxyribonuc 95.3 0.056 1.2E-06 60.2 8.6 22 291-312 162-183 (586)
329 cd00227 CPT Chloramphenicol (C 95.3 0.015 3.2E-07 54.4 3.4 26 291-316 4-29 (175)
330 PF13401 AAA_22: AAA domain; P 95.2 0.013 2.8E-07 51.6 2.7 23 291-313 6-28 (131)
331 TIGR01448 recD_rel helicase, p 95.2 0.037 7.9E-07 63.4 6.8 23 291-313 340-362 (720)
332 PRK13900 type IV secretion sys 95.2 0.027 5.9E-07 58.3 5.2 25 291-315 162-186 (332)
333 PRK14526 adenylate kinase; Pro 95.2 0.021 4.5E-07 55.1 4.1 26 291-316 2-27 (211)
334 PRK14528 adenylate kinase; Pro 95.1 0.022 4.8E-07 53.8 4.1 27 291-317 3-29 (186)
335 PHA02530 pseT polynucleotide k 95.1 0.023 4.9E-07 58.0 4.4 31 291-321 4-34 (300)
336 PRK13946 shikimate kinase; Pro 95.1 0.025 5.3E-07 53.4 4.3 29 290-318 11-39 (184)
337 cd02020 CMPK Cytidine monophos 95.1 0.023 5E-07 51.0 3.9 27 292-318 2-28 (147)
338 PRK13948 shikimate kinase; Pro 95.1 0.026 5.5E-07 53.2 4.2 28 291-318 12-39 (182)
339 TIGR02322 phosphon_PhnN phosph 95.0 0.019 4.2E-07 53.7 3.3 24 291-314 3-26 (179)
340 PRK03731 aroL shikimate kinase 95.0 0.024 5.2E-07 52.6 4.0 28 291-318 4-31 (171)
341 PRK02496 adk adenylate kinase; 95.0 0.024 5.2E-07 53.4 4.0 26 291-316 3-28 (184)
342 PF13555 AAA_29: P-loop contai 95.0 0.025 5.4E-07 42.8 3.2 24 291-314 25-48 (62)
343 TIGR01351 adk adenylate kinase 95.0 0.025 5.4E-07 54.6 3.9 24 292-315 2-25 (210)
344 PLN02200 adenylate kinase fami 94.9 0.038 8.3E-07 54.3 5.2 26 290-315 44-69 (234)
345 PRK08233 hypothetical protein; 94.9 0.022 4.8E-07 53.3 3.3 25 291-315 5-29 (182)
346 PF01637 Arch_ATPase: Archaeal 94.9 0.032 6.9E-07 54.1 4.5 44 257-314 2-45 (234)
347 PRK14709 hypothetical protein; 94.8 0.39 8.4E-06 52.2 13.1 125 290-436 206-332 (469)
348 PRK00279 adk adenylate kinase; 94.8 0.033 7.1E-07 54.0 4.3 27 291-317 2-28 (215)
349 TIGR01618 phage_P_loop phage n 94.8 0.017 3.6E-07 56.0 2.2 21 290-310 13-33 (220)
350 PRK05439 pantothenate kinase; 94.7 0.052 1.1E-06 55.4 5.8 82 222-314 26-111 (311)
351 PF08477 Miro: Miro-like prote 94.7 0.027 5.9E-07 48.5 3.3 24 291-314 1-24 (119)
352 COG1120 FepC ABC-type cobalami 94.7 0.0075 1.6E-07 59.5 -0.5 33 291-323 30-65 (258)
353 PF13521 AAA_28: AAA domain; P 94.7 0.026 5.7E-07 51.9 3.2 21 292-312 2-22 (163)
354 PRK13851 type IV secretion sys 94.6 0.046 1E-06 56.7 5.2 25 291-315 164-188 (344)
355 COG1102 Cmk Cytidylate kinase 94.6 0.034 7.4E-07 50.3 3.5 31 292-322 3-33 (179)
356 COG1116 TauB ABC-type nitrate/ 94.6 0.058 1.3E-06 52.5 5.3 32 291-322 31-65 (248)
357 COG3839 MalK ABC-type sugar tr 94.5 0.028 6.1E-07 57.7 3.3 34 291-324 31-67 (338)
358 PRK14527 adenylate kinase; Pro 94.5 0.03 6.5E-07 53.1 3.3 24 291-314 8-31 (191)
359 TIGR03263 guanyl_kin guanylate 94.5 0.027 5.8E-07 52.7 2.9 25 291-315 3-27 (180)
360 TIGR00554 panK_bact pantothena 94.5 0.061 1.3E-06 54.4 5.6 25 290-314 63-87 (290)
361 COG4088 Predicted nucleotide k 94.5 0.023 4.9E-07 53.5 2.3 27 291-317 3-29 (261)
362 TIGR01420 pilT_fam pilus retra 94.5 0.12 2.5E-06 54.0 8.0 24 291-314 124-147 (343)
363 cd00071 GMPK Guanosine monopho 94.5 0.032 6.9E-07 49.9 3.2 25 292-316 2-26 (137)
364 PRK10536 hypothetical protein; 94.5 0.055 1.2E-06 53.4 4.9 22 291-312 76-97 (262)
365 PRK06547 hypothetical protein; 94.4 0.073 1.6E-06 49.6 5.6 24 291-314 17-40 (172)
366 COG3378 Phage associated DNA p 94.4 0.23 5.1E-06 54.0 10.1 134 291-447 232-368 (517)
367 COG1117 PstB ABC-type phosphat 94.4 0.023 5.1E-07 53.8 2.1 23 291-313 35-57 (253)
368 cd02027 APSK Adenosine 5'-phos 94.4 0.03 6.5E-07 50.9 2.8 22 292-313 2-23 (149)
369 PRK14529 adenylate kinase; Pro 94.4 0.034 7.4E-07 54.0 3.3 25 291-315 2-26 (223)
370 COG1220 HslU ATP-dependent pro 94.3 0.2 4.4E-06 50.7 8.6 138 353-561 250-401 (444)
371 PRK00300 gmk guanylate kinase; 94.3 0.035 7.5E-07 53.2 3.3 24 291-314 7-30 (205)
372 PRK08154 anaerobic benzoate ca 94.3 0.11 2.4E-06 53.2 7.2 29 290-318 134-162 (309)
373 PLN02459 probable adenylate ki 94.3 0.048 1E-06 54.1 4.2 26 290-315 30-55 (261)
374 PRK13764 ATPase; Provisional 94.3 0.033 7E-07 61.8 3.3 24 291-314 259-282 (602)
375 TIGR03574 selen_PSTK L-seryl-t 94.3 0.029 6.4E-07 55.6 2.7 23 292-314 2-24 (249)
376 PRK04040 adenylate kinase; Pro 94.2 0.035 7.6E-07 52.6 3.0 24 291-314 4-27 (188)
377 PLN02674 adenylate kinase 94.2 0.048 1E-06 53.7 4.0 25 291-315 33-57 (244)
378 PRK12339 2-phosphoglycerate ki 94.2 0.051 1.1E-06 51.8 4.0 30 291-320 5-34 (197)
379 TIGR02788 VirB11 P-type DNA tr 94.1 0.068 1.5E-06 54.8 5.1 25 291-315 146-170 (308)
380 PRK13826 Dtr system oriT relax 94.1 0.22 4.9E-06 58.9 9.8 82 291-377 399-493 (1102)
381 PRK01184 hypothetical protein; 94.1 0.054 1.2E-06 51.0 3.9 26 291-317 3-28 (184)
382 PRK04182 cytidylate kinase; Pr 94.1 0.055 1.2E-06 50.4 4.0 28 291-318 2-29 (180)
383 cd01131 PilT Pilus retraction 94.0 0.045 9.8E-07 52.3 3.4 24 291-314 3-26 (198)
384 PRK05541 adenylylsulfate kinas 94.0 0.038 8.2E-07 51.6 2.8 25 290-314 8-32 (176)
385 TIGR02782 TrbB_P P-type conjug 94.0 0.081 1.8E-06 54.0 5.3 24 291-314 134-157 (299)
386 PF13479 AAA_24: AAA domain 94.0 0.048 1E-06 52.8 3.5 27 290-320 4-30 (213)
387 KOG0741 AAA+-type ATPase [Post 94.0 0.023 5.1E-07 60.3 1.4 131 290-447 539-681 (744)
388 COG1936 Predicted nucleotide k 94.0 0.046 1E-06 50.1 3.1 22 291-312 2-23 (180)
389 PRK13889 conjugal transfer rel 93.9 0.079 1.7E-06 62.2 5.7 86 291-376 364-457 (988)
390 PTZ00301 uridine kinase; Provi 93.9 0.25 5.4E-06 47.6 8.2 23 291-313 5-27 (210)
391 TIGR00235 udk uridine kinase. 93.9 0.046 9.9E-07 52.6 3.1 24 291-314 8-31 (207)
392 PF00437 T2SE: Type II/IV secr 93.9 0.061 1.3E-06 54.0 4.2 87 291-381 129-223 (270)
393 cd02023 UMPK Uridine monophosp 93.9 0.047 1E-06 52.1 3.2 22 292-313 2-23 (198)
394 cd00820 PEPCK_HprK Phosphoenol 93.9 0.063 1.4E-06 45.6 3.5 20 291-310 17-36 (107)
395 TIGR02173 cyt_kin_arch cytidyl 93.8 0.064 1.4E-06 49.5 3.9 28 291-318 2-29 (171)
396 cd01129 PulE-GspE PulE/GspE Th 93.8 0.32 6.9E-06 48.7 9.1 24 291-314 82-105 (264)
397 PRK05480 uridine/cytidine kina 93.8 0.06 1.3E-06 51.8 3.7 25 290-314 7-31 (209)
398 PRK09825 idnK D-gluconate kina 93.7 0.057 1.2E-06 50.6 3.3 25 291-315 5-29 (176)
399 PF01926 MMR_HSR1: 50S ribosom 93.7 0.05 1.1E-06 46.9 2.7 21 291-311 1-21 (116)
400 COG3842 PotA ABC-type spermidi 93.7 0.019 4.2E-07 59.3 0.1 34 291-324 33-69 (352)
401 KOG2383 Predicted ATPase [Gene 93.7 0.025 5.5E-07 58.2 0.9 25 291-315 116-140 (467)
402 PF00406 ADK: Adenylate kinase 93.6 0.038 8.3E-07 50.2 2.0 21 294-314 1-21 (151)
403 cd02024 NRK1 Nicotinamide ribo 93.6 0.089 1.9E-06 49.7 4.4 25 292-316 2-26 (187)
404 PRK00889 adenylylsulfate kinas 93.6 0.052 1.1E-06 50.6 2.8 24 291-314 6-29 (175)
405 PRK05537 bifunctional sulfate 93.6 0.12 2.6E-06 57.5 6.0 51 253-315 368-418 (568)
406 PRK13833 conjugal transfer pro 93.5 0.11 2.3E-06 53.5 5.2 23 291-313 146-168 (323)
407 PRK10416 signal recognition pa 93.5 0.41 8.8E-06 49.3 9.5 24 290-313 115-138 (318)
408 PRK04220 2-phosphoglycerate ki 93.5 0.19 4.2E-06 50.8 6.9 31 290-320 93-123 (301)
409 PF06048 DUF927: Domain of unk 93.5 0.077 1.7E-06 53.8 4.1 64 291-369 195-258 (286)
410 PLN02199 shikimate kinase 93.5 0.13 2.8E-06 51.8 5.5 28 291-318 104-131 (303)
411 PRK14737 gmk guanylate kinase; 93.5 0.063 1.4E-06 50.7 3.2 25 291-315 6-30 (186)
412 COG1373 Predicted ATPase (AAA+ 93.5 0.17 3.7E-06 53.8 6.8 80 291-378 39-119 (398)
413 PF03193 DUF258: Protein of un 93.5 0.097 2.1E-06 48.0 4.3 23 291-313 37-59 (161)
414 cd01124 KaiC KaiC is a circadi 93.4 0.059 1.3E-06 50.6 3.0 21 292-312 2-22 (187)
415 COG4525 TauB ABC-type taurine 93.3 0.094 2E-06 49.1 3.9 24 291-314 33-56 (259)
416 PF00005 ABC_tran: ABC transpo 93.3 0.046 1E-06 48.5 1.9 23 291-313 13-35 (137)
417 cd04177 RSR1 RSR1 subgroup. R 93.3 0.072 1.6E-06 49.0 3.3 23 290-312 2-24 (168)
418 PRK14722 flhF flagellar biosyn 93.3 0.2 4.4E-06 52.4 6.8 23 290-312 138-160 (374)
419 COG1485 Predicted ATPase [Gene 93.2 0.031 6.7E-07 56.9 0.7 25 291-315 67-91 (367)
420 PF08303 tRNA_lig_kinase: tRNA 93.2 0.16 3.5E-06 46.3 5.2 74 295-378 5-79 (168)
421 PRK13894 conjugal transfer ATP 93.1 0.14 3E-06 52.7 5.3 23 291-313 150-172 (319)
422 PF00625 Guanylate_kin: Guanyl 93.1 0.1 2.3E-06 49.0 4.1 27 291-317 4-30 (183)
423 COG1125 OpuBA ABC-type proline 93.1 0.11 2.3E-06 50.8 4.0 35 291-325 29-66 (309)
424 PRK13975 thymidylate kinase; P 93.0 0.08 1.7E-06 50.2 3.2 25 291-315 4-28 (196)
425 cd04137 RheB Rheb (Ras Homolog 93.0 0.084 1.8E-06 49.2 3.2 22 291-312 3-24 (180)
426 cd04119 RJL RJL (RabJ-Like) su 93.0 0.082 1.8E-06 48.2 3.1 22 291-312 2-23 (168)
427 cd04124 RabL2 RabL2 subfamily. 93.0 0.082 1.8E-06 48.4 3.1 21 291-311 2-22 (161)
428 PLN02165 adenylate isopentenyl 92.9 0.1 2.3E-06 53.5 4.0 27 291-317 45-71 (334)
429 PF00485 PRK: Phosphoribulokin 92.9 0.065 1.4E-06 50.9 2.4 24 292-315 2-25 (194)
430 PRK08356 hypothetical protein; 92.9 0.081 1.7E-06 50.4 3.1 21 291-311 7-27 (195)
431 PF10662 PduV-EutP: Ethanolami 92.9 0.077 1.7E-06 47.5 2.7 22 291-312 3-24 (143)
432 PRK12338 hypothetical protein; 92.9 0.13 2.8E-06 52.6 4.6 28 290-317 5-32 (319)
433 smart00072 GuKc Guanylate kina 92.9 0.13 2.7E-06 48.5 4.3 27 291-317 4-30 (184)
434 TIGR00017 cmk cytidylate kinas 92.8 0.12 2.7E-06 50.1 4.2 31 291-321 4-34 (217)
435 TIGR01166 cbiO cobalt transpor 92.8 0.034 7.3E-07 52.7 0.2 24 291-314 20-43 (190)
436 PRK14738 gmk guanylate kinase; 92.8 0.088 1.9E-06 50.6 3.1 24 291-314 15-38 (206)
437 TIGR00231 small_GTP small GTP- 92.8 0.093 2E-06 46.8 3.2 23 290-312 2-24 (161)
438 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.8 0.082 1.8E-06 51.2 2.9 24 291-314 32-55 (218)
439 PRK05800 cobU adenosylcobinami 92.7 0.14 2.9E-06 47.7 4.2 26 291-316 3-28 (170)
440 PTZ00202 tuzin; Provisional 92.7 0.28 6E-06 52.0 6.7 55 253-318 261-315 (550)
441 cd04138 H_N_K_Ras_like H-Ras/N 92.7 0.1 2.2E-06 47.2 3.3 21 291-311 3-23 (162)
442 cd04113 Rab4 Rab4 subfamily. 92.6 0.097 2.1E-06 47.6 3.1 22 291-312 2-23 (161)
443 PF02367 UPF0079: Uncharacteri 92.6 0.23 5E-06 43.4 5.2 25 291-315 17-41 (123)
444 PRK13808 adenylate kinase; Pro 92.6 0.12 2.6E-06 53.2 3.9 25 291-315 2-26 (333)
445 cd04155 Arl3 Arl3 subfamily. 92.6 0.089 1.9E-06 48.5 2.8 23 290-312 15-37 (173)
446 smart00175 RAB Rab subfamily o 92.6 0.096 2.1E-06 47.6 3.0 22 291-312 2-23 (164)
447 cd00157 Rho Rho (Ras homology) 92.5 0.1 2.2E-06 47.9 3.1 22 291-312 2-23 (171)
448 cd04136 Rap_like Rap-like subf 92.5 0.11 2.4E-06 47.3 3.3 22 290-311 2-23 (163)
449 cd02028 UMPK_like Uridine mono 92.5 0.092 2E-06 49.3 2.8 23 292-314 2-24 (179)
450 cd00154 Rab Rab family. Rab G 92.5 0.1 2.2E-06 46.7 3.1 22 291-312 2-23 (159)
451 cd03269 ABC_putative_ATPase Th 92.5 0.096 2.1E-06 50.4 3.0 24 291-314 28-51 (210)
452 cd03264 ABC_drug_resistance_li 92.5 0.093 2E-06 50.5 2.9 24 291-314 27-50 (211)
453 TIGR03499 FlhF flagellar biosy 92.5 0.3 6.5E-06 49.4 6.7 23 291-313 196-218 (282)
454 PRK06696 uridine kinase; Valid 92.5 0.17 3.8E-06 49.2 4.8 25 290-314 23-47 (223)
455 cd04160 Arfrp1 Arfrp1 subfamil 92.5 0.094 2E-06 48.0 2.8 23 291-313 1-23 (167)
456 cd01867 Rab8_Rab10_Rab13_like 92.5 0.11 2.4E-06 47.8 3.2 23 290-312 4-26 (167)
457 cd03292 ABC_FtsE_transporter F 92.4 0.1 2.2E-06 50.4 3.0 24 291-314 29-52 (214)
458 cd03301 ABC_MalK_N The N-termi 92.4 0.099 2.2E-06 50.4 3.0 24 291-314 28-51 (213)
459 smart00173 RAS Ras subfamily o 92.4 0.11 2.3E-06 47.5 3.0 22 291-312 2-23 (164)
460 PRK10646 ADP-binding protein; 92.3 0.21 4.4E-06 45.4 4.7 25 291-315 30-54 (153)
461 cd03258 ABC_MetN_methionine_tr 92.3 0.1 2.2E-06 51.1 3.0 24 291-314 33-56 (233)
462 cd01862 Rab7 Rab7 subfamily. 92.3 0.1 2.2E-06 47.9 2.9 22 291-312 2-23 (172)
463 cd04156 ARLTS1 ARLTS1 subfamil 92.3 0.097 2.1E-06 47.5 2.6 22 291-312 1-22 (160)
464 cd03216 ABC_Carb_Monos_I This 92.3 0.11 2.4E-06 47.9 3.0 24 291-314 28-51 (163)
465 TIGR03608 L_ocin_972_ABC putat 92.3 0.11 2.3E-06 49.8 3.1 24 291-314 26-49 (206)
466 TIGR02858 spore_III_AA stage I 92.2 0.11 2.3E-06 52.2 3.0 25 291-315 113-137 (270)
467 cd01918 HprK_C HprK/P, the bif 92.2 0.14 3.1E-06 46.3 3.5 23 290-312 15-37 (149)
468 cd03246 ABCC_Protease_Secretio 92.2 0.13 2.8E-06 47.9 3.3 24 291-314 30-53 (173)
469 cd04101 RabL4 RabL4 (Rab-like4 92.2 0.12 2.5E-06 47.3 3.0 21 291-311 2-22 (164)
470 PRK13695 putative NTPase; Prov 92.2 0.12 2.7E-06 48.1 3.2 23 291-313 2-24 (174)
471 PRK11545 gntK gluconate kinase 92.2 0.11 2.4E-06 47.9 2.9 26 295-321 1-26 (163)
472 cd03262 ABC_HisP_GlnQ_permease 92.2 0.11 2.4E-06 50.0 3.0 24 291-314 28-51 (213)
473 COG1855 ATPase (PilT family) [ 92.2 0.099 2.1E-06 54.8 2.7 23 291-313 265-287 (604)
474 PRK13541 cytochrome c biogenes 92.2 0.11 2.5E-06 49.3 3.0 24 291-314 28-51 (195)
475 PF01583 APS_kinase: Adenylyls 92.2 0.11 2.4E-06 47.4 2.7 23 291-313 4-26 (156)
476 cd03247 ABCC_cytochrome_bd The 92.1 0.12 2.6E-06 48.3 3.1 24 291-314 30-53 (178)
477 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.1 0.11 2.4E-06 46.8 2.8 82 291-378 28-115 (144)
478 TIGR02673 FtsE cell division A 92.1 0.11 2.4E-06 50.1 2.9 24 291-314 30-53 (214)
479 cd01878 HflX HflX subfamily. 92.1 0.12 2.6E-06 49.3 3.1 23 290-312 42-64 (204)
480 PRK06761 hypothetical protein; 92.1 0.12 2.7E-06 51.9 3.2 25 291-315 5-29 (282)
481 TIGR00960 3a0501s02 Type II (G 92.1 0.11 2.3E-06 50.3 2.8 24 291-314 31-54 (216)
482 cd01852 AIG1 AIG1 (avrRpt2-ind 92.1 0.57 1.2E-05 44.5 7.8 22 291-312 2-23 (196)
483 TIGR02315 ABC_phnC phosphonate 92.0 0.12 2.5E-06 51.0 3.0 24 291-314 30-53 (243)
484 PRK10875 recD exonuclease V su 92.0 0.29 6.2E-06 54.9 6.4 37 260-313 155-191 (615)
485 cd03266 ABC_NatA_sodium_export 92.0 0.11 2.5E-06 50.1 2.9 24 291-314 33-56 (218)
486 TIGR00376 DNA helicase, putati 92.0 0.17 3.7E-06 57.1 4.7 22 291-312 175-196 (637)
487 KOG1968 Replication factor C, 92.0 0.12 2.5E-06 59.8 3.3 27 292-318 360-386 (871)
488 cd02025 PanK Pantothenate kina 92.0 0.11 2.5E-06 50.4 2.8 23 292-314 2-24 (220)
489 cd03263 ABC_subfamily_A The AB 92.0 0.12 2.6E-06 50.1 3.0 24 291-314 30-53 (220)
490 COG2074 2-phosphoglycerate kin 92.0 0.42 9.1E-06 46.6 6.5 57 244-317 61-117 (299)
491 COG0194 Gmk Guanylate kinase [ 92.0 0.23 5E-06 46.2 4.6 23 291-313 6-28 (191)
492 PF00931 NB-ARC: NB-ARC domain 92.0 0.22 4.8E-06 50.2 5.1 22 291-312 21-42 (287)
493 cd03261 ABC_Org_Solvent_Resist 92.0 0.12 2.6E-06 50.7 2.9 24 291-314 28-51 (235)
494 cd01860 Rab5_related Rab5-rela 91.9 0.14 2.9E-06 46.7 3.2 23 290-312 2-24 (163)
495 cd03115 SRP The signal recogni 91.9 0.12 2.6E-06 48.1 2.8 22 292-313 3-24 (173)
496 cd03222 ABC_RNaseL_inhibitor T 91.9 0.13 2.8E-06 48.2 3.0 81 291-377 27-115 (177)
497 cd03228 ABCC_MRP_Like The MRP 91.9 0.13 2.9E-06 47.7 3.1 24 291-314 30-53 (171)
498 cd04159 Arl10_like Arl10-like 91.9 0.11 2.4E-06 46.5 2.6 21 292-312 2-22 (159)
499 cd03230 ABC_DR_subfamily_A Thi 91.9 0.13 2.7E-06 48.0 3.0 24 291-314 28-51 (173)
500 cd01868 Rab11_like Rab11-like. 91.9 0.13 2.8E-06 47.0 3.0 22 290-311 4-25 (165)
No 1
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=100.00 E-value=2.6e-108 Score=847.97 Aligned_cols=537 Identities=46% Similarity=0.714 Sum_probs=474.4
Q ss_pred CcHHHHHHHHHHHhccccC-------CCCeEEEeccCCCccccccCCCCcccCCcEEEEEEEEEeeccceeEEEEEEEEe
Q 040742 1 KPRMTLSCMTAAVHKNKLE-------DGMKINIRPYNYPESMIALKNLKAAYIDKLVSVRGTVVKAGTVRPLVVRMDFEC 73 (581)
Q Consensus 1 ~P~~~l~~~~~a~~~~~~~-------~~~~i~vr~~n~p~~~~~~~~l~s~~igklV~i~G~V~~~s~v~p~~~~~~~~C 73 (581)
||..+++|+.+|+|...++ ..++|++||+|+|.. ..+|+|+++.+|+||+|.|+|+|+|+|+|.+.+++|.|
T Consensus 82 ~~~r~~p~m~~av~~~l~d~~~~~~~~~~~~~v~f~nlp~~-~~irdlra~~iG~Lv~isGtVvRts~VrPelt~~~F~C 160 (764)
T KOG0480|consen 82 NYYRVLPCMCRAVHKVLKDWSTNSGALVKKIYVRFYNLPTR-HKIRDLRAARIGKLVRISGTVVRTSPVRPELTKMTFLC 160 (764)
T ss_pred hhhhhHHHHHHHHHHHHHcccccccccceeEEEEEeccccc-cccccccHhhhcceEEEEEEEEEeecccceeeeeEEEH
Confidence 5788999999999976544 356899999999987 89999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCeecCCccccCCCCCC-CCeEEeccccceeeeeEEEeeccccCCCCCCCCCceEEEEEeccCccccc
Q 040742 74 SKCKSEILRIFPEGKFSPPLVCTLHGCKS-KTFTPIRASARKIDFQKIRLQELLKSQDHEEGRVPRTVECELSEDLVDAC 152 (581)
Q Consensus 74 ~~C~~~~~~~~~~~~~~~p~~C~~~~C~~-~~f~~~~~~s~~~d~Q~I~lQe~~~~~~~~~g~~p~~i~v~l~~dlv~~~ 152 (581)
..||..+...+++++|++|..|+++.|.+ +.|.++++++.|+|||+|||||.. +..|.|.+||+++|+|++|+|++|
T Consensus 161 ~~C~t~i~~v~q~fkYt~Pt~C~np~C~nrr~f~l~~~~s~f~D~QkIrIQE~~--~E~p~GsiPRtvdviLr~dlVe~~ 238 (764)
T KOG0480|consen 161 EKCGTVIRNVEQQFKYTEPTKCPNPVCSNRRSFTLDRSSSRFLDWQKIRIQELQ--AEIPRGSIPRTVDVILRGDLVETA 238 (764)
T ss_pred hhCCCeeccchhcCccCCCccCCCccccCCceeeeecccceeeeeeeeehhhhh--hhCCCCCCCceeEEEEhhhhHhhc
Confidence 99999999999999999999999999999 579999999999999999999975 568999999999999999999999
Q ss_pred cCCCEEEEEEEEEEeecccccCCCcccccc-----ccceEEEEEEEEEEecCCCCCccccccCcccccccccc--ccCCC
Q 040742 153 IPGDVVTVTGIIRVINNYMDIGGGKSKSKS-----QGFYYLFLEAVSVKNSKSQSDTEDLQGSNCNARASEQA--NLFSF 225 (581)
Q Consensus 153 ~pGd~V~v~GIl~~~~~~~~~~~~~~~~~~-----~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 225 (581)
+|||+|.+|||+...++....++..++..+ ...+-+++++++|++.+.+..+.....++..+..++.. -..++
T Consensus 239 ~pGD~v~~TGiliVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq~aFlac~~~~~~~~ee~~~~~~~~~~ 318 (764)
T KOG0480|consen 239 QPGDKVDITGILIVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQLAFLACHVQSTLAVEEDDEEDMLNSM 318 (764)
T ss_pred CCCCEEEEEEEEEEecChHHhcCCccccccccCCCcccceeeehhcccccchhhhhHhhhhcccccccchhhhHHHhhhc
Confidence 999999999999998865555533333211 13667899999998766543221111111111111111 13568
Q ss_pred CHHHHHHHHHHHhhcCchHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHH
Q 040742 226 SPRDLEFIVKFSEESGSDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQL 305 (581)
Q Consensus 226 ~~~~~~~i~~~~~~~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~l 305 (581)
+.+|+..+.+... ++++|..|..|++|.||||+.+|++|+|+|+||+.|... +++++||++|||++|+||||||++
T Consensus 319 s~~e~~~~~em~~--~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~--eg~~lRGDinv~iVGDPgt~KSQf 394 (764)
T KOG0480|consen 319 SSEEFAEIREMSK--DENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAG--EGTSLRGDINVCIVGDPGTGKSQF 394 (764)
T ss_pred cHHHHHHHHHHhc--CchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCC--CCccccCCceEEEeCCCCccHHHH
Confidence 8899988888876 689999999999999999999999999999999987654 577899999999999999999999
Q ss_pred HHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEe
Q 040742 306 LQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVA 384 (581)
Q Consensus 306 a~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~ 384 (581)
+++++..+|+++|++|..++.+|||+++++|+.+|+|++++|++++||+|||||||||||....+ +|||+||+|+++++
T Consensus 395 Lk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIa 474 (764)
T KOG0480|consen 395 LKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIA 474 (764)
T ss_pred HHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehhe
Confidence 99999999999999999999999999999999999999999999999999999999999997555 99999999999999
Q ss_pred eCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCccc
Q 040742 385 KAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSA 464 (581)
Q Consensus 385 k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~ 464 (581)
|||+..++|+|.+||||+||..|+||..+++.+|++|+++++|||||+|++.|.+++..|..|++||++.|..-....
T Consensus 475 KAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~-- 552 (764)
T KOG0480|consen 475 KAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDAT-- 552 (764)
T ss_pred ecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986532211
Q ss_pred ccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCC
Q 040742 465 AKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNT 544 (581)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~ 544 (581)
....+++.+.+++||.||| ++.|.++.+|.+.|.++|..+|....
T Consensus 553 ----------------------------------~~~~~~~~e~vrkYi~yAR-~~~P~ls~ea~~~lve~Y~~lR~~~~ 597 (764)
T KOG0480|consen 553 ----------------------------------ERVCVYTLEQVRKYIRYAR-NFKPKLSKEASEMLVEKYKGLRQRDA 597 (764)
T ss_pred ----------------------------------cccccccHHHHHHHHHHHH-hcCccccHHHHHHHHHHHHHHHHhhc
Confidence 0114789999999999999 57999999999999999999998773
Q ss_pred ---CCCCccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 545 ---SADSTPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 545 ---~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
...++++|+|+||||||||+|+||+++++.||++||+
T Consensus 598 ~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ 637 (764)
T KOG0480|consen 598 QGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVE 637 (764)
T ss_pred cccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHH
Confidence 3457899999999999999999999999999999973
No 2
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=7e-100 Score=819.72 Aligned_cols=520 Identities=43% Similarity=0.691 Sum_probs=461.3
Q ss_pred CcHHHHHHHHHHHhcccc------CC-CCeEEEeccCCCccccccCCCCcccCCcEEEEEEEEEeeccceeEEEEEEEEe
Q 040742 1 KPRMTLSCMTAAVHKNKL------ED-GMKINIRPYNYPESMIALKNLKAAYIDKLVSVRGTVVKAGTVRPLVVRMDFEC 73 (581)
Q Consensus 1 ~P~~~l~~~~~a~~~~~~------~~-~~~i~vr~~n~p~~~~~~~~l~s~~igklV~i~G~V~~~s~v~p~~~~~~~~C 73 (581)
+|.+.++.++.|+.++.. .. ...+++||.|+|.. .++|+|++.++||||+++|+|+++|.++|.+++++|+|
T Consensus 54 ~p~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iR~l~s~~igkLV~v~GiV~r~s~v~p~~~~~~~~C 132 (682)
T COG1241 54 NPEEIIPLFEKALDEIALLLFPEVDRSLKKIHVRFKNLPNR-LSIRELRSEHIGKLVSVEGIVTRASEVRPRLKKAVFEC 132 (682)
T ss_pred ChHHHHHHHHHHHHHHHHhcCccccccccceEEEecCCcCC-cChhhCchhhCCcEEEEEEEEEecccccceeEEEEEEc
Confidence 699999999999886532 22 36899999999987 78999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCeecCCccccCCCCC--CCCeEEeccccceeeeeEEEeeccccCCCCCCCCCceEEEEEeccCcccc
Q 040742 74 SKCKSEILRIFPEGKFSPPLVCTLHGCK--SKTFTPIRASARKIDFQKIRLQELLKSQDHEEGRVPRTVECELSEDLVDA 151 (581)
Q Consensus 74 ~~C~~~~~~~~~~~~~~~p~~C~~~~C~--~~~f~~~~~~s~~~d~Q~I~lQe~~~~~~~~~g~~p~~i~v~l~~dlv~~ 151 (581)
++||..+...+....+.+|..|+++ ++ ...|....+.|.|+|||+|+|||+ ++..|.|++|++++|+|++||+++
T Consensus 133 ~~Cg~~~~~~~~~~~~~~~~~C~~~-~~~~~~~~~~~~~~s~f~d~Q~vkiQE~--pe~~p~g~~Prs~~vil~~dlv~~ 209 (682)
T COG1241 133 PKCGREVEVEQSEFRVEPPRECENC-GKFGKGPLKLVPRKSEFIDFQKVKIQEL--PELVPGGELPRSIEVILEDDLVDS 209 (682)
T ss_pred CCCCCEEEEEeccccccCCccCCCc-cccCCCceEEecCcceeeeceEEEEecC--cccCCCCCCCceEEEEEecCcccc
Confidence 9999999999988888999999863 23 235888899999999999999995 678999999999999999999999
Q ss_pred ccCCCEEEEEEEEEEeecccccCCCccccccccceEEEEEEEEEEecCCCCCccccccCccccccccccccCCCCHHHHH
Q 040742 152 CIPGDVVTVTGIIRVINNYMDIGGGKSKSKSQGFYYLFLEAVSVKNSKSQSDTEDLQGSNCNARASEQANLFSFSPRDLE 231 (581)
Q Consensus 152 ~~pGd~V~v~GIl~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (581)
+.|||+|.||||++..+.. .. ++.+....|++|++|++|...... ....++++|.+
T Consensus 210 ~~pGdrV~itGi~~~~~~~---~~--~~~~~~~~~~~~~~a~~v~~~~~~-------------------~~~~~t~ed~e 265 (682)
T COG1241 210 VRPGDRVKITGVVRIVPSR---SL--SGRRKGPVFEIYLEANSVEKLDKR-------------------EEVEITEEDEE 265 (682)
T ss_pred cCCCCEEEEEEEEeccccc---cc--ccccCCceEEEEEEEEEEEeccch-------------------hhccCCHHHHH
Confidence 9999999999999987621 11 113346899999999999754321 23568999999
Q ss_pred HHHHHHhhcCchHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHH
Q 040742 232 FIVKFSEESGSDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 232 ~i~~~~~~~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~ 311 (581)
.|.++++ .+++++.|++|++|+|+|++.+|+|++++|+||..+..+++. ++||++||||+|+||||||+|++++++
T Consensus 266 ~i~elak--~~~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~--~iRGDInILLvGDPgtaKSqlLk~v~~ 341 (682)
T COG1241 266 EIKELAK--RPDIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGT--RIRGDIHILLVGDPGTAKSQLLKYVAK 341 (682)
T ss_pred HHHHHhc--CCcHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCc--ccccceeEEEcCCCchhHHHHHHHHHh
Confidence 9999987 599999999999999999999999999999999998877655 599999999999999999999999999
Q ss_pred HCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeE
Q 040742 312 VSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVA 390 (581)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~ 390 (581)
.+|+++|++|.+++.+|||+++.+++.+|+|++++|++++|++|||||||||+|+...+ +||++||+|+++++|||+.+
T Consensus 342 ~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~a 421 (682)
T COG1241 342 LAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITA 421 (682)
T ss_pred hCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceee
Confidence 99999999999999999999999999888999999999999999999999999998877 99999999999999999999
Q ss_pred eeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCccc
Q 040742 391 SLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRT 470 (581)
Q Consensus 391 ~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~ 470 (581)
++|+||+|+||+||.+|+|++.+++.+||+|+++||||||++|++.|.|+++.|..+|.|+++.|........
T Consensus 422 tLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~------- 494 (682)
T COG1241 422 TLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEET------- 494 (682)
T ss_pred ecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999976433211
Q ss_pred ccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCC---CCC
Q 040742 471 AYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNT---SAD 547 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~---~~~ 547 (581)
.. .+ . .+ ... .-+.++|++||.|||+++.|.|+++|.+.|.+||+.+|+... ...
T Consensus 495 ~~-----~~----~---~~---------~~~-~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~ 552 (682)
T COG1241 495 IS-----LD----G---VD---------EVE-ERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKR 552 (682)
T ss_pred cc-----cc----c---cc---------ccc-cCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccC
Confidence 00 00 0 00 000 016889999999999999999999999999999999998643 345
Q ss_pred CccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 548 STPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 548 ~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
..|+|+||||++||||+||||++|++.|+++||.
T Consensus 553 ~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~ 586 (682)
T COG1241 553 TIPITARQLESIIRLAEAHAKMRLSDVVEEEDVD 586 (682)
T ss_pred cccccHHHHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 6899999999999999999999999999999973
No 3
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=100.00 E-value=8.8e-98 Score=775.44 Aligned_cols=519 Identities=40% Similarity=0.647 Sum_probs=465.0
Q ss_pred cHHHHHHHHHHHhccccCC------CCeEEEeccCCCccccccCCCCcccCCcEEEEEEEEEeeccceeEEEEEEEEeCC
Q 040742 2 PRMTLSCMTAAVHKNKLED------GMKINIRPYNYPESMIALKNLKAAYIDKLVSVRGTVVKAGTVRPLVVRMDFECSK 75 (581)
Q Consensus 2 P~~~l~~~~~a~~~~~~~~------~~~i~vr~~n~p~~~~~~~~l~s~~igklV~i~G~V~~~s~v~p~~~~~~~~C~~ 75 (581)
|.|+++-|..+++++.++. ..+|.||++|+-++ .++|+|++++|+|||+|+|+|+|+|++-|.+++++|+|..
T Consensus 191 pqevip~~d~t~~~~~~e~~~~~~~~~~i~vRPfn~~~~-~smr~lNp~dIDkLisI~GmViRss~vipem~~afFrC~v 269 (804)
T KOG0478|consen 191 PQEVIPIFDETANEIVLERYVLEILEKSIKVRPFNAGKT-FSMRNLNPNDIDKLISISGMVIRSSEVIPEMVEAFFRCSV 269 (804)
T ss_pred hHhhcccchHHHHHHHHhhccccchhceeEeeccCcccc-cccccCChhhhhheEEeeeEEEecCCCCHHHHhHhhhhhh
Confidence 8899999999999876543 46899999999876 8999999999999999999999999999999999999999
Q ss_pred CCcEEEEeeCCCeecCCccccCCCCCCC-CeEEeccccceeeeeEEEeeccccCCCCCCCCCceEEEEEeccCccccccC
Q 040742 76 CKSEILRIFPEGKFSPPLVCTLHGCKSK-TFTPIRASARKIDFQKIRLQELLKSQDHEEGRVPRTVECELSEDLVDACIP 154 (581)
Q Consensus 76 C~~~~~~~~~~~~~~~p~~C~~~~C~~~-~f~~~~~~s~~~d~Q~I~lQe~~~~~~~~~g~~p~~i~v~l~~dlv~~~~p 154 (581)
|++.+..+...++..+|..|. .|..+ .|.++++.+.|.|.|.||+|| .|+.++.|++|+++.|.+++||||+++|
T Consensus 270 C~~~~~ve~drg~i~eP~~C~--~C~~~~~~~Lihnrs~F~dkQviklqE--spd~~p~g~tPhtv~v~~~~dLVD~v~p 345 (804)
T KOG0478|consen 270 CGHEIAVESDRGRIKEPMLCK--ECGTTNSFQLLHNRSEFADKQVIKLQE--SPDDMPEGSTPHTVSVVLHNDLVDKVRP 345 (804)
T ss_pred cCceEEEEeecCccCCCcccc--cccCcccceeehhhhhhcccceeeeee--ccccCcCCCCCceEEEEEehhhhhccCC
Confidence 999999999999999999998 58654 699999999999999999999 5788999999999999999999999999
Q ss_pred CCEEEEEEEEEEeecccccCCCccccccccceEEEEEEEEEEecCC-CCCccccccCccccccccccccCCCCHHHHHHH
Q 040742 155 GDVVTVTGIIRVINNYMDIGGGKSKSKSQGFYYLFLEAVSVKNSKS-QSDTEDLQGSNCNARASEQANLFSFSPRDLEFI 233 (581)
Q Consensus 155 Gd~V~v~GIl~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 233 (581)
||+|+||||++..+- +.++..+ .-++.|.+||+++||++... ....++ +......+..++++.|
T Consensus 346 GDrv~VTGi~ra~p~--r~np~~r--~vkSvyktyldvvh~rk~s~~rl~~~d-----------~~d~~~~~~~~~~e~i 410 (804)
T KOG0478|consen 346 GDRVEVTGILRATPV--RVNPRMR--MVKSVYKTYLDVVHIRKASMKRLEGSD-----------ERDVDEVRRIEDLEKI 410 (804)
T ss_pred CCeEEEEEEEEeEEe--ccCcchh--hHHHHHHHHhHhhhhhhhhhhhccccc-----------cccccccccHHHHHHH
Confidence 999999999999873 2232221 23578999999999964211 111000 0112456788889999
Q ss_pred HHHHhhcCchHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 234 VKFSEESGSDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 234 ~~~~~~~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
..+++ .+|+|+.|++|++|+|||+|++|+++|++|+||+.+....++ ++||+|||||+|+||||||+|++++++++
T Consensus 411 ~elsk--rpdiy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~--~~R~~INILL~GDPGtsKSqlLqyv~~l~ 486 (804)
T KOG0478|consen 411 QELSK--RPDIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSG--RFRGDINILLVGDPGTSKSQLLQYCHRLL 486 (804)
T ss_pred HHHhc--CccHHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccc--cccccceEEEecCCCcCHHHHHHHHHHhC
Confidence 99987 499999999999999999999999999999999887665443 69999999999999999999999999999
Q ss_pred CCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEee
Q 040742 314 PRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASL 392 (581)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~ 392 (581)
|+++|++|.+++.+|||+.+.+++.+++|+++.|+++++++|+|||||||||+...+ .|||+||+|+++++|||+.+++
T Consensus 487 pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sL 566 (804)
T KOG0478|consen 487 PRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASL 566 (804)
T ss_pred CcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeec
Confidence 999999999999999999999999999999999999999999999999999998777 8999999999999999999999
Q ss_pred CCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCccccc
Q 040742 393 SARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAY 472 (581)
Q Consensus 393 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 472 (581)
|+|++|||++||..++|++.+++.+||+|+++|||||||||++.|.+|+..|+.++.|+...|....+..
T Consensus 567 NAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~---------- 636 (804)
T KOG0478|consen 567 NARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQ---------- 636 (804)
T ss_pred cccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999987643110
Q ss_pred CCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 040742 473 HNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPIT 552 (581)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t 552 (581)
....++..+++.|+.||+.+++|.++++|.+.+..+|+.+|+..........+
T Consensus 637 ---------------------------~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat 689 (804)
T KOG0478|consen 637 ---------------------------GSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITAT 689 (804)
T ss_pred ---------------------------hhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchh
Confidence 12346778899999999999999999999999999999999987655556779
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 553 ARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 553 ~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
+|++|+|+|+++|||++++++.|+..||+
T Consensus 690 ~rQlesLiRlsEahak~r~s~~ve~~dV~ 718 (804)
T KOG0478|consen 690 PRQLESLIRLSEAHAKMRLSNRVEEIDVE 718 (804)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHH
Confidence 99999999999999999999999999974
No 4
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=2.7e-93 Score=783.95 Aligned_cols=552 Identities=30% Similarity=0.471 Sum_probs=451.6
Q ss_pred CcHHHHHHHHHHHhcccc------------C-CCCeEEEeccCCCccccccCCCCcccCCcEEEEEEEEEeeccceeEEE
Q 040742 1 KPRMTLSCMTAAVHKNKL------------E-DGMKINIRPYNYPESMIALKNLKAAYIDKLVSVRGTVVKAGTVRPLVV 67 (581)
Q Consensus 1 ~P~~~l~~~~~a~~~~~~------------~-~~~~i~vr~~n~p~~~~~~~~l~s~~igklV~i~G~V~~~s~v~p~~~ 67 (581)
+|.++|+.++.|+++... . ....++||++|+|.. ..+|+|++.++||||+|+|+|+|+|.|+|++.
T Consensus 169 ~P~e~i~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~vr~~n~~~~-~~iR~L~s~~i~kLV~v~GiV~r~S~v~P~l~ 247 (915)
T PTZ00111 169 FPADCIAELDKVLVKLFNELLSKHYSDLSLENNSFFPRARLMNKPVS-DCVGNLEPSMADSLVQFSGTVVRQTWIVPEIT 247 (915)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcccccchhccccceEEEEEeCCCCC-CCcccCCHhhCCCeEEEEEEEEEccCcchhhE
Confidence 599999999999986421 0 112479999999976 88999999999999999999999999999999
Q ss_pred EEEEEeCC-----------CCcEEEEeeCCCeecCCccccCCCCCCC-CeEEeccccceeeeeEEEeeccccCCCCCCCC
Q 040742 68 RMDFECSK-----------CKSEILRIFPEGKFSPPLVCTLHGCKSK-TFTPIRASARKIDFQKIRLQELLKSQDHEEGR 135 (581)
Q Consensus 68 ~~~~~C~~-----------C~~~~~~~~~~~~~~~p~~C~~~~C~~~-~f~~~~~~s~~~d~Q~I~lQe~~~~~~~~~g~ 135 (581)
.++|+|.. |++.....+..+.+.+|..|+ .|++. +|.++.+.|.|+|||+|+|||. |+.+|.|+
T Consensus 248 ~a~f~C~~~~~~~~~~~~~C~~~~~~~~~~g~~~~P~~C~--~C~~~~~f~l~~~~s~f~D~Q~IklQE~--pe~vp~G~ 323 (915)
T PTZ00111 248 MACFRCRGQKKIGLNDYQPCTCEHYEYVIQGEVNEPLLCN--ECNSKYTFELNHNMCVYSTKKIVKLLQS--NSSLNNPD 323 (915)
T ss_pred EEEEECCCCCcccCCccccCCccccccccCCcccCCCCCC--CCCCCCCeEEccCccEEEeeeEEEEeeC--cccCCCCC
Confidence 99999986 777766666778899999997 59875 6999999999999999999994 67889999
Q ss_pred Cc--------------------eEEEEEeccCccccccCCCEEEEEEEEEEeecccccCCCccccccccceEEEEEEEEE
Q 040742 136 VP--------------------RTVECELSEDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKSQGFYYLFLEAVSV 195 (581)
Q Consensus 136 ~p--------------------~~i~v~l~~dlv~~~~pGd~V~v~GIl~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~i 195 (581)
+| ++++|+|++||||+|+|||+|+||||++..+.. ..+. .....+.|.+|+++++|
T Consensus 324 ~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGDrV~VtGIl~~~~~~--~~~~--~~~~~~~~~~yl~~~~i 399 (915)
T PTZ00111 324 KDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGDRVTVVGILKVTPIR--TSTT--RRTLKSLYTYFVNVIHV 399 (915)
T ss_pred CCccccccccccccccccccCCceEEEEEecchhccCCCCCEEEEEEEEEecccc--cccc--ccccccccceEEEEEEE
Confidence 99 999999999999999999999999999986521 1111 11224689999999999
Q ss_pred EecCCCCCccccccCccccccccccccCCCCHHHHHHHHHHHhhcCchHHHHHHHhhCccccccHHHHHHHHHHHhcCcc
Q 040742 196 KNSKSQSDTEDLQGSNCNARASEQANLFSFSPRDLEFIVKFSEESGSDIFRQIVQSICPSIYGHELVKAGITLALFGGVR 275 (581)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~ 275 (581)
+........ ..+. ..........|+++|.+.|.++++ .+++|+.|++|++|.|+|++.+|++++++|+||..
T Consensus 400 ~~~~~~~~~-~~~~-----~~~~~~~~~~~t~ed~~~I~~ls~--~p~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~ 471 (915)
T PTZ00111 400 KVINSTNAN-QPEK-----GLKYLGNENDFSDLQVYKILELSR--NPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGNK 471 (915)
T ss_pred EEecccccc-cccc-----ccccccccccCCHHHHHHHHHHhc--CHHHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCc
Confidence 754321100 0000 000011235699999999999987 58999999999999999999999999999999986
Q ss_pred cccC-----CC--CCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEE-ecCccccceeccc
Q 040742 276 KHSM-----YQ--NKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVV-KDSVTNDYAFEAG 347 (581)
Q Consensus 276 ~~~~-----~~--~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~g 347 (581)
+... ++ ...++||++||||+|+||||||++|+++++.+|+..|++|...+..++++... .+..+|.|.+++|
T Consensus 472 k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~G 551 (915)
T PTZ00111 472 NSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPG 551 (915)
T ss_pred cccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCC
Confidence 5322 11 11568999999999999999999999999999999999999988899988765 4445788999999
Q ss_pred eeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhh
Q 040742 348 AMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALL 426 (581)
Q Consensus 348 ~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all 426 (581)
++++|++|+|||||+++|++..| +|+++||+|++++.++|+..+++++++||||+||.+|+|++.+++.+|++|+++|+
T Consensus 552 aLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LL 631 (915)
T PTZ00111 552 AVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631 (915)
T ss_pred cEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHh
Confidence 99999999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCH
Q 040742 427 SRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPA 506 (581)
Q Consensus 427 ~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 506 (581)
|||||+|++.|.|+++.|..||.||++.|...+...... +.................. .......++.
T Consensus 632 SRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~ 699 (915)
T PTZ00111 632 TRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGN----------DEDTYDRSNTMHVEDESLR--SEKDYNKNDL 699 (915)
T ss_pred hhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccc----------cccchhccccccccccccc--cccccCCCCH
Confidence 999999999999999999999999998874321110000 0000000000000000000 0112345899
Q ss_pred HHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcC------------------------CCCCCccccHHHHHHHHHH
Q 040742 507 PLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHN------------------------TSADSTPITARQLESLVRL 562 (581)
Q Consensus 507 ~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~------------------------~~~~~~~~t~R~leslirl 562 (581)
++|++||.|||++++|.|+++|.+.|.++|++||+.. .+....++|+|+||+||||
T Consensus 700 ~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRL 779 (915)
T PTZ00111 700 DMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRI 779 (915)
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999741 1223578999999999999
Q ss_pred HHHHHhccCCCCCCccccC
Q 040742 563 AEARARLDLREEITAEDAL 581 (581)
Q Consensus 563 a~a~A~l~~~~~V~~~Dv~ 581 (581)
|+|||||+|++.|+++||+
T Consensus 780 sEA~AK~rLs~~Vt~~Dv~ 798 (915)
T PTZ00111 780 SVSLARMRLSTVVTPADAL 798 (915)
T ss_pred HHHHhhhcCcCcccHHHHH
Confidence 9999999999999999984
No 5
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=100.00 E-value=5.6e-93 Score=724.91 Aligned_cols=546 Identities=35% Similarity=0.523 Sum_probs=455.7
Q ss_pred CcHHHHHHHHHHHhccc-------cCCCCeEEEeccCCCcc-ccccCCCCcccCCcEEEEEEEEEeeccceeEEEEEEEE
Q 040742 1 KPRMTLSCMTAAVHKNK-------LEDGMKINIRPYNYPES-MIALKNLKAAYIDKLVSVRGTVVKAGTVRPLVVRMDFE 72 (581)
Q Consensus 1 ~P~~~l~~~~~a~~~~~-------~~~~~~i~vr~~n~p~~-~~~~~~l~s~~igklV~i~G~V~~~s~v~p~~~~~~~~ 72 (581)
||.+.+++|+.|+.... ......++|-|.+..-. .+++|.|.|.++|++||++|+|+++|-|+|++.+.++.
T Consensus 66 ~p~~~~~~f~~AL~~~~~~~d~~~~~~~~~~~vGfeGsFG~~hv~PRtL~s~~lg~mVcvEGIVTkcSlvRPKvvkSVHY 145 (818)
T KOG0479|consen 66 NPAEEVPPFEDALTDAASRIDDVYAKVKELFFVGFEGSFGNRHVNPRTLTSVYLGKMVCVEGIVTKCSLVRPKVVKSVHY 145 (818)
T ss_pred ChHhhhhhHHHHHHHHHhcccchhhhhccceEEEeeeeccccccChhhHHHHHhCceEEeeeeeeeeeeechhhhheeee
Confidence 69999999999998542 12344667777543222 36789999999999999999999999999999999999
Q ss_pred eCCCCcEEEEeeCCCe----ecCCccccCCCCCCCCeEEeccccceeeeeEEEeeccccCCCCCCCCCceEEEEEeccCc
Q 040742 73 CSKCKSEILRIFPEGK----FSPPLVCTLHGCKSKTFTPIRASARKIDFQKIRLQELLKSQDHEEGRVPRTVECELSEDL 148 (581)
Q Consensus 73 C~~C~~~~~~~~~~~~----~~~p~~C~~~~C~~~~f~~~~~~s~~~d~Q~I~lQe~~~~~~~~~g~~p~~i~v~l~~dl 148 (581)
|+..+...+..+.+.+ +..+..-|..--.++.+..-...|.|.|+|.|.|||+ ||..|.|++||+++|+|++||
T Consensus 146 cpaT~~~~~r~Y~D~T~~~~~p~~svYPT~De~gN~L~TEyGlS~ykDHQtitiQEm--PE~APaGQLPRSVDvilddDL 223 (818)
T KOG0479|consen 146 CPATNKFHERDYRDATMLTTLPTGSVYPTRDEDGNLLETEYGLSVYKDHQTITIQEM--PEKAPAGQLPRSVDVILDDDL 223 (818)
T ss_pred ccccCcchhhhhcchheecccccCCcCCccCCCCCeeeEeecceeeecccEEEeeec--cccCCCCCCCcceeEEecccc
Confidence 9999998877654432 2222222222234455666677899999999999996 678999999999999999999
Q ss_pred cccccCCCEEEEEEEEEEeecccccCCCccccccccceEEEEEEEEEEecCCCCCccccccCccccccccccccCCCCHH
Q 040742 149 VDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKSQGFYYLFLEAVSVKNSKSQSDTEDLQGSNCNARASEQANLFSFSPR 228 (581)
Q Consensus 149 v~~~~pGd~V~v~GIl~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (581)
||+|||||+|.|.|+|+... +|+..+.++.|.+.|-||+|+.... .....|+.+
T Consensus 224 VD~~KPGDRV~ivG~yr~Lp-------~k~~g~tsg~FRTvliaNni~~l~k-------------------e~~~~~t~~ 277 (818)
T KOG0479|consen 224 VDRVKPGDRVNIVGIYRSLP-------GKSNGNTSGTFRTVLIANNIELLSK-------------------EAAPDFTDE 277 (818)
T ss_pred cccCCCCCeeEEEEEEeecc-------CccCCcccceeEEEEEeccHHhhcc-------------------cccccCChh
Confidence 99999999999999999865 2344455789999999999964321 113578999
Q ss_pred HHHHHHHHHhhcCchHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHH
Q 040742 229 DLEFIVKFSEESGSDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQA 308 (581)
Q Consensus 229 ~~~~i~~~~~~~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~ 308 (581)
|+..|+++++ ..|+|+.|+.|++|+|+||+.+|++|++.|+||.++++.. +.++||+|||||+|+|.|+||+|+|+
T Consensus 278 Di~~i~klsk--~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~N--GshlRGDINiLlvGDPSvAKSQLLRy 353 (818)
T KOG0479|consen 278 DIRNIKKLSK--KKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLEN--GSHLRGDINILLVGDPSVAKSQLLRY 353 (818)
T ss_pred hHHHHHHHHh--cCCHHHHHhhccCcccccHHHHHHHHHHHHhccceeccCC--CceeccceeEEEecCchHHHHHHHHH
Confidence 9999999997 5899999999999999999999999999999999998865 45699999999999999999999999
Q ss_pred HHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCC
Q 040742 309 AAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAG 387 (581)
Q Consensus 309 la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g 387 (581)
+...+|.++-++|.++++.|||+++.-|..+|+..+++|++++|+.||+||||||+|+.-.. ++||+||+|+++++|||
T Consensus 354 VLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAG 433 (818)
T KOG0479|consen 354 VLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAG 433 (818)
T ss_pred HHhcccccccccCCCCCCccceeEEeeccccchhhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEecc
Confidence 99999999999999999999999999999999999999999999999999999999997666 99999999999999999
Q ss_pred eeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccC
Q 040742 388 LVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKK 467 (581)
Q Consensus 388 ~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 467 (581)
+..++++||+|+||+||.+|+|+..++..+||+|+++||+||||+|++.|..+...|..|+.|+|..|.+.........-
T Consensus 434 IHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~ 513 (818)
T KOG0479|consen 434 IHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEP 513 (818)
T ss_pred chhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999765433211110
Q ss_pred cccccCCCcccc------ccccccchhhhhc--cCC-CCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHH
Q 040742 468 PRTAYHNTEGLD------LSVKSGSLVSKLR--LDP-KKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLK 538 (581)
Q Consensus 468 ~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~-~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~ 538 (581)
..+ ++.... +.......+.+.. ++. .+......++.+|+|+||.||+..+.|+|+++|.++|.+.|..
T Consensus 514 ~~~---g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~ 590 (818)
T KOG0479|consen 514 VPE---GNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTD 590 (818)
T ss_pred ccC---CCcccccccccccccccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhh
Confidence 000 000000 1111122222221 111 1122345799999999999999999999999999999999999
Q ss_pred HhhcCC---CCCCccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 539 LRDHNT---SADSTPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 539 lR~~~~---~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
||.... .....|+|+|+||.|||||.||||+++++.|+.+|++
T Consensus 591 LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe 636 (818)
T KOG0479|consen 591 LRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAE 636 (818)
T ss_pred hhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHH
Confidence 998765 2457899999999999999999999999999999973
No 6
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=100.00 E-value=2.9e-94 Score=724.34 Aligned_cols=479 Identities=38% Similarity=0.648 Sum_probs=424.7
Q ss_pred cccCCCCcccCCcEEEEEEEEEeeccceeEEEEEEEEeCCCCcEEEEeeCCCeecCCccccCCCCCCCC----eEEeccc
Q 040742 36 IALKNLKAAYIDKLVSVRGTVVKAGTVRPLVVRMDFECSKCKSEILRIFPEGKFSPPLVCTLHGCKSKT----FTPIRAS 111 (581)
Q Consensus 36 ~~~~~l~s~~igklV~i~G~V~~~s~v~p~~~~~~~~C~~C~~~~~~~~~~~~~~~p~~C~~~~C~~~~----f~~~~~~ 111 (581)
..+|++++.+||+||+++|+|+|+|+|||.+..++|+|..||.+++++.+...|+++..|++..|+.++ +.+..--
T Consensus 147 ~svR~vka~~iG~LvtvrGIVTR~S~VKP~m~VatYtCd~CGaE~yQeV~s~~F~pl~~CpS~eC~~n~~~G~L~lqtRg 226 (721)
T KOG0482|consen 147 YSVREVKADHIGSLVTVRGIVTRVSDVKPSMVVATYTCDQCGAETYQEVNSRTFTPLSECPSEECRTNKAGGRLYLQTRG 226 (721)
T ss_pred cchhhhhhhhccceEEEEEEEEeccccccceEEEEEecccccHhhhccccCccccchhhCChHHhhhcccCCeEEEEecc
Confidence 568999999999999999999999999999999999999999999999999999999999999998642 3444445
Q ss_pred cceeeeeEEEeeccccCCCCCCCCCceEEEEEeccCccccccCCCEEEEEEEEEEeecccccCCCccccccccceEEEEE
Q 040742 112 ARKIDFQKIRLQELLKSQDHEEGRVPRTVECELSEDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKSQGFYYLFLE 191 (581)
Q Consensus 112 s~~~d~Q~I~lQe~~~~~~~~~g~~p~~i~v~l~~dlv~~~~pGd~V~v~GIl~~~~~~~~~~~~~~~~~~~~~~~~~i~ 191 (581)
|+|+.||++++||. .+.+|.|.+||+++|+++++++.+|+|||.|.|+||+.+.. ..|+..-...-.-++||+
T Consensus 227 SKFikfQe~kmQEl--s~qVPvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~p-----ytGfr~~~aGLladtYLe 299 (721)
T KOG0482|consen 227 SKFIKFQEVKMQEL--SDQVPVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIP-----YTGFRALKAGLLADTYLE 299 (721)
T ss_pred cccchhhhhhHHHH--hccCCCCccCceeEEEEecccceecCCCCEEEEeeeecccc-----hhhHHHHHhhhHHHHHHH
Confidence 79999999999996 46799999999999999999999999999999999999876 334332222334589999
Q ss_pred EEEEEec-CCCCCccccccCccccccccccccCCCCHHHHHHHHHHHhhcCchHHHHHHHhhCccccccHHHHHHHHHHH
Q 040742 192 AVSVKNS-KSQSDTEDLQGSNCNARASEQANLFSFSPRDLEFIVKFSEESGSDIFRQIVQSICPSIYGHELVKAGITLAL 270 (581)
Q Consensus 192 a~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l 270 (581)
|..|... |+.. +. ......+++..+.+. ..|+|++|+.|++|+||||+++|+++++.|
T Consensus 300 Ah~v~~~nk~~~---~~------------~~~~~~~~~~~~~~~------~~d~yekLa~SiAPEIyGheDVKKaLLLlL 358 (721)
T KOG0482|consen 300 AHRVVQINKKYD---NI------------EKTGELEPEELELIA------EGDFYEKLAASIAPEIYGHEDVKKALLLLL 358 (721)
T ss_pred Hhhhhhhccccc---cc------------cccccccHHHHHHhh------cccHHHHHHHhhchhhccchHHHHHHHHHh
Confidence 9988432 2211 11 112234555554443 478999999999999999999999999999
Q ss_pred hcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceee
Q 040742 271 FGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMV 350 (581)
Q Consensus 271 ~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~ 350 (581)
+||..+... +++++||+|||+|+|+||++||+|++++.+++|+++|++|.++|+.|||+++.+|+.+|+.+++.|+++
T Consensus 359 VGgvd~~~~--dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALV 436 (721)
T KOG0482|consen 359 VGGVDKSPG--DGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALV 436 (721)
T ss_pred hCCCCCCCC--CCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEE
Confidence 999876553 456799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccc
Q 040742 351 LADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRF 429 (581)
Q Consensus 351 ~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RF 429 (581)
+|++|||||||||+|.+... ++||+||+|+++++|||+.+++++|++|+||+||.+|+|++..++.+||+||+||||||
T Consensus 437 LAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRF 516 (721)
T KOG0482|consen 437 LADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRF 516 (721)
T ss_pred EccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhh
Confidence 99999999999999998766 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHH
Q 040742 430 DLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLL 509 (581)
Q Consensus 430 dli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 509 (581)
|+++++.|.|+.+.|..+|+|+...|+....+. .++.+++.+++
T Consensus 517 Dll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~------------------------------------~~fepl~~~~m 560 (721)
T KOG0482|consen 517 DLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPP------------------------------------LDFEPLDPNLM 560 (721)
T ss_pred hhhhhhccCCcccchHHHHHHhHhhhccCCCCC------------------------------------ccCCCCCHHHH
Confidence 999999999999999999999999998754432 34678999999
Q ss_pred HHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCC-CCCCccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 510 RKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNT-SADSTPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 510 k~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~-~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
|.||.+||+. +|.++++..++|...|+++|+... +.+....|+|.|.+++|+|.|+|||++++.|.++||.
T Consensus 561 R~yI~~ak~~-~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~ 632 (721)
T KOG0482|consen 561 RRYISLAKRK-NPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVN 632 (721)
T ss_pred HHHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHH
Confidence 9999999996 999999999999999999998775 3345577999999999999999999999999999973
No 7
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-90 Score=698.62 Aligned_cols=525 Identities=33% Similarity=0.561 Sum_probs=455.5
Q ss_pred CcHHHHHHHHHHHhccc--c--CC------CCeEEEeccCCCccccccCCCCcccCCcEEEEEEEEEeeccceeEEEEEE
Q 040742 1 KPRMTLSCMTAAVHKNK--L--ED------GMKINIRPYNYPESMIALKNLKAAYIDKLVSVRGTVVKAGTVRPLVVRMD 70 (581)
Q Consensus 1 ~P~~~l~~~~~a~~~~~--~--~~------~~~i~vr~~n~p~~~~~~~~l~s~~igklV~i~G~V~~~s~v~p~~~~~~ 70 (581)
.|.+.||.|+.|+.++. + .+ ..+++|-+..--. ++++|+|+++++.|||.|.|+|+.+|.++.+.+...
T Consensus 83 ~P~~~lp~fEeAa~~Vad~i~~~~~~~E~~~~d~Qv~L~sda~-p~~iR~l~s~~vsklVki~GIiiaAS~v~~kat~l~ 161 (729)
T KOG0481|consen 83 QPADHLPLFEEAAKEVADEITRPRPSGEEVLHDIQVLLTSDAN-PISIRQLKSDHVSKLVKISGIIIAASAVSAKATRLS 161 (729)
T ss_pred ChHhHHHHHHHHHHHHHhhhcCCCcCCCccceeeEEEEecCCC-cccHhHhhhHhhhhheeeccEEEEeeeeeecceEEE
Confidence 38999999999988643 1 11 1235555533222 367999999999999999999999999999999999
Q ss_pred EEeCCCCcEEEEe-eCCC--eecCCcccc-----CCCCCCCCeEEeccccceeeeeEEEeeccccCCCCCCCCCceEEEE
Q 040742 71 FECSKCKSEILRI-FPEG--KFSPPLVCT-----LHGCKSKTFTPIRASARKIDFQKIRLQELLKSQDHEEGRVPRTVEC 142 (581)
Q Consensus 71 ~~C~~C~~~~~~~-~~~~--~~~~p~~C~-----~~~C~~~~f~~~~~~s~~~d~Q~I~lQe~~~~~~~~~g~~p~~i~v 142 (581)
.+|.+|.++.... ...+ .+..|..|. .+.|...+|..+.+.|+|+|+|.+|||| .|+.+|.|.+||++.+
T Consensus 162 l~CrnC~~t~~~~~~~pgl~g~~lPR~C~~~~~~k~~Cp~DPyii~pdks~~vD~QtLKLQE--~pe~VP~GE~PRhl~L 239 (729)
T KOG0481|consen 162 LVCRNCRHTRPNVIMRPGLEGYALPRKCDTPQAGKPKCPLDPYIIMPDKSKCVDQQTLKLQE--LPEDVPVGEMPRHLQL 239 (729)
T ss_pred EEeccccccccceecCCCccccccccccCCcccCCCCCCCCCEEEcccccceeehhheehhh--CcccCCcCcCcchhhh
Confidence 9999999987443 2333 478899998 4689999999999999999999999999 4788999999999999
Q ss_pred EeccCccccccCCCEEEEEEEEEEeecccccCCCccccccccceEEEEEEEEEEecCCCCCccccccCcccccccccccc
Q 040742 143 ELSEDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKSQGFYYLFLEAVSVKNSKSQSDTEDLQGSNCNARASEQANL 222 (581)
Q Consensus 143 ~l~~dlv~~~~pGd~V~v~GIl~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (581)
+++..|++++.||.+|+|+|||.+.......+.+ ....++-..||.+++|+........ ...
T Consensus 240 ~~dRyL~~kvvPG~RvtI~GIYsI~~~~~~~~s~---k~~v~iR~PyirVvGi~~ds~~ss~---------------~~~ 301 (729)
T KOG0481|consen 240 FCDRYLTNKVVPGNRVTIMGIYSIKKFGSTSSSD---KSGVGIRTPYIRVVGIQDDSEGSSR---------------SSA 301 (729)
T ss_pred hhhHHHhccccCCceEEEEEEEEeeeccccCCCC---ccceeeecceEEEEEEEeccCCccc---------------cCc
Confidence 9999999999999999999999987532211111 1234566899999999754321110 234
Q ss_pred CCCCHHHHHHHHHHHhhcCchHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChH
Q 040742 223 FSFSPRDLEFIVKFSEESGSDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGK 302 (581)
Q Consensus 223 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGK 302 (581)
..||++|-+.+++++. .+|+|+.|.+|++|+|||++++|+++.+.|+||..+.++|+- ..||+|||||.|+|||+|
T Consensus 302 ~~ft~eEEEeFk~la~--~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~--~lRGDINVLLLGDPgtAK 377 (729)
T KOG0481|consen 302 TMFTPEEEEEFKKLAA--SPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGV--TLRGDINVLLLGDPGTAK 377 (729)
T ss_pred ccCChhHHHHHHHHhc--CccHHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcc--eeccceeEEEecCCchhH
Confidence 5799999999999986 599999999999999999999999999999999999998754 599999999999999999
Q ss_pred HHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEE
Q 040742 303 SQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCV 381 (581)
Q Consensus 303 T~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i 381 (581)
|+|++++-+.+|-++|++|.+++.+|||+++.+|+.+.+|.++.|++++|||||+||||||+|.++.. ++||+||+|++
T Consensus 378 SQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTI 457 (729)
T KOG0481|consen 378 SQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTI 457 (729)
T ss_pred HHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877 99999999999
Q ss_pred EEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCC
Q 040742 382 SVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEH 461 (581)
Q Consensus 382 ~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~ 461 (581)
+++|||+++.++.|++|+||+||.+|+||+.+...+||++.+.+|||||+||++.|..+++.|..||+|+++.|......
T Consensus 458 SIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~ 537 (729)
T KOG0481|consen 458 SIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANA 537 (729)
T ss_pred HHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999863211
Q ss_pred cccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhh
Q 040742 462 SSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRD 541 (581)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~ 541 (581)
.. ++ +......++.+.+|+||.|||..+.|.|+++|.+.|..+|+.+|+
T Consensus 538 ~~-------~~------------------------~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~ 586 (729)
T KOG0481|consen 538 QT-------DS------------------------QEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRK 586 (729)
T ss_pred cc-------Cc------------------------cccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHH
Confidence 00 00 001234688999999999999999999999999999999999997
Q ss_pred cCC-------CCCCccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 542 HNT-------SADSTPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 542 ~~~-------~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
.-. ...+.|+|+||||.+||++++.|||+|+..+|+.||+
T Consensus 587 ~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~ 633 (729)
T KOG0481|consen 587 GVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVE 633 (729)
T ss_pred HHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHH
Confidence 433 3357899999999999999999999999999999973
No 8
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=100.00 E-value=7.3e-92 Score=721.47 Aligned_cols=524 Identities=36% Similarity=0.591 Sum_probs=462.8
Q ss_pred cHHHHHHHHHHHhccc------cCC-CCeEEEeccCCCccccccCCCCcccCCcEEEEEEEEEeeccceeEEEEEEEEeC
Q 040742 2 PRMTLSCMTAAVHKNK------LED-GMKINIRPYNYPESMIALKNLKAAYIDKLVSVRGTVVKAGTVRPLVVRMDFECS 74 (581)
Q Consensus 2 P~~~l~~~~~a~~~~~------~~~-~~~i~vr~~n~p~~~~~~~~l~s~~igklV~i~G~V~~~s~v~p~~~~~~~~C~ 74 (581)
|.++|..|.+|.++.- |++ ..+||+|+.++|-. ..+|.++-.|+|+||.+.|+|++.|.|+|.+....|.|.
T Consensus 218 p~e~l~I~dr~a~~~v~~~~p~yeri~~~ihvris~lP~~-~~lr~lRq~Hln~Lvr~~GvVtr~tgV~pql~~vky~C~ 296 (854)
T KOG0477|consen 218 PEEMLEIFDRAALEVVLLHYPNYERIHNEIHVRISDLPVC-ESLRSLRQLHLNQLVRTSGVVTRRTGVFPQLSVVKYDCL 296 (854)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhhcccceeeeeecCCcc-ccHHHHHHhccCceEEeeeEEEecceeehhhHHHhhhHH
Confidence 7888999999888642 332 56899999999976 789999999999999999999999999999999999999
Q ss_pred CCCcEEEEeeCCC-eecCCccccCCCCCCCCeEEeccccceeeeeEEEeeccccCCCCCCCCCceEEEEEeccCcccccc
Q 040742 75 KCKSEILRIFPEG-KFSPPLVCTLHGCKSKTFTPIRASARKIDFQKIRLQELLKSQDHEEGRVPRTVECELSEDLVDACI 153 (581)
Q Consensus 75 ~C~~~~~~~~~~~-~~~~p~~C~~~~C~~~~f~~~~~~s~~~d~Q~I~lQe~~~~~~~~~g~~p~~i~v~l~~dlv~~~~ 153 (581)
+||.....++++. ....|..|+.+.|++ +|..+.+...|.+||+|++|| .|..++.|.+||+.+|+|..||||.|+
T Consensus 297 KC~~vlgPF~qs~n~evkp~~C~~cqSkG-pf~vn~e~TvyrnYQritiQE--spg~v~~GrlPRsk~vILl~DLvD~~k 373 (854)
T KOG0477|consen 297 KCGFVLGPFVQSSNSEVKPGSCPECQSKG-PFEVNVEETVYRNYQRITIQE--SPGTVPAGRLPRSKEVILLADLVDSCK 373 (854)
T ss_pred hhCCccCceeeccCceeCCCCCccccCCC-CCccchhhhhhcccceeeecc--CCCcCCCCccccchhheehhhhhhhcC
Confidence 9998877665443 446788998644443 688888889999999999999 577899999999999999999999999
Q ss_pred CCCEEEEEEEEEEeecccccCCCccccccccceEEEEEEEEEEecCCCCCccccccCccccccccccccCCCCHHHHHHH
Q 040742 154 PGDVVTVTGIIRVINNYMDIGGGKSKSKSQGFYYLFLEAVSVKNSKSQSDTEDLQGSNCNARASEQANLFSFSPRDLEFI 233 (581)
Q Consensus 154 pGd~V~v~GIl~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 233 (581)
|||.|.|||||+..+ ++.....+..+.|.+.|+||+|..... ......++++|.+.|
T Consensus 374 pGdEievTGIy~nn~-----d~sLN~kngFpvfatvi~ANhV~~k~~------------------~~~~~~ltded~k~i 430 (854)
T KOG0477|consen 374 PGDEIEVTGIYTNNF-----DGSLNTKNGFPVFATVIEANHVVKKDG------------------KFDVDELTDEDFKEI 430 (854)
T ss_pred CCcceEEeeeecccc-----cccccccCCccccceeheehhhhhhcc------------------ccchhHHhHHHHHHH
Confidence 999999999998644 445545566789999999999964311 123456889999999
Q ss_pred HHHHhhcCchHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 234 VKFSEESGSDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 234 ~~~~~~~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.++++ ++.+-.++++|+||+||||+++|.|+.++|+||..++. +.+.++||++|+||+|+||||||++++++++.+
T Consensus 431 ~~lsk--d~~i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~--~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s 506 (854)
T KOG0477|consen 431 WELSK--DPPIKERIIASIAPSIYGHEDVKRAVALALFGGVPKNP--GGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTS 506 (854)
T ss_pred HHHhc--CccHHHHHHHhhCchhhchHHHHHHHHHHHhcCCccCC--CCCceeccceeEEEecCCCccHHHHHHHHHhcC
Confidence 88887 58899999999999999999999999999999998764 456779999999999999999999999999999
Q ss_pred CCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEee
Q 040742 314 PRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASL 392 (581)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~ 392 (581)
+++++++|.+.+.+|||+++.+++.+++|++++|++++|++|||+|||||+|.+... .+|++||+|.|+++|||+.+.+
T Consensus 507 ~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsL 586 (854)
T KOG0477|consen 507 PRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSL 586 (854)
T ss_pred cceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999998776 9999999999999999999999
Q ss_pred CCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCccccc
Q 040742 393 SARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAY 472 (581)
Q Consensus 393 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 472 (581)
.+||+||||+||..|+|++..++.+|.++.++++||||+.+++.|..|+..|+.+|+++...|...+........
T Consensus 587 qArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~----- 661 (854)
T KOG0477|consen 587 QARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDG----- 661 (854)
T ss_pred HhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999876654311000
Q ss_pred CCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 040742 473 HNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPIT 552 (581)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t 552 (581)
.++ +.-...-.++|.++|++||.|||.+++|+|.+--.+.+...|..||+......+.|+|
T Consensus 662 -----~~e--------------~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piT 722 (854)
T KOG0477|consen 662 -----LEE--------------PQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPIT 722 (854)
T ss_pred -----ccc--------------cccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhh
Confidence 000 0001113579999999999999999999999999999999999999998888889999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 553 ARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 553 ~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
+|.+|++||+++|||||+||+.|+++|+
T Consensus 723 vRHieS~ir~seAhArm~Lr~~V~~~d~ 750 (854)
T KOG0477|consen 723 VRHIESMIRMSEAHARMHLREYVTEEDV 750 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHhHH
Confidence 9999999999999999999999999997
No 9
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=2.7e-88 Score=734.03 Aligned_cols=491 Identities=42% Similarity=0.697 Sum_probs=429.9
Q ss_pred cccCCCCcccCCcEEEEEEEEEeeccceeEEEEEEEEeCCCCcEEEEeeCCCeecCCccccCCCCCCC-CeEEeccccce
Q 040742 36 IALKNLKAAYIDKLVSVRGTVVKAGTVRPLVVRMDFECSKCKSEILRIFPEGKFSPPLVCTLHGCKSK-TFTPIRASARK 114 (581)
Q Consensus 36 ~~~~~l~s~~igklV~i~G~V~~~s~v~p~~~~~~~~C~~C~~~~~~~~~~~~~~~p~~C~~~~C~~~-~f~~~~~~s~~ 114 (581)
.++|+|++.++||||+|+|+|+|+|.|+|++.+++|+|.+|++.++..++.+.+.+|..|++..|++. +|.++.+.|.|
T Consensus 3 ~~~r~l~s~~igklV~v~GiV~r~s~v~p~~~~~~f~C~~C~~~~~~~~~~~~~~~p~~C~~~~C~~~~~f~l~~~~s~~ 82 (509)
T smart00350 3 SSIRELRADHLGKLVRVSGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPTVCPPRECQSPTPFSLNHERSTF 82 (509)
T ss_pred CCcccCCHhHCCCEEEEEEEEEEccCceEEEEEEEEEecCCCCEEeEEecCCcccCCCcCCCCcCCCCCceEeccCCCeE
Confidence 56899999999999999999999999999999999999999999999888899999999998789986 48888889999
Q ss_pred eeeeEEEeeccccCCCCCCCCCceEEEEEeccCccccccCCCEEEEEEEEEEeecccccCCCccccccccceEEEEEEEE
Q 040742 115 IDFQKIRLQELLKSQDHEEGRVPRTVECELSEDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKSQGFYYLFLEAVS 194 (581)
Q Consensus 115 ~d~Q~I~lQe~~~~~~~~~g~~p~~i~v~l~~dlv~~~~pGd~V~v~GIl~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~ 194 (581)
+|||+|+|||+ ++.++.|++|++|+|+|++||||+|+|||+|.|+|||+..+ + +....+.+....|.+||+|++
T Consensus 83 ~D~Q~I~iQE~--~e~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~-~---~~~~~~~~~~~~~~~~l~a~~ 156 (509)
T smart00350 83 IDFQKIKLQES--PEEVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIP-Y---GFKLNTVKGLPVFATYIEANH 156 (509)
T ss_pred EEEEEEEEEcC--cccCCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeec-c---ccccccCCCcceeeEEEEEeE
Confidence 99999999995 57789999999999999999999999999999999999863 1 111111222345899999999
Q ss_pred EEecCCCCCccccccCccccccccccccCCCCHHHHHHHHHHHhhcCchHHHHHHHhhCccccccHHHHHHHHHHHhcCc
Q 040742 195 VKNSKSQSDTEDLQGSNCNARASEQANLFSFSPRDLEFIVKFSEESGSDIFRQIVQSICPSIYGHELVKAGITLALFGGV 274 (581)
Q Consensus 195 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~ 274 (581)
|+........++. ......|+++|++.+.++++ .+++|+.|+++++|.|+|++.+|++++++|++|.
T Consensus 157 i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~ 223 (509)
T smart00350 157 VRKLDYKRSFEDC-----------SFSVQSLSDEEEEEIRKLSK--DPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGV 223 (509)
T ss_pred EEEcccccccccc-----------ccccccCCHHHHHHHHHHhc--CHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCC
Confidence 9764321110000 00123689999999999986 5899999999999999999999999999999998
Q ss_pred ccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCc
Q 040742 275 RKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADS 354 (581)
Q Consensus 275 ~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~ 354 (581)
.+...++ ..+||++||||+|+||||||++|+++++.+++..|+.|...+..++++...+++.+|+|.+++|++++|++
T Consensus 224 ~~~~~~~--~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~ 301 (509)
T smart00350 224 HKNLPDG--MKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADN 301 (509)
T ss_pred ccccCCC--ccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCC
Confidence 7665444 45899999999999999999999999999999999888777788898888888888999999999999999
Q ss_pred eEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeE
Q 040742 355 GLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVF 433 (581)
Q Consensus 355 gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~ 433 (581)
|+|||||+++++++.+ +|+++||+|.+++.++|....++++++||||+||.+|+|++.+++.+|+.|+++++|||||++
T Consensus 302 Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~ 381 (509)
T smart00350 302 GVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLF 381 (509)
T ss_pred CEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEE
Confidence 9999999999999988 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHH
Q 040742 434 ILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYI 513 (581)
Q Consensus 434 ~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi 513 (581)
++.|+|+++.|..|++|+++.|........ ......++.++|++||
T Consensus 382 ~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~yi 427 (509)
T smart00350 382 VVLDEVDEERDRELAKHVVDLHRYSHPEPD----------------------------------EADEVPISQEFLRKYI 427 (509)
T ss_pred EecCCCChHHHHHHHHHHHHhhcccCcccc----------------------------------ccccccCCHHHHHHHH
Confidence 999999999999999999987754211000 0112368899999999
Q ss_pred HHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCC---CCccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 514 AYARTFVFPRMTKPAAEILQKFYLKLRDHNTSA---DSTPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 514 ~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~---~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
.|||+++.|.+|+++.++|.++|.++|...... ...++|+|+|++|+|+|+|+|+|++|+.|+++||+
T Consensus 428 ~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~ 498 (509)
T smart00350 428 AYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVE 498 (509)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Confidence 999998899999999999999999999865432 35789999999999999999999999999999984
No 10
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=9e-64 Score=513.90 Aligned_cols=317 Identities=50% Similarity=0.825 Sum_probs=252.3
Q ss_pred HHHHHHHHhhcCchHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHH
Q 040742 230 LEFIVKFSEESGSDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAA 309 (581)
Q Consensus 230 ~~~i~~~~~~~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~l 309 (581)
.+.|.++++ .+++|+.|+++++|+|+|++.+|++++++|++|..+...+++ ..||++|+||+|+||||||+|++++
T Consensus 2 ~~~i~~l~~--~~~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~--~~r~~ihiLlvGdpg~gKS~ll~~~ 77 (331)
T PF00493_consen 2 EEKIKELSK--KPNIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGT--RIRGNIHILLVGDPGTGKSQLLKYV 77 (331)
T ss_dssp HHHHHCCCC--TTTHHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-T--EE--S--EEEECSCHHCHHHHHHCC
T ss_pred HHHHHHHhc--CCcHHHHHHHHhCCcCcCcHHHHHHHHHHHHhcccccccccc--ccccccceeeccchhhhHHHHHHHH
Confidence 456666665 589999999999999999999999999999999877655433 4899999999999999999999999
Q ss_pred HHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCe
Q 040742 310 AAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGL 388 (581)
Q Consensus 310 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~ 388 (581)
++++|+++|++|.+.+.+|||+++.+++.+++|.+++|++++|++|||||||+++|..+.. +|+++||+|++++.|+|+
T Consensus 78 ~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi 157 (331)
T PF00493_consen 78 AKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGI 157 (331)
T ss_dssp CCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSS
T ss_pred HhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhh
Confidence 9999999999999999999999999998889999999999999999999999999998766 999999999999999999
Q ss_pred eEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCc
Q 040742 389 VASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKP 468 (581)
Q Consensus 389 ~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~ 468 (581)
...++++++|+||+||..|+|++..++.+|++++++|++|||++|++.|.++++.|..+++|+++.|.........
T Consensus 158 ~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~---- 233 (331)
T PF00493_consen 158 VTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEK---- 233 (331)
T ss_dssp EEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S---------
T ss_pred cccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999988764321000
Q ss_pred ccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCC-CCC
Q 040742 469 RTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNT-SAD 547 (581)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~-~~~ 547 (581)
........++.++|++||.|||+++.|.|+++|.++|.+||+++|+... +..
T Consensus 234 ---------------------------~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~ 286 (331)
T PF00493_consen 234 ---------------------------KIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNK 286 (331)
T ss_dssp ------------------------------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS
T ss_pred ---------------------------cccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhccccccccc
Confidence 0001124788899999999999889999999999999999999999773 355
Q ss_pred CccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 548 STPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 548 ~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
..++|+|+||+|||||+|||||++|+.|+++||+
T Consensus 287 ~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~ 320 (331)
T PF00493_consen 287 SIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVE 320 (331)
T ss_dssp -B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhccCceeHHHHH
Confidence 7899999999999999999999999999999973
No 11
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.94 E-value=4e-25 Score=225.39 Aligned_cols=256 Identities=23% Similarity=0.251 Sum_probs=183.5
Q ss_pred ccccccHHHHHHHHHHHh-cCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEecC----------
Q 040742 254 PSIYGHELVKAGITLALF-GGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGN---------- 322 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~-~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~---------- 322 (581)
..|+|++.++++++++++ .|. .|+||.|+||||||++++++++++|.--...+.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~---------------~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~ 72 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGI---------------GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDC 72 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCC---------------CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCC
Confidence 458999999999998776 331 189999999999999999999999741111110
Q ss_pred -----------------------CCccCCceeEEEecCc--cccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHH
Q 040742 323 -----------------------ATTKAGLTVAVVKDSV--TNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAM 376 (581)
Q Consensus 323 -----------------------~~~~~~l~~~~~~~~~--~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~m 376 (581)
..+...++++...+.. +|++.+++|.+..|++|++|+||+++++++.+ .|+++|
T Consensus 73 ~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~m 152 (334)
T PRK13407 73 PEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVA 152 (334)
T ss_pred cccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHH
Confidence 0111224443333332 57888999999999999999999999999998 999999
Q ss_pred HccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhcc
Q 040742 377 EQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHS 456 (581)
Q Consensus 377 e~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~ 456 (581)
+++.+++.+.|....++.++.++||+||..+. ++++|++||.+.+.+....+.+.+..+.........
T Consensus 153 ee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~------------l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~ 220 (334)
T PRK13407 153 QSGENVVEREGLSIRHPARFVLVGSGNPEEGE------------LRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDA 220 (334)
T ss_pred HcCCeEEEECCeEEecCCCEEEEecCCcccCC------------CCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccc
Confidence 99998888889999999999999999997543 889999999887777655554565555433221100
Q ss_pred CCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHH
Q 040742 457 GYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFY 536 (581)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y 536 (581)
.... +. ...........+.+...-...+. ..++++..+++.+..
T Consensus 221 ---~~~~-----------------------~~-------~~~~~~~~~~~~~i~~a~~~~~~---V~v~~~~~~yi~~l~ 264 (334)
T PRK13407 221 ---DHDA-----------------------FM-------AKWGAEDMQLRGRILGARARLPQ---LKTPNTVLHDCAALC 264 (334)
T ss_pred ---cchh-----------------------hh-------ccccccccCCHHHHHHHHHhcCC---cccCHHHHHHHHHHH
Confidence 0000 00 00000112223333333322222 358999999999988
Q ss_pred HHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 537 LKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 537 ~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
..+|.. ++|....|++.|+|+|.+++|+.|+++|++
T Consensus 265 ~~~~~~---------s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~ 300 (334)
T PRK13407 265 IALGSD---------GLRGELTLLRAARALAAFEGAEAVGRSHLR 300 (334)
T ss_pred HHHCCC---------CchHHHHHHHHHHHHHHHcCCCeeCHHHHH
Confidence 887732 789999999999999999999999999973
No 12
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.94 E-value=1.4e-25 Score=240.45 Aligned_cols=269 Identities=23% Similarity=0.317 Sum_probs=194.0
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCc---EEEecCC-CccCCc
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRG---IYVCGNA-TTKAGL 329 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~---~~~~~~~-~~~~~l 329 (581)
.+|+|++.+++++.+++.+|+ |++|+||||+|||++++.++.+++.. ..+.... .+..++
T Consensus 192 ~dv~Gq~~~~~al~~aa~~g~----------------~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~ 255 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAAGGH----------------NLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGK 255 (499)
T ss_pred HHhcCcHHHHhhhhhhccCCC----------------EEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhh
Confidence 458999999999999988874 89999999999999999999988642 1111111 111111
Q ss_pred ee-------EEE--------ecC-ccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEee
Q 040742 330 TV-------AVV--------KDS-VTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASL 392 (581)
Q Consensus 330 ~~-------~~~--------~~~-~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~ 392 (581)
.. ... ... .+|.+...+|.+.+|++|+|||||++.+++..+ .|+++||++.+.+.+.|....+
T Consensus 256 ~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~ 335 (499)
T TIGR00368 256 LIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFY 335 (499)
T ss_pred hccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceec
Confidence 10 000 001 135566889999999999999999999999988 9999999999999999999999
Q ss_pred CCCeEEEEeeCCC-CCCCCCcc--------Chhh-hcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCc
Q 040742 393 SARTSVLAAANPV-GGHYNRAK--------TVNE-NLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHS 462 (581)
Q Consensus 393 ~~~~~viaa~Np~-~g~~~~~~--------~~~~-~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~ 462 (581)
++++.+|||+||. +|.|+... .+.. ..+++.+|+||||+++.+++....+.. + ...++.+
T Consensus 336 pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~--------~--~~~~e~s 405 (499)
T TIGR00368 336 PARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLL--------S--TGSGESS 405 (499)
T ss_pred cCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHh--------c--cCCCCCH
Confidence 9999999999997 78886421 1111 226999999999999998876543210 1 0000000
Q ss_pred ccccCcccccCCCccccccccccchhhhhccCCCCC-CCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhh
Q 040742 463 SAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKD-GDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRD 541 (581)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~ 541 (581)
. .....+..++..++.|+..... .-+..++...+++|+ .+++++.+++...|..+
T Consensus 406 ~-------------~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~---------~l~~~~~~~l~~a~~~~-- 461 (499)
T TIGR00368 406 A-------------EVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFC---------KLSAIDANDLEGALNKL-- 461 (499)
T ss_pred H-------------HHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhc---------CCCHHHHHHHHHHHHhc--
Confidence 0 0001122333344444432100 125678899999986 68999999999988765
Q ss_pred cCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 542 HNTSADSTPITARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 542 ~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
.+|.|...+++|+|++.|.|++++.|+.+|+
T Consensus 462 --------~lS~R~~~rilrvArTiAdL~g~~~i~~~hv 492 (499)
T TIGR00368 462 --------GLSSRATHRILKVARTIADLKEEKNISREHL 492 (499)
T ss_pred --------CCCchHHHHHHHHHHHHHhhcCCCCCCHHHH
Confidence 5799999999999999999999999999997
No 13
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.93 E-value=4.2e-25 Score=225.84 Aligned_cols=256 Identities=23% Similarity=0.267 Sum_probs=186.2
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-----Ee--------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-----VC-------- 320 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-----~~-------- 320 (581)
..|+||+.+|.+++++++... .| |+||.|+||+|||+|+++++.+.+..-- +.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~------------~g--~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK------------IG--GVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC------------CC--eEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 468999999999999998742 11 8999999999999999999998853100 00
Q ss_pred ---------c------------------CCCccCCceeEEEecCc--cccceeccceeeecCceEEEEcCCCCCCHHHH-
Q 040742 321 ---------G------------------NATTKAGLTVAVVKDSV--TNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ- 370 (581)
Q Consensus 321 ---------~------------------~~~~~~~l~~~~~~~~~--~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~- 370 (581)
. .+.+...++++...+.. +|.+.+++|.+..|++|++|+||++++++..|
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~ 149 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVD 149 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHH
Confidence 0 00112234444433332 68899999999999999999999999999998
Q ss_pred HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHH
Q 040742 371 ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEH 450 (581)
Q Consensus 371 ~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~ 450 (581)
.|+++|+++.+.+.+.|....++.++.++||+||.+|. ++++|++||.+.+.+....+.+.+..|.+.
T Consensus 150 ~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~------------l~~~LldRf~l~i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 150 VLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGE------------LRPQLLDRFGLHAEIRTVRDVELRVEIVER 217 (337)
T ss_pred HHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCC------------CCHHHHhhcceEEECCCCCCHHHHHHHHHh
Confidence 89999999988888889999999999999999997543 889999999887766555443555555433
Q ss_pred HHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcCCHHHH
Q 040742 451 IMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVF-PRMTKPAA 529 (581)
Q Consensus 451 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~-p~ls~~a~ 529 (581)
....... ... .... .......+.+-|..+|+.+. ..+++++.
T Consensus 218 ~~~~~~~---~~~-----------------------~~~~-----------~~~e~~~~~~~I~~a~~~~~~V~v~d~~~ 260 (337)
T TIGR02030 218 RTEYDAD---PHA-----------------------FCEK-----------WQTEQEALQAKIVNAQNLLPQVTIPYDVL 260 (337)
T ss_pred hhhcccC---chh-----------------------hhhh-----------hhhhhhcCHHHHHHHHHHhccCcCCHHHH
Confidence 2211000 000 0000 00001225566666666432 23889999
Q ss_pred HHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 530 EILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 530 ~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
+++.+....+|. -++|....++|.|+|+|.+++|+.|+++||+
T Consensus 261 ~~i~~l~~~~~~---------~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~ 303 (337)
T TIGR02030 261 VKVAELCAELDV---------DGLRGELTLNRAAKALAAFEGRTEVTVDDIR 303 (337)
T ss_pred HHHHHHHHHHCC---------CCCcHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 999998888761 1789999999999999999999999999974
No 14
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.93 E-value=8.8e-25 Score=243.18 Aligned_cols=255 Identities=24% Similarity=0.308 Sum_probs=192.8
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcE----------------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGI---------------- 317 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~---------------- 317 (581)
..|+||+.+|++++++++.+.. | +|||.|+||||||++|+++++++|..-
T Consensus 4 ~~ivGq~~~~~al~~~av~~~~------------g--~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDPRI------------G--GVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred chhcChHHHHHHHHHHhhCCCC------------C--eEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 5799999999999999987521 1 799999999999999999999996211
Q ss_pred ------------------EEe-cCCCccCCceeEEEec--CccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHH
Q 040742 318 ------------------YVC-GNATTKAGLTVAVVKD--SVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEA 375 (581)
Q Consensus 318 ------------------~~~-~~~~~~~~l~~~~~~~--~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~ 375 (581)
++. ....+...|.++.... ...|.+.+.+|.+..|++|++||||++++++..+ .|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~ 149 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDA 149 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHH
Confidence 111 0111112222222111 1146677889999999999999999999999988 99999
Q ss_pred HHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhc
Q 040742 376 MEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLH 455 (581)
Q Consensus 376 me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~ 455 (581)
|++|.+.+.+.|....++.++.+|||+||.+|. ++++|++||++.+.+.+..+.+.+..+..+.+...
T Consensus 150 le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~------------l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~ 217 (633)
T TIGR02442 150 AAMGVNRVEREGLSVSHPARFVLIGTMNPEEGD------------LRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFD 217 (633)
T ss_pred HhcCCEEEEECCceeeecCCeEEEEecCCCCCC------------CCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhc
Confidence 999999888889999999999999999997543 88999999999888777666666677766555422
Q ss_pred cCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcCCHHHHHHHHH
Q 040742 456 SGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVF-PRMTKPAAEILQK 534 (581)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~-p~ls~~a~~~i~~ 534 (581)
... . .+..+ .......+.+++..++.... ..+++++.++|..
T Consensus 218 ~~~---~-----------------------~~~~~-----------~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~ 260 (633)
T TIGR02442 218 ADP---E-----------------------AFAAR-----------WAAEQEELRNRIARARSLLPSVRISDSLIRFISE 260 (633)
T ss_pred cCc---H-----------------------HHHHH-----------hhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 110 0 00000 00122357788888887643 2579999999999
Q ss_pred HHHHHhhcCCCCCCccc-cHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 535 FYLKLRDHNTSADSTPI-TARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 535 ~y~~lR~~~~~~~~~~~-t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
++..++ + +.|....++|+|+|+|.|++++.|+++||+
T Consensus 261 ~~~~~~----------i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~ 298 (633)
T TIGR02442 261 LCIEFG----------VDGHRADIVMARAARALAALDGRRRVTAEDVR 298 (633)
T ss_pred HHHHhC----------CCCccHHHHHHHHHHHHHHHcCCCcCCHHHHH
Confidence 998874 3 689999999999999999999999999973
No 15
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.7e-25 Score=229.55 Aligned_cols=268 Identities=24% Similarity=0.335 Sum_probs=190.5
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCc----------EE-EecC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRG----------IY-VCGN 322 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~----------~~-~~~~ 322 (581)
.+|.||+.+|+++..+..||+ |+||+||||||||+||+.+..++|.- ++ +.|.
T Consensus 179 ~DV~GQ~~AKrAleiAAAGgH----------------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~ 242 (490)
T COG0606 179 KDVKGQEQAKRALEIAAAGGH----------------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGD 242 (490)
T ss_pred hhhcCcHHHHHHHHHHHhcCC----------------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccc
Confidence 568999999999999999997 99999999999999999999999861 11 2222
Q ss_pred CCccCCc-eeEEEe--------cC-ccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEe
Q 040742 323 ATTKAGL-TVAVVK--------DS-VTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVAS 391 (581)
Q Consensus 323 ~~~~~~l-~~~~~~--------~~-~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~ 391 (581)
......+ .....+ .. .+|.-..++|.+.+|++||+|+||+-....... +|.+.||+|.+.+.+++..+.
T Consensus 243 ~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ 322 (490)
T COG0606 243 LHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVT 322 (490)
T ss_pred ccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeE
Confidence 2111001 000011 11 145566899999999999999999999998776 999999999999999999999
Q ss_pred eCCCeEEEEeeCCC-CCCCCCccC--------hhhhc-CCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCC
Q 040742 392 LSARTSVLAAANPV-GGHYNRAKT--------VNENL-KMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEH 461 (581)
Q Consensus 392 ~~~~~~viaa~Np~-~g~~~~~~~--------~~~~~-~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~ 461 (581)
+|++|.+++||||+ +|.+..... ...+. +++.+|+||||++.-++..+-.+.... ...++.
T Consensus 323 ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~---------~~~~es 393 (490)
T COG0606 323 YPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQ---------VPTGES 393 (490)
T ss_pred EeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcC---------CCCCCC
Confidence 99999999999998 666554321 11122 599999999999887665432221100 000000
Q ss_pred cccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhh
Q 040742 462 SSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRD 541 (581)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~ 541 (581)
+. .....+..++..+..|.... . .+..++.+.|++|+ .++.++.+++...-..+
T Consensus 394 s~-------------~v~~rVa~AR~~Q~~R~~~~-~-~Na~l~~~~l~k~~---------~L~~~~~~~L~~al~~~-- 447 (490)
T COG0606 394 SA-------------GVRERVAKAREAQIARAGRI-G-INAELSEEALRKFC---------ALQREDADLLKAALERL-- 447 (490)
T ss_pred cH-------------HHHHHHHHHHHHHHHHhhcc-C-cchhcCHHHHHHhc---------ccCHhHHHHHHHHHHhc--
Confidence 00 00001222333333333322 1 35567888899987 68888999988754443
Q ss_pred cCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 542 HNTSADSTPITARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 542 ~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
.+|.|.+.+++|+|++.|.|.+.+.|...|+
T Consensus 448 --------~lS~R~~~rILKvarTiADL~g~~~i~~~hl 478 (490)
T COG0606 448 --------GLSARAYHRILKVARTIADLEGSEQIERSHL 478 (490)
T ss_pred --------chhHHHHHHHHHHHhhhhcccCcchhhHHHH
Confidence 6899999999999999999999999988775
No 16
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.93 E-value=9.8e-25 Score=222.77 Aligned_cols=256 Identities=21% Similarity=0.266 Sum_probs=181.4
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEecC-----------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGN----------- 322 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~----------- 322 (581)
..|+||+.+|+++++++.... + | ++||.|++|||||++++.++++++..-.+.+.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~-----------~-~--~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~ 82 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPK-----------I-G--GVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPEL 82 (350)
T ss_pred HHHhChHHHHHHHHHhccCCC-----------C-C--eEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhh
Confidence 458999999999999998742 1 1 69999999999999999999998642111100
Q ss_pred -----------------------------CCccCCceeEEEec--CccccceeccceeeecCceEEEEcCCCCCCHHHH-
Q 040742 323 -----------------------------ATTKAGLTVAVVKD--SVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ- 370 (581)
Q Consensus 323 -----------------------------~~~~~~l~~~~~~~--~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~- 370 (581)
+.+...+.+++-.. ..+|.+.+++|.+..|++|++|+||++++++..|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~ 162 (350)
T CHL00081 83 MSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD 162 (350)
T ss_pred hchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHH
Confidence 00111111111111 1135667789999999999999999999999999
Q ss_pred HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHH
Q 040742 371 ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEH 450 (581)
Q Consensus 371 ~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~ 450 (581)
.|+++|+++.+++.+.|....++.++.++||+||.+|. ++++|++||.+.+.+....+.+.+..|.+.
T Consensus 163 ~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~------------l~~~LldRf~l~i~l~~~~~~~~e~~il~~ 230 (350)
T CHL00081 163 ILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGE------------LRPQLLDRFGMHAEIRTVKDPELRVKIVEQ 230 (350)
T ss_pred HHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCC------------CCHHHHHHhCceeecCCCCChHHHHHHHHh
Confidence 99999999988888889999999999999999997543 889999999887665544445777776544
Q ss_pred HHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcCCHHHH
Q 040742 451 IMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVF-PRMTKPAA 529 (581)
Q Consensus 451 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~-p~ls~~a~ 529 (581)
....... ... ... ..........+.+.. +|..+. ..++++..
T Consensus 231 ~~~~~~~---~~~-----------------------~~~-------~~~~~~~~~~~~I~~----ar~~~~~V~v~~~~~ 273 (350)
T CHL00081 231 RTSFDKN---PQE-----------------------FRE-------KYEESQEELRSKIVA----AQNLLPKVEIDYDLR 273 (350)
T ss_pred hhccccC---hhh-----------------------hhh-------hhccccccCHHHHHH----HHHhcCCCccCHHHH
Confidence 3211000 000 000 000001122233333 333322 35899999
Q ss_pred HHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 530 EILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 530 ~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
++|.+...++|. -++|....++|.|+|+|.+++|+.|+++||+
T Consensus 274 ~yi~~l~~~~~~---------~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~ 316 (350)
T CHL00081 274 VKISQICSELDV---------DGLRGDIVTNRAAKALAAFEGRTEVTPKDIF 316 (350)
T ss_pred HHHHHHHHHHCC---------CCChHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 999999888862 3799999999999999999999999999974
No 17
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.93 E-value=4.6e-25 Score=235.27 Aligned_cols=266 Identities=23% Similarity=0.334 Sum_probs=188.1
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCc----------EE-EecC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRG----------IY-VCGN 322 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~----------~~-~~~~ 322 (581)
..++|+..+++++.+++.+|+ |++|+|+||+|||+|++.++.+++.. ++ +.|.
T Consensus 191 ~~v~Gq~~~~~al~laa~~G~----------------~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~ 254 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAAGGH----------------NLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNA 254 (506)
T ss_pred EEEECcHHHHhhhheeccCCc----------------EEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcc
Confidence 357899999999988888875 89999999999999999999988742 11 1121
Q ss_pred CCccCCceeEEEecC---------ccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEee
Q 040742 323 ATTKAGLTVAVVKDS---------VTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASL 392 (581)
Q Consensus 323 ~~~~~~l~~~~~~~~---------~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~ 392 (581)
.....++.....+.+ .+|.+...+|.+.+|++|++|+||++.+++..+ .|+++||+|.+++.+.|....+
T Consensus 255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~ 334 (506)
T PRK09862 255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITY 334 (506)
T ss_pred ccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceec
Confidence 111111111111111 246677899999999999999999999999888 9999999999999999999999
Q ss_pred CCCeEEEEeeCCC-CCCCCCcc------Chhhh-cCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCccc
Q 040742 393 SARTSVLAAANPV-GGHYNRAK------TVNEN-LKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSA 464 (581)
Q Consensus 393 ~~~~~viaa~Np~-~g~~~~~~------~~~~~-~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~ 464 (581)
+++|.+|||+||. +|.|.... ....+ -+++.+++||||+.+.++..+..+ +.......+....
T Consensus 335 pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~---------l~~~~~~~ess~~ 405 (506)
T PRK09862 335 PARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGI---------LSKTVVPGESSAT 405 (506)
T ss_pred cCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHH---------HhcccCCCCChHH
Confidence 9999999999997 78775321 11122 259999999999988876544321 1110000010000
Q ss_pred ccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCC
Q 040742 465 AKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNT 544 (581)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~ 544 (581)
.. ..+...+..++.+ .. .-+..++...+++|+ .+++++.+++..+|..+
T Consensus 406 i~-------------~rV~~ar~~q~~r-~~---~~n~~l~~~~l~~~~---------~l~~~~~~~l~~~~~~~----- 454 (506)
T PRK09862 406 VK-------------QRVMAARERQFKR-QN---KLNAWLDSPEIRQFC---------KLESEDARWLEETLIHL----- 454 (506)
T ss_pred HH-------------HHHhhHHHHHHHH-HH---HHhcccCHHHHHHHh---------CCCHHHHHHHHHHHHHc-----
Confidence 00 0011112221111 00 113456677788887 68999999999988765
Q ss_pred CCCCccccHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 545 SADSTPITARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 545 ~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
.+|.|....++|+|++.|.|++++.|+++|+
T Consensus 455 -----~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv 485 (506)
T PRK09862 455 -----GLSIRAWQRLLKVARTIADIDQSDIITRQHL 485 (506)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 5799999999999999999999999999997
No 18
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.92 E-value=2.5e-24 Score=236.80 Aligned_cols=246 Identities=23% Similarity=0.189 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcE-EEec-CCCccCCceeEEEec-
Q 040742 260 ELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGI-YVCG-NATTKAGLTVAVVKD- 336 (581)
Q Consensus 260 e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~-~~~~-~~~~~~~l~~~~~~~- 336 (581)
+.+|.|+++..+.... .||||.|+||||||++++++++.++... |+.. ...+...|.+.....
T Consensus 1 ~~~~~Al~l~av~p~~--------------g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~ 66 (589)
T TIGR02031 1 ERAKLALTLLAVDPSL--------------GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEE 66 (589)
T ss_pred ChHHHHHHHhccCCCc--------------ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhh
Confidence 4678899888887631 1899999999999999999999998642 3221 122333444443111
Q ss_pred -CccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccC
Q 040742 337 -SVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKT 414 (581)
Q Consensus 337 -~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~ 414 (581)
..+|.+.+++|.+..|++|++||||++++++..+ .|+++|+++.+++.+.|....++.+|.+|||+||....
T Consensus 67 ~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~------ 140 (589)
T TIGR02031 67 SLAGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG------ 140 (589)
T ss_pred hhhcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc------
Confidence 1257788999999999999999999999999998 99999999999999999999999999999999997411
Q ss_pred hhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccC
Q 040742 415 VNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLD 494 (581)
Q Consensus 415 ~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (581)
..++++|++||++.+.+.+.++.++...|.++.+..+..
T Consensus 141 ----g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~------------------------------------- 179 (589)
T TIGR02031 141 ----GGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVF------------------------------------- 179 (589)
T ss_pred ----CCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhh-------------------------------------
Confidence 128999999999988888888777777776665521100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCC-cCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCC
Q 040742 495 PKKDGDFHPLPAPLLRKYIAYARTFVFP-RMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLRE 573 (581)
Q Consensus 495 ~~~~~~~~~i~~~~lk~yi~~ar~~i~p-~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~ 573 (581)
........++++|..||..+.. .+++++.++|..++..++ ..+.|....++|+|+|+|.|++|+
T Consensus 180 ------~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~g---------v~s~Ra~i~~~r~ArA~Aal~gr~ 244 (589)
T TIGR02031 180 ------RMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLG---------ISGHRADLFAVRAAKAHAALHGRT 244 (589)
T ss_pred ------hcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcC---------CCCccHHHHHHHHHHHHHHHhCCC
Confidence 0012345688999999886443 379999999999987663 125899999999999999999999
Q ss_pred CCCccccC
Q 040742 574 EITAEDAL 581 (581)
Q Consensus 574 ~V~~~Dv~ 581 (581)
.|+++||+
T Consensus 245 ~V~~~Dv~ 252 (589)
T TIGR02031 245 EVTEEDLK 252 (589)
T ss_pred CCCHHHHH
Confidence 99999974
No 19
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.92 E-value=2.1e-23 Score=218.38 Aligned_cols=261 Identities=16% Similarity=0.206 Sum_probs=189.2
Q ss_pred HHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCc---EEEe
Q 040742 244 IFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRG---IYVC 320 (581)
Q Consensus 244 ~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~---~~~~ 320 (581)
.+..|.+.+...|+|++++.+.++.++.+|. |+||.||||||||++|+++++.+... .+..
T Consensus 10 ~i~~l~~~l~~~i~gre~vI~lll~aalag~----------------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~ 73 (498)
T PRK13531 10 RISRLSSALEKGLYERSHAIRLCLLAALSGE----------------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLM 73 (498)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHccCC----------------CEEEECCCChhHHHHHHHHHHHhcccCcceeee
Confidence 4677899999999999999999999998874 99999999999999999999987642 1222
Q ss_pred cCCCccCCceeEE-EecC-ccccce-eccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCe
Q 040742 321 GNATTKAGLTVAV-VKDS-VTNDYA-FEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSART 396 (581)
Q Consensus 321 ~~~~~~~~l~~~~-~~~~-~~~~~~-~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~ 396 (581)
....+..++++.. .+.. ..|.+. ..+|.+..++ ++|+|||+++++..+ +|+++|+++.++. +|....+|.++
T Consensus 74 ~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~rf 149 (498)
T PRK13531 74 TRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRL 149 (498)
T ss_pred eeecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCcE
Confidence 2222344555543 1221 245553 5677765554 999999999999999 9999999999987 48888999988
Q ss_pred EEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCH-HHHHHHHHHHHhhccCCCCCcccccCcccccCCC
Q 040742 397 SVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDE-LLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNT 475 (581)
Q Consensus 397 ~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~-~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~ 475 (581)
.++|+ |+.... -.+.+++++|| ++.+..++++. +....+ +..+.......
T Consensus 150 iv~AT-N~LPE~----------g~~leAL~DRF-liri~vp~l~~~~~e~~l----L~~~~~~~~~~------------- 200 (498)
T PRK13531 150 LVTAS-NELPEA----------DSSLEALYDRM-LIRLWLDKVQDKANFRSM----LTSQQDENDNP------------- 200 (498)
T ss_pred EEEEC-CCCccc----------CCchHHhHhhE-EEEEECCCCCchHHHHHH----HHcccccccCC-------------
Confidence 88888 864210 01557999999 77777787763 443444 32211000000
Q ss_pred ccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHH
Q 040742 476 EGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQ 555 (581)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~ 555 (581)
......++.+.+......++.- .++++..++|.+....+|+... ...+|+|.
T Consensus 201 ----------------------~~~~~vis~eel~~lq~~v~~V---~v~d~v~eyI~~L~~~lr~~r~---~~~~SpR~ 252 (498)
T PRK13531 201 ----------------------VPASLQITDEEYQQWQKEIGKI---TLPDHVFELIFQLRQQLDALPN---APYVSDRR 252 (498)
T ss_pred ----------------------CcccCCCCHHHHHHHHHHhcce---eCCHHHHHHHHHHHHHHhcCCC---CCCcCcHH
Confidence 0012347777777776666553 6899999999888777764432 22489999
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccC
Q 040742 556 LESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 556 leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
+..++++|+|+|.+++|+.|+++|+.
T Consensus 253 ~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 253 WKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 99999999999999999999999973
No 20
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.91 E-value=1.3e-24 Score=203.95 Aligned_cols=169 Identities=25% Similarity=0.400 Sum_probs=99.2
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEec----CCCccCC-
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCG----NATTKAG- 328 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~----~~~~~~~- 328 (581)
.+|.||+.+|+|+++++.+++ |+||+||||||||++|+.+..++|.--.... ...+..+
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~h----------------~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGGH----------------HLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC------------------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhcCcHHHHHHHHHHHcCCC----------------CeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 579999999999999999985 9999999999999999999999986222110 0011111
Q ss_pred -----cee-EEEecC---------ccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEee
Q 040742 329 -----LTV-AVVKDS---------VTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASL 392 (581)
Q Consensus 329 -----l~~-~~~~~~---------~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~ 392 (581)
+.. ...+.+ .+|.....||.+.+|++||+|+||++.+++... +|++.||++.+++.++|..+.+
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~ 146 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTY 146 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEE
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEE
Confidence 110 111111 134557899999999999999999999998876 9999999999999999999999
Q ss_pred CCCeEEEEeeCCC-CCCCCCc--------cChhhhc-CCChhhhccccEeEEcCCC
Q 040742 393 SARTSVLAAANPV-GGHYNRA--------KTVNENL-KMSAALLSRFDLVFILLDK 438 (581)
Q Consensus 393 ~~~~~viaa~Np~-~g~~~~~--------~~~~~~~-~l~~all~RFdli~~~~d~ 438 (581)
|++|.++||+||. +|.|... ..+..+. +++.+|+||||+.+.++..
T Consensus 147 Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~ 202 (206)
T PF01078_consen 147 PARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRV 202 (206)
T ss_dssp B--EEEEEEE-S--------------------------------------------
T ss_pred ecccEEEEEecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999998 6766521 1223333 6999999999997776543
No 21
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.89 E-value=3.6e-22 Score=202.70 Aligned_cols=247 Identities=23% Similarity=0.288 Sum_probs=180.2
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEecC----------
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGN---------- 322 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~---------- 322 (581)
...++|++.+|.+|++..+... +. .+|+-|+.|||||+++|+++.++|....+.|.
T Consensus 16 f~aivGqd~lk~aL~l~av~P~-----------ig---gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQ-----------IG---GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccc-----------cc---eeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 3568999999999999866432 11 69999999999999999999999864433222
Q ss_pred -----------------------------CCccCC-ceeEEEec--CccccceeccceeeecCceEEEEcCCCCCCHHHH
Q 040742 323 -----------------------------ATTKAG-LTVAVVKD--SVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ 370 (581)
Q Consensus 323 -----------------------------~~~~~~-l~~~~~~~--~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~ 370 (581)
..+..+ +.+++-.. ...|.-.++||.+..|++||+++||++.+++..+
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lv 161 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLV 161 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHH
Confidence 111111 22222111 1136667999999999999999999999999998
Q ss_pred -HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHH
Q 040742 371 -ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSE 449 (581)
Q Consensus 371 -~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~ 449 (581)
.|+.+++.|.-.+.+.|+..++|++|.+||||||..|. |.++|+|||++.+-.-...+.+....|.+
T Consensus 162 d~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGe------------LrpqLlDRfg~~v~~~~~~~~~~rv~Ii~ 229 (423)
T COG1239 162 DALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGE------------LRPQLLDRFGLEVDTHYPLDLEERVEIIR 229 (423)
T ss_pred HHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccc------------cchhhHhhhcceeeccCCCCHHHHHHHHH
Confidence 99999999877777779999999999999999998765 88999999998776655666667777765
Q ss_pred HHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHH----------HHHHHHHHHhc
Q 040742 450 HIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPL----------LRKYIAYARTF 519 (581)
Q Consensus 450 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------lk~yi~~ar~~ 519 (581)
.-+.+. ..|..+ |+.-+.-||+.
T Consensus 230 r~~~f~-----------------------------------------------~~Pe~f~~~~~~~~~~lR~~ii~ar~~ 262 (423)
T COG1239 230 RRLAFE-----------------------------------------------AVPEAFLEKYADAQRALRARIIAARSL 262 (423)
T ss_pred HHHHhh-----------------------------------------------cCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555431 112223 44344445543
Q ss_pred CC-CcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 520 VF-PRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 520 i~-p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
+. ..+++++...+...-..+- --+.|.-..++|.|.|+|.+.++..|+.+|++
T Consensus 263 l~~V~l~~~~~~~ia~~~~~~~---------v~g~radi~~~r~a~a~aa~~Gr~~v~~~Di~ 316 (423)
T COG1239 263 LSEVELDDDAETKIAELCARLA---------VDGHRADIVVVRAAKALAALRGRTEVEEEDIR 316 (423)
T ss_pred cccccCcHHHHHHHHHHHHHhc---------cCCCchhhHHHHHHHHHHHhcCceeeehhhHH
Confidence 22 2256666666665433321 11488899999999999999999999999874
No 22
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.89 E-value=9e-22 Score=203.60 Aligned_cols=267 Identities=26% Similarity=0.325 Sum_probs=197.8
Q ss_pred HHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-Eec-
Q 040742 244 IFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCG- 321 (581)
Q Consensus 244 ~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~- 321 (581)
....+...+.+.++|.+.+...++.++..|. |+||.|+||||||+|++.+|+.+...+. +..
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~~----------------~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t 77 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALLAGG----------------HVLLEGPPGVGKTLLARALARALGLPFVRIQCT 77 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHHcCC----------------CEEEECCCCccHHHHHHHHHHHhCCCeEEEecC
Confidence 3445667778889999999999999998874 9999999999999999999999986665 433
Q ss_pred CCCccCCceeEEEecCc---cccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCee-EeeCCCe
Q 040742 322 NATTKAGLTVAVVKDSV---TNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLV-ASLSART 396 (581)
Q Consensus 322 ~~~~~~~l~~~~~~~~~---~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~-~~~~~~~ 396 (581)
......++++....... .+.+.+.+|.+..+.++++++|||++++++.+ +|+++|+++.+++. +.. ..++..+
T Consensus 78 ~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~--~~~~~~~~~~f 155 (329)
T COG0714 78 PDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVP--GLTTIRLPPPF 155 (329)
T ss_pred CCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEEC--CcCCcCCCCCC
Confidence 34456777777766655 67788899999977678999999999999999 99999999999997 666 8899999
Q ss_pred EEEEeeCCC--CCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCC
Q 040742 397 SVLAAANPV--GGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHN 474 (581)
Q Consensus 397 ~viaa~Np~--~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~ 474 (581)
.++||+||. .|.+. +++|+++|| ++.+..++|+.+....+. +...........
T Consensus 156 ~viaT~Np~e~~g~~~----------l~eA~ldRf-~~~~~v~yp~~~~e~~~i---~~~~~~~~~~~~----------- 210 (329)
T COG0714 156 IVIATQNPGEYEGTYP----------LPEALLDRF-LLRIYVDYPDSEEEERII---LARVGGVDELDL----------- 210 (329)
T ss_pred EEEEccCccccCCCcC----------CCHHHHhhE-EEEEecCCCCchHHHHHH---HHhCcccccccc-----------
Confidence 999999987 56666 999999999 567778999555444331 221111000000
Q ss_pred CccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHH
Q 040742 475 TEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITAR 554 (581)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R 554 (581)
.......++...+.++-.... ...+++++.+++.......|.... ....++.|
T Consensus 211 ----------------------~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~s~r 263 (329)
T COG0714 211 ----------------------ESLVKPVLSDEELLRLQKEVK---KVPVSDEVIDYIVTLVAALREAPD--VALGASPR 263 (329)
T ss_pred ----------------------chhhhhhhCHHHHHHHHhhhc---cCCchHHHHHHHHHHHHhhccccc--hhccCCch
Confidence 000011222222222222111 346788888888888877775432 24567899
Q ss_pred HHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 555 QLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 555 ~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
....++..+++.|.+.++..+.++|+
T Consensus 264 ~~~~~~~~~~~~a~~~~~~~~~~~dv 289 (329)
T COG0714 264 ASLALLAALRALALLDGRDAVIPDDV 289 (329)
T ss_pred hHHHHHHHHHhhhhhcCccccCHHHH
Confidence 99999999999999999999999886
No 23
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.86 E-value=8.6e-22 Score=169.60 Aligned_cols=124 Identities=31% Similarity=0.464 Sum_probs=92.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecC-CCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGN-ATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE 368 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~ 368 (581)
|+||.|+||+|||++++++|+.++..+. +... .....++++..+.+..++.+.+.+|.+. .+|+++||||++++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif---~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF---TNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh---hceeeecccccCCHH
Confidence 8999999999999999999999987665 4332 3457788898888887889999999998 679999999999999
Q ss_pred HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC--CCCCCCccChhhhcCCChhhhccc
Q 040742 369 HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV--GGHYNRAKTVNENLKMSAALLSRF 429 (581)
Q Consensus 369 ~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~--~g~~~~~~~~~~~~~l~~all~RF 429 (581)
.| +|+++|+++.+++. |..+.+|..+.||||.||. .|.|. |+++++|||
T Consensus 78 tQsAlLeam~Er~Vt~~--g~~~~lp~pf~ViATqNp~e~~Gty~----------Lpea~~DRF 129 (131)
T PF07726_consen 78 TQSALLEAMEERQVTID--GQTYPLPDPFFVIATQNPVEQEGTYP----------LPEAQLDRF 129 (131)
T ss_dssp HHHHHHHHHHHSEEEET--TEEEE--SS-EEEEEE-TT--S----------------HHHHTTS
T ss_pred HHHHHHHHHHcCeEEeC--CEEEECCCcEEEEEecCccccCceec----------CCHHHhccc
Confidence 99 99999999999997 9999999999999999997 67777 999999999
No 24
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.86 E-value=9.1e-21 Score=206.62 Aligned_cols=231 Identities=18% Similarity=0.115 Sum_probs=170.1
Q ss_pred cHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC--cEEEecCCCccCCceeEEEec
Q 040742 259 HELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR--GIYVCGNATTKAGLTVAVVKD 336 (581)
Q Consensus 259 ~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~--~~~~~~~~~~~~~l~~~~~~~ 336 (581)
++.+|.++++..+.... +. .||+-|++|||||++++.++.++|. .+.--..+.+...|.++.-.+
T Consensus 8 ~~~~~~Al~l~av~p~~----------~g---Gv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~ 74 (584)
T PRK13406 8 WADAALAAALLAVDPAG----------LG---GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLA 74 (584)
T ss_pred HHHHHHHHHHhCcCccc----------cc---eEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHH
Confidence 78999999988886521 22 5999999999999999999999986 222222333444454443111
Q ss_pred C--ccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCcc
Q 040742 337 S--VTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAK 413 (581)
Q Consensus 337 ~--~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~ 413 (581)
. ..|...+++|.+.+||+||+|+||++++++..+ .|+++|++|.+++.++|.+.++|++|.+||+.|+....+.
T Consensus 75 ~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~--- 151 (584)
T PRK13406 75 ATLRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDER--- 151 (584)
T ss_pred hHhhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccC---
Confidence 1 135666899999999999999999999999988 9999999999999999999999999999999877522232
Q ss_pred ChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhcc
Q 040742 414 TVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRL 493 (581)
Q Consensus 414 ~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (581)
++++|+||||+.+.+......+.. . .
T Consensus 152 -------L~~~lLDRf~l~v~v~~~~~~~~~--------~------~--------------------------------- 177 (584)
T PRK13406 152 -------APAALADRLAFHLDLDGLALRDAR--------E------I--------------------------------- 177 (584)
T ss_pred -------CCHHhHhheEEEEEcCCCChHHhc--------c------c---------------------------------
Confidence 999999999987765544333221 0 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccc-cHHHHHHHHHHHHHHHhccCC
Q 040742 494 DPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPI-TARQLESLVRLAEARARLDLR 572 (581)
Q Consensus 494 ~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~-t~R~leslirla~a~A~l~~~ 572 (581)
..+.+.+.+...... +..++++..+++...+..+ ++ |.|....++|+|+|+|.|+++
T Consensus 178 ---------~~~~~~I~~AR~rl~---~v~v~~~~l~~i~~~~~~~----------gv~S~Ra~i~llraARa~AaL~Gr 235 (584)
T PRK13406 178 ---------PIDADDIAAARARLP---AVGPPPEAIAALCAAAAAL----------GIASLRAPLLALRAARAAAALAGR 235 (584)
T ss_pred ---------CCCHHHHHHHHHHHc---cCCCCHHHHHHHHHHHHHh----------CCCCcCHHHHHHHHHHHHHHHcCC
Confidence 001111222111111 3357888887777666543 45 999999999999999999999
Q ss_pred CCCCccccC
Q 040742 573 EEITAEDAL 581 (581)
Q Consensus 573 ~~V~~~Dv~ 581 (581)
+.|+.+||.
T Consensus 236 ~~V~~~dv~ 244 (584)
T PRK13406 236 TAVEEEDLA 244 (584)
T ss_pred CCCCHHHHH
Confidence 999999973
No 25
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.82 E-value=1e-18 Score=175.72 Aligned_cols=155 Identities=18% Similarity=0.205 Sum_probs=113.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-Eec-CCCccCCceeEEEecCc--cccceeccceeeec--CceEEEEcCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCG-NATTKAGLTVAVVKDSV--TNDYAFEAGAMVLA--DSGLCCIDEFDK 364 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~g~l~~a--~~gil~iDEi~~ 364 (581)
|+||.|+||||||++++.+|+.++..++ ++. ...+..++++....... .+.+.+..|.+..| .++++++||+|+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~ 145 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDA 145 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhc
Confidence 8999999999999999999999987665 433 23345566665433211 12356788888765 577899999999
Q ss_pred CCHHHH-HHHHHHH-ccEEEEeeCCeeEeeCCCeEEEEeeCCCC-CCCCCccChhhhcCCChhhhccccEeEEcCCCCCH
Q 040742 365 MSAEHQ-ALLEAME-QQCVSVAKAGLVASLSARTSVLAAANPVG-GHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDE 441 (581)
Q Consensus 365 ~~~~~~-~L~~~me-~~~i~i~k~g~~~~~~~~~~viaa~Np~~-g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~ 441 (581)
++++.+ .|+.+|| .+.+++...+.....+..|.++||+||.+ |. ...-......+++|++||| ++.+..++|++
T Consensus 146 a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd--~~G~y~Gt~~l~~A~lDRF-~i~~~~~Yp~~ 222 (327)
T TIGR01650 146 GRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGD--TTGLYHGTQQINQAQMDRW-SIVTTLNYLEH 222 (327)
T ss_pred cCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCC--CCcceeeeecCCHHHHhhe-eeEeeCCCCCH
Confidence 999988 8999999 46888876666666677899999999963 11 0000111123999999999 65666799999
Q ss_pred HHHHHHH
Q 040742 442 LLDKRVS 448 (581)
Q Consensus 442 ~~d~~i~ 448 (581)
+.+..|.
T Consensus 223 e~E~~Il 229 (327)
T TIGR01650 223 DNEAAIV 229 (327)
T ss_pred HHHHHHH
Confidence 8888773
No 26
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.82 E-value=5.7e-19 Score=176.54 Aligned_cols=202 Identities=21% Similarity=0.285 Sum_probs=140.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCC-ccCCceeEEEe----------------cCccccceeccceeee-
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNAT-TKAGLTVAVVK----------------DSVTNDYAFEAGAMVL- 351 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~-~~~~l~~~~~~----------------~~~~~~~~~~~g~l~~- 351 (581)
|+||.||||||||++|+++++.++..+. +++... ...++.+.... ........+.+|++..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 8999999999999999999998877665 444321 22233322110 0001122345777765
Q ss_pred -cCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeC---CeeEeeCCCeEEEEeeCCC--CCCCCCccChhhhcCCChh
Q 040742 352 -ADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKA---GLVASLSARTSVLAAANPV--GGHYNRAKTVNENLKMSAA 424 (581)
Q Consensus 352 -a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~---g~~~~~~~~~~viaa~Np~--~g~~~~~~~~~~~~~l~~a 424 (581)
+.+++++|||+++++++.+ .|+++|+++.+++... +.....+.++.+|+|+||. .|... ++++
T Consensus 103 ~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~----------l~~a 172 (262)
T TIGR02640 103 VREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE----------TQDA 172 (262)
T ss_pred HHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec----------ccHH
Confidence 4789999999999999998 9999999999888632 2345577889999999986 34443 7899
Q ss_pred hhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCC
Q 040742 425 LLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPL 504 (581)
Q Consensus 425 ll~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 504 (581)
|++|| . .+..++|+.+.+..|.
T Consensus 173 L~~R~-~-~i~i~~P~~~~e~~Il-------------------------------------------------------- 194 (262)
T TIGR02640 173 LLDRL-I-TIFMDYPDIDTETAIL-------------------------------------------------------- 194 (262)
T ss_pred HHhhc-E-EEECCCCCHHHHHHHH--------------------------------------------------------
Confidence 99998 4 4556888887777662
Q ss_pred CHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 505 PAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 505 ~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
++.. .+.++..+.+.+.+.++|... .....++|++..+.|.+.++ .++..|+++|+
T Consensus 195 -----~~~~---------~~~~~~~~~iv~~~~~~R~~~---~~~~~~~r~~i~~~~~~~~~---~~~~~~~~~~~ 250 (262)
T TIGR02640 195 -----RAKT---------DVAEDSAATIVRLVREFRASG---DEITSGLRASLMIAEVATQQ---DIPVDVDDEDF 250 (262)
T ss_pred -----HHhh---------CCCHHHHHHHHHHHHHHHhhC---CccCCcHHHHHHHHHHHHHc---CCCCCCCcHHH
Confidence 2211 245667777778888888322 12345688887766666555 66999999986
No 27
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.78 E-value=6.7e-18 Score=186.32 Aligned_cols=163 Identities=24% Similarity=0.245 Sum_probs=120.2
Q ss_pred eccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCC-----e---eEeeCCCeEEEEeeCCCCCCCCCccC
Q 040742 344 FEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAG-----L---VASLSARTSVLAAANPVGGHYNRAKT 414 (581)
Q Consensus 344 ~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g-----~---~~~~~~~~~viaa~Np~~g~~~~~~~ 414 (581)
.++|.+..|++|++||||++.+++..| .|+++|+++.+.+.... . ....|+++.+|+++|+...
T Consensus 208 i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l------- 280 (608)
T TIGR00764 208 VEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL------- 280 (608)
T ss_pred CCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH-------
Confidence 579999999999999999999998888 99999999999886321 1 2356789999999998411
Q ss_pred hhhhcCCChhhhcccc---EeEEcCCCC--CHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhh
Q 040742 415 VNENLKMSAALLSRFD---LVFILLDKP--DELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVS 489 (581)
Q Consensus 415 ~~~~~~l~~all~RFd---li~~~~d~~--~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (581)
..++++|++||+ +.+.+.+.. +.+....++.++..
T Consensus 281 ----~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~------------------------------------ 320 (608)
T TIGR00764 281 ----EGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQ------------------------------------ 320 (608)
T ss_pred ----hhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHH------------------------------------
Confidence 128899999999 655554432 22222222222221
Q ss_pred hhccCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHh
Q 040742 490 KLRLDPKKDGDFHPLPAPLLRKYIAYARTF-VFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARAR 568 (581)
Q Consensus 490 ~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~-i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~ 568 (581)
.++++ ..|.++++|.+.|.++|... .......+++.|++..++|.|.+.|+
T Consensus 321 -------------------------~~~r~G~l~~~s~~Av~~Li~~~~R~---ag~r~~lsl~~R~L~~llR~A~~iA~ 372 (608)
T TIGR00764 321 -------------------------EVKKDGRIPHFTRDAVEEIVREAQRR---AGRKDHLTLRLRELGGLVRAAGDIAK 372 (608)
T ss_pred -------------------------HHHHhCCCCcCCHHHHHHHHHHHHHH---HhcccccCCCHHHHHHHHHHHHHHHH
Confidence 12222 35689999999999887653 12223567899999999999999999
Q ss_pred ccCCCCCCccccC
Q 040742 569 LDLREEITAEDAL 581 (581)
Q Consensus 569 l~~~~~V~~~Dv~ 581 (581)
.++++.|+.+||+
T Consensus 373 ~~~~~~I~~ehV~ 385 (608)
T TIGR00764 373 SSGKVYVTAEHVL 385 (608)
T ss_pred hcCCceecHHHHH
Confidence 9999999999973
No 28
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.76 E-value=6.3e-18 Score=159.71 Aligned_cols=156 Identities=24% Similarity=0.351 Sum_probs=93.9
Q ss_pred HHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCcc
Q 040742 248 IVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTK 326 (581)
Q Consensus 248 l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~ 326 (581)
+...-..+++||+.++..+...+-....+. ..+ .|+||+||||+|||+||+.+|+.+...+. ++|.....
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~----~~l-----~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRG----EAL-----DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTT----S--------EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcC----CCc-----ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 444455679999999988655444321110 001 29999999999999999999999988776 44432211
Q ss_pred CCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEe-eCC---eeEeeC-CCeEEEE
Q 040742 327 AGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVA-KAG---LVASLS-ARTSVLA 400 (581)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~-k~g---~~~~~~-~~~~via 400 (581)
.+..+.. ...+..+.|+|||||+++++..| .|+.+||++.+.+. ..| .+.+++ .+|++|+
T Consensus 89 ~~dl~~i--------------l~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 89 AGDLAAI--------------LTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp CHHHHHH--------------HHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred HHHHHHH--------------HHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 1110000 01123577999999999999988 99999999999664 223 223332 4599999
Q ss_pred eeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCC
Q 040742 401 AANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKP 439 (581)
Q Consensus 401 a~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~ 439 (581)
|++.. |. ++++|.+||.++.-+--+.
T Consensus 155 ATTr~-g~------------ls~pLrdRFgi~~~l~~Y~ 180 (233)
T PF05496_consen 155 ATTRA-GL------------LSSPLRDRFGIVLRLEFYS 180 (233)
T ss_dssp EESSG-CC------------TSHCCCTTSSEEEE----T
T ss_pred eeccc-cc------------cchhHHhhcceecchhcCC
Confidence 99875 22 8999999998876543333
No 29
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.72 E-value=4e-16 Score=170.45 Aligned_cols=243 Identities=23% Similarity=0.271 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHhhcCchHHHHHHHhhCc----cccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChH
Q 040742 227 PRDLEFIVKFSEESGSDIFRQIVQSICP----SIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGK 302 (581)
Q Consensus 227 ~~~~~~i~~~~~~~~~~~~~~l~~s~~p----~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGK 302 (581)
.++++.+.++... .+-..+.+..-| +++|++...+.+..++.+... .|+||+|||||||
T Consensus 37 ~~~~~~~~~~~~~---~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~--------------~~vLi~Ge~GtGK 99 (531)
T TIGR02902 37 KKELEKLNKMRAI---RLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNP--------------QHVIIYGPPGVGK 99 (531)
T ss_pred hHHHHHHHHhhhh---hhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCC--------------ceEEEECCCCCCH
Confidence 3555666555431 122234444444 699999999998877765421 3999999999999
Q ss_pred HHHHHHHHHHCC----------CcEE-EecCC--CccCC----ceeEEEecC---------ccccceeccceeeecCceE
Q 040742 303 SQLLQAAAAVSP----------RGIY-VCGNA--TTKAG----LTVAVVKDS---------VTNDYAFEAGAMVLADSGL 356 (581)
Q Consensus 303 T~la~~la~~~~----------~~~~-~~~~~--~~~~~----l~~~~~~~~---------~~~~~~~~~g~l~~a~~gi 356 (581)
|++|+++++.+. ..+. ++... ....+ +.++. .++ ..|.....+|.+..|++|+
T Consensus 100 t~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~-~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~ 178 (531)
T TIGR02902 100 TAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSV-HDPIYQGAGPLGIAGIPQPKPGAVTRAHGGV 178 (531)
T ss_pred HHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCc-ccchhccccccccCCcccccCchhhccCCcE
Confidence 999999987531 1122 33221 01111 11110 000 0122234577888999999
Q ss_pred EEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCe---------------eEeeCCCeEEEEeeCCCCCCCCCccChhhhcC
Q 040742 357 CCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGL---------------VASLSARTSVLAAANPVGGHYNRAKTVNENLK 420 (581)
Q Consensus 357 l~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~---------------~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~ 420 (581)
+||||+++|++..| .|+.+||++.+.+..+.. ...++.++.+|+||+.... .
T Consensus 179 L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~------------~ 246 (531)
T TIGR02902 179 LFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE------------E 246 (531)
T ss_pred EEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc------------c
Confidence 99999999999988 999999998877642110 1245778888877765321 1
Q ss_pred CChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCC
Q 040742 421 MSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGD 500 (581)
Q Consensus 421 l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (581)
+++++++|+.. +.++++. .+....++++.++
T Consensus 247 L~paLrsR~~~-I~f~pL~-~eei~~Il~~~a~----------------------------------------------- 277 (531)
T TIGR02902 247 IPPALRSRCVE-IFFRPLL-DEEIKEIAKNAAE----------------------------------------------- 277 (531)
T ss_pred CChHHhhhhhe-eeCCCCC-HHHHHHHHHHHHH-----------------------------------------------
Confidence 88999999954 4444443 3333333222221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 501 FHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 501 ~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
. ....+++++.+.|..|.. +.|++..+++.|...|..+.+..|+.+|+
T Consensus 278 -----------------k-~~i~is~~al~~I~~y~~--------------n~Rel~nll~~Aa~~A~~~~~~~It~~dI 325 (531)
T TIGR02902 278 -----------------K-IGINLEKHALELIVKYAS--------------NGREAVNIVQLAAGIALGEGRKRILAEDI 325 (531)
T ss_pred -----------------H-cCCCcCHHHHHHHHHhhh--------------hHHHHHHHHHHHHHHHhhCCCcEEcHHHH
Confidence 1 234688888888776432 47899999999988888888888998886
No 30
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.69 E-value=5.4e-16 Score=149.14 Aligned_cols=154 Identities=24% Similarity=0.333 Sum_probs=109.0
Q ss_pred ccccccHHHHHHHHHHHhcCcccc-cCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 254 PSIYGHELVKAGITLALFGGVRKH-SMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~-~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
.+.+||+.+|..+.+.+-+..... .. =|+||+||||.|||+||..+|+.++..+. ++|......+..+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~l----------DHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDla 95 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEAL----------DHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLA 95 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCc----------CeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHH
Confidence 457999999999988877653221 11 19999999999999999999999988776 4444332222111
Q ss_pred EEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCC----ee--EeeCCCeEEEEeeCC
Q 040742 332 AVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAG----LV--ASLSARTSVLAAANP 404 (581)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g----~~--~~~~~~~~viaa~Np 404 (581)
+. ...+..+.|+|||||+++++... .|+.+||+-.+.+.-+. .. ..+| .|++|+|+-.
T Consensus 96 ai--------------Lt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp-pFTLIGATTr 160 (332)
T COG2255 96 AI--------------LTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP-PFTLIGATTR 160 (332)
T ss_pred HH--------------HhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC-CeeEeeeccc
Confidence 11 01233578999999999999887 89999999888775221 22 3334 4888888876
Q ss_pred CCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHH
Q 040742 405 VGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDK 445 (581)
Q Consensus 405 ~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~ 445 (581)
. |. ++.+|.+||.++.-+--+..++...
T Consensus 161 ~-G~------------lt~PLrdRFGi~~rlefY~~~eL~~ 188 (332)
T COG2255 161 A-GM------------LTNPLRDRFGIIQRLEFYTVEELEE 188 (332)
T ss_pred c-cc------------ccchhHHhcCCeeeeecCCHHHHHH
Confidence 4 33 8899999999988765555444443
No 31
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.68 E-value=8.7e-17 Score=145.19 Aligned_cols=127 Identities=28% Similarity=0.473 Sum_probs=93.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecC-CCccCCceeEEEecCccccceeccceeeec--CceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGN-ATTKAGLTVAVVKDSVTNDYAFEAGAMVLA--DSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a--~~gil~iDEi~~~~ 366 (581)
||||+||||||||+|++++++.++..+. +... ..+..++.+..... .+...+.+|.+..+ ++++++|||+++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence 6999999999999999999999987775 4443 34555666655443 46667778888765 68999999999999
Q ss_pred HHHH-HHHHHHHccEEEEeeCCeeEeeCC------CeEEEEeeCCCC-CCCCCccChhhhcCCChhhhccc
Q 040742 367 AEHQ-ALLEAMEQQCVSVAKAGLVASLSA------RTSVLAAANPVG-GHYNRAKTVNENLKMSAALLSRF 429 (581)
Q Consensus 367 ~~~~-~L~~~me~~~i~i~k~g~~~~~~~------~~~viaa~Np~~-g~~~~~~~~~~~~~l~~all~RF 429 (581)
++.. .|+.+++++.+.+...+.....+. .+.+|||+||.. +... ++++|+|||
T Consensus 79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~----------l~~al~~Rf 139 (139)
T PF07728_consen 79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKE----------LSPALLDRF 139 (139)
T ss_dssp HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTT----------TCHHHHTT-
T ss_pred HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCc----------CCHHHHhhC
Confidence 8888 899999999988765555454444 499999999974 4443 999999998
No 32
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.65 E-value=4.1e-15 Score=163.62 Aligned_cols=160 Identities=26% Similarity=0.290 Sum_probs=116.4
Q ss_pred eccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeC-----C---eeEeeCCCeEEEEeeCCCCCCCCCccC
Q 040742 344 FEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKA-----G---LVASLSARTSVLAAANPVGGHYNRAKT 414 (581)
Q Consensus 344 ~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~-----g---~~~~~~~~~~viaa~Np~~g~~~~~~~ 414 (581)
+++|.+..|++|++||||++.+++..| .|+++|+++.+.+... + ...+.+.++.+|+++|+.. .+
T Consensus 217 i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l-l~----- 290 (637)
T PRK13765 217 VEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA-LE----- 290 (637)
T ss_pred CCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH-HH-----
Confidence 489999999999999999999999888 9999999999877421 0 1345678899999999841 11
Q ss_pred hhhhcCCChhhhcccc---EeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhh
Q 040742 415 VNENLKMSAALLSRFD---LVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKL 491 (581)
Q Consensus 415 ~~~~~~l~~all~RFd---li~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (581)
.++++|.+||. +...+.+..
T Consensus 291 -----~~dpdL~~rfk~~~v~v~f~~~~---------------------------------------------------- 313 (637)
T PRK13765 291 -----NMHPALRSRIKGYGYEVYMRDTM---------------------------------------------------- 313 (637)
T ss_pred -----hhhHHHHHHhccCeEEEEccccc----------------------------------------------------
Confidence 16789999985 222221111
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHhc-----CCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHH
Q 040742 492 RLDPKKDGDFHPLPAPLLRKYIAYARTF-----VFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEAR 566 (581)
Q Consensus 492 ~~~~~~~~~~~~i~~~~lk~yi~~ar~~-----i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~ 566 (581)
.-+.+..++|+++..+. -.|.++++|...|.++|...-... ....+..|++..|+|.|...
T Consensus 314 -----------~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r---~~lsl~~~~l~~l~r~a~~~ 379 (637)
T PRK13765 314 -----------EDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRK---GHLTLKLRDLGGLVRVAGDI 379 (637)
T ss_pred -----------CCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCc---cccccCHHHHHHHHHHHHHH
Confidence 11233455666544322 246799999999999988543211 23456689999999999999
Q ss_pred HhccCCCCCCcccc
Q 040742 567 ARLDLREEITAEDA 580 (581)
Q Consensus 567 A~l~~~~~V~~~Dv 580 (581)
|+...++.|+.+||
T Consensus 380 a~~~~~~~i~~~~v 393 (637)
T PRK13765 380 ARSEGAELTTAEHV 393 (637)
T ss_pred HHhhccceecHHHH
Confidence 99999999998886
No 33
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.65 E-value=1.5e-15 Score=158.73 Aligned_cols=222 Identities=19% Similarity=0.227 Sum_probs=145.8
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcE---E-EecCCCccCC
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGI---Y-VCGNATTKAG 328 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~---~-~~~~~~~~~~ 328 (581)
+++|+|.......++...-.. -+.+.+||+.|++||||..+|+++++.++|.- . ++.... +..
T Consensus 244 f~~Iig~S~~m~~~~~~akr~------------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi-Pe~ 310 (560)
T COG3829 244 FDDIIGESPAMLRVLELAKRI------------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI-PET 310 (560)
T ss_pred hhhhccCCHHHHHHHHHHHhh------------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC-CHH
Confidence 467888765444433322211 11235899999999999999999999998732 2 222211 122
Q ss_pred ceeEEEe----cCccccce-eccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEee
Q 040742 329 LTVAVVK----DSVTNDYA-FEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAA 402 (581)
Q Consensus 329 l~~~~~~----~~~~~~~~-~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~ 402 (581)
|..+..+ .+++|... -.+|.+.+|++|.+|+|||+.|+...| .|+.+++++.+..- |.+...+.++.|||||
T Consensus 311 LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rv--G~t~~~~vDVRIIAAT 388 (560)
T COG3829 311 LLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERV--GGTKPIPVDVRIIAAT 388 (560)
T ss_pred HHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEec--CCCCceeeEEEEEecc
Confidence 2222222 22233322 378999999999999999999999999 99999999998776 8888889999999999
Q ss_pred CCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCC-CHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCcccccc
Q 040742 403 NPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKP-DELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLS 481 (581)
Q Consensus 403 Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~-~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (581)
|..-. ...+.-.+.+.|+-|..++-+..++. +..+|..
T Consensus 389 N~nL~------~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~----------------------------------- 427 (560)
T COG3829 389 NRNLE------KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIP----------------------------------- 427 (560)
T ss_pred CcCHH------HHHhcCcchhhheeeeceeeecCCCcccCcchHH-----------------------------------
Confidence 97510 11222237789999988766544422 2222221
Q ss_pred ccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHH
Q 040742 482 VKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVR 561 (581)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslir 561 (581)
++-..+|.+|-.--.+. .+.|++++...+.+| .||-++|+|+.+|.
T Consensus 428 ---------------------~L~~~Fl~k~s~~~~~~-v~~ls~~a~~~L~~y------------~WPGNVRELeNviE 473 (560)
T COG3829 428 ---------------------LLAEYFLDKFSRRYGRN-VKGLSPDALALLLRY------------DWPGNVRELENVIE 473 (560)
T ss_pred ---------------------HHHHHHHHHHHHHcCCC-cccCCHHHHHHHHhC------------CCCchHHHHHHHHH
Confidence 12233344443222221 345899999998875 56899999999998
Q ss_pred HHH
Q 040742 562 LAE 564 (581)
Q Consensus 562 la~ 564 (581)
-+-
T Consensus 474 R~v 476 (560)
T COG3829 474 RAV 476 (560)
T ss_pred HHH
Confidence 655
No 34
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.65 E-value=1.7e-15 Score=159.39 Aligned_cols=158 Identities=20% Similarity=0.216 Sum_probs=95.8
Q ss_pred HHHhhCccccccHHHHHHHHHHHhcCcccccCCCC--CccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCC
Q 040742 248 IVQSICPSIYGHELVKAGITLALFGGVRKHSMYQN--KVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNAT 324 (581)
Q Consensus 248 l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~--~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~ 324 (581)
+.+.+...|+||+.+|+++..++.....+...... .-......|+||+||||||||++|+++|+.+...+. +.+...
T Consensus 65 i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l 144 (412)
T PRK05342 65 IKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTL 144 (412)
T ss_pred HHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 44555566999999999998877532111100000 000112348999999999999999999998876554 333332
Q ss_pred ccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH--------------HH-HHHHHHHccEEEEeeCCee
Q 040742 325 TKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE--------------HQ-ALLEAMEQQCVSVAKAGLV 389 (581)
Q Consensus 325 ~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~--------------~~-~L~~~me~~~i~i~k~g~~ 389 (581)
+..++.+..........+....+.+..+.+||+||||++++... .| +|+++||...+.++..|..
T Consensus 145 ~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~ 224 (412)
T PRK05342 145 TEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGR 224 (412)
T ss_pred ccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCc
Confidence 22232221110000000111123344567899999999999743 56 9999999777777533332
Q ss_pred EeeCCCeEEEEeeCCC
Q 040742 390 ASLSARTSVLAAANPV 405 (581)
Q Consensus 390 ~~~~~~~~viaa~Np~ 405 (581)
......+.+|+|+|..
T Consensus 225 ~~~~~~~~~i~t~nil 240 (412)
T PRK05342 225 KHPQQEFIQVDTTNIL 240 (412)
T ss_pred CcCCCCeEEeccCCce
Confidence 2223678899999984
No 35
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.61 E-value=4.7e-15 Score=152.87 Aligned_cols=221 Identities=22% Similarity=0.265 Sum_probs=151.8
Q ss_pred cccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCc----EEEecCCC----cc
Q 040742 255 SIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRG----IYVCGNAT----TK 326 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~----~~~~~~~~----~~ 326 (581)
.|+|+..+...++..+--- -.++.+|||.|++||||..+|++|++.+++. ++++.... -.
T Consensus 224 ~iIG~S~am~~ll~~i~~V------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlE 291 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVV------------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLE 291 (550)
T ss_pred cceecCHHHHHHHHHHHHH------------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHH
Confidence 6888877777766543211 1223589999999999999999999999873 23332221 11
Q ss_pred CCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC
Q 040742 327 AGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV 405 (581)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~ 405 (581)
..|. ...+..++|.+.-+.|.+.+||||.+|+|||..|+...| .|+.++.+|.+..- |...+.+.++.||||||..
T Consensus 292 SELF-GHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRv--G~~r~ikVDVRiIAATNRD 368 (550)
T COG3604 292 SELF-GHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERV--GGDRTIKVDVRVIAATNRD 368 (550)
T ss_pred HHHh-cccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeec--CCCceeEEEEEEEeccchh
Confidence 1222 234556678888899999999999999999999999999 99999999999877 7788888899999999985
Q ss_pred CCCCCCccChhhhcCCChhhhccccEeEEcCC-CCCHHHHH-HHHHHHHhhccCCCCCcccccCcccccCCCcccccccc
Q 040742 406 GGHYNRAKTVNENLKMSAALLSRFDLVFILLD-KPDELLDK-RVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVK 483 (581)
Q Consensus 406 ~g~~~~~~~~~~~~~l~~all~RFdli~~~~d-~~~~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (581)
- .....+-++.+.|+-|.+++=+..+ .-+...|. .+|.|.
T Consensus 369 L------~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~F-------------------------------- 410 (550)
T COG3604 369 L------EEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYF-------------------------------- 410 (550)
T ss_pred H------HHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHH--------------------------------
Confidence 1 0112222367888888865333222 22222222 122222
Q ss_pred ccchhhhhccCCCCCCCCCCCCHHHHHHHHH-HHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHH
Q 040742 484 SGSLVSKLRLDPKKDGDFHPLPAPLLRKYIA-YARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRL 562 (581)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~-~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirl 562 (581)
++++-. +-+. .-.|+.+|.+.|.+| .+|-++|.||.+|+-
T Consensus 411 -------------------------le~~~~~~gr~--~l~ls~~Al~~L~~y------------~wPGNVRELen~veR 451 (550)
T COG3604 411 -------------------------LEKFRRRLGRA--ILSLSAEALELLSSY------------EWPGNVRELENVVER 451 (550)
T ss_pred -------------------------HHHHHHhcCCc--ccccCHHHHHHHHcC------------CCCCcHHHHHHHHHH
Confidence 222221 1111 125899999999985 468899999999998
Q ss_pred HHHHH
Q 040742 563 AEARA 567 (581)
Q Consensus 563 a~a~A 567 (581)
|-..|
T Consensus 452 avlla 456 (550)
T COG3604 452 AVLLA 456 (550)
T ss_pred HHHHh
Confidence 87766
No 36
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.61 E-value=1.2e-14 Score=152.19 Aligned_cols=157 Identities=22% Similarity=0.273 Sum_probs=95.4
Q ss_pred HHHHHhhCccccccHHHHHHHHHHHhcCcccc-----cCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-E
Q 040742 246 RQIVQSICPSIYGHELVKAGITLALFGGVRKH-----SMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-V 319 (581)
Q Consensus 246 ~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~-----~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~ 319 (581)
..|.+.+...|+||+.+|+.+..++......- ....... ..+..|+||+||||||||++|+++|+.+...+. +
T Consensus 69 ~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~-~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 69 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGV-ELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred HHHHHHhcceecCHHHHHHHHHHHHHHHHhhhcccccccccccc-ccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 44667777889999999999998874321110 0000000 112349999999999999999999998865554 3
Q ss_pred ecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCH--------------HHH-HHHHHHHccEEE-E
Q 040742 320 CGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSA--------------EHQ-ALLEAMEQQCVS-V 383 (581)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~--------------~~~-~L~~~me~~~i~-i 383 (581)
.....+..++.+..............++.+..+.+||+||||++++.+ ..| .|+++|| |++. +
T Consensus 148 da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v 226 (413)
T TIGR00382 148 DATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-GTVANV 226 (413)
T ss_pred chhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhh-ccceec
Confidence 322222223222110000001111123445566789999999999986 467 8999996 5543 3
Q ss_pred e-eCCeeEeeCCCeEEEEeeCCC
Q 040742 384 A-KAGLVASLSARTSVLAAANPV 405 (581)
Q Consensus 384 ~-k~g~~~~~~~~~~viaa~Np~ 405 (581)
. ..|..... ..+.+|.|+|..
T Consensus 227 ~~~~gr~~~~-~~~i~i~TsNil 248 (413)
T TIGR00382 227 PPQGGRKHPY-QEFIQIDTSNIL 248 (413)
T ss_pred ccCCCccccC-CCeEEEEcCCce
Confidence 2 23333333 568899999983
No 37
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-14 Score=152.26 Aligned_cols=236 Identities=22% Similarity=0.238 Sum_probs=158.2
Q ss_pred hhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCc---EE-EecCCCcc
Q 040742 251 SICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRG---IY-VCGNATTK 326 (581)
Q Consensus 251 s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~---~~-~~~~~~~~ 326 (581)
.....++|+..+...+...+..-- ..+.+||+.|++||||-.+|++|++.+++. +. ++.... +
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA------------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAi-p 204 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVA------------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAI-P 204 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccC-C
Confidence 356788998877777665544221 123589999999999999999999999862 22 222211 1
Q ss_pred CCceeE----EEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEe
Q 040742 327 AGLTVA----VVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAA 401 (581)
Q Consensus 327 ~~l~~~----~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa 401 (581)
..+..+ ..+..++|...-+.|.+..|+||++|||||..|+-+.| .|+.+++++.+..- |...+.+.++.||||
T Consensus 205 ~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rv--G~~~~i~vdvRiIaa 282 (464)
T COG2204 205 ENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERV--GGNKPIKVDVRIIAA 282 (464)
T ss_pred HHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEec--CCCcccceeeEEEee
Confidence 222222 22333456666778999999999999999999999999 99999999999877 777788889999999
Q ss_pred eCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCC-CHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccc
Q 040742 402 ANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKP-DELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDL 480 (581)
Q Consensus 402 ~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~-~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (581)
||..-. ...++-.+-+.|+-|+.++-+-.+.. +..+|.
T Consensus 283 T~~dL~------~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDI----------------------------------- 321 (464)
T COG2204 283 TNRDLE------EEVAAGRFREDLYYRLNVVPLRLPPLRERKEDI----------------------------------- 321 (464)
T ss_pred cCcCHH------HHHHcCCcHHHHHhhhccceecCCcccccchhH-----------------------------------
Confidence 997510 11112237789999997655533322 111111
Q ss_pred cccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 040742 481 SVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLV 560 (581)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~lesli 560 (581)
+.+-..+++++..-... -.+.++++|.+.+..| .||-++|+|+.++
T Consensus 322 ---------------------p~L~~hfl~~~~~~~~~-~~~~~s~~a~~~L~~y------------~WPGNVREL~N~v 367 (464)
T COG2204 322 ---------------------PLLAEHFLKRFAAELGR-PPKGFSPEALAALLAY------------DWPGNVRELENVV 367 (464)
T ss_pred ---------------------HHHHHHHHHHHHHHcCC-CCCCCCHHHHHHHHhC------------CCChHHHHHHHHH
Confidence 11222334444422221 1456999999999875 5689999999999
Q ss_pred HHHHHHHhccCCCCCCccc
Q 040742 561 RLAEARARLDLREEITAED 579 (581)
Q Consensus 561 rla~a~A~l~~~~~V~~~D 579 (581)
+.+...+. .+.++.+|
T Consensus 368 er~~il~~---~~~i~~~~ 383 (464)
T COG2204 368 ERAVILSE---GPEIEVED 383 (464)
T ss_pred HHHHhcCC---ccccchhh
Confidence 87665443 44454444
No 38
>PHA02244 ATPase-like protein
Probab=99.59 E-value=4.4e-14 Score=143.75 Aligned_cols=140 Identities=22% Similarity=0.281 Sum_probs=97.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeee--cCceEEEEcCCCCCCH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVL--ADSGLCCIDEFDKMSA 367 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~--a~~gil~iDEi~~~~~ 367 (581)
.++||.||||||||+||+++++.++..++..........+.+.. + ..+. +..|++.. +++++|+|||++.+++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i--~-~~g~--~~dgpLl~A~~~GgvLiLDEId~a~p 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFI--D-ANGK--FHETPFYEAFKKGGLFFIDEIDASIP 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccc--c-cccc--ccchHHHHHhhcCCEEEEeCcCcCCH
Confidence 38999999999999999999999887766322211112222211 1 1232 34455433 4789999999999999
Q ss_pred HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCC
Q 040742 368 EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPD 440 (581)
Q Consensus 368 ~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~ 440 (581)
+.+ .|+.+++++.+... +.....+.+|++|||+|+...-|+. .+...-.+++|+++|| ++ +-.++|+
T Consensus 195 ~vq~~L~~lLd~r~l~l~--g~~i~~h~~FRlIATsN~~~~G~~~--~y~G~k~L~~AllDRF-v~-I~~dyp~ 262 (383)
T PHA02244 195 EALIIINSAIANKFFDFA--DERVTAHEDFRVISAGNTLGKGADH--IYVARNKIDGATLDRF-AP-IEFDYDE 262 (383)
T ss_pred HHHHHHHHHhccCeEEec--CcEEecCCCEEEEEeeCCCccCccc--ccCCCcccCHHHHhhc-EE-eeCCCCc
Confidence 988 89999999877765 6667778899999999997322321 1111224999999999 43 4467776
No 39
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.9e-14 Score=154.10 Aligned_cols=179 Identities=22% Similarity=0.313 Sum_probs=115.5
Q ss_pred HHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCC-c
Q 040742 248 IVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNAT-T 325 (581)
Q Consensus 248 l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~-~ 325 (581)
...-+..+-||.+.+|..|+..|.-+..... ..| .-+||+||||+|||.|++.||+.+++.++ ++-.+. .
T Consensus 317 a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~-------~kG-pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrD 388 (782)
T COG0466 317 AEKILDKDHYGLEKVKERILEYLAVQKLTKK-------LKG-PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRD 388 (782)
T ss_pred HHHHhcccccCchhHHHHHHHHHHHHHHhcc-------CCC-cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCcccc
Confidence 3445678889999999999987765432211 233 25999999999999999999999999876 442221 1
Q ss_pred cCCceeEEEecCccccc-eeccceeeec------CceEEEEcCCCCCCHH----HH-HHHHHHHc-cEEEEeeCCeeEee
Q 040742 326 KAGLTVAVVKDSVTNDY-AFEAGAMVLA------DSGLCCIDEFDKMSAE----HQ-ALLEAMEQ-QCVSVAKAGLVASL 392 (581)
Q Consensus 326 ~~~l~~~~~~~~~~~~~-~~~~g~l~~a------~~gil~iDEi~~~~~~----~~-~L~~~me~-~~i~i~k~g~~~~~ 392 (581)
.+.+ +.. ...| ...||.+..+ .+-+++|||||+|..+ -. +|+|+|+- |.-++.......++
T Consensus 389 EAEI-----RGH-RRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~y 462 (782)
T COG0466 389 EAEI-----RGH-RRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPY 462 (782)
T ss_pred HHHh-----ccc-cccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCcc
Confidence 1111 110 0111 1235554432 4679999999999865 23 89999973 33333222222222
Q ss_pred C-CCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhh
Q 040742 393 S-ARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSL 454 (581)
Q Consensus 393 ~-~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~ 454 (581)
. ..+.||||+|.... +|.||+||+.+|. +..|...|....-.+|++..
T Consensus 463 DLS~VmFiaTANsl~t-------------IP~PLlDRMEiI~-lsgYt~~EKl~IAk~~LiPk 511 (782)
T COG0466 463 DLSKVMFIATANSLDT-------------IPAPLLDRMEVIR-LSGYTEDEKLEIAKRHLIPK 511 (782)
T ss_pred chhheEEEeecCcccc-------------CChHHhcceeeee-ecCCChHHHHHHHHHhcchH
Confidence 1 35889999998531 9999999996654 46777776665544566553
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.56 E-value=3.5e-14 Score=143.34 Aligned_cols=175 Identities=19% Similarity=0.192 Sum_probs=102.9
Q ss_pred HHHHHHHhhCccccccHHHHHHHHHHH----hcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC----
Q 040742 244 IFRQIVQSICPSIYGHELVKAGITLAL----FGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR---- 315 (581)
Q Consensus 244 ~~~~l~~s~~p~I~G~e~vk~~lll~l----~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~---- 315 (581)
....+.+.+.++++|++.+|+.+.... ....... .+.. ..+...|+||+||||||||++|+++++.+..
T Consensus 13 ~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~--~g~~-~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~ 89 (287)
T CHL00181 13 QIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKN--LGLT-SSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYI 89 (287)
T ss_pred CHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH--cCCC-CCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence 456688888899999999999774321 1110000 0001 1122368999999999999999999987532
Q ss_pred ---cE-EEecCCCccCCceeEEEecCccccce-eccceeeecCceEEEEcCCCCC---------CHHHH-HHHHHHHccE
Q 040742 316 ---GI-YVCGNATTKAGLTVAVVKDSVTNDYA-FEAGAMVLADSGLCCIDEFDKM---------SAEHQ-ALLEAMEQQC 380 (581)
Q Consensus 316 ---~~-~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~l~~a~~gil~iDEi~~~---------~~~~~-~L~~~me~~~ 380 (581)
.+ +++.. ++.+... |... ...+.+..+.+||+||||++.+ ..+.+ .|+..|+++.
T Consensus 90 ~~~~~~~v~~~-----~l~~~~~-----g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~ 159 (287)
T CHL00181 90 KKGHLLTVTRD-----DLVGQYI-----GHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR 159 (287)
T ss_pred CCCceEEecHH-----HHHHHHh-----ccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC
Confidence 11 12211 1111000 1000 0112334467899999999986 23345 7888888632
Q ss_pred EEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 381 VSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 381 i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
.++.||+|+++.. +..-..++++|.+||+.++.++++. .++...|..+++.
T Consensus 160 -------------~~~~vI~ag~~~~--------~~~~~~~np~L~sR~~~~i~F~~~t-~~el~~I~~~~l~ 210 (287)
T CHL00181 160 -------------DDLVVIFAGYKDR--------MDKFYESNPGLSSRIANHVDFPDYT-PEELLQIAKIMLE 210 (287)
T ss_pred -------------CCEEEEEeCCcHH--------HHHHHhcCHHHHHhCCceEEcCCcC-HHHHHHHHHHHHH
Confidence 3467778876531 1111136799999999988877765 4444455444443
No 41
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.55 E-value=8.4e-14 Score=143.43 Aligned_cols=197 Identities=22% Similarity=0.248 Sum_probs=129.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC---cEE-EecCCCccCCceeEE----EecCccccceeccceeeecCceEEEEcC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR---GIY-VCGNATTKAGLTVAV----VKDSVTNDYAFEAGAMVLADSGLCCIDE 361 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~---~~~-~~~~~~~~~~l~~~~----~~~~~~~~~~~~~g~l~~a~~gil~iDE 361 (581)
.+|||.|++||||+.+|++++...++ .+. ++....+. .+.... .....+|.....+|.+..|++|++||||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Lde 101 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDE 101 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHHHhccccccccCcccccCCchhhCCCCEEEeCC
Confidence 38999999999999999999988864 222 33332211 111111 1111223333457888899999999999
Q ss_pred CCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEe-EEcCCCC
Q 040742 362 FDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLV-FILLDKP 439 (581)
Q Consensus 362 i~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli-~~~~d~~ 439 (581)
++.++...| .|+.+++++.+... |.....+.++.+|+|+|..-. .....-.+.+.|+.||..+ +.+|+..
T Consensus 102 i~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~at~~~l~------~~~~~g~fr~dL~~rl~~~~i~lPpLR 173 (329)
T TIGR02974 102 LATASLLVQEKLLRVIEYGEFERV--GGSQTLQVDVRLVCATNADLP------ALAAEGRFRADLLDRLAFDVITLPPLR 173 (329)
T ss_pred hHhCCHHHHHHHHHHHHcCcEEec--CCCceeccceEEEEechhhHH------HHhhcCchHHHHHHHhcchhcCCCchh
Confidence 999999999 99999999887654 555667788999999997510 0111123778999999653 4444443
Q ss_pred CHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHH-HHHh
Q 040742 440 DELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIA-YART 518 (581)
Q Consensus 440 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~-~ar~ 518 (581)
+...|... +++.|+. ++++
T Consensus 174 eR~eDI~~------------------------------------------------------------L~~~fl~~~~~~ 193 (329)
T TIGR02974 174 ERQEDIML------------------------------------------------------------LAEHFAIRMARE 193 (329)
T ss_pred hhhhhHHH------------------------------------------------------------HHHHHHHHHHHH
Confidence 33333211 1223332 2332
Q ss_pred c-CC--CcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHH
Q 040742 519 F-VF--PRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARA 567 (581)
Q Consensus 519 ~-i~--p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A 567 (581)
. .. +.+++++.+.|..| .+|-++|+|+.+++.+...+
T Consensus 194 ~~~~~~~~ls~~a~~~L~~y------------~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 194 LGLPLFPGFTPQAREQLLEY------------HWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hCCCCCCCcCHHHHHHHHhC------------CCCchHHHHHHHHHHHHHhC
Confidence 1 12 57999999999885 56889999999998776655
No 42
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.53 E-value=7.8e-14 Score=143.82 Aligned_cols=228 Identities=20% Similarity=0.203 Sum_probs=148.0
Q ss_pred HHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC---cEE--EecC
Q 040742 248 IVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR---GIY--VCGN 322 (581)
Q Consensus 248 l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~---~~~--~~~~ 322 (581)
+.++....++|...--+.++.++..-. ....|||+.|++||||+.+|+.++....+ ..+ ++..
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~a------------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa 139 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAYA------------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCA 139 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHhhC------------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHH
Confidence 445556677787655555554444311 01149999999999999999999977655 122 3322
Q ss_pred CCccCCce---eEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEE
Q 040742 323 ATTKAGLT---VAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSV 398 (581)
Q Consensus 323 ~~~~~~l~---~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~v 398 (581)
..+...+. .+..+...+|...-++|.+..|++|++|+||+.++++..| .|+.+|++|.+..- |.....+.++.+
T Consensus 140 ~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rv--G~~~~~~~dVRl 217 (403)
T COG1221 140 AYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRV--GGSQPRPVDVRL 217 (403)
T ss_pred HhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEec--CCCCCcCCCcee
Confidence 22222111 1223333456666788999999999999999999999999 99999999999865 567788899999
Q ss_pred EEeeCCCCCCCCCccChhhhcCCC--hhhhc-cccEeEEcCCCCCHHHHH-HHHHHHHhhccCCCCCcccccCcccccCC
Q 040742 399 LAAANPVGGHYNRAKTVNENLKMS--AALLS-RFDLVFILLDKPDELLDK-RVSEHIMSLHSGYQEHSSAAKKPRTAYHN 474 (581)
Q Consensus 399 iaa~Np~~g~~~~~~~~~~~~~l~--~all~-RFdli~~~~d~~~~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~ 474 (581)
++|+|..-+. . +- ..|++ |+.+++-+|+......|. .+++|.
T Consensus 218 i~AT~~~l~~---------~--~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~F----------------------- 263 (403)
T COG1221 218 ICATTEDLEE---------A--VLAGADLTRRLNILTITLPPLRERKEDILLLAEHF----------------------- 263 (403)
T ss_pred eeccccCHHH---------H--HHhhcchhhhhcCceecCCChhhchhhHHHHHHHH-----------------------
Confidence 9999975211 0 11 35666 665655555544332222 122222
Q ss_pred CccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCc--CCHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 040742 475 TEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPR--MTKPAAEILQKFYLKLRDHNTSADSTPIT 552 (581)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~--ls~~a~~~i~~~y~~lR~~~~~~~~~~~t 552 (581)
++.| +++.-.|. .++++...+..| .+|-+
T Consensus 264 ----------------------------------l~~~---~~~l~~~~~~~~~~a~~~L~~y------------~~pGN 294 (403)
T COG1221 264 ----------------------------------LKSE---ARRLGLPLSVDSPEALRALLAY------------DWPGN 294 (403)
T ss_pred ----------------------------------HHHH---HHHcCCCCCCCCHHHHHHHHhC------------CCCCc
Confidence 2232 33322222 345677777764 45789
Q ss_pred HHHHHHHHHHHHHHHhccCC
Q 040742 553 ARQLESLVRLAEARARLDLR 572 (581)
Q Consensus 553 ~R~leslirla~a~A~l~~~ 572 (581)
+|+|+.+|..+.+.|.....
T Consensus 295 irELkN~Ve~~~~~~~~~~~ 314 (403)
T COG1221 295 IRELKNLVERAVAQASGEGQ 314 (403)
T ss_pred HHHHHHHHHHHHHHhccccC
Confidence 99999999999999875554
No 43
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6.2e-14 Score=149.27 Aligned_cols=178 Identities=24% Similarity=0.310 Sum_probs=117.5
Q ss_pred hhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCc
Q 040742 251 SICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGL 329 (581)
Q Consensus 251 s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l 329 (581)
-+..+-||.++||+.++..+.-|.-+.. ..|. -++|+||||+|||.+++.||+.++|.++ ++-.+.+...-
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrgs-------~qGk-IlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAe 479 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRGS-------VQGK-ILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAE 479 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhccc-------CCCc-EEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHh
Confidence 3677889999999999988876644332 3332 5999999999999999999999999887 54333221111
Q ss_pred eeEEEecCccccce-eccceeeec------CceEEEEcCCCCCCHH----HH-HHHHHHHc-cEEEEeeCCeeEeeC-CC
Q 040742 330 TVAVVKDSVTNDYA-FEAGAMVLA------DSGLCCIDEFDKMSAE----HQ-ALLEAMEQ-QCVSVAKAGLVASLS-AR 395 (581)
Q Consensus 330 ~~~~~~~~~~~~~~-~~~g~l~~a------~~gil~iDEi~~~~~~----~~-~L~~~me~-~~i~i~k~g~~~~~~-~~ 395 (581)
. +.. ...|+ ..||.++.+ .+-+++|||+|++... -. +|+|+|+- |.-.+......+++. .+
T Consensus 480 I----kGH-RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 480 I----KGH-RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred h----ccc-ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhh
Confidence 1 110 11111 345665443 5679999999998743 23 89999973 333322112222221 36
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhc
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLH 455 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~ 455 (581)
+.+|||+|... .|+++|+||+.+ +-+..|..+|.-+.--+|++...
T Consensus 555 VLFicTAN~id-------------tIP~pLlDRMEv-IelsGYv~eEKv~IA~~yLip~a 600 (906)
T KOG2004|consen 555 VLFICTANVID-------------TIPPPLLDRMEV-IELSGYVAEEKVKIAERYLIPQA 600 (906)
T ss_pred eEEEEeccccc-------------cCChhhhhhhhe-eeccCccHHHHHHHHHHhhhhHH
Confidence 88999999863 199999999965 55677887777655445555543
No 44
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.52 E-value=1.7e-14 Score=136.69 Aligned_cols=158 Identities=22% Similarity=0.236 Sum_probs=92.6
Q ss_pred hCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCce
Q 040742 252 ICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLT 330 (581)
Q Consensus 252 ~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~ 330 (581)
...+++||+.+|+.+.+.+---.. +.....| -.-|||++||||||||++|+++|..+...++ +.. ..|.
T Consensus 119 t~ddViGqEeAK~kcrli~~yLen--Pe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vka-----t~li 188 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLEN--PERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKA-----TELI 188 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhC--hHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEech-----HHHH
Confidence 456799999999987654321100 0000011 0138999999999999999999998876665 322 1233
Q ss_pred eEEEecCcc--ccceeccceeeecCceEEEEcCCCCCCHHH-------------HHHHHHHHccEEEEeeCCeeEeeCCC
Q 040742 331 VAVVKDSVT--NDYAFEAGAMVLADSGLCCIDEFDKMSAEH-------------QALLEAMEQQCVSVAKAGLVASLSAR 395 (581)
Q Consensus 331 ~~~~~~~~~--~~~~~~~g~l~~a~~gil~iDEi~~~~~~~-------------~~L~~~me~~~i~i~k~g~~~~~~~~ 395 (581)
+..+.+... .+..-.+ ..+...|+||||+|.+.-+. .+|+.-|+ |+. -+..
T Consensus 189 GehVGdgar~Ihely~rA---~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD---------gi~--eneG 254 (368)
T COG1223 189 GEHVGDGARRIHELYERA---RKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD---------GIK--ENEG 254 (368)
T ss_pred HHHhhhHHHHHHHHHHHH---HhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc---------Ccc--cCCc
Confidence 322222110 0000111 12236899999999876431 13444332 332 3455
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHH
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRV 447 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i 447 (581)
+..|||+|.+.- |++|+.|||.- -+-+..|+.++...|
T Consensus 255 VvtIaaTN~p~~-------------LD~aiRsRFEe-EIEF~LP~~eEr~~i 292 (368)
T COG1223 255 VVTIAATNRPEL-------------LDPAIRSRFEE-EIEFKLPNDEERLEI 292 (368)
T ss_pred eEEEeecCChhh-------------cCHHHHhhhhh-eeeeeCCChHHHHHH
Confidence 777888887631 89999999965 333456666665555
No 45
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.52 E-value=1.1e-13 Score=139.65 Aligned_cols=224 Identities=19% Similarity=0.158 Sum_probs=130.0
Q ss_pred HHHHHhhCccccccHHHHHHHHHHHh--cCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC-------c
Q 040742 246 RQIVQSICPSIYGHELVKAGITLALF--GGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR-------G 316 (581)
Q Consensus 246 ~~l~~s~~p~I~G~e~vk~~lll~l~--~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~-------~ 316 (581)
..+.+.+..+++|.+.+|+.+..... .........+.. ......|+||+||||||||++|+++++.+.. .
T Consensus 14 ~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~-~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~ 92 (284)
T TIGR02880 14 TEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLA-SAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGH 92 (284)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCC-cCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccce
Confidence 34555555678999999998743211 100000000000 0112358999999999999999988877632 1
Q ss_pred E-EEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC---------HHHH-HHHHHHHccEEEEee
Q 040742 317 I-YVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS---------AEHQ-ALLEAMEQQCVSVAK 385 (581)
Q Consensus 317 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~---------~~~~-~L~~~me~~~i~i~k 385 (581)
+ +++.. ++....... +. ....+.+..+.+|++||||++.+. .+.+ .|++.|+++.
T Consensus 93 ~v~v~~~-----~l~~~~~g~--~~--~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~----- 158 (284)
T TIGR02880 93 LVSVTRD-----DLVGQYIGH--TA--PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR----- 158 (284)
T ss_pred EEEecHH-----HHhHhhccc--ch--HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-----
Confidence 1 12211 111111000 00 001123445678999999999772 3345 7889998642
Q ss_pred CCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccc
Q 040742 386 AGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAA 465 (581)
Q Consensus 386 ~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~ 465 (581)
.++.+|+|+++.. ...-..++++|.+||+..+.++++. .+....|..+++..
T Consensus 159 --------~~~~vI~a~~~~~--------~~~~~~~np~L~sR~~~~i~fp~l~-~edl~~I~~~~l~~----------- 210 (284)
T TIGR02880 159 --------DDLVVILAGYKDR--------MDSFFESNPGFSSRVAHHVDFPDYS-EAELLVIAGLMLKE----------- 210 (284)
T ss_pred --------CCEEEEEeCCcHH--------HHHHHhhCHHHHhhCCcEEEeCCcC-HHHHHHHHHHHHHH-----------
Confidence 3567888877641 0011136899999999888877765 44444443333331
Q ss_pred cCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCC
Q 040742 466 KKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTS 545 (581)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~ 545 (581)
..+.+++++.+.+..|....+.
T Consensus 211 ------------------------------------------------------~~~~l~~~a~~~L~~~l~~~~~---- 232 (284)
T TIGR02880 211 ------------------------------------------------------QQYRFSAEAEEAFADYIALRRT---- 232 (284)
T ss_pred ------------------------------------------------------hccccCHHHHHHHHHHHHHhCC----
Confidence 1235677777777775544332
Q ss_pred CCCccccHHHHHHHHHHHHHHHhccC
Q 040742 546 ADSTPITARQLESLVRLAEARARLDL 571 (581)
Q Consensus 546 ~~~~~~t~R~leslirla~a~A~l~~ 571 (581)
..++-++|.+..++..+......++
T Consensus 233 -~~~~GN~R~lrn~ve~~~~~~~~r~ 257 (284)
T TIGR02880 233 -QPHFANARSIRNAIDRARLRQANRL 257 (284)
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHH
Confidence 2457789999999888776666544
No 46
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.51 E-value=2e-13 Score=141.36 Aligned_cols=156 Identities=24% Similarity=0.308 Sum_probs=98.4
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeE
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVA 332 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~ 332 (581)
.+++|++.+++.+...+........ ..-|+||+||||||||++|+++++.+...+. ..+......
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~---------~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~----- 90 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGE---------ALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP----- 90 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCC---------CCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh-----
Confidence 5689999999988766653211000 0128999999999999999999999876554 222211110
Q ss_pred EEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeC-C-----eeEeeCCCeEEEEeeCCC
Q 040742 333 VVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKA-G-----LVASLSARTSVLAAANPV 405 (581)
Q Consensus 333 ~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~-g-----~~~~~~~~~~viaa~Np~ 405 (581)
+.. ..-.-.+..++++||||++.++...+ .|+.+|++..+.+.-. + ....++ ++.+|+|+|+.
T Consensus 91 -------~~l--~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~ 160 (328)
T PRK00080 91 -------GDL--AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRA 160 (328)
T ss_pred -------HHH--HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCCc
Confidence 000 00000123578999999999998766 7889999876543211 1 111233 47888888875
Q ss_pred CCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHH
Q 040742 406 GGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRV 447 (581)
Q Consensus 406 ~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i 447 (581)
. .++++|.+||++++.+. .++.+....+
T Consensus 161 ~-------------~l~~~L~sRf~~~~~l~-~~~~~e~~~i 188 (328)
T PRK00080 161 G-------------LLTSPLRDRFGIVQRLE-FYTVEELEKI 188 (328)
T ss_pred c-------------cCCHHHHHhcCeeeecC-CCCHHHHHHH
Confidence 2 17889999998766554 4554444444
No 47
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.50 E-value=8.6e-13 Score=148.52 Aligned_cols=216 Identities=14% Similarity=0.184 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHHHh--------hcCchHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeC
Q 040742 225 FSPRDLEFIVKFSE--------ESGSDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVG 296 (581)
Q Consensus 225 ~~~~~~~~i~~~~~--------~~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G 296 (581)
++.+++..+..-+. ....+.+..|.+.+...|+||+.+++.+..++..... ...+.+ +...++||+|
T Consensus 421 v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~-gl~~~~----kp~~~~Lf~G 495 (758)
T PRK11034 421 VNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRA-GLGHEH----KPVGSFLFAG 495 (758)
T ss_pred cChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhc-cccCCC----CCcceEEEEC
Confidence 56666666643331 1123456678899999999999999998877763211 000101 1112799999
Q ss_pred CCCChHHHHHHHHHHHCCCcEE-EecCCCcc----CCceeEEEecCcccccee-cccee----eecCceEEEEcCCCCCC
Q 040742 297 DPGLGKSQLLQAAAAVSPRGIY-VCGNATTK----AGLTVAVVKDSVTNDYAF-EAGAM----VLADSGLCCIDEFDKMS 366 (581)
Q Consensus 297 ~pGtGKT~la~~la~~~~~~~~-~~~~~~~~----~~l~~~~~~~~~~~~~~~-~~g~l----~~a~~gil~iDEi~~~~ 366 (581)
|||||||.+|+.+|+.+...+. ++...... ..+.+. + .|.... ..|.+ .....+|++|||+++++
T Consensus 496 P~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~----~-~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~ 570 (758)
T PRK11034 496 PTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA----P-PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH 570 (758)
T ss_pred CCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCC----C-CCcccccccchHHHHHHhCCCcEEEeccHhhhh
Confidence 9999999999999999865543 33222111 111110 0 010001 11222 12246899999999999
Q ss_pred HHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCC--------CCC--CCccChhhh--cCCChhhhccccEeE
Q 040742 367 AEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVG--------GHY--NRAKTVNEN--LKMSAALLSRFDLVF 433 (581)
Q Consensus 367 ~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~--------g~~--~~~~~~~~~--~~l~~all~RFdli~ 433 (581)
++.+ .|+++|++|.++.. .|....+ .++.+|+|+|... |.. +....+.+. -.+.+.|++|+|.++
T Consensus 571 ~~v~~~LLq~ld~G~ltd~-~g~~vd~-rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii 648 (758)
T PRK11034 571 PDVFNLLLQVMDNGTLTDN-NGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNII 648 (758)
T ss_pred HHHHHHHHHHHhcCeeecC-CCceecC-CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEE
Confidence 9988 99999999998854 3443332 3578999999531 100 000001111 248999999999877
Q ss_pred EcCCCCCHHHHHHHHHHHHh
Q 040742 434 ILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 434 ~~~d~~~~~~d~~i~~~il~ 453 (581)
.+.+...+ ....|+...+.
T Consensus 649 ~f~~L~~~-~l~~I~~~~l~ 667 (758)
T PRK11034 649 WFDHLSTD-VIHQVVDKFIV 667 (758)
T ss_pred EcCCCCHH-HHHHHHHHHHH
Confidence 76555444 44555544443
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.50 E-value=1.3e-13 Score=139.01 Aligned_cols=149 Identities=24% Similarity=0.304 Sum_probs=98.3
Q ss_pred ccccccHHHH--HHHH-HHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCc
Q 040742 254 PSIYGHELVK--AGIT-LALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGL 329 (581)
Q Consensus 254 p~I~G~e~vk--~~ll-l~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l 329 (581)
.+++||+++. .+++ .++-+|+- .+++|+||||||||+||+.|+......+. ++....+..++
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l--------------~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdl 89 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHL--------------HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDL 89 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCC--------------ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHH
Confidence 4588998865 2333 33444421 28999999999999999999999887776 44433322221
Q ss_pred eeEEEecCccccceeccceeee-cCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCC
Q 040742 330 TVAVVKDSVTNDYAFEAGAMVL-ADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGG 407 (581)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~l~~-a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g 407 (581)
-.. .-++..... -.+-|+||||++++....| .|+..||+|.+.+..+ .|-||.
T Consensus 90 r~i----------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGA-------------TTENPs-- 144 (436)
T COG2256 90 REI----------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGA-------------TTENPS-- 144 (436)
T ss_pred HHH----------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEec-------------cCCCCC--
Confidence 100 000101111 1245899999999999888 9999999998876411 233664
Q ss_pred CCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 408 HYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 408 ~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
|. +.+||+||. .+|.+.+..+++..+.+.+.+..
T Consensus 145 -F~----------ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 145 -FE----------LNPALLSRA-RVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred -ee----------ecHHHhhhh-heeeeecCCHHHHHHHHHHHHhh
Confidence 22 889999999 77888877777666665443443
No 49
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.49 E-value=7e-13 Score=136.74 Aligned_cols=197 Identities=23% Similarity=0.269 Sum_probs=128.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC---cEE-EecCCCccCCceeEEE----ecCccccceeccceeeecCceEEEEcC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR---GIY-VCGNATTKAGLTVAVV----KDSVTNDYAFEAGAMVLADSGLCCIDE 361 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~---~~~-~~~~~~~~~~l~~~~~----~~~~~~~~~~~~g~l~~a~~gil~iDE 361 (581)
.+|||+|++||||+.+|++++...++ .+. ++....+. .+..... .....|......|.+..|++|++||||
T Consensus 30 ~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~ 108 (326)
T PRK11608 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDE 108 (326)
T ss_pred CCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-HHHHHHHccccccccCCcccccCCchhccCCCeEEeCC
Confidence 38999999999999999999988763 222 44333221 1111111 111112222346778889999999999
Q ss_pred CCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccE-eEEcCCCC
Q 040742 362 FDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDL-VFILLDKP 439 (581)
Q Consensus 362 i~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdl-i~~~~d~~ 439 (581)
++.++...| .|+.+++++.+... |.....+.++.+|+|++..-. .+.+.-.+.+.|+.||.. .+.+|+..
T Consensus 109 i~~L~~~~Q~~L~~~l~~~~~~~~--g~~~~~~~~~RiI~~s~~~l~------~l~~~g~f~~dL~~~l~~~~i~lPpLR 180 (326)
T PRK11608 109 LATAPMLVQEKLLRVIEYGELERV--GGSQPLQVNVRLVCATNADLP------AMVAEGKFRADLLDRLAFDVVQLPPLR 180 (326)
T ss_pred hhhCCHHHHHHHHHHHhcCcEEeC--CCCceeeccEEEEEeCchhHH------HHHHcCCchHHHHHhcCCCEEECCChh
Confidence 999999998 99999999886654 445566778999999987510 011112377899999954 44555544
Q ss_pred CHHHHH-HHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHh
Q 040742 440 DELLDK-RVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYART 518 (581)
Q Consensus 440 ~~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~ 518 (581)
+...|. .++.|. ++++ ++.
T Consensus 181 eR~eDI~~L~~~f---------------------------------------------------------l~~~---~~~ 200 (326)
T PRK11608 181 ERQSDIMLMAEHF---------------------------------------------------------AIQM---CRE 200 (326)
T ss_pred hhhhhHHHHHHHH---------------------------------------------------------HHHH---HHH
Confidence 443332 122222 2222 222
Q ss_pred ---cCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHH
Q 040742 519 ---FVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARA 567 (581)
Q Consensus 519 ---~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A 567 (581)
.+.|.+++++.+.|..| .+|-++|+|+.+++.+...+
T Consensus 201 ~~~~~~~~~s~~al~~L~~y------------~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 201 LGLPLFPGFTERARETLLNY------------RWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred hCCCCCCCCCHHHHHHHHhC------------CCCcHHHHHHHHHHHHHHhc
Confidence 12357999999999885 56889999999999877654
No 50
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.48 E-value=1.1e-12 Score=142.47 Aligned_cols=239 Identities=20% Similarity=0.180 Sum_probs=146.2
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC---cEE-EecCCCccCCc
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR---GIY-VCGNATTKAGL 329 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~---~~~-~~~~~~~~~~l 329 (581)
.+++|.....+.+...+..-. ..+.+||+.|++||||+.+|++++..+++ .+. ++..... ..+
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A------------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~-e~l 278 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA------------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA-ESL 278 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC-hhH
Confidence 357888766665554443210 01138999999999999999999988754 222 3332221 111
Q ss_pred eeEEEecCccccce-----eccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeC
Q 040742 330 TVAVVKDSVTNDYA-----FEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAAN 403 (581)
Q Consensus 330 ~~~~~~~~~~~~~~-----~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~N 403 (581)
..+..+....|.|+ ..+|.+..|++|++||||++.|+...| .|+.+++++.+... |.....+.++.+|+|+|
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~--g~~~~~~~dvRiIaat~ 356 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRV--GGTEPVPVDVRVVAATH 356 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEec--CCCceeeecceEEeccC
Confidence 11111111122221 356778889999999999999999999 99999999887654 55566777899999998
Q ss_pred CCCCCCCCccChhhhcCCChhhhccccE-eEEcCCCCCHHHHHH-HHHHHHhhccCCCCCcccccCcccccCCCcccccc
Q 040742 404 PVGGHYNRAKTVNENLKMSAALLSRFDL-VFILLDKPDELLDKR-VSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLS 481 (581)
Q Consensus 404 p~~g~~~~~~~~~~~~~l~~all~RFdl-i~~~~d~~~~~~d~~-i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (581)
..-. ...+.-.+.+.|+.|+.. .+.+|+..+...|.. ++.|.
T Consensus 357 ~~l~------~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~f------------------------------ 400 (526)
T TIGR02329 357 CALT------TAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEY------------------------------ 400 (526)
T ss_pred CCHH------HHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHH------------------------------
Confidence 7511 011112367889999864 444555444333322 22222
Q ss_pred ccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHH
Q 040742 482 VKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVR 561 (581)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslir 561 (581)
++++ ++.. ...+++++.+.+...+..|.. ..+|-++|+|+.+++
T Consensus 401 ---------------------------l~~~---~~~~-~~~~~~~a~~~~~~~~~~L~~-----y~WPGNvrEL~nvie 444 (526)
T TIGR02329 401 ---------------------------LVQA---AAAL-RLPDSEAAAQVLAGVADPLQR-----YPWPGNVRELRNLVE 444 (526)
T ss_pred ---------------------------HHHH---HHHc-CCCCCHHHHHHhHHHHHHHHh-----CCCCchHHHHHHHHH
Confidence 2222 2221 224888888886555555543 357889999999998
Q ss_pred HHHHHHhccCCCCCCccc
Q 040742 562 LAEARARLDLREEITAED 579 (581)
Q Consensus 562 la~a~A~l~~~~~V~~~D 579 (581)
-+...+...-...++.+|
T Consensus 445 r~~i~~~~~~~~~I~~~~ 462 (526)
T TIGR02329 445 RLALELSAMPAGALTPDV 462 (526)
T ss_pred HHHHhcccCCCCccCHHH
Confidence 876654321223455444
No 51
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.47 E-value=5.7e-13 Score=136.76 Aligned_cols=156 Identities=23% Similarity=0.308 Sum_probs=95.5
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEe-cCCCccCCceeE
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVC-GNATTKAGLTVA 332 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~-~~~~~~~~l~~~ 332 (581)
.+++|++.+++.+...+....... ...-|++|+||||||||+||+++++.+...+... +......
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~---------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~----- 69 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQ---------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP----- 69 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc-----
Confidence 468999999998877665321100 0012899999999999999999999887655422 1111000
Q ss_pred EEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEe-eCC-----eeEeeCCCeEEEEeeCCC
Q 040742 333 VVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVA-KAG-----LVASLSARTSVLAAANPV 405 (581)
Q Consensus 333 ~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~-k~g-----~~~~~~~~~~viaa~Np~ 405 (581)
+.+.-. ......+.++||||++.++++.+ .|+.+|++....+. .++ ....++ .+.+++++|..
T Consensus 70 -------~~l~~~--l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~li~~t~~~ 139 (305)
T TIGR00635 70 -------GDLAAI--LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLP-PFTLVGATTRA 139 (305)
T ss_pred -------hhHHHH--HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCC-CeEEEEecCCc
Confidence 000000 00122467999999999998877 88899987654432 111 112233 36777777764
Q ss_pred CCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHH
Q 040742 406 GGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRV 447 (581)
Q Consensus 406 ~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i 447 (581)
. .+++++.+||.+++.+. .++.+....+
T Consensus 140 ~-------------~l~~~l~sR~~~~~~l~-~l~~~e~~~i 167 (305)
T TIGR00635 140 G-------------MLTSPLRDRFGIILRLE-FYTVEELAEI 167 (305)
T ss_pred c-------------ccCHHHHhhcceEEEeC-CCCHHHHHHH
Confidence 2 17889999997755544 4444444443
No 52
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.47 E-value=1.7e-12 Score=140.87 Aligned_cols=226 Identities=18% Similarity=0.179 Sum_probs=140.5
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHH--------CCC---cEE-Eec
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAV--------SPR---GIY-VCG 321 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~--------~~~---~~~-~~~ 321 (581)
.+++|.....+.+...+..-- ..+.+||+.|++||||+.+|++++.. +++ .+. ++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A------------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inC 286 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA------------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNC 286 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeec
Confidence 458888766655554432110 01138999999999999999999987 433 222 333
Q ss_pred CCCccCCceeEEEecCccccce-----eccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCC
Q 040742 322 NATTKAGLTVAVVKDSVTNDYA-----FEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSAR 395 (581)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~-----~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~ 395 (581)
..... .+..+..+....|.|+ -.+|.+..|++|++||||++.|+...| .|+.+++++.+... |.....+.+
T Consensus 287 aal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~--G~~~~~~~d 363 (538)
T PRK15424 287 GAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRV--GGHQPVPVD 363 (538)
T ss_pred ccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEec--CCCceeccc
Confidence 32211 1111111111112221 346788899999999999999999999 99999999988754 666677888
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEc-CCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCC
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFIL-LDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHN 474 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~-~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~ 474 (581)
+.+|+|+|..-. ...+.-.+.+.|+.|+..+.+- |+..+...|..
T Consensus 364 vRiIaat~~~L~------~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~---------------------------- 409 (538)
T PRK15424 364 VRVISATHCDLE------EDVRQGRFRRDLFYRLSILRLQLPPLRERVADIL---------------------------- 409 (538)
T ss_pred eEEEEecCCCHH------HHHhcccchHHHHHHhcCCeecCCChhhchhHHH----------------------------
Confidence 999999997510 0111122667888888654443 33222222211
Q ss_pred CccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHH-HHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccH
Q 040742 475 TEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAY-ARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITA 553 (581)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~-ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~ 553 (581)
.+.+.|+.. ++.. ...+++++...+......|.. ..+|-++
T Consensus 410 --------------------------------~L~~~fl~~~~~~~-~~~~~~~a~~~~~~a~~~L~~-----y~WPGNv 451 (538)
T PRK15424 410 --------------------------------PLAESFLKQSLAAL-SAPFSAALRQGLQQCETLLLH-----YDWPGNV 451 (538)
T ss_pred --------------------------------HHHHHHHHHHHHHc-CCCCCHHHHHhhHHHHHHHHh-----CCCCchH
Confidence 113333321 2222 334788887777666656653 3578899
Q ss_pred HHHHHHHHHHHHH
Q 040742 554 RQLESLVRLAEAR 566 (581)
Q Consensus 554 R~leslirla~a~ 566 (581)
|+|+.+++-+...
T Consensus 452 REL~nvier~~i~ 464 (538)
T PRK15424 452 RELRNLMERLALF 464 (538)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877654
No 53
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.46 E-value=1e-12 Score=131.54 Aligned_cols=217 Identities=20% Similarity=0.192 Sum_probs=120.2
Q ss_pred cccccHHHHHHHHHH--HhcC-cccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC------cEEEecCCCc
Q 040742 255 SIYGHELVKAGITLA--LFGG-VRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR------GIYVCGNATT 325 (581)
Q Consensus 255 ~I~G~e~vk~~lll~--l~~g-~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~------~~~~~~~~~~ 325 (581)
+++|++.+|+.+... +..- ..... .+.. ...+..|+||+||||||||++|+++++.+.. ..++.. .
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~-~g~~-~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~---~ 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKE-EGLK-TSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV---E 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHH-cCCC-CCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe---c
Confidence 478999999887422 1100 00000 0000 1122259999999999999999999987521 111100 0
Q ss_pred cCCceeEEEecCccccce-eccceeeecCceEEEEcCCCCCCH--------HHH-HHHHHHHccEEEEeeCCeeEeeCCC
Q 040742 326 KAGLTVAVVKDSVTNDYA-FEAGAMVLADSGLCCIDEFDKMSA--------EHQ-ALLEAMEQQCVSVAKAGLVASLSAR 395 (581)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~-~~~g~l~~a~~gil~iDEi~~~~~--------~~~-~L~~~me~~~i~i~k~g~~~~~~~~ 395 (581)
..++.+... |... ...+.+..+.+||+||||++.+.. +.+ .|+..|++.. ..
T Consensus 82 ~~~l~~~~~-----g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------------~~ 143 (261)
T TIGR02881 82 RADLVGEYI-----GHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-------------NE 143 (261)
T ss_pred HHHhhhhhc-----cchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-------------CC
Confidence 011111110 0000 011223445689999999998752 233 6777777532 23
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCC
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNT 475 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~ 475 (581)
+.++++.++.... .-..++++|.+||+..+.++++. .++...|.++++.
T Consensus 144 ~~vila~~~~~~~--------~~~~~~p~L~sRf~~~i~f~~~~-~~el~~Il~~~~~---------------------- 192 (261)
T TIGR02881 144 FVLILAGYSDEMD--------YFLSLNPGLRSRFPISIDFPDYT-VEELMEIAERMVK---------------------- 192 (261)
T ss_pred EEEEecCCcchhH--------HHHhcChHHHhccceEEEECCCC-HHHHHHHHHHHHH----------------------
Confidence 5566666653210 01127899999998877665444 4443444222222
Q ss_pred ccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHH
Q 040742 476 EGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQ 555 (581)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~ 555 (581)
. ..-.+++++.+.|..++..++.... ..+-+.|.
T Consensus 193 ------------------------------------------~-~~~~l~~~a~~~l~~~~~~~~~~~~---~~~gn~R~ 226 (261)
T TIGR02881 193 ------------------------------------------E-REYKLTEEAKWKLREHLYKVDQLSS---REFSNARY 226 (261)
T ss_pred ------------------------------------------H-cCCccCHHHHHHHHHHHHHHHhccC---CCCchHHH
Confidence 1 1225788888888877766653221 23457899
Q ss_pred HHHHHHHHHHHHhccC
Q 040742 556 LESLVRLAEARARLDL 571 (581)
Q Consensus 556 leslirla~a~A~l~~ 571 (581)
+..++..|..+...++
T Consensus 227 ~~n~~e~a~~~~~~r~ 242 (261)
T TIGR02881 227 VRNIIEKAIRRQAVRL 242 (261)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998888877766543
No 54
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.4e-13 Score=139.31 Aligned_cols=166 Identities=23% Similarity=0.306 Sum_probs=98.4
Q ss_pred CccccccHHHHHHHHHHH---hcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCcc--
Q 040742 253 CPSIYGHELVKAGITLAL---FGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTK-- 326 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l---~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~-- 326 (581)
+.++.|-+++|..+...+ -... +-..-+++.+ -.|||+||||||||.|||++|..++-.+| .+|.....
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~-kftrLGGKLP----KGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPT-KFTRLGGKLP----KGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcH-HhhhccCcCC----CceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 567888999998775432 1111 0000011111 15999999999999999999999988776 45544321
Q ss_pred CCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH---------HHHHHHHHHccEEEEeeCCeeEeeCCCeE
Q 040742 327 AGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE---------HQALLEAMEQQCVSVAKAGLVASLSARTS 397 (581)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~---------~~~L~~~me~~~i~i~k~g~~~~~~~~~~ 397 (581)
.|.-+.-+++ +-..+-.. ...|+||||||..... .|.|.+.|-+ +. | ..-+..+.
T Consensus 378 VGvGArRVRd-------LF~aAk~~-APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvE----mD--G--F~qNeGiI 441 (752)
T KOG0734|consen 378 VGVGARRVRD-------LFAAAKAR-APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVE----MD--G--FKQNEGII 441 (752)
T ss_pred hcccHHHHHH-------HHHHHHhc-CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHH----hc--C--cCcCCceE
Confidence 1111111111 11111111 2689999999987533 1234443322 11 2 23356789
Q ss_pred EEEeeCCCCCCCCCccChhhhcCCChhhh--ccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 398 VLAAANPVGGHYNRAKTVNENLKMSAALL--SRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 398 viaa~Np~~g~~~~~~~~~~~~~l~~all--~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
||||+|.++. |++||+ -|||..+. .+.||-.-...|.++.++
T Consensus 442 vigATNfpe~-------------LD~AL~RPGRFD~~v~-Vp~PDv~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 442 VIGATNFPEA-------------LDKALTRPGRFDRHVT-VPLPDVRGRTEILKLYLS 485 (752)
T ss_pred EEeccCChhh-------------hhHHhcCCCccceeEe-cCCCCcccHHHHHHHHHh
Confidence 9999998642 889998 59998655 678887777777444443
No 55
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.44 E-value=1.4e-12 Score=147.93 Aligned_cols=175 Identities=25% Similarity=0.323 Sum_probs=105.4
Q ss_pred HHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCC-
Q 040742 247 QIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNAT- 324 (581)
Q Consensus 247 ~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~- 324 (581)
...+-+..++||++.+|+.++..+........ .+|. .++|+||||+|||++++.+++.+++.+. ++..+.
T Consensus 315 ~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~-------~~g~-~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~ 386 (784)
T PRK10787 315 QAQEILDTDHYGLERVKDRILEYLAVQSRVNK-------IKGP-ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVR 386 (784)
T ss_pred HHHHHhhhhccCHHHHHHHHHHHHHHHHhccc-------CCCc-eEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 34455777899999999999855543211100 2232 6999999999999999999999887665 332111
Q ss_pred ccCCceeEEEecCccccceeccceee------ecCceEEEEcCCCCCCHHH----H-HHHHHHHc-cEEEEeeCCeeEee
Q 040742 325 TKAGLTVAVVKDSVTNDYAFEAGAMV------LADSGLCCIDEFDKMSAEH----Q-ALLEAMEQ-QCVSVAKAGLVASL 392 (581)
Q Consensus 325 ~~~~l~~~~~~~~~~~~~~~~~g~l~------~a~~gil~iDEi~~~~~~~----~-~L~~~me~-~~i~i~k~g~~~~~ 392 (581)
....+.+.. +. ..| -.+|.+. -..+.+++|||+|++.++. . +|+++|+. +.............
T Consensus 387 d~~~i~g~~-~~-~~g---~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~ 461 (784)
T PRK10787 387 DEAEIRGHR-RT-YIG---SMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY 461 (784)
T ss_pred CHHHhccch-hc-cCC---CCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccc
Confidence 111111110 00 001 1123221 1235699999999998653 4 89999985 33333311121111
Q ss_pred -CCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHH
Q 040742 393 -SARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEH 450 (581)
Q Consensus 393 -~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~ 450 (581)
-.++.+|||+|... +++||++||++ +.+..++.+ +-..|++.
T Consensus 462 dls~v~~i~TaN~~~--------------i~~aLl~R~~i-i~~~~~t~e-ek~~Ia~~ 504 (784)
T PRK10787 462 DLSDVMFVATSNSMN--------------IPAPLLDRMEV-IRLSGYTED-EKLNIAKR 504 (784)
T ss_pred cCCceEEEEcCCCCC--------------CCHHHhcceee-eecCCCCHH-HHHHHHHH
Confidence 14678999999742 99999999964 555566544 44445443
No 56
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.44 E-value=2.4e-12 Score=140.89 Aligned_cols=223 Identities=22% Similarity=0.266 Sum_probs=144.5
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC---cE-EEecCCCccC--
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR---GI-YVCGNATTKA-- 327 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~---~~-~~~~~~~~~~-- 327 (581)
..++|+....+.+...+..-- ..+.+|||+|++||||+.+|++++..+++ .+ .++.......
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a------------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVA------------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CceeecCHHHHHHHHHHHHHh------------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 458888877766665554321 11238999999999999999999998764 22 2443332211
Q ss_pred --CceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCC
Q 040742 328 --GLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANP 404 (581)
Q Consensus 328 --~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np 404 (581)
.+.+. .+...+|...-..|.+..|++|++||||++.++.+.| .|+.+++++.+... |.....+.++.+|+|+|.
T Consensus 255 e~~lfG~-~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 255 ESELFGH-VKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRV--GSDRSLRVDVRVIAATNR 331 (509)
T ss_pred HHHhcCc-cccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeC--CCCcceecceEEEEecCC
Confidence 11111 1111122222346777889999999999999999998 99999999887554 445566778999999997
Q ss_pred CCCCCCCccChhhhcCCChhhhccccEe-EEcCCCCCHHHHH-HHHHHHHhhccCCCCCcccccCcccccCCCccccccc
Q 040742 405 VGGHYNRAKTVNENLKMSAALLSRFDLV-FILLDKPDELLDK-RVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSV 482 (581)
Q Consensus 405 ~~g~~~~~~~~~~~~~l~~all~RFdli-~~~~d~~~~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (581)
.-. .....-.+.+.|+.|+..+ +.+|+..+...|. .++.|+
T Consensus 332 ~l~------~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~f------------------------------- 374 (509)
T PRK05022 332 DLR------EEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYF------------------------------- 374 (509)
T ss_pred CHH------HHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHH-------------------------------
Confidence 510 0111123778999998754 3344444433332 222222
Q ss_pred cccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhc--CCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 040742 483 KSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTF--VFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLV 560 (581)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~--i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~lesli 560 (581)
++++ +++. -.+.+++++.+.|..| .+|-++|+|+.+|
T Consensus 375 --------------------------l~~~---~~~~~~~~~~~s~~a~~~L~~y------------~WPGNvrEL~~~i 413 (509)
T PRK05022 375 --------------------------LEQN---RARLGLRSLRLSPAAQAALLAY------------DWPGNVRELEHVI 413 (509)
T ss_pred --------------------------HHHH---HHHcCCCCCCCCHHHHHHHHhC------------CCCCcHHHHHHHH
Confidence 2222 2211 1357999999999885 5688999999999
Q ss_pred HHHHHHHhc
Q 040742 561 RLAEARARL 569 (581)
Q Consensus 561 rla~a~A~l 569 (581)
+.|...|..
T Consensus 414 ~ra~~~~~~ 422 (509)
T PRK05022 414 SRAALLARA 422 (509)
T ss_pred HHHHHhcCC
Confidence 998877664
No 57
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.42 E-value=3e-12 Score=141.23 Aligned_cols=231 Identities=24% Similarity=0.247 Sum_probs=145.1
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC---cEE-EecCCCccCCc
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR---GIY-VCGNATTKAGL 329 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~---~~~-~~~~~~~~~~l 329 (581)
..++|.....+.+...+..-. ..+.+|||.|++||||+++|++++..+++ .+. ++....+. .+
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~-~~ 262 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVA------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE-TL 262 (534)
T ss_pred CceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-HH
Confidence 367788776666655443221 11238999999999999999999998753 222 44333221 11
Q ss_pred eeEEE----ecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCC
Q 040742 330 TVAVV----KDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANP 404 (581)
Q Consensus 330 ~~~~~----~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np 404 (581)
..... +...+|......|.+..+++|++||||++.++...| .|+.+++++.+... |.....+.++.+|+|+|.
T Consensus 263 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~--~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 263 LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERV--GGNRTLKVDVRLVAATNR 340 (534)
T ss_pred HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEEC--CCCceEeecEEEEEeCCC
Confidence 11111 111122222346778889999999999999999999 99999999887654 444456677899999987
Q ss_pred CCCCCCCccChhhhcCCChhhhccccEeEE-cCCCCCHHHHH-HHHHHHHhhccCCCCCcccccCcccccCCCccccccc
Q 040742 405 VGGHYNRAKTVNENLKMSAALLSRFDLVFI-LLDKPDELLDK-RVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSV 482 (581)
Q Consensus 405 ~~g~~~~~~~~~~~~~l~~all~RFdli~~-~~d~~~~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (581)
... .....-.+.+.|+.|+..+.+ +|+..+...|. .++.|.+
T Consensus 341 ~l~------~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l------------------------------ 384 (534)
T TIGR01817 341 DLE------EAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFL------------------------------ 384 (534)
T ss_pred CHH------HHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHH------------------------------
Confidence 510 011122377899999976433 44444333332 2322222
Q ss_pred cccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHH
Q 040742 483 KSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYART-FVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVR 561 (581)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~-~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslir 561 (581)
+++ +++ ...+.+++++.+.|..| .+|-++|+|+.+++
T Consensus 385 ---------------------------~~~---~~~~~~~~~~s~~a~~~L~~~------------~WPGNvrEL~~v~~ 422 (534)
T TIGR01817 385 ---------------------------EKF---NRENGRPLTITPSAIRVLMSC------------KWPGNVRELENCLE 422 (534)
T ss_pred ---------------------------HHH---HHHcCCCCCCCHHHHHHHHhC------------CCCChHHHHHHHHH
Confidence 222 211 11357999999999875 46889999999999
Q ss_pred HHHHHHhccCCCCCCcccc
Q 040742 562 LAEARARLDLREEITAEDA 580 (581)
Q Consensus 562 la~a~A~l~~~~~V~~~Dv 580 (581)
.+-..+. ...|+.+|+
T Consensus 423 ~a~~~~~---~~~I~~~~l 438 (534)
T TIGR01817 423 RTATLSR---SGTITRSDF 438 (534)
T ss_pred HHHHhCC---CCcccHHHC
Confidence 8765543 345665554
No 58
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.41 E-value=4.5e-12 Score=142.94 Aligned_cols=229 Identities=17% Similarity=0.120 Sum_probs=141.6
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC---cEE-EecCCCccC-
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR---GIY-VCGNATTKA- 327 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~---~~~-~~~~~~~~~- 327 (581)
.+.++|.....+.++..+..-- ..+.+|||.|++||||+++|++++..+++ .+. ++.......
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 4678887766555544433211 11138999999999999999999998763 232 443332211
Q ss_pred ---CceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeC
Q 040742 328 ---GLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAAN 403 (581)
Q Consensus 328 ---~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~N 403 (581)
.+.+... .+...-.+|.+..|++|++||||++.|+.+.| .|+.+++++.+... |.....+.++.+|+|+|
T Consensus 392 ~~~elfg~~~----~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~--~~~~~~~~~~riI~~t~ 465 (638)
T PRK11388 392 LAEEFLGSDR----TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRL--DSRRLIPVDVRVIATTT 465 (638)
T ss_pred HHHHhcCCCC----cCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeC--CCCceEEeeEEEEEecc
Confidence 1221110 01112346778889999999999999999999 99999999887654 55555667899999999
Q ss_pred CCCCCCCCccChhhhcCCChhhhccccEeEE-cCCCCCHHHHH-HHHHHHHhhccCCCCCcccccCcccccCCCcccccc
Q 040742 404 PVGGHYNRAKTVNENLKMSAALLSRFDLVFI-LLDKPDELLDK-RVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLS 481 (581)
Q Consensus 404 p~~g~~~~~~~~~~~~~l~~all~RFdli~~-~~d~~~~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (581)
.... ...+.-.+.+.|+.|+...-+ +|+..+...|. .++.+
T Consensus 466 ~~l~------~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~------------------------------- 508 (638)
T PRK11388 466 ADLA------MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNN------------------------------- 508 (638)
T ss_pred CCHH------HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHH-------------------------------
Confidence 7510 111112366788888865444 33333332222 12112
Q ss_pred ccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHH
Q 040742 482 VKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVR 561 (581)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslir 561 (581)
+++++-. +....+.+++++.+.|..| .+|-++|+|+.+++
T Consensus 509 --------------------------~l~~~~~--~~~~~~~~s~~a~~~L~~y------------~WPGNvreL~~~l~ 548 (638)
T PRK11388 509 --------------------------KLRSLEK--RFSTRLKIDDDALARLVSY------------RWPGNDFELRSVIE 548 (638)
T ss_pred --------------------------HHHHHHH--HhCCCCCcCHHHHHHHHcC------------CCCChHHHHHHHHH
Confidence 2223211 1111346899999999874 56889999999999
Q ss_pred HHHHHHhccCCCCCCccc
Q 040742 562 LAEARARLDLREEITAED 579 (581)
Q Consensus 562 la~a~A~l~~~~~V~~~D 579 (581)
.+...+. ...|+.+|
T Consensus 549 ~~~~~~~---~~~i~~~~ 563 (638)
T PRK11388 549 NLALSSD---NGRIRLSD 563 (638)
T ss_pred HHHHhCC---CCeecHHH
Confidence 7765432 23455444
No 59
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.41 E-value=7.3e-12 Score=139.14 Aligned_cols=174 Identities=20% Similarity=0.187 Sum_probs=107.4
Q ss_pred HhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC----------c-EE
Q 040742 250 QSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR----------G-IY 318 (581)
Q Consensus 250 ~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~----------~-~~ 318 (581)
..-.++++|++.+.+.++..+..+.. .|++|+||||||||++|+.+++.... . +.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~~--------------~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPFP--------------QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCCC--------------CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 33456789999988887766654321 28999999999999999999876621 1 22
Q ss_pred EecCCCccC------CceeEEEecC----------ccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEE
Q 040742 319 VCGNATTKA------GLTVAVVKDS----------VTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCV 381 (581)
Q Consensus 319 ~~~~~~~~~------~l~~~~~~~~----------~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i 381 (581)
+++...... .+.+.. .++ ..|......|.+..+++|++||||++.++...| .|+.+|+++.+
T Consensus 216 i~~~~l~~d~~~i~~~llg~~-~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v 294 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSV-HDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRV 294 (615)
T ss_pred EechhccCCHHHHhHHhcCCc-cHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeE
Confidence 444322100 111110 000 011222345666677899999999999999988 99999999887
Q ss_pred EEeeCCe---------------eEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHH
Q 040742 382 SVAKAGL---------------VASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKR 446 (581)
Q Consensus 382 ~i~k~g~---------------~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~ 446 (581)
.+..+.. ....+..+.++++++.... . ++++|.+||..+ .+++ .+.+....
T Consensus 295 ~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~--~----------l~~aLrSR~~~i-~~~p-ls~edi~~ 360 (615)
T TIGR02903 295 EFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE--E----------INPALRSRCAEV-FFEP-LTPEDIAL 360 (615)
T ss_pred EeecceeccCCcccchhhhhhcccCccceEEEEEecccccc--c----------cCHHHHhceeEE-EeCC-CCHHHHHH
Confidence 6642211 0112445677766554221 1 789999999754 4443 44444455
Q ss_pred HHHHHH
Q 040742 447 VSEHIM 452 (581)
Q Consensus 447 i~~~il 452 (581)
|+++.+
T Consensus 361 Il~~~a 366 (615)
T TIGR02903 361 IVLNAA 366 (615)
T ss_pred HHHHHH
Confidence 544443
No 60
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.1e-13 Score=136.27 Aligned_cols=170 Identities=24% Similarity=0.204 Sum_probs=104.3
Q ss_pred CccccccHHHHHHHHHHHhcCcc-cccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCce
Q 040742 253 CPSIYGHELVKAGITLALFGGVR-KHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLT 330 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~-~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~ 330 (581)
..+|.|.+.+|+-|-.+++-... .....+ ..|.+-.|||+||||||||.||+++|..++..+| ++. ..|+
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F~G---irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs-----stlt 282 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFFKG---IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS-----STLT 282 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHHhh---cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech-----hhhh
Confidence 35788999988877666442110 000111 1333446999999999999999999999886655 332 2233
Q ss_pred eEEEecCccccceeccceeeecCceEEEEcCCCCCCHH------------HH-HHHHHHHccEEEEeeCCeeEe--eCCC
Q 040742 331 VAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE------------HQ-ALLEAMEQQCVSVAKAGLVAS--LSAR 395 (581)
Q Consensus 331 ~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~------------~~-~L~~~me~~~i~i~k~g~~~~--~~~~ 395 (581)
..+.-+...-...+-.-+-. ....++||||||.+... .. .|+-.|+ |.... ....
T Consensus 283 SKwRGeSEKlvRlLFemARf-yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD---------G~~~t~e~~k~ 352 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARF-YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD---------GVQGTLENSKV 352 (491)
T ss_pred hhhccchHHHHHHHHHHHHH-hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh---------cccccccccee
Confidence 22221110000000000011 13679999999886533 12 3555554 22222 2345
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhh
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSL 454 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~ 454 (581)
+.|+||+|-+ |+ |++||++|| --.++.+.|+.+....+.+..|..
T Consensus 353 VmVLAATN~P---Wd----------iDEAlrRRl-EKRIyIPLP~~~~R~~Li~~~l~~ 397 (491)
T KOG0738|consen 353 VMVLAATNFP---WD----------IDEALRRRL-EKRIYIPLPDAEARSALIKILLRS 397 (491)
T ss_pred EEEEeccCCC---cc----------hHHHHHHHH-hhheeeeCCCHHHHHHHHHHhhcc
Confidence 7899999987 55 999999999 457778999999998887666653
No 61
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.40 E-value=5.4e-12 Score=143.74 Aligned_cols=217 Identities=14% Similarity=0.198 Sum_probs=131.4
Q ss_pred CCCHHHHHHHHHHHhh--------cCchHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEe
Q 040742 224 SFSPRDLEFIVKFSEE--------SGSDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVV 295 (581)
Q Consensus 224 ~~~~~~~~~i~~~~~~--------~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~ 295 (581)
.++.+++..+..-+.. .....+..+.+.+...|+||+.+++.+..++...... ..+. -+...++||+
T Consensus 416 ~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g-~~~~----~~p~~~~lf~ 490 (731)
T TIGR02639 416 NVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAG-LGNP----NKPVGSFLFT 490 (731)
T ss_pred ccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcC-CCCC----CCCceeEEEE
Confidence 4677776666544421 0123456788899999999999999988777642110 0000 1111268999
Q ss_pred CCCCChHHHHHHHHHHHCCCcEE-EecCCCcc----CCceeEEEecCccccceec-cc----eeeecCceEEEEcCCCCC
Q 040742 296 GDPGLGKSQLLQAAAAVSPRGIY-VCGNATTK----AGLTVAVVKDSVTNDYAFE-AG----AMVLADSGLCCIDEFDKM 365 (581)
Q Consensus 296 G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~----~~l~~~~~~~~~~~~~~~~-~g----~l~~a~~gil~iDEi~~~ 365 (581)
||||||||.+|+++|+.+...+. ++...... ..+.++. .|-.... .| .+.....+|++|||++++
T Consensus 491 Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~-----~gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 491 GPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP-----PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred CCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC-----CCCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 99999999999999999976544 33322111 1111110 0000000 11 112234689999999999
Q ss_pred CHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCC------ccC----hhhhc--CCChhhhccccEe
Q 040742 366 SAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNR------AKT----VNENL--KMSAALLSRFDLV 432 (581)
Q Consensus 366 ~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~------~~~----~~~~~--~l~~all~RFdli 432 (581)
.++.+ .|+++|++|.++.. .|....+ .++.+|+|+|.....+.. ... +...+ .+.++|++|||-+
T Consensus 566 ~~~~~~~Ll~~ld~g~~~d~-~g~~vd~-~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~V 643 (731)
T TIGR02639 566 HPDIYNILLQVMDYATLTDN-NGRKADF-RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAI 643 (731)
T ss_pred CHHHHHHHHHhhccCeeecC-CCcccCC-CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeE
Confidence 99988 99999999998754 3443333 358899999975211100 000 11111 3889999999988
Q ss_pred EEcCCCCCHHHHHHHHHHHHh
Q 040742 433 FILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 433 ~~~~d~~~~~~d~~i~~~il~ 453 (581)
+.+.+.. .+....|+...++
T Consensus 644 i~F~pLs-~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 644 IHFNPLS-EEVLEKIVQKFVD 663 (731)
T ss_pred EEcCCCC-HHHHHHHHHHHHH
Confidence 8766544 4555556555444
No 62
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-12 Score=127.86 Aligned_cols=159 Identities=21% Similarity=0.251 Sum_probs=102.9
Q ss_pred HHHHHhhCccccccHHHHHHHHHHHhcCcccccC--CCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecC
Q 040742 246 RQIVQSICPSIYGHELVKAGITLALFGGVRKHSM--YQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGN 322 (581)
Q Consensus 246 ~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~--~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~ 322 (581)
..|.+.+...++||+.+|+.+..+......+... +.+.. .-+..||||+||+|+|||.||+.+|+.+.-.+- ...+
T Consensus 53 ~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dv-EL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADAT 131 (408)
T COG1219 53 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDV-ELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADAT 131 (408)
T ss_pred HHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCce-eeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeecccc
Confidence 3466677788999999999999887765432211 11111 123369999999999999999999999987765 3444
Q ss_pred CCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH--------------HH-HHHHHHHccEEEEeeCC
Q 040742 323 ATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE--------------HQ-ALLEAMEQQCVSVAKAG 387 (581)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~--------------~~-~L~~~me~~~i~i~k~g 387 (581)
..+.+|+.+.-+..-...-...-...+..|..||++|||||++... .| +|+..||.-..+++..|
T Consensus 132 tLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqG 211 (408)
T COG1219 132 TLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQG 211 (408)
T ss_pred chhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCC
Confidence 5556665543221110000001123345678999999999997632 35 99999997777776444
Q ss_pred eeEeeCCCeEEEEeeCCC
Q 040742 388 LVASLSARTSVLAAANPV 405 (581)
Q Consensus 388 ~~~~~~~~~~viaa~Np~ 405 (581)
.....+-.|.-+-|+|-.
T Consensus 212 GRKHP~Qe~iqvDT~NIL 229 (408)
T COG1219 212 GRKHPQQEFIQVDTSNIL 229 (408)
T ss_pred CCCCCccceEEEccccee
Confidence 333333456667777754
No 63
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.39 E-value=3.6e-12 Score=145.96 Aligned_cols=174 Identities=22% Similarity=0.284 Sum_probs=103.4
Q ss_pred HHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCC
Q 040742 246 RQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNAT 324 (581)
Q Consensus 246 ~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~ 324 (581)
..+.+.+..+++|++.+|+.+...+........ .++ .++||+||||||||++|+++++.+...++ ++..+.
T Consensus 312 ~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~-------~~~-~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~ 383 (775)
T TIGR00763 312 KRAKEILDEDHYGLKKVKERILEYLAVQKLRGK-------MKG-PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGV 383 (775)
T ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC-------CCC-ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCc
Confidence 455677888899999999998765543211100 122 27999999999999999999999977665 432211
Q ss_pred -ccCCceeEEEecCccccce-ecccee----e--ecCceEEEEcCCCCCCHH----H-HHHHHHHHc---cEEEEeeCCe
Q 040742 325 -TKAGLTVAVVKDSVTNDYA-FEAGAM----V--LADSGLCCIDEFDKMSAE----H-QALLEAMEQ---QCVSVAKAGL 388 (581)
Q Consensus 325 -~~~~l~~~~~~~~~~~~~~-~~~g~l----~--~a~~gil~iDEi~~~~~~----~-~~L~~~me~---~~i~i~k~g~ 388 (581)
....+.+.. ..|. ..+|.+ . ...+.|++|||+|++.+. . .+|+++|+. +.+.-...+.
T Consensus 384 ~~~~~i~g~~------~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~ 457 (775)
T TIGR00763 384 RDEAEIRGHR------RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDV 457 (775)
T ss_pred ccHHHHcCCC------CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCc
Confidence 111111100 0000 001111 1 123469999999999753 2 378888874 2222111111
Q ss_pred eEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHH
Q 040742 389 VASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSE 449 (581)
Q Consensus 389 ~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~ 449 (581)
...+ .++.+|+|+|... .++++|++||++ +.+ ..++.+....|++
T Consensus 458 ~~d~-s~v~~I~TtN~~~-------------~i~~~L~~R~~v-i~~-~~~~~~e~~~I~~ 502 (775)
T TIGR00763 458 PFDL-SKVIFIATANSID-------------TIPRPLLDRMEV-IEL-SGYTEEEKLEIAK 502 (775)
T ss_pred eecc-CCEEEEEecCCch-------------hCCHHHhCCeeE-Eec-CCCCHHHHHHHHH
Confidence 1222 3678899999852 189999999964 444 4444555555543
No 64
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.4e-12 Score=128.01 Aligned_cols=133 Identities=28% Similarity=0.388 Sum_probs=86.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeeec---CceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLA---DSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a---~~gil~iDEi~~~~ 366 (581)
.|||+||||||||.|||++|+.....+. +.|... ....+-+ |.. +.-..+.+| ...|+||||||.+.
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl-----VqKYiGE---GaR-lVRelF~lArekaPsIIFiDEIDAIg 257 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL-----VQKYIGE---GAR-LVRELFELAREKAPSIIFIDEIDAIG 257 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH-----HHHHhcc---chH-HHHHHHHHHhhcCCeEEEEechhhhh
Confidence 6999999999999999999998766553 444322 1100000 100 000111122 35899999998754
Q ss_pred H-----------HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhh--ccccEe
Q 040742 367 A-----------EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALL--SRFDLV 432 (581)
Q Consensus 367 ~-----------~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all--~RFdli 432 (581)
. +.| .|++.|.+-. |... -.++-||+|||... -|+|||| -|||-.
T Consensus 258 ~kR~d~~t~gDrEVQRTmleLL~qlD------GFD~--~~nvKVI~ATNR~D-------------~LDPALLRPGR~DRk 316 (406)
T COG1222 258 AKRFDSGTSGDREVQRTMLELLNQLD------GFDP--RGNVKVIMATNRPD-------------ILDPALLRPGRFDRK 316 (406)
T ss_pred cccccCCCCchHHHHHHHHHHHHhcc------CCCC--CCCeEEEEecCCcc-------------ccChhhcCCCcccce
Confidence 2 257 8888887522 2221 34578999999863 1889999 599986
Q ss_pred EEcCCCCCHHHHHHHHHHHHhhccCC
Q 040742 433 FILLDKPDELLDKRVSEHIMSLHSGY 458 (581)
Q Consensus 433 ~~~~d~~~~~~d~~i~~~il~~~~~~ 458 (581)
+-+ +.|+.+....| ++.|...
T Consensus 317 IEf-plPd~~gR~~I----l~IHtrk 337 (406)
T COG1222 317 IEF-PLPDEEGRAEI----LKIHTRK 337 (406)
T ss_pred eec-CCCCHHHHHHH----HHHHhhh
Confidence 665 58998887766 6766553
No 65
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1e-11 Score=137.16 Aligned_cols=210 Identities=15% Similarity=0.201 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHh--------hcCchHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeC
Q 040742 225 FSPRDLEFIVKFSE--------ESGSDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVG 296 (581)
Q Consensus 225 ~~~~~~~~i~~~~~--------~~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G 296 (581)
++++++..+..-|. +.....+..+.+.+...|+||+.+..++..++...+.. +.+. .|.-...||.|
T Consensus 454 v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaG-L~dp----~rPigsFlF~G 528 (786)
T COG0542 454 VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAG-LGDP----NRPIGSFLFLG 528 (786)
T ss_pred cCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcC-CCCC----CCCceEEEeeC
Confidence 56666776655552 11234456788899999999999999998877532110 1111 22223799999
Q ss_pred CCCChHHHHHHHHHHHCCC---cE-EEecCCC-----------ccCCceeEEEecCccccceeccceeeec----CceEE
Q 040742 297 DPGLGKSQLLQAAAAVSPR---GI-YVCGNAT-----------TKAGLTVAVVKDSVTNDYAFEAGAMVLA----DSGLC 357 (581)
Q Consensus 297 ~pGtGKT~la~~la~~~~~---~~-~~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~g~l~~a----~~gil 357 (581)
|+|+|||.||+++|..+.. .+ .++.... ++.|+.+. + +.|.+.-| ...|+
T Consensus 529 PTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGy---e--------eGG~LTEaVRr~PySVi 597 (786)
T COG0542 529 PTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGY---E--------EGGQLTEAVRRKPYSVI 597 (786)
T ss_pred CCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCcee---c--------cccchhHhhhcCCCeEE
Confidence 9999999999999999863 21 1221110 12222221 1 12222222 24699
Q ss_pred EEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCC----C-----CCccChh----hhc--CC
Q 040742 358 CIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGH----Y-----NRAKTVN----ENL--KM 421 (581)
Q Consensus 358 ~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~----~-----~~~~~~~----~~~--~l 421 (581)
++|||+|+.++.. .|+++|++|+++-.. |.++.+ .++.||.|+|-.... . .....+. +.+ .+
T Consensus 598 LlDEIEKAHpdV~nilLQVlDdGrLTD~~-Gr~VdF-rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F 675 (786)
T COG0542 598 LLDEIEKAHPDVFNLLLQVLDDGRLTDGQ-GRTVDF-RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHF 675 (786)
T ss_pred EechhhhcCHHHHHHHHHHhcCCeeecCC-CCEEec-ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhC
Confidence 9999999999998 899999999999864 444444 358899999975211 0 1011111 122 48
Q ss_pred ChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 422 SAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 422 ~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
.|.|++|+|-|+++ ...+.+....|....+.
T Consensus 676 ~PEFLNRid~II~F-~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 676 RPEFLNRIDEIIPF-NPLSKEVLERIVDLQLN 706 (786)
T ss_pred CHHHHhhcccEEec-cCCCHHHHHHHHHHHHH
Confidence 99999999986665 44555565666555544
No 66
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.38 E-value=6.1e-12 Score=137.73 Aligned_cols=230 Identities=19% Similarity=0.210 Sum_probs=138.8
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCc----EEEecCCCccCCc
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRG----IYVCGNATTKAGL 329 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~----~~~~~~~~~~~~l 329 (581)
.+++|.....+.+...+..-- ..+.+|||.|++||||+++|++++..+.+. +.++...... .+
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A------------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~-~~ 270 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLA------------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD-DV 270 (520)
T ss_pred cceeECCHHHHHHHHHHHHHh------------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH-HH
Confidence 467787665554444332110 001389999999999999999998877542 2233333211 11
Q ss_pred eeEEEec----CccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCC
Q 040742 330 TVAVVKD----SVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANP 404 (581)
Q Consensus 330 ~~~~~~~----~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np 404 (581)
..+..+. ...+......|.+..|++|++||||++.++...| .|+.+++++.+... |.....+.++.||+|++.
T Consensus 271 ~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 271 VESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRV--GEDHEVHVDVRVICATQK 348 (520)
T ss_pred HHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccC--CCCcceeeeeEEEEecCC
Confidence 1000111 0111112345667788999999999999999999 99999999876543 444555677889999886
Q ss_pred CCCCCCCccChhhhcCCChhhhccccE-eEEcCCCCCHHHHHH-HHHHHHhhccCCCCCcccccCcccccCCCccccccc
Q 040742 405 VGGHYNRAKTVNENLKMSAALLSRFDL-VFILLDKPDELLDKR-VSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSV 482 (581)
Q Consensus 405 ~~g~~~~~~~~~~~~~l~~all~RFdl-i~~~~d~~~~~~d~~-i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (581)
... .+.+.-.+.+.|+.|+.. .+.+|+..+...|.. ++.+
T Consensus 349 ~l~------~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~-------------------------------- 390 (520)
T PRK10820 349 NLV------ELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTEL-------------------------------- 390 (520)
T ss_pred CHH------HHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHH--------------------------------
Confidence 410 111122367889999764 344444444333322 1111
Q ss_pred cccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhc--CCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 040742 483 KSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTF--VFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLV 560 (581)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~--i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~lesli 560 (581)
++++| +++. -.|.+++++.+.|..| .+|-++|+|+.++
T Consensus 391 -------------------------fl~~~---~~~~g~~~~~ls~~a~~~L~~y------------~WPGNvreL~nvl 430 (520)
T PRK10820 391 -------------------------FVARF---ADEQGVPRPKLAADLNTVLTRY------------GWPGNVRQLKNAI 430 (520)
T ss_pred -------------------------HHHHH---HHHcCCCCCCcCHHHHHHHhcC------------CCCCHHHHHHHHH
Confidence 23332 2221 1467999999999874 4688999999998
Q ss_pred HHHHHHHhccCCCCCCccc
Q 040742 561 RLAEARARLDLREEITAED 579 (581)
Q Consensus 561 rla~a~A~l~~~~~V~~~D 579 (581)
.-|-..+. ...++.+|
T Consensus 431 ~~a~~~~~---~~~i~~~~ 446 (520)
T PRK10820 431 YRALTQLE---GYELRPQD 446 (520)
T ss_pred HHHHHhCC---CCcccHHH
Confidence 87665433 33455554
No 67
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.37 E-value=1.2e-12 Score=121.52 Aligned_cols=133 Identities=23% Similarity=0.303 Sum_probs=88.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCc---EE-EecCCCccC----CceeEEEecCccccceeccceeeecCceEEEEcC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRG---IY-VCGNATTKA----GLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDE 361 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~---~~-~~~~~~~~~----~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDE 361 (581)
.+|||+|++||||+.+|+++++.+++. +. ++....+.. .|.+. ......+......|.+..|++|++||||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~-~~~~~~~~~~~~~G~l~~A~~GtL~Ld~ 101 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH-EKGAFTGARSDKKGLLEQANGGTLFLDE 101 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB-CSSSSTTTSSEBEHHHHHTTTSEEEEET
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc-ccccccccccccCCceeeccceEEeecc
Confidence 489999999999999999999988652 22 444333211 11111 1111223334567999999999999999
Q ss_pred CCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccE
Q 040742 362 FDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDL 431 (581)
Q Consensus 362 i~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdl 431 (581)
++.|++..| .|+.+|+++.+... |.....+.++.+|+|+|..- ....++-.+.+.|+.|+..
T Consensus 102 I~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~st~~~l------~~~v~~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 102 IEDLPPELQAKLLRVLEEGKFTRL--GSDKPVPVDVRIIASTSKDL------EELVEQGRFREDLYYRLNV 164 (168)
T ss_dssp GGGS-HHHHHHHHHHHHHSEEECC--TSSSEEE--EEEEEEESS-H------HHHHHTTSS-HHHHHHHTT
T ss_pred hhhhHHHHHHHHHHHHhhchhccc--cccccccccceEEeecCcCH------HHHHHcCCChHHHHHHhce
Confidence 999999999 99999999998765 54556677899999999651 0112222377888888754
No 68
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.32 E-value=7e-11 Score=136.59 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=117.7
Q ss_pred HHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC---cE-EEe
Q 040742 245 FRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR---GI-YVC 320 (581)
Q Consensus 245 ~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~---~~-~~~ 320 (581)
+..+.+.+...|+||+.+.+.+..++...... +.+. .+....+||+||||||||++|+++++.+.. .+ ++.
T Consensus 556 l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g-l~~~----~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d 630 (852)
T TIGR03346 556 LLHMEEVLHERVVGQDEAVEAVSDAIRRSRAG-LSDP----NRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID 630 (852)
T ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcc-CCCC----CCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 45667778899999999999998887643210 0000 111237999999999999999999998743 22 232
Q ss_pred cCCCcc----CCceeEEEecCcccccee-cccee----eecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeE
Q 040742 321 GNATTK----AGLTVAVVKDSVTNDYAF-EAGAM----VLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVA 390 (581)
Q Consensus 321 ~~~~~~----~~l~~~~~~~~~~~~~~~-~~g~l----~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~ 390 (581)
...... ..+.++. .|-... +.|.+ ......|++|||+++++++.+ .|+++|++|.++.. .|...
T Consensus 631 ~s~~~~~~~~~~l~g~~-----~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~-~g~~v 704 (852)
T TIGR03346 631 MSEYMEKHSVARLIGAP-----PGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG-QGRTV 704 (852)
T ss_pred chhhcccchHHHhcCCC-----CCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecC-CCeEE
Confidence 221111 0111100 000001 11121 112346999999999999998 99999999998854 24444
Q ss_pred eeCCCeEEEEeeCCCCCCCCC------ccChhh------hcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 391 SLSARTSVLAAANPVGGHYNR------AKTVNE------NLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 391 ~~~~~~~viaa~Np~~g~~~~------~~~~~~------~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
.+ .++.||+|+|-....+.. ...+.+ .-.+.+.|+.|+|.++++.+ ++.+....|+...+
T Consensus 705 d~-rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~P-L~~e~l~~I~~l~L 776 (852)
T TIGR03346 705 DF-RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHP-LGREQIARIVEIQL 776 (852)
T ss_pred ec-CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCC-cCHHHHHHHHHHHH
Confidence 44 358899999974221110 011111 11488999999998777655 44555555544444
No 69
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.31 E-value=6.9e-11 Score=135.72 Aligned_cols=196 Identities=13% Similarity=0.118 Sum_probs=119.8
Q ss_pred HHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC---cEE-E
Q 040742 244 IFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR---GIY-V 319 (581)
Q Consensus 244 ~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~---~~~-~ 319 (581)
.+..|.+.+...|+||+.+..++..++...... ..+. -+....+||+||||||||.+|+++++.+.. .+. +
T Consensus 556 ~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~g-l~~~----~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~ 630 (852)
T TIGR03345 556 AVLSLPDRLAERVIGQDHALEAIAERIRTARAG-LEDP----RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITI 630 (852)
T ss_pred HHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcC-CCCC----CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEE
Confidence 345678889999999999999998877532110 0000 112126899999999999999999998842 222 3
Q ss_pred ecCCC----ccCCceeEEEecCccccce-ecccee----eecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCee
Q 040742 320 CGNAT----TKAGLTVAVVKDSVTNDYA-FEAGAM----VLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLV 389 (581)
Q Consensus 320 ~~~~~----~~~~l~~~~~~~~~~~~~~-~~~g~l----~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~ 389 (581)
+.... +...|.++. -|-.. -+.|.+ .....+|++|||++++.++.. .|+++|++|.++.. .|..
T Consensus 631 dmse~~~~~~~~~l~g~~-----~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~-~Gr~ 704 (852)
T TIGR03345 631 NMSEFQEAHTVSRLKGSP-----PGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDG-EGRE 704 (852)
T ss_pred eHHHhhhhhhhccccCCC-----CCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecC-CCcE
Confidence 32111 111111110 00000 112222 223468999999999999988 89999999998765 3555
Q ss_pred EeeCCCeEEEEeeCCCCCCCCC---------c-cChh----hhc--CCChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 390 ASLSARTSVLAAANPVGGHYNR---------A-KTVN----ENL--KMSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 390 ~~~~~~~~viaa~Np~~g~~~~---------~-~~~~----~~~--~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
+.+. +++||.|+|-..+.|.. . ..+. ..+ .+.++|++|+| ++.+ ...+.+....|+...++
T Consensus 705 vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F-~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 705 IDFK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPY-LPLDDDVLAAIVRLKLD 781 (852)
T ss_pred Eecc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEe-CCCCHHHHHHHHHHHHH
Confidence 5554 58999999975322110 0 1111 111 38999999998 4444 45566665666544443
No 70
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.31 E-value=1.8e-11 Score=131.49 Aligned_cols=159 Identities=21% Similarity=0.214 Sum_probs=94.1
Q ss_pred ccccccHHHHHHHHHHH--hcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCce
Q 040742 254 PSIYGHELVKAGITLAL--FGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLT 330 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l--~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~ 330 (581)
.+|.|.+.+|+.+.... +...... +.+...-.+||+||||||||.+|+++|+.++..++ +.... +.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~------~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~-----l~ 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASN------YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGK-----LF 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHh------cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHH-----hc
Confidence 45789999988765321 1110000 00111126999999999999999999999887665 33221 11
Q ss_pred eEEEecCcc--ccceeccceeeecCceEEEEcCCCCCCHH---------H---H-HHHHHHHccEEEEeeCCeeEeeCCC
Q 040742 331 VAVVKDSVT--NDYAFEAGAMVLADSGLCCIDEFDKMSAE---------H---Q-ALLEAMEQQCVSVAKAGLVASLSAR 395 (581)
Q Consensus 331 ~~~~~~~~~--~~~~~~~g~l~~a~~gil~iDEi~~~~~~---------~---~-~L~~~me~~~i~i~k~g~~~~~~~~ 395 (581)
......... ......+. .....|+||||+|++... . . .++..|++. ..+
T Consensus 297 ~~~vGese~~l~~~f~~A~---~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-------------~~~ 360 (489)
T CHL00195 297 GGIVGESESRMRQMIRIAE---ALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-------------KSP 360 (489)
T ss_pred ccccChHHHHHHHHHHHHH---hcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-------------CCc
Confidence 111100000 00000000 123689999999976321 1 1 344555421 245
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
+.||||+|.... +++++++ |||.++. .+.|+.+....|.+..+.
T Consensus 361 V~vIaTTN~~~~-------------Ld~allR~GRFD~~i~-v~lP~~~eR~~Il~~~l~ 406 (489)
T CHL00195 361 VFVVATANNIDL-------------LPLEILRKGRFDEIFF-LDLPSLEEREKIFKIHLQ 406 (489)
T ss_pred eEEEEecCChhh-------------CCHHHhCCCcCCeEEE-eCCcCHHHHHHHHHHHHh
Confidence 789999997631 8999997 9998665 578888888887665554
No 71
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.31 E-value=1.5e-10 Score=133.49 Aligned_cols=218 Identities=16% Similarity=0.181 Sum_probs=130.6
Q ss_pred CCCCHHHHHHHHHHHhh--------cCchHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEE
Q 040742 223 FSFSPRDLEFIVKFSEE--------SGSDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIV 294 (581)
Q Consensus 223 ~~~~~~~~~~i~~~~~~--------~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL 294 (581)
..++.+++..+..-+.. ...+.+..|.+.+...|+||+.+...+..++...... ..+. -+.-..+||
T Consensus 470 ~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~g-l~~~----~~p~~~~lf 544 (821)
T CHL00095 470 PVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVG-LKNP----NRPIASFLF 544 (821)
T ss_pred CccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhc-ccCC----CCCceEEEE
Confidence 45777777766554421 1123345788899999999999999998877633210 0001 111126899
Q ss_pred eCCCCChHHHHHHHHHHHCCC---cE-EEecCCCc----cCCceeEEEecCcccccee-ccce----eeecCceEEEEcC
Q 040742 295 VGDPGLGKSQLLQAAAAVSPR---GI-YVCGNATT----KAGLTVAVVKDSVTNDYAF-EAGA----MVLADSGLCCIDE 361 (581)
Q Consensus 295 ~G~pGtGKT~la~~la~~~~~---~~-~~~~~~~~----~~~l~~~~~~~~~~~~~~~-~~g~----l~~a~~gil~iDE 361 (581)
+||||||||.||+++|+.+.. .+ .+...... ...+.++ + .|-... +.|. +......|+++||
T Consensus 545 ~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~----~-~gyvg~~~~~~l~~~~~~~p~~VvllDe 619 (821)
T CHL00095 545 SGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGS----P-PGYVGYNEGGQLTEAVRKKPYTVVLFDE 619 (821)
T ss_pred ECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCC----C-CcccCcCccchHHHHHHhCCCeEEEECC
Confidence 999999999999999998742 22 22221110 0011110 0 000000 1111 1122347999999
Q ss_pred CCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCC---------CCCC------ccC---hh----hh
Q 040742 362 FDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGG---------HYNR------AKT---VN----EN 418 (581)
Q Consensus 362 i~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g---------~~~~------~~~---~~----~~ 418 (581)
++++.++.+ .|+++|++|+++... |....+ .++.+|.|+|.... .|.. ... +. +.
T Consensus 620 ieka~~~v~~~Llq~le~g~~~d~~-g~~v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~ 697 (821)
T CHL00095 620 IEKAHPDIFNLLLQILDDGRLTDSK-GRTIDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEE 697 (821)
T ss_pred hhhCCHHHHHHHHHHhccCceecCC-CcEEec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHH
Confidence 999999988 999999999998753 455554 46999999996421 0110 000 11 11
Q ss_pred c--CCChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 419 L--KMSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 419 ~--~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
+ .+.|.|++|+|-++++.+.. .+....|++..++
T Consensus 698 ~~~~f~peflnRid~ii~F~pL~-~~~l~~Iv~~~l~ 733 (821)
T CHL00095 698 LKQFFRPEFLNRLDEIIVFRQLT-KNDVWEIAEIMLK 733 (821)
T ss_pred HHHhcCHHHhccCCeEEEeCCCC-HHHHHHHHHHHHH
Confidence 1 38899999999877765544 4444555544443
No 72
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.31 E-value=1.2e-11 Score=130.70 Aligned_cols=130 Identities=24% Similarity=0.361 Sum_probs=78.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeee---cCceEEEEcCCCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVL---ADSGLCCIDEFDKM 365 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~---a~~gil~iDEi~~~ 365 (581)
.++||+||||||||++|+++++.+...++ +.+... ....... +..... ..+.. ...+|+||||+|.+
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l-----~~~~~g~---~~~~i~-~~f~~a~~~~p~IlfiDEiD~l 236 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL-----VQKFIGE---GARLVR-ELFELAREKAPSIIFIDEIDAI 236 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH-----hHhhccc---hHHHHH-HHHHHHHhcCCeEEEEechhhh
Confidence 37999999999999999999998876554 433221 1000000 000000 01111 23579999999987
Q ss_pred C-----------HHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccE
Q 040742 366 S-----------AEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDL 431 (581)
Q Consensus 366 ~-----------~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdl 431 (581)
. .+.+ .+.+.+..-. +. .-..++.||+|+|... .+++++++ |||.
T Consensus 237 ~~~r~~~~~~~~~~~~~~l~~lL~~ld------~~--~~~~~v~VI~aTn~~~-------------~ld~allRpgRfd~ 295 (389)
T PRK03992 237 AAKRTDSGTSGDREVQRTLMQLLAEMD------GF--DPRGNVKIIAATNRID-------------ILDPAILRPGRFDR 295 (389)
T ss_pred hcccccCCCCccHHHHHHHHHHHHhcc------cc--CCCCCEEEEEecCChh-------------hCCHHHcCCccCce
Confidence 3 2233 4555553211 11 1123578999999863 18899996 9998
Q ss_pred eEEcCCCCCHHHHHHHHHH
Q 040742 432 VFILLDKPDELLDKRVSEH 450 (581)
Q Consensus 432 i~~~~d~~~~~~d~~i~~~ 450 (581)
.+. .+.|+.+....|.+.
T Consensus 296 ~I~-v~~P~~~~R~~Il~~ 313 (389)
T PRK03992 296 IIE-VPLPDEEGRLEILKI 313 (389)
T ss_pred EEE-ECCCCHHHHHHHHHH
Confidence 654 567887777776443
No 73
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.30 E-value=6.4e-11 Score=129.02 Aligned_cols=198 Identities=23% Similarity=0.268 Sum_probs=128.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC---cEE-EecCCCccCCceeEEEec----CccccceeccceeeecCceEEEEcC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR---GIY-VCGNATTKAGLTVAVVKD----SVTNDYAFEAGAMVLADSGLCCIDE 361 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~---~~~-~~~~~~~~~~l~~~~~~~----~~~~~~~~~~g~l~~a~~gil~iDE 361 (581)
.++|+.|++||||+.+|++++..+++ .+. ++...... .+....... ..+|......|.+..+++|.+||||
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~ 240 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-DLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-HHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEec
Confidence 48999999999999999999998864 222 33322211 111111111 1122233457888899999999999
Q ss_pred CCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhcccc-EeEEcCCCC
Q 040742 362 FDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD-LVFILLDKP 439 (581)
Q Consensus 362 i~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFd-li~~~~d~~ 439 (581)
++.++...| .|+.+++++.+... |.....+.++.+|+|++.... ...+.-.+.+.|+.||. +.+.+|+..
T Consensus 241 i~~l~~~~q~~L~~~l~~~~~~~~--~~~~~~~~~~rii~~~~~~l~------~~~~~~~~~~~L~~~l~~~~i~~PpLr 312 (469)
T PRK10923 241 IGDMPLDVQTRLLRVLADGQFYRV--GGYAPVKVDVRIIAATHQNLE------QRVQEGKFREDLFHRLNVIRVHLPPLR 312 (469)
T ss_pred cccCCHHHHHHHHHHHhcCcEEeC--CCCCeEEeeEEEEEeCCCCHH------HHHHcCCchHHHHHHhcceeecCCCcc
Confidence 999999998 99999999887664 444455667899999987510 01112237789999995 444444444
Q ss_pred CHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHH-HHHh
Q 040742 440 DELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIA-YART 518 (581)
Q Consensus 440 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~-~ar~ 518 (581)
+...|... +++.|+. +++.
T Consensus 313 eR~~Di~~------------------------------------------------------------l~~~~l~~~~~~ 332 (469)
T PRK10923 313 ERREDIPR------------------------------------------------------------LARHFLQVAARE 332 (469)
T ss_pred cchhhHHH------------------------------------------------------------HHHHHHHHHHHH
Confidence 43333211 1223332 2222
Q ss_pred c-C-CCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHh
Q 040742 519 F-V-FPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARAR 568 (581)
Q Consensus 519 ~-i-~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~ 568 (581)
. . .+.+++++.+.|..| .+|-++|+|+.+++.+...+.
T Consensus 333 ~~~~~~~~~~~a~~~L~~~------------~wpgNv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 333 LGVEAKLLHPETEAALTRL------------AWPGNVRQLENTCRWLTVMAA 372 (469)
T ss_pred cCCCCCCcCHHHHHHHHhC------------CCCChHHHHHHHHHHHHHhCC
Confidence 1 1 235899999999874 568899999999988776554
No 74
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.29 E-value=4.4e-11 Score=135.78 Aligned_cols=221 Identities=22% Similarity=0.240 Sum_probs=138.1
Q ss_pred cccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC---cE-EEecCCCccCCce
Q 040742 255 SIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR---GI-YVCGNATTKAGLT 330 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~---~~-~~~~~~~~~~~l~ 330 (581)
.++|.....+.+...+..-. ..+.+||++|++|||||++|++++..+++ .+ .++..... .++.
T Consensus 377 ~liG~S~~~~~~~~~~~~~a------------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~-~~~~ 443 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVA------------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP-AGLL 443 (686)
T ss_pred ceeecCHHHHHHHHHHHHHh------------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCC-hhHh
Confidence 58888777776654443211 11238999999999999999999988753 22 23333221 1111
Q ss_pred eEEEec----CccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC
Q 040742 331 VAVVKD----SVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV 405 (581)
Q Consensus 331 ~~~~~~----~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~ 405 (581)
...... ...|......|.+..|++|++||||++.++.+.| .|+.+++++.+... |.....+.++.+|+|+|..
T Consensus 444 ~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~--g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 444 ESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL--GSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred hhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeC--CCCCcccceEEEEEeCCCC
Confidence 111111 1122222345667788999999999999999999 99999999877654 4445556788999999975
Q ss_pred CCCCCCccChhhhcCCChhhhccccEeEE-cCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccc
Q 040742 406 GGHYNRAKTVNENLKMSAALLSRFDLVFI-LLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKS 484 (581)
Q Consensus 406 ~g~~~~~~~~~~~~~l~~all~RFdli~~-~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (581)
-. .....-.+.+.|+.|+...-+ +|+..+...|..
T Consensus 522 l~------~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~-------------------------------------- 557 (686)
T PRK15429 522 LK------KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP-------------------------------------- 557 (686)
T ss_pred HH------HHHHcCcccHHHHhccCeeEEeCCChhhhHhHHH--------------------------------------
Confidence 10 111122377889988866444 333333222221
Q ss_pred cchhhhhccCCCCCCCCCCCCHHHHHHHHH-HHHhcC--CCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHH
Q 040742 485 GSLVSKLRLDPKKDGDFHPLPAPLLRKYIA-YARTFV--FPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVR 561 (581)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~-~ar~~i--~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslir 561 (581)
.+++.|+. ++++.- .+.+++++.+.|..| .+|-++|+|+.+++
T Consensus 558 ----------------------~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y------------~WPGNvrEL~~~i~ 603 (686)
T PRK15429 558 ----------------------LLVKAFTFKIARRMGRNIDSIPAETLRTLSNM------------EWPGNVRELENVIE 603 (686)
T ss_pred ----------------------HHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC------------CCCCcHHHHHHHHH
Confidence 11233332 233211 235899999999875 46889999999999
Q ss_pred HHHHHHh
Q 040742 562 LAEARAR 568 (581)
Q Consensus 562 la~a~A~ 568 (581)
-+-..+.
T Consensus 604 ~a~~~~~ 610 (686)
T PRK15429 604 RAVLLTR 610 (686)
T ss_pred HHHHhCC
Confidence 8776543
No 75
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.29 E-value=2.9e-11 Score=123.34 Aligned_cols=98 Identities=19% Similarity=0.188 Sum_probs=73.8
Q ss_pred cceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCC-CCCCCccChhhhcCCCh
Q 040742 346 AGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVG-GHYNRAKTVNENLKMSA 423 (581)
Q Consensus 346 ~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~-g~~~~~~~~~~~~~l~~ 423 (581)
.|.+..|++||+-++|+.+++.+.+ .|+.+++++.+.+. +.....+.+..|||++|+.+ ..+ .+.+..+
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia~sNe~e~~~~-------~~~k~~e 299 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNESEWQRF-------KSNKKNE 299 (361)
T ss_pred cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEEeCCHHHHhhh-------hccccch
Confidence 4889999999999999999999988 99999999999886 44446677789999999972 111 1122569
Q ss_pred hhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 424 ALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 424 all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
||+|||.. +.++-..+-..+.+|-+..+.
T Consensus 300 af~dR~~~-i~vpY~l~~~~E~~Iy~k~~~ 328 (361)
T smart00763 300 ALLDRIIK-VKVPYCLRVSEEAQIYEKLLR 328 (361)
T ss_pred hhhhceEE-EeCCCcCCHHHHHHHHHHHhc
Confidence 99999964 333444555666677666665
No 76
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.29 E-value=7.3e-11 Score=127.69 Aligned_cols=206 Identities=22% Similarity=0.268 Sum_probs=130.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC---cEE-EecCCCccCCceeEEEec----CccccceeccceeeecCceEEEEcC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR---GIY-VCGNATTKAGLTVAVVKD----SVTNDYAFEAGAMVLADSGLCCIDE 361 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~---~~~-~~~~~~~~~~l~~~~~~~----~~~~~~~~~~g~l~~a~~gil~iDE 361 (581)
.++++.|++||||+++|++++...++ .+. ++...... .+..+.... ..+|......|.+..|++|++||||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEec
Confidence 38999999999999999999988753 222 33333211 111111111 1123333457888899999999999
Q ss_pred CCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEE-cCCCC
Q 040742 362 FDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFI-LLDKP 439 (581)
Q Consensus 362 i~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~-~~d~~ 439 (581)
++.++...| .|+.+++++.+... |.....+.++.+|+|++.... ...+.-.+.+.|+.|+....+ +|+..
T Consensus 242 i~~l~~~~q~~l~~~l~~~~~~~~--~~~~~~~~~~rii~~~~~~l~------~~~~~~~~~~~L~~~l~~~~i~lPpLr 313 (445)
T TIGR02915 242 IGDLPLNLQAKLLRFLQERVIERL--GGREEIPVDVRIVCATNQDLK------RMIAEGTFREDLFYRIAEISITIPPLR 313 (445)
T ss_pred hhhCCHHHHHHHHHHHhhCeEEeC--CCCceeeeceEEEEecCCCHH------HHHHcCCccHHHHHHhccceecCCCch
Confidence 999999998 99999999887654 444566778999999997510 011111267788888864333 33333
Q ss_pred CHHHHHH-HHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHh
Q 040742 440 DELLDKR-VSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYART 518 (581)
Q Consensus 440 ~~~~d~~-i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~ 518 (581)
+...|.. ++.| ++++| ++.
T Consensus 314 ~R~~Di~~l~~~---------------------------------------------------------~l~~~---~~~ 333 (445)
T TIGR02915 314 SRDGDAVLLANA---------------------------------------------------------FLERF---ARE 333 (445)
T ss_pred hchhhHHHHHHH---------------------------------------------------------HHHHH---HHH
Confidence 3322221 1111 23332 222
Q ss_pred cC--CCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCccc
Q 040742 519 FV--FPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAED 579 (581)
Q Consensus 519 ~i--~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~D 579 (581)
.- .+.+++++.+.|..| .+|-++|+|+.+++-|...|. ...++.+|
T Consensus 334 ~~~~~~~~~~~a~~~L~~~------------~wpgNvreL~~~i~~a~~~~~---~~~i~~~~ 381 (445)
T TIGR02915 334 LKRKTKGFTDDALRALEAH------------AWPGNVRELENKVKRAVIMAE---GNQITAED 381 (445)
T ss_pred hCCCCCCCCHHHHHHHHhC------------CCCChHHHHHHHHHHHHHhCC---CCcccHHH
Confidence 11 246999999999875 468899999999998776544 23454444
No 77
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.29 E-value=7.4e-11 Score=122.09 Aligned_cols=72 Identities=21% Similarity=0.339 Sum_probs=51.6
Q ss_pred HHHHHhhCccccccHHHHHHHHHHHhcCccccc-CCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 246 RQIVQSICPSIYGHELVKAGITLALFGGVRKHS-MYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 246 ~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~-~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
..+.+.+...|+||+.+|+++..++..+..... ....+.... ..|+||+||||+|||+||+.+++.+...++
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~-~~~ILliGp~G~GKT~LAr~LAk~l~~~fi 79 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVT-PKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccC-CceEEEECCCCCCHHHHHHHHHHHhCChhe
Confidence 456777778899999999999999976422110 011110011 149999999999999999999999876544
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=4.4e-11 Score=128.50 Aligned_cols=145 Identities=21% Similarity=0.170 Sum_probs=85.0
Q ss_pred HHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEecC-----
Q 040742 248 IVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGN----- 322 (581)
Q Consensus 248 l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~----- 322 (581)
+...-..+|+||+.+++.+...+..+... .++||+||||||||++|+.+++.+...-...+.
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~~~l~-------------~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKNSIS-------------HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCC-------------eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 33344467999999988888777766310 148999999999999999999987531100000
Q ss_pred -------CCccCCceeEEEecCc--ccc--c--eec-cc-eeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeC
Q 040742 323 -------ATTKAGLTVAVVKDSV--TND--Y--AFE-AG-AMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKA 386 (581)
Q Consensus 323 -------~~~~~~l~~~~~~~~~--~~~--~--~~~-~g-~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~ 386 (581)
..+..+.. ..++. .|. . ... .. .-..++..+++|||++.+..+.+ .|+..|++.
T Consensus 75 ~~c~~i~~g~~~dv~---el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p------- 144 (472)
T PRK14962 75 RACRSIDEGTFMDVI---ELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP------- 144 (472)
T ss_pred HHHHHHhcCCCCccE---EEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC-------
Confidence 00000110 01110 010 0 000 00 01234567999999999988776 899988851
Q ss_pred CeeEeeCCCeE-EEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcC
Q 040742 387 GLVASLSARTS-VLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILL 436 (581)
Q Consensus 387 g~~~~~~~~~~-viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~ 436 (581)
+..+. +++|+||.. +.+++.+|+. ++.+.
T Consensus 145 ------~~~vv~Ilattn~~k--------------l~~~L~SR~~-vv~f~ 174 (472)
T PRK14962 145 ------PSHVVFVLATTNLEK--------------VPPTIISRCQ-VIEFR 174 (472)
T ss_pred ------CCcEEEEEEeCChHh--------------hhHHHhcCcE-EEEEC
Confidence 12233 345555531 7899999994 34433
No 79
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.28 E-value=1.9e-11 Score=128.60 Aligned_cols=167 Identities=23% Similarity=0.272 Sum_probs=92.2
Q ss_pred ccccccHHHHHHHHHHHhcCcc-cccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 254 PSIYGHELVKAGITLALFGGVR-KHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~-~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
.+|.|.+.+|+.+...+.-... ..... .+.+...-++||+||||||||++++++|+.+...++ +.+... ..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~--~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l-----~~ 217 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYE--QIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF-----VQ 217 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHH--hcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH-----HH
Confidence 3577888888776554421100 00000 000112237999999999999999999998876554 333211 00
Q ss_pred EEEecCccccceec-cc-eeeecCceEEEEcCCCCCCH-----------HHH-HHHHHHHccEEEEeeCCeeEeeCCCeE
Q 040742 332 AVVKDSVTNDYAFE-AG-AMVLADSGLCCIDEFDKMSA-----------EHQ-ALLEAMEQQCVSVAKAGLVASLSARTS 397 (581)
Q Consensus 332 ~~~~~~~~~~~~~~-~g-~l~~a~~gil~iDEi~~~~~-----------~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~ 397 (581)
....+ +...+. .- ........|+||||+|.+.. ..+ .+.+.+..-. |. ....++.
T Consensus 218 k~~ge---~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld------~~--~~~~~v~ 286 (398)
T PTZ00454 218 KYLGE---GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD------GF--DQTTNVK 286 (398)
T ss_pred Hhcch---hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh------cc--CCCCCEE
Confidence 00000 000000 00 00012357999999987631 123 3444443210 11 1123577
Q ss_pred EEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 398 VLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 398 viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
||+|+|.+. . +++++++ |||..+. .+.|+.+....|.+.++
T Consensus 287 VI~aTN~~d---~----------LDpAllR~GRfd~~I~-~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 287 VIMATNRAD---T----------LDPALLRPGRLDRKIE-FPLPDRRQKRLIFQTIT 329 (398)
T ss_pred EEEecCCch---h----------CCHHHcCCCcccEEEE-eCCcCHHHHHHHHHHHH
Confidence 899999753 1 8999997 9998664 57888887777654443
No 80
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.27 E-value=4.3e-11 Score=125.29 Aligned_cols=161 Identities=15% Similarity=0.157 Sum_probs=101.8
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCc-----EE-E-ecCCCc
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRG-----IY-V-CGNATT 325 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~-----~~-~-~~~~~~ 325 (581)
..++++.+.....++.+|..+. |++|+|+||||||++|+.++..+... +. + -....+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~----------------~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKK----------------NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCC----------------CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 3456777777788877777653 89999999999999999999887431 11 1 111222
Q ss_pred cCCceeEEEecCccccceecccee----ee-----cCceEEEEcCCCCCCHHH-H-HHHHHHHcc------EEEEe--e-
Q 040742 326 KAGLTVAVVKDSVTNDYAFEAGAM----VL-----ADSGLCCIDEFDKMSAEH-Q-ALLEAMEQQ------CVSVA--K- 385 (581)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~g~l----~~-----a~~gil~iDEi~~~~~~~-~-~L~~~me~~------~i~i~--k- 385 (581)
..++..... +....+...+|.+ .. ..+.+++|||+|+...+. . .++.+||.+ .+.+. .
T Consensus 238 YeDFI~G~r--P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~ 315 (459)
T PRK11331 238 YEDFIQGYR--PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSEN 315 (459)
T ss_pred HHHHhcccC--CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccc
Confidence 222221111 1112344444532 11 135799999999999654 4 678888853 12221 1
Q ss_pred CCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCC
Q 040742 386 AGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPD 440 (581)
Q Consensus 386 ~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~ 440 (581)
.+.....|.++.||||||.... ++. -++.||++||..+-+.+++..
T Consensus 316 d~e~f~iP~Nl~IIgTMNt~Dr------s~~---~lD~AlrRRF~fi~i~p~~~~ 361 (459)
T PRK11331 316 DEERFYVPENVYIIGLMNTADR------SLA---VVDYALRRRFSFIDIEPGFDT 361 (459)
T ss_pred ccccccCCCCeEEEEecCcccc------chh---hccHHHHhhhheEEecCCCCh
Confidence 1234678999999999998631 111 289999999988777666543
No 81
>CHL00176 ftsH cell division protein; Validated
Probab=99.26 E-value=3e-11 Score=133.89 Aligned_cols=168 Identities=24% Similarity=0.269 Sum_probs=92.5
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCcc--CCce
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTK--AGLT 330 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~--~~l~ 330 (581)
.+|.|.+.+|+.+...+.--..... ...+..+-..++||+||||||||++|+++|..+...++ +++..... .+..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~--~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~ 260 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPER--FTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVG 260 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHH--HhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhh
Confidence 4588998888776543211100000 00000111237999999999999999999998866554 33322100 0000
Q ss_pred eEEEecCccccceeccceeeecCceEEEEcCCCCCCH-----------HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEE
Q 040742 331 VAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSA-----------EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSV 398 (581)
Q Consensus 331 ~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~-----------~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~v 398 (581)
.... ..- +.. .......|+||||+|.+.. ..+ .|.+.+..-. |. .-+.++.|
T Consensus 261 ~~~v----r~l--F~~--A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~d------g~--~~~~~ViV 324 (638)
T CHL00176 261 AARV----RDL--FKK--AKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMD------GF--KGNKGVIV 324 (638)
T ss_pred HHHH----HHH--HHH--HhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhc------cc--cCCCCeeE
Confidence 0000 000 000 0011356999999998732 122 4444443210 11 12346789
Q ss_pred EEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 399 LAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 399 iaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
|||+|.... ++++|++ |||..+. .+.|+.+....|.+..+.
T Consensus 325 IaaTN~~~~-------------LD~ALlRpGRFd~~I~-v~lPd~~~R~~IL~~~l~ 367 (638)
T CHL00176 325 IAATNRVDI-------------LDAALLRPGRFDRQIT-VSLPDREGRLDILKVHAR 367 (638)
T ss_pred EEecCchHh-------------hhhhhhccccCceEEE-ECCCCHHHHHHHHHHHHh
Confidence 999998631 7889986 8998655 577888777777554443
No 82
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.25 E-value=5.2e-11 Score=123.17 Aligned_cols=71 Identities=21% Similarity=0.364 Sum_probs=51.1
Q ss_pred HHHHhhCccccccHHHHHHHHHHHhcCcccccC-CCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 247 QIVQSICPSIYGHELVKAGITLALFGGVRKHSM-YQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 247 ~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~-~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
.|.+.+...|+||+.+|+++..++..+..+... ...+-... .-|+||+||||+|||++++++++.+...++
T Consensus 5 ~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~-p~~ILLiGppG~GKT~lAraLA~~l~~~fi 76 (441)
T TIGR00390 5 EIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVT-PKNILMIGPTGVGKTEIARRLAKLANAPFI 76 (441)
T ss_pred HHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccC-CceEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 356667778999999999999999976332110 00000011 148999999999999999999999876554
No 83
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.25 E-value=1.1e-10 Score=133.18 Aligned_cols=210 Identities=15% Similarity=0.226 Sum_probs=126.4
Q ss_pred hHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC---------
Q 040742 243 DIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS--------- 313 (581)
Q Consensus 243 ~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~--------- 313 (581)
++-+.....-...++|++.....++..|..... -|+||+||||||||++++.+++.+
T Consensus 171 ~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~--------------~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l 236 (731)
T TIGR02639 171 DLTEKAKNGKIDPLIGREDELERTIQVLCRRKK--------------NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENL 236 (731)
T ss_pred hHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCC--------------CceEEECCCCCCHHHHHHHHHHHHHhCCCchhh
Confidence 344444444455689999988877755554421 289999999999999999999875
Q ss_pred -CCcEEEecCCCccCCceeEEEecCccccceeccceee----ecCceEEEEcCCCCCCH---------HHH-HHHHHHHc
Q 040742 314 -PRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMV----LADSGLCCIDEFDKMSA---------EHQ-ALLEAMEQ 378 (581)
Q Consensus 314 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~----~a~~gil~iDEi~~~~~---------~~~-~L~~~me~ 378 (581)
...++... ...+.+... ..|+|.-.-..+. ...+.|+||||++.+.. +.+ .|...|+.
T Consensus 237 ~~~~~~~~~----~~~l~a~~~---~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~ 309 (731)
T TIGR02639 237 KNAKIYSLD----MGSLLAGTK---YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS 309 (731)
T ss_pred cCCeEEEec----HHHHhhhcc---ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC
Confidence 12222110 011111100 0122211111111 12357999999997742 223 45566654
Q ss_pred cEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCC
Q 040742 379 QCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGY 458 (581)
Q Consensus 379 ~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~ 458 (581)
| .+.+|+|||+.+ |. ..+..+++|.+||..+ ....|+.+....|.+.+...+...
T Consensus 310 g---------------~i~~IgaTt~~e--~~------~~~~~d~al~rRf~~i--~v~~p~~~~~~~il~~~~~~~e~~ 364 (731)
T TIGR02639 310 G---------------KLRCIGSTTYEE--YK------NHFEKDRALSRRFQKI--DVGEPSIEETVKILKGLKEKYEEF 364 (731)
T ss_pred C---------------CeEEEEecCHHH--HH------HHhhhhHHHHHhCceE--EeCCCCHHHHHHHHHHHHHHHHhc
Confidence 3 355789999742 11 2233789999999754 346778888777777666543221
Q ss_pred CCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCc-CCHHHHHHHHHHHH
Q 040742 459 QEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPR-MTKPAAEILQKFYL 537 (581)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~-ls~~a~~~i~~~y~ 537 (581)
+ ...++.+.+...+.++.+++... +++.|.+++.....
T Consensus 365 ~-----------------------------------------~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a 403 (731)
T TIGR02639 365 H-----------------------------------------HVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGA 403 (731)
T ss_pred c-----------------------------------------CcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhh
Confidence 1 12366777888888888876554 68888888877654
Q ss_pred HH
Q 040742 538 KL 539 (581)
Q Consensus 538 ~l 539 (581)
..
T Consensus 404 ~~ 405 (731)
T TIGR02639 404 SF 405 (731)
T ss_pred hh
Confidence 33
No 84
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.24 E-value=1.2e-11 Score=115.07 Aligned_cols=137 Identities=17% Similarity=0.243 Sum_probs=85.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC----cE-EEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR----GI-YVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDK 364 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~----~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~ 364 (581)
.++||+||+|+|||.+++++++.+.. .+ .++....+..+-.... ........+|..-.+++||+|+|||||
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~----~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESS----VSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCH----CHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhh----hhhhhhcccceeeccchhhhhhHHHhh
Confidence 48999999999999999999999872 22 2433332220000000 001111223334445678999999999
Q ss_pred CCH-----------HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCC--------ccC----hhh--h
Q 040742 365 MSA-----------EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNR--------AKT----VNE--N 418 (581)
Q Consensus 365 ~~~-----------~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~--------~~~----~~~--~ 418 (581)
+.+ ..+ .|+++||.++++... |..... .++.+|+|+|-....... ... ... .
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~-g~~vd~-~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSY-GRTVDT-SNIIFIMTSNFGAEEIIDASRSGEAIEQEQEEQIRDLVE 157 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETT-CCEEEG-TTEEEEEEESSSTHHHHHCHHHCTCCHHHHCHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceeccc-ceEEEe-CCceEEEecccccchhhhhhccccccHHHHHHHHHHHHH
Confidence 999 888 999999999998643 444443 468999999975211000 000 111 1
Q ss_pred cCCChhhhccccEe
Q 040742 419 LKMSAALLSRFDLV 432 (581)
Q Consensus 419 ~~l~~all~RFdli 432 (581)
-.+.+.|+.|||.|
T Consensus 158 ~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 158 YGFRPEFLGRIDVI 171 (171)
T ss_dssp HTS-HHHHTTSSEE
T ss_pred cCCCHHHHccCCcC
Confidence 25899999999874
No 85
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.24 E-value=1.4e-10 Score=125.85 Aligned_cols=136 Identities=21% Similarity=0.274 Sum_probs=91.2
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC---cEE-EecCCCccCCceeEEE----ecCccccceeccceeeecCceEEEEcC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR---GIY-VCGNATTKAGLTVAVV----KDSVTNDYAFEAGAMVLADSGLCCIDE 361 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~---~~~-~~~~~~~~~~l~~~~~----~~~~~~~~~~~~g~l~~a~~gil~iDE 361 (581)
.++|+.|++||||+++|++++..+++ .+. ++...... .+..... ....+|......|.+..|++|++||||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~ 245 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDE 245 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEec
Confidence 38999999999999999999987653 222 33332211 1111111 111123334457888899999999999
Q ss_pred CCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEE
Q 040742 362 FDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFI 434 (581)
Q Consensus 362 i~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~ 434 (581)
++.++...| .|+.+++++.+... |.....+.++.+|+|+|.... .+.+.-.+.+.|+.|+..+.+
T Consensus 246 i~~l~~~~q~~L~~~l~~~~~~~~--~~~~~~~~~~rii~~t~~~l~------~~~~~g~~~~~l~~~l~~~~i 311 (457)
T PRK11361 246 IGEMPLVLQAKLLRILQEREFERI--GGHQTIKVDIRIIAATNRDLQ------AMVKEGTFREDLFYRLNVIHL 311 (457)
T ss_pred hhhCCHHHHHHHHHHHhcCcEEeC--CCCceeeeceEEEEeCCCCHH------HHHHcCCchHHHHHHhcccee
Confidence 999999998 99999999876643 555566778999999997510 111112266788888855333
No 86
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.24 E-value=3.1e-10 Score=130.77 Aligned_cols=220 Identities=14% Similarity=0.151 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHHHHh--------hcCchHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEe
Q 040742 224 SFSPRDLEFIVKFSE--------ESGSDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVV 295 (581)
Q Consensus 224 ~~~~~~~~~i~~~~~--------~~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~ 295 (581)
.++.++++.+..-|. ....+.+..+.+.+...|+|++.+...+..++....... .+. .+.-.++||+
T Consensus 530 ~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl-~~~----~~p~~~~Lf~ 604 (857)
T PRK10865 530 KVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGL-SDP----NRPIGSFLFL 604 (857)
T ss_pred ccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcc-cCC----CCCCceEEEE
Confidence 467777776655442 111334567888999999999999888877765321000 000 1111279999
Q ss_pred CCCCChHHHHHHHHHHHCCC---cE-EEecCCCcc----CCceeEEE-e-cCccccceeccceeeecCceEEEEcCCCCC
Q 040742 296 GDPGLGKSQLLQAAAAVSPR---GI-YVCGNATTK----AGLTVAVV-K-DSVTNDYAFEAGAMVLADSGLCCIDEFDKM 365 (581)
Q Consensus 296 G~pGtGKT~la~~la~~~~~---~~-~~~~~~~~~----~~l~~~~~-~-~~~~~~~~~~~g~l~~a~~gil~iDEi~~~ 365 (581)
||||||||++|+++++.+.. .+ ++....... ..+.++.. . ....+.+ -.+.+.....++++|||++++
T Consensus 605 Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~--l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 605 GPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY--LTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHH--HHHHHHhCCCCeEEEeehhhC
Confidence 99999999999999998742 12 222211110 00111000 0 0000000 011112224589999999999
Q ss_pred CHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCC----CCCc--cChhh------hcCCChhhhccccEe
Q 040742 366 SAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGH----YNRA--KTVNE------NLKMSAALLSRFDLV 432 (581)
Q Consensus 366 ~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~----~~~~--~~~~~------~~~l~~all~RFdli 432 (581)
+++.+ .|+++|++|.++.. .|....+. ++.+|+|+|..... +... ..+.+ .-.+.++|++|+|.+
T Consensus 683 ~~~v~~~Ll~ile~g~l~d~-~gr~vd~r-n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~i 760 (857)
T PRK10865 683 HPDVFNILLQVLDDGRLTDG-QGRTVDFR-NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEV 760 (857)
T ss_pred CHHHHHHHHHHHhhCceecC-CceEEeec-ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCee
Confidence 99988 89999999988743 23434332 46789999974211 1110 00111 114889999999987
Q ss_pred EEcCCCCCHHHHHHHHHHHHh
Q 040742 433 FILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 433 ~~~~d~~~~~~d~~i~~~il~ 453 (581)
+++.+ ++.+....|+.+.+.
T Consensus 761 ivF~P-L~~edl~~Iv~~~L~ 780 (857)
T PRK10865 761 VVFHP-LGEQHIASIAQIQLQ 780 (857)
T ss_pred EecCC-CCHHHHHHHHHHHHH
Confidence 77655 444445555554443
No 87
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2e-11 Score=130.04 Aligned_cols=163 Identities=25% Similarity=0.252 Sum_probs=98.0
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeE
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVA 332 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~ 332 (581)
.+|-|+|.+|+.+-.++.-.... .....++.+...-.|||+||||||||++|+++|..+...+. +.|.. |...
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~-pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpE-----L~sk 507 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKH-PEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPE-----LFSK 507 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhc-hHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHH-----HHHH
Confidence 45678999999988665422110 00011111222236999999999999999999999876654 44432 2211
Q ss_pred EEecCccccceeccceeeecCceEEEEcCCCCCCHHH-------H-----HHHHHHHccEEEEeeCCeeEeeCCCeEEEE
Q 040742 333 VVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEH-------Q-----ALLEAMEQQCVSVAKAGLVASLSARTSVLA 400 (581)
Q Consensus 333 ~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~-------~-----~L~~~me~~~i~i~k~g~~~~~~~~~~via 400 (581)
++-+....-...-..+- .+...|+|+||||.+.... + .|+..|+ |... ..++.|||
T Consensus 508 ~vGeSEr~ir~iF~kAR-~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmD---------G~e~--~k~V~ViA 575 (693)
T KOG0730|consen 508 YVGESERAIREVFRKAR-QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMD---------GLEA--LKNVLVIA 575 (693)
T ss_pred hcCchHHHHHHHHHHHh-hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcc---------cccc--cCcEEEEe
Confidence 22111100000000111 1124899999999876442 1 3444443 3322 24689999
Q ss_pred eeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHH
Q 040742 401 AANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVS 448 (581)
Q Consensus 401 a~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~ 448 (581)
|+|.+. .|++||++ |||-++ ..+.||.+....|.
T Consensus 576 ATNRpd-------------~ID~ALlRPGRlD~ii-yVplPD~~aR~~Il 611 (693)
T KOG0730|consen 576 ATNRPD-------------MIDPALLRPGRLDRII-YVPLPDLEARLEIL 611 (693)
T ss_pred ccCChh-------------hcCHHHcCCcccceeE-eecCccHHHHHHHH
Confidence 999873 19999999 999855 46889998888773
No 88
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.24 E-value=2.4e-11 Score=127.71 Aligned_cols=161 Identities=24% Similarity=0.280 Sum_probs=88.2
Q ss_pred cccccHHHHHHHHHHHhcCccc-ccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeE
Q 040742 255 SIYGHELVKAGITLALFGGVRK-HSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVA 332 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g~~~-~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~ 332 (581)
+|.|.+..++.+...+...... .... .+.+....++||+||||||||++|+++++.+...++ +.+.. +...
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~--~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~-----l~~~ 195 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFE--EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE-----LVRK 195 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHH--hcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHH-----HHHH
Confidence 4677777777665554321100 0000 001111236999999999999999999998876554 22111 1100
Q ss_pred EEecCccccceeccceeee---cCceEEEEcCCCCCC-----------HHHH-HHHHHHHccEEEEeeCCeeEeeCCCeE
Q 040742 333 VVKDSVTNDYAFEAGAMVL---ADSGLCCIDEFDKMS-----------AEHQ-ALLEAMEQQCVSVAKAGLVASLSARTS 397 (581)
Q Consensus 333 ~~~~~~~~~~~~~~g~l~~---a~~gil~iDEi~~~~-----------~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~ 397 (581)
.... +.... ...+.. ...+|+||||+|.+. ...+ .+.+.+..-. +. ....++.
T Consensus 196 ~~g~---~~~~i-~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~ 263 (364)
T TIGR01242 196 YIGE---GARLV-REIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD------GF--DPRGNVK 263 (364)
T ss_pred hhhH---HHHHH-HHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh------CC--CCCCCEE
Confidence 0000 00000 000111 134799999999873 2223 4555553310 11 1123578
Q ss_pred EEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHH
Q 040742 398 VLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVS 448 (581)
Q Consensus 398 viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~ 448 (581)
||+|+|... . +++++++ |||.++ ..+.|+.+....|.
T Consensus 264 vI~ttn~~~---~----------ld~al~r~grfd~~i-~v~~P~~~~r~~Il 302 (364)
T TIGR01242 264 VIAATNRPD---I----------LDPALLRPGRFDRII-EVPLPDFEGRLEIL 302 (364)
T ss_pred EEEecCChh---h----------CChhhcCcccCceEE-EeCCcCHHHHHHHH
Confidence 999999763 1 8889986 999854 45677777766663
No 89
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5e-12 Score=126.47 Aligned_cols=173 Identities=24% Similarity=0.264 Sum_probs=107.3
Q ss_pred ccccccHHHHHHHHHHHhcC-cccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 254 PSIYGHELVKAGITLALFGG-VRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g-~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
.+|-|.+.+|.++...++-. ....+... +-..+...+|||+||||||||.+|+++|+.++..+. +.+.. ++.
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~-g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~-----lt~ 165 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAK-GKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN-----LTS 165 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcc-cccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc-----cch
Confidence 35678888888876543311 11111111 111334457999999999999999999999876543 33322 222
Q ss_pred EEEecCccccceecccee-----eec---CceEEEEcCCCCCCHHHH-HHHHHHHc--cEEEEeeCCeeEeeCCCeEEEE
Q 040742 332 AVVKDSVTNDYAFEAGAM-----VLA---DSGLCCIDEFDKMSAEHQ-ALLEAMEQ--QCVSVAKAGLVASLSARTSVLA 400 (581)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l-----~~a---~~gil~iDEi~~~~~~~~-~L~~~me~--~~i~i~k~g~~~~~~~~~~via 400 (581)
+|.-++-.+ .+| .+.|+||||+|.+....+ .=||+|.. ..+-..-.|....-..++.|+|
T Consensus 166 ---------KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737|consen 166 ---------KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred ---------hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 221111111 122 368999999998764333 33444321 1111123366666667899999
Q ss_pred eeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhc
Q 040742 401 AANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLH 455 (581)
Q Consensus 401 a~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~ 455 (581)
|+|.+ ++ +++|+++|+.- .++.+.|+.+...+|.+-++...
T Consensus 237 ATNRP---~D----------lDeAiiRR~p~-rf~V~lP~~~qR~kILkviLk~e 277 (386)
T KOG0737|consen 237 ATNRP---FD----------LDEAIIRRLPR-RFHVGLPDAEQRRKILKVILKKE 277 (386)
T ss_pred CCCCC---cc----------HHHHHHHhCcc-eeeeCCCchhhHHHHHHHHhccc
Confidence 99987 33 99999999966 44578999999999988887643
No 90
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.22 E-value=3e-10 Score=123.61 Aligned_cols=206 Identities=25% Similarity=0.298 Sum_probs=130.2
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC---cEE-EecCCCccCCceeEEE----ecCccccceeccceeeecCceEEEEcC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR---GIY-VCGNATTKAGLTVAVV----KDSVTNDYAFEAGAMVLADSGLCCIDE 361 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~---~~~-~~~~~~~~~~l~~~~~----~~~~~~~~~~~~g~l~~a~~gil~iDE 361 (581)
.++++.|++||||++++++++...++ .++ ++...... .+..+.. +....+......|.+..+++|++||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-DLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-HHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 48999999999999999999998764 222 33332211 1111111 111122223346778889999999999
Q ss_pred CCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccE-eEEcCCCC
Q 040742 362 FDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDL-VFILLDKP 439 (581)
Q Consensus 362 i~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdl-i~~~~d~~ 439 (581)
++.++.+.| .|+++++++.+... |.....+.++.+|+|+|.... .....-.+.+.|+.|+.. .+.+|+..
T Consensus 237 i~~l~~~~q~~ll~~l~~~~~~~~--~~~~~~~~~~rii~~~~~~l~------~~~~~~~f~~~L~~rl~~~~i~lPpLr 308 (463)
T TIGR01818 237 IGDMPLDAQTRLLRVLADGEFYRV--GGRTPIKVDVRIVAATHQNLE------ALVRQGKFREDLFHRLNVIRIHLPPLR 308 (463)
T ss_pred hhhCCHHHHHHHHHHHhcCcEEEC--CCCceeeeeeEEEEeCCCCHH------HHHHcCCcHHHHHHHhCcceecCCCcc
Confidence 999999998 99999999887654 444455667889999987510 011111266789999875 34444444
Q ss_pred CHHHHH-HHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHh
Q 040742 440 DELLDK-RVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYART 518 (581)
Q Consensus 440 ~~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~ 518 (581)
+...|. .++.|. ++++ ++.
T Consensus 309 ~R~~Di~~l~~~~---------------------------------------------------------l~~~---~~~ 328 (463)
T TIGR01818 309 ERREDIPRLARHF---------------------------------------------------------LALA---ARE 328 (463)
T ss_pred cchhhHHHHHHHH---------------------------------------------------------HHHH---HHH
Confidence 333222 222222 2222 221
Q ss_pred c-C-CCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCccc
Q 040742 519 F-V-FPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAED 579 (581)
Q Consensus 519 ~-i-~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~D 579 (581)
. . .+.+++++.+.|..| .+|-++|+|+.+++-+...|. ...++.+|
T Consensus 329 ~~~~~~~~~~~a~~~L~~~------------~wpgNvreL~~~~~~~~~~~~---~~~i~~~~ 376 (463)
T TIGR01818 329 LDVEPKLLDPEALERLKQL------------RWPGNVRQLENLCRWLTVMAS---GDEVLVSD 376 (463)
T ss_pred hCCCCCCcCHHHHHHHHhC------------CCCChHHHHHHHHHHHHHhCC---CCcccHHh
Confidence 1 1 246999999999875 468899999999998776654 23444444
No 91
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.9e-11 Score=118.32 Aligned_cols=168 Identities=23% Similarity=0.333 Sum_probs=99.7
Q ss_pred ccccccHHHHHHHHHHHhcCcc-cccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeE
Q 040742 254 PSIYGHELVKAGITLALFGGVR-KHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVA 332 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~-~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~ 332 (581)
.+|.|.|.+|.||..+++-... ..+..+++.+.|| +||+||||||||.||+++|..+...++ +- +..+|...
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pwrg---iLLyGPPGTGKSYLAKAVATEAnSTFF-Sv---SSSDLvSK 205 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRG---ILLYGPPGTGKSYLAKAVATEANSTFF-SV---SSSDLVSK 205 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCccee---EEEeCCCCCcHHHHHHHHHhhcCCceE-Ee---ehHHHHHH
Confidence 5678999999998776432211 1111223334455 999999999999999999999884443 22 22334332
Q ss_pred EEecCccccceeccceeeec---CceEEEEcCCCCCCHHH-----------H-HHHHHHHccEEEEeeCCeeEeeCCCeE
Q 040742 333 VVKDSVTNDYAFEAGAMVLA---DSGLCCIDEFDKMSAEH-----------Q-ALLEAMEQQCVSVAKAGLVASLSARTS 397 (581)
Q Consensus 333 ~~~~~~~~~~~~~~g~l~~a---~~gil~iDEi~~~~~~~-----------~-~L~~~me~~~i~i~k~g~~~~~~~~~~ 397 (581)
+..+.. . +....+.+| ...|+||||||.+.... . .++--|. |... -+..+.
T Consensus 206 WmGESE--k--LVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq---------GVG~-d~~gvL 271 (439)
T KOG0739|consen 206 WMGESE--K--LVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ---------GVGN-DNDGVL 271 (439)
T ss_pred HhccHH--H--HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh---------cccc-CCCceE
Confidence 221110 0 111111122 35899999999875321 1 1222221 2211 144678
Q ss_pred EEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCC
Q 040742 398 VLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQE 460 (581)
Q Consensus 398 viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~ 460 (581)
|++|+|.++ . |+.|+.+||+- .+..+.|+..... +++..|.++..
T Consensus 272 VLgATNiPw---~----------LDsAIRRRFek-RIYIPLPe~~AR~----~MF~lhlG~tp 316 (439)
T KOG0739|consen 272 VLGATNIPW---V----------LDSAIRRRFEK-RIYIPLPEAHARA----RMFKLHLGDTP 316 (439)
T ss_pred EEecCCCch---h----------HHHHHHHHhhc-ceeccCCcHHHhh----hhheeccCCCc
Confidence 999999873 3 89999999975 5556777765544 45777776543
No 92
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.21 E-value=7.9e-11 Score=128.66 Aligned_cols=130 Identities=27% Similarity=0.387 Sum_probs=78.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCcc--CCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTK--AGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSA 367 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~--~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~ 367 (581)
++||+||||||||+++++++..+...++ +++..... .+...... ... +.. ......+|+||||+|.+..
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l----~~~--f~~--a~~~~p~Il~iDEid~l~~ 161 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRV----RDL--FEQ--AKKNAPCIIFIDEIDAVGR 161 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHH----HHH--HHH--HHhcCCCEEEEechhhhhh
Confidence 6999999999999999999998876654 33221100 00000000 000 000 0011357999999988743
Q ss_pred HH-----------H----HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--ccc
Q 040742 368 EH-----------Q----ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFD 430 (581)
Q Consensus 368 ~~-----------~----~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFd 430 (581)
.. . .|+..|+. . .-...+.||+|+|.+.. ++++|++ |||
T Consensus 162 ~r~~~~~~~~~~~~~~~~~lL~~~d~---------~--~~~~~v~vI~aTn~~~~-------------ld~al~r~gRfd 217 (495)
T TIGR01241 162 QRGAGLGGGNDEREQTLNQLLVEMDG---------F--GTNTGVIVIAATNRPDV-------------LDPALLRPGRFD 217 (495)
T ss_pred ccccCcCCccHHHHHHHHHHHhhhcc---------c--cCCCCeEEEEecCChhh-------------cCHHHhcCCcce
Confidence 21 1 22333321 1 11335789999998631 8899997 999
Q ss_pred EeEEcCCCCCHHHHHHHHHHHHh
Q 040742 431 LVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 431 li~~~~d~~~~~~d~~i~~~il~ 453 (581)
..+. .+.|+.+....|.+..+.
T Consensus 218 ~~i~-i~~Pd~~~R~~il~~~l~ 239 (495)
T TIGR01241 218 RQVV-VDLPDIKGREEILKVHAK 239 (495)
T ss_pred EEEE-cCCCCHHHHHHHHHHHHh
Confidence 8654 568888888877655543
No 93
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4.2e-11 Score=128.94 Aligned_cols=170 Identities=26% Similarity=0.304 Sum_probs=103.7
Q ss_pred cccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEE
Q 040742 255 SIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAV 333 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~ 333 (581)
+|-|.+.+|..|+-.+--.-.....-+.+.+.|+ .|||+||||||||.+|+++|..+.-.+. +.|... ..-.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRS--GILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL-----LNMY 745 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRS--GILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL-----LNMY 745 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccc--eeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH-----HHHH
Confidence 5669999999998765432111000112223344 8999999999999999999998765554 444332 1111
Q ss_pred EecCccc-cceeccceeeecCceEEEEcCCCCCCHHH-------------H-HHHHHHHccEEEEeeCCeeEeeCCCeEE
Q 040742 334 VKDSVTN-DYAFEAGAMVLADSGLCCIDEFDKMSAEH-------------Q-ALLEAMEQQCVSVAKAGLVASLSARTSV 398 (581)
Q Consensus 334 ~~~~~~~-~~~~~~g~l~~a~~gil~iDEi~~~~~~~-------------~-~L~~~me~~~i~i~k~g~~~~~~~~~~v 398 (581)
+...+.. +-+++. .-.|...|+|+||+|.+.+.. . .|+..|+ |+...-...+.|
T Consensus 746 VGqSE~NVR~VFer--AR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD---------gls~~~s~~VFV 814 (953)
T KOG0736|consen 746 VGQSEENVREVFER--ARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD---------GLSDSSSQDVFV 814 (953)
T ss_pred hcchHHHHHHHHHH--hhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh---------cccCCCCCceEE
Confidence 1111100 001110 112457899999999987641 1 3444443 444434557899
Q ss_pred EEeeCCCCCCCCCccChhhhcCCChhhh--ccccEeEEcCCCCCHHHHHHHHHHHHhhc
Q 040742 399 LAAANPVGGHYNRAKTVNENLKMSAALL--SRFDLVFILLDKPDELLDKRVSEHIMSLH 455 (581)
Q Consensus 399 iaa~Np~~g~~~~~~~~~~~~~l~~all--~RFdli~~~~d~~~~~~d~~i~~~il~~~ 455 (581)
|+|+|.+.- |++||+ -|||-.+.+-...+.+....+.+.+-+..
T Consensus 815 iGATNRPDL-------------LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkF 860 (953)
T KOG0736|consen 815 IGATNRPDL-------------LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKF 860 (953)
T ss_pred EecCCCccc-------------cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHc
Confidence 999998731 889999 59997666666666666666666655543
No 94
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=2.9e-10 Score=120.44 Aligned_cols=148 Identities=20% Similarity=0.249 Sum_probs=87.5
Q ss_pred HHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEE----EecC
Q 040742 248 IVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIY----VCGN 322 (581)
Q Consensus 248 l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~----~~~~ 322 (581)
+...-..+++||+.+.+.|..++..+.. .| +||+||||||||++|+.+|+.+...-. .++.
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~~ri--------------~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~ 77 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKSGKI--------------GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE 77 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHcCCC--------------CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC
Confidence 3333445789999999998888877631 14 899999999999999999998754210 1110
Q ss_pred CC--------ccCCceeEEEecCc--ccc---ceecccee---eecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEee
Q 040742 323 AT--------TKAGLTVAVVKDSV--TND---YAFEAGAM---VLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAK 385 (581)
Q Consensus 323 ~~--------~~~~l~~~~~~~~~--~~~---~~~~~g~l---~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k 385 (581)
-. ...++. ..+.. .|. ..+..... ......|++|||+++++.+.+ +|+..||+-
T Consensus 78 C~sC~~i~~g~~~dvi---EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP------ 148 (484)
T PRK14956 78 CTSCLEITKGISSDVL---EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP------ 148 (484)
T ss_pred CcHHHHHHccCCccce---eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC------
Confidence 00 000110 01110 000 00000000 111245999999999998877 999999752
Q ss_pred CCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCC
Q 040742 386 AGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKP 439 (581)
Q Consensus 386 ~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~ 439 (581)
+..+.+|.++|... ++.++++||+ ..|.+...+
T Consensus 149 -------p~~viFILaTte~~-------------kI~~TI~SRC-q~~~f~~ls 181 (484)
T PRK14956 149 -------PAHIVFILATTEFH-------------KIPETILSRC-QDFIFKKVP 181 (484)
T ss_pred -------CCceEEEeecCChh-------------hccHHHHhhh-heeeecCCC
Confidence 23345555554321 1889999998 445544444
No 95
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.19 E-value=6e-11 Score=125.67 Aligned_cols=162 Identities=25% Similarity=0.312 Sum_probs=88.4
Q ss_pred cccccHHHHHHHHHHHhcC-cccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeE
Q 040742 255 SIYGHELVKAGITLALFGG-VRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVA 332 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g-~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~ 332 (581)
+|.|.+..++.+...+.-. ....... .+.+....++||+||||||||++|+++|..+...++ +.+... ...
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~--~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL-----~~k 256 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYD--DIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL-----IQK 256 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHH--hcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh-----hhh
Confidence 4677777776665444211 0000000 001222237999999999999999999998876554 433221 111
Q ss_pred EEecCccccceeccceeeec---CceEEEEcCCCCCCH-----------HHH-HHHHHHHccEEEEeeCCeeEeeCCCeE
Q 040742 333 VVKDSVTNDYAFEAGAMVLA---DSGLCCIDEFDKMSA-----------EHQ-ALLEAMEQQCVSVAKAGLVASLSARTS 397 (581)
Q Consensus 333 ~~~~~~~~~~~~~~g~l~~a---~~gil~iDEi~~~~~-----------~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~ 397 (581)
.... +.. .....+..| ...|+||||+|.+.. +.+ .+++.+.+-. |.. -..++.
T Consensus 257 ~~Ge---~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld------g~~--~~~~V~ 324 (438)
T PTZ00361 257 YLGD---GPK-LVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD------GFD--SRGDVK 324 (438)
T ss_pred hcch---HHH-HHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh------hhc--ccCCeE
Confidence 0000 000 000001111 346999999987531 123 4444443210 111 123578
Q ss_pred EEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHH
Q 040742 398 VLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSE 449 (581)
Q Consensus 398 viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~ 449 (581)
||+|+|... .+++++++ |||..+. ++.|+.+....|..
T Consensus 325 VI~ATNr~d-------------~LDpaLlRpGRfd~~I~-~~~Pd~~~R~~Il~ 364 (438)
T PTZ00361 325 VIMATNRIE-------------SLDPALIRPGRIDRKIE-FPNPDEKTKRRIFE 364 (438)
T ss_pred EEEecCChH-------------HhhHHhccCCeeEEEEE-eCCCCHHHHHHHHH
Confidence 999999752 18899985 9998654 57888877776644
No 96
>PRK15115 response regulator GlrR; Provisional
Probab=99.18 E-value=5.7e-10 Score=120.71 Aligned_cols=136 Identities=22% Similarity=0.298 Sum_probs=91.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC---cEE-EecCCCccCCceeEE----EecCccccceeccceeeecCceEEEEcC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR---GIY-VCGNATTKAGLTVAV----VKDSVTNDYAFEAGAMVLADSGLCCIDE 361 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~---~~~-~~~~~~~~~~l~~~~----~~~~~~~~~~~~~g~l~~a~~gil~iDE 361 (581)
.++++.|++||||+.+|+++++..++ .+. ++...... .+.... .+...+|......|.+..+++|++||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 48999999999999999999998763 222 33322211 111111 1111233334567788899999999999
Q ss_pred CCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEE
Q 040742 362 FDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFI 434 (581)
Q Consensus 362 i~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~ 434 (581)
++.++...| .|+.+|+++.+... |.......++.+|+|++..- ......-.+.+.|+.|+....+
T Consensus 237 i~~l~~~~q~~L~~~l~~~~~~~~--g~~~~~~~~~rii~~~~~~l------~~~~~~~~f~~~l~~~l~~~~i 302 (444)
T PRK15115 237 IGDMPAPLQVKLLRVLQERKVRPL--GSNRDIDIDVRIISATHRDL------PKAMARGEFREDLYYRLNVVSL 302 (444)
T ss_pred cccCCHHHHHHHHHHHhhCCEEeC--CCCceeeeeEEEEEeCCCCH------HHHHHcCCccHHHHHhhceeee
Confidence 999999998 99999999887543 55555667899999998641 0011111367788888865444
No 97
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.18 E-value=3e-10 Score=112.69 Aligned_cols=209 Identities=20% Similarity=0.252 Sum_probs=134.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE--E--EecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI--Y--VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~--~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~ 366 (581)
++|+.|++||||-.+|++....+++.- | .+..+. +.+...+..+...-| -.-..|.+.+|++|.+++|||..|+
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l-Pe~~aEsElFG~apg-~~gk~GffE~AngGTVlLDeIgEmS 306 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL-PEDAAESELFGHAPG-DEGKKGFFEQANGGTVLLDEIGEMS 306 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC-chhHhHHHHhcCCCC-CCCccchhhhccCCeEEeehhhhcC
Confidence 799999999999999999999988732 2 221111 111111111100001 2235678899999999999999999
Q ss_pred HHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHH
Q 040742 367 AEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDK 445 (581)
Q Consensus 367 ~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~ 445 (581)
+..| .|+..+.+|++... |.......++.||+|+.-.- ..+.+.-.+.+.|+-|..+.-+-.+ |-.+.-
T Consensus 307 p~lQaKLLRFL~DGtFRRV--Gee~Ev~vdVRVIcatq~nL------~~lv~~g~fReDLfyRLNVLtl~~P-pLRer~- 376 (511)
T COG3283 307 PRLQAKLLRFLNDGTFRRV--GEDHEVHVDVRVICATQVNL------VELVQKGKFREDLFYRLNVLTLNLP-PLRERP- 376 (511)
T ss_pred HHHHHHHHHHhcCCceeec--CCcceEEEEEEEEecccccH------HHHHhcCchHHHHHHHhheeeecCC-ccccCc-
Confidence 9999 99999999999876 77778888899999998641 0111222366788888754332211 111110
Q ss_pred HHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCC
Q 040742 446 RVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMT 525 (581)
Q Consensus 446 ~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls 525 (581)
.+-.++..-++.++..-... -.|+|+
T Consensus 377 -----------------------------------------------------~di~pL~e~Fv~q~s~elg~-p~pkl~ 402 (511)
T COG3283 377 -----------------------------------------------------QDIMPLAELFVQQFSDELGV-PRPKLA 402 (511)
T ss_pred -----------------------------------------------------ccchHHHHHHHHHHHHHhCC-CCCccC
Confidence 01123334455555544443 379999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 526 KPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 526 ~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
++....+.+| .+|-++|+|...|--|.+. +++ ..++.+|+
T Consensus 403 ~~~~~~L~~y------------~WpGNVRqL~N~iyRA~s~--~Eg-~~l~i~~i 442 (511)
T COG3283 403 ADLLTVLTRY------------AWPGNVRQLKNAIYRALTL--LEG-YELRIEDI 442 (511)
T ss_pred HHHHHHHHHc------------CCCccHHHHHHHHHHHHHH--hcc-Cccchhhc
Confidence 9999999875 5688999999988766543 333 34444443
No 98
>PLN03025 replication factor C subunit; Provisional
Probab=99.18 E-value=1.3e-10 Score=119.90 Aligned_cols=134 Identities=25% Similarity=0.279 Sum_probs=77.3
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcE----EEecCCCccCCc
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGI----YVCGNATTKAGL 329 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~----~~~~~~~~~~~l 329 (581)
.+++|++.+...+...+..+.. .|+||+||||||||++|+++++.+...- +.....+...+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~--------------~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~ 78 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNM--------------PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGI 78 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCC--------------ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccH
Confidence 3578999988877655444321 2899999999999999999998863211 110000000000
Q ss_pred eeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCC
Q 040742 330 TVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGH 408 (581)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~ 408 (581)
..+++.. ..+.............+++|||+|.|+...+ +|+..||.- +..+.++.++|...
T Consensus 79 --~~vr~~i-~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-------------~~~t~~il~~n~~~-- 140 (319)
T PLN03025 79 --DVVRNKI-KMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-------------SNTTRFALACNTSS-- 140 (319)
T ss_pred --HHHHHHH-HHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-------------cCCceEEEEeCCcc--
Confidence 0000000 0000000000012357999999999998888 899988741 12244666777542
Q ss_pred CCCccChhhhcCCChhhhcccc
Q 040742 409 YNRAKTVNENLKMSAALLSRFD 430 (581)
Q Consensus 409 ~~~~~~~~~~~~l~~all~RFd 430 (581)
.+.++|.+|+.
T Consensus 141 -----------~i~~~L~SRc~ 151 (319)
T PLN03025 141 -----------KIIEPIQSRCA 151 (319)
T ss_pred -----------ccchhHHHhhh
Confidence 16789999983
No 99
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.17 E-value=2.8e-10 Score=121.52 Aligned_cols=146 Identities=23% Similarity=0.315 Sum_probs=86.7
Q ss_pred ccccccHHHHHH---HHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCc
Q 040742 254 PSIYGHELVKAG---ITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGL 329 (581)
Q Consensus 254 p~I~G~e~vk~~---lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l 329 (581)
.+++|++.+... +...+.++.. .|++|+||||||||++|+.+++.....+. ++........+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~--------------~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~i 77 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRL--------------SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDL 77 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCC--------------ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHH
Confidence 358899887433 4444433310 28999999999999999999998766554 33221110000
Q ss_pred eeEEEecCccccceecc-ceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEee--CCC
Q 040742 330 TVAVVKDSVTNDYAFEA-GAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAA--NPV 405 (581)
Q Consensus 330 ~~~~~~~~~~~~~~~~~-g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~--Np~ 405 (581)
+ ...-.. .......+.+++|||++++....+ .|+..|+++.+ .+++++ ||.
T Consensus 78 -----r-----~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~i---------------ilI~att~n~~ 132 (413)
T PRK13342 78 -----R-----EVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTI---------------TLIGATTENPS 132 (413)
T ss_pred -----H-----HHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcE---------------EEEEeCCCChh
Confidence 0 000000 000112467999999999998877 89999987543 344443 332
Q ss_pred CCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 406 GGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 406 ~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
+ .+.++|++|| .++.+.. ++.+....+..+.+.
T Consensus 133 ---~----------~l~~aL~SR~-~~~~~~~-ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 133 ---F----------EVNPALLSRA-QVFELKP-LSEEDIEQLLKRALE 165 (413)
T ss_pred ---h----------hccHHHhccc-eeeEeCC-CCHHHHHHHHHHHHH
Confidence 1 2789999999 4455444 444444444444443
No 100
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.17 E-value=4.4e-10 Score=112.58 Aligned_cols=150 Identities=20% Similarity=0.255 Sum_probs=84.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEE----ecCCCccCCceeEEEecCccccceeccceee---ecCceEEEEcCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYV----CGNATTKAGLTVAVVKDSVTNDYAFEAGAMV---LADSGLCCIDEFD 363 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~---~a~~gil~iDEi~ 363 (581)
|+||+||+|||||.+++...+.++...+. .-...+.+..+.... .....-..|... ....-|+||||++
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~i----e~~l~k~~~~~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKII----ESKLEKRRGRVYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCC----CTTECECTTEEEEEESSSEEEEEEETTT
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHH----hhcEEcCCCCCCCCCCCcEEEEEecccC
Confidence 99999999999999999888766553331 111111111110000 011111111111 1123589999999
Q ss_pred CCCHHH---H----HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcC
Q 040742 364 KMSAEH---Q----ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILL 436 (581)
Q Consensus 364 ~~~~~~---~----~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~ 436 (581)
...++. + -|.+.|+.|.+.-.+......+ .++.++||+||..|+.. +++.|++.|-++. .
T Consensus 111 ~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i-~~i~~vaa~~p~~Gr~~----------is~R~~r~f~i~~--~ 177 (272)
T PF12775_consen 111 MPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSI-EDIQFVAAMNPTGGRNP----------ISPRFLRHFNILN--I 177 (272)
T ss_dssp -S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEE-CSEEEEEEESSTTT--S----------HHHHHHTTEEEEE---
T ss_pred CCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEE-eeeEEEEecCCCCCCCC----------CChHHhhheEEEE--e
Confidence 877552 2 3567888877665433233333 45889999999877765 8999999995433 3
Q ss_pred CCCCHHHHHHHHHHHHhhccC
Q 040742 437 DKPDELLDKRVSEHIMSLHSG 457 (581)
Q Consensus 437 d~~~~~~d~~i~~~il~~~~~ 457 (581)
+.|+.+....|-..++..+..
T Consensus 178 ~~p~~~sl~~If~~il~~~l~ 198 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQSHLK 198 (272)
T ss_dssp ---TCCHHHHHHHHHHHHHTC
T ss_pred cCCChHHHHHHHHHHHhhhcc
Confidence 677777777777777776543
No 101
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=2.7e-10 Score=127.43 Aligned_cols=147 Identities=22% Similarity=0.229 Sum_probs=86.2
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceee-EEeCCCCChHHHHHHHHHHHCCCcEEEe----cCCC---
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHV-IVVGDPGLGKSQLLQAAAAVSPRGIYVC----GNAT--- 324 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~i-LL~G~pGtGKT~la~~la~~~~~~~~~~----~~~~--- 324 (581)
..+|+||+.+++.|..++..+.. .|. ||+||||||||++|+.+++.+...-... |...
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl--------------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRL--------------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCC--------------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 35688999999998887776631 165 8999999999999999999886421111 1000
Q ss_pred c-cCCce-eEEEecCc--ccc--c-eeccce---eeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeC
Q 040742 325 T-KAGLT-VAVVKDSV--TND--Y-AFEAGA---MVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLS 393 (581)
Q Consensus 325 ~-~~~l~-~~~~~~~~--~~~--~-~~~~g~---l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~ 393 (581)
. ..+.. .....+.. .+. + .+.... -......|++|||+++|+.+.+ +|+..||+- +
T Consensus 81 ~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP-------------P 147 (944)
T PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP-------------P 147 (944)
T ss_pred HHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc-------------C
Confidence 0 00000 00001110 000 0 000000 0112356999999999998887 999999862 2
Q ss_pred CCeEEEE-eeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCH
Q 040742 394 ARTSVLA-AANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDE 441 (581)
Q Consensus 394 ~~~~via-a~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~ 441 (581)
..+.+|. |+++.. |.+++++|+ .+|.+...+.+
T Consensus 148 ~~vrFILaTTe~~k--------------Ll~TIlSRC-q~f~fkpLs~e 181 (944)
T PRK14949 148 EHVKFLLATTDPQK--------------LPVTVLSRC-LQFNLKSLTQD 181 (944)
T ss_pred CCeEEEEECCCchh--------------chHHHHHhh-eEEeCCCCCHH
Confidence 2333434 444422 788999999 65665544433
No 102
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.15 E-value=4.7e-10 Score=128.90 Aligned_cols=215 Identities=16% Similarity=0.198 Sum_probs=127.9
Q ss_pred hHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcE---EE
Q 040742 243 DIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGI---YV 319 (581)
Q Consensus 243 ~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~---~~ 319 (581)
++-......-...++|++...+.++..|..... -|++|+||||||||++++.+++.+.... +.
T Consensus 176 ~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~--------------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l 241 (852)
T TIGR03345 176 DLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQ--------------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPAL 241 (852)
T ss_pred hHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCc--------------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccc
Confidence 344444455556789999988888776665431 2899999999999999999998763210 00
Q ss_pred ecCCC---ccCCceeEEEecCccccceeccceee----e-cCceEEEEcCCCCCCH--------HHH-HHHHHHHccEEE
Q 040742 320 CGNAT---TKAGLTVAVVKDSVTNDYAFEAGAMV----L-ADSGLCCIDEFDKMSA--------EHQ-ALLEAMEQQCVS 382 (581)
Q Consensus 320 ~~~~~---~~~~l~~~~~~~~~~~~~~~~~g~l~----~-a~~gil~iDEi~~~~~--------~~~-~L~~~me~~~i~ 382 (581)
.+... ....+.+.. ...|+|.-.-..+. . ..+.|+||||++.+.. +.. .|..+|+.|.
T Consensus 242 ~~~~i~~l~l~~l~ag~---~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~-- 316 (852)
T TIGR03345 242 RNVRLLSLDLGLLQAGA---SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGE-- 316 (852)
T ss_pred cCCeEEEeehhhhhccc---ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCC--
Confidence 11000 000011100 01122211100000 0 1356999999998853 111 3556665543
Q ss_pred EeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCc
Q 040742 383 VAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHS 462 (581)
Q Consensus 383 i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~ 462 (581)
+.+|+||++.+ |. ..+..++||.+||..+ ..+.|+.+....|...+...+...+
T Consensus 317 -------------l~~IgaTT~~e--~~------~~~~~d~AL~rRf~~i--~v~eps~~~~~~iL~~~~~~~e~~~--- 370 (852)
T TIGR03345 317 -------------LRTIAATTWAE--YK------KYFEKDPALTRRFQVV--KVEEPDEETAIRMLRGLAPVLEKHH--- 370 (852)
T ss_pred -------------eEEEEecCHHH--Hh------hhhhccHHHHHhCeEE--EeCCCCHHHHHHHHHHHHHhhhhcC---
Confidence 55788888752 11 1233899999999654 3477777777777555554322111
Q ss_pred ccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCc-CCHHHHHHHHHHHHHHh
Q 040742 463 SAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPR-MTKPAAEILQKFYLKLR 540 (581)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~-ls~~a~~~i~~~y~~lR 540 (581)
.-.++.+.+...+.++.+++.-. +++.|.++|...-...|
T Consensus 371 --------------------------------------~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~ 411 (852)
T TIGR03345 371 --------------------------------------GVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVA 411 (852)
T ss_pred --------------------------------------CCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHH
Confidence 12366777888888888877554 79999999998655554
No 103
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=5.2e-10 Score=121.70 Aligned_cols=140 Identities=23% Similarity=0.255 Sum_probs=82.4
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEE----ecCC-----
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYV----CGNA----- 323 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~----~~~~----- 323 (581)
..+|+|++.+++.|..++..|... -.+||+||||+|||++|+.+|+.+...-.. +|..
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl~-------------HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~ 80 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRLH-------------HAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKA 80 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCC-------------eEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHH
Confidence 356999999999998888876311 156999999999999999999987531100 0000
Q ss_pred ---CccCCceeEEEecCc--ccc--c--eeccc--eeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEe
Q 040742 324 ---TTKAGLTVAVVKDSV--TND--Y--AFEAG--AMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVAS 391 (581)
Q Consensus 324 ---~~~~~l~~~~~~~~~--~~~--~--~~~~g--~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~ 391 (581)
....++. ..+.. .+. + ..... .-......|++|||+++|+.... +|+..||+-
T Consensus 81 I~~g~hpDvi---EIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP------------ 145 (702)
T PRK14960 81 VNEGRFIDLI---EIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP------------ 145 (702)
T ss_pred HhcCCCCceE---EecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC------------
Confidence 0001111 01110 000 0 00000 00112356999999999998777 899999861
Q ss_pred eCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEc
Q 040742 392 LSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFIL 435 (581)
Q Consensus 392 ~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~ 435 (581)
+..+.+|.+++... +++.++++|+ .++-+
T Consensus 146 -P~~v~FILaTtd~~-------------kIp~TIlSRC-q~feF 174 (702)
T PRK14960 146 -PEHVKFLFATTDPQ-------------KLPITVISRC-LQFTL 174 (702)
T ss_pred -CCCcEEEEEECChH-------------hhhHHHHHhh-heeec
Confidence 22234444444321 1778999999 44443
No 104
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.13 E-value=1.4e-10 Score=115.09 Aligned_cols=145 Identities=23% Similarity=0.410 Sum_probs=88.9
Q ss_pred CccccccHHHH--HHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE----EecCCCcc
Q 040742 253 CPSIYGHELVK--AGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY----VCGNATTK 326 (581)
Q Consensus 253 ~p~I~G~e~vk--~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~----~~~~~~~~ 326 (581)
..+++||+.+. .+++..++... +++ .++|+||||||||+||+.++......-| ++......
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ieq~--------~ip-----SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t 203 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIEQN--------RIP-----SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKT 203 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHHcC--------CCC-----ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccch
Confidence 34577877654 35666666432 222 6999999999999999999998765422 22222111
Q ss_pred CCceeEEEecCccccceeccce-eeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCC
Q 040742 327 AGLTVAVVKDSVTNDYAFEAGA-MVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANP 404 (581)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~g~-l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np 404 (581)
.++ ++. +.-.... .....+-|+||||++++....| .++-.+|+|.|++. |. .|-||
T Consensus 204 ~dv-----R~i----fe~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lI--GA-----------TTENP 261 (554)
T KOG2028|consen 204 NDV-----RDI----FEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLI--GA-----------TTENP 261 (554)
T ss_pred HHH-----HHH----HHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEE--ec-----------ccCCC
Confidence 111 110 0000000 0111356999999999998888 88888898887764 11 22355
Q ss_pred CCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHH
Q 040742 405 VGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKR 446 (581)
Q Consensus 405 ~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~ 446 (581)
. | ++..+|++|+ .+|++...+-......
T Consensus 262 S---F----------qln~aLlSRC-~VfvLekL~~n~v~~i 289 (554)
T KOG2028|consen 262 S---F----------QLNAALLSRC-RVFVLEKLPVNAVVTI 289 (554)
T ss_pred c---c----------chhHHHHhcc-ceeEeccCCHHHHHHH
Confidence 4 2 2889999999 6677766555444433
No 105
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.6e-09 Score=113.71 Aligned_cols=145 Identities=22% Similarity=0.233 Sum_probs=83.8
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEEEecCCC--------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNAT-------- 324 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~-------- 324 (581)
.+|+||+.+++.+..++..|.. .| +||+||||+|||++|+.+++.+.......+...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~--------------~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~ 81 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRI--------------HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKE 81 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCC--------------CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 4689999999998888876631 15 589999999999999999988752110000000
Q ss_pred ----ccCCceeEEEecCcc--c--cc--eecc-c-eeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEe
Q 040742 325 ----TKAGLTVAVVKDSVT--N--DY--AFEA-G-AMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVAS 391 (581)
Q Consensus 325 ----~~~~l~~~~~~~~~~--~--~~--~~~~-g-~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~ 391 (581)
...++.. .++.. + .. .... . .-......|++|||+++++...+ +|+..||+-
T Consensus 82 ~~~~~~~d~~~---~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~------------ 146 (363)
T PRK14961 82 IEKGLCLDLIE---IDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP------------ 146 (363)
T ss_pred HhcCCCCceEE---ecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC------------
Confidence 0001110 01100 0 00 0000 0 00112356999999999998776 899988862
Q ss_pred eCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHH
Q 040742 392 LSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELL 443 (581)
Q Consensus 392 ~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~ 443 (581)
+..+.+|.+++... ++.+++.+|+ ..+.+. .++.+.
T Consensus 147 -~~~~~fIl~t~~~~-------------~l~~tI~SRc-~~~~~~-~l~~~e 182 (363)
T PRK14961 147 -PQHIKFILATTDVE-------------KIPKTILSRC-LQFKLK-IISEEK 182 (363)
T ss_pred -CCCeEEEEEcCChH-------------hhhHHHHhhc-eEEeCC-CCCHHH
Confidence 22333444444221 1788999999 545443 343333
No 106
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.12 E-value=5.2e-10 Score=126.24 Aligned_cols=201 Identities=14% Similarity=0.203 Sum_probs=120.4
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC-----C-----CcEEEecC
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS-----P-----RGIYVCGN 322 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~-----~-----~~~~~~~~ 322 (581)
...++|.+...+.+...|..... .|+||+||||||||++++.++..+ | ..++..
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~--------------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-- 248 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRK--------------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-- 248 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCC--------------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec--
Confidence 34589998888888776665321 289999999999999999999754 1 111100
Q ss_pred CCccCCceeEEEecCccccceeccc----eeeecCceEEEEcCCCCCC---------HHHH-HHHHHHHccEEEEeeCCe
Q 040742 323 ATTKAGLTVAVVKDSVTNDYAFEAG----AMVLADSGLCCIDEFDKMS---------AEHQ-ALLEAMEQQCVSVAKAGL 388 (581)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~g----~l~~a~~gil~iDEi~~~~---------~~~~-~L~~~me~~~i~i~k~g~ 388 (581)
+...+.+.. ...|.|...-. .+....++|+||||++.+- .+.. .|..+++.|
T Consensus 249 --~~~~llaG~---~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g--------- 314 (758)
T PRK11034 249 --DIGSLLAGT---KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--------- 314 (758)
T ss_pred --cHHHHhccc---chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC---------
Confidence 001111110 01122221111 1112346899999998762 1112 244455433
Q ss_pred eEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCc
Q 040742 389 VASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKP 468 (581)
Q Consensus 389 ~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~ 468 (581)
++.+|+|+|+.+ | ...+..+++|.+||+.+ ..+.|+.+....|.+.+...+...+
T Consensus 315 ------~i~vIgATt~~E--~------~~~~~~D~AL~rRFq~I--~v~ePs~~~~~~IL~~~~~~ye~~h--------- 369 (758)
T PRK11034 315 ------KIRVIGSTTYQE--F------SNIFEKDRALARRFQKI--DITEPSIEETVQIINGLKPKYEAHH--------- 369 (758)
T ss_pred ------CeEEEecCChHH--H------HHHhhccHHHHhhCcEE--EeCCCCHHHHHHHHHHHHHHhhhcc---------
Confidence 366889999852 1 11223889999999753 3478888888888776655433321
Q ss_pred ccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCc-CCHHHHHHHHHHHHHHh
Q 040742 469 RTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPR-MTKPAAEILQKFYLKLR 540 (581)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~-ls~~a~~~i~~~y~~lR 540 (581)
...++.+.++..+.++.+++... +++.|.+++...-...|
T Consensus 370 --------------------------------~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~ 410 (758)
T PRK11034 370 --------------------------------DVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARAR 410 (758)
T ss_pred --------------------------------CCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhc
Confidence 12355666777777777776655 78888888877655443
No 107
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=1.1e-09 Score=120.48 Aligned_cols=146 Identities=26% Similarity=0.287 Sum_probs=86.8
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEEEecCCC--------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNAT-------- 324 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~-------- 324 (581)
.+|+||+.+++.|...+..+.. .| +||+|++|||||++++.+++.+.......+...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL--------------~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~ 81 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRL--------------HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCC--------------CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHH
Confidence 4689999999999888876631 14 589999999999999999998753211100000
Q ss_pred -ccCCceeEEEecCcc--cc--c--eecc--ceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCC
Q 040742 325 -TKAGLTVAVVKDSVT--ND--Y--AFEA--GAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSA 394 (581)
Q Consensus 325 -~~~~l~~~~~~~~~~--~~--~--~~~~--g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~ 394 (581)
........+..+..+ +. . .++. .........|++|||+++|+...+ .|+..||+- +.
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP-------------P~ 148 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PP 148 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-------------CC
Confidence 000000011111110 00 0 0000 000112457999999999998776 899999862 23
Q ss_pred CeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCC
Q 040742 395 RTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPD 440 (581)
Q Consensus 395 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~ 440 (581)
.+.||.++|... +|.++++||+ ..|.+...+.
T Consensus 149 ~v~FILaTtd~~-------------KIp~TIrSRC-q~f~Fk~Ls~ 180 (830)
T PRK07003 149 HVKFILATTDPQ-------------KIPVTVLSRC-LQFNLKQMPA 180 (830)
T ss_pred CeEEEEEECChh-------------hccchhhhhe-EEEecCCcCH
Confidence 455555555432 1889999999 6566544443
No 108
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6.2e-11 Score=124.69 Aligned_cols=168 Identities=22% Similarity=0.286 Sum_probs=104.5
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeE
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVA 332 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~ 332 (581)
.+|-|.+.++..+-++++...++. .....+.++-...|||+||||||||.||+++|..++..+. +.|.. |...
T Consensus 511 ~dIGaL~~vR~eL~~aI~~PiK~p-d~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPE-----LlNk 584 (802)
T KOG0733|consen 511 DDIGALEEVRLELNMAILAPIKRP-DLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPE-----LLNK 584 (802)
T ss_pred hhcccHHHHHHHHHHHHhhhccCH-HHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHH-----HHHH
Confidence 346688999999988887654321 1111222333457999999999999999999999876554 44433 2221
Q ss_pred EEecCccc--cceeccceeeecCceEEEEcCCCCCCHHH-----------H-HHHHHHHccEEEEeeCCeeEeeCCCeEE
Q 040742 333 VVKDSVTN--DYAFEAGAMVLADSGLCCIDEFDKMSAEH-----------Q-ALLEAMEQQCVSVAKAGLVASLSARTSV 398 (581)
Q Consensus 333 ~~~~~~~~--~~~~~~g~l~~a~~gil~iDEi~~~~~~~-----------~-~L~~~me~~~i~i~k~g~~~~~~~~~~v 398 (581)
.+.+.... ..-.++-+ ....|+|+||+|.+-+.. - .|+..|+ |...+ ..+.|
T Consensus 585 YVGESErAVR~vFqRAR~---saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElD---------Gl~~R--~gV~v 650 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARA---SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELD---------GLEER--RGVYV 650 (802)
T ss_pred HhhhHHHHHHHHHHHhhc---CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhc---------ccccc--cceEE
Confidence 11111000 00001111 136899999999986531 1 3444443 33222 24789
Q ss_pred EEeeCCCCCCCCCccChhhhcCCChhhh--ccccEeEEcCCCCCHHHHHHHHHHHHhhc
Q 040742 399 LAAANPVGGHYNRAKTVNENLKMSAALL--SRFDLVFILLDKPDELLDKRVSEHIMSLH 455 (581)
Q Consensus 399 iaa~Np~~g~~~~~~~~~~~~~l~~all--~RFdli~~~~d~~~~~~d~~i~~~il~~~ 455 (581)
|||||.+. -+++|+| -|||-+. +.+.|+.+....|.+.+.+.+
T Consensus 651 iaATNRPD-------------iIDpAiLRPGRlDk~L-yV~lPn~~eR~~ILK~~tkn~ 695 (802)
T KOG0733|consen 651 IAATNRPD-------------IIDPAILRPGRLDKLL-YVGLPNAEERVAILKTITKNT 695 (802)
T ss_pred EeecCCCc-------------ccchhhcCCCccCcee-eecCCCHHHHHHHHHHHhccC
Confidence 99999863 1889999 5999744 468899888888877766643
No 109
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.09 E-value=8e-10 Score=124.17 Aligned_cols=148 Identities=22% Similarity=0.273 Sum_probs=84.0
Q ss_pred ccccccHHHHH--HHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCce
Q 040742 254 PSIYGHELVKA--GITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLT 330 (581)
Q Consensus 254 p~I~G~e~vk~--~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~ 330 (581)
.+++|++.+.. ..+..++.... . .|++|+||||||||++|+++++.....+. ++... .++
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~--------~-----~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~---~~i- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADR--------V-----GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL---AGV- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCC--------C-----ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh---hhh-
Confidence 46889988764 33333333210 0 28999999999999999999988754432 22111 000
Q ss_pred eEEEecCccccceecc-cee-eecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCC
Q 040742 331 VAVVKDSVTNDYAFEA-GAM-VLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGG 407 (581)
Q Consensus 331 ~~~~~~~~~~~~~~~~-g~l-~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g 407 (581)
.+. ....-.. ..+ ......++||||++.++...+ .|+..|+++.+ .+|+++.+..
T Consensus 91 ----~di--r~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~I---------------iLI~aTTenp- 148 (725)
T PRK13341 91 ----KDL--RAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTI---------------TLIGATTENP- 148 (725)
T ss_pred ----HHH--HHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceE---------------EEEEecCCCh-
Confidence 000 0000000 000 112357999999999998877 89998887543 3445443321
Q ss_pred CCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 408 HYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 408 ~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
.+ .+.++++||+.+ +.+.. ++.+....+..+++
T Consensus 149 ~~----------~l~~aL~SR~~v-~~l~p-Ls~edi~~IL~~~l 181 (725)
T PRK13341 149 YF----------EVNKALVSRSRL-FRLKS-LSDEDLHQLLKRAL 181 (725)
T ss_pred Hh----------hhhhHhhccccc-eecCC-CCHHHHHHHHHHHH
Confidence 01 277999999844 44443 44444444443333
No 110
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=1.5e-09 Score=117.97 Aligned_cols=142 Identities=22% Similarity=0.251 Sum_probs=82.9
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEEE----ecCCC----
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIYV----CGNAT---- 324 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~~----~~~~~---- 324 (581)
.+|+||+.+++.+..++..+.. .| +||+||||||||++|+.+++.+...-.. +|.-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l--------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYL--------------HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCC--------------CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 4689999999999988877631 15 6999999999999999999987432100 01000
Q ss_pred -ccCCceeEEEecCc--cccce----ecc--ceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCC
Q 040742 325 -TKAGLTVAVVKDSV--TNDYA----FEA--GAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSA 394 (581)
Q Consensus 325 -~~~~l~~~~~~~~~--~~~~~----~~~--g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~ 394 (581)
.......-...+.. .+.-. .+. -.-......|++|||+++|+.+.. +|+..||+- |.
T Consensus 82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-------------p~ 148 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-------------PS 148 (509)
T ss_pred HhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-------------CC
Confidence 00000000011110 01000 000 000112356999999999998877 899999851 33
Q ss_pred CeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcC
Q 040742 395 RTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILL 436 (581)
Q Consensus 395 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~ 436 (581)
.+.+|.+++... ++.++++||+ .+|.+.
T Consensus 149 ~~~fIlattd~~-------------kl~~tI~SRc-~~~~f~ 176 (509)
T PRK14958 149 HVKFILATTDHH-------------KLPVTVLSRC-LQFHLA 176 (509)
T ss_pred CeEEEEEECChH-------------hchHHHHHHh-hhhhcC
Confidence 344444444321 1778899998 444433
No 111
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.07 E-value=3.6e-10 Score=128.37 Aligned_cols=150 Identities=19% Similarity=0.298 Sum_probs=113.5
Q ss_pred CceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCC-ccCCceeEEEecCccccceeccceeeec--CceEEEEcCCC
Q 040742 288 GDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNAT-TKAGLTVAVVKDSVTNDYAFEAGAMVLA--DSGLCCIDEFD 363 (581)
Q Consensus 288 g~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~~~~~~g~l~~a--~~gil~iDEi~ 363 (581)
.+.++|+.||+.+|||.++.++|+..+..+. ++.... ......++.+.+. +|...+..|.++-| .|.++++||++
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd-~G~lsFkEGvLVeAlR~GyWIVLDELN 965 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDD-DGSLSFKEGVLVEALRRGYWIVLDELN 965 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecC-CCceeeehhHHHHHHhcCcEEEeeccc
Confidence 3468999999999999999999999988765 544332 2334555554443 57788999999876 67899999999
Q ss_pred CCCHHHH-HHHHHHHc-cEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCH
Q 040742 364 KMSAEHQ-ALLEAMEQ-QCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDE 441 (581)
Q Consensus 364 ~~~~~~~-~L~~~me~-~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~ 441 (581)
.++.+.. +|...+++ +.+.++.....+..+.+|.+.||.||+.+ |... ..++.|+..|| +-+.+-|.|..
T Consensus 966 LApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~-YgGR------K~LSrAFRNRF-lE~hFddiped 1037 (4600)
T COG5271 966 LAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGG-YGGR------KGLSRAFRNRF-LEMHFDDIPED 1037 (4600)
T ss_pred cCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCcc-ccch------HHHHHHHHhhh-HhhhcccCcHH
Confidence 9999887 88888876 67788776677777889999999999832 2211 13999999999 66666667766
Q ss_pred HHHHH
Q 040742 442 LLDKR 446 (581)
Q Consensus 442 ~~d~~ 446 (581)
+.+..
T Consensus 1038 Ele~I 1042 (4600)
T COG5271 1038 ELEEI 1042 (4600)
T ss_pred HHHHH
Confidence 55443
No 112
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.7e-10 Score=119.98 Aligned_cols=171 Identities=22% Similarity=0.227 Sum_probs=99.8
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeE
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVA 332 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~ 332 (581)
.+|-|.+...+.++..+..-..++. ...+.++..-.+||.||||||||.||+++|..++-.++ +++... ..|..+.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~--~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApei-vSGvSGE 266 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEV--FSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEI-VSGVSGE 266 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchh--HhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhh-hcccCcc
Confidence 4566776665555444332111111 11111222235999999999999999999999987776 554432 1222211
Q ss_pred EEecCccccceeccceeeecCceEEEEcCCCCCCHHHH------------HHHHHHHccEEEEeeCCeeEeeCCCeEEEE
Q 040742 333 VVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ------------ALLEAMEQQCVSVAKAGLVASLSARTSVLA 400 (581)
Q Consensus 333 ~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~------------~L~~~me~~~i~i~k~g~~~~~~~~~~via 400 (581)
....-..+-..+. .....|+||||||.+.+..+ .|+..|++-. ........+.||+
T Consensus 267 ----SEkkiRelF~~A~-~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~-------~~~~~g~~VlVIg 334 (802)
T KOG0733|consen 267 ----SEKKIRELFDQAK-SNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELS-------NEKTKGDPVLVIG 334 (802)
T ss_pred ----cHHHHHHHHHHHh-ccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccc-------ccccCCCCeEEEe
Confidence 1000000000111 12368999999999886532 3344444311 1111235689999
Q ss_pred eeCCCCCCCCCccChhhhcCCChhhh--ccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 401 AANPVGGHYNRAKTVNENLKMSAALL--SRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 401 a~Np~~g~~~~~~~~~~~~~l~~all--~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
|||.+.. |+++|. -|||- -+-...|++.....|.+-+..
T Consensus 335 ATnRPDs-------------lDpaLRRaGRFdr-EI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 335 ATNRPDS-------------LDPALRRAGRFDR-EICLGVPSETAREEILRIICR 375 (802)
T ss_pred cCCCCcc-------------cCHHHhccccccc-eeeecCCchHHHHHHHHHHHh
Confidence 9998742 888998 59986 444578888888888777765
No 113
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.07 E-value=5.1e-10 Score=131.61 Aligned_cols=129 Identities=17% Similarity=0.239 Sum_probs=73.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccC---CceeE---------------EEecCccc--c--------
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKA---GLTVA---------------VVKDSVTN--D-------- 341 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~---~l~~~---------------~~~~~~~~--~-------- 341 (581)
.|||+||||||||.||+++|..+...++ +++...-.. +.... ..++.... +
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~ 1711 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMD 1711 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhh
Confidence 5999999999999999999999977665 554332110 00000 00000000 0
Q ss_pred ceeccce------eeec---CceEEEEcCCCCCCHHH-----H-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCC
Q 040742 342 YAFEAGA------MVLA---DSGLCCIDEFDKMSAEH-----Q-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVG 406 (581)
Q Consensus 342 ~~~~~g~------l~~a---~~gil~iDEi~~~~~~~-----~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~ 406 (581)
.....+. ..+| ...|++|||||.+.... . .|+..|+... ...-..++.||||||.+.
T Consensus 1712 m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~--------~~~s~~~VIVIAATNRPD 1783 (2281)
T CHL00206 1712 MMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC--------ERCSTRNILVIASTHIPQ 1783 (2281)
T ss_pred hhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccc--------ccCCCCCEEEEEeCCCcc
Confidence 0000011 1122 36899999999987431 1 3444453210 001134588999999874
Q ss_pred CCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCH
Q 040742 407 GHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDE 441 (581)
Q Consensus 407 g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~ 441 (581)
. +++||++ |||-.+.+ +.|+.
T Consensus 1784 ~-------------LDPALLRPGRFDR~I~I-r~Pd~ 1806 (2281)
T CHL00206 1784 K-------------VDPALIAPNKLNTCIKI-RRLLI 1806 (2281)
T ss_pred c-------------CCHhHcCCCCCCeEEEe-CCCCc
Confidence 1 9999998 99986654 44443
No 114
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=1.2e-09 Score=118.76 Aligned_cols=142 Identities=20% Similarity=0.171 Sum_probs=83.6
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEEEe----cCC-----
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIYVC----GNA----- 323 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~~~----~~~----- 323 (581)
.+|+||+.+++.+...+..+.. .| +||+||||+|||++|+.+++.+....... |.-
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl--------------~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~ 81 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKV--------------HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVA 81 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 4688999999998888876631 14 78999999999999999999774311100 000
Q ss_pred ---CccCCceeEEEecCcccc----ceecc--ceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeC
Q 040742 324 ---TTKAGLTVAVVKDSVTND----YAFEA--GAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLS 393 (581)
Q Consensus 324 ---~~~~~l~~~~~~~~~~~~----~~~~~--g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~ 393 (581)
.+..++..- ......|. -.+.. ..-...+..|++|||+++++...+ +|+..||+. +
T Consensus 82 i~~~~~~dliei-daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep-------------p 147 (546)
T PRK14957 82 INNNSFIDLIEI-DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP-------------P 147 (546)
T ss_pred HhcCCCCceEEe-ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-------------C
Confidence 000111110 00000000 00000 001223567999999999998877 999999862 2
Q ss_pred CCeE-EEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCC
Q 040742 394 ARTS-VLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDK 438 (581)
Q Consensus 394 ~~~~-viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~ 438 (581)
..+. |++|+++.. +.++++||+ .++-+...
T Consensus 148 ~~v~fIL~Ttd~~k--------------il~tI~SRc-~~~~f~~L 178 (546)
T PRK14957 148 EYVKFILATTDYHK--------------IPVTILSRC-IQLHLKHI 178 (546)
T ss_pred CCceEEEEECChhh--------------hhhhHHHhe-eeEEeCCC
Confidence 2233 445544321 777899999 55554443
No 115
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.05 E-value=1.6e-09 Score=119.52 Aligned_cols=143 Identities=25% Similarity=0.308 Sum_probs=86.2
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEEE----ecCC-----
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIYV----CGNA----- 323 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~~----~~~~----- 323 (581)
.+|+||+.+++.|...+..|.. .| +||+||+|+|||++|+.+++.+...... +|.-
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl--------------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~ 81 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRL--------------HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCRE 81 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------------CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHH
Confidence 4688999999999888887641 15 5899999999999999999987542110 0000
Q ss_pred ---CccCCceeEEEecCc--cc--cc--eecccee--eecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEe
Q 040742 324 ---TTKAGLTVAVVKDSV--TN--DY--AFEAGAM--VLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVAS 391 (581)
Q Consensus 324 ---~~~~~l~~~~~~~~~--~~--~~--~~~~g~l--~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~ 391 (581)
....++. ..+.. .+ .. ....-.. ......|++|||+++|+...+ +|+..||+-
T Consensus 82 i~~g~~~D~i---eidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP------------ 146 (647)
T PRK07994 82 IEQGRFVDLI---EIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP------------ 146 (647)
T ss_pred HHcCCCCCce---eecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC------------
Confidence 0001111 00110 00 00 0000000 112346999999999998877 999999861
Q ss_pred eCCCeE-EEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCH
Q 040742 392 LSARTS-VLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDE 441 (581)
Q Consensus 392 ~~~~~~-viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~ 441 (581)
+..+. |++|+++.. +.+.++||+ ..|.+...+.+
T Consensus 147 -p~~v~FIL~Tt~~~k--------------Ll~TI~SRC-~~~~f~~Ls~~ 181 (647)
T PRK07994 147 -PEHVKFLLATTDPQK--------------LPVTILSRC-LQFHLKALDVE 181 (647)
T ss_pred -CCCeEEEEecCCccc--------------cchHHHhhh-eEeeCCCCCHH
Confidence 22333 344444432 889999998 66665544443
No 116
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.05 E-value=2.7e-09 Score=104.47 Aligned_cols=148 Identities=24% Similarity=0.303 Sum_probs=90.4
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC-cEEEecCCCccC-Ccee
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR-GIYVCGNATTKA-GLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~-~~~~~~~~~~~~-~l~~ 331 (581)
.++.|++.++.++.-++.++. . .|+||+||||||||..++++++.+.. ..+-++.....+ +..+
T Consensus 36 de~~gQe~vV~~L~~a~~~~~---l-----------p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRI---L-----------PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG 101 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcC---C-----------ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence 468999999999999988732 1 39999999999999999999988754 111111110000 0000
Q ss_pred -EEEecCccccce----eccce--eeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeC
Q 040742 332 -AVVKDSVTNDYA----FEAGA--MVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAAN 403 (581)
Q Consensus 332 -~~~~~~~~~~~~----~~~g~--l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~N 403 (581)
++.+... ..|. ...+. .+...-.|++|||.|.|+.+.| +|...||+-. ..+.++.-+|
T Consensus 102 isvvr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-------------~~trFiLIcn 167 (346)
T KOG0989|consen 102 ISVVREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-------------RTTRFILICN 167 (346)
T ss_pred ccchhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-------------cceEEEEEcC
Confidence 0111110 0000 00000 0111236999999999999999 9999998611 1234555567
Q ss_pred CCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHH
Q 040742 404 PVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELL 443 (581)
Q Consensus 404 p~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~ 443 (581)
... .+..++.||+ --|.++...++..
T Consensus 168 yls-------------rii~pi~SRC-~KfrFk~L~d~~i 193 (346)
T KOG0989|consen 168 YLS-------------RIIRPLVSRC-QKFRFKKLKDEDI 193 (346)
T ss_pred Chh-------------hCChHHHhhH-HHhcCCCcchHHH
Confidence 542 2889999999 5566666555433
No 117
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.05 E-value=3.3e-09 Score=114.70 Aligned_cols=136 Identities=25% Similarity=0.294 Sum_probs=90.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCc---EE-EecCCCccCCceeEEEecC----ccccceeccceeeecCceEEEEcC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRG---IY-VCGNATTKAGLTVAVVKDS----VTNDYAFEAGAMVLADSGLCCIDE 361 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~---~~-~~~~~~~~~~l~~~~~~~~----~~~~~~~~~g~l~~a~~gil~iDE 361 (581)
.++++.|++||||+++++++....++. +. ++...... .+........ .+|......|.+..|++|++||||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEec
Confidence 379999999999999999999887642 22 33332211 1111111111 112222356888899999999999
Q ss_pred CCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEE
Q 040742 362 FDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFI 434 (581)
Q Consensus 362 i~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~ 434 (581)
++.++...| .|+.+++++.+... |.....+.++.+|+|++.... .....-.+.+.|+.|+...-+
T Consensus 242 i~~l~~~~q~~l~~~l~~~~~~~~--~~~~~~~~~~rii~~t~~~~~------~~~~~~~~~~~l~~~l~~~~i 307 (441)
T PRK10365 242 IGDISPMMQVRLLRAIQEREVQRV--GSNQTISVDVRLIAATHRDLA------AEVNAGRFRQDLYYRLNVVAI 307 (441)
T ss_pred cccCCHHHHHHHHHHHccCcEEeC--CCCceeeeceEEEEeCCCCHH------HHHHcCCchHHHHHHhcccee
Confidence 999999998 89999999887654 544556677889999886510 001111267788888865443
No 118
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.05 E-value=8.4e-10 Score=99.27 Aligned_cols=141 Identities=22% Similarity=0.196 Sum_probs=85.2
Q ss_pred ccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC---CCcEE-EecCCCccCCceeEE
Q 040742 258 GHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS---PRGIY-VCGNATTKAGLTVAV 333 (581)
Q Consensus 258 G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~---~~~~~-~~~~~~~~~~l~~~~ 333 (581)
|++.+...+...+.... ..+++++|+||+|||++++.+++.+ ...++ +..........
T Consensus 2 ~~~~~~~~i~~~~~~~~--------------~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~---- 63 (151)
T cd00009 2 GQEEAIEALREALELPP--------------PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLV---- 63 (151)
T ss_pred chHHHHHHHHHHHhCCC--------------CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhH----
Confidence 55666666666665421 0289999999999999999999887 33333 33221111000
Q ss_pred EecCcccc--ceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCC
Q 040742 334 VKDSVTND--YAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYN 410 (581)
Q Consensus 334 ~~~~~~~~--~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~ 410 (581)
....... .............+++++||++.+..... .+++.++...... ..+.++.+++++|+...
T Consensus 64 -~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~--- 132 (151)
T cd00009 64 -VAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLL--- 132 (151)
T ss_pred -HHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCcccc---
Confidence 0000000 00111122234578999999999976655 7778777643321 23457889999998632
Q ss_pred CccChhhhcCCChhhhccccEeEEc
Q 040742 411 RAKTVNENLKMSAALLSRFDLVFIL 435 (581)
Q Consensus 411 ~~~~~~~~~~l~~all~RFdli~~~ 435 (581)
..+.+.+.+||+..+.+
T Consensus 133 --------~~~~~~~~~r~~~~i~~ 149 (151)
T cd00009 133 --------GDLDRALYDRLDIRIVI 149 (151)
T ss_pred --------CCcChhHHhhhccEeec
Confidence 12778999999866554
No 119
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.04 E-value=6.4e-10 Score=126.44 Aligned_cols=134 Identities=21% Similarity=0.348 Sum_probs=99.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecC-CCccCCceeEEEecCccccceeccceeeec--CceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGN-ATTKAGLTVAVVKDSVTNDYAFEAGAMVLA--DSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a--~~gil~iDEi~~~~ 366 (581)
++||.|.||+|||.|+.++|+..+.... ++-. .+.-.+|.++......+|++.+...++..| +||++++||++.++
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLaS 1624 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLAS 1624 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhhH
Confidence 7999999999999999999999876443 3321 112233444433333467777766665444 89999999999999
Q ss_pred HHHH-HHHHHHHc-cEEEEeeCCeeEeeCCCeEEEEeeCCC---CCCCCCccChhhhcCCChhhhccccEeEE
Q 040742 367 AEHQ-ALLEAMEQ-QCVSVAKAGLVASLSARTSVLAAANPV---GGHYNRAKTVNENLKMSAALLSRFDLVFI 434 (581)
Q Consensus 367 ~~~~-~L~~~me~-~~i~i~k~g~~~~~~~~~~viaa~Np~---~g~~~~~~~~~~~~~l~~all~RFdli~~ 434 (581)
.... .|...++. +...++.-..+...+.++.|.||.||. .|+-. +|.++++||-++++
T Consensus 1625 QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKg----------LPkSF~nRFsvV~~ 1687 (4600)
T COG5271 1625 QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKG----------LPKSFLNRFSVVKM 1687 (4600)
T ss_pred HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCccc----------CCHHHhhhhheEEe
Confidence 8766 88888876 566666555678888999999999997 34433 99999999977665
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=6.2e-09 Score=112.57 Aligned_cols=142 Identities=23% Similarity=0.271 Sum_probs=84.2
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceee-EEeCCCCChHHHHHHHHHHHCCCcE----EEecCC-----
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHV-IVVGDPGLGKSQLLQAAAAVSPRGI----YVCGNA----- 323 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~i-LL~G~pGtGKT~la~~la~~~~~~~----~~~~~~----- 323 (581)
.+|+||+.+++.+..++..|.. .|+ ||+||||+|||++|+++++.+...- ..++.-
T Consensus 14 deiiGqe~v~~~L~~~I~~grl--------------~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~ 79 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRL--------------AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQS 79 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCC--------------CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 5699999999999988877641 154 8999999999999999998863210 000000
Q ss_pred ---CccCCceeEEEecCcc--c--cc--eecc-c-eeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEe
Q 040742 324 ---TTKAGLTVAVVKDSVT--N--DY--AFEA-G-AMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVAS 391 (581)
Q Consensus 324 ---~~~~~l~~~~~~~~~~--~--~~--~~~~-g-~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~ 391 (581)
....++. ..+..+ + .. ..+. . .-..+...|++|||+++|+.+.+ +|+..||+-
T Consensus 80 ~~~~~h~dv~---eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp------------ 144 (535)
T PRK08451 80 ALENRHIDII---EMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP------------ 144 (535)
T ss_pred HhhcCCCeEE---EeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc------------
Confidence 0000000 000000 0 00 0000 0 01124567999999999999887 999999861
Q ss_pred eCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCC
Q 040742 392 LSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKP 439 (581)
Q Consensus 392 ~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~ 439 (581)
|..+.+|.+++... ++.++++||+ .++.+...+
T Consensus 145 -p~~t~FIL~ttd~~-------------kL~~tI~SRc-~~~~F~~Ls 177 (535)
T PRK08451 145 -PSYVKFILATTDPL-------------KLPATILSRT-QHFRFKQIP 177 (535)
T ss_pred -CCceEEEEEECChh-------------hCchHHHhhc-eeEEcCCCC
Confidence 23344444444321 1889999998 445544433
No 121
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=1.9e-09 Score=115.58 Aligned_cols=139 Identities=19% Similarity=0.257 Sum_probs=82.0
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcE----EEecC-------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGI----YVCGN------- 322 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~----~~~~~------- 322 (581)
.+++||+.+++.+.-++..|... -++||+||||+|||++|+.+|+.+.... .-+|.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~-------------ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i 79 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIP-------------QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISI 79 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC-------------ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHH
Confidence 56899999999888777766311 1699999999999999999998652210 00000
Q ss_pred -CCccCCceeEEEecCc--ccc--c--eecc--ceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEee
Q 040742 323 -ATTKAGLTVAVVKDSV--TND--Y--AFEA--GAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASL 392 (581)
Q Consensus 323 -~~~~~~l~~~~~~~~~--~~~--~--~~~~--g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~ 392 (581)
..+..++. ..++. .+. . .++. -.-..+...|++|||++.++...+ +|+..||+-
T Consensus 80 ~~~~~~Dv~---eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP------------- 143 (491)
T PRK14964 80 KNSNHPDVI---EIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP------------- 143 (491)
T ss_pred hccCCCCEE---EEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC-------------
Confidence 00011111 11110 010 0 0000 001224568999999999998777 999999861
Q ss_pred CCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEc
Q 040742 393 SARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFIL 435 (581)
Q Consensus 393 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~ 435 (581)
+..+.+|.+++... ++..++++|+ ..+-+
T Consensus 144 p~~v~fIlatte~~-------------Kl~~tI~SRc-~~~~f 172 (491)
T PRK14964 144 APHVKFILATTEVK-------------KIPVTIISRC-QRFDL 172 (491)
T ss_pred CCCeEEEEEeCChH-------------HHHHHHHHhh-eeeec
Confidence 22344444444321 1778999999 44443
No 122
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.03 E-value=8.9e-10 Score=117.88 Aligned_cols=136 Identities=24% Similarity=0.253 Sum_probs=92.4
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHHCCC---cEEEe-cCC---CccCCceeEEEecCccccc-eeccceeeecCceEEEEc
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAVSPR---GIYVC-GNA---TTKAGLTVAVVKDSVTNDY-AFEAGAMVLADSGLCCID 360 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~~~~---~~~~~-~~~---~~~~~l~~~~~~~~~~~~~-~~~~g~l~~a~~gil~iD 360 (581)
++++|+.|+|||||-.+++++...... .+.++ +.. .....|.+..- ...+|.+ ....|.+..|++|.+|+|
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~-GafTga~~kG~~g~~~~A~gGtlFld 414 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVA-GAFTGARRKGYKGKLEQADGGTLFLD 414 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCc-cccccchhccccccceecCCCccHHH
Confidence 369999999999999999999988752 12222 111 11111221111 1112221 134577889999999999
Q ss_pred CCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEE
Q 040742 361 EFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFI 434 (581)
Q Consensus 361 Ei~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~ 434 (581)
||..|+-..| .|+.+++++.|.-- |... .+.++.||+|++..- ..+.++-.+.+.|+-|.....+
T Consensus 415 eIgd~p~~~Qs~LLrVl~e~~v~p~--g~~~-~~vdirvi~ath~dl------~~lv~~g~fredLyyrL~~~~i 480 (606)
T COG3284 415 EIGDMPLALQSRLLRVLQEGVVTPL--GGTR-IKVDIRVIAATHRDL------AQLVEQGRFREDLYYRLNAFVI 480 (606)
T ss_pred HhhhchHHHHHHHHHHHhhCceecc--CCcc-eeEEEEEEeccCcCH------HHHHHcCCchHHHHHHhcCeee
Confidence 9999999999 99999999998765 5444 778899999999751 1233344477888888754333
No 123
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.03 E-value=1.3e-10 Score=103.39 Aligned_cols=113 Identities=28% Similarity=0.387 Sum_probs=72.7
Q ss_pred eEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccC--CceeEEEecCccccceeccceeeec-CceEEEEcCCCCCCH
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKA--GLTVAVVKDSVTNDYAFEAGAMVLA-DSGLCCIDEFDKMSA 367 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~--~l~~~~~~~~~~~~~~~~~g~l~~a-~~gil~iDEi~~~~~ 367 (581)
|||+||||||||++++.+++.+...++ +++...... +...... ..+...+ ... ...|++|||+|.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i-----~~~~~~~---~~~~~~~vl~iDe~d~l~~ 72 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKI-----RDFFKKA---KKSAKPCVLFIDEIDKLFP 72 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHH-----HHHHHHH---HHTSTSEEEEEETGGGTSH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccc-----ccccccc---cccccceeeeeccchhccc
Confidence 689999999999999999999976665 554433210 0000000 0000000 011 258999999999886
Q ss_pred HH-----------H-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhh-ccccEeEE
Q 040742 368 EH-----------Q-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALL-SRFDLVFI 434 (581)
Q Consensus 368 ~~-----------~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all-~RFdli~~ 434 (581)
.. . .|+..|+... ....++.+|+|+|... .++++++ +||+..+.
T Consensus 73 ~~~~~~~~~~~~~~~~L~~~l~~~~----------~~~~~~~vI~ttn~~~-------------~i~~~l~~~rf~~~i~ 129 (132)
T PF00004_consen 73 KSQPSSSSFEQRLLNQLLSLLDNPS----------SKNSRVIVIATTNSPD-------------KIDPALLRSRFDRRIE 129 (132)
T ss_dssp HCSTSSSHHHHHHHHHHHHHHHTTT----------TTSSSEEEEEEESSGG-------------GSCHHHHSTTSEEEEE
T ss_pred ccccccccccccccceeeecccccc----------cccccceeEEeeCChh-------------hCCHhHHhCCCcEEEE
Confidence 64 3 6666666421 1135689999999842 1899999 99998776
Q ss_pred c
Q 040742 435 L 435 (581)
Q Consensus 435 ~ 435 (581)
+
T Consensus 130 ~ 130 (132)
T PF00004_consen 130 F 130 (132)
T ss_dssp E
T ss_pred c
Confidence 4
No 124
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=2.7e-09 Score=115.29 Aligned_cols=138 Identities=19% Similarity=0.233 Sum_probs=83.8
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEe--------cCCC-
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVC--------GNAT- 324 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~--------~~~~- 324 (581)
.+++||+.+.+.+..++..+.. . -++||+||||||||++|+.+|+.+....... +...
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri-----------~--~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~ 87 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRL-----------A--GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN 87 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----------C--ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH
Confidence 4679999999988877776631 1 2799999999999999999999875421110 0000
Q ss_pred -------ccCCceeEEEecCc--ccc-----ce--eccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCC
Q 040742 325 -------TKAGLTVAVVKDSV--TND-----YA--FEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAG 387 (581)
Q Consensus 325 -------~~~~l~~~~~~~~~--~~~-----~~--~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g 387 (581)
...++. ..+.. .+. .. .... -..+...|++|||++.++...+ +|+..||+.
T Consensus 88 C~~i~~~~h~Dv~---eidaas~~~vd~Ir~iie~a~~~-P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-------- 155 (507)
T PRK06645 88 CISFNNHNHPDII---EIDAASKTSVDDIRRIIESAEYK-PLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-------- 155 (507)
T ss_pred HHHHhcCCCCcEE---EeeccCCCCHHHHHHHHHHHHhc-cccCCcEEEEEEChhhcCHHHHHHHHHHHhhc--------
Confidence 000110 01110 000 00 0001 1234578999999999998776 899888751
Q ss_pred eeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEc
Q 040742 388 LVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFIL 435 (581)
Q Consensus 388 ~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~ 435 (581)
+..+.+|.+++... ++++++.+|+ ..+-+
T Consensus 156 -----p~~~vfI~aTte~~-------------kI~~tI~SRc-~~~ef 184 (507)
T PRK06645 156 -----PPHIIFIFATTEVQ-------------KIPATIISRC-QRYDL 184 (507)
T ss_pred -----CCCEEEEEEeCChH-------------HhhHHHHhcc-eEEEc
Confidence 33445555554321 1788999998 44443
No 125
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=1.7e-09 Score=117.43 Aligned_cols=143 Identities=22% Similarity=0.256 Sum_probs=85.2
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcE----E-----EecCC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGI----Y-----VCGNA 323 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~----~-----~~~~~ 323 (581)
.+|+||+.+++.|...+..++. .| +||+|++|+|||++++.+++.+...- . -+|..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRL--------------pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRL--------------HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCC--------------ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 5689999999999988887742 15 59999999999999999999875310 0 00000
Q ss_pred --------CccCCceeEEEecCcc--c--c-ceeccce---eeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeC
Q 040742 324 --------TTKAGLTVAVVKDSVT--N--D-YAFEAGA---MVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKA 386 (581)
Q Consensus 324 --------~~~~~l~~~~~~~~~~--~--~-~~~~~g~---l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~ 386 (581)
.+..++. ..+..+ + . ..+.... -......|++|||+++|+.... +|+..||+
T Consensus 82 ~sC~~I~aG~hpDvi---EIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE-------- 150 (700)
T PRK12323 82 RACTEIDAGRFVDYI---EMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE-------- 150 (700)
T ss_pred HHHHHHHcCCCCcce---EecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc--------
Confidence 0001111 111100 0 0 0000000 0112346999999999998777 89998886
Q ss_pred CeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCC
Q 040742 387 GLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPD 440 (581)
Q Consensus 387 g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~ 440 (581)
.+.++.||.++|... +|.+.++||+ ..|.+...+.
T Consensus 151 -----PP~~v~FILaTtep~-------------kLlpTIrSRC-q~f~f~~ls~ 185 (700)
T PRK12323 151 -----PPEHVKFILATTDPQ-------------KIPVTVLSRC-LQFNLKQMPP 185 (700)
T ss_pred -----CCCCceEEEEeCChH-------------hhhhHHHHHH-HhcccCCCCh
Confidence 123344444444321 1889999999 5555544443
No 126
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.1e-09 Score=109.30 Aligned_cols=116 Identities=25% Similarity=0.272 Sum_probs=78.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE 368 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~ 368 (581)
.||||+||+|+|||.|++.+|+.+.-.+- ...+..+.+|+.+.-+..-...-.....+.+..|..||+||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 49999999999999999999999987776 44555566776543321110111111223455678899999999998721
Q ss_pred --------------HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC
Q 040742 369 --------------HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV 405 (581)
Q Consensus 369 --------------~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~ 405 (581)
.| +|+..+|--.+.+...|...........|-|+|-.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnIL 358 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNIL 358 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceE
Confidence 45 99999998788876545544444455556666643
No 127
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.1e-10 Score=120.99 Aligned_cols=173 Identities=23% Similarity=0.268 Sum_probs=110.3
Q ss_pred hCccccccHHHHHHHHHHHhcCc-ccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCc
Q 040742 252 ICPSIYGHELVKAGITLALFGGV-RKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGL 329 (581)
Q Consensus 252 ~~p~I~G~e~vk~~lll~l~~g~-~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l 329 (581)
...+|.|.+++|+.+...++-.. ......+.+-+.+| +||.||||+|||.|++++|..+...++ ++ +..|
T Consensus 151 ~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rg---lLLfGPpgtGKtmL~~aiAsE~~atff~iS-----assL 222 (428)
T KOG0740|consen 151 GWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRG---LLLFGPPGTGKTMLAKAIATESGATFFNIS-----ASSL 222 (428)
T ss_pred cccCCcchhhHHHHhhhhhhhcccchHhhhccccccch---hheecCCCCchHHHHHHHHhhhcceEeecc-----HHHh
Confidence 45678899999998865543211 11222222334454 999999999999999999999876655 33 2334
Q ss_pred eeEEEecCccccceeccce-e-eecCceEEEEcCCCCCCHHH--------H-HHHHHHHccEEEEeeCCeeEeeCCCeEE
Q 040742 330 TVAVVKDSVTNDYAFEAGA-M-VLADSGLCCIDEFDKMSAEH--------Q-ALLEAMEQQCVSVAKAGLVASLSARTSV 398 (581)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~-l-~~a~~gil~iDEi~~~~~~~--------~-~L~~~me~~~i~i~k~g~~~~~~~~~~v 398 (581)
+....-+. +..+++-. + -....+|+||||+|++-... . ...+.+-+ ..|.....+.++.|
T Consensus 223 tsK~~Ge~---eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq------~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 223 TSKYVGES---EKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQ------FDGKNSAPDDRVLV 293 (428)
T ss_pred hhhccChH---HHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhh------hccccCCCCCeEEE
Confidence 33332111 11111000 0 01136899999998864321 1 22233322 11444445568999
Q ss_pred EEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhc
Q 040742 399 LAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLH 455 (581)
Q Consensus 399 iaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~ 455 (581)
++|+|.++ . +++++++|| .-+++.+.|+.+....+.+++|..+
T Consensus 294 igaTN~P~---e----------~Dea~~Rrf-~kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 294 IGATNRPW---E----------LDEAARRRF-VKRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred EecCCCch---H----------HHHHHHHHh-hceeeecCCCHHHHHHHHHHHHHhC
Confidence 99999873 2 899999999 6677799999999999999999877
No 128
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.2e-09 Score=117.66 Aligned_cols=166 Identities=25% Similarity=0.280 Sum_probs=94.0
Q ss_pred ccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEE
Q 040742 256 IYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVV 334 (581)
Q Consensus 256 I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~ 334 (581)
+.|.+.+|..+...+.-...... ...+...+....+||+||||||||.||++++..+...+. +.+.. ++...+
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e-~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~-----l~sk~v 317 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPE-LFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE-----LLSKWV 317 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChH-HHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH-----Hhcccc
Confidence 44677777776554432211000 000001223337999999999999999999998876665 44332 222222
Q ss_pred ecCccccceeccceeeecCceEEEEcCCCCCCHHH-----------H-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEee
Q 040742 335 KDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEH-----------Q-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAA 402 (581)
Q Consensus 335 ~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~-----------~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~ 402 (581)
.+....-...-.-+ ......|+||||+|.+.+.. . .|+..|+. + .-..++.||+|+
T Consensus 318 Gesek~ir~~F~~A-~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~---------~--e~~~~v~vi~aT 385 (494)
T COG0464 318 GESEKNIRELFEKA-RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDG---------I--EKAEGVLVIAAT 385 (494)
T ss_pred chHHHHHHHHHHHH-HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcC---------C--CccCceEEEecC
Confidence 11100000000000 01236899999999865331 1 33444421 1 112237799999
Q ss_pred CCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 403 NPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 403 Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
|.+.. +++++++ |||-++. .+.|+.+....|.++.+.
T Consensus 386 N~p~~-------------ld~a~lR~gRfd~~i~-v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 386 NRPDD-------------LDPALLRPGRFDRLIY-VPLPDLEERLEIFKIHLR 424 (494)
T ss_pred CCccc-------------cCHhhcccCccceEee-cCCCCHHHHHHHHHHHhc
Confidence 98732 8999999 9998655 577888887777555444
No 129
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.01 E-value=7.7e-09 Score=119.35 Aligned_cols=164 Identities=15% Similarity=0.208 Sum_probs=94.7
Q ss_pred HHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC--------
Q 040742 244 IFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR-------- 315 (581)
Q Consensus 244 ~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~-------- 315 (581)
+-+.....-...++|++...+.++..|..... -|++|+||||||||++++.++..+..
T Consensus 168 l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~--------------~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~ 233 (857)
T PRK10865 168 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTK--------------NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLK 233 (857)
T ss_pred HHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCc--------------CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhC
Confidence 33344444445699999887777766665421 28999999999999999999988732
Q ss_pred --cEEEecCCCccCCceeEEEecCccccceecccee----eec-CceEEEEcCCCCCCHH--------HH-HHHHHHHcc
Q 040742 316 --GIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAM----VLA-DSGLCCIDEFDKMSAE--------HQ-ALLEAMEQQ 379 (581)
Q Consensus 316 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l----~~a-~~gil~iDEi~~~~~~--------~~-~L~~~me~~ 379 (581)
.++... ...+.+.. ...|.|.-.-..+ ..+ ...|+||||++.+... .+ .|..+++.
T Consensus 234 ~~~~~~l~----l~~l~ag~---~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~- 305 (857)
T PRK10865 234 GRRVLALD----MGALVAGA---KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR- 305 (857)
T ss_pred CCEEEEEe----hhhhhhcc---chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-
Confidence 222110 01111111 0112221111111 111 2459999999987532 22 33333332
Q ss_pred EEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 380 CVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 380 ~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
..+.+|+|+++.+- ...+.++++|.+||+.+++ ..|+.+....|.+.+..
T Consensus 306 --------------g~l~~IgaTt~~e~--------r~~~~~d~al~rRf~~i~v--~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 306 --------------GELHCVGATTLDEY--------RQYIEKDAALERRFQKVFV--AEPSVEDTIAILRGLKE 355 (857)
T ss_pred --------------CCCeEEEcCCCHHH--------HHHhhhcHHHHhhCCEEEe--CCCCHHHHHHHHHHHhh
Confidence 34678899998631 1123488999999987554 66676666666555443
No 130
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.01 E-value=5.6e-10 Score=119.97 Aligned_cols=137 Identities=21% Similarity=0.295 Sum_probs=78.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEecC------CCccCCceeEEEecCccc-cceeccceeeec---CceEEEEc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGN------ATTKAGLTVAVVKDSVTN-DYAFEAGAMVLA---DSGLCCID 360 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~-~~~~~~g~l~~a---~~gil~iD 360 (581)
++||+||||||||++++++++.+...++.... ......+......+.... ...+. .+...+ ...|+|||
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~-~Ar~~a~~g~p~IIfID 296 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQ-RAREKASDGRPVIVFFD 296 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHH-HHHHHhhcCCCceEEEe
Confidence 79999999999999999999987654321000 000011111110000000 00000 000011 24699999
Q ss_pred CCCCCCHH--------HH-----HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc
Q 040742 361 EFDKMSAE--------HQ-----ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS 427 (581)
Q Consensus 361 Ei~~~~~~--------~~-----~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~ 427 (581)
|+|.+... .. .|+..|+ |.. -..++.||+|||.... |++||++
T Consensus 297 EiD~L~~~R~~~~s~d~e~~il~~LL~~LD---------gl~--~~~~ViVI~ATN~~d~-------------LDpALlR 352 (512)
T TIGR03689 297 EMDSIFRTRGSGVSSDVETTVVPQLLSELD---------GVE--SLDNVIVIGASNREDM-------------IDPAILR 352 (512)
T ss_pred hhhhhhcccCCCccchHHHHHHHHHHHHhc---------ccc--cCCceEEEeccCChhh-------------CCHhhcC
Confidence 99976321 11 3334333 111 1235789999998631 8999998
Q ss_pred --cccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 428 --RFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 428 --RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
|||..+. .+.|+.+....|.++.+.
T Consensus 353 pGRfD~~I~-~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 353 PGRLDVKIR-IERPDAEAAADIFSKYLT 379 (512)
T ss_pred ccccceEEE-eCCCCHHHHHHHHHHHhh
Confidence 9998654 578888888888766654
No 131
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.01 E-value=4.4e-10 Score=113.89 Aligned_cols=140 Identities=16% Similarity=0.178 Sum_probs=84.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCc---cccceecccee--eecCceEEEEcCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSV---TNDYAFEAGAM--VLADSGLCCIDEFD 363 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~---~~~~~~~~g~l--~~a~~gil~iDEi~ 363 (581)
..++|+||||||||.+++++++.++..+. +++... .....-++. ...| -.+... ......|+||||||
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL-----~sk~vGEsEk~IR~~F-~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGEL-----ESENAGEPGKLIRQRY-REAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHh-----hcCcCCcHHHHHHHHH-HHHHHHhhccCCCeEEEEehhh
Confidence 47999999999999999999999987655 444322 111111110 0001 011111 11135799999999
Q ss_pred CCCHH---------HH----HHHHHHHcc-EEEEeeCCee--EeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc
Q 040742 364 KMSAE---------HQ----ALLEAMEQQ-CVSVAKAGLV--ASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS 427 (581)
Q Consensus 364 ~~~~~---------~~----~L~~~me~~-~i~i~k~g~~--~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~ 427 (581)
.+... .+ .|+..|+.- .+.+. |.. .....++.||+|+|.+.. |+++|++
T Consensus 223 A~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~--G~w~~~~~~~~V~VIaTTNrpd~-------------LDpALlR 287 (413)
T PLN00020 223 AGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLG--GDWREKEEIPRVPIIVTGNDFST-------------LYAPLIR 287 (413)
T ss_pred hcCCCCCCCCcchHHHHHHHHHHHHhcCCcccccc--ccccccccCCCceEEEeCCCccc-------------CCHhHcC
Confidence 76532 12 244444431 11121 221 123557899999998631 8999999
Q ss_pred --cccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 428 --RFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 428 --RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
|||..+. .|+.+....|.+.++.
T Consensus 288 pGRfDk~i~---lPd~e~R~eIL~~~~r 312 (413)
T PLN00020 288 DGRMEKFYW---APTREDRIGVVHGIFR 312 (413)
T ss_pred CCCCCceeC---CCCHHHHHHHHHHHhc
Confidence 9998653 6888888877665554
No 132
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.00 E-value=1.4e-08 Score=101.13 Aligned_cols=134 Identities=18% Similarity=0.164 Sum_probs=89.5
Q ss_pred ceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEe
Q 040742 354 SGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLV 432 (581)
Q Consensus 354 ~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli 432 (581)
.||+||||.+.++-+.- -|..+||+--- -.+|.|+|....+.... .+...-++|..|+||. +|
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~a--------------PIii~AtNRG~~kiRGT-d~~sPhGIP~DlLDRl-lI 355 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELA--------------PIIILATNRGMTKIRGT-DIESPHGIPLDLLDRL-LI 355 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcccC--------------cEEEEEcCCceeeeccc-CCcCCCCCCHhhhhhe-eE
Confidence 48999999999997766 67788886321 24667778652111100 1222335999999998 76
Q ss_pred EEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHH
Q 040742 433 FILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKY 512 (581)
Q Consensus 433 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~y 512 (581)
+...+++.++....| ....
T Consensus 356 I~t~py~~~EireIi-----~iRa-------------------------------------------------------- 374 (450)
T COG1224 356 ISTRPYSREEIREII-----RIRA-------------------------------------------------------- 374 (450)
T ss_pred EecCCCCHHHHHHHH-----HHhh--------------------------------------------------------
Confidence 666655554443322 1100
Q ss_pred HHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 513 IAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 513 i~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
+.. .-.|+++|.+++...-. .-|.|....|+.-|.-.|+.+++..|+.+||+
T Consensus 375 ----~ee-~i~l~~~Ale~L~~ig~------------etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe 426 (450)
T COG1224 375 ----KEE-DIELSDDALEYLTDIGE------------ETSLRYAVQLLTPASIIAKRRGSKRVEVEDVE 426 (450)
T ss_pred ----hhh-ccccCHHHHHHHHhhch------------hhhHHHHHHhccHHHHHHHHhCCCeeehhHHH
Confidence 000 12589999998887432 34899999999999999999999999999974
No 133
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=4.2e-09 Score=115.47 Aligned_cols=149 Identities=21% Similarity=0.173 Sum_probs=87.6
Q ss_pred HHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEE----EecC
Q 040742 248 IVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIY----VCGN 322 (581)
Q Consensus 248 l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~----~~~~ 322 (581)
+...-..+|+||+.+++.|...+..|.. .| +||+||+|||||++|+.+++.+...-- -+|.
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~~r~--------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDAGRI--------------NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcCCC--------------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 3333345789999999999888887641 17 589999999999999999988752100 0000
Q ss_pred -----C--CccCCceeEEEecCcc--ccceec-----c-ceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeC
Q 040742 323 -----A--TTKAGLTVAVVKDSVT--NDYAFE-----A-GAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKA 386 (581)
Q Consensus 323 -----~--~~~~~l~~~~~~~~~~--~~~~~~-----~-g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~ 386 (581)
. .+..+-......+..+ |.-.++ . -.-..+...|++|||++.|+.+.+ +|+..||+
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-------- 144 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-------- 144 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc--------
Confidence 0 0000000011111110 000000 0 001224578999999999998887 99999986
Q ss_pred CeeEeeCCCeEE-EEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCC
Q 040742 387 GLVASLSARTSV-LAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDK 438 (581)
Q Consensus 387 g~~~~~~~~~~v-iaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~ 438 (581)
.+..+.+ ++|+++. ++.+++.||+ ..+-+...
T Consensus 145 -----pp~~~~fIL~tte~~--------------kll~TI~SRc-~~~~F~~l 177 (584)
T PRK14952 145 -----PPEHLIFIFATTEPE--------------KVLPTIRSRT-HHYPFRLL 177 (584)
T ss_pred -----CCCCeEEEEEeCChH--------------hhHHHHHHhc-eEEEeeCC
Confidence 1223444 4444442 2889999997 54554433
No 134
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.4e-09 Score=119.46 Aligned_cols=167 Identities=25% Similarity=0.322 Sum_probs=98.2
Q ss_pred CccccccHHHHHHHHHHHh--cCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCcc--C
Q 040742 253 CPSIYGHELVKAGITLALF--GGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTK--A 327 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~--~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~--~ 327 (581)
..++.|.+.+|.-|...+- ..-.+-...+-++ -| .+||+||||||||.||+++|..++-.++ ++|..... .
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKi-Pk---GvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~ 385 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKI-PK---GVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFV 385 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcC-cC---ceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhc
Confidence 4578899999988754332 2111100011111 13 5999999999999999999999988776 55544311 1
Q ss_pred CceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHH-------------HHHHHHHHccEEEEeeCCeeEeeCC
Q 040742 328 GLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEH-------------QALLEAMEQQCVSVAKAGLVASLSA 394 (581)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~-------------~~L~~~me~~~i~i~k~g~~~~~~~ 394 (581)
+.-++.+++ +-+-+-.. ...|+||||||...... +.|.+.+-+ + +|.... .
T Consensus 386 g~~asrvr~-------lf~~ar~~-aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~e----m--Dgf~~~--~ 449 (774)
T KOG0731|consen 386 GVGASRVRD-------LFPLARKN-APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVE----M--DGFETS--K 449 (774)
T ss_pred ccchHHHHH-------HHHHhhcc-CCeEEEecccccccccccccccCCCChHHHHHHHHHHHH----h--cCCcCC--C
Confidence 111111111 00111111 25799999998754221 233333311 1 133222 5
Q ss_pred CeEEEEeeCCCCCCCCCccChhhhcCCChhhh--ccccEeEEcCCCCCHHHHHHHHHHHHhhccC
Q 040742 395 RTSVLAAANPVGGHYNRAKTVNENLKMSAALL--SRFDLVFILLDKPDELLDKRVSEHIMSLHSG 457 (581)
Q Consensus 395 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~all--~RFdli~~~~d~~~~~~d~~i~~~il~~~~~ 457 (581)
.+.|+|+||.... +++||+ -|||-.+. .|.|+......| +..|..
T Consensus 450 ~vi~~a~tnr~d~-------------ld~allrpGRfdr~i~-i~~p~~~~r~~i----~~~h~~ 496 (774)
T KOG0731|consen 450 GVIVLAATNRPDI-------------LDPALLRPGRFDRQIQ-IDLPDVKGRASI----LKVHLR 496 (774)
T ss_pred cEEEEeccCCccc-------------cCHHhcCCCcccccee-ccCCchhhhHHH----HHHHhh
Confidence 6889999998642 889999 59998554 688988777766 555554
No 135
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.99 E-value=3e-09 Score=121.74 Aligned_cols=162 Identities=27% Similarity=0.323 Sum_probs=94.3
Q ss_pred ccccccHHHHHHHHHHHhcCccc-ccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 254 PSIYGHELVKAGITLALFGGVRK-HSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~-~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
.+|.|++.+|+.+...+.-.... .... ++..+....+||+||||||||++|+++|..+...+. +.+... ..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~--~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l-----~~ 525 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFE--KMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI-----LS 525 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHH--hcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH-----hh
Confidence 45779999998887655421110 0000 011222236999999999999999999999876654 443221 11
Q ss_pred EEEecCccc-cceeccceeeecCceEEEEcCCCCCCHH------------HH-HHHHHHHccEEEEeeCCeeEeeCCCeE
Q 040742 332 AVVKDSVTN-DYAFEAGAMVLADSGLCCIDEFDKMSAE------------HQ-ALLEAMEQQCVSVAKAGLVASLSARTS 397 (581)
Q Consensus 332 ~~~~~~~~~-~~~~~~g~l~~a~~gil~iDEi~~~~~~------------~~-~L~~~me~~~i~i~k~g~~~~~~~~~~ 397 (581)
..+.+.... ...+. .......+|+||||+|.+.+. .. .|+..|+. . .-..++.
T Consensus 526 ~~vGese~~i~~~f~--~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg---------~--~~~~~v~ 592 (733)
T TIGR01243 526 KWVGESEKAIREIFR--KARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG---------I--QELSNVV 592 (733)
T ss_pred cccCcHHHHHHHHHH--HHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhc---------c--cCCCCEE
Confidence 111000000 00000 001123589999999876321 11 34444442 1 1134688
Q ss_pred EEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHH
Q 040742 398 VLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSE 449 (581)
Q Consensus 398 viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~ 449 (581)
||+|+|.+. . +++++++ |||.++. .+.|+.+....|.+
T Consensus 593 vI~aTn~~~---~----------ld~allRpgRfd~~i~-v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 593 VIAATNRPD---I----------LDPALLRPGRFDRLIL-VPPPDEEARKEIFK 632 (733)
T ss_pred EEEeCCChh---h----------CCHhhcCCCccceEEE-eCCcCHHHHHHHHH
Confidence 999999863 1 8999996 9998654 67888888777744
No 136
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.99 E-value=2.5e-09 Score=119.96 Aligned_cols=129 Identities=28% Similarity=0.402 Sum_probs=78.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCcc--CCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTK--AGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSA 367 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~--~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~ 367 (581)
++||+||||||||+++++++..++..++ +++..... .+......+ .. +.. .......|+||||+|.+..
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~----~~--f~~--a~~~~P~IifIDEiD~l~~ 258 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVR----DM--FEQ--AKKAAPCIIFIDEIDAVGR 258 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHH----HH--HHH--HHhcCCcEEEehhHhhhhh
Confidence 6999999999999999999999877665 44432210 000000000 00 000 0011357999999998732
Q ss_pred H-----------H-HH---HHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--ccc
Q 040742 368 E-----------H-QA---LLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFD 430 (581)
Q Consensus 368 ~-----------~-~~---L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFd 430 (581)
. . +. |+..|+. . .-+.++.+|||+|.+.. +++++++ |||
T Consensus 259 ~r~~~~~g~~~~~~~~ln~lL~~mdg---------~--~~~~~vivIaaTN~p~~-------------lD~Al~RpgRfd 314 (644)
T PRK10733 259 QRGAGLGGGHDEREQTLNQMLVEMDG---------F--EGNEGIIVIAATNRPDV-------------LDPALLRPGRFD 314 (644)
T ss_pred ccCCCCCCCchHHHHHHHHHHHhhhc---------c--cCCCCeeEEEecCChhh-------------cCHHHhCCcccc
Confidence 1 1 12 2333331 1 12456889999998631 8899996 999
Q ss_pred EeEEcCCCCCHHHHHHHHHHHH
Q 040742 431 LVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 431 li~~~~d~~~~~~d~~i~~~il 452 (581)
-.+. .+.|+.+....|.+..+
T Consensus 315 r~i~-v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 315 RQVV-VGLPDVRGREQILKVHM 335 (644)
T ss_pred eEEE-cCCCCHHHHHHHHHHHh
Confidence 8665 67888877777644433
No 137
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=9.3e-09 Score=113.06 Aligned_cols=138 Identities=23% Similarity=0.279 Sum_probs=82.3
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEE----ecCC------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYV----CGNA------ 323 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~----~~~~------ 323 (581)
.+|+||+.+++.|...+..+... -.+||+||+|+|||++|+.+++.+...... ++..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~-------------Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLH-------------HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCC-------------eEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 46899999999998888876311 147999999999999999999986431110 0000
Q ss_pred --CccCCceeEEEecCc--ccc----ceeccc--eeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEee
Q 040742 324 --TTKAGLTVAVVKDSV--TND----YAFEAG--AMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASL 392 (581)
Q Consensus 324 --~~~~~l~~~~~~~~~--~~~----~~~~~g--~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~ 392 (581)
....++. ..+.. .+. -.+... .-..+...|++|||+++++.... +|+..||+-
T Consensus 83 ~~g~~~Dvl---EidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP------------- 146 (709)
T PRK08691 83 DAGRYVDLL---EIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP------------- 146 (709)
T ss_pred hccCccceE---EEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-------------
Confidence 0001111 11110 010 000000 00123457999999999998766 899999851
Q ss_pred CCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEE
Q 040742 393 SARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFI 434 (581)
Q Consensus 393 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~ 434 (581)
+..+.+|.++|... ++...++||+ +.|.
T Consensus 147 p~~v~fILaTtd~~-------------kL~~TIrSRC-~~f~ 174 (709)
T PRK08691 147 PEHVKFILATTDPH-------------KVPVTVLSRC-LQFV 174 (709)
T ss_pred CCCcEEEEEeCCcc-------------ccchHHHHHH-hhhh
Confidence 22344555555332 1778899998 4343
No 138
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=2.4e-09 Score=116.42 Aligned_cols=143 Identities=18% Similarity=0.218 Sum_probs=84.1
Q ss_pred HHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE----EecC
Q 040742 247 QIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY----VCGN 322 (581)
Q Consensus 247 ~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~----~~~~ 322 (581)
+....-..+++||+.+++.+.-++..+... -.+||+||||+|||++|+.+|+.+...-. .+|.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~-------------hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILNNKLT-------------HAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCC-------------ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 333444457889999999988887765311 14899999999999999999998742111 1111
Q ss_pred CC--------ccCCceeEEEecCcc--c--cc--eec--cceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEee
Q 040742 323 AT--------TKAGLTVAVVKDSVT--N--DY--AFE--AGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAK 385 (581)
Q Consensus 323 ~~--------~~~~l~~~~~~~~~~--~--~~--~~~--~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k 385 (581)
.. ...++. ..++.+ + .. ... ...-..++.+|++|||++.|+...+ +|+..||+-
T Consensus 76 C~sCr~i~~~~h~Dii---eIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP------ 146 (605)
T PRK05896 76 CSVCESINTNQSVDIV---ELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP------ 146 (605)
T ss_pred cHHHHHHHcCCCCceE---EeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC------
Confidence 00 001110 001100 0 00 000 0001224578999999999998777 999999862
Q ss_pred CCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccE
Q 040742 386 AGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDL 431 (581)
Q Consensus 386 ~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdl 431 (581)
+..+.+|.+++... .+.+++++|+..
T Consensus 147 -------p~~tvfIL~Tt~~~-------------KLl~TI~SRcq~ 172 (605)
T PRK05896 147 -------PKHVVFIFATTEFQ-------------KIPLTIISRCQR 172 (605)
T ss_pred -------CCcEEEEEECCChH-------------hhhHHHHhhhhh
Confidence 22334444443221 288899999943
No 139
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.4e-09 Score=115.64 Aligned_cols=167 Identities=25% Similarity=0.330 Sum_probs=97.9
Q ss_pred CccccccHHHHHHHHHHHhcCc--ccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCC--ccC
Q 040742 253 CPSIYGHELVKAGITLALFGGV--RKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNAT--TKA 327 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~--~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~--~~~ 327 (581)
.-++.|.+.+|..+...+---. .+-..-+.+++ -.+||+||||||||.||+++|..++..++ ++|... -..
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiP----kGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV 224 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIP----KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 224 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccc----cceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc
Confidence 3567788888887765432111 00000011111 26999999999999999999999987766 555443 112
Q ss_pred CceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHH------------HHHHHHHHccEEEEeeCCeeEeeCCC
Q 040742 328 GLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEH------------QALLEAMEQQCVSVAKAGLVASLSAR 395 (581)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~------------~~L~~~me~~~i~i~k~g~~~~~~~~ 395 (581)
|.-++.+++.. .++. .. ...|+||||+|...... |.|.+.+-+ +. |.. -+..
T Consensus 225 GvGAsRVRdLF-----~qAk--k~-aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvE----mD--GF~--~~~g 288 (596)
T COG0465 225 GVGASRVRDLF-----EQAK--KN-APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE----MD--GFG--GNEG 288 (596)
T ss_pred CCCcHHHHHHH-----HHhh--cc-CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhh----hc--cCC--CCCc
Confidence 22233332221 1111 11 14799999998865432 233333311 11 222 2456
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhh--ccccEeEEcCCCCCHHHHHHHHHHHHhhccC
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALL--SRFDLVFILLDKPDELLDKRVSEHIMSLHSG 457 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all--~RFdli~~~~d~~~~~~d~~i~~~il~~~~~ 457 (581)
+.++||||.+.- +++||+ .|||-. ++.+.||-...++| +..|..
T Consensus 289 viviaaTNRpdV-------------lD~ALlRpgRFDRq-I~V~~PDi~gRe~I----lkvH~~ 334 (596)
T COG0465 289 VIVIAATNRPDV-------------LDPALLRPGRFDRQ-ILVELPDIKGREQI----LKVHAK 334 (596)
T ss_pred eEEEecCCCccc-------------chHhhcCCCCccee-eecCCcchhhHHHH----HHHHhh
Confidence 889999998631 788999 699884 45688886665555 445544
No 140
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.96 E-value=1.7e-08 Score=105.01 Aligned_cols=47 Identities=28% Similarity=0.325 Sum_probs=37.9
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+++|++.++..+...+..+.. .|+||+||||||||++|+++++.+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~--------------~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNL--------------PHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCC--------------ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4577999998888776655421 1899999999999999999998763
No 141
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=9.4e-09 Score=113.24 Aligned_cols=146 Identities=23% Similarity=0.252 Sum_probs=86.1
Q ss_pred HHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEEEecC-
Q 040742 245 FRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIYVCGN- 322 (581)
Q Consensus 245 ~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~~~~~- 322 (581)
|.+....-..+++||+.+++.+..++..+.. .| +||+||+|||||++|+.+++.+...-...+.
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~--------------~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~p 72 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQGKI--------------SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEP 72 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHcCCC--------------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 3333444445789999999999888887631 15 7889999999999999999887421100000
Q ss_pred ---C--------CccCCceeEEEecCcc--c-----cceecc-ceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEE
Q 040742 323 ---A--------TTKAGLTVAVVKDSVT--N-----DYAFEA-GAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVS 382 (581)
Q Consensus 323 ---~--------~~~~~l~~~~~~~~~~--~-----~~~~~~-g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~ 382 (581)
- .+..++ ...++.+ + ...-.. -.-..+...|++|||+++|+.... +|+..||+-
T Consensus 73 C~~C~~C~~i~~g~~~dv---~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep--- 146 (559)
T PRK05563 73 CNECEICKAITNGSLMDV---IEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP--- 146 (559)
T ss_pred CCccHHHHHHhcCCCCCe---EEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC---
Confidence 0 000111 1111110 0 000000 001234567999999999998776 899888752
Q ss_pred EeeCCeeEeeCCCeEE-EEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEc
Q 040742 383 VAKAGLVASLSARTSV-LAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFIL 435 (581)
Q Consensus 383 i~k~g~~~~~~~~~~v-iaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~ 435 (581)
|..+.+ ++|+++. ++.++++||+. .+.+
T Consensus 147 ----------p~~~ifIlatt~~~--------------ki~~tI~SRc~-~~~f 175 (559)
T PRK05563 147 ----------PAHVIFILATTEPH--------------KIPATILSRCQ-RFDF 175 (559)
T ss_pred ----------CCCeEEEEEeCChh--------------hCcHHHHhHhe-EEec
Confidence 233444 4454442 18889999994 3443
No 142
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.95 E-value=7e-09 Score=101.52 Aligned_cols=171 Identities=23% Similarity=0.304 Sum_probs=99.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC----cEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR----GIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~ 366 (581)
+++|+|+||||||++|+++++.+.. .+|++........ ..+ + .. ....++++|||++.++
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~~-~--~~--~~~~~lLvIDdi~~l~ 103 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD-----------PEV-L--EG--LEQADLVCLDDVEAIA 103 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-----------HHH-H--hh--cccCCEEEEeChhhhc
Confidence 8999999999999999999987631 2233322211000 000 0 00 1224699999999998
Q ss_pred HHH--H-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCC-hhhhcccc--EeEEcCCCCC
Q 040742 367 AEH--Q-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMS-AALLSRFD--LVFILLDKPD 440 (581)
Q Consensus 367 ~~~--~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~-~all~RFd--li~~~~d~~~ 440 (581)
... + .|+.+++... ..+..+|.|+|.....+. +. +.|.+||. ..+.++ .++
T Consensus 104 ~~~~~~~~L~~~l~~~~------------~~~~~iIits~~~~~~~~----------~~~~~L~~r~~~~~~i~l~-~l~ 160 (226)
T TIGR03420 104 GQPEWQEALFHLYNRVR------------EAGGRLLIAGRAAPAQLP----------LRLPDLRTRLAWGLVFQLP-PLS 160 (226)
T ss_pred CChHHHHHHHHHHHHHH------------HcCCeEEEECCCChHHCC----------cccHHHHHHHhcCeeEecC-CCC
Confidence 532 4 6777665311 011235566665422222 33 78899985 344443 344
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 040742 441 ELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFV 520 (581)
Q Consensus 441 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i 520 (581)
++.+..+ ++.+.. +.
T Consensus 161 ~~e~~~~-------------------------------------------------------------l~~~~~--~~-- 175 (226)
T TIGR03420 161 DEEKIAA-------------------------------------------------------------LQSRAA--RR-- 175 (226)
T ss_pred HHHHHHH-------------------------------------------------------------HHHHHH--Hc--
Confidence 4443333 222221 11
Q ss_pred CCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCccc
Q 040742 521 FPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAED 579 (581)
Q Consensus 521 ~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~D 579 (581)
...+++++.+.|..+ ++-++|+|..++..+.+.|.-..+ .|+.+-
T Consensus 176 ~~~~~~~~l~~L~~~-------------~~gn~r~L~~~l~~~~~~~~~~~~-~i~~~~ 220 (226)
T TIGR03420 176 GLQLPDEVADYLLRH-------------GSRDMGSLMALLDALDRASLAAKR-KITIPF 220 (226)
T ss_pred CCCCCHHHHHHHHHh-------------ccCCHHHHHHHHHHHHHHHHHhCC-CCCHHH
Confidence 235888888888873 245899999999998876665554 566543
No 143
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.94 E-value=4e-09 Score=122.11 Aligned_cols=212 Identities=14% Similarity=0.201 Sum_probs=118.1
Q ss_pred HHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE---EecC
Q 040742 246 RQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY---VCGN 322 (581)
Q Consensus 246 ~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~---~~~~ 322 (581)
+...+.-...++|++...+.+...|..... -|++|+||||||||++++.++..+..... ..+.
T Consensus 165 ~~~~~~~~~~~igr~~ei~~~~~~l~r~~~--------------~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~ 230 (852)
T TIGR03346 165 ERAREGKLDPVIGRDEEIRRTIQVLSRRTK--------------NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNK 230 (852)
T ss_pred HHhhCCCCCcCCCcHHHHHHHHHHHhcCCC--------------CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCC
Confidence 333443344589999988888777765421 18999999999999999999987632100 0000
Q ss_pred CC---ccCCceeEEEecCccccceeccce-e---ee-cCceEEEEcCCCCCCH--------HHH-HHHHHHHccEEEEee
Q 040742 323 AT---TKAGLTVAVVKDSVTNDYAFEAGA-M---VL-ADSGLCCIDEFDKMSA--------EHQ-ALLEAMEQQCVSVAK 385 (581)
Q Consensus 323 ~~---~~~~l~~~~~~~~~~~~~~~~~g~-l---~~-a~~gil~iDEi~~~~~--------~~~-~L~~~me~~~i~i~k 385 (581)
.. ....+.+.. ...|.+.-.-.. + .. ..+.|+||||++.+.. +.. .|..+++.
T Consensus 231 ~~~~l~~~~l~a~~---~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~------- 300 (852)
T TIGR03346 231 RLLALDMGALIAGA---KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR------- 300 (852)
T ss_pred eEEEeeHHHHhhcc---hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-------
Confidence 00 001111100 001222100000 0 01 1256999999998752 112 22222222
Q ss_pred CCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccc
Q 040742 386 AGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAA 465 (581)
Q Consensus 386 ~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~ 465 (581)
.++.+|+|+|+.+- ...+.++++|.+||..+. .+.|+.+....|.+.+...+...+
T Consensus 301 --------g~i~~IgaTt~~e~--------r~~~~~d~al~rRf~~i~--v~~p~~~~~~~iL~~~~~~~e~~~------ 356 (852)
T TIGR03346 301 --------GELHCIGATTLDEY--------RKYIEKDAALERRFQPVF--VDEPTVEDTISILRGLKERYEVHH------ 356 (852)
T ss_pred --------CceEEEEeCcHHHH--------HHHhhcCHHHHhcCCEEE--eCCCCHHHHHHHHHHHHHHhcccc------
Confidence 34678888887521 112348999999998754 366777666666555444322111
Q ss_pred cCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCc-CCHHHHHHHHHHHHHHh
Q 040742 466 KKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPR-MTKPAAEILQKFYLKLR 540 (581)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~-ls~~a~~~i~~~y~~lR 540 (581)
.-.++.+.+..-+.++.+++.-. |++.|.++|...-...|
T Consensus 357 -----------------------------------~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~ 397 (852)
T TIGR03346 357 -----------------------------------GVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIR 397 (852)
T ss_pred -----------------------------------CCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHH
Confidence 11245556777777777766554 77888888877654443
No 144
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=6.2e-09 Score=110.49 Aligned_cols=47 Identities=26% Similarity=0.227 Sum_probs=39.4
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+|+||+.+++.+..++..|.. .| +||+||||+|||++|+.+|+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~--------------~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRV--------------GHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCc--------------ceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999988877776631 14 99999999999999999998874
No 145
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.94 E-value=2.2e-08 Score=98.12 Aligned_cols=114 Identities=19% Similarity=0.282 Sum_probs=66.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC----CcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP----RGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~ 366 (581)
+++|+|+||||||+||+++++.+. ..++++...... .. ......++++|||++.++
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~--------------~~------~~~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL--------------AF------DFDPEAELYAVDDVERLD 103 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH--------------HH------hhcccCCEEEEeChhhcC
Confidence 799999999999999999998751 122233221100 00 012246799999999998
Q ss_pred HHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhcccc--EeEEcCCCCCHHH
Q 040742 367 AEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD--LVFILLDKPDELL 443 (581)
Q Consensus 367 ~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFd--li~~~~d~~~~~~ 443 (581)
...+ .|+..++... ......++.+++.....+. +.+.|.+||. ..+.++ .++++.
T Consensus 104 ~~~~~~L~~~~~~~~-----------~~~~~~vl~~~~~~~~~~~----------l~~~L~sr~~~~~~i~l~-pl~~~~ 161 (227)
T PRK08903 104 DAQQIALFNLFNRVR-----------AHGQGALLVAGPAAPLALP----------LREDLRTRLGWGLVYELK-PLSDAD 161 (227)
T ss_pred chHHHHHHHHHHHHH-----------HcCCcEEEEeCCCCHHhCC----------CCHHHHHHHhcCeEEEec-CCCHHH
Confidence 7666 7877775421 0112334444443221122 6688999983 444444 444433
Q ss_pred HHH
Q 040742 444 DKR 446 (581)
Q Consensus 444 d~~ 446 (581)
+..
T Consensus 162 ~~~ 164 (227)
T PRK08903 162 KIA 164 (227)
T ss_pred HHH
Confidence 433
No 146
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=8.2e-09 Score=113.65 Aligned_cols=143 Identities=22% Similarity=0.213 Sum_probs=83.8
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEE--EecCCC------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIY--VCGNAT------ 324 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~--~~~~~~------ 324 (581)
.+|+||+.+++.|.-.+..+.. .| +||+|++|+|||++|+.+++.+...-. ..|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl--------------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C 81 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRL--------------HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC 81 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------------CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence 4588999999999888887641 15 499999999999999999988742100 000000
Q ss_pred ---------ccCCceeEEEecCc--ccc--c--eecc--ceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeC
Q 040742 325 ---------TKAGLTVAVVKDSV--TND--Y--AFEA--GAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKA 386 (581)
Q Consensus 325 ---------~~~~l~~~~~~~~~--~~~--~--~~~~--g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~ 386 (581)
...++. ..+.. .+. . .++. -.-......|++|||+++|+.... +|+..||+-
T Consensus 82 ~~C~~i~~g~h~D~~---eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP------- 151 (618)
T PRK14951 82 QACRDIDSGRFVDYT---ELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP------- 151 (618)
T ss_pred HHHHHHHcCCCCcee---ecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC-------
Confidence 000111 00110 000 0 0000 000112356999999999998776 888888751
Q ss_pred CeeEeeCCCeEEE-EeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCH
Q 040742 387 GLVASLSARTSVL-AAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDE 441 (581)
Q Consensus 387 g~~~~~~~~~~vi-aa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~ 441 (581)
+..+.+| +|+++.. +...+++|+ .+|.+...+.+
T Consensus 152 ------P~~~~fIL~Ttd~~k--------------il~TIlSRc-~~~~f~~Ls~e 186 (618)
T PRK14951 152 ------PEYLKFVLATTDPQK--------------VPVTVLSRC-LQFNLRPMAPE 186 (618)
T ss_pred ------CCCeEEEEEECCchh--------------hhHHHHHhc-eeeecCCCCHH
Confidence 2334444 4444432 677899999 65665444433
No 147
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.93 E-value=7.4e-09 Score=119.59 Aligned_cols=202 Identities=14% Similarity=0.173 Sum_probs=122.0
Q ss_pred hCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCC----------CcEE-Ee
Q 040742 252 ICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSP----------RGIY-VC 320 (581)
Q Consensus 252 ~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~----------~~~~-~~ 320 (581)
-...++|.+...+.++..|..... -|++|+||||||||++++.+|..+. ..++ ++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~--------------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTK--------------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHccccc--------------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 345589999988888776654321 1899999999999999999998753 2222 11
Q ss_pred cCCCccCCceeEEEecCccccceeccceee----ecCceEEEEcCCCCCCH--------HHH-HHHHHHHccEEEEeeCC
Q 040742 321 GNATTKAGLTVAVVKDSVTNDYAFEAGAMV----LADSGLCCIDEFDKMSA--------EHQ-ALLEAMEQQCVSVAKAG 387 (581)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~----~a~~gil~iDEi~~~~~--------~~~-~L~~~me~~~i~i~k~g 387 (581)
. ..+.+.. ...|+|.-.-..+. ...+.|+||||++.+-. +.. .|..++..|
T Consensus 243 ~-----~~l~ag~---~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-------- 306 (821)
T CHL00095 243 I-----GLLLAGT---KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-------- 306 (821)
T ss_pred H-----HHHhccC---CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--------
Confidence 1 1111110 11233321111111 12356899999976532 122 344455433
Q ss_pred eeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccC
Q 040742 388 LVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKK 467 (581)
Q Consensus 388 ~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 467 (581)
.+.+|+|+++.+- ...+..+++|.+||..+.+ +.|+.+....|.+.+...+.....
T Consensus 307 -------~l~~IgaTt~~ey--------~~~ie~D~aL~rRf~~I~v--~ep~~~e~~aILr~l~~~~e~~~~------- 362 (821)
T CHL00095 307 -------ELQCIGATTLDEY--------RKHIEKDPALERRFQPVYV--GEPSVEETIEILFGLRSRYEKHHN------- 362 (821)
T ss_pred -------CcEEEEeCCHHHH--------HHHHhcCHHHHhcceEEec--CCCCHHHHHHHHHHHHHHHHHHcC-------
Confidence 3567888887521 1123378999999976433 556766666776666554322110
Q ss_pred cccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCc-CCHHHHHHHHHHHHHHhh
Q 040742 468 PRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPR-MTKPAAEILQKFYLKLRD 541 (581)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~-ls~~a~~~i~~~y~~lR~ 541 (581)
-.++.+.+.....++.+++.-. +++.|.++|.......|-
T Consensus 363 ----------------------------------v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~ 403 (821)
T CHL00095 363 ----------------------------------LSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRL 403 (821)
T ss_pred ----------------------------------CCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHh
Confidence 1266777888888888776544 788899999887766553
No 148
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=1.5e-08 Score=109.84 Aligned_cols=153 Identities=22% Similarity=0.206 Sum_probs=86.3
Q ss_pred HHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceee-EEeCCCCChHHHHHHHHHHHCCCc--EE-EecCC
Q 040742 248 IVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHV-IVVGDPGLGKSQLLQAAAAVSPRG--IY-VCGNA 323 (581)
Q Consensus 248 l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~i-LL~G~pGtGKT~la~~la~~~~~~--~~-~~~~~ 323 (581)
+...-..+|+||+.++..|...+..+.. .|. ||+||||||||++|+++++.+... .. .+|.-
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~~~l--------------~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQGRL--------------GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHcCCC--------------CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 3333445799999999988887776531 155 999999999999999999887420 00 01100
Q ss_pred --------CccCCceeEEEecCccc-----cceeccce-eeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCe
Q 040742 324 --------TTKAGLTVAVVKDSVTN-----DYAFEAGA-MVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGL 388 (581)
Q Consensus 324 --------~~~~~l~~~~~~~~~~~-----~~~~~~g~-l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~ 388 (581)
.+..++.. +......+ ...-.... -......+++|||++.++.+.+ .|+..|++.
T Consensus 74 ~sc~~i~~~~h~dv~e-l~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep--------- 143 (504)
T PRK14963 74 ESCLAVRRGAHPDVLE-IDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP--------- 143 (504)
T ss_pred hhhHHHhcCCCCceEE-ecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC---------
Confidence 00011110 00000000 00000000 1224567999999999998766 888888762
Q ss_pred eEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHH
Q 040742 389 VASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELL 443 (581)
Q Consensus 389 ~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~ 443 (581)
+..+.+|.++|... .+.+++.+|+. .+-+. .++.+.
T Consensus 144 ----~~~t~~Il~t~~~~-------------kl~~~I~SRc~-~~~f~-~ls~~e 179 (504)
T PRK14963 144 ----PEHVIFILATTEPE-------------KMPPTILSRTQ-HFRFR-RLTEEE 179 (504)
T ss_pred ----CCCEEEEEEcCChh-------------hCChHHhcceE-EEEec-CCCHHH
Confidence 12334444444321 17889999984 34433 344433
No 149
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.92 E-value=2.2e-08 Score=103.29 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=89.5
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEE-eCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIV-VGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL-~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
.+++|++.++..+...+-.|.. .|++| +||||+|||++++++++.....+. +++.. ...+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~--------------~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~~-- 83 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRI--------------PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRIDF-- 83 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCC--------------CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHHH--
Confidence 4588999998887776665431 15555 899999999999999988754433 33322 00000
Q ss_pred EEEecCccccceeccceeeecCceEEEEcCCCCC-CHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCC
Q 040742 332 AVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKM-SAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHY 409 (581)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~-~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~ 409 (581)
.++.. ..+. ... -..+...+++|||++.+ ..+.+ .|...|+.. +.++.+|.++|...
T Consensus 84 --i~~~l-~~~~-~~~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-------------~~~~~~Ilt~n~~~--- 142 (316)
T PHA02544 84 --VRNRL-TRFA-STV-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-------------SKNCSFIITANNKN--- 142 (316)
T ss_pred --HHHHH-HHHH-Hhh-cccCCCeEEEEECcccccCHHHHHHHHHHHHhc-------------CCCceEEEEcCChh---
Confidence 00000 0000 000 01235689999999999 55555 677777741 23467888888642
Q ss_pred CCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHH
Q 040742 410 NRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHI 451 (581)
Q Consensus 410 ~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~i 451 (581)
.+.+++.+||..+. .+.|+.+....+...+
T Consensus 143 ----------~l~~~l~sR~~~i~--~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 143 ----------GIIEPLRSRCRVID--FGVPTKEEQIEMMKQM 172 (316)
T ss_pred ----------hchHHHHhhceEEE--eCCCCHHHHHHHHHHH
Confidence 17899999996433 3555555554454443
No 150
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.92 E-value=2e-08 Score=103.58 Aligned_cols=133 Identities=23% Similarity=0.291 Sum_probs=76.6
Q ss_pred cccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcE----EEecCCCccCCce
Q 040742 255 SIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGI----YVCGNATTKAGLT 330 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~----~~~~~~~~~~~l~ 330 (581)
+++|++.++..+...+-.+.. .|++|+||||||||++++++++.+.... ++.-......+.
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~~--------------~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~- 82 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKNM--------------PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGI- 82 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCCC--------------CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccch-
Confidence 467999988888777655421 2799999999999999999998763211 110000000000
Q ss_pred eEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCC
Q 040742 331 VAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHY 409 (581)
Q Consensus 331 ~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~ 409 (581)
....+.. ..+ ....+...+...+++|||++.+..+.+ .|+..|+.. +..+.+|.++|...
T Consensus 83 -~~~~~~i-~~~-~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-------------~~~~~lIl~~~~~~--- 143 (319)
T PRK00440 83 -DVIRNKI-KEF-ARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-------------SQNTRFILSCNYSS--- 143 (319)
T ss_pred -HHHHHHH-HHH-HhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-------------CCCCeEEEEeCCcc---
Confidence 0000000 000 000111113457999999999998776 888888642 12244555666431
Q ss_pred CCccChhhhcCCChhhhccccE
Q 040742 410 NRAKTVNENLKMSAALLSRFDL 431 (581)
Q Consensus 410 ~~~~~~~~~~~l~~all~RFdl 431 (581)
.+.+++.+|+..
T Consensus 144 ----------~l~~~l~sr~~~ 155 (319)
T PRK00440 144 ----------KIIDPIQSRCAV 155 (319)
T ss_pred ----------ccchhHHHHhhe
Confidence 166789999854
No 151
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=1e-08 Score=112.11 Aligned_cols=139 Identities=25% Similarity=0.275 Sum_probs=82.0
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEEEe----cCC-----
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIYVC----GNA----- 323 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~~~----~~~----- 323 (581)
.+|+||+.+++.+..++..+.. .| +||+||||+|||++|+.+++.+....... |.-
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~--------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~ 81 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRL--------------HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLE 81 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------------CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 4588999999998888876631 15 58999999999999999999874311110 000
Q ss_pred ---CccCCceeEEEecCc--cc----cceecc--ceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEe
Q 040742 324 ---TTKAGLTVAVVKDSV--TN----DYAFEA--GAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVAS 391 (581)
Q Consensus 324 ---~~~~~l~~~~~~~~~--~~----~~~~~~--g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~ 391 (581)
....++.. .+.. .+ +..+.. ..-......|++|||+++|+...+ +|+..||+-
T Consensus 82 i~~~~~~d~~e---i~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep------------ 146 (527)
T PRK14969 82 IDSGRFVDLIE---VDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP------------ 146 (527)
T ss_pred HhcCCCCceeE---eeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC------------
Confidence 00011110 0100 00 000000 001123457999999999998776 899999862
Q ss_pred eCCCeE-EEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCC
Q 040742 392 LSARTS-VLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLD 437 (581)
Q Consensus 392 ~~~~~~-viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d 437 (581)
+..+. |++|+++.. +...++||+ .++-+..
T Consensus 147 -p~~~~fIL~t~d~~k--------------il~tI~SRc-~~~~f~~ 177 (527)
T PRK14969 147 -PEHVKFILATTDPQK--------------IPVTVLSRC-LQFNLKQ 177 (527)
T ss_pred -CCCEEEEEEeCChhh--------------CchhHHHHH-HHHhcCC
Confidence 22333 444545432 667899998 4444433
No 152
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=1.4e-08 Score=115.66 Aligned_cols=141 Identities=20% Similarity=0.188 Sum_probs=84.3
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcE----EEecC------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGI----YVCGN------ 322 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~----~~~~~------ 322 (581)
.+|+||+.+++.|...+..+.. .| +||+|++|+|||++++.+++.+...- .-+|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri--------------~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~ 80 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRI--------------NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVA 80 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC--------------CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHH
Confidence 4688999999999888887631 16 79999999999999999999874210 00110
Q ss_pred ----CCccCCceeEEEecCcc-ccc----eecc---ceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCee
Q 040742 323 ----ATTKAGLTVAVVKDSVT-NDY----AFEA---GAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLV 389 (581)
Q Consensus 323 ----~~~~~~l~~~~~~~~~~-~~~----~~~~---g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~ 389 (581)
.....++. ..+..+ ... .+.. ..-......|++|||+++|+...+ .|+..||+-
T Consensus 81 ~~~g~~~~~dv~---eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp---------- 147 (824)
T PRK07764 81 LAPGGPGSLDVT---EIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP---------- 147 (824)
T ss_pred HHcCCCCCCcEE---EecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC----------
Confidence 00011111 111100 000 0000 001223567999999999998887 999999861
Q ss_pred EeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCC
Q 040742 390 ASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDK 438 (581)
Q Consensus 390 ~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~ 438 (581)
+..+.+|.+++... +|.++|.||+ .++.+...
T Consensus 148 ---P~~~~fIl~tt~~~-------------kLl~TIrSRc-~~v~F~~l 179 (824)
T PRK07764 148 ---PEHLKFIFATTEPD-------------KVIGTIRSRT-HHYPFRLV 179 (824)
T ss_pred ---CCCeEEEEEeCChh-------------hhhHHHHhhe-eEEEeeCC
Confidence 22344444444321 1778999998 44544333
No 153
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=2.3e-08 Score=110.62 Aligned_cols=139 Identities=21% Similarity=0.252 Sum_probs=83.6
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEEE----ecCC-----
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIYV----CGNA----- 323 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~~----~~~~----- 323 (581)
.+|+||+.+++.+...+..|... | +||+||+|+|||++++.+++.+...-.. +|..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~--------------hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~ 81 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVA--------------HAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVE 81 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCC--------------eEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHH
Confidence 46899999999999888776311 4 6999999999999999999987421000 0000
Q ss_pred ---CccCCceeEEEecCccc----cc-eecc--c-eeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEe
Q 040742 324 ---TTKAGLTVAVVKDSVTN----DY-AFEA--G-AMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVAS 391 (581)
Q Consensus 324 ---~~~~~l~~~~~~~~~~~----~~-~~~~--g-~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~ 391 (581)
.+..++. ..+..+. .. .+.. . .-..+...|++|||+++|+...+ +|+..||+-
T Consensus 82 i~~g~~~d~~---eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep------------ 146 (576)
T PRK14965 82 ITEGRSVDVF---EIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP------------ 146 (576)
T ss_pred HhcCCCCCee---eeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC------------
Confidence 0001111 1111000 00 0000 0 01224568999999999998877 999999861
Q ss_pred eCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcC
Q 040742 392 LSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILL 436 (581)
Q Consensus 392 ~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~ 436 (581)
+..+.+|.++|... ++.++++||+ ..+-+.
T Consensus 147 -p~~~~fIl~t~~~~-------------kl~~tI~SRc-~~~~f~ 176 (576)
T PRK14965 147 -PPHVKFIFATTEPH-------------KVPITILSRC-QRFDFR 176 (576)
T ss_pred -CCCeEEEEEeCChh-------------hhhHHHHHhh-hhhhcC
Confidence 23344444444321 1888999998 434433
No 154
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=2e-08 Score=110.02 Aligned_cols=144 Identities=21% Similarity=0.227 Sum_probs=83.5
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEec----CC------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCG----NA------ 323 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~----~~------ 323 (581)
.+|+||+.+++.|..++..+... -++||+||||||||++|+.+++.+...-...+ .-
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~-------------ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i 82 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVA-------------PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKV 82 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCC-------------ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHH
Confidence 46789999998888888765311 27889999999999999999998853110000 00
Q ss_pred --CccCCceeEEEecCc--ccc---ceec--cc-eeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEee
Q 040742 324 --TTKAGLTVAVVKDSV--TND---YAFE--AG-AMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASL 392 (581)
Q Consensus 324 --~~~~~l~~~~~~~~~--~~~---~~~~--~g-~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~ 392 (581)
....++. ..+.. .+. ..+. .. .-......|++|||+++|+.+.+ .|+..||+-
T Consensus 83 ~~g~hpDv~---eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP------------- 146 (624)
T PRK14959 83 TQGMHVDVV---EIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP------------- 146 (624)
T ss_pred hcCCCCceE---EEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc-------------
Confidence 0001111 01110 000 0000 00 01123457999999999998877 899999862
Q ss_pred CCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCC
Q 040742 393 SARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPD 440 (581)
Q Consensus 393 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~ 440 (581)
+..+.+|.++|... .+...+++|+ .++.+...+.
T Consensus 147 ~~~~ifILaTt~~~-------------kll~TI~SRc-q~i~F~pLs~ 180 (624)
T PRK14959 147 PARVTFVLATTEPH-------------KFPVTIVSRC-QHFTFTRLSE 180 (624)
T ss_pred CCCEEEEEecCChh-------------hhhHHHHhhh-hccccCCCCH
Confidence 12344444444321 1667899998 4444443333
No 155
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.87 E-value=1.8e-08 Score=106.10 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=35.7
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+.++|++.-.+.|...+....... . ..+++++||||||||++++++++.+
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~--------~--~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGS--------R--PSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCC--------C--CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 358888888877776665321000 0 1279999999999999999998764
No 156
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=3.2e-08 Score=109.93 Aligned_cols=139 Identities=18% Similarity=0.240 Sum_probs=83.3
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEE-----EecCC----
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIY-----VCGNA---- 323 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~-----~~~~~---- 323 (581)
.+|+||+.+++.+..++..|.. .| +||+||+|+|||++|+.+|+.+...-. .++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl--------------~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~ 83 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKI--------------SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENV 83 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------------CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhh
Confidence 4688999999999888887631 14 589999999999999999988743210 00000
Q ss_pred CccCCceeEEEecCcc--c-----cceecccee-eecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCC
Q 040742 324 TTKAGLTVAVVKDSVT--N-----DYAFEAGAM-VLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSA 394 (581)
Q Consensus 324 ~~~~~l~~~~~~~~~~--~-----~~~~~~g~l-~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~ 394 (581)
....+.. ..++.+ + ...-..... ..+...|++|||++.|+...+ +|+..||+- |.
T Consensus 84 ~~~~Dvi---eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-------------P~ 147 (725)
T PRK07133 84 NNSLDII---EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-------------PK 147 (725)
T ss_pred cCCCcEE---EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-------------CC
Confidence 0001110 001100 0 000000001 123567999999999998877 999999862 23
Q ss_pred CeEE-EEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCC
Q 040742 395 RTSV-LAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLD 437 (581)
Q Consensus 395 ~~~v-iaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d 437 (581)
.+.+ ++|+++. ++.+++++|+- ++-+..
T Consensus 148 ~tifILaTte~~--------------KLl~TI~SRcq-~ieF~~ 176 (725)
T PRK07133 148 HVIFILATTEVH--------------KIPLTILSRVQ-RFNFRR 176 (725)
T ss_pred ceEEEEEcCChh--------------hhhHHHHhhce-eEEccC
Confidence 3444 4444442 28889999994 444433
No 157
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=1.5e-08 Score=111.17 Aligned_cols=140 Identities=21% Similarity=0.214 Sum_probs=83.8
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE----EecC-------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY----VCGN------- 322 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~----~~~~------- 322 (581)
.+|+||+.+++.+..++..|... -.+||+||||+|||++|+.+++.+...-. -+|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~-------------hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i 82 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIA-------------NAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSI 82 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCC-------------eEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHH
Confidence 46899999999988888776411 14899999999999999999998753210 0000
Q ss_pred -CCccCCceeEEEecCc--cc--cc-ee----ccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEe
Q 040742 323 -ATTKAGLTVAVVKDSV--TN--DY-AF----EAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVAS 391 (581)
Q Consensus 323 -~~~~~~l~~~~~~~~~--~~--~~-~~----~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~ 391 (581)
..+..++ ...+.. .+ .. .+ ...+ ..+...+++|||++.++...+ +|+..||+
T Consensus 83 ~~~~~~dv---~~idgas~~~vddIr~l~e~~~~~p-~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe------------- 145 (563)
T PRK06647 83 DNDNSLDV---IEIDGASNTSVQDVRQIKEEIMFPP-ASSRYRVYIIDEVHMLSNSAFNALLKTIEE------------- 145 (563)
T ss_pred HcCCCCCe---EEecCcccCCHHHHHHHHHHHHhch-hcCCCEEEEEEChhhcCHHHHHHHHHhhcc-------------
Confidence 0000011 011110 00 00 00 0001 134567999999999998776 88888874
Q ss_pred eCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCC
Q 040742 392 LSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLD 437 (581)
Q Consensus 392 ~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d 437 (581)
.|..+.+|.+++... ++.+++.+|+. .+.+..
T Consensus 146 pp~~~vfI~~tte~~-------------kL~~tI~SRc~-~~~f~~ 177 (563)
T PRK06647 146 PPPYIVFIFATTEVH-------------KLPATIKSRCQ-HFNFRL 177 (563)
T ss_pred CCCCEEEEEecCChH-------------HhHHHHHHhce-EEEecC
Confidence 123444544443221 17889999994 344333
No 158
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.85 E-value=3.6e-08 Score=105.01 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=35.5
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+.++|.+.....+...+..+.... ...+++++|+||||||++++.+++.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~----------~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGS----------RPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCC----------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 446788877777766664432100 01279999999999999999999766
No 159
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.84 E-value=2e-08 Score=111.09 Aligned_cols=176 Identities=13% Similarity=0.148 Sum_probs=92.1
Q ss_pred hHHHHHHHhhCcc-----ccccHHHHHHHHHHHhcCcccccCCCCCccccCceee-EEeCCCCChHHHHHHHHHHHCC--
Q 040742 243 DIFRQIVQSICPS-----IYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHV-IVVGDPGLGKSQLLQAAAAVSP-- 314 (581)
Q Consensus 243 ~~~~~l~~s~~p~-----I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~i-LL~G~pGtGKT~la~~la~~~~-- 314 (581)
+.++.....+.|+ +.|.|.-.+.|...|...... .+..++ +++|+||||||..++++.+.+.
T Consensus 739 ~p~~~A~rvL~~DYVPD~LPhREeEIeeLasfL~paIkg----------sgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 739 DPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQ----------SGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred ChHHHHHHHcCcccCCCcCCChHHHHHHHHHHHHHHHhc----------CCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3444444444333 457777777666655443210 001144 5999999999999999976551
Q ss_pred ---------CcEEEecCCCccCCceeEEEe------cCccccc---eecc--ceeeecC--ceEEEEcCCCCCCHHHH-H
Q 040742 315 ---------RGIYVCGNATTKAGLTVAVVK------DSVTNDY---AFEA--GAMVLAD--SGLCCIDEFDKMSAEHQ-A 371 (581)
Q Consensus 315 ---------~~~~~~~~~~~~~~l~~~~~~------~~~~~~~---~~~~--g~l~~a~--~gil~iDEi~~~~~~~~-~ 371 (581)
..+++++.............. .+..+.. .+.. ..+.... .-||+|||||.+....+ .
T Consensus 809 aeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDV 888 (1164)
T PTZ00112 809 TKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKV 888 (1164)
T ss_pred HhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHH
Confidence 123565543211110000000 0001100 0000 0000111 23899999999986555 7
Q ss_pred HHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHH
Q 040742 372 LLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVS 448 (581)
Q Consensus 372 L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~ 448 (581)
|+..++--. ....++.|||.+|...-.. .+.+.+.+||..-.+.++..+.++...|.
T Consensus 889 LYnLFR~~~----------~s~SKLiLIGISNdlDLpe----------rLdPRLRSRLg~eeIvF~PYTaEQL~dIL 945 (1164)
T PTZ00112 889 LFTLFDWPT----------KINSKLVLIAISNTMDLPE----------RLIPRCRSRLAFGRLVFSPYKGDEIEKII 945 (1164)
T ss_pred HHHHHHHhh----------ccCCeEEEEEecCchhcch----------hhhhhhhhccccccccCCCCCHHHHHHHH
Confidence 777765311 1134688999999752111 16678889986543444666666655553
No 160
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=6.5e-09 Score=99.10 Aligned_cols=137 Identities=31% Similarity=0.438 Sum_probs=81.6
Q ss_pred ccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeeec---CceEEEEcC
Q 040742 286 VRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLA---DSGLCCIDE 361 (581)
Q Consensus 286 ~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a---~~gil~iDE 361 (581)
++..-.+|++||||||||.+||++|......+. ..|... ..-...+ |. .+...++.+| ...|+||||
T Consensus 202 i~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL-----VQMfIGd---GA-kLVRDAFaLAKEkaP~IIFIDE 272 (424)
T KOG0652|consen 202 IRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL-----VQMFIGD---GA-KLVRDAFALAKEKAPTIIFIDE 272 (424)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH-----Hhhhhcc---hH-HHHHHHHHHhhccCCeEEEEec
Confidence 333347999999999999999999987644322 222221 1000000 10 0111111222 257999999
Q ss_pred CCCCCH-----------HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhh--c
Q 040742 362 FDKMSA-----------EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALL--S 427 (581)
Q Consensus 362 i~~~~~-----------~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all--~ 427 (581)
+|.+.. +.| .+++.+.+-. | .....++-||||+|...- +++||+ .
T Consensus 273 lDAIGtKRfDSek~GDREVQRTMLELLNQLD------G--Fss~~~vKviAATNRvDi-------------LDPALlRSG 331 (424)
T KOG0652|consen 273 LDAIGTKRFDSEKAGDREVQRTMLELLNQLD------G--FSSDDRVKVIAATNRVDI-------------LDPALLRSG 331 (424)
T ss_pred hhhhccccccccccccHHHHHHHHHHHHhhc------C--CCCccceEEEeecccccc-------------cCHHHhhcc
Confidence 987542 246 7888887622 2 233567889999998631 788988 4
Q ss_pred cccEeEEcCCCCCHHHHHHHHHHHHhhccC
Q 040742 428 RFDLVFILLDKPDELLDKRVSEHIMSLHSG 457 (581)
Q Consensus 428 RFdli~~~~d~~~~~~d~~i~~~il~~~~~ 457 (581)
|.|--+- ++.|+++....| +..|.+
T Consensus 332 RLDRKIE-fP~Pne~aRarI----lQIHsR 356 (424)
T KOG0652|consen 332 RLDRKIE-FPHPNEEARARI----LQIHSR 356 (424)
T ss_pred ccccccc-CCCCChHHHHHH----HHHhhh
Confidence 7776444 355666665544 666654
No 161
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=7.6e-08 Score=106.03 Aligned_cols=186 Identities=23% Similarity=0.208 Sum_probs=115.3
Q ss_pred ccCCceeEEEecCccc------cceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeC-----C---ee
Q 040742 325 TKAGLTVAVVKDSVTN------DYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKA-----G---LV 389 (581)
Q Consensus 325 ~~~~l~~~~~~~~~~~------~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~-----g---~~ 389 (581)
+...|.+++..++..| ...+++|++-.||+|||||||++.+....+ .++.+|.++...+... | ..
T Consensus 191 ~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~ 270 (647)
T COG1067 191 IADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRP 270 (647)
T ss_pred ChhhcceeEEEcCCCCccCCCCcccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCC
Confidence 3445666666665544 345789999999999999999999996555 8888887764433211 1 22
Q ss_pred EeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCC-CCCHHHHHHHHHHHHhhccCCCCCcccccCc
Q 040742 390 ASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLD-KPDELLDKRVSEHIMSLHSGYQEHSSAAKKP 468 (581)
Q Consensus 390 ~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d-~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~ 468 (581)
-..|+++.++++.|+.. -++ --.+.+.++.=|++-..+.+ .|+.+...
T Consensus 271 e~vP~d~klI~~Gn~~~-l~~-------l~~~~~~r~~g~~y~ae~~~~m~~~~~nr----------------------- 319 (647)
T COG1067 271 ESVPLDLKLILAGNRED-LED-------LHEPDRSRIEGFGYEAEFEDTMPITDANR----------------------- 319 (647)
T ss_pred CCcccceEEEeeCCHHH-HHh-------hcccCHHHHhhcceEEEEcCCCCCChHHH-----------------------
Confidence 34577888888888751 010 00133333333433222222 22111111
Q ss_pred ccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHH-HhcCCCcCCHHHHHHHHHHHHHHhhcCCCCC
Q 040742 469 RTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYA-RTFVFPRMTKPAAEILQKFYLKLRDHNTSAD 547 (581)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~a-r~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~ 547 (581)
...+..|.+.. +..=-|.++.+|.+.|..+.. +.....+
T Consensus 320 -------------------------------------~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~---R~Ag~~~ 359 (647)
T COG1067 320 -------------------------------------SKLVQFYVQELARDGNIPHLDKDAVEELIREAA---RRAGDQN 359 (647)
T ss_pred -------------------------------------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH---Hhccccc
Confidence 11133333322 221257788888887776433 2224445
Q ss_pred CccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 548 STPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 548 ~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
..++++|.|..|+|.|--.|..++++.++.+||+
T Consensus 360 ~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve 393 (647)
T COG1067 360 KLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVE 393 (647)
T ss_pred eeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHH
Confidence 6788999999999999999999999999999974
No 162
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.3e-08 Score=96.60 Aligned_cols=126 Identities=27% Similarity=0.371 Sum_probs=74.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeeec---CceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLA---DSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a---~~gil~iDEi~~~~ 366 (581)
.+||+||||||||+|++++|+....++. +.|...-..-|.. |-. .....+.+| ...|+||||+|.+.
T Consensus 191 gvllygppg~gktml~kava~~t~a~firvvgsefvqkylge--------gpr-mvrdvfrlakenapsiifideidaia 261 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE--------GPR-MVRDVFRLAKENAPSIIFIDEIDAIA 261 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhcc--------CcH-HHHHHHHHHhccCCcEEEeehhhhHh
Confidence 5999999999999999999987655443 4443221100000 000 000001111 25799999998754
Q ss_pred HH-----------HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhh--ccccEe
Q 040742 367 AE-----------HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALL--SRFDLV 432 (581)
Q Consensus 367 ~~-----------~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all--~RFdli 432 (581)
.. .| .|++.+.+-. |.. -..++-||.|+|... + +++||+ .|.|--
T Consensus 262 tkrfdaqtgadrevqril~ellnqmd------gfd--q~~nvkvimatnrad-t------------ldpallrpgrldrk 320 (408)
T KOG0727|consen 262 TKRFDAQTGADREVQRILIELLNQMD------GFD--QTTNVKVIMATNRAD-T------------LDPALLRPGRLDRK 320 (408)
T ss_pred hhhccccccccHHHHHHHHHHHHhcc------CcC--cccceEEEEecCccc-c------------cCHhhcCCcccccc
Confidence 32 46 6777776421 222 234577899999752 1 788888 477765
Q ss_pred EEcCCCCCHHHHHHH
Q 040742 433 FILLDKPDELLDKRV 447 (581)
Q Consensus 433 ~~~~d~~~~~~d~~i 447 (581)
+-+ +.||....+.+
T Consensus 321 ief-plpdrrqkrlv 334 (408)
T KOG0727|consen 321 IEF-PLPDRRQKRLV 334 (408)
T ss_pred ccC-CCCchhhhhhh
Confidence 554 37776655544
No 163
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=3.6e-08 Score=106.59 Aligned_cols=137 Identities=25% Similarity=0.279 Sum_probs=80.8
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEEE----ecC------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIYV----CGN------ 322 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~~----~~~------ 322 (581)
.+++||+.+++.+.-++..+.. .| +||+||||+|||++|+.+|+.+...-.. ++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i--------------~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~ 81 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRV--------------SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVE 81 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCC--------------CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHH
Confidence 4688999999998888877631 15 5789999999999999999987521000 000
Q ss_pred --CCccCCceeEEEecCc--cccc---eec--cc-eeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEe
Q 040742 323 --ATTKAGLTVAVVKDSV--TNDY---AFE--AG-AMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVAS 391 (581)
Q Consensus 323 --~~~~~~l~~~~~~~~~--~~~~---~~~--~g-~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~ 391 (581)
..+..++.. .+.. .|.- .+. .. .-..+...|++|||++.++.+.. +|+..|++.
T Consensus 82 i~~g~~~d~~e---idaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep------------ 146 (486)
T PRK14953 82 IDKGSFPDLIE---IDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP------------ 146 (486)
T ss_pred HhcCCCCcEEE---EeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC------------
Confidence 000111110 1110 0000 000 00 01124567999999999998776 888888752
Q ss_pred eCCCe-EEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEc
Q 040742 392 LSART-SVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFIL 435 (581)
Q Consensus 392 ~~~~~-~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~ 435 (581)
+..+ .|++|+++. .+.+++.+|+. .+.+
T Consensus 147 -p~~~v~Il~tt~~~--------------kl~~tI~SRc~-~i~f 175 (486)
T PRK14953 147 -PPRTIFILCTTEYD--------------KIPPTILSRCQ-RFIF 175 (486)
T ss_pred -CCCeEEEEEECCHH--------------HHHHHHHHhce-EEEc
Confidence 2223 344554432 17789999984 3443
No 164
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.80 E-value=6.7e-08 Score=101.37 Aligned_cols=153 Identities=17% Similarity=0.156 Sum_probs=87.2
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE----EecCC------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY----VCGNA------ 323 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~----~~~~~------ 323 (581)
.+++|++.++..+...+..|... -.+||+||||+|||++++.+++.+...-. .+|.-
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~-------------~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~ 80 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIA-------------HAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCC-------------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 56899999999998888766311 14799999999999999999988742200 00000
Q ss_pred --CccCCceeEEEecCc--cc-----cceeccce-eeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEee
Q 040742 324 --TTKAGLTVAVVKDSV--TN-----DYAFEAGA-MVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASL 392 (581)
Q Consensus 324 --~~~~~l~~~~~~~~~--~~-----~~~~~~g~-l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~ 392 (581)
....++ ...++. .+ ...-.... -..++..+++|||++.+..... .|+..|++.
T Consensus 81 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~------------- 144 (355)
T TIGR02397 81 NSGSSLDV---IEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP------------- 144 (355)
T ss_pred hcCCCCCE---EEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC-------------
Confidence 000011 001110 00 00000001 1224567999999999998766 888888651
Q ss_pred CCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHH
Q 040742 393 SARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEH 450 (581)
Q Consensus 393 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~ 450 (581)
+..+.+|.++|... .+.+++.+|+. .+.+. .++++....+..+
T Consensus 145 ~~~~~lIl~~~~~~-------------~l~~~l~sr~~-~~~~~-~~~~~~l~~~l~~ 187 (355)
T TIGR02397 145 PEHVVFILATTEPH-------------KIPATILSRCQ-RFDFK-RIPLEDIVERLKK 187 (355)
T ss_pred ccceeEEEEeCCHH-------------HHHHHHHhhee-EEEcC-CCCHHHHHHHHHH
Confidence 23355555554321 16789999994 34443 4444443333333
No 165
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=3.1e-08 Score=104.22 Aligned_cols=158 Identities=21% Similarity=0.215 Sum_probs=89.0
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcE---EEecCC------
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGI---YVCGNA------ 323 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~---~~~~~~------ 323 (581)
..+|+||+.+++.+.-++..+......-+.+ -...+||+||||+|||++|+.+|+.+...- .-+|.-
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~----l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSG----MTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCC----CCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 3568999999999988887764210000000 012499999999999999999998753210 000000
Q ss_pred --CccCCceeEEEecC--cc----ccceecc-ceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeC
Q 040742 324 --TTKAGLTVAVVKDS--VT----NDYAFEA-GAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLS 393 (581)
Q Consensus 324 --~~~~~l~~~~~~~~--~~----~~~~~~~-g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~ 393 (581)
.+-.++.. +..+. .. ....-.. ..-..+...|++|||+++|++..+ +|+..||+-. +
T Consensus 80 ~~~~hpD~~~-i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~------------~ 146 (394)
T PRK07940 80 LAGTHPDVRV-VAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP------------P 146 (394)
T ss_pred hcCCCCCEEE-eccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC------------C
Confidence 00011100 00000 00 0000000 001123456999999999998877 8999998621 2
Q ss_pred CCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHH
Q 040742 394 ARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELL 443 (581)
Q Consensus 394 ~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~ 443 (581)
..+.|++|+|+.. +.++++||+ ..+.+ ..|+.+.
T Consensus 147 ~~~fIL~a~~~~~--------------llpTIrSRc-~~i~f-~~~~~~~ 180 (394)
T PRK07940 147 RTVWLLCAPSPED--------------VLPTIRSRC-RHVAL-RTPSVEA 180 (394)
T ss_pred CCeEEEEECChHH--------------ChHHHHhhC-eEEEC-CCCCHHH
Confidence 2356777777632 889999999 44444 4444433
No 166
>PRK04195 replication factor C large subunit; Provisional
Probab=98.80 E-value=7.1e-08 Score=105.14 Aligned_cols=153 Identities=20% Similarity=0.234 Sum_probs=83.7
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeE
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVA 332 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~ 332 (581)
.+++|++.++..+...+-....... .-++||+||||||||++|+++++.++..+. ++.......+....
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~----------~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~ 83 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKP----------KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIER 83 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCC----------CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHH
Confidence 4588999988877655543211000 128999999999999999999999865443 33221100000000
Q ss_pred EEecCccccceeccceeeecCceEEEEcCCCCCCH----HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCC
Q 040742 333 VVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSA----EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGG 407 (581)
Q Consensus 333 ~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~----~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g 407 (581)
.. +. ......+.-....+++|||++.+.. ... +|+..++. .+..+|.++|...
T Consensus 84 ~i-----~~-~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~---------------~~~~iIli~n~~~- 141 (482)
T PRK04195 84 VA-----GE-AATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK---------------AKQPIILTANDPY- 141 (482)
T ss_pred HH-----HH-hhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc---------------CCCCEEEeccCcc-
Confidence 00 00 0000111102467999999999875 223 67777653 1234666777642
Q ss_pred CCCCccChhhhcCCCh-hhhccccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 408 HYNRAKTVNENLKMSA-ALLSRFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 408 ~~~~~~~~~~~~~l~~-all~RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
. +.. +|.+|+.. +.+ ..++......+...++
T Consensus 142 --~----------~~~k~Lrsr~~~-I~f-~~~~~~~i~~~L~~i~ 173 (482)
T PRK04195 142 --D----------PSLRELRNACLM-IEF-KRLSTRSIVPVLKRIC 173 (482)
T ss_pred --c----------cchhhHhccceE-EEe-cCCCHHHHHHHHHHHH
Confidence 1 444 77788743 333 4444444444444444
No 167
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=1.4e-07 Score=101.34 Aligned_cols=145 Identities=21% Similarity=0.195 Sum_probs=84.7
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-----EecCC-----
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-----VCGNA----- 323 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-----~~~~~----- 323 (581)
.+|+||+.++..+...+..|... -.+||+||||+|||++|+.+++.+..... .+|..
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~-------------ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~ 83 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAA-------------HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKE 83 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCc-------------eEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHH
Confidence 36889999999888877766311 14899999999999999999988743110 00000
Q ss_pred ---CccCCceeEEEecC--ccc--cc--eec--cceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEe
Q 040742 324 ---TTKAGLTVAVVKDS--VTN--DY--AFE--AGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVAS 391 (581)
Q Consensus 324 ---~~~~~l~~~~~~~~--~~~--~~--~~~--~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~ 391 (581)
.+..++. ..++ ..| .. ..+ +-.-..++..|++|||++.+..+.+ .|+..||+-
T Consensus 84 i~~~~~~d~~---~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep------------ 148 (451)
T PRK06305 84 ISSGTSLDVL---EIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP------------ 148 (451)
T ss_pred HhcCCCCceE---EeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC------------
Confidence 0000110 0111 000 00 000 0000124578999999999998776 899999861
Q ss_pred eCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHH
Q 040742 392 LSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDEL 442 (581)
Q Consensus 392 ~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~ 442 (581)
+..+.+|.++|... .+.+++.+|+.. +.+ ..++++
T Consensus 149 -~~~~~~Il~t~~~~-------------kl~~tI~sRc~~-v~f-~~l~~~ 183 (451)
T PRK06305 149 -PQHVKFFLATTEIH-------------KIPGTILSRCQK-MHL-KRIPEE 183 (451)
T ss_pred -CCCceEEEEeCChH-------------hcchHHHHhceE-EeC-CCCCHH
Confidence 22344555555321 277899999943 443 334433
No 168
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.79 E-value=1.5e-07 Score=91.31 Aligned_cols=135 Identities=21% Similarity=0.242 Sum_probs=86.5
Q ss_pred ceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEe
Q 040742 354 SGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLV 432 (581)
Q Consensus 354 ~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli 432 (581)
.|++||||++.++-+.- .|+.++|+-. .-.||.|+|...-.......+....++++.|+||. +|
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i--------------aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~I 361 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI--------------APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LI 361 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC--------------CceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eE
Confidence 48999999999997766 8889987521 23467777864111111122333346999999998 55
Q ss_pred EEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHH
Q 040742 433 FILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKY 512 (581)
Q Consensus 433 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~y 512 (581)
+-...+++++....| ..+.
T Consensus 362 irt~~y~~~e~r~Ii-----~~Ra-------------------------------------------------------- 380 (456)
T KOG1942|consen 362 IRTLPYDEEEIRQII-----KIRA-------------------------------------------------------- 380 (456)
T ss_pred EeeccCCHHHHHHHH-----HHHH--------------------------------------------------------
Confidence 554445544443332 1000
Q ss_pred HHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 513 IAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 513 i~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
+ .-.-.++++|.+++... +...|.|....|+--|--.|+.++++.|..+|++
T Consensus 381 ----~-~E~l~~~e~a~~~l~~~------------gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dve 432 (456)
T KOG1942|consen 381 ----Q-VEGLQVEEEALDLLAEI------------GTSTSLRYAVQLLTPASILAKTNGRKEISVEDVE 432 (456)
T ss_pred ----h-hhcceecHHHHHHHHhh------------ccchhHHHHHHhcCHHHHHHHHcCCceeecccHH
Confidence 0 00124677888877652 2344788888888888888999999999998873
No 169
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79 E-value=1.1e-07 Score=104.94 Aligned_cols=138 Identities=22% Similarity=0.217 Sum_probs=83.5
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-Ee-cCCCc------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VC-GNATT------ 325 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~-~~~~~------ 325 (581)
.+++||+.+++.+.-.+..|... -++||+||+|+|||++|+.+++.+..... .. |....
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~-------------ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~ 90 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIA-------------QAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE 90 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC-------------ceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH
Confidence 46899999999998888876421 15999999999999999999998743210 11 10000
Q ss_pred ---------cCCceeEEEecCc--cc-----cce--eccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeC
Q 040742 326 ---------KAGLTVAVVKDSV--TN-----DYA--FEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKA 386 (581)
Q Consensus 326 ---------~~~l~~~~~~~~~--~~-----~~~--~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~ 386 (581)
-.++. ..+.. .+ +.. ....+ +.+...|++|||++.++.... +|+..||+
T Consensus 91 ~C~~i~~g~h~Dv~---e~~a~s~~gvd~IReIie~~~~~P-~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-------- 158 (598)
T PRK09111 91 HCQAIMEGRHVDVL---EMDAASHTGVDDIREIIESVRYRP-VSARYKVYIIDEVHMLSTAAFNALLKTLEE-------- 158 (598)
T ss_pred HHHHHhcCCCCceE---EecccccCCHHHHHHHHHHHHhch-hcCCcEEEEEEChHhCCHHHHHHHHHHHHh--------
Confidence 01111 00100 00 000 00011 235678999999999998766 89998886
Q ss_pred CeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEc
Q 040742 387 GLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFIL 435 (581)
Q Consensus 387 g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~ 435 (581)
.+..+.+|.+++... ++...+++|+ .++-+
T Consensus 159 -----Pp~~~~fIl~tte~~-------------kll~tI~SRc-q~~~f 188 (598)
T PRK09111 159 -----PPPHVKFIFATTEIR-------------KVPVTVLSRC-QRFDL 188 (598)
T ss_pred -----CCCCeEEEEEeCChh-------------hhhHHHHhhe-eEEEe
Confidence 123344444444321 1667899998 44443
No 170
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.78 E-value=1.5e-07 Score=90.90 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=96.4
Q ss_pred ccccccHHHHHHHHHH---HhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCC-CcEE---EecCCCcc
Q 040742 254 PSIYGHELVKAGITLA---LFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSP-RGIY---VCGNATTK 326 (581)
Q Consensus 254 p~I~G~e~vk~~lll~---l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~-~~~~---~~~~~~~~ 326 (581)
.+++|.+.-|+.+... .+.|..- -|+||+|++|||||.+++++..... .... +.....
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pa-------------nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L-- 91 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPA-------------NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL-- 91 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCC-------------cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh--
Confidence 3478888888877643 4455311 2999999999999999999987653 2211 111110
Q ss_pred CCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHH-H-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCC
Q 040742 327 AGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEH-Q-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANP 404 (581)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~-~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np 404 (581)
..+. . +-.-.-.....-|+|+|++.=-..+. . .|..+|| |.....|.++.+.||+|.
T Consensus 92 ~~l~----------~--l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~Le---------Ggle~~P~NvliyATSNR 150 (249)
T PF05673_consen 92 GDLP----------E--LLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLE---------GGLEARPDNVLIYATSNR 150 (249)
T ss_pred ccHH----------H--HHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhc---------CccccCCCcEEEEEecch
Confidence 0000 0 00000011235799999985333332 2 6667776 334456889999999997
Q ss_pred C---CCCCCCccC-----hh--hhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhh
Q 040742 405 V---GGHYNRAKT-----VN--ENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSL 454 (581)
Q Consensus 405 ~---~g~~~~~~~-----~~--~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~ 454 (581)
. ...+..... +. +.++=.=+|-+||.+.+. +..|+.+.-..|.++....
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~-F~~~~q~~YL~IV~~~~~~ 209 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLS-FYPPDQEEYLAIVRHYAER 209 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEE-ecCCCHHHHHHHHHHHHHH
Confidence 5 222222211 11 111111378899998655 5678888888888888763
No 171
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=6.4e-08 Score=107.02 Aligned_cols=111 Identities=21% Similarity=0.204 Sum_probs=67.6
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE------------Ee
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY------------VC 320 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~------------~~ 320 (581)
..+|+||+.+++.+..++..|+-. -++||+||||+|||++|+.+|+.+..... -+
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~-------------ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVG-------------HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCC-------------eeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 356889999999988887776311 14999999999999999999988743110 00
Q ss_pred cCC------CccCCceeEEEecCc--cc--cc-----eeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHc
Q 040742 321 GNA------TTKAGLTVAVVKDSV--TN--DY-----AFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQ 378 (581)
Q Consensus 321 ~~~------~~~~~l~~~~~~~~~--~~--~~-----~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~ 378 (581)
|.. ...... .-...+.. .+ .. .+.-++ ..++..|++|||+++|+...+ +|+..||+
T Consensus 82 g~C~sC~~~~~g~~~-n~~~~d~~s~~~vd~Ir~l~e~~~~~P-~~~~~KVvIIdEad~Lt~~a~naLLK~LEe 153 (620)
T PRK14954 82 GECESCRDFDAGTSL-NISEFDAASNNSVDDIRQLRENVRYGP-QKGRYRVYIIDEVHMLSTAAFNAFLKTLEE 153 (620)
T ss_pred ccCHHHHHHhccCCC-CeEEecccccCCHHHHHHHHHHHHhhh-hcCCCEEEEEeChhhcCHHHHHHHHHHHhC
Confidence 000 000000 00011110 00 00 000011 235678999999999998776 99999986
No 172
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.3e-08 Score=107.35 Aligned_cols=166 Identities=24% Similarity=0.253 Sum_probs=97.9
Q ss_pred cccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEE
Q 040742 255 SIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAV 333 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~ 333 (581)
+|-|...+|.++...+.-..+-. .-....++|-...|||+||||||||.||.+++...+-.+. +.|... ....
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp-~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPEl-----L~Ky 741 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYP-QIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPEL-----LSKY 741 (952)
T ss_pred ecccHHHHHHHHHHHHhccccch-HHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHH-----HHHH
Confidence 46677778877776655432211 0112234555559999999999999999999999876554 555432 1111
Q ss_pred EecCccccc-eeccceeeecCceEEEEcCCCCCCHHH-----------H-HHHHHHHccEEEEeeCCeeEeeCCCeEEEE
Q 040742 334 VKDSVTNDY-AFEAGAMVLADSGLCCIDEFDKMSAEH-----------Q-ALLEAMEQQCVSVAKAGLVASLSARTSVLA 400 (581)
Q Consensus 334 ~~~~~~~~~-~~~~g~l~~a~~gil~iDEi~~~~~~~-----------~-~L~~~me~~~i~i~k~g~~~~~~~~~~via 400 (581)
......+.. .+.. ...|...|+|+||||.+.+.. . .|+.-|+.-. | + ..+.|+|
T Consensus 742 IGaSEq~vR~lF~r--A~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E------g----l-~GV~i~a 808 (952)
T KOG0735|consen 742 IGASEQNVRDLFER--AQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE------G----L-DGVYILA 808 (952)
T ss_pred hcccHHHHHHHHHH--hhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc------c----c-ceEEEEE
Confidence 111000100 0110 112357899999999987541 1 4555554211 1 1 2355666
Q ss_pred eeCCCCCCCCCccChhhhcCCChhhh--ccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 401 AANPVGGHYNRAKTVNENLKMSAALL--SRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 401 a~Np~~g~~~~~~~~~~~~~l~~all--~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
|+..+.- +++||| .|+|- .+.-+.|++.+...|...+-+
T Consensus 809 aTsRpdl-------------iDpALLRpGRlD~-~v~C~~P~~~eRl~il~~ls~ 849 (952)
T KOG0735|consen 809 ATSRPDL-------------IDPALLRPGRLDK-LVYCPLPDEPERLEILQVLSN 849 (952)
T ss_pred ecCCccc-------------cCHhhcCCCccce-eeeCCCCCcHHHHHHHHHHhh
Confidence 6665421 889999 58987 445688888888888666555
No 173
>PRK06620 hypothetical protein; Validated
Probab=98.74 E-value=2e-07 Score=90.29 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.++|+||||+|||+|++++++...
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccC
Confidence 699999999999999999887654
No 174
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=1.1e-07 Score=105.70 Aligned_cols=114 Identities=21% Similarity=0.264 Sum_probs=68.6
Q ss_pred HHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-E----ecC
Q 040742 248 IVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-V----CGN 322 (581)
Q Consensus 248 l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~----~~~ 322 (581)
+...-..+|+||+.+++.|...+..+... -.+||+||||+|||++++.+++.+..... . +|.
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~~~i~-------------~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAEGRVA-------------HAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHhCCCc-------------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 33334457999999999998888766310 14699999999999999999988742110 0 000
Q ss_pred CC--------ccCCceeEEEecCc--cc-----cce--eccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHc
Q 040742 323 AT--------TKAGLTVAVVKDSV--TN-----DYA--FEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQ 378 (581)
Q Consensus 323 ~~--------~~~~l~~~~~~~~~--~~-----~~~--~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~ 378 (581)
.. ...++. ..+.. .+ ... ..... ..++..|++|||++.|+.+.. .|+..||+
T Consensus 77 c~~c~~i~~~~~~d~~---~i~~~~~~~vd~ir~ii~~~~~~p-~~~~~kVvIIDEa~~L~~~a~naLLk~LEe 146 (585)
T PRK14950 77 CEMCRAIAEGSAVDVI---EMDAASHTSVDDAREIIERVQFRP-ALARYKVYIIDEVHMLSTAAFNALLKTLEE 146 (585)
T ss_pred CHHHHHHhcCCCCeEE---EEeccccCCHHHHHHHHHHHhhCc-ccCCeEEEEEeChHhCCHHHHHHHHHHHhc
Confidence 00 000110 00110 00 000 00011 234678999999999998766 89998886
No 175
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.73 E-value=2.6e-07 Score=90.20 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=70.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEH 369 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~ 369 (581)
...+.||+|||||..++.+++.+++.++ +........... ++ +-.|... .|.++|+||+|+++.+.
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l---------~r--il~G~~~--~GaW~cfdefnrl~~~v 100 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSL---------SR--ILKGLAQ--SGAWLCFDEFNRLSEEV 100 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHH---------HH--HHHHHHH--HT-EEEEETCCCSSHHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHH---------HH--HHHHHhh--cCchhhhhhhhhhhHHH
Confidence 4668999999999999999999999887 332221100000 00 1112221 37799999999999774
Q ss_pred H--------HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCC-CCCCCccChhhhcCCChhhhccccE
Q 040742 370 Q--------ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVG-GHYNRAKTVNENLKMSAALLSRFDL 431 (581)
Q Consensus 370 ~--------~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~-g~~~~~~~~~~~~~l~~all~RFdl 431 (581)
. .+..++..+.-.+.-.|....++..+.+..|+||.. |+.. +|+.|..-|=-
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~----------LP~nLk~lFRp 161 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSE----------LPENLKALFRP 161 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC------------S-HHHCTTEEE
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCccc----------CCHhHHHHhhe
Confidence 2 344555554333444588899999999999999973 3333 88888877733
No 176
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=4.3e-07 Score=95.73 Aligned_cols=134 Identities=17% Similarity=0.205 Sum_probs=79.2
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEE-ecCCCccCCceeE
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYV-CGNATTKAGLTVA 332 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~-~~~~~~~~~l~~~ 332 (581)
.+++||+.+++.+...+..|... .++||+||||+|||++++.+++.+...... .+.... ....
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~-------------~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~-~~~~-- 80 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLA-------------QALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS-FNIF-- 80 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCC-------------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC-cceE--
Confidence 46889999999888888766311 279999999999999999999887431110 000000 0000
Q ss_pred EEecCcc----ccc--eec-cce-eeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeC
Q 040742 333 VVKDSVT----NDY--AFE-AGA-MVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAAN 403 (581)
Q Consensus 333 ~~~~~~~----~~~--~~~-~g~-l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~N 403 (581)
..+... ... ..+ ... -..++..+++|||++.+....+ .|+..|++. +..+.+|.++|
T Consensus 81 -~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-------------~~~~~~Il~~~ 146 (367)
T PRK14970 81 -ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-------------PAHAIFILATT 146 (367)
T ss_pred -EeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-------------CCceEEEEEeC
Confidence 000000 000 000 000 1123567999999999997766 788877641 22344444444
Q ss_pred CCCCCCCCccChhhhcCCChhhhcccc
Q 040742 404 PVGGHYNRAKTVNENLKMSAALLSRFD 430 (581)
Q Consensus 404 p~~g~~~~~~~~~~~~~l~~all~RFd 430 (581)
... ++.+++.+|+-
T Consensus 147 ~~~-------------kl~~~l~sr~~ 160 (367)
T PRK14970 147 EKH-------------KIIPTILSRCQ 160 (367)
T ss_pred Ccc-------------cCCHHHHhcce
Confidence 321 17789999994
No 177
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=2.2e-07 Score=103.28 Aligned_cols=141 Identities=18% Similarity=0.252 Sum_probs=83.1
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEE-----EecCC----
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIY-----VCGNA---- 323 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~-----~~~~~---- 323 (581)
.+|+||+.+++.+..++..|.. .| +||+||+|+|||++|+.+++.+..... .+|..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l--------------~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~ 82 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKL--------------AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCV 82 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------------CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHH
Confidence 4689999999999888887642 15 799999999999999999998642100 00000
Q ss_pred --CccCCceeEEEecCcc--c--cc--ee-ccc-eeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEee
Q 040742 324 --TTKAGLTVAVVKDSVT--N--DY--AF-EAG-AMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASL 392 (581)
Q Consensus 324 --~~~~~l~~~~~~~~~~--~--~~--~~-~~g-~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~ 392 (581)
...... .-...+..+ + .. .. ... .-..++..|++|||++.++.+.+ +|+..||+-
T Consensus 83 ~~~~~~~~-n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep------------- 148 (614)
T PRK14971 83 AFNEQRSY-NIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP------------- 148 (614)
T ss_pred HHhcCCCC-ceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC-------------
Confidence 000000 000111100 0 00 00 000 01234567999999999998877 999999851
Q ss_pred CCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcC
Q 040742 393 SARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILL 436 (581)
Q Consensus 393 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~ 436 (581)
+..+.+|.+++... ++.+++.+|+.+ +-+.
T Consensus 149 p~~tifIL~tt~~~-------------kIl~tI~SRc~i-v~f~ 178 (614)
T PRK14971 149 PSYAIFILATTEKH-------------KILPTILSRCQI-FDFN 178 (614)
T ss_pred CCCeEEEEEeCCch-------------hchHHHHhhhhe-eecC
Confidence 22344444444221 288899999944 4433
No 178
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.66 E-value=2.1e-07 Score=91.66 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
+++|+||||+|||+|++++++.+.
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999987653
No 179
>PRK06893 DNA replication initiation factor; Validated
Probab=98.65 E-value=2.2e-07 Score=91.13 Aligned_cols=120 Identities=19% Similarity=0.257 Sum_probs=64.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC----CCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS----PRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~ 366 (581)
.++|+||||||||+|++++++.+ ....|+...... .. ... ... .+.+..+++|||++.+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--~~---------~~~--~~~---~~~~~dlLilDDi~~~~ 104 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--YF---------SPA--VLE---NLEQQDLVCLDDLQAVI 104 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--hh---------hHH--HHh---hcccCCEEEEeChhhhc
Confidence 58999999999999999999775 233343321100 00 000 000 11235699999999875
Q ss_pred H--HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhcccc--EeEEcCCCCCH
Q 040742 367 A--EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD--LVFILLDKPDE 441 (581)
Q Consensus 367 ~--~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFd--li~~~~d~~~~ 441 (581)
. ..+ .|+..++...- .....++.|+|.....|+ ...+.|.+|+- +++- ...|+.
T Consensus 105 ~~~~~~~~l~~l~n~~~~-----------~~~~illits~~~p~~l~---------~~~~~L~sRl~~g~~~~-l~~pd~ 163 (229)
T PRK06893 105 GNEEWELAIFDLFNRIKE-----------QGKTLLLISADCSPHALS---------IKLPDLASRLTWGEIYQ-LNDLTD 163 (229)
T ss_pred CChHHHHHHHHHHHHHHH-----------cCCcEEEEeCCCChHHcc---------ccchhHHHHHhcCCeee-CCCCCH
Confidence 3 233 66666653210 011234444554322232 13478999874 3343 456665
Q ss_pred HHHHHH
Q 040742 442 LLDKRV 447 (581)
Q Consensus 442 ~~d~~i 447 (581)
+....+
T Consensus 164 e~~~~i 169 (229)
T PRK06893 164 EQKIIV 169 (229)
T ss_pred HHHHHH
Confidence 555444
No 180
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.2e-07 Score=106.64 Aligned_cols=148 Identities=15% Similarity=0.197 Sum_probs=101.6
Q ss_pred hHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcE--E--
Q 040742 243 DIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGI--Y-- 318 (581)
Q Consensus 243 ~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~--~-- 318 (581)
..|..|.+.+...|+||+++..+|..++...... .+-+ .++.-+||.||.|+|||.||+++|.++..+- +
T Consensus 551 ~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~g-----l~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~Ir 624 (898)
T KOG1051|consen 551 ERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAG-----LKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIR 624 (898)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcc-----cCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEE
Confidence 4567788999999999999999999988765321 0101 3457899999999999999999999985422 1
Q ss_pred EecCC--------CccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCee
Q 040742 319 VCGNA--------TTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLV 389 (581)
Q Consensus 319 ~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~ 389 (581)
+.-.. .+..++.+... .|. -..++......|++||||+++.++.+ .|+++|++|+++-.. |..
T Consensus 625 iDmse~~evskligsp~gyvG~e~----gg~---LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~-Gr~ 696 (898)
T KOG1051|consen 625 LDMSEFQEVSKLIGSPPGYVGKEE----GGQ---LTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSH-GRE 696 (898)
T ss_pred echhhhhhhhhccCCCcccccchh----HHH---HHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCC-CcE
Confidence 21111 11111111110 111 12233334467999999999999998 899999999998753 455
Q ss_pred EeeCCCeEEEEeeCCC
Q 040742 390 ASLSARTSVLAAANPV 405 (581)
Q Consensus 390 ~~~~~~~~viaa~Np~ 405 (581)
+.+ .++.||.|+|-.
T Consensus 697 Vd~-kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 697 VDF-KNAIFIMTSNVG 711 (898)
T ss_pred eec-cceEEEEecccc
Confidence 554 358999999974
No 181
>PRK08727 hypothetical protein; Validated
Probab=98.65 E-value=4.9e-07 Score=88.90 Aligned_cols=118 Identities=21% Similarity=0.287 Sum_probs=67.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC----cEEEecCCCccCCceeEEEecCccccceecccee-eecCceEEEEcCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR----GIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAM-VLADSGLCCIDEFDKM 365 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l-~~a~~gil~iDEi~~~ 365 (581)
.++|+|++|||||+|+.+++..+.. ..|+..... . ..+. ..+ .+.+..+++|||++.+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~-----~---------~~~~---~~~~~l~~~dlLiIDDi~~l 105 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA-----A---------GRLR---DALEALEGRSLVALDGLESI 105 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh-----h---------hhHH---HHHHHHhcCCEEEEeCcccc
Confidence 5999999999999999999766532 233321110 0 0000 000 1123468999999998
Q ss_pred CH--HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccc--cEeEEcCCCCC
Q 040742 366 SA--EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRF--DLVFILLDKPD 440 (581)
Q Consensus 366 ~~--~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RF--dli~~~~d~~~ 440 (581)
.. ..+ .++..++... ..+..+|.|+|.....|. .+.++|.||| .+++. .+.|+
T Consensus 106 ~~~~~~~~~lf~l~n~~~------------~~~~~vI~ts~~~p~~l~---------~~~~dL~SRl~~~~~~~-l~~~~ 163 (233)
T PRK08727 106 AGQREDEVALFDFHNRAR------------AAGITLLYTARQMPDGLA---------LVLPDLRSRLAQCIRIG-LPVLD 163 (233)
T ss_pred cCChHHHHHHHHHHHHHH------------HcCCeEEEECCCChhhhh---------hhhHHHHHHHhcCceEE-ecCCC
Confidence 63 334 6666665421 112346677775433343 1679999997 34344 35555
Q ss_pred HHHHHHH
Q 040742 441 ELLDKRV 447 (581)
Q Consensus 441 ~~~d~~i 447 (581)
.+....+
T Consensus 164 ~e~~~~i 170 (233)
T PRK08727 164 DVARAAV 170 (233)
T ss_pred HHHHHHH
Confidence 5554444
No 182
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=3.4e-07 Score=101.84 Aligned_cols=141 Identities=21% Similarity=0.219 Sum_probs=83.3
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE------EecCCC---
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY------VCGNAT--- 324 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~------~~~~~~--- 324 (581)
.+++||+.+++.|...+..+.. . .++||+||||+|||++|+.+|+.+..... -+|...
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl-----------~--~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRI-----------A--PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCC-----------C--ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence 4688999999998888876631 1 27999999999999999999998754211 011000
Q ss_pred -----ccCCceeEEEecCcc--c-----cceecc-ceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeE
Q 040742 325 -----TKAGLTVAVVKDSVT--N-----DYAFEA-GAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVA 390 (581)
Q Consensus 325 -----~~~~l~~~~~~~~~~--~-----~~~~~~-g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~ 390 (581)
+..++. ..+... + +..-.. ..-+.+...|++|||+++|+.+.+ +|+..||+-
T Consensus 83 ~i~~g~h~D~~---ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP----------- 148 (620)
T PRK14948 83 AIAAGNALDVI---EIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP----------- 148 (620)
T ss_pred HHhcCCCccEE---EEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-----------
Confidence 000110 001100 0 000000 001123467999999999998777 999999851
Q ss_pred eeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCC
Q 040742 391 SLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLD 437 (581)
Q Consensus 391 ~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d 437 (581)
+..+.+|.+++... .+.+++.+|+. .+.+..
T Consensus 149 --p~~tvfIL~t~~~~-------------~llpTIrSRc~-~~~f~~ 179 (620)
T PRK14948 149 --PPRVVFVLATTDPQ-------------RVLPTIISRCQ-RFDFRR 179 (620)
T ss_pred --CcCeEEEEEeCChh-------------hhhHHHHhhee-EEEecC
Confidence 22344444444221 17789999994 444443
No 183
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=6.5e-08 Score=97.81 Aligned_cols=164 Identities=22% Similarity=0.247 Sum_probs=92.1
Q ss_pred cccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEE
Q 040742 255 SIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAV 333 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~ 333 (581)
.++-+..+++.|.-........ +.+..++| ||||+||||||||.+|+.+|.-++-..- .+|....+.| ...
T Consensus 356 ~ViL~psLe~Rie~lA~aTaNT---K~h~apfR---NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG--~qa 427 (630)
T KOG0742|consen 356 GVILHPSLEKRIEDLAIATANT---KKHQAPFR---NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG--AQA 427 (630)
T ss_pred CeecCHHHHHHHHHHHHHhccc---ccccchhh---heeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccc--hHH
Confidence 3555566666664333322111 11122233 6999999999999999999988764332 3332221111 000
Q ss_pred EecCcc--ccceeccceeeecC-ceEEEEcCCCC---------CCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEE
Q 040742 334 VKDSVT--NDYAFEAGAMVLAD-SGLCCIDEFDK---------MSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLA 400 (581)
Q Consensus 334 ~~~~~~--~~~~~~~g~l~~a~-~gil~iDEi~~---------~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~via 400 (581)
+- ... -.|.- .+. |-++||||.|. |+++.. +|...|= +.|.. ..++.++.
T Consensus 428 VT-kiH~lFDWak------kS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLf-------RTGdq---SrdivLvl 490 (630)
T KOG0742|consen 428 VT-KIHKLFDWAK------KSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF-------RTGDQ---SRDIVLVL 490 (630)
T ss_pred HH-HHHHHHHHHh------hcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHH-------Hhccc---ccceEEEe
Confidence 00 000 01110 112 34689999965 333333 3333221 11211 23466777
Q ss_pred eeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccC
Q 040742 401 AANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSG 457 (581)
Q Consensus 401 a~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~ 457 (581)
|+|.++ . ++.+.-||||-++. ++.|.+++...+....++.|..
T Consensus 491 AtNrpg-d------------lDsAV~DRide~ve-FpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 491 ATNRPG-D------------LDSAVNDRIDEVVE-FPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred ccCCcc-c------------hhHHHHhhhhheee-cCCCChHHHHHHHHHHHHHHhc
Confidence 888753 2 77899999998655 6889999999998888887754
No 184
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.62 E-value=1.3e-07 Score=101.17 Aligned_cols=151 Identities=22% Similarity=0.243 Sum_probs=92.7
Q ss_pred HHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcE--E--Ee
Q 040742 245 FRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGI--Y--VC 320 (581)
Q Consensus 245 ~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~--~--~~ 320 (581)
+.+......++++||+.+.+.|..++..++.. ---||.||.|||||++||.+|+.+...- . .+
T Consensus 7 ~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~-------------hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC 73 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVVKTLSNALENGRIA-------------HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPC 73 (515)
T ss_pred HHHhCcccHHHhcccHHHHHHHHHHHHhCcch-------------hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcc
Confidence 34444555577899999999999999987421 1589999999999999999999985321 0 11
Q ss_pred cCC-----CccCCceeEEEecCc--ccc---ceecc---ceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeC
Q 040742 321 GNA-----TTKAGLTVAVVKDSV--TND---YAFEA---GAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKA 386 (581)
Q Consensus 321 ~~~-----~~~~~l~~~~~~~~~--~~~---~~~~~---g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~ 386 (581)
|.- ........-+..|.. +|- ..+.. -+-+.+...|.+|||++.++.... +|+.-+|+-
T Consensus 74 ~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP------- 146 (515)
T COG2812 74 GKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP------- 146 (515)
T ss_pred hhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC-------
Confidence 110 000001111111111 010 00000 011223457999999999998876 898877652
Q ss_pred CeeEeeCCCe-EEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcC
Q 040742 387 GLVASLSART-SVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILL 436 (581)
Q Consensus 387 g~~~~~~~~~-~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~ 436 (581)
|..+ .++||++|.. ++..++||+ ..|.+.
T Consensus 147 ------P~hV~FIlATTe~~K--------------ip~TIlSRc-q~f~fk 176 (515)
T COG2812 147 ------PSHVKFILATTEPQK--------------IPNTILSRC-QRFDFK 176 (515)
T ss_pred ------ccCeEEEEecCCcCc--------------Cchhhhhcc-cccccc
Confidence 2333 4677878743 999999998 545443
No 185
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.6e-07 Score=97.83 Aligned_cols=198 Identities=14% Similarity=0.139 Sum_probs=117.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC------cEEEecCCCccC-Ccee----EEEecCccccceec-----cceee-ecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR------GIYVCGNATTKA-GLTV----AVVKDSVTNDYAFE-----AGAMV-LAD 353 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~------~~~~~~~~~~~~-~l~~----~~~~~~~~~~~~~~-----~g~l~-~a~ 353 (581)
|++++|+||||||..++++++.+.. .+|++....... .... ....-+..|.-..+ ...+. ...
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~ 123 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGK 123 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCC
Confidence 7999999999999999999988743 255554432111 0000 00000111100000 00000 112
Q ss_pred ceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEe
Q 040742 354 SGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLV 432 (581)
Q Consensus 354 ~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli 432 (581)
.-|+++||+|.+....+ .|++......- ...++.+++.+|...-.. .+++.+.+||...
T Consensus 124 ~~IvvLDEid~L~~~~~~~LY~L~r~~~~----------~~~~v~vi~i~n~~~~~~----------~ld~rv~s~l~~~ 183 (366)
T COG1474 124 TVIVILDEVDALVDKDGEVLYSLLRAPGE----------NKVKVSIIAVSNDDKFLD----------YLDPRVKSSLGPS 183 (366)
T ss_pred eEEEEEcchhhhccccchHHHHHHhhccc----------cceeEEEEEEeccHHHHH----------HhhhhhhhccCcc
Confidence 34789999999987654 55555532111 145688999999752111 1777788887655
Q ss_pred EEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHH
Q 040742 433 FILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKY 512 (581)
Q Consensus 433 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~y 512 (581)
-+.+++-+.++...| |+..
T Consensus 184 ~I~F~pY~a~el~~I-------------------------------------------------------------l~~R 202 (366)
T COG1474 184 EIVFPPYTAEELYDI-------------------------------------------------------------LRER 202 (366)
T ss_pred eeeeCCCCHHHHHHH-------------------------------------------------------------HHHH
Confidence 544444444443333 2222
Q ss_pred HHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 513 IAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 513 i~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
...+ .....+++++.+++......-. + .+|....++|.|--.|.-+++..|+++|++
T Consensus 203 ~~~~--~~~~~~~~~vl~lia~~~a~~~---------G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~ 259 (366)
T COG1474 203 VEEG--FSAGVIDDDVLKLIAALVAAES---------G-DARKAIDILRRAGEIAEREGSRKVSEDHVR 259 (366)
T ss_pred HHhh--ccCCCcCccHHHHHHHHHHHcC---------c-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHH
Confidence 2221 1134578888888887655421 1 799999999999999999999999999873
No 186
>PRK09087 hypothetical protein; Validated
Probab=98.60 E-value=4.1e-07 Score=88.83 Aligned_cols=114 Identities=24% Similarity=0.285 Sum_probs=62.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ 370 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~ 370 (581)
.++|+|++|+|||+|++++++... ..|+..... . ... +.....++++|||++.+..+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~-~~~i~~~~~-----~---------~~~------~~~~~~~~l~iDDi~~~~~~~~ 104 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSD-ALLIHPNEI-----G---------SDA------ANAAAEGPVLIEDIDAGGFDET 104 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcC-CEEecHHHc-----c---------hHH------HHhhhcCeEEEECCCCCCCCHH
Confidence 599999999999999999887642 223332110 0 000 0001136899999998753322
Q ss_pred HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhcccc--EeEEcCCCCCHHHHHHH
Q 040742 371 ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD--LVFILLDKPDELLDKRV 447 (581)
Q Consensus 371 ~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFd--li~~~~d~~~~~~d~~i 447 (581)
.|++.+..- ...+..++.|++.....|. ...++|.|||. +++. ...|+.+....+
T Consensus 105 ~lf~l~n~~------------~~~g~~ilits~~~p~~~~---------~~~~dL~SRl~~gl~~~-l~~pd~e~~~~i 161 (226)
T PRK09087 105 GLFHLINSV------------RQAGTSLLMTSRLWPSSWN---------VKLPDLKSRLKAATVVE-IGEPDDALLSQV 161 (226)
T ss_pred HHHHHHHHH------------HhCCCeEEEECCCChHHhc---------cccccHHHHHhCCceee-cCCCCHHHHHHH
Confidence 555544321 0112234444443322333 03688999995 3333 355665555544
No 187
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.60 E-value=1.3e-07 Score=108.44 Aligned_cols=127 Identities=24% Similarity=0.313 Sum_probs=76.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccc-cceeccceeeecCceEEEEcCCCCCCHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTN-DYAFEAGAMVLADSGLCCIDEFDKMSAE 368 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~-~~~~~~g~l~~a~~gil~iDEi~~~~~~ 368 (581)
++||+||||||||+|++++++.++..++ +++.... .......... ...+.. .......++||||++.+...
T Consensus 214 giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~-----~~~~g~~~~~l~~lf~~--a~~~~p~il~iDEid~l~~~ 286 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIM-----SKYYGESEERLREIFKE--AEENAPSIIFIDEIDAIAPK 286 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHh-----cccccHHHHHHHHHHHH--HHhcCCcEEEeehhhhhccc
Confidence 7999999999999999999999876554 4432211 0000000000 000000 00112479999999886422
Q ss_pred -----------HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEE
Q 040742 369 -----------HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFI 434 (581)
Q Consensus 369 -----------~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~ 434 (581)
.+ .|+..|+.-. -...+.||+|+|+... +++++.+ |||..+.
T Consensus 287 r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~atn~~~~-------------ld~al~r~gRfd~~i~ 342 (733)
T TIGR01243 287 REEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGATNRPDA-------------LDPALRRPGRFDREIV 342 (733)
T ss_pred ccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEeecCChhh-------------cCHHHhCchhccEEEE
Confidence 22 5666665311 1235788999998631 7888886 9988555
Q ss_pred cCCCCCHHHHHHHHH
Q 040742 435 LLDKPDELLDKRVSE 449 (581)
Q Consensus 435 ~~d~~~~~~d~~i~~ 449 (581)
.+.|+.+....|.+
T Consensus 343 -i~~P~~~~R~~Il~ 356 (733)
T TIGR01243 343 -IRVPDKRARKEILK 356 (733)
T ss_pred -eCCcCHHHHHHHHH
Confidence 56777777666655
No 188
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.58 E-value=1.8e-07 Score=99.86 Aligned_cols=135 Identities=16% Similarity=0.287 Sum_probs=70.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC-----C-cEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP-----R-GIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDK 364 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~-----~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~ 364 (581)
+++|+|+||+|||+|++++++.+. . .+|++...... .+.... .+.....+ . . .+....+++|||++.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~-~~~~~~~~--~-~--~~~~~dlLiiDDi~~ 210 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNAL-RNNKMEEF--K-E--KYRSVDLLLIDDIQF 210 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHH-HcCCHHHH--H-H--HHHhCCEEEEehhhh
Confidence 689999999999999999998752 1 22343321100 000000 00000000 0 0 012346999999998
Q ss_pred CCHH--HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccE-eEEcCCCCC
Q 040742 365 MSAE--HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDL-VFILLDKPD 440 (581)
Q Consensus 365 ~~~~--~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdl-i~~~~d~~~ 440 (581)
+... .+ .|+..++... .....++.|+|.....++ .+.+.|.+||.. ..+....|+
T Consensus 211 l~~~~~~~~~l~~~~n~~~------------~~~~~iiits~~~p~~l~---------~l~~~l~SRl~~g~~v~i~~pd 269 (405)
T TIGR00362 211 LAGKERTQEEFFHTFNALH------------ENGKQIVLTSDRPPKELP---------GLEERLRSRFEWGLVVDIEPPD 269 (405)
T ss_pred hcCCHHHHHHHHHHHHHHH------------HCCCCEEEecCCCHHHHh---------hhhhhhhhhccCCeEEEeCCCC
Confidence 7632 34 5665554211 001123344443211111 267899999963 234457788
Q ss_pred HHHHHHHHHHHHh
Q 040742 441 ELLDKRVSEHIMS 453 (581)
Q Consensus 441 ~~~d~~i~~~il~ 453 (581)
.+....|.+....
T Consensus 270 ~~~r~~il~~~~~ 282 (405)
T TIGR00362 270 LETRLAILQKKAE 282 (405)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776554443
No 189
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.56 E-value=4.4e-08 Score=92.18 Aligned_cols=162 Identities=21% Similarity=0.280 Sum_probs=94.9
Q ss_pred HHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCC
Q 040742 245 FRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNAT 324 (581)
Q Consensus 245 ~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~ 324 (581)
.++...+...+|+|+|+....+....-.|.- .|+++.||||||||+-+.++|+.+-..-|-.+...
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~gnm--------------P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKEGNM--------------PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHcCCC--------------CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 3344455557899999998888776666631 29999999999999999999977633222111100
Q ss_pred -ccCCce-eEEEecCc----cccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeE
Q 040742 325 -TKAGLT-VAVVKDSV----TNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTS 397 (581)
Q Consensus 325 -~~~~l~-~~~~~~~~----~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~ 397 (581)
...+-- ..+++... .....+.+| ...|+++||.|.|....| +|...||=-. ..+.
T Consensus 84 LNASdeRGIDvVRn~IK~FAQ~kv~lp~g-----rhKIiILDEADSMT~gAQQAlRRtMEiyS-------------~ttR 145 (333)
T KOG0991|consen 84 LNASDERGIDVVRNKIKMFAQKKVTLPPG-----RHKIIILDEADSMTAGAQQALRRTMEIYS-------------NTTR 145 (333)
T ss_pred ccCccccccHHHHHHHHHHHHhhccCCCC-----ceeEEEeeccchhhhHHHHHHHHHHHHHc-------------ccch
Confidence 000000 00011100 011112222 356999999999998877 9999997321 1245
Q ss_pred EEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhcc
Q 040742 398 VLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHS 456 (581)
Q Consensus 398 viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~ 456 (581)
+..|+|... ++=+++-||+.+... +.-.|..+...+++...
T Consensus 146 FalaCN~s~-------------KIiEPIQSRCAiLRy-----sklsd~qiL~Rl~~v~k 186 (333)
T KOG0991|consen 146 FALACNQSE-------------KIIEPIQSRCAILRY-----SKLSDQQILKRLLEVAK 186 (333)
T ss_pred hhhhhcchh-------------hhhhhHHhhhHhhhh-----cccCHHHHHHHHHHHHH
Confidence 666778642 156788889854322 22234455555555443
No 190
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4e-07 Score=89.83 Aligned_cols=135 Identities=21% Similarity=0.322 Sum_probs=78.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceee-----------ecCce--E
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMV-----------LADSG--L 356 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~-----------~a~~g--i 356 (581)
--+||.||||||||+|.+++|+-+.- .+.+... .+....+.-...-.+|--+.|.++ ...+. .
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSI--R~~~~y~--~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSI--RTNDRYY--KGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhhee--eecCccc--cceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence 36999999999999999999987742 2222221 111111110000123333333332 11222 3
Q ss_pred EEEcCCCCCCHHH----------------HHHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcC
Q 040742 357 CCIDEFDKMSAEH----------------QALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLK 420 (581)
Q Consensus 357 l~iDEi~~~~~~~----------------~~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~ 420 (581)
++|||++.+.... .+++.-|++ .+...++.++||+|....
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr-----------lK~~~NvliL~TSNl~~s------------- 309 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR-----------LKRYPNVLILATSNLTDS------------- 309 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH-----------hccCCCEEEEeccchHHH-------------
Confidence 5689997654221 144544443 122356899999997531
Q ss_pred CChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 421 MSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 421 l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
++.||.||-|+++. ..+|..+....|.+..+.
T Consensus 310 iD~AfVDRADi~~y-VG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 310 IDVAFVDRADIVFY-VGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HHHHhhhHhhheee-cCCccHHHHHHHHHHHHH
Confidence 88999999999776 577887777766555443
No 191
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.54 E-value=9.4e-08 Score=103.36 Aligned_cols=134 Identities=19% Similarity=0.328 Sum_probs=69.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC------cEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR------GIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDK 364 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~ 364 (581)
+++|+||||+|||+|++++++.+.. .+|++..... ..+.... .......+ . -.+..-.+++|||++.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~-~~~~~~~-~~~~~~~~--~---~~~~~~dlLiiDDi~~ 222 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT-NDFVNAL-RNNTMEEF--K---EKYRSVDVLLIDDIQF 222 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHHHH-HcCcHHHH--H---HHHhcCCEEEEehhhh
Confidence 6999999999999999999987622 2234332210 0000000 00000000 0 0111345999999998
Q ss_pred CCHH--HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccE-eEEcCCCCC
Q 040742 365 MSAE--HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDL-VFILLDKPD 440 (581)
Q Consensus 365 ~~~~--~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdl-i~~~~d~~~ 440 (581)
+... .+ .|+..++...- .| ...++++..++. .+. .+.+.|.+||.- ..+-...|+
T Consensus 223 l~~~~~~~~~l~~~~n~l~~----~~-------~~iiits~~~p~-~l~---------~l~~~l~SRl~~gl~v~i~~pd 281 (450)
T PRK00149 223 LAGKERTQEEFFHTFNALHE----AG-------KQIVLTSDRPPK-ELP---------GLEERLRSRFEWGLTVDIEPPD 281 (450)
T ss_pred hcCCHHHHHHHHHHHHHHHH----CC-------CcEEEECCCCHH-HHH---------HHHHHHHhHhcCCeeEEecCCC
Confidence 7632 33 55555432110 01 123444444431 111 167899999952 233346777
Q ss_pred HHHHHHHHHHHH
Q 040742 441 ELLDKRVSEHIM 452 (581)
Q Consensus 441 ~~~d~~i~~~il 452 (581)
.+....|.+...
T Consensus 282 ~~~r~~il~~~~ 293 (450)
T PRK00149 282 LETRIAILKKKA 293 (450)
T ss_pred HHHHHHHHHHHH
Confidence 777666644433
No 192
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.51 E-value=5.7e-07 Score=93.42 Aligned_cols=164 Identities=21% Similarity=0.219 Sum_probs=87.7
Q ss_pred chHHHHHHHhhCccccccHH-HHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEe
Q 040742 242 SDIFRQIVQSICPSIYGHEL-VKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVC 320 (581)
Q Consensus 242 ~~~~~~l~~s~~p~I~G~e~-vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~ 320 (581)
+++.+.|+.|+.-+--+.+. .|...+..++.- +..+.|++++||||||||+|+.++.... ...+
T Consensus 173 dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~f------------ve~~~Nli~lGp~GTGKThla~~l~~~~---a~~s 237 (449)
T TIGR02688 173 EEWIDVLIRSIGYEPEGFEARQKLLLLARLLPL------------VEPNYNLIELGPKGTGKSYIYNNLSPYV---ILIS 237 (449)
T ss_pred HHHHHHHHHhcCCCcccCChHHHHHHHHhhHHH------------HhcCCcEEEECCCCCCHHHHHHHHhHHH---HHHc
Confidence 45678889987544444332 222222222111 1122499999999999999999987651 0122
Q ss_pred cCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCH----HHH-HHHHHHHccEEEEeeCCeeEeeCCC
Q 040742 321 GNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSA----EHQ-ALLEAMEQQCVSVAKAGLVASLSAR 395 (581)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~----~~~-~L~~~me~~~i~i~k~g~~~~~~~~ 395 (581)
|...+.+.|..... + -..|.+ +.-.+++|||+..++- +.. .|...|++|.++.. ......++.
T Consensus 238 G~f~T~a~Lf~~L~----~----~~lg~v--~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG--~~~~~a~as 305 (449)
T TIGR02688 238 GGTITVAKLFYNIS----T----RQIGLV--GRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRG--DETKSSDAS 305 (449)
T ss_pred CCcCcHHHHHHHHH----H----HHHhhh--ccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceecc--ceeeeeeeE
Confidence 32223333322111 0 112222 2346899999999652 233 67788999999874 334444555
Q ss_pred eEEEEeeCCCCCCCCCcc----ChhhhcCCChhhhccccEeE
Q 040742 396 TSVLAAANPVGGHYNRAK----TVNENLKMSAALLSRFDLVF 433 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~----~~~~~~~l~~all~RFdli~ 433 (581)
+.+++-.|.......+.. ++.+... +.||+|||...+
T Consensus 306 ~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~-DsAflDRiH~yi 346 (449)
T TIGR02688 306 FVFLGNVPLTSEHMVKNSDLFSPLPEFMR-DSAFLDRIHGYL 346 (449)
T ss_pred EEEEcccCCcchhhcCcccccccCChhhh-hhHHHHhhhccC
Confidence 566665553211111111 1222223 668888885433
No 193
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.50 E-value=2.3e-07 Score=99.36 Aligned_cols=128 Identities=17% Similarity=0.258 Sum_probs=66.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC----CcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP----RGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~ 366 (581)
+++|+||||+|||+|++++++.+. +.+|++...... .+.... . .+.. ..-.-......+++|||++.+.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~~~~~l-~---~~~~--~~f~~~~~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-HLVSAI-R---SGEM--QRFRQFYRNVDALFIEDIEVFS 215 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-HHHHHH-h---cchH--HHHHHHcccCCEEEEcchhhhc
Confidence 699999999999999999998652 233443321110 000000 0 0000 0000011245799999999986
Q ss_pred H--HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhcccc--EeEEcCCCCCH
Q 040742 367 A--EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD--LVFILLDKPDE 441 (581)
Q Consensus 367 ~--~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFd--li~~~~d~~~~ 441 (581)
. ..+ .|+..+....- . .-.+|.|+|.....+. .+.+.|.+||. +++- ...|+.
T Consensus 216 ~k~~~qeelf~l~N~l~~-----------~-~k~IIlts~~~p~~l~---------~l~~rL~SR~~~Gl~~~-l~~pd~ 273 (445)
T PRK12422 216 GKGATQEEFFHTFNSLHT-----------E-GKLIVISSTCAPQDLK---------AMEERLISRFEWGIAIP-LHPLTK 273 (445)
T ss_pred CChhhHHHHHHHHHHHHH-----------C-CCcEEEecCCCHHHHh---------hhHHHHHhhhcCCeEEe-cCCCCH
Confidence 4 234 55555442110 0 1124444443211111 27899999995 5444 345666
Q ss_pred HHHHHH
Q 040742 442 LLDKRV 447 (581)
Q Consensus 442 ~~d~~i 447 (581)
+....+
T Consensus 274 e~r~~i 279 (445)
T PRK12422 274 EGLRSF 279 (445)
T ss_pred HHHHHH
Confidence 555554
No 194
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.8e-07 Score=88.96 Aligned_cols=132 Identities=26% Similarity=0.387 Sum_probs=80.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeeec---CceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLA---DSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a---~~gil~iDEi~~~~ 366 (581)
.+||+||||||||.||+++|+.....+. ++|... ......+ |... ....++.| ...|+|.||||.+.
T Consensus 183 GvlLygppgtGktLlaraVahht~c~firvsgsel-----vqk~ige---gsrm-vrelfvmarehapsiifmdeidsig 253 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL-----VQKYIGE---GSRM-VRELFVMAREHAPSIIFMDEIDSIG 253 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhhcceEEEEechHHH-----HHHHhhh---hHHH-HHHHHHHHHhcCCceEeeecccccc
Confidence 6999999999999999999988765443 555332 1111100 1110 00111222 25799999998864
Q ss_pred H-----------HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhh--ccccEe
Q 040742 367 A-----------EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALL--SRFDLV 432 (581)
Q Consensus 367 ~-----------~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all--~RFdli 432 (581)
. +.| .+++.+.+-. |.. ...++-||.|+|... -+++||+ .|.|--
T Consensus 254 s~r~e~~~ggdsevqrtmlellnqld------gfe--atknikvimatnrid-------------ild~allrpgridrk 312 (404)
T KOG0728|consen 254 SSRVESGSGGDSEVQRTMLELLNQLD------GFE--ATKNIKVIMATNRID-------------ILDPALLRPGRIDRK 312 (404)
T ss_pred cccccCCCCccHHHHHHHHHHHHhcc------ccc--cccceEEEEeccccc-------------cccHhhcCCCccccc
Confidence 3 256 7888887622 222 233567899999752 1778888 477765
Q ss_pred EEcCCCCCHHHHHHHHHHHHhhccC
Q 040742 433 FILLDKPDELLDKRVSEHIMSLHSG 457 (581)
Q Consensus 433 ~~~~d~~~~~~d~~i~~~il~~~~~ 457 (581)
+- ++.|+++....| +..|.+
T Consensus 313 ie-fp~p~e~ar~~i----lkihsr 332 (404)
T KOG0728|consen 313 IE-FPPPNEEARLDI----LKIHSR 332 (404)
T ss_pred cc-CCCCCHHHHHHH----HHHhhh
Confidence 54 456777666655 555543
No 195
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.49 E-value=5.6e-07 Score=91.39 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=36.7
Q ss_pred hCccccccHHHHHHHH--HHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 252 ICPSIYGHELVKAGIT--LALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 252 ~~p~I~G~e~vk~~ll--l~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+..++||..+++|.- +.++...+ +.| -.+||.||||||||.||-++|+.++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K----------~aG-r~iLiaGppGtGKTAlA~~ia~eLG~ 76 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGK----------IAG-RAILIAGPPGTGKTALAMAIAKELGE 76 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT------------TT--EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred ccccccChHHHHHHHHHHHHHHhccc----------ccC-cEEEEeCCCCCCchHHHHHHHHHhCC
Confidence 3457999999999764 44443210 111 27999999999999999999999863
No 196
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.3e-07 Score=93.31 Aligned_cols=169 Identities=20% Similarity=0.198 Sum_probs=94.3
Q ss_pred cccccHHHHHHHHHHHhcCcccc-c-CCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEE-ecCCCccCCcee
Q 040742 255 SIYGHELVKAGITLALFGGVRKH-S-MYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYV-CGNATTKAGLTV 331 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g~~~~-~-~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~-~~~~~~~~~l~~ 331 (581)
.+.=...+|+.|.-.|..-.... - .+-++.=.|| -||+||||||||+++.|+|..+.-.+|. .-..
T Consensus 202 TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRG---YLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~-------- 270 (457)
T KOG0743|consen 202 TLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRG---YLLYGPPGTGKSSFIAAMANYLNYDIYDLELTE-------- 270 (457)
T ss_pred ccccChhHHHHHHHHHHHHHhcchHHHhcCcchhcc---ceeeCCCCCCHHHHHHHHHhhcCCceEEeeecc--------
Confidence 34445667777765553211000 0 0011112355 9999999999999999999999988872 2111
Q ss_pred EEEecCccccceeccceeeecCceEEEEcCCCCCCH---HHHHHHHHH--HccEEEEe-----eCCeeEeeCCCeEEEEe
Q 040742 332 AVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSA---EHQALLEAM--EQQCVSVA-----KAGLVASLSARTSVLAA 401 (581)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~---~~~~L~~~m--e~~~i~i~-----k~g~~~~~~~~~~viaa 401 (581)
+.+. .+ +.--.+...+..|++|.+||..-. ..+.=.+.. ....+++. -+|.+..--..-.|+.|
T Consensus 271 --v~~n--~d--Lr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFT 344 (457)
T KOG0743|consen 271 --VKLD--SD--LRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFT 344 (457)
T ss_pred --ccCc--HH--HHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEe
Confidence 1110 11 111223344678999999987522 000000000 01122222 11443332223456777
Q ss_pred eCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHHhh
Q 040742 402 ANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIMSL 454 (581)
Q Consensus 402 ~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il~~ 454 (581)
||-.+ +|+|||++ |.|+.+. ..+-..+.-+.+++..+..
T Consensus 345 TNh~E-------------kLDPALlRpGRmDmhI~-mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 345 TNHKE-------------KLDPALLRPGRMDMHIY-MGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred cCChh-------------hcCHhhcCCCcceeEEE-cCCCCHHHHHHHHHHhcCC
Confidence 78653 29999999 9999766 4677777778887776664
No 197
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.45 E-value=3.4e-07 Score=100.00 Aligned_cols=132 Identities=16% Similarity=0.302 Sum_probs=72.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC------cEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR------GIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDK 364 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~ 364 (581)
.++|+|++|+|||+|+.++++.+.. .+|++..... ..+.... .+.....+ . -.+.+-.+|+||||+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~-~el~~al-~~~~~~~f--~---~~y~~~DLLlIDDIq~ 388 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT-NEFINSI-RDGKGDSF--R---RRYREMDILLVDDIQF 388 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHHHH-HhccHHHH--H---HHhhcCCEEEEehhcc
Confidence 4999999999999999999987621 2344432211 0111000 00000000 0 0112347999999999
Q ss_pred CCHH--HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhcccc--EeEEcCCCC
Q 040742 365 MSAE--HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD--LVFILLDKP 439 (581)
Q Consensus 365 ~~~~--~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFd--li~~~~d~~ 439 (581)
+... .+ .|+..++... ..+..+|.|+|.....+. .+.+.|.+||. +++- ...|
T Consensus 389 l~gke~tqeeLF~l~N~l~------------e~gk~IIITSd~~P~eL~---------~l~~rL~SRf~~GLvv~-I~~P 446 (617)
T PRK14086 389 LEDKESTQEEFFHTFNTLH------------NANKQIVLSSDRPPKQLV---------TLEDRLRNRFEWGLITD-VQPP 446 (617)
T ss_pred ccCCHHHHHHHHHHHHHHH------------hcCCCEEEecCCChHhhh---------hccHHHHhhhhcCceEE-cCCC
Confidence 8642 34 6776665421 112235556665422221 27889999995 3333 4567
Q ss_pred CHHHHHHHHHHH
Q 040742 440 DELLDKRVSEHI 451 (581)
Q Consensus 440 ~~~~d~~i~~~i 451 (581)
+.+....|....
T Consensus 447 D~EtR~aIL~kk 458 (617)
T PRK14086 447 ELETRIAILRKK 458 (617)
T ss_pred CHHHHHHHHHHH
Confidence 777766664433
No 198
>PHA01747 putative ATP-dependent protease
Probab=98.43 E-value=3.9e-06 Score=84.80 Aligned_cols=168 Identities=16% Similarity=0.180 Sum_probs=100.8
Q ss_pred HHHHHHhhCccccccH-HHHH--HHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEec
Q 040742 245 FRQIVQSICPSIYGHE-LVKA--GITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCG 321 (581)
Q Consensus 245 ~~~l~~s~~p~I~G~e-~vk~--~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~ 321 (581)
.+.|+.|+..+--+.. ..|. .+|.-|+--.+... ...+.|++=.||+|||||++.+.+.+..|..+ +|
T Consensus 150 iDlLlrSiGyeP~~~~~r~k~~~l~L~RLiPlVE~~~-------~~~NyNliELgPRGTGKS~~f~eis~fsp~~i--SG 220 (425)
T PHA01747 150 YDDLLAAFGYDTDKMIRNDAVNRLTLPRLLPLFTSPV-------SKRPVHIIELSNRGTGKTTTFVILQELFNFRY--YT 220 (425)
T ss_pred HHHHHHhcCCCccccCHHHHHHHHHHHhhhhheeccC-------CCCCeeEEEecCCCCChhhHHHHhhhcCCcee--eC
Confidence 5778888755544432 2233 44444443322111 01236999999999999999999988877766 55
Q ss_pred CCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC-H---HHH-HHHHHHHccEEEEeeCCeeE--eeCC
Q 040742 322 NATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS-A---EHQ-ALLEAMEQQCVSVAKAGLVA--SLSA 394 (581)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~-~---~~~-~L~~~me~~~i~i~k~g~~~--~~~~ 394 (581)
...+.+.|. .+..++ ..|.+.+. .++++||+..+. + +.. .|...|++|.++..+.+... +..+
T Consensus 221 G~~TvA~LF----yN~~t~----~~GLVg~~--D~VaFDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a 290 (425)
T PHA01747 221 EPPTYANLV----YDAKTN----ALGLVFLS--NGLIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVR 290 (425)
T ss_pred CCCchHHhe----EecCCC----ceeEEeec--cEEEEEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhcc
Confidence 555555543 333233 34555443 579999999876 2 233 66788999999986543333 5566
Q ss_pred CeEEEEeeCCCC---CCCCCccChhhhc-------CCChhhhccccE
Q 040742 395 RTSVLAAANPVG---GHYNRAKTVNENL-------KMSAALLSRFDL 431 (581)
Q Consensus 395 ~~~viaa~Np~~---g~~~~~~~~~~~~-------~l~~all~RFdl 431 (581)
.++++...|+.. ++|.....+.+-+ .+..||||||.+
T Consensus 291 ~asiVf~GNin~~~l~~~~~~~~l~~~Lp~~~~~r~~~sA~LDRIhi 337 (425)
T PHA01747 291 CIPIIFAGNPDSSTLDTYQTPNYIKNYLVSYELFQSLTKAILDRIAI 337 (425)
T ss_pred ceeEEEecCCCCccccccccchhHHHhcchhhhhcccchHHhhhhhh
Confidence 777888777652 2222111011111 137899999963
No 199
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.42 E-value=3.2e-07 Score=82.54 Aligned_cols=108 Identities=27% Similarity=0.385 Sum_probs=69.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE--EEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI--YVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE 368 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~ 368 (581)
+|||+|+|||||+.+|++++....+.. ++.... ..+ . ...+..+.+|+++|+|++.++++
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~---~~~---------~------~~~l~~a~~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDC---ASL---------P------AELLEQAKGGTLYLKNIDRLSPE 84 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCH---HCT---------C------HHHHHHCTTSEEEEECGCCS-HH
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEech---hhC---------c------HHHHHHcCCCEEEECChHHCCHH
Confidence 899999999999999999999876521 110000 000 0 11122347899999999999999
Q ss_pred HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEE
Q 040742 369 HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFI 434 (581)
Q Consensus 369 ~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~ 434 (581)
.| .|.+.++... ..++.+|+++...- ..+.++-.+.+.|+.||+.+.+
T Consensus 85 ~Q~~L~~~l~~~~------------~~~~RlI~ss~~~l------~~l~~~~~~~~~L~~~l~~~~i 133 (138)
T PF14532_consen 85 AQRRLLDLLKRQE------------RSNVRLIASSSQDL------EELVEEGRFSPDLYYRLSQLEI 133 (138)
T ss_dssp HHHHHHHHHHHCT------------TTTSEEEEEECC-C------CCHHHHSTHHHHHHHHCSTCEE
T ss_pred HHHHHHHHHHhcC------------CCCeEEEEEeCCCH------HHHhhccchhHHHHHHhCCCEE
Confidence 88 8889887521 34567788877642 1222333477899999875544
No 200
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.39 E-value=2.5e-07 Score=99.44 Aligned_cols=137 Identities=15% Similarity=0.268 Sum_probs=70.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC-----Cc-EEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP-----RG-IYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDK 364 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~-----~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~ 364 (581)
+++|+|++|+|||+|++++++.+. .. +|++...... .+..+. ... .+.. +.-.-...+..+++|||++.
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~~l-~~~-~~~~--~~~~~~~~~~dvLiIDDiq~ 217 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVDIL-QKT-HKEI--EQFKNEICQNDVLIIDDVQF 217 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHH-HHh-hhHH--HHHHHHhccCCEEEEecccc
Confidence 699999999999999999988542 12 2343322100 000000 000 0000 00000012346999999998
Q ss_pred CC--HHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhcccc-EeEEcCCCCC
Q 040742 365 MS--AEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD-LVFILLDKPD 440 (581)
Q Consensus 365 ~~--~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFd-li~~~~d~~~ 440 (581)
+. ...+ .|+..++... ..+-.+|.|+|.....+. .+.+.|.+||. -..+-...|+
T Consensus 218 l~~k~~~~e~lf~l~N~~~------------~~~k~iIltsd~~P~~l~---------~l~~rL~SR~~~Gl~~~L~~pd 276 (450)
T PRK14087 218 LSYKEKTNEIFFTIFNNFI------------ENDKQLFFSSDKSPELLN---------GFDNRLITRFNMGLSIAIQKLD 276 (450)
T ss_pred ccCCHHHHHHHHHHHHHHH------------HcCCcEEEECCCCHHHHh---------hccHHHHHHHhCCceeccCCcC
Confidence 87 3344 5666554321 001134555554321111 27899999995 2233345677
Q ss_pred HHHHHHHHHHHHh
Q 040742 441 ELLDKRVSEHIMS 453 (581)
Q Consensus 441 ~~~d~~i~~~il~ 453 (581)
.+....+..+.+.
T Consensus 277 ~e~r~~iL~~~~~ 289 (450)
T PRK14087 277 NKTATAIIKKEIK 289 (450)
T ss_pred HHHHHHHHHHHHH
Confidence 7666666444443
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.39 E-value=3.9e-07 Score=80.96 Aligned_cols=128 Identities=24% Similarity=0.247 Sum_probs=65.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc---EE-EecCCCccCCcee----EEEecCc-cccceeccceeeecC---ceEEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG---IY-VCGNATTKAGLTV----AVVKDSV-TNDYAFEAGAMVLAD---SGLCC 358 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~---~~-~~~~~~~~~~l~~----~~~~~~~-~~~~~~~~g~l~~a~---~gil~ 358 (581)
+++|+||||||||++++.++..+... +. ++........... ....... ..........+..+. ..+++
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 89999999999999999999998764 33 3332211110000 0000000 000000111122222 28999
Q ss_pred EcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEc
Q 040742 359 IDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFIL 435 (581)
Q Consensus 359 iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~ 435 (581)
+||++.+..... ........ ..............+++++|+. .. ..+..+..|++..+.+
T Consensus 84 iDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~--~~----------~~~~~~~~~~~~~~~~ 144 (148)
T smart00382 84 LDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTNDE--KD----------LGPALLRRRFDRRIVL 144 (148)
T ss_pred EECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCCC--cc----------CchhhhhhccceEEEe
Confidence 999999986544 32221100 0000111223457889999951 11 1556666788776654
No 202
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=1.9e-06 Score=89.51 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=40.9
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
..++||+.++..+..++..|... -.+||.||+|+|||++++.+++.+.
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~-------------ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLH-------------HALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCC-------------eeEeeECCCCCCHHHHHHHHHHHHc
Confidence 56899999999999999887421 1499999999999999999998874
No 203
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.39 E-value=1e-06 Score=85.73 Aligned_cols=172 Identities=23% Similarity=0.336 Sum_probs=91.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC----C--CcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS----P--RGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDK 364 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~----~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~ 364 (581)
.++|+|++|+|||+|+.++++.+ + +.+|++....... +... .. .+.+ ..-.-.+..-.+++||+++.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-~~~~-~~---~~~~--~~~~~~~~~~DlL~iDDi~~ 108 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-FADA-LR---DGEI--EEFKDRLRSADLLIIDDIQF 108 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-HHHH-HH---TTSH--HHHHHHHCTSSEEEEETGGG
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-HHHH-HH---cccc--hhhhhhhhcCCEEEEecchh
Confidence 69999999999999999998764 2 2234443221000 0000 00 0000 00001123457999999999
Q ss_pred CCHH--HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccE--eEEcCCCC
Q 040742 365 MSAE--HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDL--VFILLDKP 439 (581)
Q Consensus 365 ~~~~--~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdl--i~~~~d~~ 439 (581)
+... .+ .|+..++.-. ...-.+|.|++.....+. .+.+.|.|||.. ++- ...|
T Consensus 109 l~~~~~~q~~lf~l~n~~~------------~~~k~li~ts~~~P~~l~---------~~~~~L~SRl~~Gl~~~-l~~p 166 (219)
T PF00308_consen 109 LAGKQRTQEELFHLFNRLI------------ESGKQLILTSDRPPSELS---------GLLPDLRSRLSWGLVVE-LQPP 166 (219)
T ss_dssp GTTHHHHHHHHHHHHHHHH------------HTTSEEEEEESS-TTTTT---------TS-HHHHHHHHCSEEEE-E---
T ss_pred hcCchHHHHHHHHHHHHHH------------hhCCeEEEEeCCCCcccc---------ccChhhhhhHhhcchhh-cCCC
Confidence 9854 35 6666665311 011224444443222221 278899999964 333 2455
Q ss_pred CHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 040742 440 DELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTF 519 (581)
Q Consensus 440 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~ 519 (581)
+.+....+ +++... .+
T Consensus 167 d~~~r~~i-------------------------------------------------------------l~~~a~--~~- 182 (219)
T PF00308_consen 167 DDEDRRRI-------------------------------------------------------------LQKKAK--ER- 182 (219)
T ss_dssp -HHHHHHH-------------------------------------------------------------HHHHHH--HT-
T ss_pred CHHHHHHH-------------------------------------------------------------HHHHHH--Hh-
Confidence 55554444 222221 11
Q ss_pred CCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhc
Q 040742 520 VFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARL 569 (581)
Q Consensus 520 i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l 569 (581)
.-.+++++.++|...+ +-++|.|++++.--.++|.+
T Consensus 183 -~~~l~~~v~~~l~~~~-------------~~~~r~L~~~l~~l~~~~~~ 218 (219)
T PF00308_consen 183 -GIELPEEVIEYLARRF-------------RRDVRELEGALNRLDAYAQL 218 (219)
T ss_dssp -T--S-HHHHHHHHHHT-------------TSSHHHHHHHHHHHHHHHHH
T ss_pred -CCCCcHHHHHHHHHhh-------------cCCHHHHHHHHHHHHHHhhc
Confidence 2258899998888732 34899999999888887765
No 204
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4.6e-06 Score=93.01 Aligned_cols=206 Identities=15% Similarity=0.199 Sum_probs=122.4
Q ss_pred hCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC-cEE--EecCCC---c
Q 040742 252 ICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR-GIY--VCGNAT---T 325 (581)
Q Consensus 252 ~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~-~~~--~~~~~~---~ 325 (581)
+.| ++|.+.-.+.++.-|...++. |-+|+|+||+|||.++..+|...-. .+- ..+... .
T Consensus 169 lDP-vIGRd~EI~r~iqIL~RR~KN--------------NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 169 LDP-VIGRDEEIRRTIQILSRRTKN--------------NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCC-CcChHHHHHHHHHHHhccCCC--------------CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 444 788888888777767655321 7899999999999999999976521 110 000000 0
Q ss_pred cCCceeEEEecCccccceecc----ceeeecCceEEEEcCCCCCCH---------HHH-HHHHHHHccEEEEeeCCeeEe
Q 040742 326 KAGLTVAVVKDSVTNDYAFEA----GAMVLADSGLCCIDEFDKMSA---------EHQ-ALLEAMEQQCVSVAKAGLVAS 391 (581)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~----g~l~~a~~gil~iDEi~~~~~---------~~~-~L~~~me~~~i~i~k~g~~~~ 391 (581)
...+.++.. ..|+|.-.- ..+..+.+-|+||||++.+-. +.. .|..+|..|.
T Consensus 234 ~g~LvAGak---yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe----------- 299 (786)
T COG0542 234 LGSLVAGAK---YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE----------- 299 (786)
T ss_pred HHHHhcccc---ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-----------
Confidence 111111111 123332111 112223456899999977431 122 3334554444
Q ss_pred eCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccc
Q 040742 392 LSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTA 471 (581)
Q Consensus 392 ~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 471 (581)
..+|+||...+. ...+.=++||-+||--+++ +.|+.+.-..|.+-+-..+..++.
T Consensus 300 ----L~~IGATT~~EY--------Rk~iEKD~AL~RRFQ~V~V--~EPs~e~ti~ILrGlk~~yE~hH~----------- 354 (786)
T COG0542 300 ----LRCIGATTLDEY--------RKYIEKDAALERRFQKVLV--DEPSVEDTIAILRGLKERYEAHHG----------- 354 (786)
T ss_pred ----eEEEEeccHHHH--------HHHhhhchHHHhcCceeeC--CCCCHHHHHHHHHHHHHHHHHccC-----------
Confidence 345666665421 1233468999999976554 889988877776666554443221
Q ss_pred cCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCc-CCHHHHHHHHHHHHHHhh
Q 040742 472 YHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPR-MTKPAAEILQKFYLKLRD 541 (581)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~-ls~~a~~~i~~~y~~lR~ 541 (581)
-.++.+-|..-..++.++|.-+ |++.|.+++...-..+|-
T Consensus 355 ------------------------------V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 355 ------------------------------VRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred ------------------------------ceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHh
Confidence 2355566777777777776544 899999999988777664
No 205
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=3.1e-06 Score=88.44 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=40.3
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+|+||+.+++.+..++..|... | +||.||+|+||+++|.++|+.+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~--------------HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLH--------------HAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCC--------------ceEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999988887421 5 9999999999999999999876
No 206
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=98.37 E-value=8.3e-06 Score=85.40 Aligned_cols=169 Identities=21% Similarity=0.247 Sum_probs=104.2
Q ss_pred chHHHHHHHhhCccccccH-HHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEe
Q 040742 242 SDIFRQIVQSICPSIYGHE-LVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVC 320 (581)
Q Consensus 242 ~~~~~~l~~s~~p~I~G~e-~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~ 320 (581)
..+.+.|+.|+..+--+.+ ..|..++.-|+--.+ .+.|++=.||.|||||++-+.+. |.+..++
T Consensus 172 eEWiD~LlrS~G~eP~~~~~r~Kl~~L~RLiPlVE------------~N~NliELgPrGTGKS~vy~eiS---p~~~liS 236 (457)
T PF13337_consen 172 EEWIDLLLRSIGYEPSGFSERQKLLLLARLIPLVE------------RNYNLIELGPRGTGKSYVYKEIS---PYGILIS 236 (457)
T ss_pred HHHHHHHHHhcCCCccccCHHHHHHHHHhHHHhcc------------cccceEEEcCCCCCceeehhhcC---cccEEEE
Confidence 5577889999754433332 455566665664432 23599999999999999976544 5566688
Q ss_pred cCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC---HH-HHHHHHHHHccEEEEeeCCeeEeeCCCe
Q 040742 321 GNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS---AE-HQALLEAMEQQCVSVAKAGLVASLSART 396 (581)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~---~~-~~~L~~~me~~~i~i~k~g~~~~~~~~~ 396 (581)
|...|.+.|.... .++ ..|.+.. ..++++||+..+. ++ .+.|-..|++|.++..+ . +..+..
T Consensus 237 GG~~T~A~LFyn~----~~~----~~GlV~~--~D~VafDEv~~i~f~d~d~i~imK~YMesG~fsRG~--~--~i~a~a 302 (457)
T PF13337_consen 237 GGQVTVAKLFYNM----STG----QIGLVGR--WDVVAFDEVAGIKFKDKDEIQIMKDYMESGSFSRGK--E--EINADA 302 (457)
T ss_pred CCCcchHHheeec----cCC----cceeeee--ccEEEEEeccCcccCChHHHHHHHHHHhccceeecc--c--ccccce
Confidence 8777766665332 222 3455544 3589999998876 22 23778899999999853 2 444556
Q ss_pred EEEEeeCCCC--CCCCCccChh----hhcCCChhhhccccEeEEcCCCCC
Q 040742 397 SVLAAANPVG--GHYNRAKTVN----ENLKMSAALLSRFDLVFILLDKPD 440 (581)
Q Consensus 397 ~viaa~Np~~--g~~~~~~~~~----~~~~l~~all~RFdli~~~~d~~~ 440 (581)
+++...|... ........+. +... +.||+|||...+.-++.|.
T Consensus 303 s~vf~GNi~~~v~~~~~~~~lf~~lP~~~~-DsAflDRiH~~iPGWeiPk 351 (457)
T PF13337_consen 303 SMVFVGNINQSVENMLKTSHLFEPLPEEMR-DSAFLDRIHGYIPGWEIPK 351 (457)
T ss_pred eEEEEcCcCCcchhccccchhhhhcCHHHH-HHHHHhHhheeccCccccc
Confidence 6666666541 1111111222 2223 7899999866444334443
No 207
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.36 E-value=9.7e-08 Score=92.69 Aligned_cols=113 Identities=23% Similarity=0.267 Sum_probs=81.2
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHHC-------CCcEEEecCCCcc----CCceeEEEecCccccceeccceeeecCceEE
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAVS-------PRGIYVCGNATTK----AGLTVAVVKDSVTNDYAFEAGAMVLADSGLC 357 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~~-------~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil 357 (581)
..++||.||+|.|||.|++.+.++- ++-+.++....-. ..|. ..++...+|...-.+|.+--|++|++
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalf-ghvkgaftga~~~r~gllrsadggml 286 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALF-GHVKGAFTGARESREGLLRSADGGML 286 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHH-hhhccccccchhhhhhhhccCCCceE
Confidence 3489999999999999999997653 2222233221110 1111 23444556666678899999999999
Q ss_pred EEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCC
Q 040742 358 CIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANP 404 (581)
Q Consensus 358 ~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np 404 (581)
|+||+..+..+.| -|+.++|+.++.-. |.......+|.+||.+-.
T Consensus 287 fldeigelgadeqamllkaieekrf~pf--gsdr~v~sdfqliagtvr 332 (531)
T COG4650 287 FLDEIGELGADEQAMLLKAIEEKRFYPF--GSDRQVSSDFQLIAGTVR 332 (531)
T ss_pred ehHhhhhcCccHHHHHHHHHHhhccCCC--CCccccccchHHhhhhHH
Confidence 9999999998888 67899999887654 666667778888887654
No 208
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.36 E-value=4.6e-07 Score=97.27 Aligned_cols=136 Identities=20% Similarity=0.337 Sum_probs=70.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC------CcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP------RGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDK 364 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~ 364 (581)
+++|+||||+|||+|++++++.+. +.+|++..... ..+..+..... ...+ .. .......+++|||++.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~-~~~~~~~~~~~-~~~f--~~--~~~~~~dvLlIDDi~~ 205 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-NDLVDSMKEGK-LNEF--RE--KYRKKVDVLLIDDVQF 205 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHHHHhccc-HHHH--HH--HHHhcCCEEEEechhh
Confidence 699999999999999999998652 22344432210 00100000000 0000 00 0011356999999998
Q ss_pred CCH--HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEe-EEcCCCCC
Q 040742 365 MSA--EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLV-FILLDKPD 440 (581)
Q Consensus 365 ~~~--~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli-~~~~d~~~ 440 (581)
+.. ..+ .|+..+..-.- .....|+++..++. .+. .+.+.+.|||..- .+-.+.|+
T Consensus 206 l~~~~~~q~elf~~~n~l~~-----------~~k~iIitsd~~p~-~l~---------~l~~rL~SR~~~gl~v~i~~pd 264 (440)
T PRK14088 206 LIGKTGVQTELFHTFNELHD-----------SGKQIVICSDREPQ-KLS---------EFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_pred hcCcHHHHHHHHHHHHHHHH-----------cCCeEEEECCCCHH-HHH---------HHHHHHhhHHhcCceEeeCCCC
Confidence 752 234 55555532110 01123444333331 111 2678999999621 23346788
Q ss_pred HHHHHHHHHHHHh
Q 040742 441 ELLDKRVSEHIMS 453 (581)
Q Consensus 441 ~~~d~~i~~~il~ 453 (581)
.+....|.+....
T Consensus 265 ~e~r~~IL~~~~~ 277 (440)
T PRK14088 265 EETRKKIARKMLE 277 (440)
T ss_pred HHHHHHHHHHHHH
Confidence 8777777555443
No 209
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.1e-07 Score=90.34 Aligned_cols=132 Identities=28% Similarity=0.440 Sum_probs=77.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeeec---CceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLA---DSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a---~~gil~iDEi~~~~ 366 (581)
.|+|+|+||||||.||+++|+.....+. +.|.. |.....-+. ...+ .-.+..| ...|+||||||.+.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGse-----LiQkylGdG--pklv--RqlF~vA~e~apSIvFiDEIdAiG 291 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE-----LIQKYLGDG--PKLV--RELFRVAEEHAPSIVFIDEIDAIG 291 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHH-----HHHHHhccc--hHHH--HHHHHHHHhcCCceEEeehhhhhc
Confidence 6999999999999999999987643322 22221 111111000 0000 0000011 25799999998764
Q ss_pred HH-----------HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhh--ccccEe
Q 040742 367 AE-----------HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALL--SRFDLV 432 (581)
Q Consensus 367 ~~-----------~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all--~RFdli 432 (581)
.. .| .+++.+.+-. |... ..++-||.|+|..+. |++||+ -|.|--
T Consensus 292 tKRyds~SggerEiQrtmLELLNQld------GFds--rgDvKvimATnrie~-------------LDPaLiRPGrIDrK 350 (440)
T KOG0726|consen 292 TKRYDSNSGGEREIQRTMLELLNQLD------GFDS--RGDVKVIMATNRIET-------------LDPALIRPGRIDRK 350 (440)
T ss_pred cccccCCCccHHHHHHHHHHHHHhcc------Cccc--cCCeEEEEecccccc-------------cCHhhcCCCccccc
Confidence 32 46 7888887622 2221 235778999998642 888888 477663
Q ss_pred EEcCCCCCHHHHHHHHHHHHhhccC
Q 040742 433 FILLDKPDELLDKRVSEHIMSLHSG 457 (581)
Q Consensus 433 ~~~~d~~~~~~d~~i~~~il~~~~~ 457 (581)
+ .++.||+...+. |+..|..
T Consensus 351 I-ef~~pDe~Tkkk----If~IHTs 370 (440)
T KOG0726|consen 351 I-EFPLPDEKTKKK----IFQIHTS 370 (440)
T ss_pred c-ccCCCchhhhce----eEEEeec
Confidence 3 456777655444 4666654
No 210
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.4e-07 Score=98.39 Aligned_cols=129 Identities=22% Similarity=0.316 Sum_probs=73.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE--EEecCCCcc--CCceeEEEecCc---cccceeccceeeecCceEEEEcCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI--YVCGNATTK--AGLTVAVVKDSV---TNDYAFEAGAMVLADSGLCCIDEFD 363 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~--~~~~~~~~~--~~l~~~~~~~~~---~~~~~~~~g~l~~a~~gil~iDEi~ 363 (581)
.+||+||||||||.+||.+-+.+...- .++|...-. .|-....+++-. ..+|.- .|. -+.-+|+++||||
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~-~g~--~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRR-LGA--NSGLHIIIFDEID 334 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHh-hCc--cCCceEEEehhhH
Confidence 499999999999999999999985321 244443210 111111111100 011111 111 0123689999998
Q ss_pred CCCHH-------------HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhh--c
Q 040742 364 KMSAE-------------HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALL--S 427 (581)
Q Consensus 364 ~~~~~-------------~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all--~ 427 (581)
.+-.. .. .|+.-|+ |. ..++ ++.||+-+|...- +++||| -
T Consensus 335 AICKqRGS~~g~TGVhD~VVNQLLsKmD---------GV-eqLN-NILVIGMTNR~Dl-------------IDEALLRPG 390 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHDTVVNQLLSKMD---------GV-EQLN-NILVIGMTNRKDL-------------IDEALLRPG 390 (744)
T ss_pred HHHHhcCCCCCCCCccHHHHHHHHHhcc---------cH-Hhhh-cEEEEeccCchhh-------------HHHHhcCCC
Confidence 75432 11 4555543 21 1222 4789999998521 788999 5
Q ss_pred cccEeEEcCCCCCHHHHHHH
Q 040742 428 RFDLVFILLDKPDELLDKRV 447 (581)
Q Consensus 428 RFdli~~~~d~~~~~~d~~i 447 (581)
||.+ -.-...||+.-..+|
T Consensus 391 RlEV-qmEIsLPDE~gRlQI 409 (744)
T KOG0741|consen 391 RLEV-QMEISLPDEKGRLQI 409 (744)
T ss_pred ceEE-EEEEeCCCccCceEE
Confidence 8855 444577887766655
No 211
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.34 E-value=8.6e-07 Score=105.88 Aligned_cols=147 Identities=20% Similarity=0.290 Sum_probs=108.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEE-Ee-cCCCccCCceeEEEecCccccceeccceeeec--CceEEEEcCCCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VC-GNATTKAGLTVAVVKDSVTNDYAFEAGAMVLA--DSGLCCIDEFDKM 365 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a--~~gil~iDEi~~~ 365 (581)
.++||.||.|+|||.+++++|+..+..+. +. ........+.+... ...+|...++.|.++.| +|.++++||++.+
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~-~~~~g~l~freg~LV~Alr~G~~~vlD~lnla 519 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYV-ADDNGDLVFREGVLVQALRNGDWIVLDELNLA 519 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhh-cCCCCCeeeehhHHHHHHHhCCEEEecccccc
Confidence 48999999999999999999999877554 32 22222233333221 12357778889998877 6889999999999
Q ss_pred CHHHH-HHHHHHHc-cEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHH
Q 040742 366 SAEHQ-ALLEAMEQ-QCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELL 443 (581)
Q Consensus 366 ~~~~~-~L~~~me~-~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~ 443 (581)
+.+.. +|..++++ +.+.++........+.++.+.||.||+ |.|. +...++.+|++||.. +.+.+.+.++.
T Consensus 520 ~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~-~~y~------grk~lsRa~~~rf~e-~~f~~~~e~e~ 591 (1856)
T KOG1808|consen 520 PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPP-GTYG------GRKILSRALRNRFIE-LHFDDIGEEEL 591 (1856)
T ss_pred chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCc-cccc------hhhhhhhcccccchh-hhhhhcCchhh
Confidence 98877 89999987 888888777778888899999999997 2222 111288999999944 55556665544
Q ss_pred HH
Q 040742 444 DK 445 (581)
Q Consensus 444 d~ 445 (581)
..
T Consensus 592 ~~ 593 (1856)
T KOG1808|consen 592 EE 593 (1856)
T ss_pred hh
Confidence 33
No 212
>PRK05642 DNA replication initiation factor; Validated
Probab=98.33 E-value=4.5e-06 Score=82.13 Aligned_cols=71 Identities=24% Similarity=0.400 Sum_probs=41.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC----CcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP----RGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~ 366 (581)
+++|+|++|+|||+|++++++.+. +.+|++...... . ...+ . . .+.+..+++|||++...
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~-----~------~~~~--~-~--~~~~~d~LiiDDi~~~~ 110 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD-----R------GPEL--L-D--NLEQYELVCLDDLDVIA 110 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh-----h------hHHH--H-H--hhhhCCEEEEechhhhc
Confidence 789999999999999999986532 233443322110 0 0000 0 0 01123589999999875
Q ss_pred H--HHH-HHHHHHH
Q 040742 367 A--EHQ-ALLEAME 377 (581)
Q Consensus 367 ~--~~~-~L~~~me 377 (581)
. ..+ .|+..++
T Consensus 111 ~~~~~~~~Lf~l~n 124 (234)
T PRK05642 111 GKADWEEALFHLFN 124 (234)
T ss_pred CChHHHHHHHHHHH
Confidence 2 334 5776664
No 213
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.32 E-value=1.7e-06 Score=89.45 Aligned_cols=141 Identities=18% Similarity=0.148 Sum_probs=80.3
Q ss_pred cccccHHHHHHHHHHHh-cCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEEEec-----------
Q 040742 255 SIYGHELVKAGITLALF-GGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIYVCG----------- 321 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~-~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~~~~----------- 321 (581)
.++|++.+...+..... .+.. .| +||+||||+|||++|.++|+.+........
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~--------------~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~ 67 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRL--------------PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKL 67 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCC--------------CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhH
Confidence 46677777776666665 3311 27 999999999999999999988752111000
Q ss_pred ----CCCccCCceeEEEecCc-cc-cce--eccceee--ecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeE
Q 040742 322 ----NATTKAGLTVAVVKDSV-TN-DYA--FEAGAMV--LADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVA 390 (581)
Q Consensus 322 ----~~~~~~~l~~~~~~~~~-~~-~~~--~~~g~l~--~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~ 390 (581)
.......+..+..+... .- ... ....... .....|++|||+|.|+.+.+ +|+..||+.
T Consensus 68 ~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep----------- 136 (325)
T COG0470 68 IPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP----------- 136 (325)
T ss_pred HhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-----------
Confidence 00000001111000000 00 000 0000000 12356999999999999888 999988752
Q ss_pred eeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcC
Q 040742 391 SLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILL 436 (581)
Q Consensus 391 ~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~ 436 (581)
+.++.+|.++|... .+-+++.||+-. +-+.
T Consensus 137 --~~~~~~il~~n~~~-------------~il~tI~SRc~~-i~f~ 166 (325)
T COG0470 137 --PKNTRFILITNDPS-------------KILPTIRSRCQR-IRFK 166 (325)
T ss_pred --CCCeEEEEEcCChh-------------hccchhhhccee-eecC
Confidence 34566777777432 177799999944 4443
No 214
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=6.2e-06 Score=84.91 Aligned_cols=140 Identities=22% Similarity=0.237 Sum_probs=83.5
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeE
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVA 332 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~ 332 (581)
.+|+||+.+++.+..++..|... | .||+||+|+||+++|+.+++.+-.... .+ +-.++..-
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~--------------ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~-~~---~h~D~~~~ 65 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFS--------------HAHIIVGEDGIGKSLLAKEIALKILGKSQ-QR---EYVDIIEF 65 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCC--------------ceEEeECCCCCCHHHHHHHHHHHHcCCCC-CC---CCCCeEEe
Confidence 46899999999999888776421 4 489999999999999999987522100 00 00111000
Q ss_pred EEecCc--c-ccc--eec--cceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCe-EEEEeeC
Q 040742 333 VVKDSV--T-NDY--AFE--AGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSART-SVLAAAN 403 (581)
Q Consensus 333 ~~~~~~--~-~~~--~~~--~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~-~viaa~N 403 (581)
...+.. + .+. ..+ .-.-..+...|++||+.++|+...+ +|+..||+- |..+ .|+.|.|
T Consensus 66 ~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep-------------p~~t~~il~~~~ 132 (313)
T PRK05564 66 KPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP-------------PKGVFIILLCEN 132 (313)
T ss_pred ccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeCC
Confidence 000000 0 000 000 0011234567999999999998877 999998851 2223 3445555
Q ss_pred CCCCCCCCccChhhhcCCChhhhccccEeEEcCCCC
Q 040742 404 PVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKP 439 (581)
Q Consensus 404 p~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~ 439 (581)
+. .+.+++.||+ .++.+...+
T Consensus 133 ~~--------------~ll~TI~SRc-~~~~~~~~~ 153 (313)
T PRK05564 133 LE--------------QILDTIKSRC-QIYKLNRLS 153 (313)
T ss_pred hH--------------hCcHHHHhhc-eeeeCCCcC
Confidence 53 1888999999 445444433
No 215
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.32 E-value=4e-06 Score=79.74 Aligned_cols=167 Identities=20% Similarity=0.196 Sum_probs=97.5
Q ss_pred cccccHHHHHHHHH---HHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC-cEEEecCCCccCCce
Q 040742 255 SIYGHELVKAGITL---ALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR-GIYVCGNATTKAGLT 330 (581)
Q Consensus 255 ~I~G~e~vk~~lll---~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~-~~~~~~~~~~~~~l~ 330 (581)
.++|.+..|.++.. .++.|..- -||||+|..|||||.|.+++...... ... |
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pA-------------NnVLLwGaRGtGKSSLVKA~~~e~~~~glr----------L- 116 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPA-------------NNVLLWGARGTGKSSLVKALLNEYADEGLR----------L- 116 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcc-------------cceEEecCCCCChHHHHHHHHHHHHhcCCe----------E-
Confidence 47899999998874 45566422 18999999999999999999876521 110 1
Q ss_pred eEEEecCccccceeccceeeecCceEEEEcCCCCCCHH-HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC---
Q 040742 331 VAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE-HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV--- 405 (581)
Q Consensus 331 ~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~-~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~--- 405 (581)
..+.++....-..+..-.-.....-|+|+|++.==..+ .. +|-.+|| |.....|.++.|-||+|..
T Consensus 117 VEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le---------G~ve~rP~NVl~YATSNRRHLl 187 (287)
T COG2607 117 VEVDKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE---------GGVEGRPANVLFYATSNRRHLL 187 (287)
T ss_pred EEEcHHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc---------CCcccCCCeEEEEEecCCcccc
Confidence 11111110000000000001223568999998544433 33 6777776 4445568899999999975
Q ss_pred CCCCCCccChhhhcCCC------hhhhccccEeEEcCCCCCHHHHHHHHHHHHhhc
Q 040742 406 GGHYNRAKTVNENLKMS------AALLSRFDLVFILLDKPDELLDKRVSEHIMSLH 455 (581)
Q Consensus 406 ~g~~~~~~~~~~~~~l~------~all~RFdli~~~~d~~~~~~d~~i~~~il~~~ 455 (581)
...+.++....+.+.-+ =+|-|||.+- +-+..++.+.-..|..|....+
T Consensus 188 ~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLw-L~F~~~~Q~~YL~~V~~~a~~~ 242 (287)
T COG2607 188 PEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLW-LSFYPCDQDEYLKIVDHYAKHF 242 (287)
T ss_pred cHhhhhCCCcccccChhHHHHHhhchhhhccee-ecccCCCHHHHHHHHHHHHHHc
Confidence 11222221111111111 2566999884 4456778888888888877643
No 216
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=4.3e-06 Score=85.64 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=40.4
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+|+||+.+++.+..++..|+-. ...||+||+|+||+++|.++++.+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~-------------ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIA-------------PAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCC-------------ceEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999888877421 279999999999999999999876
No 217
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1e-06 Score=86.59 Aligned_cols=127 Identities=24% Similarity=0.308 Sum_probs=73.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEE-E-ecCCC-ccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIY-V-CGNAT-TKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS 366 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~-~-~~~~~-~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~ 366 (581)
..++|+||||||||.++++++..++..+. + ++... ...|-.+...++. |. .+... ...++|+||+|...
T Consensus 167 kg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRem----f~-yA~~~---~pciifmdeiDAig 238 (388)
T KOG0651|consen 167 KGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDM----FR-YAREV---IPCIIFMDEIDAIG 238 (388)
T ss_pred ceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHH----HH-HHhhh---CceEEeehhhhhhc
Confidence 47999999999999999999999876554 2 22111 0011111111111 00 01111 24799999997643
Q ss_pred H-----------HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhh--ccccEe
Q 040742 367 A-----------EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALL--SRFDLV 432 (581)
Q Consensus 367 ~-----------~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all--~RFdli 432 (581)
. ..| .|++.+++- .......++-+|.|+|.+. + |++||+ .|.|-.
T Consensus 239 GRr~se~Ts~dreiqrTLMeLlnqm--------dgfd~l~rVk~ImatNrpd-t------------LdpaLlRpGRldrk 297 (388)
T KOG0651|consen 239 GRRFSEGTSSDREIQRTLMELLNQM--------DGFDTLHRVKTIMATNRPD-T------------LDPALLRPGRLDRK 297 (388)
T ss_pred cEEeccccchhHHHHHHHHHHHHhh--------ccchhcccccEEEecCCcc-c------------cchhhcCCccccce
Confidence 1 245 677777631 1122345688999999853 1 777887 366554
Q ss_pred EEcCCCCCHHHHHH
Q 040742 433 FILLDKPDELLDKR 446 (581)
Q Consensus 433 ~~~~d~~~~~~d~~ 446 (581)
+.. +.|.+.....
T Consensus 298 ~~i-Plpne~~r~~ 310 (388)
T KOG0651|consen 298 VEI-PLPNEQARLG 310 (388)
T ss_pred ecc-CCcchhhcee
Confidence 554 4666655444
No 218
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1e-06 Score=94.64 Aligned_cols=136 Identities=24% Similarity=0.287 Sum_probs=85.2
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCC--ccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNAT--TKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS 366 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~--~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~ 366 (581)
..+|++||||||||.+++++++.....++ +++... ...|-+.+..+. .++ -+...+...++||||++.+.
T Consensus 219 rg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~------~f~-~a~k~~~psii~IdEld~l~ 291 (693)
T KOG0730|consen 219 RGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRK------AFA-EALKFQVPSIIFIDELDALC 291 (693)
T ss_pred CCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHH------HHH-HHhccCCCeeEeHHhHhhhC
Confidence 36999999999999999999998875444 343321 111111111111 011 01111126799999999877
Q ss_pred H--------H--HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc-cccEeEE
Q 040742 367 A--------E--HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS-RFDLVFI 434 (581)
Q Consensus 367 ~--------~--~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~-RFdli~~ 434 (581)
+ + .. .|+..|+.-. -...+.|++|+|.+.+ |++++.+ |||- -+
T Consensus 292 p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atnrp~s-------------ld~alRRgRfd~-ev 346 (693)
T KOG0730|consen 292 PKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATNRPDS-------------LDPALRRGRFDR-EV 346 (693)
T ss_pred CcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecCCccc-------------cChhhhcCCCcc-ee
Confidence 4 2 12 5666665311 1245778999998643 8899997 9986 34
Q ss_pred cCCCCCHHHHHHHHHHHHhhccC
Q 040742 435 LLDKPDELLDKRVSEHIMSLHSG 457 (581)
Q Consensus 435 ~~d~~~~~~d~~i~~~il~~~~~ 457 (581)
....|+......|.+.+.+.+..
T Consensus 347 ~IgiP~~~~RldIl~~l~k~~~~ 369 (693)
T KOG0730|consen 347 EIGIPGSDGRLDILRVLTKKMNL 369 (693)
T ss_pred eecCCCchhHHHHHHHHHHhcCC
Confidence 45788888888887777765443
No 219
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.27 E-value=1.5e-06 Score=93.42 Aligned_cols=99 Identities=18% Similarity=0.168 Sum_probs=67.7
Q ss_pred cceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC-CCCCCCccChhhhcCCCh
Q 040742 346 AGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV-GGHYNRAKTVNENLKMSA 423 (581)
Q Consensus 346 ~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~-~g~~~~~~~~~~~~~l~~ 423 (581)
.|.+..|++|++=+=|+-+.+.+.. .|+.+.+++.+... +.....+.+-.|||.+|.. +..|- +-.-.+
T Consensus 248 ~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~--~~~~~i~~D~vIiaHsNE~E~~~F~-------~nk~nE 318 (644)
T PRK15455 248 SGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGT--EGIGAIPFDGIILAHSNESEWQTFR-------NNKNNE 318 (644)
T ss_pred CchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCC--CCcceeccceeEEecCCHHHHHHHh-------cCccch
Confidence 4778888888877779999998765 88999888888553 3333557788999999976 22221 112558
Q ss_pred hhhccccEeEEcCCCCCHHHHHHHHHHHHhh
Q 040742 424 ALLSRFDLVFILLDKPDELLDKRVSEHIMSL 454 (581)
Q Consensus 424 all~RFdli~~~~d~~~~~~d~~i~~~il~~ 454 (581)
||+||+ .++-+|-...-..+.+|-+.+++.
T Consensus 319 A~~DRi-~~V~VPY~lr~~eE~kIYeKll~~ 348 (644)
T PRK15455 319 AFLDRI-YIVKVPYCLRVSEEIKIYEKLLRN 348 (644)
T ss_pred hhhceE-EEEeCCccCChhHHHHHHHHHhcC
Confidence 999998 555555544544555666666644
No 220
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=3.8e-06 Score=86.90 Aligned_cols=141 Identities=21% Similarity=0.246 Sum_probs=83.3
Q ss_pred cccc-cHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcE----EEecC------
Q 040742 255 SIYG-HELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGI----YVCGN------ 322 (581)
Q Consensus 255 ~I~G-~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~----~~~~~------ 322 (581)
.|+| |+.+++.+.-++..|+.. | .||+||+|+||+++|+.+++.+-..- ..+|.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~--------------ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLS--------------HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCC--------------ceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4667 999999888888766421 5 49999999999999999998863210 00000
Q ss_pred --CCccCCceeEEEecCccccce----------eccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCee
Q 040742 323 --ATTKAGLTVAVVKDSVTNDYA----------FEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLV 389 (581)
Q Consensus 323 --~~~~~~l~~~~~~~~~~~~~~----------~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~ 389 (581)
..+-.++.. ...+ +.... +...+ ..+...|++|||+++|+...+ +|+..||+-
T Consensus 72 ~~~~~hpD~~~-i~~~--~~~i~id~ir~l~~~~~~~~-~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP---------- 137 (329)
T PRK08058 72 IDSGNHPDVHL-VAPD--GQSIKKDQIRYLKEEFSKSG-VESNKKVYIIEHADKMTASAANSLLKFLEEP---------- 137 (329)
T ss_pred HhcCCCCCEEE-eccc--cccCCHHHHHHHHHHHhhCC-cccCceEEEeehHhhhCHHHHHHHHHHhcCC----------
Confidence 000011110 0000 00000 00011 234567999999999998877 999999861
Q ss_pred EeeCCCeEEE-EeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCH
Q 040742 390 ASLSARTSVL-AAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDE 441 (581)
Q Consensus 390 ~~~~~~~~vi-aa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~ 441 (581)
|..+.+| .|.|+.. +.+++.||+ .++.+...+.+
T Consensus 138 ---p~~~~~Il~t~~~~~--------------ll~TIrSRc-~~i~~~~~~~~ 172 (329)
T PRK08058 138 ---SGGTTAILLTENKHQ--------------ILPTILSRC-QVVEFRPLPPE 172 (329)
T ss_pred ---CCCceEEEEeCChHh--------------CcHHHHhhc-eeeeCCCCCHH
Confidence 2334344 4444421 889999999 54554444433
No 221
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.25 E-value=1.4e-06 Score=80.57 Aligned_cols=133 Identities=23% Similarity=0.263 Sum_probs=76.0
Q ss_pred ccHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcEEE---ecCC--------Cc
Q 040742 258 GHELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGIYV---CGNA--------TT 325 (581)
Q Consensus 258 G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~~~---~~~~--------~~ 325 (581)
||+.+++.+.-.+..+... | +||+||+|+||+++|+++++.+-..-.. .+.. ..
T Consensus 1 gq~~~~~~L~~~~~~~~l~--------------ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~ 66 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLP--------------HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGN 66 (162)
T ss_dssp S-HHHHHHHHHHHHCTC----------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-
T ss_pred CcHHHHHHHHHHHHcCCcc--------------eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhcc
Confidence 7888988888888776421 4 7999999999999999999876221100 0000 00
Q ss_pred cCCceeEEEecCccc--ccee------c---cceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeC
Q 040742 326 KAGLTVAVVKDSVTN--DYAF------E---AGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLS 393 (581)
Q Consensus 326 ~~~l~~~~~~~~~~~--~~~~------~---~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~ 393 (581)
..++.. .++... .... . .-.-..+...|++|||+++|..+.+ +|+..||+- +
T Consensus 67 ~~d~~~---~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep-------------p 130 (162)
T PF13177_consen 67 HPDFII---IKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP-------------P 130 (162)
T ss_dssp CTTEEE---EETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST-------------T
T ss_pred CcceEE---EecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC-------------C
Confidence 111110 111100 0000 0 0001113457999999999999988 999999962 3
Q ss_pred CCeEE-EEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEc
Q 040742 394 ARTSV-LAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFIL 435 (581)
Q Consensus 394 ~~~~v-iaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~ 435 (581)
.++.+ +.|.|+.. +.++++||+ ..+-+
T Consensus 131 ~~~~fiL~t~~~~~--------------il~TI~SRc-~~i~~ 158 (162)
T PF13177_consen 131 ENTYFILITNNPSK--------------ILPTIRSRC-QVIRF 158 (162)
T ss_dssp TTEEEEEEES-GGG--------------S-HHHHTTS-EEEEE
T ss_pred CCEEEEEEECChHH--------------ChHHHHhhc-eEEec
Confidence 34444 44445432 889999999 44443
No 222
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.8e-06 Score=84.39 Aligned_cols=83 Identities=19% Similarity=0.300 Sum_probs=59.4
Q ss_pred HHHhhCccccccHHHHHHHHHHHhcCcccccCCCC-CccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCc
Q 040742 248 IVQSICPSIYGHELVKAGITLALFGGVRKHSMYQN-KVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATT 325 (581)
Q Consensus 248 l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~-~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~ 325 (581)
+.+.+...|+||+.+|+++..+|.....+...+.. +- .=-.-|||++||+|+|||.+||.+|++++..+. +..+-.+
T Consensus 9 IV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~-EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfT 87 (444)
T COG1220 9 IVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRD-EVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFT 87 (444)
T ss_pred HHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhh-ccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeee
Confidence 45556677999999999999999865433211110 00 000138999999999999999999999987776 6666666
Q ss_pred cCCcee
Q 040742 326 KAGLTV 331 (581)
Q Consensus 326 ~~~l~~ 331 (581)
..|+.+
T Consensus 88 EVGYVG 93 (444)
T COG1220 88 EVGYVG 93 (444)
T ss_pred eccccc
Confidence 666655
No 223
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.11 E-value=5.4e-05 Score=76.05 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 523 RMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 523 ~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
.+++++.+.|.+.- .-.+|.+..+...+...|..+..+.|+.+++
T Consensus 215 ~~~~~~~~~i~~~s-------------~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v 259 (269)
T TIGR03015 215 VFSEGAFDAIHRFS-------------RGIPRLINILCDRLLLSAFLEEKREIGGEEV 259 (269)
T ss_pred CcCHHHHHHHHHHc-------------CCcccHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 57777777776521 1246778888888888888888888888876
No 224
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.06 E-value=1.7e-05 Score=75.25 Aligned_cols=124 Identities=17% Similarity=0.156 Sum_probs=66.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEecCC------------CccCCceeEEEecCc-cc--cc---eeccc-eeee
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNA------------TTKAGLTVAVVKDSV-TN--DY---AFEAG-AMVL 351 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~-~~--~~---~~~~g-~l~~ 351 (581)
.+||+||||+|||++++.+++.+...-...+.. ....++.. ...+.. .+ .. .-... .-..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHR-LEPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEE-eccccCcCCHHHHHHHHHHHccCccc
Confidence 599999999999999999998763210000000 00001100 000000 00 00 00000 0112
Q ss_pred cCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhcccc
Q 040742 352 ADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD 430 (581)
Q Consensus 352 a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFd 430 (581)
+...|++|||++++..+.+ .|+..||+. +..+.+|.++|... .+.+++.+|+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~~-------------~l~~~i~sr~~ 148 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEP-------------PPNTLFILITPSPE-------------KLLPTIRSRCQ 148 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChH-------------hChHHHHhhcE
Confidence 4567999999999998877 899988752 22344444444321 18899999994
Q ss_pred EeEEcCCCCCHHH
Q 040742 431 LVFILLDKPDELL 443 (581)
Q Consensus 431 li~~~~d~~~~~~ 443 (581)
++.+ ..++.+.
T Consensus 149 -~~~~-~~~~~~~ 159 (188)
T TIGR00678 149 -VLPF-PPLSEEA 159 (188)
T ss_pred -EeeC-CCCCHHH
Confidence 4444 4444443
No 225
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=3.5e-06 Score=81.03 Aligned_cols=134 Identities=26% Similarity=0.288 Sum_probs=72.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeee-cCceEEEEcCCCCCCH-
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVL-ADSGLCCIDEFDKMSA- 367 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~-a~~gil~iDEi~~~~~- 367 (581)
.+||+||||||||..||++|+-....+. +.|... ....+.+ +...+-+--.+.. ....|+|+||+|.+..
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvigsel-----vqkyvge--garmvrelf~martkkaciiffdeidaigga 285 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL-----VQKYVGE--GARMVRELFEMARTKKACIIFFDEIDAIGGA 285 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH-----HHHHhhh--hHHHHHHHHHHhcccceEEEEeeccccccCc
Confidence 6999999999999999999987654332 333221 1110000 0000000000111 1347999999987542
Q ss_pred ----------HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhh--ccccEeEE
Q 040742 368 ----------EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALL--SRFDLVFI 434 (581)
Q Consensus 368 ----------~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all--~RFdli~~ 434 (581)
+.| .+++.+.+-.-.-+ -.++-|+.|+|.+.- |++||+ .|.|--+-
T Consensus 286 rfddg~ggdnevqrtmleli~qldgfdp--------rgnikvlmatnrpdt-------------ldpallrpgrldrkve 344 (435)
T KOG0729|consen 286 RFDDGAGGDNEVQRTMLELINQLDGFDP--------RGNIKVLMATNRPDT-------------LDPALLRPGRLDRKVE 344 (435)
T ss_pred cccCCCCCcHHHHHHHHHHHHhccCCCC--------CCCeEEEeecCCCCC-------------cCHhhcCCccccccee
Confidence 246 78888876322211 224567888887631 777887 35554222
Q ss_pred cCCCCCHHHHHHHHHHHHhhccC
Q 040742 435 LLDKPDELLDKRVSEHIMSLHSG 457 (581)
Q Consensus 435 ~~d~~~~~~d~~i~~~il~~~~~ 457 (581)
+..||-+.. .||+..|..
T Consensus 345 -f~lpdlegr----t~i~kihak 362 (435)
T KOG0729|consen 345 -FGLPDLEGR----THIFKIHAK 362 (435)
T ss_pred -ccCCccccc----ceeEEEecc
Confidence 234443332 244665554
No 226
>PRK08181 transposase; Validated
Probab=98.04 E-value=1.1e-06 Score=87.78 Aligned_cols=116 Identities=23% Similarity=0.327 Sum_probs=63.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC---CcE-EEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP---RGI-YVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~---~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~ 366 (581)
|++|+||||||||+|+.+++..+- ..+ |++.. ++..........+.. ....-.+..-.+++|||++..+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~-----~L~~~l~~a~~~~~~--~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTT-----DLVQKLQVARRELQL--ESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHH-----HHHHHHHHHHhCCcH--HHHHHHHhcCCEEEEecccccc
Confidence 899999999999999999987542 222 22211 111100000000110 0000112345699999999876
Q ss_pred HH--HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccc
Q 040742 367 AE--HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRF 429 (581)
Q Consensus 367 ~~--~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RF 429 (581)
.+ .+ .|+++++... . +.++|.|+|-..+.|.. ......+..+++||.
T Consensus 181 ~~~~~~~~Lf~lin~R~------------~-~~s~IiTSN~~~~~w~~---~~~D~~~a~aildRL 230 (269)
T PRK08181 181 KDQAETSVLFELISARY------------E-RRSILITANQPFGEWNR---VFPDPAMTLAAVDRL 230 (269)
T ss_pred CCHHHHHHHHHHHHHHH------------h-CCCEEEEcCCCHHHHHH---hcCCccchhhHHHhh
Confidence 43 33 6888887432 1 12477888876444431 111223667788886
No 227
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.2e-05 Score=91.50 Aligned_cols=170 Identities=26% Similarity=0.319 Sum_probs=91.6
Q ss_pred CccccccHHHHHHH----HHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccC
Q 040742 253 CPSIYGHELVKAGI----TLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKA 327 (581)
Q Consensus 253 ~p~I~G~e~vk~~l----ll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~ 327 (581)
.++|-|.+.++..+ ++-|.-+..... .+-.+-|| +||.||||||||.+|+++|..+.+.-. ++-.....+
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~--~~itpPrg---vL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDN--FNITPPRG---VLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhh--cccCCCcc---eeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 57777777665544 444443322110 01122344 999999999999999999998865322 211111222
Q ss_pred CceeEEEecCccc-cceeccceeeecCceEEEEcCCCCCCHH-----------HH-HHHHHHHccEEEEeeCCeeEeeCC
Q 040742 328 GLTVAVVKDSVTN-DYAFEAGAMVLADSGLCCIDEFDKMSAE-----------HQ-ALLEAMEQQCVSVAKAGLVASLSA 394 (581)
Q Consensus 328 ~l~~~~~~~~~~~-~~~~~~g~l~~a~~gil~iDEi~~~~~~-----------~~-~L~~~me~~~i~i~k~g~~~~~~~ 394 (581)
+....++.+.... ...++. ...-...|+|+|||+-+.+- .. .|+..|+ |... -.
T Consensus 339 D~lskwvgEaERqlrllFee--A~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmd---------Glds--Rg 405 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEE--AQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMD---------GLDS--RG 405 (1080)
T ss_pred hhhccccCcHHHHHHHHHHH--HhccCceEEeccccccccccccchHHHhhhhHHHHHHHhcc---------CCCC--CC
Confidence 2222222211100 000110 00112579999999944321 12 3444443 2222 23
Q ss_pred CeEEEEeeCCCCCCCCCccChhhhcCCChhh--hccccEeEEcCCCCCHHHHHHHHHHHHhhccCC
Q 040742 395 RTSVLAAANPVGGHYNRAKTVNENLKMSAAL--LSRFDLVFILLDKPDELLDKRVSEHIMSLHSGY 458 (581)
Q Consensus 395 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~al--l~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~ 458 (581)
++.||+|+|.+.. +++|| --|||-.|.+ ..|+.+...+ |+..|...
T Consensus 406 qVvvigATnRpda-------------~dpaLRRPgrfdref~f-~lp~~~ar~~----Il~Ihtrk 453 (1080)
T KOG0732|consen 406 QVVVIGATNRPDA-------------IDPALRRPGRFDREFYF-PLPDVDARAK----ILDIHTRK 453 (1080)
T ss_pred ceEEEcccCCccc-------------cchhhcCCcccceeEee-eCCchHHHHH----HHHHhccC
Confidence 5789999998632 88899 4799987774 5666555444 46666543
No 228
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=97.97 E-value=0.00012 Score=80.00 Aligned_cols=166 Identities=17% Similarity=0.206 Sum_probs=99.3
Q ss_pred chHHHHHHHhhCcccccc-HHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEe
Q 040742 242 SDIFRQIVQSICPSIYGH-ELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVC 320 (581)
Q Consensus 242 ~~~~~~l~~s~~p~I~G~-e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~ 320 (581)
+++.+.|+.|+.-+--+. +..|..++.-|+--. ..+.|++=.||.|||||++-+ +.+|.+..++
T Consensus 180 dEWid~LlrSiG~eP~~~~~r~K~~~L~RliPlV------------E~N~Nl~ELgPrgTGKS~~y~---eiSp~~~liS 244 (675)
T TIGR02653 180 DEWIDVLLRSVGMEPTNLERRTKWHLLTRLIPLV------------ENNYNLCELGPRGTGKSHVYK---ECSPNSILMS 244 (675)
T ss_pred HHHHHHHHHhcCCCccccCHHHHHHHHHhhhhhc------------ccccceEEECCCCCCcceeee---ccCCceEEEE
Confidence 456788899864443333 355666666666443 233599999999999999987 4557777788
Q ss_pred cCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC---HHH-HHHHHHHHccEEEEeeCCeeEeeCCCe
Q 040742 321 GNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS---AEH-QALLEAMEQQCVSVAKAGLVASLSART 396 (581)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~---~~~-~~L~~~me~~~i~i~k~g~~~~~~~~~ 396 (581)
|...+.+.|.... .++ ..|.+-+ -.++++||+..+. ++. +.|-..|++|.++.. +......+.+
T Consensus 245 GG~~T~A~LFyn~----~~~----~~GlVg~--~D~VaFDEva~i~f~d~d~v~imK~YM~sG~FsRG--~~~~~a~as~ 312 (675)
T TIGR02653 245 GGQTTVANLFYNM----STR----QIGLVGM--WDVVAFDEVAGIEFKDKDGVQIMKDYMASGSFARG--KESIEGKASI 312 (675)
T ss_pred CCccchhHeeEEc----CCC----ceeEEee--ccEEEEeeccccccCCHHHHHHHHHHhhcCccccc--ccccccceeE
Confidence 8777766654332 223 2344443 3589999998865 232 366788999999875 3333344555
Q ss_pred EEEEeeCCC-CCC---CCCccChhhhcCCChhhhccccEeEE
Q 040742 397 SVLAAANPV-GGH---YNRAKTVNENLKMSAALLSRFDLVFI 434 (581)
Q Consensus 397 ~viaa~Np~-~g~---~~~~~~~~~~~~l~~all~RFdli~~ 434 (581)
.+++-.|.. .-. -+-..++.+...-+.||+|||...+-
T Consensus 313 vfvGNi~~~v~~~~k~~~lf~~lP~~~~~DsAflDRiH~yiP 354 (675)
T TIGR02653 313 VFVGNINQSVETLVKTSHLFAPFPEAMRIDTAFFDRFHYYIP 354 (675)
T ss_pred EEEcccCCchHHHhhcccccccCChhhcccchHHHHhhccCc
Confidence 555555522 100 00001122222235688899865333
No 229
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=97.96 E-value=5.3e-06 Score=72.67 Aligned_cols=53 Identities=32% Similarity=0.496 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHHHhcccc---------------CCCCeEEEeccCCCccccccCCCCcccCCcEEEEEE
Q 040742 1 KPRMTLSCMTAAVHKNKL---------------EDGMKINIRPYNYPESMIALKNLKAAYIDKLVSVRG 54 (581)
Q Consensus 1 ~P~~~l~~~~~a~~~~~~---------------~~~~~i~vr~~n~p~~~~~~~~l~s~~igklV~i~G 54 (581)
+|.+++++|+.|++++.. .....++|+++|.|.. .++|+|+|.+|||||+|+|
T Consensus 54 ~P~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~iR~L~s~~igkLV~v~G 121 (121)
T PF14551_consen 54 NPYRYLPLFEEALKEVVKELFPSEQQSSFPPELKRRKEIQVRFYNLPKS-TSIRELRSSHIGKLVSVSG 121 (121)
T ss_dssp CCCCCHHHHHHHHHHCHHTT----------GCCTTTS--EEEEES-S-E-E-GGG-SGGGTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhccceeEEEEEcCCCCC-cCcCCCChHHCCCEEEEeC
Confidence 699999999999997532 2467899999999875 8999999999999999999
No 230
>PRK04132 replication factor C small subunit; Provisional
Probab=97.96 E-value=4.4e-05 Score=86.95 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=75.5
Q ss_pred eeeEEeC--CCCChHHHHHHHHHHHCCC-----cEE-EecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcC
Q 040742 290 IHVIVVG--DPGLGKSQLLQAAAAVSPR-----GIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDE 361 (581)
Q Consensus 290 ~~iLL~G--~pGtGKT~la~~la~~~~~-----~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDE 361 (581)
+|-+.-| |++.|||++|+++|+.+.. .+. +++......+ .+++.. ..+. ....+.-+...|++|||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid----~IR~iI-k~~a-~~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGIN----VIREKV-KEFA-RTKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHH----HHHHHH-HHHH-hcCCcCCCCCEEEEEEC
Confidence 4556668 9999999999999988732 222 3333211111 011100 0000 00011101236999999
Q ss_pred CCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCC
Q 040742 362 FDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPD 440 (581)
Q Consensus 362 i~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~ 440 (581)
+|+|+.+.| +|+..||+ .+..+.+|.++|+.. .+.+++.||+ .++-+.. ++
T Consensus 639 aD~Lt~~AQnALLk~lEe-------------p~~~~~FILi~N~~~-------------kIi~tIrSRC-~~i~F~~-ls 690 (846)
T PRK04132 639 ADALTQDAQQALRRTMEM-------------FSSNVRFILSCNYSS-------------KIIEPIQSRC-AIFRFRP-LR 690 (846)
T ss_pred cccCCHHHHHHHHHHhhC-------------CCCCeEEEEEeCChh-------------hCchHHhhhc-eEEeCCC-CC
Confidence 999999888 99999985 123466778888753 1789999999 5455444 44
Q ss_pred HHHHHHHHHHHHh
Q 040742 441 ELLDKRVSEHIMS 453 (581)
Q Consensus 441 ~~~d~~i~~~il~ 453 (581)
.+........+..
T Consensus 691 ~~~i~~~L~~I~~ 703 (846)
T PRK04132 691 DEDIAKRLRYIAE 703 (846)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333344443
No 231
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.94 E-value=5.4e-05 Score=87.33 Aligned_cols=146 Identities=18% Similarity=0.144 Sum_probs=84.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHH--CCCcEEEec--CCCccCCc---eeEEEecCccccceeccceeeecCceEEEEcCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV--SPRGIYVCG--NATTKAGL---TVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFD 363 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~--~~~~~~~~~--~~~~~~~l---~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~ 363 (581)
.++++||||+|||.|+--..+. .-.-++++- ..++..-+ --...+-+.+|...+-|...+ ..+|+|.|||+
T Consensus 1496 ~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~v--K~lVLFcDeIn 1573 (3164)
T COG5245 1496 SYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVV--KDLVLFCDEIN 1573 (3164)
T ss_pred eEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcch--hheEEEeeccC
Confidence 5999999999999976433322 112222221 11111111 001111122344444444433 35899999998
Q ss_pred CCCHH-------HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC--CCCCCCccChhhhcCCChhhhccccEeE
Q 040742 364 KMSAE-------HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV--GGHYNRAKTVNENLKMSAALLSRFDLVF 433 (581)
Q Consensus 364 ~~~~~-------~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~--~g~~~~~~~~~~~~~l~~all~RFdli~ 433 (581)
++.. .. -|...||.|.++-+-+..+.++ ++..+.+|+||. .|+.+ ++..+++|= ++
T Consensus 1574 -Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-~~i~l~Gacnp~td~gRv~----------~~eRf~r~~--v~ 1639 (3164)
T COG5245 1574 -LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-CGIILYGACNPGTDEGRVK----------YYERFIRKP--VF 1639 (3164)
T ss_pred -CccccccCCCceEEeeHHHHHhcccccchhhhHhhh-cceEEEccCCCCCCcccCc----------cHHHHhcCc--eE
Confidence 4422 22 3457888877665543333333 468899999998 56655 888999885 34
Q ss_pred EcCCCCCHHHHHHHHHHHH
Q 040742 434 ILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 434 ~~~d~~~~~~d~~i~~~il 452 (581)
++.++|+......|-..++
T Consensus 1640 vf~~ype~~SL~~Iyea~l 1658 (3164)
T COG5245 1640 VFCCYPELASLRNIYEAVL 1658 (3164)
T ss_pred EEecCcchhhHHHHHHHHH
Confidence 5558898777776655443
No 232
>PRK12377 putative replication protein; Provisional
Probab=97.92 E-value=2.6e-06 Score=84.03 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=61.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---cE-EEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCC-
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---GI-YVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKM- 365 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~- 365 (581)
+++|+|+||||||+||.++++.+.. .+ +++.. ++.... +...........-.-.+....+|+|||++..
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~-----~l~~~l-~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP-----DVMSRL-HESYDNGQSGEKFLQELCKVDLLVLDEIGIQR 176 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH-----HHHHHH-HHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence 7999999999999999999987632 22 22211 111100 0000000000000011235679999999654
Q ss_pred -CHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccc
Q 040742 366 -SAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRF 429 (581)
Q Consensus 366 -~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RF 429 (581)
++..+ .|+++++... ..+..+|.|+|.....|. + .+.+.++||.
T Consensus 177 ~s~~~~~~l~~ii~~R~------------~~~~ptiitSNl~~~~l~------~--~~~~ri~dRl 222 (248)
T PRK12377 177 ETKNEQVVLNQIIDRRT------------ASMRSVGMLTNLNHEAMS------T--LLGERVMDRM 222 (248)
T ss_pred CCHHHHHHHHHHHHHHH------------hcCCCEEEEcCCCHHHHH------H--HhhHHHHHHH
Confidence 44445 7888887643 222446788897532221 1 1556677776
No 233
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.91 E-value=1.2e-05 Score=68.82 Aligned_cols=98 Identities=19% Similarity=0.302 Sum_probs=55.3
Q ss_pred eEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH---
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE--- 368 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~--- 368 (581)
|.|+|+||+|||++++.+++.+........ .... ..+.. ...|. .| .....++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~----~~~v---y~~~~-~~~~w--~g---Y~~q~vvi~DD~~~~~~~~~~ 67 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPT----KDSV---YTRNP-GDKFW--DG---YQGQPVVIIDDFGQDNDGYNY 67 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCC----CCcE---EeCCC-ccchh--hc---cCCCcEEEEeecCccccccch
Confidence 579999999999999998877643221000 0000 00111 01110 01 113568999999988754
Q ss_pred -H-HHHHHHHHccEEEEeeCCee---EeeCCCeEEEEeeC
Q 040742 369 -H-QALLEAMEQQCVSVAKAGLV---ASLSARTSVLAAAN 403 (581)
Q Consensus 369 -~-~~L~~~me~~~i~i~k~g~~---~~~~~~~~viaa~N 403 (581)
. ..|+.++....+....++.. ...++ -.|++|+|
T Consensus 68 ~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s-~~vi~tsN 106 (107)
T PF00910_consen 68 SDESELIRLISSNPFQPNMADLEDKGTPFNS-KLVIITSN 106 (107)
T ss_pred HHHHHHHHHHhcCCcccccccHhhCCCccCC-CEEEEcCC
Confidence 2 26777777776666655433 22222 45677777
No 234
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.89 E-value=2e-05 Score=80.24 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=69.2
Q ss_pred cceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCC-CCCCCccChhhhcCCCh
Q 040742 346 AGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVG-GHYNRAKTVNENLKMSA 423 (581)
Q Consensus 346 ~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~-g~~~~~~~~~~~~~l~~ 423 (581)
.|.+..|++|++=+=|+-+.+.+.. .|+.+.++|.+... +.....+.+..|||.+|+.+ ..|. +..-.+
T Consensus 226 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~E~~~f~-------~~~~~e 296 (358)
T PF08298_consen 226 SGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEEEYNKFK-------NNKNNE 296 (358)
T ss_pred ccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHHHHHHHh-------ccccch
Confidence 4777888889888889999998776 89999999998875 23334577789999999862 2221 111337
Q ss_pred hhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 424 ALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 424 all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
||.||+ .++-+|-..+-..+.+|-+.++.
T Consensus 297 Af~DRi-~~I~VPY~L~~s~E~kIY~k~~~ 325 (358)
T PF08298_consen 297 AFKDRI-EVIKVPYCLRVSEEVKIYEKLIG 325 (358)
T ss_pred hhhhhe-EEEeccccCCHHHHHHHHHHHhh
Confidence 999999 44444555666666777666664
No 235
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=8.6e-05 Score=75.98 Aligned_cols=135 Identities=22% Similarity=0.207 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHhcCcccccCCCCCccccCcee-eEEeCCCCChHHHHHHHHHHHCCCcE-EEecC--------CCccCC
Q 040742 259 HELVKAGITLALFGGVRKHSMYQNKVPVRGDIH-VIVVGDPGLGKSQLLQAAAAVSPRGI-YVCGN--------ATTKAG 328 (581)
Q Consensus 259 ~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~-iLL~G~pGtGKT~la~~la~~~~~~~-~~~~~--------~~~~~~ 328 (581)
++.+.+.+..++..|.- .| +||.||+|+||+++|.++++.+-..- ...+. ..+-.+
T Consensus 9 ~~~~~~~l~~~~~~~rl--------------~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD 74 (319)
T PRK08769 9 QQRAYDQTVAALDAGRL--------------GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD 74 (319)
T ss_pred HHHHHHHHHHHHHcCCc--------------ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC
Confidence 56677777777766631 15 89999999999999999997762110 00000 000011
Q ss_pred ceeEEEecCc-cc-----cceec------c--ce-eeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEee
Q 040742 329 LTVAVVKDSV-TN-----DYAFE------A--GA-MVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASL 392 (581)
Q Consensus 329 l~~~~~~~~~-~~-----~~~~~------~--g~-l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~ 392 (581)
+.. +...+. .| ...++ . .. -......|++||+.++|+.... +|+..||+ .
T Consensus 75 ~~~-i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------------P 140 (319)
T PRK08769 75 LQL-VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-------------P 140 (319)
T ss_pred EEE-EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-------------C
Confidence 110 000010 00 00000 0 00 0112346999999999998877 99999986 1
Q ss_pred CCCeEE-EEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcC
Q 040742 393 SARTSV-LAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILL 436 (581)
Q Consensus 393 ~~~~~v-iaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~ 436 (581)
|.++.+ +.|.++.. +.+.++||+-. +.+.
T Consensus 141 p~~~~fiL~~~~~~~--------------lLpTIrSRCq~-i~~~ 170 (319)
T PRK08769 141 SPGRYLWLISAQPAR--------------LPATIRSRCQR-LEFK 170 (319)
T ss_pred CCCCeEEEEECChhh--------------CchHHHhhheE-eeCC
Confidence 334444 44444432 88999999943 4443
No 236
>PRK06526 transposase; Provisional
Probab=97.87 E-value=1.9e-06 Score=85.54 Aligned_cols=100 Identities=18% Similarity=0.282 Sum_probs=54.2
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC---CcEE-EecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP---RGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKM 365 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~---~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~ 365 (581)
-|++|+||||||||+|+.+++..+. ..+. ++. ..+..........+.. ......+....+++|||++..
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~-----~~l~~~l~~~~~~~~~--~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA-----AQWVARLAAAHHAGRL--QAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH-----HHHHHHHHHHHhcCcH--HHHHHHhccCCEEEEcccccC
Confidence 4899999999999999999987652 2222 111 1110000000000110 000011233479999999987
Q ss_pred C--HHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCC
Q 040742 366 S--AEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHY 409 (581)
Q Consensus 366 ~--~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~ 409 (581)
+ +..+ .|+++++... . +.++|.|+|.+.+.|
T Consensus 172 ~~~~~~~~~L~~li~~r~------------~-~~s~IitSn~~~~~w 205 (254)
T PRK06526 172 PFEPEAANLFFQLVSSRY------------E-RASLIVTSNKPFGRW 205 (254)
T ss_pred CCCHHHHHHHHHHHHHHH------------h-cCCEEEEcCCCHHHH
Confidence 6 3344 6778776421 0 124777888764444
No 237
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.85 E-value=9.3e-05 Score=77.37 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=21.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+++|+|++|.|||+|+.++...+
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~ 137 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEA 137 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998776
No 238
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=3.4e-05 Score=79.52 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=67.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE----EEecCC--------CccCCceeEEEecCccccce------ecc---cee
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI----YVCGNA--------TTKAGLTVAVVKDSVTNDYA------FEA---GAM 349 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~----~~~~~~--------~~~~~l~~~~~~~~~~~~~~------~~~---g~l 349 (581)
.+||.||+|+||+++|+.+|+.+-..- ..+|.- .+-.++.. +..+..+.... +.. -.-
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~-i~~~~~~~~i~id~iR~l~~~~~~~~ 102 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFV-LEPEEADKTIKVDQVRELVSFVVQTA 102 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE-EeccCCCCCCCHHHHHHHHHHHhhcc
Confidence 488999999999999999998873210 001100 00011110 00000000000 000 001
Q ss_pred eecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeE-EEEeeCCCCCCCCCccChhhhcCCChhhhc
Q 040742 350 VLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTS-VLAAANPVGGHYNRAKTVNENLKMSAALLS 427 (581)
Q Consensus 350 ~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~-viaa~Np~~g~~~~~~~~~~~~~l~~all~ 427 (581)
..+...|++|||+++|+.... +|+..||+- |..+. ++.|.|+.. +.+.++|
T Consensus 103 ~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL~t~~~~~--------------ll~TI~S 155 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLLISHQPSR--------------LLPTIKS 155 (328)
T ss_pred ccCCCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEEEECChhh--------------CcHHHHh
Confidence 123457999999999998877 999999862 22333 455555532 8899999
Q ss_pred cccEeEEcCCCCCH
Q 040742 428 RFDLVFILLDKPDE 441 (581)
Q Consensus 428 RFdli~~~~d~~~~ 441 (581)
|+-. +.+...+.+
T Consensus 156 Rc~~-~~~~~~~~~ 168 (328)
T PRK05707 156 RCQQ-QACPLPSNE 168 (328)
T ss_pred hcee-eeCCCcCHH
Confidence 9944 544443333
No 239
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.72 E-value=3.3e-06 Score=79.34 Aligned_cols=116 Identities=18% Similarity=0.295 Sum_probs=51.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC---CCcE-EEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS---PRGI-YVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~---~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~ 366 (581)
+++|+|+||||||+||.++++.+ +..+ |+... +|..........+...-. .-.+.+-.+++|||+...+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~-----~L~~~l~~~~~~~~~~~~--~~~l~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS-----DLLDELKQSRSDGSYEEL--LKRLKRVDLLILDDLGYEP 121 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH-----HHHHHHHCCHCCTTHCHH--HHHHHTSSCEEEETCTSS-
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC-----ceeccccccccccchhhh--cCccccccEecccccceee
Confidence 89999999999999999998754 2222 23211 111110000001111000 0112345799999998876
Q ss_pred HH--HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccc
Q 040742 367 AE--HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRF 429 (581)
Q Consensus 367 ~~--~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RF 429 (581)
.. .. .|+++++... .. -.+|.|+|.....|.. ...+-.+..+++||.
T Consensus 122 ~~~~~~~~l~~ii~~R~------------~~-~~tIiTSN~~~~~l~~---~~~d~~~a~aildRl 171 (178)
T PF01695_consen 122 LSEWEAELLFEIIDERY------------ER-KPTIITSNLSPSELEE---VLGDRALAEAILDRL 171 (178)
T ss_dssp --HHHHHCTHHHHHHHH------------HT--EEEEEESS-HHHHHT------------------
T ss_pred ecccccccchhhhhHhh------------cc-cCeEeeCCCchhhHhh---ccccccccccccccc
Confidence 32 33 5678776532 11 2456699976322221 011113678888886
No 240
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.68 E-value=0.00068 Score=75.43 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=42.0
Q ss_pred HHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 244 IFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 244 ~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
+.+++...-..++.||+...+.+...+....... ..+ --++|+||||+|||++++.+++.+..
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~--------~~~-~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVLEN--------APK-RILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhccccc--------CCC-cEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3444444555678899887776665554432110 011 13899999999999999999998764
No 241
>PRK08116 hypothetical protein; Validated
Probab=97.65 E-value=9.4e-06 Score=81.39 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=53.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC---CcE-EEecCCCccCCceeEEEecCccccceecccee-eecCceEEEEcCCC--
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP---RGI-YVCGNATTKAGLTVAVVKDSVTNDYAFEAGAM-VLADSGLCCIDEFD-- 363 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~---~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l-~~a~~gil~iDEi~-- 363 (581)
.++|+|+||||||+||.++++.+- ..+ +++..... ..+..+.. + .+... ....+ .+.+..+|+|||++
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll-~~i~~~~~-~--~~~~~-~~~~~~~l~~~dlLviDDlg~e 190 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL-NRIKSTYK-S--SGKED-ENEIIRSLVNADLLILDDLGAE 190 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH-HHHHHHHh-c--ccccc-HHHHHHHhcCCCEEEEecccCC
Confidence 699999999999999999998752 222 23321100 00000000 0 00000 00001 12345799999995
Q ss_pred CCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC
Q 040742 364 KMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV 405 (581)
Q Consensus 364 ~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~ 405 (581)
..++..+ .|+++++... .....+|.|+|..
T Consensus 191 ~~t~~~~~~l~~iin~r~------------~~~~~~IiTsN~~ 221 (268)
T PRK08116 191 RDTEWAREKVYNIIDSRY------------RKGLPTIVTTNLS 221 (268)
T ss_pred CCCHHHHHHHHHHHHHHH------------HCCCCEEEECCCC
Confidence 4455555 7888887532 1123478888864
No 242
>PRK09183 transposase/IS protein; Provisional
Probab=97.63 E-value=1.1e-05 Score=80.51 Aligned_cols=119 Identities=16% Similarity=0.275 Sum_probs=60.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC---CCcEE-EecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS---PRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKM 365 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~---~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~ 365 (581)
-+++|+||||||||+|+.+++..+ +..+. +.... +..........+.+...... ......+++|||++..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~-----l~~~l~~a~~~~~~~~~~~~-~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAAD-----LLLQLSTAQRQGRYKTTLQR-GVMAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHH-----HHHHHHHHHHCCcHHHHHHH-HhcCCCEEEEcccccC
Confidence 389999999999999999997654 22332 22111 11000000000111000000 0123469999999986
Q ss_pred CH--HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccc
Q 040742 366 SA--EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRF 429 (581)
Q Consensus 366 ~~--~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RF 429 (581)
+. ... .|+++++... . +-++|.|+|...+.|.... ..+-.+..+++||.
T Consensus 177 ~~~~~~~~~lf~li~~r~------------~-~~s~iiTsn~~~~~w~~~~--~~d~~~~~ai~dRl 228 (259)
T PRK09183 177 PFSQEEANLFFQVIAKRY------------E-KGSMILTSNLPFGQWDQTF--AGDAALTSAMLDRL 228 (259)
T ss_pred CCChHHHHHHHHHHHHHH------------h-cCcEEEecCCCHHHHHHHh--cCchhHHHHHHHHH
Confidence 53 333 6788776521 0 1236778887654443110 01112445677775
No 243
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.59 E-value=0.0018 Score=63.35 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=50.4
Q ss_pred eEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeE
Q 040742 355 GLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVF 433 (581)
Q Consensus 355 gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~ 433 (581)
.+++|.|.|+++.+.| +|..-||.- ...|.+|..+|... .+-+|+.||+ +.+
T Consensus 129 Kvvvi~ead~LT~dAQ~aLRRTMEkY-------------s~~~RlIl~cns~S-------------riIepIrSRC-l~i 181 (351)
T KOG2035|consen 129 KVVVINEADELTRDAQHALRRTMEKY-------------SSNCRLILVCNSTS-------------RIIEPIRSRC-LFI 181 (351)
T ss_pred EEEEEechHhhhHHHHHHHHHHHHHH-------------hcCceEEEEecCcc-------------cchhHHhhhe-eEE
Confidence 5899999999999999 999999852 23466777778642 1778999998 544
Q ss_pred EcCCCCCHHHHHHHHHHHHh
Q 040742 434 ILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 434 ~~~d~~~~~~d~~i~~~il~ 453 (581)
-. +-|++++--.+...++.
T Consensus 182 Rv-paps~eeI~~vl~~v~~ 200 (351)
T KOG2035|consen 182 RV-PAPSDEEITSVLSKVLK 200 (351)
T ss_pred eC-CCCCHHHHHHHHHHHHH
Confidence 44 45555554555555554
No 244
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.58 E-value=1.4e-05 Score=82.33 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=59.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC---CcE-EEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP---RGI-YVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~---~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~ 366 (581)
+++|+|+||||||+|+.++++.+- ..+ |++.... ...+... ..+ .........-.+.+-.+|+|||+....
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l-~~~l~~~-~~~---~~~~~~~~~~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL-IEILREI-RFN---NDKELEEVYDLLINCDLLIIDDLGTEK 259 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH-HHHHHHH-Hhc---cchhHHHHHHHhccCCEEEEeccCCCC
Confidence 799999999999999999998762 222 2332111 0000000 000 000000000112234799999997764
Q ss_pred --HHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccc
Q 040742 367 --AEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRF 429 (581)
Q Consensus 367 --~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RF 429 (581)
+..+ .|+++++... ..+-.+|.|+|.....|. . .+++.++||+
T Consensus 260 ~t~~~~~~Lf~iin~R~------------~~~k~tIiTSNl~~~el~------~--~~~eri~SRL 305 (329)
T PRK06835 260 ITEFSKSELFNLINKRL------------LRQKKMIISTNLSLEELL------K--TYSERISSRL 305 (329)
T ss_pred CCHHHHHHHHHHHHHHH------------HCCCCEEEECCCCHHHHH------H--HHhHHHHHHH
Confidence 3344 7788876532 112346778886422221 0 1456677776
No 245
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.56 E-value=2.2e-05 Score=78.01 Aligned_cols=99 Identities=19% Similarity=0.315 Sum_probs=55.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC---CcEE-EecCCCccCCceeEEEecCc-cccceeccceee-ecCceEEEEcCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP---RGIY-VCGNATTKAGLTVAVVKDSV-TNDYAFEAGAMV-LADSGLCCIDEFDK 364 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~---~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~~~~~g~l~-~a~~gil~iDEi~~ 364 (581)
+++|+|+||||||+||-+++..+- .++. ++- .++...+ +... .|.. +..... +..-.+|+|||+..
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~-----~el~~~L-k~~~~~~~~--~~~l~~~l~~~dlLIiDDlG~ 178 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA-----PDLLSKL-KAAFDEGRL--EEKLLRELKKVDLLIIDDIGY 178 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH-----HHHHHHH-HHHHhcCch--HHHHHHHhhcCCEEEEecccC
Confidence 899999999999999999997763 2332 221 1111100 0000 0110 000111 33457999999998
Q ss_pred CCHH--HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCC
Q 040742 365 MSAE--HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYN 410 (581)
Q Consensus 365 ~~~~--~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~ 410 (581)
.+.. .. .+++++.+..-. +.. +.|+|...+.|+
T Consensus 179 ~~~~~~~~~~~~q~I~~r~~~------------~~~-~~tsN~~~~~~~ 214 (254)
T COG1484 179 EPFSQEEADLLFQLISRRYES------------RSL-IITSNLSFGEWD 214 (254)
T ss_pred ccCCHHHHHHHHHHHHHHHhh------------ccc-eeecCCChHHHH
Confidence 6633 33 566776653321 122 788898755544
No 246
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.55 E-value=0.00033 Score=76.52 Aligned_cols=80 Identities=25% Similarity=0.366 Sum_probs=48.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeee-c--CceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVL-A--DSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~-a--~~gil~iDEi~~~~ 366 (581)
-+||+||||.|||+||+.+|+.++.++. ++.... -++..++....+.. ... -++ | ..--++|||||-.+
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvEINASDe----Rt~~~v~~kI~~av--q~~-s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDE----RTAPMVKEKIENAV--QNH-SVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEEEeccccc----ccHHHHHHHHHHHH--hhc-cccccCCCcceEEEecccCCc
Confidence 5899999999999999999999988775 443221 11111111100000 000 111 1 13457899999998
Q ss_pred HHHH-HHHHHHH
Q 040742 367 AEHQ-ALLEAME 377 (581)
Q Consensus 367 ~~~~-~L~~~me 377 (581)
.... .|+..++
T Consensus 401 ~~~Vdvilslv~ 412 (877)
T KOG1969|consen 401 RAAVDVILSLVK 412 (877)
T ss_pred HHHHHHHHHHHH
Confidence 6554 6666665
No 247
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.00072 Score=69.39 Aligned_cols=138 Identities=17% Similarity=0.267 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCc----EEEecCC--------CccC
Q 040742 260 ELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRG----IYVCGNA--------TTKA 327 (581)
Q Consensus 260 e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~----~~~~~~~--------~~~~ 327 (581)
....+.+.-++..|.-. --.||.||+|+||+++|+.+|+.+-.. ...+|.- .+-.
T Consensus 8 ~~~~~~l~~~~~~~rl~-------------HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 8 QPTYQQITQAFQQGLGH-------------HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred HHHHHHHHHHHHcCCcc-------------eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 44555666666665311 147799999999999999999886321 0011110 0111
Q ss_pred CceeEEEecCcccc-ce---ec---cc---eeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCC-
Q 040742 328 GLTVAVVKDSVTND-YA---FE---AG---AMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSAR- 395 (581)
Q Consensus 328 ~l~~~~~~~~~~~~-~~---~~---~g---~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~- 395 (581)
++.. ..+..+. .. ++ .. .-......|++||+.++|+...+ +|+..||+- |..
T Consensus 75 D~~~---i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP-------------p~~~ 138 (325)
T PRK06871 75 DFHI---LEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEP-------------RPNT 138 (325)
T ss_pred CEEE---EccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCC-------------CCCe
Confidence 1111 0110010 00 00 00 00112346999999999998877 999999862 222
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCH
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDE 441 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~ 441 (581)
+.++.|.|+.. +.+.++||+ ..+.+...+.+
T Consensus 139 ~fiL~t~~~~~--------------llpTI~SRC-~~~~~~~~~~~ 169 (325)
T PRK06871 139 YFLLQADLSAA--------------LLPTIYSRC-QTWLIHPPEEQ 169 (325)
T ss_pred EEEEEECChHh--------------CchHHHhhc-eEEeCCCCCHH
Confidence 34556666632 889999999 54554444443
No 248
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.50 E-value=0.00018 Score=62.45 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=47.5
Q ss_pred HHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 245 FRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 245 ~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|...+...++||..+++.++-++.+-..... -+..+-+-|.|+||||||.+++.||+.+.
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~-------p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPN-------PRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC-------CCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 4557777888999999999998887765432211 12225677999999999999999998863
No 249
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00026 Score=77.68 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=85.6
Q ss_pred CceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCC--ccCCceeEEEecCccccceeccceeeecCceEEEEcCCCC
Q 040742 288 GDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNAT--TKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDK 364 (581)
Q Consensus 288 g~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~--~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~ 364 (581)
.+..+||.|+||+|||++.+++|+.++..++ +.+... ...+.+.+....-........+..+.+.+-.++-||-.+-
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgg 509 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGG 509 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCc
Confidence 3458999999999999999999999998877 443322 1111110000000001111234444455555555555441
Q ss_pred CCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHH
Q 040742 365 MSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELL 443 (581)
Q Consensus 365 ~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~ 443 (581)
..-... .+...|.. .. ...-..+..|+||++...+ +++.+.+-| +.-+..+.+++++
T Consensus 510 ed~rl~~~i~~~ls~---e~-----~~~~~~~~ivv~t~~s~~~-------------lp~~i~~~f-~~ei~~~~lse~q 567 (953)
T KOG0736|consen 510 EDARLLKVIRHLLSN---ED-----FKFSCPPVIVVATTSSIED-------------LPADIQSLF-LHEIEVPALSEEQ 567 (953)
T ss_pred hhHHHHHHHHHHHhc---cc-----ccCCCCceEEEEecccccc-------------CCHHHHHhh-hhhccCCCCCHHH
Confidence 111122 33333331 11 1112235788899887642 888999888 5566778899999
Q ss_pred HHHHHHHHHhhccC
Q 040742 444 DKRVSEHIMSLHSG 457 (581)
Q Consensus 444 d~~i~~~il~~~~~ 457 (581)
...+.+.+++.+.-
T Consensus 568 Rl~iLq~y~~~~~~ 581 (953)
T KOG0736|consen 568 RLEILQWYLNHLPL 581 (953)
T ss_pred HHHHHHHHHhcccc
Confidence 99988887776543
No 250
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.47 E-value=3.1e-05 Score=76.24 Aligned_cols=97 Identities=21% Similarity=0.279 Sum_probs=53.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC---CcEE-EecCCCccCCceeEEEecCc-cccceeccceeeecCceEEEEcCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP---RGIY-VCGNATTKAGLTVAVVKDSV-TNDYAFEAGAMVLADSGLCCIDEFDKM 365 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~---~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~~~~~g~l~~a~~gil~iDEi~~~ 365 (581)
+++|.|+||||||+|+.+++..+. ..+. ++. .++.... +... ........-.-.+..-.+++|||++..
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~-----~~l~~~l-~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV-----ADIMSAM-KDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH-----HHHHHHH-HHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 799999999999999999998763 2222 221 1111100 0000 000000000001234579999999887
Q ss_pred CHH--HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC
Q 040742 366 SAE--HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV 405 (581)
Q Consensus 366 ~~~--~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~ 405 (581)
... .. .|+++++.+. ..+..+|.|+|..
T Consensus 175 ~~s~~~~~~l~~Ii~~Ry------------~~~~~tiitSNl~ 205 (244)
T PRK07952 175 TESRYEKVIINQIVDRRS------------SSKRPTGMLTNSN 205 (244)
T ss_pred CCCHHHHHHHHHHHHHHH------------hCCCCEEEeCCCC
Confidence 632 23 5677776532 2234577888865
No 251
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.00048 Score=71.20 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=42.9
Q ss_pred CceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCe-EEEEeeCCCCCCCCCccChhhhcCCChhhhcccc
Q 040742 353 DSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSART-SVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD 430 (581)
Q Consensus 353 ~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~-~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFd 430 (581)
...|++||+.++|+.... +|+..||+ .|.++ .|+.|.||.. +.+.++||+
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEE-------------Pp~~t~fiL~t~~~~~--------------LLpTI~SRc- 183 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEE-------------PPPGTVFLLVSARIDR--------------LLPTILSRC- 183 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcC-------------CCcCcEEEEEECChhh--------------CcHHHHhcC-
Confidence 346999999999998877 99999985 12333 4556666542 889999999
Q ss_pred EeEEcCCCCCH
Q 040742 431 LVFILLDKPDE 441 (581)
Q Consensus 431 li~~~~d~~~~ 441 (581)
..+.+...+.+
T Consensus 184 q~i~~~~~~~~ 194 (342)
T PRK06964 184 RQFPMTVPAPE 194 (342)
T ss_pred EEEEecCCCHH
Confidence 54554444333
No 252
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.47 E-value=7.1e-05 Score=74.32 Aligned_cols=135 Identities=23% Similarity=0.229 Sum_probs=75.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEe----cCCCccCCceeEEEecCccccceeccce-ee--ecCceEEEEcCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVC----GNATTKAGLTVAVVKDSVTNDYAFEAGA-MV--LADSGLCCIDEFD 363 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~g~-l~--~a~~gil~iDEi~ 363 (581)
|+|++||||||||.-..+.|..+...--.+ -.+.+ .+..-.+++... ..+....+. +. .+.-..+++||.|
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS-d~rgid~vr~qi-~~fast~~~~~fst~~~fKlvILDEAD 141 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS-DDRGIDPVRQQI-HLFASTQQPTTYSTHAAFKLVILDEAD 141 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc-CccCCcchHHHH-HHHHhhccceeccccCceeEEEecchh
Confidence 999999999999998888888775421011 00111 111111111110 000000000 00 1123578999999
Q ss_pred CCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHH
Q 040742 364 KMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDEL 442 (581)
Q Consensus 364 ~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~ 442 (581)
.|..+.| +|..++++-+ .++.++.-+|+.. .+.+++.+||-- |-+ ..-+..
T Consensus 142 aMT~~AQnALRRviek~t-------------~n~rF~ii~n~~~-------------ki~pa~qsRctr-frf-~pl~~~ 193 (360)
T KOG0990|consen 142 AMTRDAQNALRRVIEKYT-------------ANTRFATISNPPQ-------------KIHPAQQSRCTR-FRF-APLTMA 193 (360)
T ss_pred HhhHHHHHHHHHHHHHhc-------------cceEEEEeccChh-------------hcCchhhccccc-CCC-CCCChh
Confidence 9999999 9998776533 2344555567652 178899999843 332 233444
Q ss_pred HHHHHHHHHHhhc
Q 040742 443 LDKRVSEHIMSLH 455 (581)
Q Consensus 443 ~d~~i~~~il~~~ 455 (581)
.+.....|+.+..
T Consensus 194 ~~~~r~shi~e~e 206 (360)
T KOG0990|consen 194 QQTERQSHIRESE 206 (360)
T ss_pred hhhhHHHHHHhcc
Confidence 5555556666543
No 253
>PRK06921 hypothetical protein; Provisional
Probab=97.43 E-value=1.9e-05 Score=79.09 Aligned_cols=24 Identities=42% Similarity=0.643 Sum_probs=22.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
+++|+|+||+|||+|+.++++.+.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999998763
No 254
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.00027 Score=67.08 Aligned_cols=28 Identities=29% Similarity=0.596 Sum_probs=24.8
Q ss_pred CceeeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 288 GDIHVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 288 g~~~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
|++|.|++||||+|||+++|-+|+.+..
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhc
Confidence 3469999999999999999999998743
No 255
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.36 E-value=0.0036 Score=62.79 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=42.2
Q ss_pred HHHhhCccccccHHHHHHH--HHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 248 IVQSICPSIYGHELVKAGI--TLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 248 l~~s~~p~I~G~e~vk~~l--ll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
|..--.|..+|+..+++++ +..|+..- ...+++ ++||+|++|.|||++++...+..|.
T Consensus 28 I~~i~~~rWIgY~~A~~~L~~L~~Ll~~P-----~~~Rmp-----~lLivG~snnGKT~Ii~rF~~~hp~ 87 (302)
T PF05621_consen 28 IAYIRADRWIGYPRAKEALDRLEELLEYP-----KRHRMP-----NLLIVGDSNNGKTMIIERFRRLHPP 87 (302)
T ss_pred HHHHhcCCeecCHHHHHHHHHHHHHHhCC-----cccCCC-----ceEEecCCCCcHHHHHHHHHHHCCC
Confidence 4444468899999988876 33455432 122333 7999999999999999999988764
No 256
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0011 Score=67.86 Aligned_cols=137 Identities=19% Similarity=0.240 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE---EecCC--------CccCC
Q 040742 260 ELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY---VCGNA--------TTKAG 328 (581)
Q Consensus 260 e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~---~~~~~--------~~~~~ 328 (581)
....+.+..++..|+-. --+||.||.|+||+.+|+++|+.+-..-. .+|.- .+-.+
T Consensus 9 ~~~~~~l~~~~~~~rl~-------------hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD 75 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIP-------------GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD 75 (319)
T ss_pred HHHHHHHHHHHHcCCcc-------------eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 45556666556555311 15899999999999999999987621100 01100 00111
Q ss_pred ceeEEEecCccccce---ec------cceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCe-E
Q 040742 329 LTVAVVKDSVTNDYA---FE------AGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSART-S 397 (581)
Q Consensus 329 l~~~~~~~~~~~~~~---~~------~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~-~ 397 (581)
+.. +..+..+.... ++ ...-......|++||+.++|+.... +|+..+|+- |.++ .
T Consensus 76 ~~~-i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~f 141 (319)
T PRK06090 76 LHV-IKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEP-------------APNCLF 141 (319)
T ss_pred EEE-EecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC-------------CCCeEE
Confidence 110 00000000000 00 0001122346999999999998877 999999861 2333 3
Q ss_pred EEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCC
Q 040742 398 VLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDK 438 (581)
Q Consensus 398 viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~ 438 (581)
|+.|.|+.. +.+.++||+ ..+.++..
T Consensus 142 iL~t~~~~~--------------lLpTI~SRC-q~~~~~~~ 167 (319)
T PRK06090 142 LLVTHNQKR--------------LLPTIVSRC-QQWVVTPP 167 (319)
T ss_pred EEEECChhh--------------ChHHHHhcc-eeEeCCCC
Confidence 455556532 889999999 44554433
No 257
>PHA02774 E1; Provisional
Probab=97.35 E-value=0.0021 Score=69.72 Aligned_cols=111 Identities=19% Similarity=0.194 Sum_probs=67.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE--EecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC-H
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY--VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS-A 367 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~-~ 367 (581)
.++|+||||||||+++-++++.+...+. ++. ...|.+. .+++..++++||+.... .
T Consensus 436 civ~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~-----------------~s~FwLq----pl~d~ki~vlDD~t~~~w~ 494 (613)
T PHA02774 436 CLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS-----------------KSHFWLQ----PLADAKIALLDDATHPCWD 494 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC-----------------ccccccc----hhccCCEEEEecCcchHHH
Confidence 7999999999999999999999864432 221 0112211 23356799999994332 2
Q ss_pred HHH-HHHHHHHccEEEEeeCC---eeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcC
Q 040742 368 EHQ-ALLEAMEQQCVSVAKAG---LVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILL 436 (581)
Q Consensus 368 ~~~-~L~~~me~~~i~i~k~g---~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~ 436 (581)
-.. .|..+|+...+.+.+.. ..... .-+|.|+|..... +. =-..|.||+ .+|-++
T Consensus 495 y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~---pPlIITSN~d~~~-~~---------~~~yL~sRi-~~f~F~ 553 (613)
T PHA02774 495 YIDTYLRNALDGNPVSIDCKHKAPVQIKC---PPLLITSNIDVKA-ED---------RYKYLHSRI-TVFEFP 553 (613)
T ss_pred HHHHHHHHHcCCCcceeeecccCcccccC---CCEEEecCCCccc-ch---------hhHHhhhhE-EEEECC
Confidence 233 67788887777776322 22222 2378888964211 10 114777887 445543
No 258
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.00057 Score=70.43 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=41.2
Q ss_pred cCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhcccc
Q 040742 352 ADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD 430 (581)
Q Consensus 352 a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFd 430 (581)
+...|++||+++.++...+ +|+..||+.. +....|+.|.|+.. +.+.+.||+
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~------------~~~~~Ilvth~~~~--------------ll~ti~SRc- 164 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPP------------PQVVFLLVSHAADK--------------VLPTIKSRC- 164 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCc------------CCCEEEEEeCChHh--------------ChHHHHHHh-
Confidence 3457999999999998887 9999998631 11234555555532 888999999
Q ss_pred EeEEcCC
Q 040742 431 LVFILLD 437 (581)
Q Consensus 431 li~~~~d 437 (581)
.++.+..
T Consensus 165 ~~~~~~~ 171 (325)
T PRK08699 165 RKMVLPA 171 (325)
T ss_pred hhhcCCC
Confidence 4454444
No 259
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.00054 Score=70.86 Aligned_cols=121 Identities=20% Similarity=0.278 Sum_probs=68.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc----EEEecCC--------CccCCceeEEEecCccccce------ecc---cee
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG----IYVCGNA--------TTKAGLTVAVVKDSVTNDYA------FEA---GAM 349 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~----~~~~~~~--------~~~~~l~~~~~~~~~~~~~~------~~~---g~l 349 (581)
-+||.||+|+||+++|.++|+.+-.. -..+|.- .+-.++.. +..+....... +.. -.-
T Consensus 26 A~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~-i~p~~~~~~I~idqiR~l~~~~~~~~ 104 (334)
T PRK07993 26 ALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYT-LTPEKGKSSLGVDAVREVTEKLYEHA 104 (334)
T ss_pred EEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEE-EecccccccCCHHHHHHHHHHHhhcc
Confidence 57799999999999999999886210 0011110 01111110 00000000000 000 001
Q ss_pred eecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCC-eEEEEeeCCCCCCCCCccChhhhcCCChhhhc
Q 040742 350 VLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSAR-TSVLAAANPVGGHYNRAKTVNENLKMSAALLS 427 (581)
Q Consensus 350 ~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~-~~viaa~Np~~g~~~~~~~~~~~~~l~~all~ 427 (581)
......|++||+.++|+.... +|+..||+- |.+ +.++.|.||.. +.+.++|
T Consensus 105 ~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~~--------------lLpTIrS 157 (334)
T PRK07993 105 RLGGAKVVWLPDAALLTDAAANALLKTLEEP-------------PENTWFFLACREPAR--------------LLATLRS 157 (334)
T ss_pred ccCCceEEEEcchHhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChhh--------------ChHHHHh
Confidence 123457999999999998877 999999861 222 34566666642 8899999
Q ss_pred cccEeEEcCCCCCH
Q 040742 428 RFDLVFILLDKPDE 441 (581)
Q Consensus 428 RFdli~~~~d~~~~ 441 (581)
|+-. +.++ .++.
T Consensus 158 RCq~-~~~~-~~~~ 169 (334)
T PRK07993 158 RCRL-HYLA-PPPE 169 (334)
T ss_pred cccc-ccCC-CCCH
Confidence 9943 4433 3443
No 260
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=97.27 E-value=0.00085 Score=55.99 Aligned_cols=63 Identities=32% Similarity=0.394 Sum_probs=56.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCcc
Q 040742 499 GDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAE 578 (581)
Q Consensus 499 ~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~ 578 (581)
..+..++...|++|+ .|++++..++...+... .+|.|....++|+|++.|.|.+++.|+.+
T Consensus 27 ~~Na~l~~~~l~~~~---------~l~~~~~~~l~~~~~~~----------~lS~R~~~rilrvARTIADL~~~~~I~~~ 87 (96)
T PF13335_consen 27 KCNAQLPGEELRKYC---------PLSSEAKKLLEQAAEKL----------NLSARGYHRILRVARTIADLEGSERITRE 87 (96)
T ss_pred CccccCCHHHHHhHc---------CCCHHHHHHHHHHHHHc----------CcCHHHHHHHHHHHHHHHhHcCCCCCCHH
Confidence 345679999999997 78999999999988754 68999999999999999999999999999
Q ss_pred cc
Q 040742 579 DA 580 (581)
Q Consensus 579 Dv 580 (581)
||
T Consensus 88 hi 89 (96)
T PF13335_consen 88 HI 89 (96)
T ss_pred HH
Confidence 87
No 261
>PF13173 AAA_14: AAA domain
Probab=97.26 E-value=0.00028 Score=62.41 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=44.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC---CcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP---RGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSA 367 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~ 367 (581)
.++|.||.|+|||++++.+++... ..+|++........+.. .+ . -.+..+. ......++||||+++++.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~---~~-~-~~~~~~~---~~~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD---PD-L-LEYFLEL---IKPGKKYIFIDEIQYLPD 75 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh---hh-h-HHHHHHh---hccCCcEEEEehhhhhcc
Confidence 699999999999999999997654 33444433221111000 00 0 0000000 011457899999999985
Q ss_pred HHHHHHHHHHc
Q 040742 368 EHQALLEAMEQ 378 (581)
Q Consensus 368 ~~~~L~~~me~ 378 (581)
-...+....+.
T Consensus 76 ~~~~lk~l~d~ 86 (128)
T PF13173_consen 76 WEDALKFLVDN 86 (128)
T ss_pred HHHHHHHHHHh
Confidence 33345455543
No 262
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.0032 Score=56.81 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=22.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
..+.+.|+||+|||+++..++..+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 4799999999999999999997764
No 263
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.16 E-value=0.00068 Score=62.98 Aligned_cols=23 Identities=35% Similarity=0.736 Sum_probs=20.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
|++|.|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 69999999999999999998887
No 264
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.08 E-value=0.00018 Score=70.95 Aligned_cols=122 Identities=20% Similarity=0.233 Sum_probs=74.0
Q ss_pred HHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCC
Q 040742 245 FRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNAT 324 (581)
Q Consensus 245 ~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~ 324 (581)
++.|...+...++||..++..++-++.+-.....+ +..+-+=|.|.|||||+..++.||+.+.+. |..+
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~p-------~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~----Gl~S 141 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWANPNP-------RKPLVLSFHGWTGTGKNYVAEIIAENLYRG----GLRS 141 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCC-------CCCeEEEecCCCCCchhHHHHHHHHHHHhc----cccc
Confidence 56788888889999999999998888765432221 222567788999999999999999887431 1111
Q ss_pred ccCCceeEEEecCcc---ccce-----eccceeeecCceEEEEcCCCCCCHHHH-HHHHHHH
Q 040742 325 TKAGLTVAVVKDSVT---NDYA-----FEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAME 377 (581)
Q Consensus 325 ~~~~l~~~~~~~~~~---~~~~-----~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me 377 (581)
.-.-...+...-+.. ..+. ...+.+......++++||.|+|++... .|...++
T Consensus 142 ~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 142 PFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 000000000000000 0000 111223334578999999999998765 6666665
No 265
>PHA02624 large T antigen; Provisional
Probab=97.04 E-value=0.0022 Score=69.92 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=67.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC---
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS--- 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~--- 366 (581)
-+||+||||||||+++.++++.++..+. +++... ...| .-| .+++..++++|++....
T Consensus 433 ~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~--------------ks~F--wL~--pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 433 YWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPD--------------KLNF--ELG--CAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcc--------------hhHH--Hhh--hhhhceEEEeeecccccccc
Confidence 6999999999999999999999954332 321111 0111 111 23456778888874221
Q ss_pred ----HH-----HHHHHHHHHcc-EEEEeeC---CeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeE
Q 040742 367 ----AE-----HQALLEAMEQQ-CVSVAKA---GLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVF 433 (581)
Q Consensus 367 ----~~-----~~~L~~~me~~-~i~i~k~---g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~ 433 (581)
+. ...|..+|+.. .+++.+- -.....|+ .|.|+|.-. ||..+.-||-.++
T Consensus 495 ~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PP---lliT~Ney~--------------iP~T~~~Rf~~~~ 557 (647)
T PHA02624 495 KDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPP---GIVTMNEYL--------------IPQTVKARFAKVL 557 (647)
T ss_pred ccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCC---eEEeecCcc--------------cchhHHHHHHHhc
Confidence 11 12566677654 4555422 12233343 688899632 8999999996655
Q ss_pred EcCC
Q 040742 434 ILLD 437 (581)
Q Consensus 434 ~~~d 437 (581)
.+..
T Consensus 558 ~F~~ 561 (647)
T PHA02624 558 DFKP 561 (647)
T ss_pred cccc
Confidence 5443
No 266
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.88 E-value=0.019 Score=62.80 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=24.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
-+||.||||+|||+.++.+|+.++..+.
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 5889999999999999999999876543
No 267
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.84 E-value=0.01 Score=60.74 Aligned_cols=122 Identities=11% Similarity=0.099 Sum_probs=69.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH-H
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE-H 369 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~-~ 369 (581)
-++|+|+.|+|||++++.+..+++.... +... ...+ .. .+ +..+ +...+...-+++.||++.-... .
T Consensus 78 ~~~l~G~g~nGKStl~~~l~~l~G~~~~-~~~~--~~~~-~~--~~--~~~f----~~a~l~gk~l~~~~E~~~~~~~~~ 145 (304)
T TIGR01613 78 LFFLYGNGGNGKSTFQNLLSNLLGDYAT-TAVA--SLKM-NE--FQ--EHRF----GLARLEGKRAVIGDEVQKGYRDDE 145 (304)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhChhhc-cCCc--chhh-hh--cc--CCCc----hhhhhcCCEEEEecCCCCCccccH
Confidence 6899999999999999999998875321 0000 0000 00 00 0111 1112334567889999754322 2
Q ss_pred HHHHHHHHccEEEEeeCC-eeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEc
Q 040742 370 QALLEAMEQQCVSVAKAG-LVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFIL 435 (581)
Q Consensus 370 ~~L~~~me~~~i~i~k~g-~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~ 435 (581)
..|..+.....+++..-+ ........+.++.++|.....-+ .+.++.+|+ +++-+
T Consensus 146 ~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~----------~~~a~~RR~-~vi~f 201 (304)
T TIGR01613 146 STFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRG----------FDGGIKRRL-RIIPF 201 (304)
T ss_pred HhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCC----------CChhheeeE-EEEec
Confidence 245555555566665222 33444556778888886532222 567999998 54443
No 268
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=96.77 E-value=0.00088 Score=72.90 Aligned_cols=180 Identities=17% Similarity=0.171 Sum_probs=95.3
Q ss_pred ccCCceeEEEecCcccc-----ceeccceeeecCceEEEEcCCCCCCH-HHH-HHHHHHHccEEEEeeCC----------
Q 040742 325 TKAGLTVAVVKDSVTND-----YAFEAGAMVLADSGLCCIDEFDKMSA-EHQ-ALLEAMEQQCVSVAKAG---------- 387 (581)
Q Consensus 325 ~~~~l~~~~~~~~~~~~-----~~~~~g~l~~a~~gil~iDEi~~~~~-~~~-~L~~~me~~~i~i~k~g---------- 387 (581)
+...|.+.+......|. ..++||++..|+||+|+||--+.+.. ... .|..+|..+.+.+...+
T Consensus 299 t~~nLfG~Ie~~~~~G~~~td~~~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~~l 378 (509)
T PF13654_consen 299 TYSNLFGRIEYESEMGTLVTDFTLIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSSTVSL 378 (509)
T ss_dssp -HHHHH-EE-----------GGGGEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGGGG-
T ss_pred CHHHCcEEEEEECCCCCEecCcceEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCCCCC
Confidence 34445555554443332 23789999999999999999998884 556 89999999999887442
Q ss_pred eeEeeCCCeEEEEeeCCC-CCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCccccc
Q 040742 388 LVASLSARTSVLAAANPV-GGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAK 466 (581)
Q Consensus 388 ~~~~~~~~~~viaa~Np~-~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~ 466 (581)
...+.|.++-||...++. +.... ..++.|..-|.+..-+-+..
T Consensus 379 ~PepIpl~vKVILiG~~~~y~~L~---------~~D~dF~~lFkv~aef~~~~--------------------------- 422 (509)
T PF13654_consen 379 EPEPIPLDVKVILIGDRELYYLLY---------EYDPDFYKLFKVKAEFDSEM--------------------------- 422 (509)
T ss_dssp B-S-EE---EEEEEE-TTHHHHS----------HHHHHHHHHHSEEEE--SEE---------------------------
T ss_pred CCCCcceEEEEEEEcCHHHHHHHH---------HhCHHHHhCCCEEEEccccC---------------------------
Confidence 011233344444444442 10000 13445555554322221111
Q ss_pred CcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHH----HhcCCCcCCHHHHHHHHHHHHHHhhc
Q 040742 467 KPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYA----RTFVFPRMTKPAAEILQKFYLKLRDH 542 (581)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~a----r~~i~p~ls~~a~~~i~~~y~~lR~~ 542 (581)
..+.+-+..|+.|. +..--|.|+.+|...+.+|...+
T Consensus 423 ------------------------------------~~~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R~--- 463 (509)
T PF13654_consen 423 ------------------------------------PRTEENIRQYARFIASICQKEGLPPFDRSAVARLIEYSARL--- 463 (509)
T ss_dssp ------------------------------------E--HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHHHHHHC---
T ss_pred ------------------------------------CCCHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH---
Confidence 12233355555443 33334679999999999987765
Q ss_pred CCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 543 NTSADSTPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 543 ~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
.. +...+....+..|++-|-..|+....+.|+.+||+
T Consensus 464 ~q--~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~ 500 (509)
T PF13654_consen 464 DQ--DKLSLRFSWLADLLREANYWARKEGAKVITAEHVE 500 (509)
T ss_dssp C---SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHH
T ss_pred hC--CEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Confidence 11 24566777899999999999999999999999873
No 269
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.76 E-value=0.002 Score=64.75 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=66.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEE-ecC---CCccCCceeEEEecCccccceecc-----ce----eeecCceEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYV-CGN---ATTKAGLTVAVVKDSVTNDYAFEA-----GA----MVLADSGLC 357 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~~~~~~-----g~----l~~a~~gil 357 (581)
-.||.||+|+||+.+|..+|+.+-..-.. ... ...-.++.. +..+..+.....+. .. -..+...|+
T Consensus 21 AyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~-i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv~ 99 (290)
T PRK05917 21 AIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHE-FSPQGKGRLHSIETPRAIKKQIWIHPYESPYKIY 99 (290)
T ss_pred eEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEE-EecCCCCCcCcHHHHHHHHHHHhhCccCCCceEE
Confidence 57799999999999999999876321000 000 000111110 00010000000000 00 011335699
Q ss_pred EEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCC-eEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEc
Q 040742 358 CIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSAR-TSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFIL 435 (581)
Q Consensus 358 ~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~-~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~ 435 (581)
+||+.++|+.+.+ +|+..||+- |.. +.++.|.|+.. +.+.++||+-. +.+
T Consensus 100 ii~~ad~mt~~AaNaLLK~LEEP-------------p~~~~fiL~~~~~~~--------------ll~TI~SRcq~-~~~ 151 (290)
T PRK05917 100 IIHEADRMTLDAISAFLKVLEDP-------------PQHGVIILTSAKPQR--------------LPPTIRSRSLS-IHI 151 (290)
T ss_pred EEechhhcCHHHHHHHHHHhhcC-------------CCCeEEEEEeCChhh--------------CcHHHHhcceE-EEc
Confidence 9999999999887 999999861 222 34566666642 88999999944 444
Q ss_pred CC
Q 040742 436 LD 437 (581)
Q Consensus 436 ~d 437 (581)
++
T Consensus 152 ~~ 153 (290)
T PRK05917 152 PM 153 (290)
T ss_pred cc
Confidence 43
No 270
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.74 E-value=0.0038 Score=68.30 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=90.4
Q ss_pred HHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC---------CCcEE-
Q 040742 249 VQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS---------PRGIY- 318 (581)
Q Consensus 249 ~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~---------~~~~~- 318 (581)
.+.+-..+-+.+.....|-..+-+--.. ++ .| .-+.+.|-||||||+....+.+.+ |.-.|
T Consensus 391 ls~vp~sLpcRe~E~~~I~~f~~~~i~~---~~-----~g-~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yv 461 (767)
T KOG1514|consen 391 LSAVPESLPCRENEFSEIEDFLRSFISD---QG-----LG-SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYV 461 (767)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCC---CC-----Cc-eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEE
Confidence 3344445556676666666555443211 00 01 258889999999999999888744 33333
Q ss_pred -EecCCCccCCceeEEEecCccccce------------e-ccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEE
Q 040742 319 -VCGNATTKAGLTVAVVKDSVTNDYA------------F-EAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSV 383 (581)
Q Consensus 319 -~~~~~~~~~~l~~~~~~~~~~~~~~------------~-~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i 383 (581)
++|.......-.....+...+|... + .++ ......|++|||+|.+-...| .|+...+
T Consensus 462 eINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k--~~~~~~VvLiDElD~Lvtr~QdVlYn~fd------ 533 (767)
T KOG1514|consen 462 EINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPK--PKRSTTVVLIDELDILVTRSQDVLYNIFD------ 533 (767)
T ss_pred EEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCC--CCCCCEEEEeccHHHHhcccHHHHHHHhc------
Confidence 5554332211000001111111110 0 111 112347999999999887666 6666553
Q ss_pred eeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhh-----hccccEeEEcCCCCCHHHHHHH
Q 040742 384 AKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAAL-----LSRFDLVFILLDKPDELLDKRV 447 (581)
Q Consensus 384 ~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~al-----l~RFdli~~~~d~~~~~~d~~i 447 (581)
+ ...-+.+.+|||-+|... +++.+ -+|.++..+.+...+.++.++|
T Consensus 534 ---W-pt~~~sKLvvi~IaNTmd--------------lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~I 584 (767)
T KOG1514|consen 534 ---W-PTLKNSKLVVIAIANTMD--------------LPERLLMNRVSSRLGLTRICFQPYTHEQLQEI 584 (767)
T ss_pred ---C-CcCCCCceEEEEeccccc--------------CHHHHhccchhhhccceeeecCCCCHHHHHHH
Confidence 1 122356788999999752 44444 3688887777776666665555
No 271
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.67 E-value=0.0016 Score=62.13 Aligned_cols=95 Identities=17% Similarity=0.248 Sum_probs=61.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEH 369 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~ 369 (581)
.-++|+|+.|+|||++++.|... .|...... . ..... ...+...-++.+||++.+....
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~----~--------~~kd~-----~~~l~~~~iveldEl~~~~k~~ 111 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPE----YFSDSIND----F--------DDKDF-----LEQLQGKWIVELDELDGLSKKD 111 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHH----hccCcccc----C--------CCcHH-----HHHHHHhHheeHHHHhhcchhh
Confidence 47899999999999999998533 22211110 0 00111 0112234578999999998655
Q ss_pred H-HHHHHHHccEEEEeeC--CeeEeeCCCeEEEEeeCCC
Q 040742 370 Q-ALLEAMEQQCVSVAKA--GLVASLSARTSVLAAANPV 405 (581)
Q Consensus 370 ~-~L~~~me~~~i~i~k~--g~~~~~~~~~~viaa~Np~ 405 (581)
. .|-..+......+... ......+-+++++||+|..
T Consensus 112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCc
Confidence 5 7777777766665433 3456778889999999975
No 272
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0015 Score=71.21 Aligned_cols=142 Identities=16% Similarity=0.248 Sum_probs=76.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEE-----EecCCCccCCceeEEEecCccccce-eccceeeecCceEEEEcCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIY-----VCGNATTKAGLTVAVVKDSVTNDYA-FEAGAMVLADSGLCCIDEFD 363 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~l~~a~~gil~iDEi~ 363 (581)
.|+||.|++|+|||.|++++++.+....+ +++....... .+.....+. .-...+ .....|+++|++|
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~------~e~iQk~l~~vfse~~-~~~PSiIvLDdld 504 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS------LEKIQKFLNNVFSEAL-WYAPSIIVLDDLD 504 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh------HHHHHHHHHHHHHHHH-hhCCcEEEEcchh
Confidence 49999999999999999999998764322 2222111000 000000000 000111 1236799999998
Q ss_pred CCCH--H-------HH--HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEe
Q 040742 364 KMSA--E-------HQ--ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLV 432 (581)
Q Consensus 364 ~~~~--~-------~~--~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli 432 (581)
.+-. + .. .|-.++.+ .+ -+..+.+..+.+||+.+... ++++ .|..+. +|+.+
T Consensus 505 ~l~~~s~~e~~q~~~~~~rla~flnq-vi-----~~y~~~~~~ia~Iat~qe~q-tl~~--------~L~s~~--~Fq~~ 567 (952)
T KOG0735|consen 505 CLASASSNENGQDGVVSERLAAFLNQ-VI-----KIYLKRNRKIAVIATGQELQ-TLNP--------LLVSPL--LFQIV 567 (952)
T ss_pred hhhccCcccCCcchHHHHHHHHHHHH-HH-----HHHHccCcEEEEEEechhhh-hcCh--------hhcCcc--ceEEE
Confidence 7643 1 11 11122211 11 11223455578999988642 1111 133333 78765
Q ss_pred EEcCCCCCHHHHHHHHHHHHhhcc
Q 040742 433 FILLDKPDELLDKRVSEHIMSLHS 456 (581)
Q Consensus 433 ~~~~d~~~~~~d~~i~~~il~~~~ 456 (581)
.- ...|+.....+|.++++....
T Consensus 568 ~~-L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 568 IA-LPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred Ee-cCCcchhHHHHHHHHHHHhhh
Confidence 55 467888888889888887544
No 273
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.58 E-value=0.0037 Score=56.96 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+++++|+||+|||+++..++..+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998776
No 274
>PF05729 NACHT: NACHT domain
Probab=96.55 E-value=0.0058 Score=55.95 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-+++.|+||+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 38899999999999999998665
No 275
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.50 E-value=0.002 Score=57.84 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=21.6
Q ss_pred eEEeCCCCChHHHHHHHHHHHCC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~ 314 (581)
++++|+||+|||++++.+++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999998876
No 276
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.49 E-value=0.002 Score=56.04 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.2
Q ss_pred eEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
|++.|+||+|||++++.+++.++-.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~ 26 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFP 26 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCe
Confidence 7899999999999999999987543
No 277
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.44 E-value=0.058 Score=53.52 Aligned_cols=103 Identities=22% Similarity=0.274 Sum_probs=61.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccce-eeecCceEEEEcCCCCCCHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGA-MVLADSGLCCIDEFDKMSAEH 369 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~-l~~a~~gil~iDEi~~~~~~~ 369 (581)
-.||.|++|-=|+..=..+.... -+|.-+..+ ++ .||+||||++.++-+.
T Consensus 254 lALFsGdTGEIr~EvRdqin~KV--------------------------~eWreEGKAeiv---pGVLFIDEvHMLDIEc 304 (454)
T KOG2680|consen 254 LALFSGDTGEIRSEVRDQINTKV--------------------------AEWREEGKAEIV---PGVLFIDEVHMLDIEC 304 (454)
T ss_pred EEEEeCCcccccHHHHHHHHHHH--------------------------HHHHhcCCeeec---cceEEEeeehhhhhHH
Confidence 47889999988887655544321 122222211 22 6999999999998776
Q ss_pred H-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC----CCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHH
Q 040742 370 Q-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV----GGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDEL 442 (581)
Q Consensus 370 ~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~----~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~ 442 (581)
- -|..++|+..- -.++.|+|.. .|+.. .+. -++|-.|+||. +|+...++..++
T Consensus 305 FsFlNrAlE~d~~--------------PiiimaTNrgit~iRGTn~--~Sp---hGiP~D~lDR~-lII~t~py~~~d 362 (454)
T KOG2680|consen 305 FSFLNRALENDMA--------------PIIIMATNRGITRIRGTNY--RSP---HGIPIDLLDRM-LIISTQPYTEED 362 (454)
T ss_pred HHHHHHHhhhccC--------------cEEEEEcCCceEEeecCCC--CCC---CCCcHHHhhhh-heeecccCcHHH
Confidence 6 56678775321 1245555653 12211 111 14999999998 666655554443
No 278
>KOG2545 consensus Conserved membrane protein [Function unknown]
Probab=96.43 E-value=0.52 Score=48.83 Aligned_cols=232 Identities=18% Similarity=0.177 Sum_probs=137.7
Q ss_pred cHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCC--hHHHHHHHHHHHCCCcEEE--ecCCCccCCceeEEE
Q 040742 259 HELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGL--GKSQLLQAAAAVSPRGIYV--CGNATTKAGLTVAVV 334 (581)
Q Consensus 259 ~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGt--GKT~la~~la~~~~~~~~~--~~~~~~~~~l~~~~~ 334 (581)
...+-.-+++.|++.+-... ....-|...+=|+|=|-- -=|+|-+.+-.++|.+++. +-.....+.+ ...
T Consensus 283 d~iAAeyLllhLlStV~~R~----d~l~iGkftlNL~ncpkes~f~tqLy~iL~~Llpas~~~pmtie~lNta~f--~Pk 356 (543)
T KOG2545|consen 283 DNIAAEYLLLHLLSTVYHRT----DGLVIGKFTLNLTNCPKESIFVTQLYSILRPLLPASVIQPMTIEELNTAPF--YPK 356 (543)
T ss_pred chHHHHHHHHHHHHHhhccc----cceEeeeeEEeecCCCchhHHHHHHHHHHHHhchhhheeeeeHHhhcccCc--ccc
Confidence 34445556666665432110 001223345556655544 4456777777777877662 2211111111 111
Q ss_pred ecCccccceeccceeeecCceEEEEcCCCCCCH--------HHHHHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCC
Q 040742 335 KDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSA--------EHQALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVG 406 (581)
Q Consensus 335 ~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~--------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~ 406 (581)
+|. +.-.+.+|.+-+|.+-.++|||=..-.. ..+.|-..+++|.+...-.-.....++++.|+..+--
T Consensus 357 kDy--etNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~~Qkl~ydfqyyqme~~~nv~vlIlSeG-- 432 (543)
T KOG2545|consen 357 KDY--ETNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLISQQKLTYDFQYYQMEVHSNVRVLILSEG-- 432 (543)
T ss_pred ccc--cccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhhccccceecceEEEEeccCceEEEeeCC--
Confidence 221 2223678999999999999999644321 1346778889998877654555677777777776543
Q ss_pred CCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccc
Q 040742 407 GHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGS 486 (581)
Q Consensus 407 g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (581)
+-- +|..+-=|.+ ++.++. +
T Consensus 433 -rsi----------lPADl~i~lq-----p~~v~~----------l---------------------------------- 452 (543)
T KOG2545|consen 433 -RSI----------LPADLGIRLQ-----PDSVDT----------L---------------------------------- 452 (543)
T ss_pred -ccc----------CcccccccCC-----CCCCCc----------c----------------------------------
Confidence 210 3322211110 111111 0
Q ss_pred hhhhhccCCCCCCCCCCCC--HHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHH
Q 040742 487 LVSKLRLDPKKDGDFHPLP--APLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAE 564 (581)
Q Consensus 487 ~~~~~~~~~~~~~~~~~i~--~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~ 564 (581)
..+.| ....+.|+..+|.. .-.++++..++|..-|+++|+... ......|-.++-.|+
T Consensus 453 --------------e~~tps~l~q~rcyltt~r~l-~~nIsee~t~~iq~dfV~mRq~n~-----~snaddLs~lLv~sR 512 (543)
T KOG2545|consen 453 --------------EFPTPSDLLQFRCYLTTMRNL-RANISEEMTDYIQSDFVSMRQYNK-----ESNADDLSLLLVCSR 512 (543)
T ss_pred --------------ccCChhHHHHHHHHHHHHHhh-ccCccHHHHHHHHHHHHHHHhhCc-----ccchhHHHHHHHHHH
Confidence 00111 12256677666663 667999999999999999998765 345788999999999
Q ss_pred HHHhccCCCCCCcccc
Q 040742 565 ARARLDLREEITAEDA 580 (581)
Q Consensus 565 a~A~l~~~~~V~~~Dv 580 (581)
..++-.++++++.+|-
T Consensus 513 lls~S~G~ttlsre~w 528 (543)
T KOG2545|consen 513 LLSKSFGRTTLSREDW 528 (543)
T ss_pred HHHHhhccchhhHHHH
Confidence 9999999999998874
No 279
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.42 E-value=0.00089 Score=69.89 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=23.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+|++|+|||+|+-.....+|.
T Consensus 64 GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred eEEEECCCCCchhHHHHHHHHhCCc
Confidence 6999999999999999999998874
No 280
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.42 E-value=0.02 Score=58.30 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=65.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE--EEecCCCccCCceeEEEecCccccce----------eccceeeecCceEEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI--YVCGNATTKAGLTVAVVKDSVTNDYA----------FEAGAMVLADSGLCC 358 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~g~l~~a~~gil~ 358 (581)
-.||+|+.|+||+.+++.+++.+-..- ...+ .....++. ..+..++... +.-.+....+..|++
T Consensus 20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~-~~~p~n~~---~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNE-QELPANII---LFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCC-CCCCcceE---EeccCCCcCCHHHHHHHHHHhccCCcccCCceEEE
Confidence 356999999999999999998862100 0000 00000000 0110000000 000011112567999
Q ss_pred EcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEE-EeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcC
Q 040742 359 IDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVL-AAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILL 436 (581)
Q Consensus 359 iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~vi-aa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~ 436 (581)
||+.++|+...+ +|+..||+ .|..+.+| .|.|+. .+-+++.||+ .++-+.
T Consensus 96 I~~~e~m~~~a~NaLLK~LEE-------------Pp~~t~~il~~~~~~--------------kll~TI~SRc-~~~~f~ 147 (299)
T PRK07132 96 IKNIEKTSNSLLNALLKTIEE-------------PPKDTYFLLTTKNIN--------------KVLPTIVSRC-QVFNVK 147 (299)
T ss_pred EecccccCHHHHHHHHHHhhC-------------CCCCeEEEEEeCChH--------------hChHHHHhCe-EEEECC
Confidence 999999998777 99999986 13334444 444552 1778999998 445544
Q ss_pred CCCC
Q 040742 437 DKPD 440 (581)
Q Consensus 437 d~~~ 440 (581)
..+.
T Consensus 148 ~l~~ 151 (299)
T PRK07132 148 EPDQ 151 (299)
T ss_pred CCCH
Confidence 4333
No 281
>PHA00729 NTP-binding motif containing protein
Probab=96.37 E-value=0.0027 Score=61.38 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+++++|+||||||+||.++++.+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3899999999999999999998764
No 282
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.31 E-value=0.018 Score=59.39 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=66.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH-H
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE-H 369 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~-~ 369 (581)
=++++|||+||||.++-.+.+.+...+..- .++ ...|.+.| +++..|.+||+.....=+ .
T Consensus 264 Clvi~GPPdTGKS~F~~SLi~Fl~GkViSf-~Ns--------------~ShFWLqP----L~d~Ki~llDDAT~~cW~Y~ 324 (432)
T PF00519_consen 264 CLVIYGPPDTGKSMFCMSLIKFLKGKVISF-VNS--------------KSHFWLQP----LADAKIALLDDATYPCWDYI 324 (432)
T ss_dssp EEEEESSCCCSHHHHHHHHHHHHTSEEE-G-GGT--------------TSCGGGGG----GCT-SSEEEEEE-HHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHHHHhCCEEEEe-cCC--------------CCcccccc----hhcCcEEEEcCCcccHHHHH
Confidence 589999999999999999999987665311 110 12333333 456678899998654322 2
Q ss_pred -HHHHHHHHccEEEEeeC---CeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcC
Q 040742 370 -QALLEAMEQQCVSVAKA---GLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILL 436 (581)
Q Consensus 370 -~~L~~~me~~~i~i~k~---g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~ 436 (581)
..|..+|+...+++... -.....|+ ++.|+|-.-..-+ =-.-|.||. .+|-++
T Consensus 325 D~ylRNaLDGN~vsiD~KHkap~Qik~PP---LlITsN~dv~~~~----------~~~YLhSRi-~~f~F~ 381 (432)
T PF00519_consen 325 DTYLRNALDGNPVSIDCKHKAPVQIKCPP---LLITSNIDVKKDD----------RWKYLHSRI-TCFEFP 381 (432)
T ss_dssp HHHTHHHHCTSEEEEEESSSEEEEEE------EEEEESS-TTTSC----------CCHHHCTTE-EEEE--
T ss_pred HHHHHhccCCCeeeeeccCCCceEeecCc---eEEecCCCCCcch----------hhhhhhheE-EEEEcC
Confidence 25778888888888732 23344443 6788886421111 124777897 444443
No 283
>PRK13947 shikimate kinase; Provisional
Probab=96.26 E-value=0.0043 Score=57.64 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=25.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
||+|+|+||+|||++++.+|+.++..++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~i 30 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFI 30 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999999876654
No 284
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.24 E-value=0.0041 Score=58.26 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=29.3
Q ss_pred ccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 256 IYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 256 I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
++|.+...+.+.-.+-..... ..-+++++|++|+|||+|++.+...+.
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~-----------~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSG-----------SPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS----------------EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcC-----------CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578887777777666311100 012799999999999999998887653
No 285
>PRK04296 thymidine kinase; Provisional
Probab=96.18 E-value=0.015 Score=55.19 Aligned_cols=23 Identities=26% Similarity=0.122 Sum_probs=18.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-.+++||||+|||+++..++..+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
Confidence 47889999999998887766544
No 286
>PRK08118 topology modulation protein; Reviewed
Probab=96.15 E-value=0.0049 Score=57.24 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.|+++|+||+|||+||+.+++.++-.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~ 29 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPV 29 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 589999999999999999999876543
No 287
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.15 E-value=0.004 Score=55.32 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=24.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.|||+.|-||||||+++..+|...+-..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~ 35 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEY 35 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCce
Confidence 4999999999999999999998875443
No 288
>PRK14532 adenylate kinase; Provisional
Probab=96.15 E-value=0.0056 Score=57.90 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
+++++|+||+|||++++.+++..+..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~ 27 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMV 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 69999999999999999999987643
No 289
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.14 E-value=0.012 Score=56.16 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=43.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC---CCcEE-EecCCCccC------CceeEEEecCcccc-ceeccceeeecCceEEEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS---PRGIY-VCGNATTKA------GLTVAVVKDSVTND-YAFEAGAMVLADSGLCCI 359 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~---~~~~~-~~~~~~~~~------~l~~~~~~~~~~~~-~~~~~g~l~~a~~gil~i 359 (581)
..++.|+||||||++++.+.+.+ +..+. ++....... +..+..+....... .....+........+++|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 57788999999999999987665 33443 222211110 11111110000000 000000011334579999
Q ss_pred cCCCCCCHHHH-HHHHHHHc
Q 040742 360 DEFDKMSAEHQ-ALLEAMEQ 378 (581)
Q Consensus 360 DEi~~~~~~~~-~L~~~me~ 378 (581)
||...++...- .|+.....
T Consensus 100 DEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 100 DEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp SSGGG-BHHHHHHHHHHS-T
T ss_pred ecccccCHHHHHHHHHHHHh
Confidence 99999997654 67766543
No 290
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.13 E-value=0.0052 Score=55.87 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=24.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
+|+|+|+||+|||++++.+++.++..++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~ 28 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFV 28 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 4899999999999999999988765443
No 291
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.11 E-value=0.0056 Score=56.79 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=24.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
+++|+|+||+|||++++.+++.++..++
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~~~~~ 33 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLGYDFI 33 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999999865443
No 292
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.02 Score=56.50 Aligned_cols=119 Identities=13% Similarity=0.192 Sum_probs=66.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE--EEecCC--------CccCCceeE-EEecCcc----ccce--eccceeeecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI--YVCGNA--------TTKAGLTVA-VVKDSVT----NDYA--FEAGAMVLAD 353 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~--~~~~~~--------~~~~~l~~~-~~~~~~~----~~~~--~~~g~l~~a~ 353 (581)
..||+|++|+||..+|.++|+.+-..- ..+|.- .+-.++..- ....... .... +...+...+.
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~~ 88 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESNG 88 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcCC
Confidence 689999999999999999998762100 001110 011121110 0000000 0000 0000111123
Q ss_pred ceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCe-EEEEeeCCCCCCCCCccChhhhcCCChhhhccccE
Q 040742 354 SGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSART-SVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDL 431 (581)
Q Consensus 354 ~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~-~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdl 431 (581)
..|++|+++++|..... +|+..+|+- |.++ .++.|.|+.. +.+.++||+ .
T Consensus 89 ~KV~II~~ae~m~~~AaNaLLK~LEEP-------------p~~t~fiLit~~~~~--------------lLpTI~SRC-q 140 (261)
T PRK05818 89 KKIYIIYGIEKLNKQSANSLLKLIEEP-------------PKNTYGIFTTRNENN--------------ILNTILSRC-V 140 (261)
T ss_pred CEEEEeccHhhhCHHHHHHHHHhhcCC-------------CCCeEEEEEECChHh--------------CchHhhhhe-e
Confidence 47999999999998877 999999861 2333 3455555532 889999998 4
Q ss_pred eEEcCC
Q 040742 432 VFILLD 437 (581)
Q Consensus 432 i~~~~d 437 (581)
.+.++.
T Consensus 141 ~~~~~~ 146 (261)
T PRK05818 141 QYVVLS 146 (261)
T ss_pred eeecCC
Confidence 454444
No 293
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.06 E-value=0.014 Score=56.97 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.4
Q ss_pred eEEeCCCCChHHHHHHHHHHHC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~ 313 (581)
+++.|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4678999999999999999873
No 294
>PRK00625 shikimate kinase; Provisional
Probab=96.05 E-value=0.0064 Score=56.75 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
+|+|+|.||+|||++++.+++.+...++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~i 29 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFF 29 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999998865443
No 295
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.99 E-value=0.0016 Score=61.73 Aligned_cols=49 Identities=35% Similarity=0.561 Sum_probs=34.8
Q ss_pred cccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCC---CcEEEec
Q 040742 257 YGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSP---RGIYVCG 321 (581)
Q Consensus 257 ~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~---~~~~~~~ 321 (581)
||...+.+++-+.+..|. -+.++||+|+|||+|+|++..+-. ..+++.|
T Consensus 12 fg~~~VLkgi~l~v~~Ge----------------vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g 63 (240)
T COG1126 12 FGDKEVLKGISLSVEKGE----------------VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG 63 (240)
T ss_pred eCCeEEecCcceeEcCCC----------------EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC
Confidence 455555556655555553 689999999999999999987753 2444554
No 296
>PRK03839 putative kinase; Provisional
Probab=95.98 E-value=0.0069 Score=56.89 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.|+|+|+||+|||++++.+++.++..+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~ 28 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEY 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 589999999999999999999986544
No 297
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.96 E-value=0.0082 Score=55.31 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=23.7
Q ss_pred eEEeCCCCChHHHHHHHHHHHCCCcEEEec
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSPRGIYVCG 321 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~~~~~~~~ 321 (581)
++|+|+||+|||++++.+++.++ ..++++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-~~~v~~ 29 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-AKFIEG 29 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-CeEEeC
Confidence 47899999999999999999986 334444
No 298
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.0062 Score=57.11 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=22.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.++++|+||+||||+|+.|++.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999854
No 299
>PRK13949 shikimate kinase; Provisional
Probab=95.91 E-value=0.0083 Score=55.83 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=24.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
+|+|+|+||+|||++++.+++.+...+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~ 29 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSF 29 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 699999999999999999999986543
No 300
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=95.87 E-value=0.017 Score=70.73 Aligned_cols=149 Identities=19% Similarity=0.269 Sum_probs=88.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC-CcEEE-ecCCCccCCceeEEEec---C-ccccceeccceeeecCceEEEEcCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP-RGIYV-CGNATTKAGLTVAVVKD---S-VTNDYAFEAGAMVLADSGLCCIDEFDK 364 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~-~~~~~-~~~~~~~~~l~~~~~~~---~-~~~~~~~~~g~l~~a~~gil~iDEi~~ 364 (581)
.++++|++|+|||.++........ ..++. +....+...++...... . ..+.|. ++.. ..-++|+||++.
T Consensus 129 ~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~~~~~~~k~~~~~~~--~~~~---~~~~~f~ddinm 203 (1395)
T KOG3595|consen 129 PVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQEIIESKLDKRRSGNYG--PPLG---KKLVLFVDDINM 203 (1395)
T ss_pred eEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccHHHHHHHHHHHHHHhcccCCC--CCCC---ceeEEEEeccCC
Confidence 799999999999998887766543 33232 11111111111100000 0 011111 1111 123799999987
Q ss_pred CCHHH------H-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC-CCCCCCccChhhhcCCChhhhccccEeEEcC
Q 040742 365 MSAEH------Q-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV-GGHYNRAKTVNENLKMSAALLSRFDLVFILL 436 (581)
Q Consensus 365 ~~~~~------~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~-~g~~~~~~~~~~~~~l~~all~RFdli~~~~ 436 (581)
-..+. . .+.+.++.+.+.....+. ...-.++.+++|+||. .|+.+ +++-+.+.|-++. .
T Consensus 204 p~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~-~~~i~~i~~~~a~~~~~~gr~~----------i~~r~~r~f~~~~--~ 270 (1395)
T KOG3595|consen 204 PALDKYGDQPPIELLRQMLEHGGFYDRKKSE-WVEIENVQLVGAMNPPGGGRND----------ITERFLRHFLIVS--L 270 (1395)
T ss_pred chhhhcCCccHHHHHHHHHHhceeecccccc-eeEEeeeEEEeecCCCCCccCc----------ccHHHHHHeeeEe--e
Confidence 55441 2 556777776555443333 3333468899999975 66776 9999999995433 4
Q ss_pred CCCCHHHHHHHHHHHHhhccC
Q 040742 437 DKPDELLDKRVSEHIMSLHSG 457 (581)
Q Consensus 437 d~~~~~~d~~i~~~il~~~~~ 457 (581)
+.|+.+....|-.+++..|..
T Consensus 271 ~~~~~~sl~~if~~~~~~~~~ 291 (1395)
T KOG3595|consen 271 NYPSQESLTQIFNTILTGHLR 291 (1395)
T ss_pred CCCChhhHHHHHHHHHhcccC
Confidence 788888888888888877644
No 301
>PF13245 AAA_19: Part of AAA domain
Probab=95.82 E-value=0.014 Score=46.48 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=17.5
Q ss_pred eeEEeCCCCChHH-HHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKS-QLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT-~la~~la~~~ 313 (581)
-+++.|||||||| +++..++.+.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566999999999 5666666665
No 302
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.80 E-value=0.0068 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.6
Q ss_pred eEEeCCCCChHHHHHHHHHHHC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~ 313 (581)
|+|.|.||+|||++++.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999886
No 303
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.79 E-value=0.0097 Score=55.92 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.9
Q ss_pred eEEeCCCCChHHHHHHHHHHHCCC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
|+++|+||+|||++++.+++.++-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~ 25 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF 25 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 789999999999999999998753
No 304
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.79 E-value=0.0085 Score=46.68 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.4
Q ss_pred eEEeCCCCChHHHHHHHHHHHC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~ 313 (581)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999885
No 305
>PRK14530 adenylate kinase; Provisional
Probab=95.78 E-value=0.0097 Score=57.66 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
+|+++|+||+|||++++.+++.++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~ 30 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVE 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 79999999999999999999988643
No 306
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.78 E-value=0.017 Score=51.27 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=23.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.++|.|+.|+|||++++.+++.++.
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 6999999999999999999999864
No 307
>PRK07261 topology modulation protein; Provisional
Probab=95.77 E-value=0.0099 Score=55.43 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.++++|+||+|||+|++.+++.++
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 308
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.036 Score=56.89 Aligned_cols=153 Identities=19% Similarity=0.195 Sum_probs=89.8
Q ss_pred CCCCHHHHHHHHHHHhhcCchHHHHHHHhh--CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCC
Q 040742 223 FSFSPRDLEFIVKFSEESGSDIFRQIVQSI--CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGL 300 (581)
Q Consensus 223 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~s~--~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGt 300 (581)
...+.++++.=..... .+.+.+.|++++ -|..+.. ..|.-++.-|+.- ..++.|++=.||.+|
T Consensus 172 Pn~d~~el~~~R~~Ft--~deWidVLirsiGmePa~~e~-rtkwhll~Rlvpl------------VEnNyN~cElGPr~T 236 (683)
T COG4930 172 PNTDPKELEEGRGCFT--LDEWIDVLIRSIGMEPAVYEP-RTKWHLLARLVPL------------VENNYNMCELGPRQT 236 (683)
T ss_pred CCCCHHHHHhhhcccc--HHHHHHHHHHhcCCCccccCh-hhhHHHHHHHHHH------------hhCCcchhhcCCCcc
Confidence 3445555544333322 255777888886 4555543 2344444444433 233458999999999
Q ss_pred hHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC---HH-HHHHHHHH
Q 040742 301 GKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS---AE-HQALLEAM 376 (581)
Q Consensus 301 GKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~---~~-~~~L~~~m 376 (581)
|||++-+.+. |....++|...+.+.|...+. +-.+|.+-+ -.++.+||+..+. ++ .|.|-..|
T Consensus 237 GKshvYkevS---pn~~liSGGqttvAnLFYNma--------trqiGlvg~--wDvVaFDEVagirFkdkDg~qilKDYM 303 (683)
T COG4930 237 GKSHVYKEVS---PNVRLISGGQTTVANLFYNMA--------TRQIGLVGL--WDVVAFDEVAGIRFKDKDGMQILKDYM 303 (683)
T ss_pred CccceehccC---CceEEeeCCcccHHHHHHHHh--------hccccceee--eeeeeehhhccccccCccHHHHHHHHH
Confidence 9999876543 445557776665555432211 123344433 3578999998765 22 34788999
Q ss_pred HccEEEEeeCCeeEeeCCCeEEEEeeCCC
Q 040742 377 EQQCVSVAKAGLVASLSARTSVLAAANPV 405 (581)
Q Consensus 377 e~~~i~i~k~g~~~~~~~~~~viaa~Np~ 405 (581)
+.|.+..- ......++...+++-.|..
T Consensus 304 aSGsf~RG--~~~v~~~ASlVFvGNvnqs 330 (683)
T COG4930 304 ASGSFERG--DKKVVSDASLVFVGNVNQS 330 (683)
T ss_pred hcCCcccc--cccccccceEEEEeccccc
Confidence 99988764 2333445556666666643
No 309
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.68 E-value=0.01 Score=56.04 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=25.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEe
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVC 320 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~ 320 (581)
.++|+||+|+|||+|++.++...+..+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~ 33 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLVA 33 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEEc
Confidence 699999999999999999998876554443
No 310
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.67 E-value=0.014 Score=57.14 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=26.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEEEec
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCG 321 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~ 321 (581)
..++|+|+||+|||++++.+++.++......|
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 46999999999999999999998765443333
No 311
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.60 E-value=0.012 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=21.0
Q ss_pred eEEeCCCCChHHHHHHHHHHHCC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~ 314 (581)
++|+|+||+|||++++.+++.++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC
Confidence 68999999999999999999864
No 312
>PRK06762 hypothetical protein; Provisional
Probab=95.59 E-value=0.013 Score=54.11 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=23.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
-++++|+||+|||++++.+++.++..+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~~~ 30 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGT 30 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 588999999999999999999875444
No 313
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.57 E-value=0.012 Score=54.31 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=25.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
++.|+|.+|+|||++.+.+|+.++..++
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~ 31 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFI 31 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCcc
Confidence 7999999999999999999999987665
No 314
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.53 E-value=0.014 Score=56.69 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=16.4
Q ss_pred eEEeCCCCChHHHHHHHHHHHC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~ 313 (581)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999997666655543
No 315
>PRK06217 hypothetical protein; Validated
Probab=95.53 E-value=0.014 Score=54.96 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=23.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
+|+++|.||+|||++++.+++.++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~ 28 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP 28 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 69999999999999999999988644
No 316
>PRK14531 adenylate kinase; Provisional
Probab=95.52 E-value=0.015 Score=54.89 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.++++|+||+|||++++.+++..+-
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~ 28 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGL 28 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999998753
No 317
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.51 E-value=0.028 Score=59.18 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
++.+.|+.|||||++++++...+..
T Consensus 24 ~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 24 NFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred EEEEEcCCCCChhHHHHHHHHHhcc
Confidence 8999999999999999999888743
No 318
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.51 E-value=0.017 Score=52.54 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+++.||+|+|||+|++.+|.+.+.
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCC
Confidence 6999999999999999999988753
No 319
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.47 E-value=0.075 Score=53.69 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=40.4
Q ss_pred CceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCe-EEEEeeCCCCCCCCCccChhhhcCCChhhhcccc
Q 040742 353 DSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSART-SVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD 430 (581)
Q Consensus 353 ~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~-~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFd 430 (581)
...|++||+.++|+.... +|+..+|+- |.++ .|+.|.|+.. +.+.+.||+
T Consensus 104 ~~kV~II~~ad~m~~~AaNaLLKtLEEP-------------p~~t~~iL~t~~~~~--------------lLpTI~SRc- 155 (290)
T PRK07276 104 KQQVFIIKDADKMHVNAANSLLKVIEEP-------------QSEIYIFLLTNDENK--------------VLPTIKSRT- 155 (290)
T ss_pred CcEEEEeehhhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEECChhh--------------CchHHHHcc-
Confidence 457999999999998877 999999861 2223 4455556532 889999999
Q ss_pred EeEEcC
Q 040742 431 LVFILL 436 (581)
Q Consensus 431 li~~~~ 436 (581)
.++.++
T Consensus 156 q~i~f~ 161 (290)
T PRK07276 156 QIFHFP 161 (290)
T ss_pred eeeeCC
Confidence 445443
No 320
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.46 E-value=0.016 Score=54.12 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=24.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
+|+|+|++|+|||++++.+++.++..++
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l~~~~v 33 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEE
Confidence 7999999999999999999998765443
No 321
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.44 E-value=0.015 Score=54.99 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.9
Q ss_pred eEEeCCCCChHHHHHHHHHHHCCC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
|+++|+||+|||++++.+++.++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~ 25 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGL 25 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 899999999999999999998654
No 322
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.43 E-value=0.025 Score=53.43 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=23.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
+++++|++|+|||+++++++...+.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCC
Confidence 7999999999999999999988763
No 323
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.36 E-value=0.014 Score=54.96 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-++++|+||+|||++++.+++.++-
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~ 29 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGF 29 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999987653
No 324
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.35 E-value=0.011 Score=60.44 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+++|+|+||||||+|+.++++.+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999887
No 325
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.34 E-value=0.007 Score=63.39 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-+++.|.||||||.||-.+++.+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 58889999999999999999887
No 326
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.34 E-value=0.037 Score=63.65 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=45.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC---CCcEEEe-cCCCcc------CCceeEEEecCccccc--eeccceeeecCceEEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS---PRGIYVC-GNATTK------AGLTVAVVKDSVTNDY--AFEAGAMVLADSGLCC 358 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~---~~~~~~~-~~~~~~------~~l~~~~~~~~~~~~~--~~~~g~l~~a~~gil~ 358 (581)
-++|.|+||||||++++++...+ +..+... ..+... .+..+..+ ..+ .+..+...+....+++
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti-----~~~~~~~~~~~~~~~~~~llI 444 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTL-----ASLEYAWANGRDLLSDKDVLV 444 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeH-----HHHHhhhccCcccCCCCcEEE
Confidence 57899999999999999997664 3333322 111100 11111100 011 1122222334578999
Q ss_pred EcCCCCCCHHHH-HHHHHH
Q 040742 359 IDEFDKMSAEHQ-ALLEAM 376 (581)
Q Consensus 359 iDEi~~~~~~~~-~L~~~m 376 (581)
|||+..++.... .|+...
T Consensus 445 vDEasMv~~~~~~~Ll~~~ 463 (744)
T TIGR02768 445 IDEAGMVGSRQMARVLKEA 463 (744)
T ss_pred EECcccCCHHHHHHHHHHH
Confidence 999999997654 666543
No 327
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.33 E-value=0.084 Score=51.47 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=34.2
Q ss_pred CCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 521 FPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 521 ~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
.|.+++++...|... .+ + .+|....+..+|.--|...+++.|++..+
T Consensus 220 ~~l~~~~a~~~i~~~---sq---------g-~P~lin~~~~~Al~~a~~a~~~~v~~a~~ 266 (269)
T COG3267 220 EPLFSDDALLLIHEA---SQ---------G-IPRLINNLATLALDAAYSAGEDGVSEAEI 266 (269)
T ss_pred cccCChhHHHHHHHH---hc---------c-chHHHHHHHHHHHHHHHHcCCCccchhhc
Confidence 456788888777652 11 1 57888888888888888888888887543
No 328
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.32 E-value=0.056 Score=60.23 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=18.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
..++.|+||||||+++..+...
T Consensus 162 ~~vitGgpGTGKTt~v~~ll~~ 183 (586)
T TIGR01447 162 FSLITGGPGTGKTTTVARLLLA 183 (586)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999988777654
No 329
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.28 E-value=0.015 Score=54.36 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
.++|.|+||+|||++++.+++.++..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~ 29 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEP 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 59999999999999999999987653
No 330
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.24 E-value=0.013 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=19.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+++++|+||+|||++++.+++..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999875
No 331
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.21 E-value=0.037 Score=63.43 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=20.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+++.|+||||||++++++.+.+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999997765
No 332
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.19 E-value=0.027 Score=58.26 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=23.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
++|++|++|+|||++++++....|.
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCC
Confidence 8999999999999999999999875
No 333
>PRK14526 adenylate kinase; Provisional
Probab=95.19 E-value=0.021 Score=55.14 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
+++|+|+||+|||++++.+++.++..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~ 27 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYY 27 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 58999999999999999999876543
No 334
>PRK14528 adenylate kinase; Provisional
Probab=95.14 E-value=0.022 Score=53.83 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
++++.|+||+|||++++.+++.++...
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~ 29 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQ 29 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 699999999999999999998875433
No 335
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.11 E-value=0.023 Score=58.04 Aligned_cols=31 Identities=35% Similarity=0.531 Sum_probs=25.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEec
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCG 321 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~ 321 (581)
.++++|+||+|||++++.+++.++...+++.
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 5888999999999999999998854455543
No 336
>PRK13946 shikimate kinase; Provisional
Probab=95.09 E-value=0.025 Score=53.40 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=25.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
-+|+|+|.||+|||++++.+++.++..++
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~i 39 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFL 39 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeE
Confidence 38999999999999999999999866554
No 337
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.07 E-value=0.023 Score=50.98 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=23.2
Q ss_pred eEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
|.+.|+||+|||++++.+++.++-.++
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~ 28 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYL 28 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 689999999999999999998765443
No 338
>PRK13948 shikimate kinase; Provisional
Probab=95.06 E-value=0.026 Score=53.16 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=25.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
+|+|+|.+|+|||++++.+++.++..+.
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~lg~~~i 39 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRALMLHFI 39 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 8999999999999999999998876554
No 339
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.03 E-value=0.019 Score=53.72 Aligned_cols=24 Identities=42% Similarity=0.506 Sum_probs=21.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-++++|+||+|||++++.++..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998864
No 340
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.03 E-value=0.024 Score=52.61 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=24.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
+++|+|.||+|||++++.+++.++..++
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~ 31 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFV 31 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 6899999999999999999998866543
No 341
>PRK02496 adk adenylate kinase; Provisional
Probab=95.03 E-value=0.024 Score=53.41 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
.++++|+||+|||++++.+++.++..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~ 28 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIP 28 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 58999999999999999999887543
No 342
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.00 E-value=0.025 Score=42.84 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
..+|.|++|+|||+|+.++.-.+-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 599999999999999999987763
No 343
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.95 E-value=0.025 Score=54.58 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.8
Q ss_pred eEEeCCCCChHHHHHHHHHHHCCC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
|+++|+||+|||++++.+++..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~ 25 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGL 25 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 789999999999999999987754
No 344
>PLN02200 adenylate kinase family protein
Probab=94.92 E-value=0.038 Score=54.26 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
..++++|+||+|||++++.+++.++-
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~ 69 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGF 69 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999998754
No 345
>PRK08233 hypothetical protein; Provisional
Probab=94.90 E-value=0.022 Score=53.27 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-|.+.|+||+|||++++.+++.++.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC
Confidence 5778899999999999999998863
No 346
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.86 E-value=0.032 Score=54.11 Aligned_cols=44 Identities=25% Similarity=0.349 Sum_probs=31.7
Q ss_pred cccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 257 YGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 257 ~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
+|.+...+.|...+.++.. .+++++||.|+|||+|++.+.....
T Consensus 2 ~gR~~el~~l~~~l~~~~~--------------~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 2 FGREKELEKLKELLESGPS--------------QHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp -S-HHHHHHHHHCHHH--S--------------SEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHhhcC--------------cEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 5666666666655554421 2899999999999999999999884
No 347
>PRK14709 hypothetical protein; Provisional
Probab=94.85 E-value=0.39 Score=52.17 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=65.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEH 369 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~ 369 (581)
.-++|+|+-|.|||++++.+..+++... ++. +...++... . +.. ......+...-+++.+|.+.-..-.
T Consensus 206 ~~~~l~G~G~NGKSt~~~~i~~llG~~~-~~~---~~~~~~~~~-~----~~~--~~~lA~L~Gkrlv~~~E~~~g~~~~ 274 (469)
T PRK14709 206 ALVFVFGGGGNGKSVFLNVLAGILGDYA-TTA---AMDTFTASK-H----DRH--PTDLAMLRGARLVTASETEEGRAWA 274 (469)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhhhc-ccC---CHHHHhhcc-c----cCC--chhhHhhcCCeEEEeecCCcccccC
Confidence 3588889999999999999999987521 111 111111110 0 000 0111122334567788987533212
Q ss_pred HHHHHHHHc-cEEEEee-CCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcC
Q 040742 370 QALLEAMEQ-QCVSVAK-AGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILL 436 (581)
Q Consensus 370 ~~L~~~me~-~~i~i~k-~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~ 436 (581)
.+++..|-. -.++... ..........+.++.++|-.....+ -+.++.+|+ +++-+.
T Consensus 275 ~~~iK~ltGGD~i~ar~~~k~~f~f~p~~kl~~~~N~~P~~~d----------~d~g~~RR~-~iIPF~ 332 (469)
T PRK14709 275 EARIKQMTGGDTITARFMRQDFFEFVPQFKLTIVGNHKPRLRN----------VDEAARRRF-NIVPFT 332 (469)
T ss_pred HHHHHhhhCCCcEEeecccCCceEEEeeeEEEEEcCCCCccCC----------CCceeEeeE-EEEecC
Confidence 234444433 3344431 1223344456777888886532222 567899998 555543
No 348
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.80 E-value=0.033 Score=53.98 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.|+++|+||+|||++++.+++.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~ 28 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPH 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 589999999999999999998876433
No 349
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=94.80 E-value=0.017 Score=55.97 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=19.1
Q ss_pred eeeEEeCCCCChHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAA 310 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la 310 (581)
..+|++|+||+|||++|++++
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC
Confidence 479999999999999999885
No 350
>PRK05439 pantothenate kinase; Provisional
Probab=94.75 E-value=0.052 Score=55.36 Aligned_cols=82 Identities=12% Similarity=0.201 Sum_probs=46.9
Q ss_pred cCCCCHHHHHHHHHHHhhcC----chHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCC
Q 040742 222 LFSFSPRDLEFIVKFSEESG----SDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGD 297 (581)
Q Consensus 222 ~~~~~~~~~~~i~~~~~~~~----~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~ 297 (581)
...+|++|++.+..+....+ .++|--|++-+.-..-+...... ++..+++... .+...-|.+.|+
T Consensus 26 ~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~-~~~~fl~~~~----------~~~~~iIgIaG~ 94 (311)
T PRK05439 26 PLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQA-ALEQFLGKNG----------QKVPFIIGIAGS 94 (311)
T ss_pred CCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHhcccC----------CCCCEEEEEECC
Confidence 35688888887766542111 34454455544443333333322 2223333110 111246889999
Q ss_pred CCChHHHHHHHHHHHCC
Q 040742 298 PGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 298 pGtGKT~la~~la~~~~ 314 (581)
||+|||++++.++..+.
T Consensus 95 ~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 95 VAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998764
No 351
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.75 E-value=0.027 Score=48.53 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=20.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.|+++|++|+|||+|++.++....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 389999999999999999997643
No 352
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.68 E-value=0.0075 Score=59.49 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=27.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---cEEEecCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---GIYVCGNA 323 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~~~~~~~~ 323 (581)
.+.++||.|+|||+|+|+++.+++. .++..|..
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~ 65 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKD 65 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCc
Confidence 6889999999999999999998853 35566653
No 353
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.67 E-value=0.026 Score=51.95 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=18.1
Q ss_pred eEEeCCCCChHHHHHHHHHHH
Q 040742 292 VIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~ 312 (581)
|.|+|.||||||+|++.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999988
No 354
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.64 E-value=0.046 Score=56.71 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=23.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
++|+.|++|+|||+++++++...+.
T Consensus 164 nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcccCC
Confidence 8999999999999999999998875
No 355
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.60 E-value=0.034 Score=50.31 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=26.2
Q ss_pred eEEeCCCCChHHHHHHHHHHHCCCcEEEecC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSPRGIYVCGN 322 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~~~~~~~~~ 322 (581)
|-+-|+||+|||++++.+|+.++-.++.+|.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~ 33 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAGT 33 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeeccH
Confidence 6678999999999999999998877665554
No 356
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.59 E-value=0.058 Score=52.54 Aligned_cols=32 Identities=31% Similarity=0.516 Sum_probs=25.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---cEEEecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---GIYVCGN 322 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~~~~~~~ 322 (581)
-+.++||+|||||||++.+|.+... .+.+.|.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~ 65 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGR 65 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc
Confidence 5899999999999999999988743 3444444
No 357
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.55 E-value=0.028 Score=57.71 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=27.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC---CcEEEecCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP---RGIYVCGNAT 324 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~---~~~~~~~~~~ 324 (581)
-+.|+||+||||||++|.||.+.. ..+++.|...
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~v 67 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDV 67 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 588999999999999999998864 3555665544
No 358
>PRK14527 adenylate kinase; Provisional
Probab=94.54 E-value=0.03 Score=53.11 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-++++|+||+|||++++.+++..+
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999998764
No 359
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.54 E-value=0.027 Score=52.74 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=22.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-++|+||+|+|||+|++.+++..+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 5899999999999999999997754
No 360
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.54 E-value=0.061 Score=54.40 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.-+-+.|++|+|||++++.+..++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999988764
No 361
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.54 E-value=0.023 Score=53.48 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=23.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
=++|.|+||+|||++++.+++.+....
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 388999999999999999999986544
No 362
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.53 E-value=0.12 Score=53.96 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=22.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+++.||+|+|||++++++...++
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 799999999999999999988664
No 363
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.53 E-value=0.032 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.3
Q ss_pred eEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
++|+||+|+|||+|++.+++..+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6789999999999999999987654
No 364
>PRK10536 hypothetical protein; Provisional
Probab=94.45 E-value=0.055 Score=53.37 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+++.|++|||||+|+.+++..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998873
No 365
>PRK06547 hypothetical protein; Provisional
Probab=94.44 E-value=0.073 Score=49.62 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.|++.|++|+|||++++.+++.++
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 677889999999999999998754
No 366
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=94.43 E-value=0.23 Score=53.99 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=69.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ 370 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~ 370 (581)
-++|+|+-|+|||++...+..++++.-.++....... . ..+ ..+. ...+-...++..||.++-.-+..
T Consensus 232 ~~~l~G~G~nGKstf~~li~~llG~~n~~s~~~~~~~---~-~~~----~~~~----~A~Lvg~~~v~~~E~~kg~l~~~ 299 (517)
T COG3378 232 LFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTDLE---A-DDR----HPFG----LAALVGKRLVTVSETEKGRLDDE 299 (517)
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccchhccccHHHhh---h-hcc----Ccch----HHHhhCceEEEecCccccccccc
Confidence 6899999999999999999999987443333222111 0 000 0110 01111234555666655221111
Q ss_pred -HHHHHHHccEEEEeeCC-eeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCC-CCCHHHHHHH
Q 040742 371 -ALLEAMEQQCVSVAKAG-LVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLD-KPDELLDKRV 447 (581)
Q Consensus 371 -~L~~~me~~~i~i~k~g-~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d-~~~~~~d~~i 447 (581)
.+..+.-.-.+++..-+ ..........++.++|-.....+ -+.++.+|+ +++.++. .+..+.|..+
T Consensus 300 ~~lK~ltgGD~i~a~~K~kd~~~f~p~a~~i~~~N~~P~~~~----------~d~ai~rR~-~ivpF~~~f~~~~~d~~l 368 (517)
T COG3378 300 GKLKALTGGDVISAERKRKDFFSFTPNAKLIQATNHPPRIRG----------DDEAIWRRL-LIVPFEKQFPPAERDDKL 368 (517)
T ss_pred cceeeeccCCeeeehhccCCceEeccceeEEeecCCCCcccc----------cchhhhhee-EEEeccccCCCcccchhh
Confidence 12222212223332111 22344455778888886533332 578999999 6676665 4444443444
No 367
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.37 E-value=0.023 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-.-|+||+|||||+++|.+-+..
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhc
Confidence 57889999999999999998764
No 368
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.37 E-value=0.03 Score=50.87 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.7
Q ss_pred eEEeCCCCChHHHHHHHHHHHC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~ 313 (581)
++++|.||+|||++++.++..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 369
>PRK14529 adenylate kinase; Provisional
Probab=94.37 E-value=0.034 Score=54.01 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=22.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
+++|+|+||+|||++++.+++.+.-
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 6899999999999999999998754
No 370
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.2 Score=50.72 Aligned_cols=138 Identities=24% Similarity=0.336 Sum_probs=83.1
Q ss_pred CceEEEEcCCCCCCHH------------HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhc
Q 040742 353 DSGLCCIDEFDKMSAE------------HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENL 419 (581)
Q Consensus 353 ~~gil~iDEi~~~~~~------------~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~ 419 (581)
+.||+||||||++... .| -|+-.+|..+++. |-|...+ ..+.+||+.- |. +....
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~T-KyG~VkT--dHILFIasGA-----Fh----~sKPS 317 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVST-KYGPVKT--DHILFIASGA-----FH----VAKPS 317 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeec-ccccccc--ceEEEEecCc-----ee----cCChh
Confidence 5799999999986422 34 5666666555543 2232221 1245566532 21 11112
Q ss_pred CCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCC
Q 040742 420 KMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDG 499 (581)
Q Consensus 420 ~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (581)
+|-|.|--||++-+-+.....++..+.+ ..
T Consensus 318 DLiPELQGRfPIRVEL~~Lt~~Df~rIL-----te--------------------------------------------- 347 (444)
T COG1220 318 DLIPELQGRFPIRVELDALTKEDFERIL-----TE--------------------------------------------- 347 (444)
T ss_pred hcChhhcCCCceEEEcccCCHHHHHHHH-----cC---------------------------------------------
Confidence 3778999999887776554444433332 10
Q ss_pred CCCCCCHHHHHHHHHHHH-hcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHH
Q 040742 500 DFHPLPAPLLRKYIAYAR-TFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVR 561 (581)
Q Consensus 500 ~~~~i~~~~lk~yi~~ar-~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslir 561 (581)
-...++++|.++-+ ..+.-.|+++|.+.|.+....+-.. .-.+.+|.|..++.
T Consensus 348 ----p~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~-----~ENIGARRLhTvlE 401 (444)
T COG1220 348 ----PKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEK-----TENIGARRLHTVLE 401 (444)
T ss_pred ----cchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhccc-----ccchhHHHHHHHHH
Confidence 11345899987654 3344568999999999987776432 34678888877664
No 371
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.33 E-value=0.035 Score=53.21 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=22.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-++|+||+|+|||+|++.++...+
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 699999999999999999999886
No 372
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.32 E-value=0.11 Score=53.25 Aligned_cols=29 Identities=28% Similarity=0.221 Sum_probs=26.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
.+|.|+|.||+|||++++.+++.++..++
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~Lg~~~i 162 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARLGVPFV 162 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 38999999999999999999999877655
No 373
>PLN02459 probable adenylate kinase
Probab=94.30 E-value=0.048 Score=54.07 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=23.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+++|+|+||+|||++++.+++..+-
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~ 55 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGV 55 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998754
No 374
>PRK13764 ATPase; Provisional
Probab=94.30 E-value=0.033 Score=61.77 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=22.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
++|++|+||+|||+++++++..++
T Consensus 259 ~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999999999998875
No 375
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.29 E-value=0.029 Score=55.64 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.1
Q ss_pred eEEeCCCCChHHHHHHHHHHHCC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~ 314 (581)
|+|+|.||+|||++|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998763
No 376
>PRK04040 adenylate kinase; Provisional
Probab=94.24 E-value=0.035 Score=52.59 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=22.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.++++|.||+|||++++.+++.++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999885
No 377
>PLN02674 adenylate kinase
Probab=94.20 E-value=0.048 Score=53.67 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=23.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
+++|+|+||+||+++++.+++..+-
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~~~ 57 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEYCL 57 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC
Confidence 7999999999999999999998753
No 378
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.19 E-value=0.051 Score=51.84 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=25.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEe
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVC 320 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~ 320 (581)
-+++.|.||+|||++++.++..++......
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~~~~~~~~ 34 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHRAIDIVLS 34 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeEEeh
Confidence 689999999999999999999876544333
No 379
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.12 E-value=0.068 Score=54.83 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=23.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
+++++|++|+|||++++++....+.
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCc
Confidence 8999999999999999999988864
No 380
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.10 E-value=0.22 Score=58.92 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=48.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC---CCcEEEecC-CC------ccCCceeEEEecCccccc--eeccceeeecCceEEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS---PRGIYVCGN-AT------TKAGLTVAVVKDSVTNDY--AFEAGAMVLADSGLCC 358 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~---~~~~~~~~~-~~------~~~~l~~~~~~~~~~~~~--~~~~g~l~~a~~gil~ 358 (581)
-.++.|++|||||++++.+.+.. +..+..... +. ...|+.+..+ ..| .+..|...+..+.+++
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TI-----as~ll~~~~~~~~l~~~~vlV 473 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTL-----SSWELRWNQGRDQLDNKTVFV 473 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeH-----HHHHhhhccCccCCCCCcEEE
Confidence 58999999999999999998764 333432111 11 0112211111 111 1122333444567999
Q ss_pred EcCCCCCCHHHH-HHHHHHH
Q 040742 359 IDEFDKMSAEHQ-ALLEAME 377 (581)
Q Consensus 359 iDEi~~~~~~~~-~L~~~me 377 (581)
|||...++...- .|+...+
T Consensus 474 IDEAsMv~~~~m~~Ll~~~~ 493 (1102)
T PRK13826 474 LDEAGMVASRQMALFVEAVT 493 (1102)
T ss_pred EECcccCCHHHHHHHHHHHH
Confidence 999999987655 7777665
No 381
>PRK01184 hypothetical protein; Provisional
Probab=94.07 E-value=0.054 Score=50.95 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=20.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
-|+|+|+||+|||++++ +++..+..+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~ 28 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPV 28 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcE
Confidence 58999999999999998 555555433
No 382
>PRK04182 cytidylate kinase; Provisional
Probab=94.06 E-value=0.055 Score=50.38 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=24.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
.|++.|.||+|||++++.+++.++..++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~i 29 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHV 29 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEe
Confidence 4899999999999999999998765443
No 383
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.04 E-value=0.045 Score=52.28 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-++++||+|+|||+++++++...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 699999999999999999887775
No 384
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.02 E-value=0.038 Score=51.59 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.5
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
..++|+|+||+|||++++.+++.+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999998774
No 385
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.01 E-value=0.081 Score=53.96 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=22.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
+++++|++|+|||++++++...++
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh
Confidence 899999999999999999998874
No 386
>PF13479 AAA_24: AAA domain
Probab=94.01 E-value=0.048 Score=52.78 Aligned_cols=27 Identities=30% Similarity=0.751 Sum_probs=22.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEEEe
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIYVC 320 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~~~ 320 (581)
+.++++|+||+|||+++..+ ++.+++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id 30 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFID 30 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEE
Confidence 58999999999999998877 7766654
No 387
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.023 Score=60.34 Aligned_cols=131 Identities=16% Similarity=0.212 Sum_probs=68.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCH-
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSA- 367 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~- 367 (581)
..+||.||||+|||.||-.+|..+.-.+. +.... ...|+..+..-....+.|. . ...+.-.++++|+++++-+
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe-~miG~sEsaKc~~i~k~F~--D--AYkS~lsiivvDdiErLiD~ 613 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPE-DMIGLSESAKCAHIKKIFE--D--AYKSPLSIIVVDDIERLLDY 613 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChH-HccCccHHHHHHHHHHHHH--H--hhcCcceEEEEcchhhhhcc
Confidence 57999999999999999999988765443 22211 1122221110000001110 0 0112236899999988542
Q ss_pred -----HH-----HHHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCC
Q 040742 368 -----EH-----QALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLD 437 (581)
Q Consensus 368 -----~~-----~~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d 437 (581)
.- |+|+-++..+- +.-.+..|++|+... .+-+. =.+++-|+-.+.+|.
T Consensus 614 vpIGPRfSN~vlQaL~VllK~~p----------pkg~kLli~~TTS~~--------~vL~~----m~i~~~F~~~i~Vpn 671 (744)
T KOG0741|consen 614 VPIGPRFSNLVLQALLVLLKKQP----------PKGRKLLIFGTTSRR--------EVLQE----MGILDCFSSTIHVPN 671 (744)
T ss_pred cccCchhhHHHHHHHHHHhccCC----------CCCceEEEEecccHH--------HHHHH----cCHHHhhhheeecCc
Confidence 21 23333332110 111256778887753 11111 145677877777777
Q ss_pred CCCHHHHHHH
Q 040742 438 KPDELLDKRV 447 (581)
Q Consensus 438 ~~~~~~d~~i 447 (581)
....+....+
T Consensus 672 l~~~~~~~~v 681 (744)
T KOG0741|consen 672 LTTGEQLLEV 681 (744)
T ss_pred cCchHHHHHH
Confidence 6665554443
No 388
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.97 E-value=0.046 Score=50.10 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=19.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+++.|.||||||++++.++.+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLREL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHHh
Confidence 5899999999999999999933
No 389
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=93.93 E-value=0.079 Score=62.15 Aligned_cols=86 Identities=21% Similarity=0.189 Sum_probs=45.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC---CCcEEEecC-CCccCCceeEEEecCcc-ccc--eeccceeeecCceEEEEcCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS---PRGIYVCGN-ATTKAGLTVAVVKDSVT-NDY--AFEAGAMVLADSGLCCIDEFD 363 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~---~~~~~~~~~-~~~~~~l~~~~~~~~~~-~~~--~~~~g~l~~a~~gil~iDEi~ 363 (581)
.+++.|.||||||++++.+.+.. +..+..... +.....|....-....+ ..+ .+..|...+....+++|||..
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 47799999999999999877654 333432211 11011110000000000 011 011233334456799999999
Q ss_pred CCCHHHH-HHHHHH
Q 040742 364 KMSAEHQ-ALLEAM 376 (581)
Q Consensus 364 ~~~~~~~-~L~~~m 376 (581)
.++...- .|+...
T Consensus 444 Mv~~~~m~~LL~~a 457 (988)
T PRK13889 444 MVGTRQLERVLSHA 457 (988)
T ss_pred cCCHHHHHHHHHhh
Confidence 9987654 666544
No 390
>PTZ00301 uridine kinase; Provisional
Probab=93.92 E-value=0.25 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-|.+.|+||+|||+||+.+++.+
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHH
Confidence 47788999999999999998654
No 391
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.90 E-value=0.046 Score=52.60 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=22.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-+.++|++|+|||+|+++++..++
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999999876
No 392
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.90 E-value=0.061 Score=54.04 Aligned_cols=87 Identities=18% Similarity=0.317 Sum_probs=45.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc---EE-EecCCC-ccCCc-eeEEEecCccccceecc--ceeeecCceEEEEcCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG---IY-VCGNAT-TKAGL-TVAVVKDSVTNDYAFEA--GAMVLADSGLCCIDEF 362 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~---~~-~~~~~~-~~~~l-~~~~~~~~~~~~~~~~~--g~l~~a~~gil~iDEi 362 (581)
++++.|++|+|||++++++....+.. +. +..... ...+. ....... .+...+.. ......+..+++++|+
T Consensus 129 ~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~--~~~~~~~~~l~~~LR~~pD~iiigEi 206 (270)
T PF00437_consen 129 NILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTR--RDEISYEDLLKSALRQDPDVIIIGEI 206 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEE--TTTBSHHHHHHHHTTS--SEEEESCE
T ss_pred EEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEee--cCcccHHHHHHHHhcCCCCccccccc
Confidence 89999999999999999999998765 22 221110 00111 0111111 01111111 1122335679999999
Q ss_pred CCCCHHHHHHHHHHHccEE
Q 040742 363 DKMSAEHQALLEAMEQQCV 381 (581)
Q Consensus 363 ~~~~~~~~~L~~~me~~~i 381 (581)
... +...+++++..|..
T Consensus 207 R~~--e~~~~~~a~~tGh~ 223 (270)
T PF00437_consen 207 RDP--EAAEAIQAANTGHL 223 (270)
T ss_dssp -SC--HHHHHHHHHHTT-E
T ss_pred CCH--hHHHHHHhhccCCc
Confidence 754 33333778877653
No 393
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.89 E-value=0.047 Score=52.06 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=20.6
Q ss_pred eEEeCCCCChHHHHHHHHHHHC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~ 313 (581)
+.+.|++|+|||+|+++++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 394
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.86 E-value=0.063 Score=45.62 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=18.7
Q ss_pred eeEEeCCCCChHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAA 310 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la 310 (581)
.++|+||+|+|||+|++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 68999999999999999986
No 395
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=93.84 E-value=0.064 Score=49.51 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=23.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
-|.+.|++|+|||++++.+++.++..++
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~ 29 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLI 29 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 4889999999999999999998765443
No 396
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.80 E-value=0.32 Score=48.71 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+++.|++|+|||++++++....+
T Consensus 82 lilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhC
Confidence 699999999999999998876664
No 397
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.77 E-value=0.06 Score=51.81 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
..|.+.|++|+|||+|++.+++.++
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999999873
No 398
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.72 E-value=0.057 Score=50.57 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=22.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.++|++|+|||++++.++..+..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5899999999999999999998754
No 399
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.72 E-value=0.05 Score=46.85 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=19.4
Q ss_pred eeEEeCCCCChHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~ 311 (581)
.|+++|.||+|||+|++++..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999995
No 400
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.70 E-value=0.019 Score=59.25 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=25.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC---CcEEEecCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP---RGIYVCGNAT 324 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~---~~~~~~~~~~ 324 (581)
-+.|.||+||||||++|.||..-. ..+++.|...
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i 69 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDI 69 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 367999999999999999998763 2345555443
No 401
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=93.65 E-value=0.025 Score=58.24 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+|+-|||||+|+-.....++.
T Consensus 116 GlYlYG~VGcGKTmLMDlFy~~~~~ 140 (467)
T KOG2383|consen 116 GLYLYGSVGCGKTMLMDLFYDALPP 140 (467)
T ss_pred eEEEecccCcchhHHHHHHhhcCCc
Confidence 5999999999999999988866654
No 402
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.64 E-value=0.038 Score=50.16 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.2
Q ss_pred EeCCCCChHHHHHHHHHHHCC
Q 040742 294 VVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 294 L~G~pGtGKT~la~~la~~~~ 314 (581)
++||||+|||++++.+++..+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 579999999999999999864
No 403
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.62 E-value=0.089 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.8
Q ss_pred eEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
|.+.|.||+|||++++.+++.++..
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~ 26 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNC 26 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC
Confidence 5678999999999999999987543
No 404
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.57 E-value=0.052 Score=50.63 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-+.|+|.||+|||++++.++..+.
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998863
No 405
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.56 E-value=0.12 Score=57.53 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=37.3
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-|..+....|-+ +|..++....+ ....|+|+|.||+|||++++.+++.+..
T Consensus 368 pP~~f~rpeV~~-iL~~~~~~r~~-----------~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 368 IPEWFSFPEVVA-ELRRTYPPRHK-----------QGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CChhhcHHHHHH-HHHHHhccccC-----------CCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 477777777666 66566544321 1137999999999999999999998753
No 406
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.54 E-value=0.11 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
|+|+.|++|+|||++++++....
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999876
No 407
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.52 E-value=0.41 Score=49.28 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
--++|+||+|+|||+++..+|..+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 368899999999999999998775
No 408
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.51 E-value=0.19 Score=50.82 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=26.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEEEe
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIYVC 320 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~~~ 320 (581)
..+++.|++|+|||++|..+|+.++....++
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~~~vi~ 123 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIRSVIG 123 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 4799999999999999999999987653333
No 409
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.50 E-value=0.077 Score=53.83 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=39.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEH 369 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~ 369 (581)
-+-|+|++++|||++++.++...+... ++..+.. . ..-.++ +.....+...++|||+..+.+..
T Consensus 195 ~~hl~G~Ss~GKTt~~~~a~Sv~G~p~----------~l~~sw~--~--T~n~le-~~a~~~nd~~l~lDE~~~~~~~~ 258 (286)
T PF06048_consen 195 GFHLYGQSSSGKTTALQLAASVWGNPD----------GLIRSWN--S--TDNGLE-RTAAAHNDLPLVLDELSQADPKD 258 (286)
T ss_pred EEEEEeCCCCCHHHHHHHhhhhCcCch----------hhhhcch--h--hHHHHH-HHHHHcCCcceEehhccccchhH
Confidence 677999999999999999987764422 1221111 0 000011 11222346789999999988653
No 410
>PLN02199 shikimate kinase
Probab=93.49 E-value=0.13 Score=51.81 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=25.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
+|+|+|.+|+|||++++.+++.++..+.
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~fI 131 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVLGYTFF 131 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 8999999999999999999998866554
No 411
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.49 E-value=0.063 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-++|+||+|+|||+|++.+.+..|.
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCc
Confidence 5999999999999999999987664
No 412
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.47 E-value=0.17 Score=53.84 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=46.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc-EEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG-IYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEH 369 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~ 369 (581)
-+++.||.++|||++++.+.+..... +|+............ .+. ...+....+. ....+|+||+...+.=.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l---~d~-~~~~~~~~~~----~~~yifLDEIq~v~~W~ 110 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL---LDL-LRAYIELKER----EKSYIFLDEIQNVPDWE 110 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH---HHH-HHHHHHhhcc----CCceEEEecccCchhHH
Confidence 58999999999999999999988764 554433321111110 000 0011111111 45689999999988643
Q ss_pred HHHHHHHHc
Q 040742 370 QALLEAMEQ 378 (581)
Q Consensus 370 ~~L~~~me~ 378 (581)
..+-...+.
T Consensus 111 ~~lk~l~d~ 119 (398)
T COG1373 111 RALKYLYDR 119 (398)
T ss_pred HHHHHHHcc
Confidence 345444443
No 413
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.47 E-value=0.097 Score=47.98 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-++|+|++|+|||+|+.++....
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 69999999999999999988653
No 414
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.45 E-value=0.059 Score=50.58 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=17.9
Q ss_pred eEEeCCCCChHHHHHHHHHHH
Q 040742 292 VIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~ 312 (581)
+|+.||||||||+|+..++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999998876543
No 415
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.33 E-value=0.094 Score=49.09 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=21.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-+.+.||+|||||+|+..+|....
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~ 56 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVT 56 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcC
Confidence 688899999999999999998764
No 416
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.32 E-value=0.046 Score=48.51 Aligned_cols=23 Identities=48% Similarity=0.605 Sum_probs=21.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+.++|++|+|||+|++.++...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 79999999999999999988765
No 417
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=93.30 E-value=0.072 Score=49.05 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+++++|+||+|||+|++++.+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998744
No 418
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.26 E-value=0.2 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
-.++|+||+|+|||+++..++..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999865
No 419
>COG1485 Predicted ATPase [General function prediction only]
Probab=93.20 E-value=0.031 Score=56.92 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=23.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+|+-|.|||+|+-.....+|.
T Consensus 67 GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 67 GLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred eEEEECCCCccHHHHHHHHHhhCCc
Confidence 4999999999999999999999875
No 420
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=93.17 E-value=0.16 Score=46.31 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=45.1
Q ss_pred eCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceec-cceeeecCceEEEEcCCCCCCHHHHHHH
Q 040742 295 VGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFE-AGAMVLADSGLCCIDEFDKMSAEHQALL 373 (581)
Q Consensus 295 ~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~l~~a~~gil~iDEi~~~~~~~~~L~ 373 (581)
++.+|||||+++.++++++|..-.+..... ++. . ...+.-. -..+...+..+++.|-=|....+.+.|+
T Consensus 5 IAtiGCGKTTva~aL~~LFg~wgHvQnDnI-----~~k-~----~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR~ql~ 74 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGEWGHVQNDNI-----TGK-R----KPKFIKAVLELLAKDTHPVVIADRNNHQKRERKQLF 74 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCCCCccccCCC-----CCC-C----HHHHHHHHHHHHhhCCCCEEEEeCCCchHHHHHHHH
Confidence 688999999999999999984212222221 111 0 0111100 0112124577999998888887777888
Q ss_pred HHHHc
Q 040742 374 EAMEQ 378 (581)
Q Consensus 374 ~~me~ 378 (581)
+.+++
T Consensus 75 ~~~~~ 79 (168)
T PF08303_consen 75 EDVSQ 79 (168)
T ss_pred HHHHH
Confidence 77765
No 421
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.15 E-value=0.14 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=21.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+++++|++|+|||+++++++...
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 89999999999999999999763
No 422
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.10 E-value=0.1 Score=49.03 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=24.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.++|+||+|+|||+|++.+.+..|..+
T Consensus 4 ~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhccccc
Confidence 699999999999999999999988654
No 423
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.07 E-value=0.11 Score=50.78 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=28.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---cEEEecCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---GIYVCGNATT 325 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~~~~~~~~~~ 325 (581)
-+.|+||+|+|||++++.+.++... .+++.|...+
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~ 66 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDIS 66 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecc
Confidence 5889999999999999999998743 5566666543
No 424
>PRK13975 thymidylate kinase; Provisional
Probab=93.02 E-value=0.08 Score=50.24 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=23.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-|.+.|++|+|||++++.+++.+..
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998864
No 425
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=92.98 E-value=0.084 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.++|+|+||+|||+|++.+...
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999988753
No 426
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=92.96 E-value=0.082 Score=48.21 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.++++|+||+|||+|+..+...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
No 427
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=92.96 E-value=0.082 Score=48.38 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=18.8
Q ss_pred eeEEeCCCCChHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~ 311 (581)
.++++|+||+|||+|+..+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987764
No 428
>PLN02165 adenylate isopentenyltransferase
Probab=92.93 E-value=0.1 Score=53.47 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.++|+||+|+|||+|+..+|+.++..+
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eI 71 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEI 71 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCce
Confidence 689999999999999999999987543
No 429
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.93 E-value=0.065 Score=50.95 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.6
Q ss_pred eEEeCCCCChHHHHHHHHHHHCCC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
|-+.|++|+|||++|+.++..+..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 678999999999999999998863
No 430
>PRK08356 hypothetical protein; Provisional
Probab=92.93 E-value=0.081 Score=50.38 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.3
Q ss_pred eeEEeCCCCChHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~ 311 (581)
.++|+||||+|||++++.+.+
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999965
No 431
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.92 E-value=0.077 Score=47.53 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.++|+|+.|+|||+|++++...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 5999999999999999998753
No 432
>PRK12338 hypothetical protein; Provisional
Probab=92.87 E-value=0.13 Score=52.55 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=24.5
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.-+++.|.||+|||++|+.+|+.++...
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 4789999999999999999999987543
No 433
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=92.86 E-value=0.13 Score=48.55 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=23.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.++|+||+|+||+++++.+.+..|..+
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~~~~~ 30 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEIPDAF 30 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCcce
Confidence 799999999999999999998876444
No 434
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=92.84 E-value=0.12 Score=50.06 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=25.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEec
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCG 321 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~ 321 (581)
.+.+.||+|+|||++++.+++.++-.+..+|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g 34 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSG 34 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCc
Confidence 6889999999999999999998775544444
No 435
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.81 E-value=0.034 Score=52.68 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++...+
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999997653
No 436
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.80 E-value=0.088 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-++|+||+|+|||+|++.+.+..+
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~~~ 38 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRERKL 38 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhcCC
Confidence 588899999999999999987643
No 437
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=92.80 E-value=0.093 Score=46.77 Aligned_cols=23 Identities=43% Similarity=0.788 Sum_probs=20.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
++++++|++|+|||+|+..+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999988754
No 438
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.78 E-value=0.082 Score=51.16 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+||+|+|||+|++.++...+
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcC
Confidence 689999999999999999998764
No 439
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.72 E-value=0.14 Score=47.70 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
.+|+.|+||+|||++|..++...+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCC
Confidence 58999999999999999999886543
No 440
>PTZ00202 tuzin; Provisional
Probab=92.68 E-value=0.28 Score=51.97 Aligned_cols=55 Identities=18% Similarity=0.049 Sum_probs=38.5
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
.+...|.+.....+...|-+.... . .--+.|.|++|+|||+|++.+...++...+
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~---------~--privvLtG~~G~GKTTLlR~~~~~l~~~qL 315 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTA---------H--PRIVVFTGFRGCGKSSLCRSAVRKEGMPAV 315 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCC---------C--ceEEEEECCCCCCHHHHHHHHHhcCCceEE
Confidence 346778887777776555432110 0 015889999999999999999988875444
No 441
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=92.67 E-value=0.1 Score=47.20 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.2
Q ss_pred eeEEeCCCCChHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~ 311 (581)
.++++|+||+|||+|+..+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999988875
No 442
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=92.62 E-value=0.097 Score=47.64 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.++++|+||+|||+|+..+...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998753
No 443
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.61 E-value=0.23 Score=43.41 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-|+|.|+=|+|||+++|.+++.++.
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 6999999999999999999999854
No 444
>PRK13808 adenylate kinase; Provisional
Probab=92.59 E-value=0.12 Score=53.17 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
+|+|+||||+|||++++.|++.++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl 26 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGI 26 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999998754
No 445
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.59 E-value=0.089 Score=48.53 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..++++|++|+|||+|++.+...
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcC
Confidence 57999999999999999999864
No 446
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=92.59 E-value=0.096 Score=47.62 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=19.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.++++|+||+|||+|++.+...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988743
No 447
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=92.54 E-value=0.1 Score=47.93 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.++++|++|+|||+|++.+...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998754
No 448
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=92.53 E-value=0.11 Score=47.26 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
..++++|+||+|||+|+..+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999888774
No 449
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.51 E-value=0.092 Score=49.29 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.9
Q ss_pred eEEeCCCCChHHHHHHHHHHHCC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~ 314 (581)
|.+.|+||+|||+|++.+++.+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998863
No 450
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=92.51 E-value=0.1 Score=46.73 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=19.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.++++|+||+|||+|+..+...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988644
No 451
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.51 E-value=0.096 Score=50.40 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 688999999999999999997754
No 452
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.48 E-value=0.093 Score=50.53 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++.+.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998764
No 453
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.48 E-value=0.3 Score=49.41 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.++|+||+|+|||+++..++..+
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999998888654
No 454
>PRK06696 uridine kinase; Validated
Probab=92.48 E-value=0.17 Score=49.20 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.-|.+.|++|+|||++|+.|++.++
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 455
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=92.47 E-value=0.094 Score=48.01 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+|+++|++|+|||+|+..+....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 48999999999999999987643
No 456
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=92.45 E-value=0.11 Score=47.77 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|+||+|||+|+..+...
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 47999999999999999988754
No 457
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.44 E-value=0.1 Score=50.38 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++...+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998764
No 458
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.43 E-value=0.099 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=22.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998764
No 459
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=92.38 E-value=0.11 Score=47.48 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
-|+++|+||+|||+|++++...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3889999999999999998753
No 460
>PRK10646 ADP-binding protein; Provisional
Probab=92.34 E-value=0.21 Score=45.43 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=23.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-++|.|+=|+|||+++|.+++.++.
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999999864
No 461
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.34 E-value=0.1 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=22.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++...+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 799999999999999999998875
No 462
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=92.34 E-value=0.1 Score=47.93 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=19.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
+++++|+||+|||+|++.+...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999988653
No 463
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=92.32 E-value=0.097 Score=47.55 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
+++++|++|+|||+|+..+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 4899999999999999988753
No 464
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.30 E-value=0.11 Score=47.92 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=22.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 799999999999999999998875
No 465
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.29 E-value=0.11 Score=49.80 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++...+
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 699999999999999999998764
No 466
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.23 E-value=0.11 Score=52.16 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=23.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
|++++|+||+|||+|++.++..+..
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCC
Confidence 8999999999999999999998754
No 467
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=92.22 E-value=0.14 Score=46.27 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..+||.|++|+|||+++..+.+.
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 47999999999999999887764
No 468
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.22 E-value=0.13 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=22.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.++|++|+|||+|++.++...+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 688999999999999999998864
No 469
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=92.20 E-value=0.12 Score=47.26 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.0
Q ss_pred eeEEeCCCCChHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~ 311 (581)
+++++|++|+|||+|+.++..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999988764
No 470
>PRK13695 putative NTPase; Provisional
Probab=92.20 E-value=0.12 Score=48.07 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+++|.|+||+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987654
No 471
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=92.20 E-value=0.11 Score=47.89 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=21.2
Q ss_pred eCCCCChHHHHHHHHHHHCCCcEEEec
Q 040742 295 VGDPGLGKSQLLQAAAAVSPRGIYVCG 321 (581)
Q Consensus 295 ~G~pGtGKT~la~~la~~~~~~~~~~~ 321 (581)
+|+||+|||++++.++..++ .+++.+
T Consensus 1 ~G~sGsGKSTla~~la~~l~-~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH-AAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC-CeEEeC
Confidence 59999999999999999885 344444
No 472
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.19 E-value=0.11 Score=50.03 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998764
No 473
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=92.19 E-value=0.099 Score=54.76 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=21.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+|+-|+||.|||++|.++|..+
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHH
Confidence 49999999999999999999886
No 474
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.19 E-value=0.11 Score=49.29 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=22.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 789999999999999999998864
No 475
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.16 E-value=0.11 Score=47.40 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=21.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-|.|.|-||+|||+||+++.+.+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 476
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.14 E-value=0.12 Score=48.32 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=22.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.++|++|+|||+|++.++...+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 799999999999999999998864
No 477
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.12 E-value=0.11 Score=46.79 Aligned_cols=82 Identities=22% Similarity=0.280 Sum_probs=46.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---cEEEecCCCccCCceeEEEecCccccce-eccceeeecCceEEEEcCCCC-C
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---GIYVCGNATTKAGLTVAVVKDSVTNDYA-FEAGAMVLADSGLCCIDEFDK-M 365 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~l~~a~~gil~iDEi~~-~ 365 (581)
.+.++|++|+|||+|++.++...+. .+++.+. ........-..|+.. ..-......+..++++||-.. +
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------VKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------EEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 7899999999999999999988753 2333321 011111110011110 000111123568999999754 5
Q ss_pred CHHHH-HHHHHHHc
Q 040742 366 SAEHQ-ALLEAMEQ 378 (581)
Q Consensus 366 ~~~~~-~L~~~me~ 378 (581)
+.+.. .+.+.+.+
T Consensus 102 D~~~~~~l~~~l~~ 115 (144)
T cd03221 102 DLESIEALEEALKE 115 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555 67777753
No 478
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.12 E-value=0.11 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++...+
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998764
No 479
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.11 E-value=0.12 Score=49.34 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..++++|+||+|||+|++.+...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999988764
No 480
>PRK06761 hypothetical protein; Provisional
Probab=92.10 E-value=0.12 Score=51.91 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+++.|+||+|||++++.+++.+..
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4899999999999999999988753
No 481
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.10 E-value=0.11 Score=50.26 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998764
No 482
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=92.07 E-value=0.57 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
+|+|+|.||+|||+++..+...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC
Confidence 7999999999999999999753
No 483
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.05 E-value=0.12 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=22.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+||+|+|||+|++.++...+
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 699999999999999999998764
No 484
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.04 E-value=0.29 Score=54.88 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 260 ELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 260 e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+.-|.|+.+++..+ -.++.|+||||||++++.+...+
T Consensus 155 d~Qk~Av~~a~~~~-----------------~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 155 DWQKVAAAVALTRR-----------------ISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred HHHHHHHHHHhcCC-----------------eEEEEeCCCCCHHHHHHHHHHHH
Confidence 55677777776654 58999999999999888776543
No 485
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.04 E-value=0.11 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=22.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 689999999999999999998764
No 486
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=92.04 E-value=0.17 Score=57.11 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=18.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+++.||||||||+++..+...
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999977776544
No 487
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=92.02 E-value=0.12 Score=59.81 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=24.4
Q ss_pred eEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
+|++|+||+|||+.+..+++.++..+.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~ 386 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVV 386 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhccccee
Confidence 799999999999999999999877655
No 488
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=91.99 E-value=0.11 Score=50.39 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.4
Q ss_pred eEEeCCCCChHHHHHHHHHHHCC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~ 314 (581)
+-+.|++|+|||++++.|+..+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999998874
No 489
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.98 E-value=0.12 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=22.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++...+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998764
No 490
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=91.97 E-value=0.42 Score=46.58 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=40.4
Q ss_pred HHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 244 IFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 244 ~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.++.+.+...| +.+|+-+++--+.+.. ..+-||+=|.||+|||++|..+|.-++-..
T Consensus 61 ~~~~l~~k~~~-----e~a~rY~lwR~ir~~~------------~p~IILIGGasGVGkStIA~ElA~rLgI~~ 117 (299)
T COG2074 61 VYQKLLEKGDP-----EVAKRYLLWRRIRKMK------------RPLIILIGGASGVGKSTIAGELARRLGIRS 117 (299)
T ss_pred HHHHHHHhcCH-----HHHHHHHHHHHHhccC------------CCeEEEecCCCCCChhHHHHHHHHHcCCce
Confidence 45556665555 5567777776665432 124688889999999999999999887543
No 491
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.96 E-value=0.23 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.++|.||+|+|||+|++.+.+..
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999876
No 492
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=91.96 E-value=0.22 Score=50.17 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.++|.+|+|||+||..+++.
T Consensus 21 ~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 21 VVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp EEEEEESTTSSHHHHHHHHHCH
T ss_pred EEEEEcCCcCCcceeeeecccc
Confidence 7999999999999999999866
No 493
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.95 E-value=0.12 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998864
No 494
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=91.95 E-value=0.14 Score=46.68 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.++++|++|+|||+|+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999988754
No 495
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.94 E-value=0.12 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.6
Q ss_pred eEEeCCCCChHHHHHHHHHHHC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~ 313 (581)
++++|+||+|||+++..++..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999988764
No 496
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.94 E-value=0.13 Score=48.18 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=44.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---cEEEecCCCccCCceeEEEecC-cc-ccce-eccceeeecCceEEEEcCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---GIYVCGNATTKAGLTVAVVKDS-VT-NDYA-FEAGAMVLADSGLCCIDEFDK 364 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~~~~~~~~~~~~~l~~~~~~~~-~~-~~~~-~~~g~l~~a~~gil~iDEi~~ 364 (581)
.+.|+|++|+|||+|++.++.+.+. .+.+.|.. .+...... .+ |+.. +.-......+..++++||-..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------PVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------EEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 6889999999999999999988643 33333311 01110000 11 1110 111112223678999999765
Q ss_pred -CCHHHH-HHHHHHH
Q 040742 365 -MSAEHQ-ALLEAME 377 (581)
Q Consensus 365 -~~~~~~-~L~~~me 377 (581)
++.... .+.+.+.
T Consensus 101 ~LD~~~~~~l~~~l~ 115 (177)
T cd03222 101 YLDIEQRLNAARAIR 115 (177)
T ss_pred cCCHHHHHHHHHHHH
Confidence 445544 5666554
No 497
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.93 E-value=0.13 Score=47.70 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=22.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+||+|+|||+|++.++...+
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 789999999999999999998875
No 498
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=91.92 E-value=0.11 Score=46.54 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.9
Q ss_pred eEEeCCCCChHHHHHHHHHHH
Q 040742 292 VIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~ 312 (581)
++++|++|+|||+|++.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999998754
No 499
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.92 E-value=0.13 Score=47.95 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=22.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.++|++|+|||+|++.++...+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998764
No 500
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=91.91 E-value=0.13 Score=46.97 Aligned_cols=22 Identities=36% Similarity=0.770 Sum_probs=19.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
..++++|+||+|||+|+..+..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~ 25 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTR 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999874
Done!